Query 008058
Match_columns 579
No_of_seqs 605 out of 4110
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 1.6E-50 3.4E-55 395.9 36.7 504 2-567 306-838 (893)
2 KOG0271 Notchless-like WD40 re 100.0 3.6E-47 7.8E-52 345.0 23.4 323 2-378 114-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 2.7E-47 5.8E-52 373.0 23.8 507 1-573 103-768 (775)
4 KOG0272 U4/U6 small nuclear ri 100.0 5.8E-45 1.3E-49 335.0 21.6 281 3-378 175-458 (459)
5 KOG0306 WD40-repeat-containing 100.0 5.1E-43 1.1E-47 343.1 26.5 427 3-563 373-837 (888)
6 KOG0271 Notchless-like WD40 re 100.0 2E-40 4.4E-45 301.2 21.8 274 86-381 127-440 (480)
7 KOG0286 G-protein beta subunit 100.0 1.6E-38 3.4E-43 279.5 29.6 281 3-378 55-343 (343)
8 KOG0315 G-protein beta subunit 100.0 2.5E-35 5.4E-40 253.5 26.4 272 18-380 11-288 (311)
9 KOG4547 WD40 repeat-containing 100.0 1.2E-35 2.7E-40 286.1 27.2 475 14-563 2-509 (541)
10 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-36 6E-41 277.9 17.5 237 3-280 217-458 (459)
11 KOG0279 G protein beta subunit 100.0 2.6E-34 5.7E-39 251.5 28.4 287 3-380 15-313 (315)
12 KOG0318 WD40 repeat stress pro 100.0 1.6E-33 3.5E-38 266.4 35.1 357 4-382 60-562 (603)
13 KOG0295 WD40 repeat-containing 100.0 3.2E-35 6.8E-40 266.1 21.5 279 4-379 109-405 (406)
14 KOG0291 WD40-repeat-containing 100.0 3.1E-33 6.7E-38 274.8 32.8 325 5-381 147-509 (893)
15 KOG0285 Pleiotropic regulator 100.0 2.8E-34 6E-39 259.1 23.2 285 4-379 152-438 (460)
16 KOG0284 Polyadenylation factor 100.0 1.7E-35 3.7E-40 271.4 14.9 281 4-379 97-379 (464)
17 KOG0279 G protein beta subunit 100.0 3.2E-33 7E-38 244.7 26.3 243 3-282 63-313 (315)
18 KOG0263 Transcription initiati 100.0 7.3E-34 1.6E-38 282.0 23.0 238 9-285 382-652 (707)
19 KOG0306 WD40-repeat-containing 100.0 3.5E-33 7.6E-38 274.3 26.3 344 5-399 67-643 (888)
20 KOG0265 U5 snRNP-specific prot 100.0 6.4E-33 1.4E-37 245.2 24.7 283 3-379 47-337 (338)
21 KOG0266 WD40 repeat-containing 100.0 2.4E-32 5.2E-37 279.2 31.5 280 4-379 160-453 (456)
22 KOG0273 Beta-transducin family 100.0 2.8E-32 6.1E-37 254.8 27.7 339 3-379 178-522 (524)
23 KOG0286 G-protein beta subunit 100.0 3.6E-32 7.8E-37 239.5 26.6 232 9-280 101-343 (343)
24 KOG0315 G-protein beta subunit 100.0 6.8E-32 1.5E-36 232.4 24.8 252 3-296 40-302 (311)
25 KOG0645 WD40 repeat protein [G 100.0 1.4E-31 3E-36 233.5 26.8 247 112-379 56-310 (312)
26 KOG0263 Transcription initiati 100.0 1.6E-32 3.4E-37 272.6 23.0 201 2-233 450-652 (707)
27 KOG0293 WD40 repeat-containing 100.0 2.5E-32 5.5E-37 250.8 21.3 284 3-380 224-513 (519)
28 cd00200 WD40 WD40 domain, foun 100.0 9.8E-31 2.1E-35 253.4 33.9 280 2-378 8-289 (289)
29 PLN00181 protein SPA1-RELATED; 100.0 7.2E-31 1.6E-35 288.5 36.7 304 3-379 483-792 (793)
30 KOG0276 Vesicle coat complex C 100.0 2.8E-31 6E-36 255.9 25.7 247 3-290 13-265 (794)
31 KOG0296 Angio-associated migra 100.0 9.5E-31 2.1E-35 237.3 27.5 324 2-379 63-397 (399)
32 KOG0316 Conserved WD40 repeat- 100.0 6.2E-31 1.3E-35 224.7 23.2 249 2-293 16-268 (307)
33 KOG0281 Beta-TrCP (transducin 100.0 9.7E-33 2.1E-37 248.2 12.0 277 3-381 197-478 (499)
34 KOG0275 Conserved WD40 repeat- 100.0 1.1E-31 2.5E-36 239.2 15.2 284 9-378 217-507 (508)
35 KOG0318 WD40 repeat stress pro 100.0 5.5E-29 1.2E-33 235.8 33.6 321 5-379 192-601 (603)
36 KOG0273 Beta-transducin family 100.0 5.1E-30 1.1E-34 239.7 24.8 247 4-293 236-493 (524)
37 KOG0282 mRNA splicing factor [ 100.0 6E-31 1.3E-35 246.9 18.3 283 4-378 215-503 (503)
38 KOG0278 Serine/threonine kinas 100.0 4.2E-31 9.1E-36 227.6 15.6 279 2-380 13-297 (334)
39 KOG0310 Conserved WD40 repeat- 100.0 1.2E-29 2.6E-34 238.6 26.3 434 4-577 27-480 (487)
40 KOG0295 WD40 repeat-containing 100.0 3E-30 6.5E-35 233.9 20.3 237 4-281 151-405 (406)
41 KOG0284 Polyadenylation factor 100.0 1.5E-30 3.2E-35 239.1 13.9 240 2-280 137-378 (464)
42 KOG0292 Vesicle coat complex C 100.0 2.6E-29 5.7E-34 251.0 22.2 258 3-299 9-297 (1202)
43 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-27 2.3E-32 214.4 29.8 250 3-293 14-273 (311)
44 KOG0319 WD40-repeat-containing 100.0 1.7E-28 3.6E-33 241.5 25.1 274 9-378 327-617 (775)
45 KOG0643 Translation initiation 100.0 6.9E-28 1.5E-32 209.9 25.0 276 86-379 22-316 (327)
46 KOG0281 Beta-TrCP (transducin 100.0 5.6E-30 1.2E-34 230.5 12.3 238 2-286 236-481 (499)
47 KOG0283 WD40 repeat-containing 100.0 2.3E-28 4.9E-33 245.3 23.3 259 2-285 266-579 (712)
48 KOG0266 WD40 repeat-containing 100.0 9.2E-28 2E-32 245.5 27.7 238 4-282 204-454 (456)
49 KOG1539 WD repeat protein [Gen 100.0 3.2E-26 6.9E-31 228.3 36.4 312 12-379 165-647 (910)
50 KOG0296 Angio-associated migra 100.0 1.2E-27 2.7E-32 217.1 22.7 274 4-325 107-394 (399)
51 KOG0292 Vesicle coat complex C 100.0 2.9E-28 6.4E-33 243.6 20.3 236 86-382 21-282 (1202)
52 KOG0276 Vesicle coat complex C 100.0 4.7E-27 1E-31 226.9 27.8 236 3-278 55-295 (794)
53 KOG0640 mRNA cleavage stimulat 100.0 1.8E-28 3.8E-33 217.7 16.4 303 3-379 112-425 (430)
54 KOG1407 WD40 repeat protein [F 100.0 4E-27 8.6E-32 204.6 24.3 249 2-290 19-269 (313)
55 KOG0285 Pleiotropic regulator 100.0 4.1E-28 8.9E-33 219.4 18.1 218 86-322 163-382 (460)
56 KOG0316 Conserved WD40 repeat- 100.0 2.8E-27 6.1E-32 202.4 20.8 264 86-379 29-298 (307)
57 PTZ00421 coronin; Provisional 100.0 3.5E-26 7.5E-31 232.8 32.7 255 12-288 27-296 (493)
58 cd00200 WD40 WD40 domain, foun 100.0 4.4E-26 9.5E-31 220.7 30.6 233 9-280 55-289 (289)
59 KOG0277 Peroxisomal targeting 100.0 5.4E-27 1.2E-31 202.9 21.1 284 8-378 11-307 (311)
60 KOG0265 U5 snRNP-specific prot 100.0 2.7E-26 5.8E-31 203.4 24.1 238 2-280 89-336 (338)
61 KOG0305 Anaphase promoting com 100.0 1.8E-26 3.8E-31 226.1 25.2 271 12-380 184-461 (484)
62 KOG0313 Microtubule binding pr 100.0 3.6E-26 7.7E-31 208.7 25.2 271 17-327 115-416 (423)
63 KOG0282 mRNA splicing factor [ 100.0 8.4E-28 1.8E-32 225.9 14.9 241 67-380 216-462 (503)
64 KOG0289 mRNA splicing factor [ 100.0 3.8E-26 8.2E-31 211.8 24.8 275 12-378 226-504 (506)
65 PTZ00420 coronin; Provisional 100.0 3.1E-25 6.7E-30 226.6 33.1 229 23-285 50-296 (568)
66 KOG0274 Cdc4 and related F-box 100.0 3.4E-26 7.4E-31 232.9 26.0 236 9-291 212-450 (537)
67 PLN00181 protein SPA1-RELATED; 99.9 2.7E-25 5.8E-30 244.6 33.5 241 4-281 533-792 (793)
68 KOG0277 Peroxisomal targeting 99.9 2E-26 4.2E-31 199.5 18.0 238 9-281 64-308 (311)
69 KOG0645 WD40 repeat protein [G 99.9 2.9E-25 6.3E-30 194.1 24.5 239 3-282 61-311 (312)
70 KOG0310 Conserved WD40 repeat- 99.9 6E-26 1.3E-30 213.9 21.7 231 9-279 72-306 (487)
71 KOG0288 WD40 repeat protein Ti 99.9 1E-26 2.3E-31 214.3 15.5 277 3-377 175-458 (459)
72 KOG0308 Conserved WD40 repeat- 99.9 9.5E-26 2E-30 219.1 20.4 231 15-284 35-287 (735)
73 KOG1408 WD40 repeat protein [F 99.9 1.2E-25 2.5E-30 220.1 20.9 334 8-379 327-712 (1080)
74 KOG0305 Anaphase promoting com 99.9 3.6E-25 7.7E-30 217.0 23.9 240 4-284 218-463 (484)
75 KOG0973 Histone transcription 99.9 3.9E-25 8.5E-30 227.6 24.6 299 4-380 14-355 (942)
76 KOG0772 Uncharacterized conser 99.9 2.2E-25 4.7E-30 210.9 20.5 284 3-324 167-482 (641)
77 KOG0274 Cdc4 and related F-box 99.9 7.2E-25 1.6E-29 223.3 25.2 239 2-290 248-490 (537)
78 KOG0293 WD40 repeat-containing 99.9 1.9E-25 4E-30 205.8 18.5 240 3-282 269-513 (519)
79 KOG0294 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 194.2 22.6 242 2-285 42-284 (362)
80 KOG0278 Serine/threonine kinas 99.9 3.6E-26 7.8E-31 197.3 12.4 242 3-286 59-301 (334)
81 PTZ00421 coronin; Provisional 99.9 8.1E-24 1.8E-28 215.5 31.5 204 2-234 74-294 (493)
82 KOG0275 Conserved WD40 repeat- 99.9 4.8E-26 1E-30 203.4 13.1 238 1-280 261-507 (508)
83 KOG2096 WD40 repeat protein [G 99.9 3E-24 6.6E-29 191.7 24.0 286 3-377 86-399 (420)
84 KOG0641 WD40 repeat protein [G 99.9 1.6E-23 3.6E-28 178.2 26.4 243 114-379 86-348 (350)
85 PTZ00420 coronin; Provisional 99.9 2.3E-23 5.1E-28 212.9 32.4 179 92-283 50-249 (568)
86 KOG0268 Sof1-like rRNA process 99.9 1.9E-25 4.2E-30 202.6 14.6 261 87-379 80-344 (433)
87 KOG0283 WD40 repeat-containing 99.9 5.5E-25 1.2E-29 221.0 18.7 241 111-379 261-575 (712)
88 KOG0973 Histone transcription 99.9 3.8E-24 8.3E-29 220.4 25.2 244 2-284 68-357 (942)
89 KOG0641 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 176.7 25.4 245 3-281 89-348 (350)
90 KOG0643 Translation initiation 99.9 3.5E-24 7.5E-29 186.9 20.3 275 3-325 10-313 (327)
91 KOG0313 Microtubule binding pr 99.9 7.4E-24 1.6E-28 193.6 22.2 239 2-281 143-417 (423)
92 KOG0300 WD40 repeat-containing 99.9 7.8E-24 1.7E-28 188.8 20.6 277 12-380 155-476 (481)
93 KOG0288 WD40 repeat protein Ti 99.9 3.1E-24 6.7E-29 198.1 17.4 234 3-279 219-458 (459)
94 KOG0299 U3 snoRNP-associated p 99.9 8E-24 1.7E-28 198.1 19.8 298 4-379 143-455 (479)
95 KOG0646 WD40 repeat protein [G 99.9 3.4E-23 7.3E-28 194.4 23.6 281 22-382 12-309 (476)
96 KOG2106 Uncharacterized conser 99.9 1.9E-21 4.1E-26 184.0 34.3 345 9-379 250-625 (626)
97 KOG1407 WD40 repeat protein [F 99.9 1.9E-22 4E-27 175.7 24.6 234 4-281 65-310 (313)
98 KOG0301 Phospholipase A2-activ 99.9 3.1E-23 6.7E-28 203.2 21.3 269 3-327 14-286 (745)
99 KOG0294 WD40 repeat-containing 99.9 1.8E-22 3.8E-27 180.4 24.2 223 86-380 53-281 (362)
100 KOG0269 WD40 repeat-containing 99.9 1.3E-23 2.7E-28 208.3 18.6 236 12-282 46-296 (839)
101 KOG0772 Uncharacterized conser 99.9 5E-23 1.1E-27 195.0 21.1 291 65-378 167-485 (641)
102 KOG0264 Nucleosome remodeling 99.9 8.2E-23 1.8E-27 191.5 22.3 255 3-282 124-404 (422)
103 KOG0289 mRNA splicing factor [ 99.9 1.1E-22 2.4E-27 188.9 22.7 237 9-281 265-505 (506)
104 KOG1273 WD40 repeat protein [G 99.9 1.6E-22 3.6E-27 180.4 22.1 248 8-290 26-288 (405)
105 KOG0647 mRNA export protein (c 99.9 1.7E-22 3.7E-27 179.5 21.4 257 5-299 29-298 (347)
106 KOG1332 Vesicle coat complex C 99.9 6.6E-23 1.4E-27 176.7 18.1 242 5-281 13-285 (299)
107 KOG1274 WD40 repeat protein [G 99.9 2.4E-22 5.3E-27 203.1 24.7 235 10-283 18-263 (933)
108 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-21 4.1E-26 174.6 27.1 268 86-378 26-301 (311)
109 KOG0650 WD40 repeat nucleolar 99.9 1.1E-22 2.5E-27 195.9 19.7 290 2-377 399-732 (733)
110 KOG1539 WD repeat protein [Gen 99.9 1.7E-21 3.6E-26 194.9 28.5 328 15-380 122-606 (910)
111 KOG4283 Transcription-coupled 99.9 2.4E-21 5.1E-26 171.5 25.9 213 3-234 43-280 (397)
112 KOG0299 U3 snoRNP-associated p 99.9 3.5E-22 7.6E-27 187.2 21.2 236 4-279 203-453 (479)
113 KOG0639 Transducin-like enhanc 99.9 8.1E-23 1.7E-27 192.9 17.0 272 9-322 423-697 (705)
114 KOG2106 Uncharacterized conser 99.9 1.7E-21 3.6E-26 184.3 25.7 312 9-377 158-518 (626)
115 KOG0640 mRNA cleavage stimulat 99.9 1.1E-22 2.4E-27 181.0 16.4 241 4-280 173-424 (430)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.4E-21 2E-25 185.5 32.0 268 17-380 1-279 (300)
117 KOG0639 Transducin-like enhanc 99.9 1.3E-22 2.8E-27 191.4 16.5 230 10-281 470-703 (705)
118 KOG0301 Phospholipase A2-activ 99.9 7E-22 1.5E-26 193.8 21.7 222 12-282 65-288 (745)
119 KOG1036 Mitotic spindle checkp 99.9 2.4E-21 5.3E-26 172.9 22.9 259 9-308 17-287 (323)
120 KOG0269 WD40 repeat-containing 99.9 8.4E-23 1.8E-27 202.6 14.6 237 12-284 94-342 (839)
121 KOG0264 Nucleosome remodeling 99.9 1.2E-21 2.7E-26 183.6 20.5 246 86-380 137-404 (422)
122 KOG0268 Sof1-like rRNA process 99.9 8.6E-23 1.9E-27 185.5 11.8 269 10-327 71-343 (433)
123 KOG0267 Microtubule severing p 99.9 2.3E-23 5.1E-28 204.9 8.7 231 3-274 28-260 (825)
124 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 189.5 20.4 291 6-384 50-395 (720)
125 KOG1063 RNA polymerase II elon 99.9 7.6E-21 1.6E-25 186.5 25.0 341 9-379 271-762 (764)
126 KOG2055 WD40 repeat protein [G 99.9 5.7E-21 1.2E-25 179.0 22.9 287 3-379 213-511 (514)
127 KOG0302 Ribosome Assembly prot 99.9 4.4E-21 9.5E-26 175.4 21.2 205 16-233 164-381 (440)
128 KOG0267 Microtubule severing p 99.9 5.8E-23 1.3E-27 202.1 8.3 210 86-308 40-251 (825)
129 KOG1408 WD40 repeat protein [F 99.9 1.2E-21 2.6E-26 192.3 17.3 242 6-284 462-715 (1080)
130 KOG0647 mRNA export protein (c 99.9 1.2E-20 2.6E-25 167.8 21.9 271 67-371 29-315 (347)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-19 3.4E-24 176.9 31.2 240 10-291 35-288 (300)
132 KOG0308 Conserved WD40 repeat- 99.9 2.2E-21 4.8E-26 189.0 17.5 233 12-282 80-327 (735)
133 KOG2445 Nuclear pore complex c 99.9 3.3E-20 7.1E-25 165.5 23.2 241 10-282 18-318 (361)
134 KOG2919 Guanine nucleotide-bin 99.9 1.3E-20 2.8E-25 169.0 20.6 262 11-292 55-338 (406)
135 KOG0646 WD40 repeat protein [G 99.9 6.2E-21 1.3E-25 179.3 19.3 198 86-291 93-316 (476)
136 KOG1063 RNA polymerase II elon 99.9 2.1E-20 4.6E-25 183.5 23.2 334 8-381 148-649 (764)
137 KOG2048 WD40 repeat protein [G 99.9 2.4E-19 5.3E-24 175.8 29.4 242 2-284 24-277 (691)
138 KOG1332 Vesicle coat complex C 99.9 1.6E-20 3.4E-25 162.2 17.5 235 86-378 23-284 (299)
139 KOG0270 WD40 repeat-containing 99.9 2.9E-20 6.2E-25 173.7 20.5 253 17-288 192-455 (463)
140 KOG2048 WD40 repeat protein [G 99.9 2E-19 4.4E-24 176.4 26.8 240 4-283 70-320 (691)
141 KOG1273 WD40 repeat protein [G 99.9 6.7E-21 1.4E-25 170.2 15.0 257 120-390 26-292 (405)
142 KOG0300 WD40 repeat-containing 99.8 1.4E-20 3.1E-25 168.1 14.3 188 86-285 160-389 (481)
143 KOG4328 WD40 protein [Function 99.8 7.2E-20 1.6E-24 171.6 18.0 205 65-282 186-399 (498)
144 KOG2055 WD40 repeat protein [G 99.8 5.3E-19 1.1E-23 166.0 19.4 245 3-282 257-512 (514)
145 KOG1274 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 175.9 23.9 263 68-364 16-285 (933)
146 KOG4328 WD40 protein [Function 99.8 7E-19 1.5E-23 165.0 19.8 281 3-319 186-484 (498)
147 KOG1036 Mitotic spindle checkp 99.8 2.3E-18 5E-23 154.1 21.7 225 2-272 53-294 (323)
148 KOG1034 Transcriptional repres 99.8 1.4E-18 3E-23 156.5 18.7 296 4-379 39-382 (385)
149 KOG2445 Nuclear pore complex c 99.8 9.7E-18 2.1E-22 149.8 21.6 253 86-379 25-317 (361)
150 KOG1445 Tumor-specific antigen 99.8 1.6E-18 3.4E-23 168.5 17.3 122 3-148 79-201 (1012)
151 KOG4378 Nuclear protein COP1 [ 99.8 7.4E-18 1.6E-22 159.4 21.4 286 28-361 13-305 (673)
152 KOG0270 WD40 repeat-containing 99.8 8.4E-18 1.8E-22 157.4 21.4 205 69-284 177-406 (463)
153 KOG1188 WD40 repeat protein [G 99.8 3.6E-18 7.9E-23 154.7 17.8 279 86-379 40-345 (376)
154 KOG1034 Transcriptional repres 99.8 3.6E-18 7.8E-23 153.9 17.4 238 9-281 93-382 (385)
155 KOG1007 WD repeat protein TSSC 99.8 1.9E-17 4.1E-22 146.6 21.4 259 86-379 76-360 (370)
156 KOG0307 Vesicle coat complex C 99.8 4.3E-19 9.3E-24 184.3 13.0 286 10-326 11-324 (1049)
157 KOG4283 Transcription-coupled 99.8 4.4E-18 9.6E-23 150.9 17.4 277 86-379 56-364 (397)
158 KOG2096 WD40 repeat protein [G 99.8 7.3E-18 1.6E-22 151.2 18.2 189 9-228 191-400 (420)
159 KOG0307 Vesicle coat complex C 99.8 4.3E-19 9.3E-24 184.3 11.9 241 10-286 69-331 (1049)
160 KOG4378 Nuclear protein COP1 [ 99.8 4.7E-18 1E-22 160.8 16.1 214 10-256 84-302 (673)
161 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 154.4 17.8 208 2-233 80-297 (472)
162 KOG4227 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 150.1 21.3 311 3-379 56-386 (609)
163 KOG0302 Ribosome Assembly prot 99.8 1.1E-17 2.4E-22 153.3 16.6 205 115-379 149-377 (440)
164 KOG0321 WD40 repeat-containing 99.8 3.5E-17 7.7E-22 159.6 20.0 245 3-284 100-393 (720)
165 KOG1009 Chromatin assembly com 99.8 4E-17 8.7E-22 151.2 19.4 253 113-376 61-368 (434)
166 KOG0303 Actin-binding protein 99.8 1.3E-16 2.9E-21 147.1 20.3 207 60-285 77-297 (472)
167 KOG1538 Uncharacterized conser 99.7 7.6E-17 1.6E-21 157.7 18.8 272 3-380 12-293 (1081)
168 COG2319 FOG: WD40 repeat [Gene 99.7 1E-14 2.2E-19 149.7 36.1 323 3-380 65-400 (466)
169 KOG0642 Cell-cycle nuclear pro 99.7 2.9E-17 6.2E-22 158.3 14.7 242 5-287 296-566 (577)
170 KOG2110 Uncharacterized conser 99.7 2.4E-15 5.2E-20 138.1 26.4 233 9-285 9-251 (391)
171 KOG0649 WD40 repeat protein [G 99.7 7.5E-16 1.6E-20 133.3 21.7 227 9-282 14-274 (325)
172 COG2319 FOG: WD40 repeat [Gene 99.7 1.5E-14 3.1E-19 148.5 35.2 320 5-380 111-442 (466)
173 PRK11028 6-phosphogluconolacto 99.7 5.6E-15 1.2E-19 146.4 29.2 188 86-283 46-259 (330)
174 KOG1188 WD40 repeat protein [G 99.7 1.9E-16 4.2E-21 143.7 16.5 190 18-233 41-245 (376)
175 KOG0290 Conserved WD40 repeat- 99.7 6.1E-16 1.3E-20 137.3 18.3 207 5-233 98-321 (364)
176 KOG1587 Cytoplasmic dynein int 99.7 1.1E-15 2.4E-20 155.0 22.4 250 3-283 242-517 (555)
177 KOG0650 WD40 repeat nucleolar 99.7 3.8E-16 8.3E-21 151.3 17.9 225 86-379 412-679 (733)
178 KOG1240 Protein kinase contain 99.7 4.6E-15 1E-19 155.0 24.5 254 3-287 1048-1339(1431)
179 KOG1524 WD40 repeat-containing 99.7 1.4E-15 3.1E-20 145.5 17.5 176 85-277 74-250 (737)
180 KOG1007 WD repeat protein TSSC 99.7 2.9E-15 6.2E-20 132.9 18.2 200 9-230 127-361 (370)
181 KOG0771 Prolactin regulatory e 99.7 6.7E-16 1.4E-20 144.3 14.8 194 10-232 149-356 (398)
182 PRK11028 6-phosphogluconolacto 99.7 3.8E-14 8.2E-19 140.5 28.4 236 10-282 39-304 (330)
183 KOG2110 Uncharacterized conser 99.7 1.1E-13 2.5E-18 127.2 28.6 145 86-232 97-250 (391)
184 KOG0649 WD40 repeat protein [G 99.7 2.5E-14 5.3E-19 124.0 22.1 242 2-279 61-313 (325)
185 KOG2919 Guanine nucleotide-bin 99.7 2.5E-15 5.4E-20 135.4 16.6 225 15-272 121-360 (406)
186 KOG1963 WD40 repeat protein [G 99.7 3.8E-14 8.2E-19 144.1 26.8 292 9-381 209-539 (792)
187 KOG0322 G-protein beta subunit 99.7 2.9E-15 6.2E-20 131.3 16.1 229 86-379 25-322 (323)
188 KOG0642 Cell-cycle nuclear pro 99.7 3.2E-16 6.9E-21 151.2 11.0 248 114-382 291-563 (577)
189 KOG0644 Uncharacterized conser 99.7 5.6E-16 1.2E-20 155.5 12.7 240 4-287 191-473 (1113)
190 KOG1445 Tumor-specific antigen 99.7 1.8E-15 3.9E-20 147.5 15.0 239 13-282 587-844 (1012)
191 KOG1963 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 139.8 28.7 270 11-290 22-383 (792)
192 KOG1517 Guanine nucleotide bin 99.6 9.3E-14 2E-18 143.3 25.2 287 12-380 1071-1381(1387)
193 KOG2111 Uncharacterized conser 99.6 4.4E-13 9.6E-18 121.0 25.3 232 9-284 9-258 (346)
194 KOG1272 WD40-repeat-containing 99.6 2.3E-15 4.9E-20 141.9 10.7 225 10-280 134-360 (545)
195 KOG0771 Prolactin regulatory e 99.6 1E-14 2.2E-19 136.4 14.3 199 121-379 148-353 (398)
196 KOG0322 G-protein beta subunit 99.6 7.5E-15 1.6E-19 128.8 12.5 153 118-281 151-322 (323)
197 KOG1524 WD40 repeat-containing 99.6 1.1E-14 2.4E-19 139.5 13.9 178 3-226 104-282 (737)
198 KOG1009 Chromatin assembly com 99.6 1.5E-13 3.3E-18 127.7 20.9 243 3-286 65-376 (434)
199 KOG4497 Uncharacterized conser 99.6 1.2E-14 2.6E-19 131.2 12.9 227 10-287 13-245 (447)
200 KOG2394 WD40 protein DMR-N9 [G 99.6 2.4E-14 5.2E-19 137.5 14.8 137 65-209 219-384 (636)
201 KOG1334 WD40 repeat protein [G 99.6 4.1E-14 8.8E-19 134.4 16.1 285 3-324 142-461 (559)
202 PRK01742 tolB translocation pr 99.6 2.5E-13 5.4E-18 138.9 23.0 216 26-290 183-411 (429)
203 PRK01742 tolB translocation pr 99.6 1.5E-13 3.2E-18 140.6 20.7 189 4-230 204-401 (429)
204 KOG1517 Guanine nucleotide bin 99.6 2.6E-13 5.7E-18 140.0 21.9 242 16-284 1122-1383(1387)
205 KOG2139 WD40 repeat protein [G 99.6 6E-13 1.3E-17 122.0 21.9 195 4-230 99-309 (445)
206 KOG1587 Cytoplasmic dynein int 99.6 4.7E-13 1E-17 136.0 23.6 244 65-380 242-516 (555)
207 KOG3881 Uncharacterized conser 99.6 3.2E-13 7E-18 125.1 19.9 149 86-235 161-325 (412)
208 KOG2394 WD40 protein DMR-N9 [G 99.6 2.5E-13 5.4E-18 130.6 19.7 194 86-286 185-456 (636)
209 KOG0290 Conserved WD40 repeat- 99.6 6E-13 1.3E-17 118.5 20.2 205 66-284 97-320 (364)
210 KOG0644 Uncharacterized conser 99.6 2.7E-15 5.8E-20 150.7 5.9 238 114-380 187-426 (1113)
211 KOG1538 Uncharacterized conser 99.6 1.1E-13 2.5E-18 135.8 16.7 229 4-281 54-292 (1081)
212 PF08662 eIF2A: Eukaryotic tra 99.6 6E-13 1.3E-17 119.5 19.8 132 96-232 37-181 (194)
213 PF02239 Cytochrom_D1: Cytochr 99.5 1.8E-12 3.8E-17 128.3 24.8 317 18-379 6-346 (369)
214 KOG1523 Actin-related protein 99.5 6.3E-13 1.4E-17 120.1 16.9 206 65-285 10-239 (361)
215 KOG2321 WD40 repeat protein [G 99.5 2.2E-12 4.9E-17 125.0 21.2 185 86-284 145-345 (703)
216 KOG2111 Uncharacterized conser 99.5 4.8E-11 1E-15 108.0 27.3 143 90-233 107-259 (346)
217 PF04003 Utp12: Dip2/Utp12 Fam 99.5 1.7E-14 3.7E-19 117.1 4.2 80 484-563 8-89 (110)
218 PRK03629 tolB translocation pr 99.5 1.3E-11 2.9E-16 125.9 25.9 235 97-359 180-427 (429)
219 KOG1523 Actin-related protein 99.5 2.3E-12 4.9E-17 116.5 17.4 200 3-233 10-239 (361)
220 PF02239 Cytochrom_D1: Cytochr 99.5 1.5E-10 3.2E-15 114.7 31.6 193 86-289 5-209 (369)
221 PRK05137 tolB translocation pr 99.5 2.7E-11 5.9E-16 124.4 27.0 215 27-285 182-415 (435)
222 PRK05137 tolB translocation pr 99.5 2.1E-11 4.6E-16 125.2 26.0 171 97-282 183-366 (435)
223 PRK03629 tolB translocation pr 99.5 1.7E-11 3.6E-16 125.2 25.0 191 9-233 202-409 (429)
224 PF08662 eIF2A: Eukaryotic tra 99.5 9.6E-12 2.1E-16 111.8 20.1 153 121-289 9-185 (194)
225 PF10282 Lactonase: Lactonase, 99.5 5.6E-10 1.2E-14 110.8 34.5 241 11-286 42-328 (345)
226 PRK04922 tolB translocation pr 99.5 1.6E-11 3.4E-16 125.9 24.0 176 97-287 185-373 (433)
227 KOG4227 WD40 repeat protein [G 99.5 4.1E-12 8.8E-17 117.6 17.4 164 114-284 53-227 (609)
228 PRK04922 tolB translocation pr 99.5 3.1E-11 6.7E-16 123.8 26.0 213 27-283 184-412 (433)
229 KOG1354 Serine/threonine prote 99.5 7.9E-12 1.7E-16 114.0 18.8 251 9-285 29-362 (433)
230 PRK02889 tolB translocation pr 99.5 2.2E-11 4.7E-16 124.5 24.5 202 97-320 177-391 (427)
231 KOG1310 WD40 repeat protein [G 99.4 1.5E-12 3.3E-17 125.4 13.4 205 68-287 53-308 (758)
232 KOG3881 Uncharacterized conser 99.4 1.9E-11 4.1E-16 113.6 19.9 191 86-288 115-326 (412)
233 KOG2139 WD40 repeat protein [G 99.4 2.1E-11 4.6E-16 112.0 19.7 191 66-280 99-307 (445)
234 PRK02889 tolB translocation pr 99.4 5.7E-11 1.2E-15 121.4 24.7 180 86-281 207-402 (427)
235 KOG1334 WD40 repeat protein [G 99.4 1.4E-12 3E-17 124.1 10.7 275 86-379 154-465 (559)
236 KOG1310 WD40 repeat protein [G 99.4 3.8E-12 8.3E-17 122.7 13.4 207 2-235 49-308 (758)
237 KOG1240 Protein kinase contain 99.3 1.2E-10 2.7E-15 122.6 22.2 192 86-285 1061-1276(1431)
238 PF10282 Lactonase: Lactonase, 99.3 2.4E-09 5.3E-14 106.2 30.6 277 89-380 2-322 (345)
239 KOG1272 WD40-repeat-containing 99.3 3E-12 6.6E-17 121.1 9.3 230 5-277 172-404 (545)
240 KOG4497 Uncharacterized conser 99.3 2.1E-10 4.5E-15 104.3 20.1 234 3-275 91-425 (447)
241 COG2706 3-carboxymuconate cycl 99.3 4.5E-09 9.7E-14 97.7 28.2 245 11-286 45-327 (346)
242 TIGR02800 propeller_TolB tol-p 99.3 1.6E-09 3.6E-14 111.2 28.0 179 86-281 201-396 (417)
243 PRK01029 tolB translocation pr 99.3 1.7E-09 3.7E-14 110.1 27.3 184 90-286 203-407 (428)
244 TIGR02800 propeller_TolB tol-p 99.3 9.4E-10 2E-14 113.0 24.7 174 97-285 171-357 (417)
245 COG2706 3-carboxymuconate cycl 99.3 9.7E-09 2.1E-13 95.5 27.6 276 89-381 5-322 (346)
246 PRK00178 tolB translocation pr 99.3 1.8E-09 3.9E-14 111.1 25.1 175 97-286 180-367 (430)
247 KOG2315 Predicted translation 99.3 1.2E-09 2.7E-14 106.4 21.4 128 140-283 252-391 (566)
248 PRK00178 tolB translocation pr 99.2 4.5E-09 9.7E-14 108.2 27.3 181 86-282 210-406 (430)
249 KOG0280 Uncharacterized conser 99.2 2.3E-10 5.1E-15 102.5 14.8 198 8-232 124-335 (339)
250 KOG0974 WD-repeat protein WDR6 99.2 2.4E-10 5.3E-15 118.8 16.9 191 14-232 96-290 (967)
251 PRK04792 tolB translocation pr 99.2 2.6E-09 5.6E-14 109.7 24.3 175 97-286 199-386 (448)
252 PRK04792 tolB translocation pr 99.2 5.1E-09 1.1E-13 107.5 26.4 181 86-282 229-425 (448)
253 KOG0309 Conserved WD40 repeat- 99.2 4.6E-11 1E-15 119.3 10.2 203 4-234 25-236 (1081)
254 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.9E-14 99.8 18.7 232 15-285 34-273 (404)
255 KOG2321 WD40 repeat protein [G 99.2 3.5E-10 7.6E-15 110.1 15.5 190 12-232 140-345 (703)
256 PRK01029 tolB translocation pr 99.2 4.3E-09 9.3E-14 107.1 24.1 196 9-233 188-406 (428)
257 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.7E-13 101.3 28.8 224 16-290 64-305 (377)
258 COG5354 Uncharacterized protei 99.2 1.7E-08 3.6E-13 97.5 25.7 330 5-380 34-395 (561)
259 TIGR02658 TTQ_MADH_Hv methylam 99.2 7.4E-08 1.6E-12 93.4 29.5 266 96-380 27-330 (352)
260 KOG0974 WD-repeat protein WDR6 99.2 8E-10 1.7E-14 115.1 16.9 185 86-283 99-289 (967)
261 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.9E-07 4.1E-12 90.6 31.4 224 27-290 27-338 (352)
262 COG5354 Uncharacterized protei 99.1 2E-08 4.2E-13 97.0 23.6 308 4-372 72-421 (561)
263 KOG4547 WD40 repeat-containing 99.1 7.5E-09 1.6E-13 101.7 21.2 190 86-283 5-221 (541)
264 PLN02919 haloacid dehalogenase 99.1 6.9E-08 1.5E-12 108.3 31.2 250 11-286 573-892 (1057)
265 KOG0280 Uncharacterized conser 99.1 2.6E-08 5.6E-13 89.7 20.9 263 94-379 44-332 (339)
266 KOG2315 Predicted translation 99.1 1.3E-08 2.8E-13 99.4 20.5 197 4-232 166-392 (566)
267 TIGR03300 assembly_YfgL outer 99.1 2.7E-08 5.8E-13 100.6 24.0 226 16-291 104-347 (377)
268 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 121.5 11.7 181 11-235 2214-2403(2439)
269 KOG2314 Translation initiation 99.1 3.8E-08 8.2E-13 95.9 22.5 319 10-380 215-573 (698)
270 PF13360 PQQ_2: PQQ-like domai 99.0 4.9E-07 1.1E-11 85.0 27.8 217 26-288 2-236 (238)
271 KOG1064 RAVE (regulator of V-A 99.0 2.3E-09 5E-14 117.2 12.8 181 86-291 2220-2407(2439)
272 COG5170 CDC55 Serine/threonine 99.0 6.6E-09 1.4E-13 93.9 13.4 247 9-280 30-365 (460)
273 PF04762 IKI3: IKI3 family; I 99.0 4.2E-07 9.1E-12 100.2 30.3 238 4-281 76-378 (928)
274 KOG2314 Translation initiation 99.0 1.4E-07 2.9E-12 92.1 22.4 272 11-321 255-559 (698)
275 KOG4532 WD40-like repeat conta 99.0 2.1E-07 4.6E-12 82.8 20.3 200 86-289 84-289 (344)
276 KOG1409 Uncharacterized conser 98.9 3.6E-08 7.7E-13 90.6 15.7 182 3-187 68-270 (404)
277 KOG4190 Uncharacterized conser 98.9 3.6E-09 7.8E-14 102.6 9.4 223 15-280 745-986 (1034)
278 KOG4190 Uncharacterized conser 98.9 3.8E-09 8.3E-14 102.4 8.4 172 113-292 731-916 (1034)
279 KOG2041 WD40 repeat protein [G 98.9 1.6E-07 3.4E-12 94.2 19.8 239 9-273 18-279 (1189)
280 PF08450 SGL: SMP-30/Gluconola 98.9 6.3E-06 1.4E-10 77.8 29.7 217 11-271 5-244 (246)
281 COG4946 Uncharacterized protei 98.9 3.2E-07 6.9E-12 88.0 20.3 173 13-218 327-507 (668)
282 COG4946 Uncharacterized protei 98.9 2.2E-06 4.7E-11 82.4 25.8 170 86-272 332-508 (668)
283 PRK04043 tolB translocation pr 98.9 5.6E-07 1.2E-11 91.1 23.4 189 9-232 191-402 (419)
284 PF08450 SGL: SMP-30/Gluconola 98.9 2.5E-06 5.4E-11 80.6 26.6 191 86-290 12-220 (246)
285 PLN02919 haloacid dehalogenase 98.9 1.2E-06 2.5E-11 98.7 27.1 212 10-234 628-892 (1057)
286 KOG3914 WD repeat protein WDR4 98.8 3.4E-08 7.4E-13 92.8 12.4 159 11-196 68-232 (390)
287 PRK04043 tolB translocation pr 98.8 3.3E-06 7.2E-11 85.5 27.8 181 86-284 199-402 (419)
288 PRK11138 outer membrane biogen 98.8 6.6E-07 1.4E-11 90.9 22.4 228 17-290 120-361 (394)
289 PRK11138 outer membrane biogen 98.8 1.6E-06 3.5E-11 88.0 24.9 237 16-290 68-320 (394)
290 PF15492 Nbas_N: Neuroblastoma 98.8 1.8E-06 3.9E-11 78.3 22.0 207 12-235 50-264 (282)
291 KOG1354 Serine/threonine prote 98.8 1.4E-07 3.1E-12 86.7 15.1 247 86-380 37-359 (433)
292 KOG4714 Nucleoporin [Nuclear s 98.8 6E-08 1.3E-12 85.8 12.1 188 86-280 101-316 (319)
293 KOG1912 WD40 repeat protein [G 98.8 6E-07 1.3E-11 91.1 20.0 242 11-283 21-305 (1062)
294 PF07433 DUF1513: Protein of u 98.8 1.5E-05 3.3E-10 74.6 27.4 200 8-235 7-252 (305)
295 PF13360 PQQ_2: PQQ-like domai 98.8 4.9E-06 1.1E-10 78.2 24.5 188 13-234 32-234 (238)
296 KOG3914 WD repeat protein WDR4 98.8 1.5E-07 3.3E-12 88.5 13.2 160 119-291 64-232 (390)
297 KOG4532 WD40-like repeat conta 98.7 3.4E-06 7.5E-11 75.3 20.2 188 18-235 85-287 (344)
298 KOG1832 HIV-1 Vpr-binding prot 98.7 1.4E-08 3.1E-13 103.8 5.0 192 66-293 1102-1302(1516)
299 PF04762 IKI3: IKI3 family; I 98.7 7.6E-06 1.7E-10 90.5 26.3 187 86-284 87-335 (928)
300 KOG2114 Vacuolar assembly/sort 98.7 7.8E-06 1.7E-10 84.4 23.6 193 12-233 30-246 (933)
301 PF07433 DUF1513: Protein of u 98.7 1.1E-05 2.4E-10 75.6 22.7 194 86-291 17-256 (305)
302 KOG2695 WD40 repeat protein [G 98.6 1.5E-07 3.2E-12 86.7 8.4 141 90-235 228-381 (425)
303 KOG1275 PAB-dependent poly(A) 98.6 1.3E-06 2.7E-11 90.5 15.1 183 85-280 146-340 (1118)
304 KOG2041 WD40 repeat protein [G 98.6 1.5E-06 3.2E-11 87.5 14.7 276 66-364 15-323 (1189)
305 PF15492 Nbas_N: Neuroblastoma 98.6 0.00011 2.3E-09 67.0 25.0 195 89-289 11-266 (282)
306 PF00400 WD40: WD domain, G-be 98.5 4E-07 8.7E-12 58.1 6.8 39 189-228 1-39 (39)
307 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00026 5.7E-09 63.4 26.2 141 17-187 23-165 (354)
308 KOG4714 Nucleoporin [Nuclear s 98.5 1.4E-06 3.1E-11 77.3 11.8 190 86-283 47-255 (319)
309 KOG1912 WD40 repeat protein [G 98.5 7.2E-06 1.6E-10 83.5 17.8 188 19-231 81-305 (1062)
310 KOG2695 WD40 repeat protein [G 98.5 6E-07 1.3E-11 82.8 8.5 151 133-292 228-386 (425)
311 KOG0309 Conserved WD40 repeat- 98.5 6.8E-07 1.5E-11 90.2 9.5 199 3-231 114-340 (1081)
312 PF04053 Coatomer_WDAD: Coatom 98.5 4.2E-05 9E-10 77.3 22.1 217 9-284 36-264 (443)
313 PF00400 WD40: WD domain, G-be 98.4 8.2E-07 1.8E-11 56.6 6.1 38 107-145 2-39 (39)
314 KOG1645 RING-finger-containing 98.4 1.6E-05 3.5E-10 75.1 16.7 240 2-282 192-461 (463)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 2E-07 4.3E-12 95.7 4.3 185 9-235 1105-1296(1516)
316 cd00216 PQQ_DH Dehydrogenases 98.4 9.3E-05 2E-09 77.1 23.9 233 18-291 111-433 (488)
317 KOG2066 Vacuolar assembly/sort 98.4 1.9E-05 4.2E-10 81.1 17.8 175 86-282 49-233 (846)
318 KOG1275 PAB-dependent poly(A) 98.3 1.2E-05 2.6E-10 83.5 14.2 179 16-228 146-340 (1118)
319 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00084 1.8E-08 67.0 26.8 304 14-369 1-347 (353)
320 COG5170 CDC55 Serine/threonine 98.3 6.1E-06 1.3E-10 75.2 10.2 216 116-380 25-309 (460)
321 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00056 1.2E-08 61.3 21.8 187 86-289 23-213 (354)
322 KOG2066 Vacuolar assembly/sort 98.3 8.8E-05 1.9E-09 76.4 19.2 174 16-232 48-235 (846)
323 KOG0882 Cyclophilin-related pe 98.2 5.6E-06 1.2E-10 79.2 9.5 200 86-292 20-241 (558)
324 PRK02888 nitrous-oxide reducta 98.2 0.0002 4.3E-09 73.6 19.5 101 126-231 285-405 (635)
325 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0025 5.4E-08 66.8 27.1 151 18-192 121-338 (527)
326 cd00216 PQQ_DH Dehydrogenases 98.1 0.0021 4.6E-08 67.0 26.6 195 17-235 61-324 (488)
327 PRK02888 nitrous-oxide reducta 98.1 0.0013 2.9E-08 67.8 23.6 246 16-283 140-405 (635)
328 KOG1920 IkappaB kinase complex 98.1 0.00063 1.4E-08 73.6 21.9 193 9-233 72-325 (1265)
329 KOG0882 Cyclophilin-related pe 98.1 5.3E-05 1.1E-09 72.7 12.5 199 9-233 57-308 (558)
330 PF08553 VID27: VID27 cytoplas 98.1 0.00029 6.3E-09 75.2 19.2 139 25-186 502-646 (794)
331 KOG3617 WD40 and TPR repeat-co 98.1 0.00022 4.8E-09 73.8 17.0 106 12-147 22-131 (1416)
332 COG3391 Uncharacterized conser 98.0 0.0088 1.9E-07 60.2 28.0 189 88-289 88-290 (381)
333 KOG1008 Uncharacterized conser 98.0 1.2E-06 2.6E-11 87.4 0.0 191 14-231 67-276 (783)
334 PF11768 DUF3312: Protein of u 98.0 7.1E-05 1.5E-09 74.9 11.3 73 115-189 257-331 (545)
335 PF14583 Pectate_lyase22: Olig 97.9 0.012 2.7E-07 57.3 25.9 224 33-286 16-276 (386)
336 PF00780 CNH: CNH domain; Int 97.9 0.01 2.3E-07 56.9 26.1 232 14-296 4-269 (275)
337 KOG1920 IkappaB kinase complex 97.9 0.0021 4.7E-08 69.6 22.1 189 86-284 80-324 (1265)
338 PF02897 Peptidase_S9_N: Proly 97.9 0.034 7.3E-07 57.0 30.5 240 10-287 128-409 (414)
339 PF11768 DUF3312: Protein of u 97.9 0.00025 5.4E-09 71.2 13.9 82 3-115 259-340 (545)
340 PF06433 Me-amine-dh_H: Methyl 97.9 0.013 2.8E-07 56.1 24.5 193 12-235 101-325 (342)
341 COG0823 TolB Periplasmic compo 97.9 0.0013 2.8E-08 66.5 19.0 157 116-285 191-361 (425)
342 COG0823 TolB Periplasmic compo 97.9 0.00049 1.1E-08 69.5 16.0 178 9-218 196-388 (425)
343 KOG2114 Vacuolar assembly/sort 97.9 0.002 4.4E-08 67.2 20.3 193 86-291 35-252 (933)
344 PF03178 CPSF_A: CPSF A subuni 97.9 0.011 2.3E-07 58.3 25.0 180 27-231 2-203 (321)
345 KOG3621 WD40 repeat-containing 97.8 0.00016 3.5E-09 73.6 11.8 154 9-189 37-199 (726)
346 KOG1008 Uncharacterized conser 97.8 5.7E-06 1.2E-10 82.7 0.6 197 67-282 58-275 (783)
347 PF06433 Me-amine-dh_H: Methyl 97.8 0.041 8.9E-07 52.7 27.8 245 12-291 42-329 (342)
348 KOG3617 WD40 and TPR repeat-co 97.8 0.00066 1.4E-08 70.4 14.8 107 121-230 19-131 (1416)
349 PF08596 Lgl_C: Lethal giant l 97.8 0.0091 2E-07 59.8 22.8 216 9-235 5-295 (395)
350 COG3386 Gluconolactonase [Carb 97.8 0.0057 1.2E-07 58.9 20.5 195 86-292 37-252 (307)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.037 8.1E-07 58.1 28.2 199 17-235 69-338 (527)
352 PF08625 Utp13: Utp13 specific 97.7 8.6E-06 1.9E-10 67.9 0.4 68 492-560 49-117 (141)
353 PF14583 Pectate_lyase22: Olig 97.7 0.023 4.9E-07 55.5 23.6 194 12-234 42-276 (386)
354 PF08553 VID27: VID27 cytoplas 97.7 0.0031 6.7E-08 67.6 19.2 142 86-229 493-646 (794)
355 PF03178 CPSF_A: CPSF A subuni 97.7 0.0055 1.2E-07 60.3 20.1 176 96-282 2-202 (321)
356 COG3391 Uncharacterized conser 97.7 0.018 3.9E-07 58.0 24.0 193 11-233 79-286 (381)
357 KOG1645 RING-finger-containing 97.6 0.00029 6.3E-09 66.9 9.3 93 141-234 175-270 (463)
358 PF06977 SdiA-regulated: SdiA- 97.5 0.073 1.6E-06 49.5 23.3 193 68-279 24-247 (248)
359 COG3386 Gluconolactonase [Carb 97.5 0.066 1.4E-06 51.7 23.8 143 118-272 111-275 (307)
360 KOG3621 WD40 repeat-containing 97.5 0.00076 1.6E-08 68.8 10.8 115 116-231 32-155 (726)
361 PF04192 Utp21: Utp21 specific 97.5 0.00048 1E-08 63.3 8.6 99 473-572 111-235 (237)
362 PF04053 Coatomer_WDAD: Coatom 97.5 0.013 2.7E-07 59.6 19.1 131 86-232 44-175 (443)
363 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0085 1.8E-07 47.1 13.6 95 13-142 10-109 (111)
364 PF05096 Glu_cyclase_2: Glutam 97.4 0.092 2E-06 48.6 22.4 175 12-218 51-249 (264)
365 KOG4640 Anaphase-promoting com 97.4 0.0006 1.3E-08 68.7 8.9 93 66-169 21-115 (665)
366 KOG4499 Ca2+-binding protein R 97.4 0.022 4.9E-07 50.6 17.0 204 86-298 27-257 (310)
367 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.15 3.3E-06 50.9 25.6 163 98-272 160-347 (353)
368 PF08596 Lgl_C: Lethal giant l 97.4 0.039 8.5E-07 55.3 21.0 211 2-228 85-333 (395)
369 PF06977 SdiA-regulated: SdiA- 97.4 0.13 2.7E-06 48.0 24.0 187 10-227 26-247 (248)
370 PRK13616 lipoprotein LpqB; Pro 97.3 0.053 1.2E-06 57.5 22.4 124 97-229 380-524 (591)
371 KOG2079 Vacuolar assembly/sort 97.2 0.0032 7E-08 67.5 12.0 99 86-186 99-202 (1206)
372 PF04841 Vps16_N: Vps16, N-ter 97.2 0.19 4.2E-06 51.0 24.5 97 125-228 186-285 (410)
373 PF02897 Peptidase_S9_N: Proly 97.2 0.33 7.2E-06 49.7 28.2 200 68-282 123-357 (414)
374 TIGR03074 PQQ_membr_DH membran 97.2 0.12 2.7E-06 56.3 24.0 198 86-291 194-486 (764)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.083 1.8E-06 52.9 20.7 75 161-235 309-403 (415)
376 PF05694 SBP56: 56kDa selenium 97.2 0.3 6.5E-06 48.4 23.9 139 97-235 158-347 (461)
377 COG3490 Uncharacterized protei 97.2 0.018 3.9E-07 52.8 14.4 125 87-217 81-243 (366)
378 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.3E-08 40.3 5.7 39 189-228 2-40 (40)
379 PF04841 Vps16_N: Vps16, N-ter 97.1 0.38 8.3E-06 48.9 26.4 34 199-233 216-249 (410)
380 KOG2395 Protein involved in va 97.1 0.0099 2.2E-07 59.0 13.1 149 16-187 344-500 (644)
381 COG3490 Uncharacterized protei 97.1 0.13 2.8E-06 47.4 19.1 180 86-280 125-346 (366)
382 PHA02713 hypothetical protein; 97.1 0.052 1.1E-06 57.6 19.3 182 86-284 304-535 (557)
383 KOG4640 Anaphase-promoting com 97.1 0.0029 6.2E-08 64.0 9.1 92 117-209 20-115 (665)
384 KOG4441 Proteins containing BT 97.0 0.081 1.8E-06 56.1 20.3 180 86-283 333-547 (571)
385 PF00780 CNH: CNH domain; Int 97.0 0.17 3.6E-06 48.6 20.7 140 86-234 7-169 (275)
386 smart00320 WD40 WD40 repeats. 96.9 0.0028 6E-08 39.0 5.5 32 114-145 9-40 (40)
387 KOG2395 Protein involved in va 96.8 0.084 1.8E-06 52.7 16.8 137 89-231 349-501 (644)
388 PRK13616 lipoprotein LpqB; Pro 96.7 0.083 1.8E-06 56.0 17.3 101 118-226 350-472 (591)
389 TIGR03074 PQQ_membr_DH membran 96.7 0.62 1.4E-05 51.0 24.1 206 17-235 194-482 (764)
390 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.14 2.9E-06 40.5 13.4 99 120-225 2-109 (111)
391 PF05096 Glu_cyclase_2: Glutam 96.4 0.84 1.8E-05 42.5 20.6 170 109-289 36-210 (264)
392 KOG1897 Damage-specific DNA bi 96.4 2 4.4E-05 46.7 27.7 240 9-289 587-863 (1096)
393 PF05694 SBP56: 56kDa selenium 96.3 1.2 2.6E-05 44.3 20.5 193 86-284 87-344 (461)
394 PHA03098 kelch-like protein; P 96.2 0.27 5.9E-06 52.3 18.0 141 86-233 295-467 (534)
395 KOG1897 Damage-specific DNA bi 96.2 2.6 5.6E-05 46.0 25.8 131 140-282 471-613 (1096)
396 KOG4499 Ca2+-binding protein R 96.2 0.17 3.8E-06 45.2 13.0 91 70-169 162-263 (310)
397 PF12234 Rav1p_C: RAVE protein 96.1 0.23 4.9E-06 52.4 15.7 98 89-186 43-155 (631)
398 PF14761 HPS3_N: Hermansky-Pud 96.1 0.5 1.1E-05 42.2 15.4 137 87-229 29-213 (215)
399 PF14870 PSII_BNR: Photosynthe 96.0 1.5 3.3E-05 42.1 20.4 153 115-279 142-301 (302)
400 PHA02713 hypothetical protein; 95.9 0.31 6.7E-06 51.8 16.0 141 86-233 352-536 (557)
401 COG3204 Uncharacterized protei 95.8 1.5 3.2E-05 41.1 17.8 156 68-232 88-265 (316)
402 KOG4441 Proteins containing BT 95.8 0.64 1.4E-05 49.4 17.9 184 86-284 285-501 (571)
403 KOG2079 Vacuolar assembly/sort 95.6 0.063 1.4E-06 58.1 9.6 100 128-230 98-203 (1206)
404 PHA02790 Kelch-like protein; P 95.6 1.1 2.3E-05 46.8 18.7 179 86-284 272-472 (480)
405 KOG2444 WD40 repeat protein [G 95.5 0.035 7.5E-07 49.4 5.9 140 88-231 32-178 (238)
406 PF12894 Apc4_WD40: Anaphase-p 95.4 0.041 8.8E-07 36.1 4.7 33 4-39 12-44 (47)
407 PHA03098 kelch-like protein; P 95.4 1 2.2E-05 47.9 18.2 143 86-233 343-514 (534)
408 PF12894 Apc4_WD40: Anaphase-p 95.2 0.078 1.7E-06 34.8 5.6 35 116-151 10-44 (47)
409 COG5167 VID27 Protein involved 95.2 0.42 9.2E-06 47.7 12.9 153 12-187 474-632 (776)
410 COG3204 Uncharacterized protei 95.1 2.2 4.7E-05 40.0 16.4 118 114-232 82-212 (316)
411 KOG2444 WD40 repeat protein [G 95.0 0.09 1.9E-06 46.9 6.9 102 86-187 70-177 (238)
412 PHA02790 Kelch-like protein; P 94.9 2.1 4.6E-05 44.7 18.4 140 86-233 319-473 (480)
413 PF14870 PSII_BNR: Photosynthe 94.9 3.8 8.3E-05 39.4 20.4 138 86-227 156-301 (302)
414 COG1520 FOG: WD40-like repeat 94.9 3.7 8.1E-05 41.2 19.7 202 86-292 68-278 (370)
415 PRK13684 Ycf48-like protein; P 94.9 4.4 9.6E-05 40.0 20.3 151 117-281 172-330 (334)
416 PF15390 DUF4613: Domain of un 94.8 1.2 2.6E-05 45.7 15.0 145 118-280 20-184 (671)
417 COG3823 Glutamine cyclotransfe 94.6 2.4 5.2E-05 37.5 14.4 172 16-218 55-247 (262)
418 PF10647 Gmad1: Lipoprotein Lp 94.4 4.6 0.0001 38.0 21.5 93 86-178 77-184 (253)
419 TIGR03118 PEPCTERM_chp_1 conse 94.3 5 0.00011 38.0 20.5 212 6-233 23-282 (336)
420 KOG1916 Nuclear protein, conta 94.2 0.05 1.1E-06 57.7 4.0 118 67-192 182-328 (1283)
421 KOG3630 Nuclear pore complex, 94.0 0.28 6.1E-06 53.7 9.3 153 9-178 104-262 (1405)
422 PRK10115 protease 2; Provision 94.0 12 0.00025 41.2 31.5 188 11-230 132-344 (686)
423 PF10647 Gmad1: Lipoprotein Lp 94.0 5.5 0.00012 37.5 21.9 113 119-231 67-198 (253)
424 KOG2377 Uncharacterized conser 94.0 3.6 7.8E-05 40.9 15.7 147 86-232 33-187 (657)
425 PF10168 Nup88: Nuclear pore c 93.9 3.5 7.5E-05 45.0 17.5 35 115-149 144-181 (717)
426 PF14781 BBS2_N: Ciliary BBSom 93.7 3 6.4E-05 34.3 12.4 108 122-233 3-128 (136)
427 PRK10115 protease 2; Provision 93.6 13 0.00029 40.7 25.2 98 86-186 138-254 (686)
428 PF10168 Nup88: Nuclear pore c 93.5 2.5 5.5E-05 46.0 15.6 27 119-146 86-112 (717)
429 PF09384 UTP15_C: UTP15 C term 93.3 0.17 3.8E-06 42.9 5.3 84 492-576 62-147 (148)
430 PF12234 Rav1p_C: RAVE protein 93.3 3.8 8.3E-05 43.4 15.9 113 160-280 30-154 (631)
431 PF15390 DUF4613: Domain of un 93.3 4.9 0.00011 41.4 15.9 116 116-232 55-188 (671)
432 TIGR02604 Piru_Ver_Nterm putat 93.1 3.6 7.9E-05 41.2 15.4 60 118-178 124-202 (367)
433 PF03022 MRJP: Major royal jel 93.0 8.9 0.00019 36.9 20.0 134 97-232 35-217 (287)
434 KOG1916 Nuclear protein, conta 92.6 0.33 7.1E-06 51.8 7.0 137 96-233 153-326 (1283)
435 COG4257 Vgb Streptogramin lyas 92.4 9.4 0.0002 35.5 16.2 177 86-284 73-264 (353)
436 PF02333 Phytase: Phytase; In 92.3 13 0.00028 37.0 22.6 191 16-232 67-292 (381)
437 TIGR02604 Piru_Ver_Nterm putat 92.3 8.3 0.00018 38.7 16.6 100 118-218 14-142 (367)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 92.2 1.4 3E-05 44.4 10.6 80 118-197 308-408 (415)
439 PF08728 CRT10: CRT10; InterP 92.1 4.8 0.0001 43.2 14.8 101 86-186 114-245 (717)
440 PF07569 Hira: TUP1-like enhan 91.8 1 2.2E-05 41.3 8.6 29 125-153 18-46 (219)
441 PRK13684 Ycf48-like protein; P 91.8 14 0.00031 36.4 19.4 111 115-229 212-330 (334)
442 PLN02193 nitrile-specifier pro 91.7 19 0.00041 37.6 19.5 143 86-233 176-354 (470)
443 PF07995 GSDH: Glucose / Sorbo 91.5 15 0.00033 36.1 26.6 29 9-39 5-33 (331)
444 PF10313 DUF2415: Uncharacteri 91.3 1 2.2E-05 28.7 5.5 32 118-149 1-35 (43)
445 COG5167 VID27 Protein involved 91.2 3.6 7.9E-05 41.5 12.0 135 92-232 486-634 (776)
446 KOG3630 Nuclear pore complex, 91.2 3.8 8.1E-05 45.5 13.0 125 92-218 119-262 (1405)
447 PF07250 Glyoxal_oxid_N: Glyox 91.2 2.3 5E-05 39.4 10.2 140 142-290 49-205 (243)
448 KOG4460 Nuclear pore complex, 90.8 6.8 0.00015 39.8 13.3 94 119-233 105-201 (741)
449 KOG1900 Nuclear pore complex, 90.8 3.9 8.5E-05 46.1 12.9 146 23-188 95-273 (1311)
450 PLN00033 photosystem II stabil 90.1 23 0.0005 35.8 17.0 107 116-227 279-396 (398)
451 PLN00033 photosystem II stabil 90.1 23 0.0005 35.8 18.7 144 121-279 242-396 (398)
452 PLN02153 epithiospecifier prot 89.9 22 0.00047 35.2 20.0 103 86-190 33-170 (341)
453 PF07676 PD40: WD40-like Beta 89.4 1.8 3.9E-05 26.9 5.7 33 195-227 4-38 (39)
454 PF10313 DUF2415: Uncharacteri 89.3 1.2 2.6E-05 28.3 4.6 32 4-37 1-35 (43)
455 PF10214 Rrn6: RNA polymerase 89.0 43 0.00093 37.4 21.4 115 65-188 145-277 (765)
456 PF07569 Hira: TUP1-like enhan 88.9 2.6 5.7E-05 38.6 8.7 61 86-147 22-95 (219)
457 PF11715 Nup160: Nucleoporin N 88.7 6.5 0.00014 41.9 12.9 73 86-158 158-259 (547)
458 PF10395 Utp8: Utp8 family; I 88.2 29 0.00063 37.1 16.5 173 3-196 129-314 (670)
459 TIGR03548 mutarot_permut cycli 88.1 28 0.00061 34.1 18.7 103 128-233 72-197 (323)
460 TIGR02276 beta_rpt_yvtn 40-res 86.9 3.6 7.9E-05 25.8 6.1 40 127-167 1-41 (42)
461 KOG2280 Vacuolar assembly/sort 86.8 49 0.0011 35.6 18.2 145 86-234 94-250 (829)
462 KOG4659 Uncharacterized conser 86.7 67 0.0014 37.0 20.3 26 158-183 660-685 (1899)
463 TIGR03118 PEPCTERM_chp_1 conse 86.4 31 0.00067 32.9 19.4 198 86-290 34-287 (336)
464 PF14761 HPS3_N: Hermansky-Pud 86.4 25 0.00054 31.7 16.5 101 130-233 29-166 (215)
465 PF10214 Rrn6: RNA polymerase 85.9 51 0.0011 36.8 18.0 112 118-232 146-278 (765)
466 COG3823 Glutamine cyclotransfe 85.9 25 0.00055 31.4 14.0 157 122-289 50-211 (262)
467 KOG2247 WD40 repeat-containing 85.7 0.15 3.2E-06 50.6 -1.4 142 8-178 37-178 (615)
468 KOG2280 Vacuolar assembly/sort 85.7 13 0.00029 39.6 12.2 89 179-279 64-152 (829)
469 TIGR02276 beta_rpt_yvtn 40-res 85.4 4.1 8.8E-05 25.6 5.8 38 169-207 1-41 (42)
470 PF14781 BBS2_N: Ciliary BBSom 85.3 20 0.00043 29.6 13.2 112 166-288 5-131 (136)
471 PF12768 Rax2: Cortical protei 83.9 32 0.00069 32.8 13.3 93 96-190 16-126 (281)
472 PF08728 CRT10: CRT10; InterP 83.6 71 0.0015 34.7 16.9 80 199-281 163-245 (717)
473 PF12657 TFIIIC_delta: Transcr 83.6 9.6 0.00021 33.4 9.2 25 161-185 6-30 (173)
474 PF07995 GSDH: Glucose / Sorbo 83.6 32 0.0007 33.8 13.9 109 161-275 3-136 (331)
475 PRK14131 N-acetylneuraminic ac 83.5 52 0.0011 33.1 20.6 13 97-109 107-119 (376)
476 KOG1983 Tomosyn and related SN 83.5 43 0.00093 38.4 16.2 72 198-286 197-268 (993)
477 KOG1898 Splicing factor 3b, su 82.0 94 0.002 35.0 16.9 170 98-281 855-1047(1205)
478 KOG1900 Nuclear pore complex, 81.8 80 0.0017 36.4 16.8 139 92-232 95-274 (1311)
479 PF03022 MRJP: Major royal jel 81.0 54 0.0012 31.5 18.1 137 140-283 35-216 (287)
480 COG4590 ABC-type uncharacteriz 80.9 7.3 0.00016 38.8 7.8 144 86-233 232-389 (733)
481 PF05935 Arylsulfotrans: Aryls 80.5 78 0.0017 33.1 17.4 102 96-199 167-313 (477)
482 KOG2247 WD40 repeat-containing 80.4 0.23 5.1E-06 49.3 -2.4 135 87-227 47-185 (615)
483 COG4257 Vgb Streptogramin lyas 80.4 52 0.0011 30.9 19.2 133 97-233 125-265 (353)
484 KOG2377 Uncharacterized conser 78.6 79 0.0017 32.0 15.2 120 2-149 65-187 (657)
485 COG4590 ABC-type uncharacteriz 77.9 29 0.00063 34.8 10.7 164 4-192 221-391 (733)
486 PF08801 Nucleoporin_N: Nup133 77.4 74 0.0016 32.6 14.6 32 200-232 190-221 (422)
487 COG1520 FOG: WD40-like repeat 77.0 84 0.0018 31.5 25.4 154 16-198 111-279 (370)
488 PF07676 PD40: WD40-like Beta 76.8 3.5 7.5E-05 25.5 3.0 26 346-371 5-30 (39)
489 PF03088 Str_synth: Strictosid 76.7 22 0.00048 27.1 7.8 43 135-178 33-75 (89)
490 PF11635 Med16: Mediator compl 75.8 94 0.002 34.7 15.5 88 66-155 181-297 (753)
491 PF13449 Phytase-like: Esteras 75.6 85 0.0018 30.8 17.8 102 116-218 18-165 (326)
492 PF14727 PHTB1_N: PTHB1 N-term 74.9 1E+02 0.0022 31.4 21.1 182 86-283 145-361 (418)
493 PF07250 Glyoxal_oxid_N: Glyox 74.4 75 0.0016 29.6 14.0 115 86-200 78-210 (243)
494 TIGR03606 non_repeat_PQQ dehyd 73.2 1E+02 0.0022 31.8 13.8 100 117-218 29-164 (454)
495 smart00564 PQQ beta-propeller 72.7 9.7 0.00021 22.3 4.2 27 86-112 6-32 (33)
496 KOG1896 mRNA cleavage and poly 72.0 1.9E+02 0.0042 33.3 22.1 141 86-232 1046-1215(1366)
497 PF01731 Arylesterase: Arylest 71.9 25 0.00054 26.6 7.0 50 179-231 36-85 (86)
498 TIGR03548 mutarot_permut cycli 71.9 1E+02 0.0022 30.1 17.6 104 86-191 73-198 (323)
499 smart00564 PQQ beta-propeller 71.7 9.3 0.0002 22.3 3.9 25 131-155 8-32 (33)
500 PF11715 Nup160: Nucleoporin N 71.5 8.1 0.00018 41.2 6.0 35 10-44 219-257 (547)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-50 Score=395.90 Aligned_cols=504 Identities=18% Similarity=0.231 Sum_probs=369.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCC-CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+..+| ..++|+..|+++|.|+.. |++-||++++...+...++|...+.++.|+++
T Consensus 306 s~~~I--~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD---------------------- 361 (893)
T KOG0291|consen 306 SDQKI--LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD---------------------- 361 (893)
T ss_pred cccee--eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence 45678 666999999999999864 89999999999998888889888888888888
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++|+.||+|+|||...|-|+.++ ..|++.|+.+.|+..|+.+++.+.||+|+.||+..++..++|.....
T Consensus 362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 362 -----GQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred -----CcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 999999999999999999999999887 57999999999999999999999999999999999999999987654
Q ss_pred -CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 161 -~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
...|++..|.|.++++|+ -.|++|++++|+.+..+.||.+||.++.|+|.+..|++++ +|++|++||+-.....
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT- 513 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence 788999999999999998 4899999999999999999999999999999999999887 9999999999776322
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
+.++......+ .+.|. |+|+.|++++.||.|.+||.+.+.++..+.+.+......- ..+...+...-..
T Consensus 514 ---vEtl~i~sdvl-~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~--~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 514 ---VETLEIRSDVL-AVSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK--ETDRITAENSAKG 582 (893)
T ss_pred ---eeeEeecccee-EEEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc--ccceeehhhcccC
Confidence 33455554444 45565 9999999999999999999999988877766554333211 0010000000011
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEE----ecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCC
Q 008058 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKI----LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRAN 390 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~ 390 (579)
-.+..+.|++||.++++.|...+-|+-.+ .... ...+.+.|-||... .-+..++.+.+|. +++ ++..
T Consensus 583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk-fqiS~N~sLdg~~e-----fln~rkmtEfG~~~LiD~-e~~~ 655 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK-FQISDNRSLDGVLE-----FLNRRKMTEFGNMDLIDT-EESD 655 (893)
T ss_pred CceEEEEEcCCCCEEEecCCcccEEEEECchhheeee-EEeccccchhHHHH-----HhccccccccCCcccccc-cccc
Confidence 12334566667777777665554333221 1111 23334455555544 3345566666543 222 1111
Q ss_pred c---cccccCCccccchhhhhhccccCC----CCcc-ccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCC
Q 008058 391 A---EDAVLPLPKILDSYDKKNRHQNLS----SDLD-EVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI 462 (579)
Q Consensus 391 ~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~ 462 (579)
. .+..+|+.+.++.+.|+.|+..+- +.+. -.-+..++++..+.++.+.- ..++-+-+.+.|.+.-.+++..
T Consensus 656 ~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~-~FDPf~LD~~vTPe~v~~al~~ 734 (893)
T KOG0291|consen 656 LEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTI-LFDPFDLDVDVTPESVREALRE 734 (893)
T ss_pred ccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCce-EEcccccccccCHHHHHHHHhc
Confidence 1 245799999999888876663110 0000 00022345555555554331 2222333345555555555533
Q ss_pred CCCCCCCCCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 008058 463 LSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF 533 (579)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ 533 (579)
..+..+|+.+| +++...|.+.|+.++..||..|+.+||++|++.+ .++.+.+++++|+++
T Consensus 735 ----------qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l-~~s~HieF~l~W~~~ 803 (893)
T KOG0291|consen 735 ----------QEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFL-ENSPHIEFYLRWLRA 803 (893)
T ss_pred ----------chHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHH-hcCchHHHHHHHHHH
Confidence 35677788888 3667789999999999999999999999999644 555568899999999
Q ss_pred HHHHhcccccCCCC-hhHHHHHHHHHHHHhhhhhh
Q 008058 534 ILVNHGHHLLSQES-LTPMLSSLYKVRKKKLFASA 567 (579)
Q Consensus 534 ll~~h~~~l~s~~~-l~~~l~~l~~~~~~r~~~~~ 567 (579)
||.+||.++..... +.++|..|++.|.+..+.+.
T Consensus 804 il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~ 838 (893)
T KOG0291|consen 804 ILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLS 838 (893)
T ss_pred HHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHH
Confidence 99999999988774 56799999999987774433
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-47 Score=344.97 Aligned_cols=323 Identities=17% Similarity=0.216 Sum_probs=278.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| +|++|+|+|.+||+|+.|.++|+||+.+.....+.++|...+.++.|+|+
T Consensus 114 H~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD----------------------- 168 (480)
T KOG0271|consen 114 HGEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD----------------------- 168 (480)
T ss_pred CCCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-----------------------
Confidence 35788 99999999999999999999999999999999999988877776655555
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
+..|++|+.+|+|++||+.+|+.+.+.+.+|...|++++|.| ..++|++++.||.|+|||+..++++..+.
T Consensus 169 ----gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 169 ----GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred ----cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 888999999999999999999999888899999999999976 56789999999999999999999999999
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----------cCCCE----------
Q 008058 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGKY---------- 213 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-----------~~~~~---------- 213 (579)
+|..+|+|+.|-.+ .++++|+ ++|++|+...|.++++++||...|+.++.+ |.+++
T Consensus 245 gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 245 GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred cCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 99999999999755 4888888 899999999999999999999999999776 33444
Q ss_pred ---------------EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 214 ---------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 214 ---------------l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
|++++ +|.++.+|+....++ ++..+..+...+..+.|+ ||+++||+++.|..|++
T Consensus 324 Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kk----pi~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKK----PITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKL 393 (480)
T ss_pred HHHHHHHhhccCcceeEEec-CCceEEEeccccccc----chhhhhchhhheeeEEEC-----CCccEEEEeecccceee
Confidence 88887 799999999876543 344566777778888898 99999999999999999
Q ss_pred EECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008058 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
||..+|+.+..+.++...+-... ++.+.+ .+++++.|..++.++.. .+.....+-||..+|.++.|+
T Consensus 394 W~g~tGk~lasfRGHv~~VYqva-wsaDsR----LlVS~SkDsTLKvw~V~--------tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVA-WSADSR----LLVSGSKDSTLKVWDVR--------TKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEE-eccCcc----EEEEcCCCceEEEEEee--------eeeecccCCCCCceEEEEEec
Confidence 99999999988877655444333 566766 89999999866665422 233344667899999999999
Q ss_pred CCcceeeccccceeccccee
Q 008058 359 QDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~ 378 (579)
|||..+ +||+.|+.+++|.
T Consensus 461 pDG~rV-~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRV-ASGGKDKVLRLWR 479 (480)
T ss_pred CCCcee-ecCCCceEEEeec
Confidence 999999 9999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-47 Score=373.03 Aligned_cols=507 Identities=17% Similarity=0.188 Sum_probs=390.9
Q ss_pred CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 1 ~~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++++|| +.++|+|.|..+|+|+.||.++|||+..+.+.+.|++|++.+..+.|.+...
T Consensus 103 ~He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~-------------------- 160 (775)
T KOG0319|consen 103 IHEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN-------------------- 160 (775)
T ss_pred ccCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc--------------------
Confidence 368999 8889999999999999999999999999999999999999999888887610
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee----
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---- 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---- 156 (579)
...|++|..|+.+++||+.+..........|.+.|+++.|.+|+..+++++.|..+.+||+.+.+..+++.
T Consensus 161 -----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~ 235 (775)
T KOG0319|consen 161 -----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES 235 (775)
T ss_pred -----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh
Confidence 34689999999999999997655223446799999999999999999999999999999985432211110
Q ss_pred --------------------------------------------------------------------------------
Q 008058 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence
Q ss_pred -----------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008058 157 -----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (579)
Q Consensus 157 -----------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~ 187 (579)
+|...|.+++...+|-+|++|+ +++++|.+.
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 5667777777666788899998 799999774
Q ss_pred CC----eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeEE----eeecCceeeEeEEecCC
Q 008058 188 DH----KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 188 ~~----~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 258 (579)
++ -++....+|.+.|.+++++..+. +|+++| .|+++++|++...+.......+ +...|+..++++..+
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-- 472 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-- 472 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEec--
Confidence 43 23556689999999999987665 556655 8999999999884432222222 344677788899998
Q ss_pred cccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCC
Q 008058 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338 (579)
Q Consensus 259 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~ 338 (579)
|+.+.||+||.|.+.+||+++.+..+..+.+++..+.+.. |++..+ .+++++.|+.+++|. ...
T Consensus 473 ---~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-Fs~~dq----~laT~SgD~TvKIW~--------is~ 536 (775)
T KOG0319|consen 473 ---PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-FSKNDQ----LLATCSGDKTVKIWS--------IST 536 (775)
T ss_pred ---CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-eccccc----eeEeccCCceEEEEE--------ecc
Confidence 9999999999999999999999999999999998888877 788877 899999998777633 456
Q ss_pred CceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccCCccccchhhhhhccccCCC
Q 008058 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS 416 (579)
Q Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (579)
+.|.+++.||+..|..+.|-.+|.+| +|++.||.+|+|++++. ..+++.. +|+.|+....- .
T Consensus 537 fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD~H--~DrvWaL~~~~-~------------ 600 (775)
T KOG0319|consen 537 FSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLDAH--NDRVWALSVSP-L------------ 600 (775)
T ss_pred ceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhhhc--cceeEEEeecC-c------------
Confidence 78899999999999999999999999 99999999999999754 5566532 35555433321 0
Q ss_pred CccccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCCCCCCCCCCCCchhhhhhccce---e----ecccC
Q 008058 417 DLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----FETNI 489 (579)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l---~----l~~~~ 489 (579)
. .+...-+.+..+.-|++.+++++.++.+.++.-.+|-++|....-.+.+..|.-|+..|..+. . +.+.+
T Consensus 601 ~---~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r 677 (775)
T KOG0319|consen 601 L---DMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRER 677 (775)
T ss_pred c---ceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcC
Confidence 0 011111445567778877766655555444444455555554434555666666666666655 2 33445
Q ss_pred ChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-hcccccCCCChhHHHHHHHHHHHH---hh--
Q 008058 490 PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN-HGHHLLSQESLTPMLSSLYKVRKK---KL-- 563 (579)
Q Consensus 490 ~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~-h~~~l~s~~~l~~~l~~l~~~~~~---r~-- 563 (579)
+++.+..+|.+|......-||+++. .|++|++++...++.|+.+|.. -...|+..|....+++.|.-..++ |+
T Consensus 678 ~~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~ 756 (775)
T KOG0319|consen 678 DPEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDR 756 (775)
T ss_pred CcHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHH
Confidence 6889999999999999999999999 8999999999999999999985 456688999888888888877664 33
Q ss_pred --hhhhhhhcee
Q 008058 564 --FASAFTCFIL 573 (579)
Q Consensus 564 --~~~~~~~~~~ 573 (579)
+.+++..|..
T Consensus 757 ~~~~~~lLdf~~ 768 (775)
T KOG0319|consen 757 LVQDSALLDFTW 768 (775)
T ss_pred HhhhhHHHHHhh
Confidence 5556666543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.8e-45 Score=335.05 Aligned_cols=281 Identities=19% Similarity=0.218 Sum_probs=252.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.|| ..|.||+|++.|||||.+|.++||+..+...++.|.+|...+. ++.|.|..
T Consensus 175 ~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~------------------~~~fhP~~----- 229 (459)
T KOG0272|consen 175 TRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVG------------------AAVFHPVD----- 229 (459)
T ss_pred CCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccccee------------------eEEEccCC-----
Confidence 5788 7789999999999999999999999999999999997776555 44555542
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.+..+++|+.||++++|++.+...+..+ .+|...|..++|+|+|++|.+++.|.+-++||+.++..+....+|..+|
T Consensus 230 --~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 230 --SDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred --CccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc
Confidence 0557999999999999999998887666 6899999999999999999999999999999999999988899999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|||.++++|+ ..-+|||+++|+++..+.+|..+|.++.|+|+|..+++|| .|++++|||++.... +
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~-----l 380 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE-----L 380 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc-----c
Confidence 9999999999999999 7889999999999999999999999999999999999988 699999999998763 5
Q ss_pred EeeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
+++..+...++-+.|+ | .|.+|++++.|++++||...+...++
T Consensus 381 y~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k------------------------------- 424 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK------------------------------- 424 (459)
T ss_pred eecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch-------------------------------
Confidence 7888888899999998 6 78999999999999999766554432
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+.||++.|.++..++||+++ +|+|.|+++|+|.
T Consensus 425 ------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 ------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR 458 (459)
T ss_pred ------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence 445899999999999999999 9999999999994
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-43 Score=343.12 Aligned_cols=427 Identities=19% Similarity=0.249 Sum_probs=318.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.||.+ +||.|...+++|+ .+.++||+..+.+|+.++... ..-|..+.|.
T Consensus 373 R~dVRsl--~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg------ 423 (888)
T KOG0306|consen 373 RSDVRSL--CVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG------ 423 (888)
T ss_pred hhheeEE--EeecCceeeeecC-CCcEEEEEccCcceeEEeccc--------------------cEEEEEecCC------
Confidence 4578666 9999988888877 468999999999999988632 2234444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----Ccee-----
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLL----- 152 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~----- 152 (579)
+.++++|..+|.+.+||+.....+.++ .+|.+.|++++.+||++.+++||.|.+|++||..- |...
T Consensus 424 ---d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 424 ---DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ---CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 788999999999999999999887555 58999999999999999999999999999999741 2211
Q ss_pred ---eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 153 ---GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 153 ---~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
++++ -...|.|+.+||||++|+++- ++++||-+.+-+...++.||.-||.+|.++||++.+++|| .|++|++|
T Consensus 500 ~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiW 577 (888)
T KOG0306|consen 500 KHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIW 577 (888)
T ss_pred ccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEe
Confidence 1222 346899999999999999998 8999999999999999999999999999999999999988 79999999
Q ss_pred EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccc
Q 008058 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (579)
-++-|.+. ..+-.|...+.++.|- |....+++++.||.++-||.+..+.+
T Consensus 578 GLdFGDCH-----KS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i-------------------- 627 (888)
T KOG0306|consen 578 GLDFGDCH-----KSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI-------------------- 627 (888)
T ss_pred ccccchhh-----hhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh--------------------
Confidence 99998743 4555566666677777 89999999999999999987555433
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeec
Q 008058 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALD 387 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~ 387 (579)
+++.+|..+|++++.+|+|.++ +|+|+|.+|++|+..+..-.++
T Consensus 628 -----------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 628 -----------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred -----------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceeee
Confidence 2455888899999999999999 9999999999999865444343
Q ss_pred cCCccccccCCccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcc--ccccc-------CCcCCCHHHHHH
Q 008058 388 RANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDK--VEVEA-------DSQTVCMEDRLR 458 (579)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~-------~~~~~~~~~~l~ 458 (579)
+..+.+.. ... +....+.|...++ .+.+. -+....-+..++
T Consensus 672 eekE~ErE-------e~y-----------------------E~l~~~~e~~~~~~~~~g~~~~~skkTieSvk~aE~i~e 721 (888)
T KOG0306|consen 672 EEKEGERE-------EEY-----------------------ETLLASEEVVAGDGSADGDAGVASKKTIESVKSAERILE 721 (888)
T ss_pred hhhhhhhH-------HHH-----------------------HHhhhhcccccCCCcccccccchhhhhhHHHHHHHHHHH
Confidence 21110000 000 0000000000000 00000 000011122234
Q ss_pred hcCCCC----CCCCC-CCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCc
Q 008058 459 SLGILS----NKDDL-LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524 (579)
Q Consensus 459 ~l~~~~----~~~~~-~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~ 524 (579)
++++.. +..+. ++ .+. .++++|+ +.+..++...++.++.-||++|++.+|+++.+ +..++.+.
T Consensus 722 a~di~~~e~~~~ee~~~g-~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~-~~q~~~~v 798 (888)
T KOG0306|consen 722 ALDIGREELTQLEEYSPG-HPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE-CIQRKSKV 798 (888)
T ss_pred HHHHHHHHHHhHHhhcCC-CCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH-HHcCCCcc
Confidence 444221 11111 11 122 4666666 34455678899999999999999999999984 55556779
Q ss_pred chhHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHhh
Q 008058 525 KNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563 (579)
Q Consensus 525 ~~~~~wl~~ll~~h~~~l~s~~~l~~~l~~l~~~~~~r~ 563 (579)
+++++.+.+|++.|.+++.+.++++|.|+.+...++..+
T Consensus 799 eLv~rv~~fL~rih~~~it~~~~~kp~l~~i~s~l~~~v 837 (888)
T KOG0306|consen 799 ELVCRVLFFLLRIHHKQITAHKNMKPLLEKIKSKLREIV 837 (888)
T ss_pred eeEeeeeeehhhhhhhhhccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-40 Score=301.15 Aligned_cols=274 Identities=20% Similarity=0.267 Sum_probs=220.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~ 164 (579)
+..|++|+.|.++++||+.+.....+. ++|...|.|++|+|||+.|++|+.||+|++||..+|+++. .+.+|...|++
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~ 205 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA 205 (480)
T ss_pred CceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence 888999999999999999999888666 7899999999999999999999999999999999987654 59999999999
Q ss_pred EEEcc-----CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 165 MAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 165 l~~~p-----~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
++|.| ..++|++++ |.|+|||+..++++..+.+|+.+|+|+.|--+| ++++++ .|++|++|+...+...
T Consensus 206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS-~DrtIkvw~a~dG~~~-- 281 (480)
T KOG0271|consen 206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS-QDRTIKVWRALDGKLC-- 281 (480)
T ss_pred EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC-CCceEEEEEccchhHH--
Confidence 99976 677899998 999999999999999999999999999997665 677765 8999999999887633
Q ss_pred eeEEeeecCceeeEeEEec------CCcccCCCc-------------------------EEEEEEcCCeEEEEECCCce-
Q 008058 238 SCVLAMEHPAVFMDCRCID------NGGVDDAGL-------------------------YVLAISETGVCYIWYGQNIE- 285 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------------------------~l~s~~~dg~i~iwd~~~~~- 285 (579)
..+..+...++.++.+ ...|+|.++ .+++|++|+++.+|+....+
T Consensus 282 ---r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 282 ---RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred ---HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 2333333333333322 111224343 59999999999999865543
Q ss_pred eecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008058 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (579)
.+....++...+.... |+|+++ +|++|+||..+++|+|. ....+.++.||-..|..++||.|.++|
T Consensus 359 pi~rmtgHq~lVn~V~-fSPd~r----~IASaSFDkSVkLW~g~--------tGk~lasfRGHv~~VYqvawsaDsRLl- 424 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVS-FSPDGR----YIASASFDKSVKLWDGR--------TGKFLASFRGHVAAVYQVAWSADSRLL- 424 (480)
T ss_pred chhhhhchhhheeeEE-ECCCcc----EEEEeecccceeeeeCC--------CcchhhhhhhccceeEEEEeccCccEE-
Confidence 3333333333333222 899999 99999999988886632 223344788999999999999999999
Q ss_pred ccccceecccceeeee
Q 008058 366 MSQSLLKSKRGRYVQN 381 (579)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (579)
+|||.|.++|+|++..
T Consensus 425 VS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEcCCCceEEEEEeee
Confidence 9999999999999953
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=279.46 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=248.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.| .++.|++|.++++++|.||.+.|||.-+...++.++-+...+...+|+|.
T Consensus 55 ~~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------ 108 (343)
T KOG0286|consen 55 LNKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------ 108 (343)
T ss_pred ccce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC------------------------
Confidence 3567 67799999999999999999999999999988888877777777777776
Q ss_pred ccCCcEEEEEECCCeEEEEEccCC--e---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~--~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
+++++.|+-|+...||++.+. + .+.+.+.+|++-+.|+.|-+|+ .|++++.|.+..+||+++|+.+..|.+
T Consensus 109 ---g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 109 ---GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ---CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecC
Confidence 899999999999999999854 2 3445568999999999998854 789999999999999999999999999
Q ss_pred CCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 158 STKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 158 ~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
|.+.|.+++++| +++.+++|+ +..++||++.+.++++|.+|.+.|+++.|.|+|.-|++++ +|++.++||++..+.
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQE 263 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcE
Confidence 999999999999 999999998 8999999999999999999999999999999999999987 799999999999875
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
. .++..+.....+..+.|+ ..|++|++|..|.++.+||.-.++.+
T Consensus 264 ~---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~v--------------------------- 308 (343)
T KOG0286|consen 264 L---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGERV--------------------------- 308 (343)
T ss_pred E---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccceE---------------------------
Confidence 5 555555556667888888 89999999999999999995333221
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
-.+.||++.|.++..+|||.-+ +|||.|.++|+|.
T Consensus 309 ----------------------------g~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ----------------------------GVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA 343 (343)
T ss_pred ----------------------------EEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence 1455899999999999999999 9999999999994
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=253.53 Aligned_cols=272 Identities=14% Similarity=0.210 Sum_probs=220.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (579)
-+|+++|.|.+||+|...+|.|..+++...+.++.+...++ +.. +++.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~~-LAaa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KKD-LAAAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cch-hhhccCCe
Confidence 48999999999999999999999999877666666666555 333 44455678
Q ss_pred EEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008058 98 VLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 98 i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
|++||+.++.. ....+.+|+..|+++.|..+|+.+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++
T Consensus 63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis 141 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELIS 141 (311)
T ss_pred eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEe
Confidence 99999998765 333447899999999999999999999999999999999877766666 6789999999999999999
Q ss_pred EC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-ceeEEeee-cCceeeE
Q 008058 177 AA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFMD 251 (579)
Q Consensus 177 ~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~~ 251 (579)
|+ |.|++||+.+..+...+ +.-..+|.++...|||++++.+. ..|..++|++-.....+ ..++..+. |....+.
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 98 99999999988666555 34457899999999999998876 68999999997754322 22333344 4444555
Q ss_pred eEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEE
Q 008058 252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTF 331 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (579)
|. ++ ||+++|++++.|.+++||+.++. +..
T Consensus 221 C~-lS-----Pd~k~lat~ssdktv~iwn~~~~--~kl------------------------------------------ 250 (311)
T KOG0315|consen 221 CL-LS-----PDVKYLATCSSDKTVKIWNTDDF--FKL------------------------------------------ 250 (311)
T ss_pred EE-EC-----CCCcEEEeecCCceEEEEecCCc--eee------------------------------------------
Confidence 44 55 99999999999999999987655 110
Q ss_pred EEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 332 VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 332 ~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
-..+.+|...++.++||.||+|| +++|.|+..++|++.
T Consensus 251 ----------e~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 251 ----------ELVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLS 288 (311)
T ss_pred ----------EEEeecCCceEEeeeeccCccEE-EecCCCCceeecccc
Confidence 01455788899999999999999 999999999999985
No 9
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=286.12 Aligned_cols=475 Identities=31% Similarity=0.402 Sum_probs=327.1
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeec-----------cccccc
Q 008058 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-----------DRKKKR 82 (579)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----------~~~~~~ 82 (579)
+|-+.|+|....||.++||+...++...+|.. ..+++..+++..|.-. ....+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p---------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP---------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc---------------chhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 45668999999999999999999999988862 3555666777777521 111222
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+...++.|+..|.|.+|+...|+....+. ..|.++|.++.++.+-..|++++.|+.+..|+..+++.++.+++....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 3357789999999999999999999988876 679999999999999899999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecC-----CCEEEEEecCCCeEEEEEcCC-Cccc
Q 008058 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ 235 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s~s~~d~~i~vwd~~~-~~~~ 235 (579)
+.+++++|||.++++++++|++||+++++.+.+|+||.++|+++.|..+ |.+++++...++-+.+|-+.. .+..
T Consensus 147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 9999999999999999999999999999999999999999999999877 788888776778899998876 4444
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
...+.+..++.+.......-. +..+.+.++.+..+.+..|...+...+...++.++.....+ +.+ -++
T Consensus 227 s~~~sl~~~dipv~~ds~~~e----d~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~--~s~------g~~ 294 (541)
T KOG4547|consen 227 SLSCSLTVPDIPVTSDSGLLE----DGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD--SSK------GFL 294 (541)
T ss_pred hhheeeccCCCCeEecccccc----ccccceEEeeeccCceeeeccccHHHHhcCccccccceeee--ccc------chh
Confidence 556777777766655544332 11222444444444444444444444444444433322211 111 244
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe-ecCCcceeeccccceecccceeeeeceeeeccCCcccc
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN-CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDA 394 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~-~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 394 (579)
++.+... ..+.++.||....+.++.+......-..+. ....|... + ++....+...+..
T Consensus 295 a~~~~~~----~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~-~--------~~~~~k~~~rqv~------- 354 (541)
T KOG4547|consen 295 AALFGID----KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK-L--------KLVTSKEGKRQVV------- 354 (541)
T ss_pred hhhcccc----hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc-c--------ceeeeecccceee-------
Confidence 4444321 135667788777777666654332222211 11111111 1 1111110000000
Q ss_pred ccCCccccchhhhhhccccCCCCccccccccccchhhhhhhh--ccCcccccccCCcCCCHHHHHHhcCCCCCCC---CC
Q 008058 395 VLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFME--IKDDKVEVEADSQTVCMEDRLRSLGILSNKD---DL 469 (579)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~ 469 (579)
..+.++... +..+...+ .++....+...+.|..++.|+.++....... ..
T Consensus 355 ---------~n~~~k~~~----------------~~~~q~~~p~~~~l~v~~~~g~iEv~~earl~~l~i~~~~~~~k~~ 409 (541)
T KOG4547|consen 355 ---------LNSVAKLGE----------------AEVIQEEPPLTEDLPVLTKGGDIEVSTEARLSALDINLTSNADKSD 409 (541)
T ss_pred ---------cchhhhhcc----------------hhhhcccCcchhcchhhhcCCcceeeehhhhhhcccccccccchhh
Confidence 000000000 00000000 0001111233456778889998887654332 22
Q ss_pred CCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcc
Q 008058 470 LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540 (579)
Q Consensus 470 ~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~ 540 (579)
.........+.|+| .++..++++.|+.|+.|+|++++.+||+.++++|+++++++..+++|++++|..|.+
T Consensus 410 ~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~ 489 (541)
T KOG4547|consen 410 ESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNS 489 (541)
T ss_pred hhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcccc
Confidence 33445566888888 377888999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCChhHHHHHHHHHHHHhh
Q 008058 541 HLLSQESLTPMLSSLYKVRKKKL 563 (579)
Q Consensus 541 ~l~s~~~l~~~l~~l~~~~~~r~ 563 (579)
||+++|+ .++.|++.+++++
T Consensus 490 yl~sv~~---~~~~l~~~~~~~~ 509 (541)
T KOG4547|consen 490 YLSSVPD---QLETLSGKMQKDL 509 (541)
T ss_pred eeecCcc---hhhHHHHHHHHHH
Confidence 9999999 6666777776665
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=277.93 Aligned_cols=237 Identities=17% Similarity=0.215 Sum_probs=212.9
Q ss_pred CCcccceEEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.| .++.|+|. +.-+|+|+.||++++|++.+...+..+.+|...+..+.|+|+
T Consensus 217 ~~~v--~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs---------------------- 272 (459)
T KOG0272|consen 217 TSRV--GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS---------------------- 272 (459)
T ss_pred ccce--eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC----------------------
Confidence 3556 45599997 569999999999999999988999999888877777777766
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
|.+|++++-|.+=++||+.++.... ...||..+|.+++|+|||..+++|+.|..-++||+++|+++..+.+|..
T Consensus 273 -----G~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 273 -----GKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred -----CceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 9999999999999999999998763 3479999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+|.+++|+|+|..+|+|+ ++++|||++..+.+.++++|.+-|+.++|+| .|.+|++++ .|+++++|...+..+
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~--- 422 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSP--- 422 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCccc---
Confidence 999999999999999999 8999999999999999999999999999999 677777777 799999999988764
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
+..+..+...+-++.++ +++.++++++.|.++++|.
T Consensus 423 --~ksLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 423 --LKSLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --chhhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence 45666666666677777 9999999999999999995
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-34 Score=251.49 Aligned_cols=287 Identities=18% Similarity=0.250 Sum_probs=235.3
Q ss_pred CCcccceEEEEccC-CCEEEEEeCCCcEEEEECC-----CCeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 3 ~~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+.-|..+ +..+. .+.+.+++.|.++.+|++. .|..+..+++|...+.....+++
T Consensus 15 ~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d------------------ 74 (315)
T KOG0279|consen 15 TDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD------------------ 74 (315)
T ss_pred CceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC------------------
Confidence 4456444 66665 4689999999999999864 46678889998888887777776
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
+++.++++.|+.+++||+.+++...++ .+|...|.+++|+||++.+++|+.|.+|++||.. |.+..++.
T Consensus 75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 75 ---------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred ---------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 899999999999999999999887666 6899999999999999999999999999999975 56666665
Q ss_pred cC--CCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 157 AS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 157 ~~--~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
.+ .+.|+|+.|+|+ ..++++++ ++|++||+++.+....+.||.+.++.+.++|||...++++ .||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEcc
Confidence 54 579999999998 78899888 8999999999999999999999999999999999999987 89999999999
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
.++ +.+.+++.. .+..++|+ |+..+|+.+... .|+|||+++...+..+++.-.. +..+
T Consensus 223 ~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g--------~s~~-- 280 (315)
T KOG0279|consen 223 EGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIG--------PSSK-- 280 (315)
T ss_pred CCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccCC-ceEEEeccchhhhhhccccccc--------cccc--
Confidence 987 346665554 56677787 887777776654 5999999998877655422110 0000
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
...-...+++||+||..| ++|-.|+.|++|.+.
T Consensus 281 ------------------------------------~~~~~clslaws~dG~tL-f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 281 ------------------------------------AGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVA 313 (315)
T ss_pred ------------------------------------cCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEee
Confidence 111246889999999999 999999999999874
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-33 Score=266.38 Aligned_cols=357 Identities=16% Similarity=0.166 Sum_probs=259.4
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEecccccccccccccccccc----ccc-cCccceEEeeec
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----EHL-SVDYTCMKWLSV 76 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~w~~~ 76 (579)
.++ ....|||.|.|+|+|...|+|||||..... +..+|+...+++..+.|..+-.+ |.- ..-.....|.+.
T Consensus 60 ~~v--tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 60 HQV--TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred cee--EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 455 344899999999999999999999986533 45678888888888888866211 000 112233444432
Q ss_pred cc------cc-------ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058 77 DR------KK-------KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 77 ~~------~~-------~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i 143 (579)
+. +. -|+..+-.+++|+.|+.|.+|+-..-+..... ..|..-|+|+.|+|||.+|++++.||++.+
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEE
Confidence 21 00 11112567999999999999987666665444 679999999999999999999999999999
Q ss_pred EeCCCCceeeEee---cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-------------------------
Q 008058 144 IDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------- 193 (579)
Q Consensus 144 wd~~~~~~~~~~~---~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~------------------------- 193 (579)
||=.+|+.+..+. +|++.|.+++|+||++.+++++ .+++|||+.+.++++
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 9999999999988 8999999999999999999998 799999997654332
Q ss_pred ------------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc-----------------e
Q 008058 194 ------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA-----------------S 238 (579)
Q Consensus 194 ------------------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~-----------------~ 238 (579)
.+.||...|+++..+|++++|++++ .||.|.-|+...+..... .
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 4568999999999999999999997 799999999876542100 0
Q ss_pred eEE------------------------eeecCc-----------------------------------eeeEeEEecCCc
Q 008058 239 CVL------------------------AMEHPA-----------------------------------VFMDCRCIDNGG 259 (579)
Q Consensus 239 ~~~------------------------~~~~~~-----------------------------------~~~~~~~~~~~~ 259 (579)
.++ .+.+.. ....++++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv---- 451 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV---- 451 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE----
Confidence 000 000000 01112233
Q ss_pred ccCCCcEEEEEEcCCeEEEEECCCceeec--ccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCC
Q 008058 260 VDDAGLYVLAISETGVCYIWYGQNIEELR--NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL 337 (579)
Q Consensus 260 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~ 337 (579)
+|++..+++|++||+|+||.+..++... ....++-.+.... ++|+++ +++++...+.+-++ .-..
T Consensus 452 -~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~----yla~~Da~rkvv~y-------d~~s 518 (603)
T KOG0318|consen 452 -SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGA----YLAAGDASRKVVLY-------DVAS 518 (603)
T ss_pred -cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCc----EEEEeccCCcEEEE-------Eccc
Confidence 4999999999999999999987765322 1222232333322 788888 88888775533332 2222
Q ss_pred CCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058 338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
-+........|+..|.+++|||+..++ +|||-|..+.+|++.+.
T Consensus 519 ~~~~~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 519 REVKTNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CceecceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccCh
Confidence 222334556799999999999999999 99999999999999754
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-35 Score=266.09 Aligned_cols=279 Identities=15% Similarity=0.253 Sum_probs=246.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+| ..+-|+|+-..+++++.|++|++||..+|++...+++|...+.++.|...
T Consensus 109 ~~v--t~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~------------------------- 161 (406)
T KOG0295|consen 109 SSV--TRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS------------------------- 161 (406)
T ss_pred cce--eeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-------------------------
Confidence 567 44489999999999999999999999999999999988888777777655
Q ss_pred cCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.++++++.|-.+++||..+. +++ +...+|.-.|.+++|-|.|.++++++.|.+|++|++.+|-++++|.+|...|
T Consensus 162 --Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 162 --GKYLATCSSDLSAKLWDFDTFFRCI-KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred --ccEEEecCCccchhheeHHHHHHHH-HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence 889999999999999999874 344 3446899999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC---------------CCEEEEEecCCCeEE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYIA 225 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---------------~~~l~s~s~~d~~i~ 225 (579)
..++.+.||.++++++ .++++|-+.++++...+.+|..+|-+++|.|. ++++.+++ .|++|+
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk 317 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIK 317 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEE
Confidence 9999999999999999 79999999999999999999999999999773 24777776 899999
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
+||+.++. |++++..+...+..+.|+ |.|+||+++.+|+++++||+++++.+....
T Consensus 318 ~wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-------------- 373 (406)
T KOG0295|consen 318 IWDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMKTLE-------------- 373 (406)
T ss_pred EEeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeeeccC--------------
Confidence 99999986 779999999999999998 999999999999999999998887655432
Q ss_pred cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.|+..|.++.|..+..++ +|||-|.+.++|+.
T Consensus 374 -----------------------------------------ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 -----------------------------------------AHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 405 (406)
T ss_pred -----------------------------------------CCcceeEEEecCCCCceE-Eeccccceeeeeec
Confidence 455577788888777788 99999999999964
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=274.83 Aligned_cols=325 Identities=16% Similarity=0.180 Sum_probs=266.9
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.| .++.||.|.++|++|+.|-+++||.++..+- ...+.+|...+....|..+
T Consensus 147 di--~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~------------------------ 200 (893)
T KOG0291|consen 147 DI--TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN------------------------ 200 (893)
T ss_pred ce--eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC------------------------
Confidence 46 6779999999999999999999999876554 5556677766666666554
Q ss_pred ccCCcEEEEEECCCeEEEEEccC-----------------------CeE-----E-----EEecCCCCCCEEEEEEccCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSA-----------------------GQL-----K-----WRLSDCHPGGVSAISFATHG 129 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~-----------------------~~~-----~-----~~~~~~h~~~V~~l~~~~~~ 129 (579)
..-+++.+.||.+.+|.... ++. . ..++......|++.+|++.-
T Consensus 201 ---~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t 277 (893)
T KOG0291|consen 201 ---SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT 277 (893)
T ss_pred ---cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence 55689999999999998761 111 1 11223334789999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEE
Q 008058 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMT 206 (579)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~ 206 (579)
+.|++|-..|...+|.+....+++.+.-...+|..++|+..|.+++.|+ |++.||+.++..-+.+.++|...+++++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 9999999999999999999999999988888999999999999999998 7999999999988999999999999999
Q ss_pred EecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 207 ~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
++|||+++++++ +||.|+|||...+. |..++..|...++.+.|. ..|+.+++.+.||+|+.||+...+.
T Consensus 358 YSpDgq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 358 YSPDGQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ECCCCcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeecccce
Confidence 999999999998 79999999999886 668888888888999998 8999999999999999999998888
Q ss_pred ecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeec
Q 008058 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (579)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (579)
.+++..+.....+.....+.+. .+.+|+.|. ++..+|.. .....++.+.||+++|.+++|+|+|..| +
T Consensus 427 fRTft~P~p~QfscvavD~sGe----lV~AG~~d~----F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~L-a 494 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGE----LVCAGAQDS----FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLL-A 494 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCC----EEEeeccce----EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeE-E
Confidence 8776654433222211233344 677777653 34444443 3556777899999999999999999999 9
Q ss_pred cccceecccceeeee
Q 008058 367 SQSLLKSKRGRYVQN 381 (579)
Q Consensus 367 s~s~d~~~~~w~~~~ 381 (579)
|+|.|+++|+|++-.
T Consensus 495 S~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFS 509 (893)
T ss_pred eccccceEEEEEeec
Confidence 999999999999853
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=259.14 Aligned_cols=285 Identities=14% Similarity=0.210 Sum_probs=242.5
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+=||++ ++.|-.++|++|+.|++|+|||+.+|++..++.+|...+..+.++..
T Consensus 152 gWVr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r------------------------- 204 (460)
T KOG0285|consen 152 GWVRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR------------------------- 204 (460)
T ss_pred ceEEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-------------------------
Confidence 346555 99999999999999999999999999999999988888877777755
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
..++++++.|+.|+.||+..++.+..+ .||-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|.
T Consensus 205 --HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 205 --HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred --CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence 678999999999999999999999776 68999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
++.+.|-...+++|+ ++|++||++.|+...++..|...|.+++.+|....|++++ .| .|+-|++..+... .
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~ 354 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----Q 354 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----h
Confidence 999999889999999 8999999999999999999999999999999988888876 45 5999999988744 2
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
.+..+..++..+... +..++++|++.|.+.+||.+++-..+..+. .+.-|+.+
T Consensus 355 nlsgh~~iintl~~n------sD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------~vqpGSl~- 407 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVN------SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------IVQPGSLE- 407 (460)
T ss_pred ccccccceeeeeeec------cCceEEEcCCceEEEEEecCcCcccccccc--------------------cccCCccc-
Confidence 355666677777664 557789999999999999988865443221 11122221
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+..|.+.+|...|.-| +||..|++|++|.-
T Consensus 408 --------------------------sEagI~as~fDktg~rl-it~eadKtIk~~ke 438 (460)
T KOG0285|consen 408 --------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKE 438 (460)
T ss_pred --------------------------cccceeEEeecccCceE-EeccCCcceEEEec
Confidence 12247778888889889 99999999999975
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=271.45 Aligned_cols=281 Identities=14% Similarity=0.178 Sum_probs=232.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|..+ .|.|+|+.|++|+..|.+.+|+..+......++.|.. .++++.|.+.
T Consensus 97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs------------------~Vr~m~ws~~------- 149 (464)
T KOG0284|consen 97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS------------------PVRTMKWSHN------- 149 (464)
T ss_pred cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcc------------------cceeEEEccC-------
Confidence 467445 9999999999999999999999744333333334443 4556666654
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+.++++|+.+|.|++|+...+... .+...|...|++++|+|+...|++|+.||+|+|||....+....+.+|...|.
T Consensus 150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 889999999999999999877654 33344568999999999999999999999999999999998889999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++|+|...++++|+ +.|++||.+++.++.++.+|+..|..+.|+|++++|+++| .|..++++|+++.+.. +
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl-----~ 300 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKEL-----F 300 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHH-----H
Confidence 999999999999999 8999999999999999999999999999999999999998 7999999999965533 4
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
....+...+..+.|.+ -....+.+|+.||.|..|.+...+.+..+
T Consensus 301 ~~r~Hkkdv~~~~WhP----~~~~lftsgg~Dgsvvh~~v~~~~p~~~i------------------------------- 345 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHP----LNESLFTSGGSDGSVVHWVVGLEEPLGEI------------------------------- 345 (464)
T ss_pred Hhhcchhhheeecccc----ccccceeeccCCCceEEEeccccccccCC-------------------------------
Confidence 5555555566666653 25678899999999999987632222111
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
-.+|...|++++|.|=|..| ++||.|+++++|..
T Consensus 346 -----------------------~~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 346 -----------------------PPAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR 379 (464)
T ss_pred -----------------------CcccccceeeeeccccceeE-eecCCCcceeeecc
Confidence 01588899999999999999 99999999999975
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-33 Score=244.68 Aligned_cols=243 Identities=16% Similarity=0.196 Sum_probs=202.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.-|.++ +.++||++.++++.|+++++||+.+|+..+.|.+|...+.++.|+++
T Consensus 63 sH~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------------------------ 116 (315)
T KOG0279|consen 63 SHFVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------------------------ 116 (315)
T ss_pred ceEecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------------------------
Confidence 3456555 89999999999999999999999999999999999888888888777
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
++.+++|+.|.+|++||+..+.........|.+-|+|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+
T Consensus 117 ---n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~ 193 (315)
T KOG0279|consen 117 ---NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG 193 (315)
T ss_pred ---CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence 7889999999999999998776654443445889999999997 77899999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
.++.++++|||.++++|+ |.+.+||++.++.+..+. |...|.+++|+|+...|+.+ .+..|+|||+.+.......
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEEL 270 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhc
Confidence 999999999999999999 899999999999988775 88999999999997666655 4677999999987643100
Q ss_pred eEE----eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 239 CVL----AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 239 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
... ...........++|+ ++|..|++|-.|+.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~clslaws-----~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWS-----ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEEEEEc-----CCCcEEEeeecCCcEEEEEee
Confidence 000 011112333344555 899999999999999999763
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.3e-34 Score=282.01 Aligned_cols=238 Identities=14% Similarity=0.216 Sum_probs=207.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-------------------------------EEEecccccccccccccc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-------------------------------QTEFADIASTETTSLYGN 57 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 57 (579)
.|+.||+|+..||.|-.|..|++|.+...+. ..++.+|.+++....|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 6779999999999999999999999874221 112334444444444444
Q ss_pred ccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC
Q 008058 58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (579)
Q Consensus 58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 137 (579)
+ .++|++|+.|++|++|.+.+..++..+ .||..||+++.|+|-|-+|+|++.
T Consensus 462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred c---------------------------ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence 4 789999999999999999999998666 599999999999999999999999
Q ss_pred CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 215 (579)
|++.++|......+.+.|.+|-..|.|+.|+|++.++++|+ .++++||+.+|..++.|.||.++|++++|+|+|++|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
+++ .|+.|.+||+.++... ..+..+...+..+.|+ .+|..||+|+.|.+|++||+....
T Consensus 594 Sg~-ed~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 594 SGD-EDGLIKIWDLANGSLV-----KQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecc-cCCcEEEEEcCCCcch-----hhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence 998 7999999999998744 3344447778888888 999999999999999999976543
No 19
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=274.35 Aligned_cols=344 Identities=16% Similarity=0.203 Sum_probs=280.9
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+| .|++-+||.-+||.|..||.|+||+..++.....+.+|...++.+.|...
T Consensus 67 ev--t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~-------------------------- 118 (888)
T KOG0306|consen 67 EV--TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI-------------------------- 118 (888)
T ss_pred eE--EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence 55 44477788889999999999999999988888888888877776666655
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--------
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-------- 156 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------- 156 (579)
|..|++|+.|+.|.+||+-......++ .||...|+..-|..+.+++++++.|+.|++||+.+..++.+.-
T Consensus 119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~ 196 (888)
T KOG0306|consen 119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA 196 (888)
T ss_pred -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence 899999999999999999887777677 6899999999999888899999999999999998765443321
Q ss_pred --------------------------------------------------------------------------------
Q 008058 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008058 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~ 356 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK 356 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence
Q ss_pred --------------cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe--------------------------
Q 008058 157 --------------ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-------------------------- 195 (579)
Q Consensus 157 --------------~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~-------------------------- 195 (579)
+|...|.+++++.+...+++|+ +.+++|+..+.++++++
T Consensus 357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCce
Confidence 4666788889998888888887 89999999877766532
Q ss_pred --------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc--ccceeE------EeeecCceeeEeE
Q 008058 196 --------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK--QSASCV------LAMEHPAVFMDCR 253 (579)
Q Consensus 196 --------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~--~~~~~~------~~~~~~~~~~~~~ 253 (579)
+.|.+.|.+++.+||++.++++| .|.+|++||+.-... .....+ .+++-++ .+.++
T Consensus 437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d-dvL~v 514 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED-DVLCV 514 (888)
T ss_pred EEEEeehhhhhhhhhccccceeeeeecCCCCceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccc-cEEEE
Confidence 35889999999999999999998 799999999743211 001111 2222333 34567
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEE
Q 008058 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVA 333 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 333 (579)
.++ |||++|+++=.|++++||-+++.+..-+..+++.++.|.+ .+++++ .|++|+.|..++.
T Consensus 515 ~~S-----pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD-IS~DSk----livTgSADKnVKi-------- 576 (888)
T KOG0306|consen 515 SVS-----PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD-ISPDSK----LIVTGSADKNVKI-------- 576 (888)
T ss_pred EEc-----CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe-ccCCcC----eEEeccCCCceEE--------
Confidence 777 9999999999999999999999999999999999999988 688888 9999999987776
Q ss_pred eCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccCCc
Q 008058 334 YGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLP 399 (579)
Q Consensus 334 ~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~ 399 (579)
+|.....|...+-+|...|.++.|-|+..+. +|+|.|+.+|.|+..+- +..++....+-..++..
T Consensus 577 WGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F-Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 577 WGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF-FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred eccccchhhhhhhcccCceeEEEEcccceeE-EEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 7778888888999999999999999988888 99999999999987533 67777666655555433
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.4e-33 Score=245.17 Aligned_cols=283 Identities=14% Similarity=0.189 Sum_probs=231.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+.| ..+.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.+..+.|..+
T Consensus 47 ~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----------------------- 101 (338)
T KOG0265|consen 47 KGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----------------------- 101 (338)
T ss_pred cceE--EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence 4667 666999999999999999999999964 23345667788877777666666
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
++.+++++.|.+|+.||+++|+++.+. ++|..-|+.+.-+.-|.. +.+++.||++++||+++...++++. .+.
T Consensus 102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence 889999999999999999999999777 689999999986555554 6678899999999999999888876 356
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
+++++.|..++..+.+|+ +.|++||++.+....++.||..+|+.+..+|+|.++.+-+ .|.++++||++.-... ..
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence 899999999999999999 8999999999999999999999999999999999999988 6999999999875433 22
Q ss_pred eEEeeec--Cce--eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058 239 CVLAMEH--PAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 239 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
++..+.. +.. .+-.+.|+ |++.++.+|+.|..+++||......+.
T Consensus 254 ~v~if~g~~hnfeknlL~csws-----p~~~~i~ags~dr~vyvwd~~~r~~ly-------------------------- 302 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWS-----PNGTKITAGSADRFVYVWDTTSRRILY-------------------------- 302 (338)
T ss_pred eEEEeecchhhhhhhcceeecc-----CCCCccccccccceEEEeecccccEEE--------------------------
Confidence 3333222 111 12223444 999999999999999999864432221
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++.||.+.|.++.|.|...+| .+++.|+++++-++
T Consensus 303 -----------------------------klpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei 337 (338)
T KOG0265|consen 303 -----------------------------KLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI 337 (338)
T ss_pred -----------------------------EcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence 455888899999999999999 99999999887654
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=279.23 Aligned_cols=280 Identities=23% Similarity=0.335 Sum_probs=229.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..| .++.|+|+|+++++++.|+.+++|+..++. ....+.+|...+..+.|+++
T Consensus 160 ~sv--~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----------------------- 214 (456)
T KOG0266|consen 160 PSV--TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----------------------- 214 (456)
T ss_pred Cce--EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-----------------------
Confidence 456 566999999999999999999999997777 66666666666666666655
Q ss_pred cccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++++.|++|++||+.. +..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|.+
T Consensus 215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD 289 (456)
T ss_pred ----CcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence 78999999999999999944 4666555 69999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
.|++++|+++|++|++++ +.|++||+.++. ++..+.++..+ ++++.|+|++.++++++ .|+.+++||+..+..
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKS 368 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcc
Confidence 999999999999999998 999999999998 56778777666 99999999999999997 799999999998764
Q ss_pred ccceeEEeeecCce--eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058 235 QSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
.. .+ ..|... .+....+ .+++.++++|+.|+.|++||..++..+..
T Consensus 369 ~~---~~-~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~~----------------------- 416 (456)
T KOG0266|consen 369 VG---TY-TGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQR----------------------- 416 (456)
T ss_pred ee---ee-cccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhhh-----------------------
Confidence 41 11 122222 2222222 37999999999999999999877654432
Q ss_pred hhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecccc--ceecccceee
Q 008058 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (579)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (579)
+.+| ...+..++++|...++ ++++ .|+.+++|..
T Consensus 417 --------------------------------l~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 417 --------------------------------LEGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY 453 (456)
T ss_pred --------------------------------hcCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence 2345 5567788888888888 7776 6888888864
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-32 Score=254.75 Aligned_cols=339 Identities=17% Similarity=0.212 Sum_probs=258.0
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.++| ++++|+|-.. .+++|+.|-+.++|++....-..+. ..+....+............+|+++|...
T Consensus 178 ~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~----- 246 (524)
T KOG0273|consen 178 ESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----QLVLRHCIREGGKSVPSNKDVTSLDWNND----- 246 (524)
T ss_pred CCce--EEEecCchhhhhhhccCCccceeeeeehhhccccch----hhhhhhhhhhhcccCCccCCcceEEecCC-----
Confidence 5778 8999999766 8999999999999998641110000 00000001000012233578999999876
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+++|++|+.+|.+++|+...+.. ..+ ..|.++|.++.|+..|.||++++.|+++.+||..+|...+.|.-|..+
T Consensus 247 ----G~~LatG~~~G~~riw~~~G~l~-~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 247 ----GTLLATGSEDGEARIWNKDGNLI-STL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred ----CCeEEEeecCcEEEEEecCchhh-hhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 89999999999999999765443 233 679999999999999999999999999999999999999999988888
Q ss_pred eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
-..+.|-.+..+..++. +.|+|+.+...+++.++.+|.++|.++.|.|.|..|++++ +|+++++|+...... .
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~-----~ 394 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNS-----V 394 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcc-----h
Confidence 77889986554444444 9999999999999999999999999999999999999997 799999999776542 2
Q ss_pred EeeecCceeeEeEEecCCc-c--c-CCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058 241 LAMEHPAVFMDCRCIDNGG-V--D-DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~-~--~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
..+..+...+....|++.. . . .++..+++++.|++|++||+..+.++..+..+...+.+.+ |+|+++ ++++
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~----ylAs 469 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR----YLAS 469 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc----EEEe
Confidence 3444444444455555321 1 1 2467899999999999999999999988877777766666 899988 9999
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|++++.+.++. ......++...+.. .|..++|+.+|.+|.++.| |+.+.+-++
T Consensus 470 Gs~dg~V~iws--------~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~s-d~~vcvldl 522 (524)
T KOG0273|consen 470 GSLDGCVHIWS--------TKTGKLVKSYQGTG-GIFELCWNAAGDKLGACAS-DGSVCVLDL 522 (524)
T ss_pred cCCCCeeEecc--------ccchheeEeecCCC-eEEEEEEcCCCCEEEEEec-CCCceEEEe
Confidence 99998776644 33344444544443 5899999999999945554 888877654
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=239.50 Aligned_cols=232 Identities=18% Similarity=0.306 Sum_probs=203.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCC------eEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.|+|+|.|+++|+|+-|+...||++.+. +...++.+|.+.+. |+.+..
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS------------------cC~f~d------- 155 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS------------------CCRFLD------- 155 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE------------------EEEEcC-------
Confidence 78999999999999999999999999754 23445555554333 344433
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
...|++++.|.+.-+||+++++.+..+ .+|.+.|.++.++| +++.+++|+.|+..++||++.+.++++|.+|...
T Consensus 156 ---D~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 156 ---DNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred ---CCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence 456999999999999999999998766 69999999999999 9999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
|++++|.|+|.-+++|+ ++.++||++..+.+..+.. -..+|++++|+..|++|+++. .|.++.+||.-.++.
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~--- 307 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGER--- 307 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccce---
Confidence 99999999999999999 8999999999998888862 236799999999999999886 799999999887763
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
+-.+..|...++++..+ |||.-+++|+.|.+++||.
T Consensus 308 --vg~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 --VGVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --EEEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence 34566888888999998 9999999999999999994
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=232.42 Aligned_cols=252 Identities=17% Similarity=0.265 Sum_probs=210.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+-|+.+ ..+||+.+||+++. ..||+||+.++. .+.+|.+|...+..+.|..+
T Consensus 40 dsqVNrL--eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---------------------- 94 (311)
T KOG0315|consen 40 DSQVNRL--EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---------------------- 94 (311)
T ss_pred ccceeeE--EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence 4667777 89999999999985 579999998775 58889988887777777766
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec-CC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~ 159 (579)
++..++|+.||+++|||++...+...+ .|.++|+++..+|+...|++|..+|.|++||+.+..+...+-. ..
T Consensus 95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 899999999999999999996665444 4889999999999999999999999999999998866665443 34
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCC------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
..|.++...|||++++.+. |..++|++-+. +++.+|+.|.+.+..+.+|||+++|++++ .|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCC
Confidence 5899999999999999998 99999998764 45677899999999999999999999998 599999999988
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (579)
.-+ ....+..+...+--+.|+ .||.||++++.|+.+++|++..++.++...++...
T Consensus 247 ~~k----le~~l~gh~rWvWdc~FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 247 FFK----LELVLTGHQRWVWDCAFS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred cee----eEEEeecCCceEEeeeec-----cCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 721 223444554555555666 79999999999999999999999988877665443
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=233.49 Aligned_cols=247 Identities=14% Similarity=0.124 Sum_probs=190.2
Q ss_pred ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008058 112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (579)
Q Consensus 112 ~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~ 187 (579)
+..+|...|++++|+|.|++|++++-|.++.||.-.. .+++.++.+|...|.|++|+++|++||+++ .+|.||.+.
T Consensus 56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 4467999999999999999999999999999998653 378889999999999999999999999999 799999987
Q ss_pred CC---eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC
Q 008058 188 DH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 188 ~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.+ .++..+++|...|..+.|+|....|++++ .|++|++|+-..+. ...++.++..+...+-+..|. +.|
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G 207 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIG 207 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCC
Confidence 54 56788999999999999999998999988 79999999887432 345788888887778888887 899
Q ss_pred cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE
Q 008058 265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK 344 (579)
Q Consensus 265 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (579)
..|+++++|++++||...+.-... +......+. +. ...|+++..|+.++++... ....+.........
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~~~-~sr~~Y~v~----W~------~~~IaS~ggD~~i~lf~~s-~~~d~p~~~l~~~~ 275 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLSGM-HSRALYDVP----WD------NGVIASGGGDDAIRLFKES-DSPDEPSWNLLAKK 275 (312)
T ss_pred ceEEEecCCcceEeeeeccCcchh-cccceEeee----ec------ccceEeccCCCEEEEEEec-CCCCCchHHHHHhh
Confidence 999999999999999754221111 111111111 11 1278888887766654322 00011111222223
Q ss_pred EecCCCCcEEEeecCC-cceeeccccceecccceee
Q 008058 345 ILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 345 ~~~h~~~v~~~~~s~d-g~~l~~s~s~d~~~~~w~~ 379 (579)
-..|...|.++.|.|. ...| +|||.||.+++|++
T Consensus 276 ~~aHe~dVNsV~w~p~~~~~L-~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKVSNRL-ASGGDDGIVNFWEL 310 (312)
T ss_pred hcccccccceEEEcCCCCCce-eecCCCceEEEEEe
Confidence 4469999999999996 4566 99999999999987
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-32 Score=272.58 Aligned_cols=201 Identities=19% Similarity=0.329 Sum_probs=190.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++|| ..+.|+|+.++|++||.|+++|+|.+.+..++..+++|..++..+.|+|-
T Consensus 450 H~GPV--yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~----------------------- 504 (707)
T KOG0263|consen 450 HSGPV--YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR----------------------- 504 (707)
T ss_pred CCCce--eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------------------
Confidence 57899 77799999999999999999999999999999999999999998888876
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
|-++++++.|++-++|........ +++.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.|.+|.++
T Consensus 505 ----GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 505 ----GYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred ----ceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 889999999999999999987776 455789999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
|.+++|+|+|++|++|+ |.|.+||+.+++.+..+.+|++.|.++.|+.+|..|+++| .|++|++||+....
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI 652 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence 99999999999999999 9999999999999999999999999999999999999998 79999999987654
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=250.82 Aligned_cols=284 Identities=16% Similarity=0.184 Sum_probs=223.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+..| +.+.||++|+|||+++.|.+..||++.... ...++.+|..++.-+.|+|+
T Consensus 224 tdEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--------------------- 280 (519)
T KOG0293|consen 224 TDEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--------------------- 280 (519)
T ss_pred CCcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC---------------------
Confidence 3456 778999999999999999999999875433 35566666655554444444
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
.+++++|+.+..+.+||+.+|.+...+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++-.
T Consensus 281 ------dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr 353 (519)
T KOG0293|consen 281 ------DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVR 353 (519)
T ss_pred ------CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccc
Confidence 78899999999999999999999877777777899999999999999999999999999984 66666676544
Q ss_pred -CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 160 -KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 160 -~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
..|.+++.++||+++++.+ ..|++|+..+......+. ...+|+++..+.+++++++.- .+..+.+||+...+...
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVR 431 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHH
Confidence 3699999999999988877 899999987765444333 457899999999999988875 79999999999665331
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
. +.-......+--.||.. .+..++++|++|+.|+||+..+++.+.
T Consensus 432 --k-Y~Ghkq~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgkll~---------------------------- 476 (519)
T KOG0293|consen 432 --K-YFGHKQGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGKLLA---------------------------- 476 (519)
T ss_pred --H-hhcccccceEEEeccCC----CCcceEEecCCCceEEEEEccCCceeE----------------------------
Confidence 0 11111222333344431 466899999999999999977665532
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.||...|.+++|+|......||+|.|++||+|..+
T Consensus 477 ---------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 477 ---------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ---------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 4558888999999999887666999999999999763
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.8e-31 Score=253.36 Aligned_cols=280 Identities=23% Similarity=0.310 Sum_probs=231.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++|++++.||.|++|+..++.....+..|...+. .+.|.+.
T Consensus 8 h~~~i--~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~----- 62 (289)
T cd00200 8 HTGGV--TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------------------DVAASAD----- 62 (289)
T ss_pred cCCCE--EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee------------------EEEECCC-----
Confidence 45788 5669999999999999999999999998877766665544333 4444443
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+..+++++.+|.|++||+.+++....+ ..|...|.++.|+|+++++++++.||.|++||+.+++....+..|...
T Consensus 63 ----~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 ----GTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred ----CCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 567999999999999999987776555 478889999999999888888888999999999989999899889999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
+.+++|+|++.++++++ +.|++||+++++.+..+..|...+.++.|+|+++.+++++ .|+.+++||++.++..
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~---- 212 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL---- 212 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee----
Confidence 99999999999999886 8999999999999999999999999999999999999887 5999999999876533
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
..+..+...+..+.++ |++.++++++.||.+++||..+++.+.
T Consensus 213 -~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~------------------------------- 255 (289)
T cd00200 213 -GTLRGHENGVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ------------------------------- 255 (289)
T ss_pred -cchhhcCCceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence 3332334456667776 888888888889999999986543221
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+..|...+.+++|+|+|.++ ++++.|+.+++|+
T Consensus 256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~ 289 (289)
T cd00200 256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289 (289)
T ss_pred ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence 112455578999999999999 9999999999995
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.2e-31 Score=288.54 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=229.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.| .+++|+|+|++||+|+.|+.|+||+..+..... .....+.. . ......+.+++|.+..
T Consensus 483 ~~~V--~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~~~--~-------~~~~~~v~~l~~~~~~----- 544 (793)
T PLN00181 483 SNLV--CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYPVV--E-------LASRSKLSGICWNSYI----- 544 (793)
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccceE--E-------ecccCceeeEEeccCC-----
Confidence 4567 556999999999999999999999975421000 00000000 0 0012356678888764
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+..|++++.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..
T Consensus 545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 678999999999999999999887666 68999999999997 7889999999999999999999998888754 57
Q ss_pred eeEEEEc-cCCCEEEEEC--CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-c
Q 008058 162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S 236 (579)
Q Consensus 162 v~~l~~~-p~g~~l~~~~--g~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-~ 236 (579)
+.++.|+ ++|.++++|+ |.|++||+++.+ .+..+.+|...|.++.|. ++.++++++ .|++|++||++..... .
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN 697 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence 8999995 5799999998 899999998865 577888999999999997 677888887 7999999999754211 1
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
...+..+..+...+.++.|+ |++.+|++|+.||.|++|+......+.... +..... +
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~-- 754 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V-- 754 (793)
T ss_pred CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence 12345566666677778887 899999999999999999975543221110 000000 0
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+. ....|...|.+++|+|+|..+ ++|+.|+.|++|++
T Consensus 755 -----------------~~~-------~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~ 792 (793)
T PLN00181 755 -----------------SGL-------EVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM 792 (793)
T ss_pred -----------------ccc-------ccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence 000 112355679999999999999 99999999999986
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-31 Score=255.88 Aligned_cols=247 Identities=15% Similarity=0.242 Sum_probs=218.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..|+++ .|+|...+++++-..|+|.|||.++...+..|....-++....|-..
T Consensus 13 SdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR------------------------ 66 (794)
T KOG0276|consen 13 SDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR------------------------ 66 (794)
T ss_pred CCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec------------------------
Confidence 3456445 99999999999999999999999999999988765555544444322
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
.+++++|+.|..|++|+..+++.+..+ .+|.+-|++++.+|...+++++|.|-+|++||.+.+ .+.++|.+|...
T Consensus 67 ---knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 67 ---KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ---cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 678999999999999999999999777 789999999999999999999999999999998754 788899999999
Q ss_pred eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 162 v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
|.+++|+| |.+.+++++ ++|+||.+.+..+..++.+|...|+++.|-+. ..||++++ +|.+++|||.++..
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~--- 218 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS--- 218 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH---
Confidence 99999999 677899998 99999999999999999999999999999864 46999998 79999999999865
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
|+.+++.|...++.++|. |.=..+++|++||+++||+..+.++....
T Consensus 219 --CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 219 --CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred --HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhhh
Confidence 678899888889999998 88899999999999999998887765544
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.5e-31 Score=237.32 Aligned_cols=324 Identities=14% Similarity=0.112 Sum_probs=259.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.+| .+++.+|+.+++|||+.|..-.||+..+|....++.+|+..+.+..|+.+
T Consensus 63 H~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd----------------------- 117 (399)
T KOG0296|consen 63 HTDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD----------------------- 117 (399)
T ss_pred cCCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-----------------------
Confidence 45678 77799999999999999999999999999999999999998888888877
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+|++|..+|.|+||...++...+.+. .....+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|+.+
T Consensus 118 ----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 118 ----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ----ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence 9999999999999999999999887775 35567888999999999999999999999999998888999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
+++=.|.|+|+.++++. |+|++||..+++++.++.+. .....++.++..+..++.+. .++.+++-+..+++.....
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEec
Confidence 99999999999999998 99999999999999888633 34566788888887777766 6888888877776633100
Q ss_pred ------eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee--cccCCceEEeeecccCccccccc
Q 008058 239 ------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 239 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
......+....+....++ ..=...|+|+.||+|-|||....+.. ..++....... |-+ .+
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~----w~~-t~-- 339 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK----WLN-TD-- 339 (399)
T ss_pred CCCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE----EcC-cc--
Confidence 000112223333334443 34467788899999999998765433 33333322222 233 23
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++++++.+|.++.|| .....+.-++.||...|..++.+||++++ +|+|.|++.++.++
T Consensus 340 --~l~t~c~~g~v~~wD--------aRtG~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 340 --YLLTACANGKVRQWD--------ARTGQLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV 397 (399)
T ss_pred --hheeeccCceEEeee--------ccccceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence 899999999888866 33445556889999999999999999999 99999999999876
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-31 Score=224.67 Aligned_cols=249 Identities=17% Similarity=0.318 Sum_probs=209.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++|+++ .|+-||+|.++|+.|.+|++|+...|.+++++.+|...+.....+.+
T Consensus 16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------------- 70 (307)
T KOG0316|consen 16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------------- 70 (307)
T ss_pred cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence 56899555 99999999999999999999999999999999999988877666655
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~ 159 (579)
+..+++|+.|..|.+||+.+|+...++ .+|.+.|+.+.|+.+...+++|+-|.++++||.++. ++++.+....
T Consensus 71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 677999999999999999999999777 789999999999999999999999999999999865 6888888888
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+.|.++..+ +..+++|+ |+++.||++.|+.....-+ .||+++.|+++++..++++ -|+++++.|-.+++...
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~- 219 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLK- 219 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccceeeecccchhHHHH-
Confidence 899999886 56788887 9999999999987766654 5799999999999999887 69999999999988552
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
...-.......+.|. +. ....++++|++||.+++||+....++......
T Consensus 220 -sYkGhkn~eykldc~-l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 220 -SYKGHKNMEYKLDCC-LN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred -Hhcccccceeeeeee-ec-----ccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 111112233334433 33 56789999999999999999988877655443
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.7e-33 Score=248.16 Aligned_cols=277 Identities=16% Similarity=0.228 Sum_probs=226.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..| .|+.| |...+++|..|++|+|||..+-.+...+.+|.+.+.++.|.
T Consensus 197 skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd-------------------------- 246 (499)
T KOG0281|consen 197 SKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD-------------------------- 246 (499)
T ss_pred CCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--------------------------
Confidence 4556 55566 55679999999999999999999999898888777655553
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST 159 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~ 159 (579)
...+++|+.|.+|++||.++|+++..+. +|...|..+.|+ +.++++++.|.++.+||+.... +.+.+.+|.
T Consensus 247 ---~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred ---ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence 5689999999999999999999997774 799999999995 5599999999999999998654 344578899
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
..|+.+.|+ .+++++++ .+|++|++.+++.++++.+|...|.++.+ .++++++|+ .|.+|++||+..+..
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS-SDntIRlwdi~~G~c--- 392 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIECGAC--- 392 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC-CCceEEEEeccccHH---
Confidence 999999996 56999888 79999999999999999999999988887 477888877 699999999999974
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (579)
...++.+...+.++-| |.+.|++|..||+|++||+..+..-+... + .
T Consensus 393 --LRvLeGHEeLvRciRF-------d~krIVSGaYDGkikvWdl~aaldpra~~---------------~-----~---- 439 (499)
T KOG0281|consen 393 --LRVLEGHEELVRCIRF-------DNKRIVSGAYDGKIKVWDLQAALDPRAPA---------------S-----T---- 439 (499)
T ss_pred --HHHHhchHHhhhheee-------cCceeeeccccceEEEEecccccCCcccc---------------c-----c----
Confidence 4567788889999988 46889999999999999987765322110 0 0
Q ss_pred cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
-+..++..|++.|..+.| |...+ +++++|.+|.+|+.-|
T Consensus 440 ----------------------~Cl~~lv~hsgRVFrLQF--D~fqI-vsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 440 ----------------------LCLRTLVEHSGRVFRLQF--DEFQI-ISSSHDDTILIWDFLN 478 (499)
T ss_pred ----------------------hHHHhhhhccceeEEEee--cceEE-EeccCCCeEEEEEcCC
Confidence 111234457777888766 55667 9999999999999854
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-31 Score=239.16 Aligned_cols=284 Identities=20% Similarity=0.289 Sum_probs=225.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-|..|||||+||++|+.||-|.|||..+|+....++-..... | -..+..+.|+.|... ...
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~----f------MMmd~aVlci~FSRD---------sEM 277 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN----F------MMMDDAVLCISFSRD---------SEM 277 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc----e------eecccceEEEeeccc---------HHH
Confidence 355999999999999999999999999998765443100000 0 001223444444332 678
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++|+.||.|++|.+.+|.++.++..+|+.+|+|+.|+.|+..+++++.|.++++.-+.+|++++.|++|...|+...|+
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
+||..+++++ |+|++|+.++.+++.+|+ +...+|.++..-|.+ ..++.|. ..+++++.++...-.. .+..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVr----sfsS 432 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVR----SFSS 432 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEe----eecc
Confidence 9999999998 999999999999999886 445678888777754 4677775 6889999998765322 1111
Q ss_pred --ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 244 --EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 244 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
...+..+. ++.+ |.|.++.+.++|+.++.|...+|..-+
T Consensus 433 GkREgGdFi~-~~lS-----pkGewiYcigED~vlYCF~~~sG~LE~--------------------------------- 473 (508)
T KOG0275|consen 433 GKREGGDFIN-AILS-----PKGEWIYCIGEDGVLYCFSVLSGKLER--------------------------------- 473 (508)
T ss_pred CCccCCceEE-EEec-----CCCcEEEEEccCcEEEEEEeecCceee---------------------------------
Confidence 12233444 4444 899999999999999999876654321
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
++..|+..++.++-.|...+| +|-|+|+..++|.
T Consensus 474 ----------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 ----------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK 507 (508)
T ss_pred ----------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence 344677778888888888889 9999999999994
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.5e-29 Score=235.79 Aligned_cols=321 Identities=15% Similarity=0.136 Sum_probs=243.3
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec---cccccccccccccccccccccCccceEEeeecccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
=|++ +.|||||++||+++.||++.+||-.+|+.+.++. .|.+.+.. +.|.|.
T Consensus 192 FV~~--VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa------------------lsWsPD----- 246 (603)
T KOG0318|consen 192 FVNC--VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA------------------LSWSPD----- 246 (603)
T ss_pred ceee--EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE------------------EEECCC-----
Confidence 4644 4999999999999999999999999999999987 55555554 445443
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++++.|.+++|||+.+++++.++..+.. +.-.++.|- +..|++.+.+|++..++...+...+.+.+|.
T Consensus 247 ----s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 247 ----STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred ----CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 77899999999999999999999888765544 445566664 6689999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-----------E--------------------Ee-----------
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-----------Q--------------------KF----------- 195 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~-----------~--------------------~~----------- 195 (579)
..|+++..+|++++|++|+ |.|.-||..++..- . .+
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 9999999999999999999 99999998544210 0 00
Q ss_pred -------------------------------ecCC--------CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 196 -------------------------------SGHP--------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 196 -------------------------------~~h~--------~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
+.+. -...+++++|++..++.++ .|+.|++|.+......
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~- 478 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELK- 478 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCccc-
Confidence 0000 1135678889999999988 7999999999887643
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC-ceEEeeecccCcccccccchhhh
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
.......+...++++.++ ||+.+||++...+.+.+||..+.+.....-. +.-.+.+.. ++|+.+ .++
T Consensus 479 --ee~~~~~h~a~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~----~vA 546 (603)
T KOG0318|consen 479 --EEAKLLEHRAAITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNK----LVA 546 (603)
T ss_pred --ceeeeecccCCceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCce----EEE
Confidence 122233455567888888 9999999999999999999998876322211 333344444 788877 899
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+|+.|..+.+|.. . ..... ......|...|..+.|-.+... +|.++|..||+|++
T Consensus 547 TGSlDt~Viiysv-----~-kP~~~-i~iknAH~~gVn~v~wlde~tv--vSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 547 TGSLDTNVIIYSV-----K-KPAKH-IIIKNAHLGGVNSVAWLDESTV--VSSGQDANIKVWNV 601 (603)
T ss_pred eccccceEEEEEc-----c-Chhhh-eEeccccccCceeEEEecCceE--EeccCcceeEEecc
Confidence 9999876554321 1 11111 2222358888999999877665 57778999999987
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=5.1e-30 Score=239.74 Aligned_cols=247 Identities=13% Similarity=0.268 Sum_probs=214.6
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .+++|+.+|..||+|+.||.++||+. +|.++.++-.|.+++..+.|+..
T Consensus 236 kdV--T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~------------------------- 287 (524)
T KOG0273|consen 236 KDV--TSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK------------------------- 287 (524)
T ss_pred CCc--ceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC-------------------------
Confidence 467 45599999999999999999999996 57777788777776665555544
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+++|++++.|+++.+||..+++...++ .-|..+-.++.|-.+ ..|++++.|+.|+++-+....++.++.+|.++|.
T Consensus 288 --G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 288 --GTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred --CCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 899999999999999999999988666 458888788888654 4689999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---------CEEEEEecCCCeEEEEEcCCC
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---------~~l~s~s~~d~~i~vwd~~~~ 232 (579)
++.|+|.|.+|++++ ++++||+.........+.+|...|..+.|+|+| ..+++++ .|++|++||+..+
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~g 442 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESG 442 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCC
Confidence 999999999999999 999999999988999999999999999999964 3577777 5999999999998
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
. ++.++..+...+..+.|+ |+|+++|+|+.||.|++|+.++++..+.....
T Consensus 443 v-----~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 443 V-----PIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred c-----eeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 7 446675666667778888 99999999999999999999999988876654
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6e-31 Score=246.94 Aligned_cols=283 Identities=11% Similarity=0.120 Sum_probs=230.2
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..|.+ +.|.| .+.+|++|+.|+.|+||++.. ++++.+|.+|..++..+.|+.+
T Consensus 215 kgvsa--i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~----------------------- 269 (503)
T KOG0282|consen 215 KGVSA--IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC----------------------- 269 (503)
T ss_pred cccch--hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc-----------------------
Confidence 44533 48999 889999999999999999876 8999999999999998888887
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..+++++-|+.|++||+++|+++.++.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+
T Consensus 270 ----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 270 ----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred ----CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 88899999999999999999999988743 3568999999998 7799999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
.|..+.|-++|+.+++++ ++++||+.+..-.++... .+.....++..+|++++++.-+ .|+.|.++.+...-....
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCH
Confidence 999999999999999998 899999999876655442 2334566899999999999887 799999999765543322
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (579)
...+.-..-...-.-+.|+ |||.+|++|+.||.+.+||.++.+.+.
T Consensus 423 kK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~----------------------------- 468 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS----------------------------- 468 (503)
T ss_pred hhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh-----------------------------
Confidence 2223222122222335565 999999999999999999987765543
Q ss_pred cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
++..|.+.++.+.|.|--.--.+||+.||.|++|+
T Consensus 469 --------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 --------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 23356667888888886654338999999999995
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.2e-31 Score=227.58 Aligned_cols=279 Identities=13% Similarity=0.128 Sum_probs=234.5
Q ss_pred CCCcccceEEEEcc---CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 2 GSSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 2 ~~~~V~~~~~~fs~---dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
++-|| +.++||| +|-+|++++.||.-.+-+-++|..+.+|.+|.+.+.+.....+
T Consensus 13 htrpv--vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n-------------------- 70 (334)
T KOG0278|consen 13 HTRPV--VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN-------------------- 70 (334)
T ss_pred CCcce--eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch--------------------
Confidence 35688 7779986 8889999999999999999999999999999988876665544
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeec
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA 157 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~ 157 (579)
....++++.|-+-++||..+|..+..+ .|.--|.+++|+.|.++|++|+.+..+++||++..+ +...+.+
T Consensus 71 -------a~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 71 -------ATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred -------hhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 455688899999999999999988776 477889999999999999999999999999997653 5667899
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|.+.|..+.|....+.++++. ++|++||.++++.+.++. ...+|+++.++++|+++.++ ..+.|..||..+-...
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL 218 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce
Confidence 999999999999888888866 999999999999999887 67889999999999987664 4788999999886643
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
....- ...+...... |+...+++|+.|+.++.||..+++.+..+
T Consensus 219 -----Ks~k~-P~nV~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~~------------------------- 262 (334)
T KOG0278|consen 219 -----KSYKM-PCNVESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGSY------------------------- 262 (334)
T ss_pred -----eeccC-cccccccccc-----CCCceEEecCcceEEEEEeccCCceeeec-------------------------
Confidence 22222 2233445554 89999999999999999999988765321
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+|.++|.++.|||||..- +|||+|+++++|...
T Consensus 263 -----------------------------nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 263 -----------------------------NKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT 297 (334)
T ss_pred -----------------------------ccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence 13788999999999999999 999999999999763
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=238.61 Aligned_cols=434 Identities=15% Similarity=0.190 Sum_probs=289.2
Q ss_pred CcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++| -+++|||... -+|+.+ .-++.||+..+......+......+.+..|..+
T Consensus 27 ~~v--ssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D------------------------ 79 (487)
T KOG0310|consen 27 NSV--SSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD------------------------ 79 (487)
T ss_pred Ccc--eeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecC------------------------
Confidence 567 4459999554 355444 347999998877776666544455555555544
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
|.++++|...|.|++||+.+...+ +.+.+|+.+|..+.|+|+++ .+++|+.|+.+++||+.+......+.+|.+.
T Consensus 80 ---G~LlaaGD~sG~V~vfD~k~r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 80 ---GRLLAAGDESGHVKVFDMKSRVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred ---CeEEEccCCcCcEEEeccccHHHH-HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 999999999999999996654444 44578999999999999655 5888889999999999988876689999999
Q ss_pred eeEEEEccCC-CEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 162 ISCMAVSSDG-KMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
|.|.+|+|-. .++++|+ |.|++||.+.. ..+.++. |..+|..+.+-|.|..++++| ...|++||+-++...
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql-- 230 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL-- 230 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee--
Confidence 9999999954 5778888 99999999987 6677775 999999999999999999886 578999999966533
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (579)
+.....+...++|..+. .++..|++++.||.+++||..+.+.+...+
T Consensus 231 --l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------------------- 277 (487)
T KOG0310|consen 231 --LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------------------- 277 (487)
T ss_pred --hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEeee--------------------------
Confidence 22334456667788887 688999999999999999976554432111
Q ss_pred cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeeccCCccccccC
Q 008058 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLP 397 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 397 (579)
-.++|.+++.|||++.+ +.|-.++.+.+-... ++. ........+
T Consensus 278 ------------------------------~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~--~k~---k~s~~~~~r 321 (487)
T KOG0310|consen 278 ------------------------------YPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRRE--VKK---KPSKEPKRR 321 (487)
T ss_pred ------------------------------cccceeeEEecCCCceE-EEecccceeeeehhh--ccc---CCCcccccc
Confidence 12378999999999998 777777776555321 110 000000000
Q ss_pred CccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcccccccCCcCCC-HHHHHHhcCCCCCCCCCCCCchhh
Q 008058 398 LPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVC-MEDRLRSLGILSNKDDLLSNSALE 476 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~ 476 (579)
..+. .....+.++. ....+.+ +.-..+.+...++ ++.+|.... ..
T Consensus 322 ~~r~-~~~~v~~r~~-------------------~~~~~~d-div~n~~~r~~L~~~Dk~Lk~F~-------------~k 367 (487)
T KOG0310|consen 322 ADRS-DGFFVKVRGQ-------------------NYKGQKD-DIVVNEVKRLKLTYFDKRLKQFK-------------HK 367 (487)
T ss_pred cccc-ccceEeeecc-------------------ccccccc-eeEeccccccCCchHHHHHhhhh-------------HH
Confidence 0000 0000000000 0000000 0000000000111 111111111 11
Q ss_pred hhhcccee----------ecccC-ChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCC
Q 008058 477 ATLFNGID----------FETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQ 545 (579)
Q Consensus 477 ~~l~~~l~----------l~~~~-~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~s~ 545 (579)
.+|...++ +++.+ -.-.+...+....-.-+.+||.||.+ .-+.+.-...++.|+..+|-..+.-+...
T Consensus 368 kALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~-~l~~~rf~~~L~~~~~~iLd~Y~~~i~~s 446 (487)
T KOG0310|consen 368 KALDHVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVK-NLTVVRFASILMEVVSVILDLYARDIEGS 446 (487)
T ss_pred HHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHhhhccC
Confidence 11211110 11111 12366777777888889999999995 44666678899999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhh--hhhhhhhceeeeEe
Q 008058 546 ESLTPMLSSLYKVRKKKL--FASAFTCFILLYLF 577 (579)
Q Consensus 546 ~~l~~~l~~l~~~~~~r~--~~~~~~~~~~~~~~ 577 (579)
|.+...+..|...+++-+ +..++...+-|.||
T Consensus 447 ~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL 480 (487)
T KOG0310|consen 447 PMLAKLIQALRGKVEQEVRVQKELLRLIGMLDML 480 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 55555444444433
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-30 Score=233.90 Aligned_cols=237 Identities=19% Similarity=0.319 Sum_probs=208.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..| ..++|+..|+++|+++.|=.+++||.++ .+++....+|...+.++.|-|.
T Consensus 151 ~sv--~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~------------------------ 204 (406)
T KOG0295|consen 151 DSV--FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL------------------------ 204 (406)
T ss_pred cce--eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec------------------------
Confidence 447 4559999999999999998899999876 4555555555555554444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.+|++++.|.+|+.|++.+|.++.++ .+|..-|..+..+.||..+++|+.|.+|++|-+.++++...++.|..+|
T Consensus 205 ---gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 205 ---GDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred ---CCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 789999999999999999999999777 6899999999999999999999999999999999999999999999999
Q ss_pred eEEEEccC---------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 163 SCMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 163 ~~l~~~p~---------------g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
.|++|.|. ++++.+++ ++|++||+.++.++.++.+|...|..++|+|.|+||++++ +|++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktlr 359 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTLR 359 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcEE
Confidence 99999863 25788888 8999999999999999999999999999999999999998 799999
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
+||+++.+ |..++..+..++.+..|. .+..++++|+-|-++++|..
T Consensus 360 vwdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 360 VWDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence 99999987 556777888899999997 66779999999999999964
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=239.12 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=199.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++||++ .||++|.++++|+.+|.|++|+..- ..+..++. |....++++++.|.
T Consensus 137 HDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a-----------------hh~eaIRdlafSpn----- 191 (464)
T KOG0284|consen 137 HDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQA-----------------HHAEAIRDLAFSPN----- 191 (464)
T ss_pred hcccceeE--EEccCCCEEEEcCCCceEEecccch-hhhHHhhH-----------------hhhhhhheeccCCC-----
Confidence 56899666 9999999999999999999999753 33333443 33344445555543
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
...+++|+.||.|+|||....+....+ .+|...|.++.|+|....+++++.|..|++||.++|.++.++.+|+..
T Consensus 192 ----DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 192 ----DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT 266 (464)
T ss_pred ----CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce
Confidence 566999999999999999887766444 799999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
|..+.|+|++++|++++ ..+++||+++.+.+..+.+|...|+++.|+|-..-|++++..||.|..|.+...+.. .
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~ 343 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---G 343 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---c
Confidence 99999999999999999 799999999999999999999999999999976655555558999999999854433 2
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
.... .+...+..+.+. |-|..|++|+.|.++++|.
T Consensus 344 ~i~~-AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 344 EIPP-AHDGEIWSLAYH-----PLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CCCc-ccccceeeeecc-----ccceeEeecCCCcceeeec
Confidence 2223 344455566666 9999999999999999995
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-29 Score=250.99 Aligned_cols=258 Identities=16% Similarity=0.199 Sum_probs=225.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++.|+.+ +|+|.-.+++++--.|.|++||.+=+.++..|..|.+++..+.|++.
T Consensus 9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------ 62 (1202)
T KOG0292|consen 9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------ 62 (1202)
T ss_pred cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence 4567667 99999999999999999999999999999999999999999999887
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
..++++|+.|..|++|+..+.+++.++ .||.+-|+.+.|++.-.+|+++|.|.+|+||+..+++++..+.+|...|
T Consensus 63 ---qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ---CCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 788999999999999999999999887 5899999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCC---------------------------e--eeEEeecCCCCEEEEEEecCC
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDH---------------------------K--KMQKFSGHPGAVRFMTFSDNG 211 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~---------------------------~--~~~~~~~h~~~v~~l~~~~~~ 211 (579)
.|..|+|....+++++ .+|+|||+..- . ....+.||...|+.++|+|.-
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 9999999999999999 89999998421 0 013457999999999999999
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+++++ +|+.|++|.+...+.. .+-+...|-..++++-|. |....|++.++|++|+|||+.....+++..
T Consensus 219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence 9999988 7999999999876533 233444555666777776 888999999999999999999888887775
Q ss_pred CceEEeee
Q 008058 292 ATKILSSS 299 (579)
Q Consensus 292 ~~~~~~~~ 299 (579)
....+...
T Consensus 290 rendRFW~ 297 (1202)
T KOG0292|consen 290 RENDRFWI 297 (1202)
T ss_pred ccCCeEEE
Confidence 55544443
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-27 Score=214.42 Aligned_cols=250 Identities=16% Similarity=0.196 Sum_probs=202.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.| .++.|+++|+++++++.|.+++|||..+|.++.++..+...+....|...
T Consensus 14 ~~~i--~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------ 67 (311)
T KOG1446|consen 14 NGKI--NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------ 67 (311)
T ss_pred CCce--eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC------------------------
Confidence 4667 45599999999999999999999999999999999877766666666544
Q ss_pred ccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 83 KLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
...++.++. |.+|+..++.+++.+ +++.||...|++++.+|-+..+++++.|++|++||++..++...+.....
T Consensus 68 ---~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 68 ---SNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred ---CceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 444555555 677999999999998 55689999999999999999999999999999999998887776654443
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
..++|+|+|-++|++. +.|++||++.- .+..+|. +-....+.|.|+|||++++.+. ..+.+++.|.-.|.
T Consensus 144 --pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 144 --PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT 220 (311)
T ss_pred --cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc
Confidence 3579999999999998 58999999863 3455553 3366789999999999999987 68999999999987
Q ss_pred cccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058 234 KQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 234 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
.. ..+... ......-..+|+ ||++++++|+.||+|++|+++++..+....+.
T Consensus 221 ~~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 221 VK---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred Ee---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 54 223222 222233456676 99999999999999999999999988776654
No 44
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.7e-28 Score=241.49 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=223.5
Q ss_pred eEEEE-ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSF-SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~f-s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+.|+| .|+.++||.+++.+.+|+|+..+..+. .+.+|...+.++. .|.. +.
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~-----------------~~~~----------g~ 378 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD-----------------VWSS----------GD 378 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee-----------------eccc----------Cc
Confidence 34454 677899999999999999999888776 5666655554332 2222 67
Q ss_pred EEEEEECCCeEEEEEccCCeEE---EEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-----ee----eE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-----LL----GK 154 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~---~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~-----~~----~~ 154 (579)
+|++|+.|.++++|.+..+... .....+|++.|.+++++..+ .+|+++|.|+++++|++...+ .+ .+
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 8999999999999988544321 12236899999999997755 468999999999999997521 11 13
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
...|...|+|++++|+.+++++|+ .+.+||++...+...++.||...|.++.|+|..+.+++++ .|++|+||.+.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~f 537 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTF 537 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccc
Confidence 456899999999999999999999 8999999999999999999999999999999999999987 7999999999987
Q ss_pred ccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccc
Q 008058 233 KKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 233 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
. |..++. |...++.+.+. .+|..|++++.||-|++|++++.+.+.+
T Consensus 538 S-----ClkT~eGH~~aVlra~F~------~~~~qliS~~adGliKlWnikt~eC~~t---------------------- 584 (775)
T KOG0319|consen 538 S-----CLKTFEGHTSAVLRASFI------RNGKQLISAGADGLIKLWNIKTNECEMT---------------------- 584 (775)
T ss_pred e-----eeeeecCccceeEeeeee------eCCcEEEeccCCCcEEEEeccchhhhhh----------------------
Confidence 5 667887 55555555555 5899999999999999999887765432
Q ss_pred hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
+.+|...|+.++.+|++.++ +||+.|+.+.+|.
T Consensus 585 ---------------------------------lD~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 585 ---------------------------------LDAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK 617 (775)
T ss_pred ---------------------------------hhhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence 33788899999999999998 9999999999995
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.9e-28 Score=209.90 Aligned_cols=276 Identities=13% Similarity=0.104 Sum_probs=216.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.+|++|+.|..+.+|-...|+.+.++ .||++.|+|+..+-+.+++++|+.|.++++||+.+|+++.+++ ...+|..+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~ 99 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV 99 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence 999999999999999999999999777 7999999999999999999999999999999999999999998 45689999
Q ss_pred EEccCCCEEEEEC-------CeEEEEECC-------CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 166 ~~~p~g~~l~~~~-------g~i~vwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.|+++|++++... +.|.++|++ ..+++..+..+.+.++.+.|.|-+++++++. .||.|.+||+++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~ 178 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART 178 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence 9999999888765 589999998 4456888888999999999999999999987 799999999999
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccc
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
++.. +.....+...++.+.++ ++..++++++.|.+.++||..+.+.+++.....+..+.. ++|...
T Consensus 179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa--isP~~d--- 244 (327)
T KOG0643|consen 179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA--ISPLLD--- 244 (327)
T ss_pred Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeeccccccee--cccccc---
Confidence 8643 23334445567777777 999999999999999999999999888765444332222 233322
Q ss_pred hhhhhcccccee-cCC---ceEEE-EEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 312 AAIFAAKLQDIV-KPA---SVHTF-VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 312 ~~i~~~~~~~~~-~~~---~~~~~-~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
..|+.|..+... ..- .|+.- -.+.......+..+.+|.+++.+++|+|||+.. +||++|+.+++--.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHF 316 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEe
Confidence 034444333210 000 00000 000011124556788999999999999999999 99999999998765
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=5.6e-30 Score=230.46 Aligned_cols=238 Identities=14% Similarity=0.251 Sum_probs=197.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++.| +|+.| |.+.+++|+.|.+|+|||+.+|+++.++-.|...+..+.|+
T Consensus 236 HtGSV--LCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~------------------------- 286 (499)
T KOG0281|consen 236 HTGSV--LCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS------------------------- 286 (499)
T ss_pred CCCcE--Eeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-------------------------
Confidence 46788 87777 56699999999999999999999999888777666655554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
+.++++++.|.+|.+||+..... ..+.+.||...|+.+.| +.+++++++.|.+|++|++.+++.++++.+|.
T Consensus 287 ----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 287 ----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred ----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhccc
Confidence 67899999999999999986542 33456799999999999 56799999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS- 236 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~- 236 (579)
.+|.|+.+ .|+++++|+ ++|++||+..|.+++.+.||+.-|.++.|. .+.+++|+ .||+|++||+..+....
T Consensus 361 RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 361 RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCcc
Confidence 99999887 488999998 899999999999999999999999999995 55789988 79999999998765331
Q ss_pred ---ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
..|+..+..+...+-...| |...|++++.|.+|.|||..++-.
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQF-------D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccchHHHhhhhccceeEEEee-------cceEEEeccCCCeEEEEEcCCCCc
Confidence 2233343333333334445 568899999999999999877644
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=245.26 Aligned_cols=259 Identities=15% Similarity=0.197 Sum_probs=191.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE---------------------------Eec--------cc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---------------------------EFA--------DI 46 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~---------------------------~~~--------~~ 46 (579)
+.+.| +++.||+||+|||+||.||.|+||.+....... ... +.
T Consensus 266 h~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 266 HKGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cCCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 46789 889999999999999999999999987511100 000 00
Q ss_pred cc-----ccccccccccc---ccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC
Q 008058 47 AS-----TETTSLYGNRL---EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118 (579)
Q Consensus 47 ~~-----~~~~~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~ 118 (579)
.. +.....|+... ..||.+ .+-.+.|.. +++|++++.|.+|++|++...+++..+ .|.+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hnd 410 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHND 410 (712)
T ss_pred CCccccCCCccccccccchhhhhccch-hheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCC
Confidence 00 00111111110 124433 455677765 789999999999999999999999777 4999
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008058 119 GVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 119 ~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~ 195 (579)
-|+|++|+| |.+||++|+.||.|++|++...+.+.-.. -..-|++++|.|||+..++|+ |.+++|+....+....+
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 999999999 88899999999999999998766554444 447899999999999999999 99999999887766554
Q ss_pred ec--C------CCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcE
Q 008058 196 SG--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY 266 (579)
Q Consensus 196 ~~--h------~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (579)
.- | ...|+++.|.|... .+++++ .|..|+|+|.+..... +.+.-.+.........|+ .||++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~ 560 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKH 560 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCE
Confidence 21 1 12799999997544 344454 6999999999776543 333333444444556666 89999
Q ss_pred EEEEEcCCeEEEEECCCce
Q 008058 267 VLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 267 l~s~~~dg~i~iwd~~~~~ 285 (579)
|+++++|..|++|+.+...
T Consensus 561 IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 561 IVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEEeecCceEEEEeCCCCc
Confidence 9999999999999976544
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.2e-28 Score=245.52 Aligned_cols=238 Identities=24% Similarity=0.377 Sum_probs=202.4
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..|+++ +|+|||+++++++.|++|+|||+ ..+.++.++++|...+.++.|++.
T Consensus 204 ~~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------------------------ 257 (456)
T KOG0266|consen 204 RGVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------------------------ 257 (456)
T ss_pred cceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------------------------
Confidence 456444 99999999999999999999999 666899999999888877777776
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~ 160 (579)
++++++|+.|++|++||+.+++++..+ .+|.++|++++|++++++|++++.|+.|++||+.++. +...+..+..
T Consensus 258 ---g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 258 ---GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred ---CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence 789999999999999999999998666 7899999999999999999999999999999999998 5677776665
Q ss_pred C--eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE---EEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 161 G--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV---RFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~--v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v---~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
. ++++.|+|++.+++++. +.+++||++.+..+..+.+|...+ .+...++.++++++++ .|+.|++|++.++.
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGG 412 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccc
Confidence 5 99999999999999998 699999999999999999998753 3345567899999987 79999999999865
Q ss_pred cccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECC
Q 008058 234 KQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ 282 (579)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 282 (579)
.. ..+..+ ...+....++ |...++++++ .|+.+++|..+
T Consensus 413 ~~-----~~l~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 413 IL-----QRLEGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hh-----hhhcCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecCC
Confidence 33 233344 4455555565 8889999998 68899999653
No 49
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=3.2e-26 Score=228.30 Aligned_cols=312 Identities=14% Similarity=0.177 Sum_probs=246.4
Q ss_pred EEccCC--CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 12 SFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
-++|+. +.++.|+.+|.+.+|++++++.+.+|+.+...++.+.-+|. -+.+
T Consensus 165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVV 217 (910)
T KOG1539|consen 165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVV 217 (910)
T ss_pred EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEE
Confidence 356654 56889999999999999999999999977766665555544 5779
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee-----------
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR----------- 156 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~----------- 156 (579)
++|..+|+|.+++++.++.+..+. | .++|++++|..||+. +++|+..|.+.+||+...+.+...+
T Consensus 218 aiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 218 AIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred EEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 999999999999999999998884 5 489999999999987 5666677999999997543221111
Q ss_pred --------------------------------------------------------------------------------
Q 008058 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence
Q ss_pred ----------------------------------------------------------------cCC------CCeeEEE
Q 008058 157 ----------------------------------------------------------------AST------KGISCMA 166 (579)
Q Consensus 157 ----------------------------------------------------------------~~~------~~v~~l~ 166 (579)
.+. ..+++++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 111 3577888
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
.++.|++.+.|. |.|-+|++++|-...+| +.|.++|++++...-++.+++++ .+|.++.||....... ...
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l 531 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSL 531 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eee
Confidence 899999999887 99999999999888888 58999999999999999999998 6999999999887633 222
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
.+.+.. ...+ .. .....++.+.+|-.|.++|..+.+..+.+.++...+.... ||++++ .+++++.|+
T Consensus 532 ~l~~~~--~~iv-~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~ 598 (910)
T KOG1539|consen 532 RLGSSI--TGIV-YH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDS 598 (910)
T ss_pred ccCCCc--ceee-ee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCC
Confidence 232222 2222 22 3557788889999999999999999999988888887776 899999 999999999
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce-ecccceee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRYV 379 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d-~~~~~w~~ 379 (579)
.++.||. ....+...+ .-..+.+++.|||+|.+| ++...| .-|++|.-
T Consensus 599 tIr~wDl--------pt~~lID~~-~vd~~~~sls~SPngD~L-AT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 599 TIRTWDL--------PTGTLIDGL-LVDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWSN 647 (910)
T ss_pred cEEEEec--------cCcceeeeE-ecCCcceeeEECCCCCEE-EEEEecCceEEEEEc
Confidence 9998762 222233333 334589999999999999 888888 66899954
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=217.14 Aligned_cols=274 Identities=14% Similarity=0.182 Sum_probs=215.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .++.||.||.|||||+.+|.|+||+..++.....+. ..+..+.|....|.
T Consensus 107 DSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---------------------~e~~dieWl~WHp~---- 159 (399)
T KOG0296|consen 107 DSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---------------------QEVEDIEWLKWHPR---- 159 (399)
T ss_pred Cce--EEEEEccCceEEEecCCCccEEEEEcccCceEEEee---------------------cccCceEEEEeccc----
Confidence 356 778999999999999999999999999998877663 12223445444444
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCe
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGI 162 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v 162 (579)
+..|++|+.||.+..|.+..+... +++.||+.++++=.|.|+|+.++++..||+|++||+.+++++.++.... ...
T Consensus 160 --a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 160 --AHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred --ccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence 889999999999999999986444 4557899999999999999999999999999999999999998877433 367
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEec---CCCEEEEEecCCCeEEEEEc
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSD---NGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~---~~~~l~s~s~~d~~i~vwd~ 229 (579)
.++.++..+..++.|+ +.+++-+..+++.+..+. .+...+.++.+.| .-+..++++ -||+|.|||+
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~ 315 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDL 315 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEec
Confidence 8899999999998888 788888888887766555 3555556665555 344455554 7999999999
Q ss_pred CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccc
Q 008058 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (579)
...+.+ ....|+..++.+.+. + ..+|++++.+|.|+.||.++|+.+....++...+-... .+++.+
T Consensus 316 a~~~~R-----~~c~he~~V~~l~w~------~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~- 381 (399)
T KOG0296|consen 316 AASTLR-----HICEHEDGVTKLKWL------N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKR- 381 (399)
T ss_pred ccchhh-----eeccCCCceEEEEEc------C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCc-
Confidence 987654 345577776666654 4 68999999999999999999999988888776666544 455555
Q ss_pred cchhhhhccccceecC
Q 008058 310 ATAAIFAAKLQDIVKP 325 (579)
Q Consensus 310 ~~~~i~~~~~~~~~~~ 325 (579)
.+++++.|+..+.
T Consensus 382 ---~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 382 ---LVVTVSDDNTALV 394 (399)
T ss_pred ---EEEEecCCCeEEE
Confidence 7888888764443
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-28 Score=243.57 Aligned_cols=236 Identities=15% Similarity=0.168 Sum_probs=204.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+++++--+|.|.+||.+.+.++.++ .+|.++|++++|+|++..|++|+.|-.|++|+..+.+++.++.+|-+.|..+
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence 678999999999999999999999777 5799999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-------
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS------- 236 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~------- 236 (579)
.|++.-.++++++ .+|+||+.++++++..++||...|.|..|+|....+++++ -|.+|+|||+..-++..
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS-LDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec-ccceEEEEeecchhccCCCCCCch
Confidence 9999999999999 8999999999999999999999999999999988999987 69999999986543221
Q ss_pred -----------------ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058 237 -----------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 237 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
...-+.++.|+.-+..++|. |.-..|++|++|..|++|.....+.
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmnetKa------------- 240 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMNETKA------------- 240 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEeccccc-------------
Confidence 11223345666677777886 7778999999999999997532211
Q ss_pred cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|- .+++.||.+.|.++.|.|...++ +|.|+|+++++|++
T Consensus 241 -------------------------------WE---------vDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm 279 (1202)
T KOG0292|consen 241 -------------------------------WE---------VDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDM 279 (1202)
T ss_pred -------------------------------ee---------ehhhhcccCCcceEEecCcccee-EecCCCccEEEEec
Confidence 00 12567999999999999999999 99999999999999
Q ss_pred eec
Q 008058 380 QNR 382 (579)
Q Consensus 380 ~~~ 382 (579)
..+
T Consensus 280 ~kR 282 (1202)
T KOG0292|consen 280 TKR 282 (1202)
T ss_pred ccc
Confidence 754
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.7e-27 Score=226.88 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=198.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.-|||+- .|=+--+++++|+.|..|+||+..+++.++.|..|..-+.++..+|.
T Consensus 55 ~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt------------------------ 108 (794)
T KOG0276|consen 55 EVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT------------------------ 108 (794)
T ss_pred ccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC------------------------
Confidence 4578666 88888899999999999999999999999999988776665555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
..++++++.|-.|++||.+.+=...+.++||.--|.+++|+| |.+.+++++.|++|++|.+.+..+..++++|...
T Consensus 109 ---~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG 185 (794)
T KOG0276|consen 109 ---LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG 185 (794)
T ss_pred ---CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence 567999999999999999987665566789999999999999 6678999999999999999999999999999999
Q ss_pred eeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 162 ISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g--~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
|+|+++-+.| .+|++|+ .+|+|||.++..++.++.||...|+.+.|+|.-..+++|+ +||++++|+..+-+..
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE-- 262 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE-- 262 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh--
Confidence 9999998754 6999998 8999999999999999999999999999999999999987 8999999998876543
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
.++.-....+.++... +.+..++.|.++|.|.+
T Consensus 263 ---~tLn~gleRvW~I~~~-----k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 ---KTLNYGLERVWCIAAH-----KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ---hhhhcCCceEEEEeec-----CCCCeEEEeccCCcEEE
Confidence 1222233333444433 55666777777776544
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=217.71 Aligned_cols=303 Identities=17% Similarity=0.172 Sum_probs=211.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+|+|+- +|||||.++|+|+.|..|+|.|++..--...-+.
T Consensus 112 K~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks~~~e------------------------------------- 152 (430)
T KOG0640|consen 112 KSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKSKPKE------------------------------------- 152 (430)
T ss_pred ccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhcchhh-------------------------------------
Confidence 4677666 9999999999999999999999762211000000
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~ 160 (579)
+..+ +.+.+..+.+.+-.|..+|+++.|+|....|++++.|++|++||+......+.++. ...
T Consensus 153 ------m~~~---------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 153 ------MISG---------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred ------hccC---------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccc
Confidence 0000 00111122233457999999999999999999999999999999875433333332 345
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
+|.++.|+|.|.++++|. ..+++||+.+.++...- ..|.+.|+++.+++.++..++++ .||.|++||--++++.
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCV 296 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHHH
Confidence 899999999999999998 79999999998876543 46899999999999999888887 7999999998777644
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc----eEEeeecccCcccccccc
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT----KILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 311 (579)
..+.-.|.+..+....|. .+|++|++.+.|..+++|.+.+++.+....+. +.......+|.....
T Consensus 297 ---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd--- 365 (430)
T KOG0640|consen 297 ---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED--- 365 (430)
T ss_pred ---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc---
Confidence 223345777788888887 89999999999999999999999988665432 111111111111111
Q ss_pred hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+++.-... .+.+...+.......-.--.||.+.+..+.-||.+.-+ ++||.|...++|.-
T Consensus 366 -yVl~pDEa------s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 366 -YVLFPDEA------SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR 425 (430)
T ss_pred -eEEccccc------cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence 11111110 11111111111111111235899999999999999998 99999999999975
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4e-27 Score=204.57 Aligned_cols=249 Identities=14% Similarity=0.261 Sum_probs=204.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++|+++ +|+.+|..||+|+.|++++||+++..+...... ..||.+ .+..++|.+.+
T Consensus 19 ~~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---------------~~gh~~-svdql~w~~~~---- 76 (313)
T KOG1407|consen 19 HVQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---------------YRGHTD-SVDQLCWDPKH---- 76 (313)
T ss_pred hhhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhc---------------ccCCCc-chhhheeCCCC----
Confidence 34677444 999999999999999999999998775443322 123322 33456676665
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++++.|..|++||...++++.++. ..+.=.-+.|+|+|.+++.++.|..|...|.++.+.....+ ....
T Consensus 77 ----~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e 149 (313)
T KOG1407|consen 77 ----PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFE 149 (313)
T ss_pred ----CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccce
Confidence 6789999999999999999999987773 34445667899999999999999999999999888776655 3456
Q ss_pred eeEEEEccCCCEEEEE-C-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 162 ISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~-~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
+..++|+.++.+++.. + |.|.|.....-+++.+++.|.....+|.|+|+|+||++|+ .|-.+.+||++..- |
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi-----C 223 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI-----C 223 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh-----h
Confidence 7888998777766554 4 8999999999999999999999999999999999999998 69999999998754 5
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
...+...+..++.+.|+ .+|++||++++|..|-|=++++|..+..+
T Consensus 224 ~R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred heeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEEEe
Confidence 56677788889999998 99999999999999999999988776543
No 55
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=219.37 Aligned_cols=218 Identities=17% Similarity=0.277 Sum_probs=192.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.++++|+.|++|+|||+.+|++..++ .||-..|..+++++-..|+++++.|+.|+.||+...+.++.+.+|-..|.|+
T Consensus 163 n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 789999999999999999999998766 6899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
+.+|.-..|++|+ .+++|||+++...+..+.||..+|.++.+.|....+++++ .|++|++||++.++. ..++
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt-----~~tl 315 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKT-----MITL 315 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCce-----eEee
Confidence 9999999999999 7999999999999999999999999999999888999987 799999999999874 3567
Q ss_pred ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccce
Q 008058 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (579)
.++...+.+++.. |....+|+++.| .|+-|++..+..+.++..+...+.+....+.+ .+++|+..|.
T Consensus 316 t~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~------v~~~G~dng~ 382 (460)
T KOG0285|consen 316 THHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG------VLVSGGDNGS 382 (460)
T ss_pred ecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc------eEEEcCCceE
Confidence 7888888888887 887888888776 79999999999998877766655554422222 6677766553
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=202.39 Aligned_cols=264 Identities=14% Similarity=0.124 Sum_probs=213.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+++.++|+.|.+|++|++..|.++.++ .+|...|.+++.+.|+..|++|+.|..|.+||+.+|+..+.|++|.+.|+.+
T Consensus 29 GnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 29 GNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred CCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 999999999999999999999999777 6899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
.|+.+...+++|+ .++++||.++. ++++.+......|.++..+ +..+++++ .||+++.||++.+...
T Consensus 108 ~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS-~DGtvRtydiR~G~l~------ 178 (307)
T KOG0316|consen 108 RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS-VDGTVRTYDIRKGTLS------ 178 (307)
T ss_pred EecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec-cCCcEEEEEeecceee------
Confidence 9999999999999 89999999864 6788888888899999886 44566665 7999999999998743
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc-Ccccccccchhhhhcccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV-NSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 320 (579)
.+.-+..++++.|+ ++++..++++.|+++++.|-.+|+.++..++++...--.+. +.. +...+++|+.|
T Consensus 179 -sDy~g~pit~vs~s-----~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q----sdthV~sgSED 248 (307)
T KOG0316|consen 179 -SDYFGHPITSVSFS-----KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSED 248 (307)
T ss_pred -hhhcCCcceeEEec-----CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc----cceeEEeccCC
Confidence 34455678899998 99999999999999999999999999887776543221110 111 12378899998
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCC-cEEEeecCCcceeeccccceecccceee
Q 008058 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGE-DINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|.++.|+ .......-++..|... +..+.+.|.-.-+ +++. ++....|.-
T Consensus 249 G~Vy~wd--------Lvd~~~~sk~~~~~~v~v~dl~~hp~~~~f-~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 249 GKVYFWD--------LVDETQISKLSVVSTVIVTDLSCHPTMDDF-ITAT-GHGDLFWYQ 298 (307)
T ss_pred ceEEEEE--------eccceeeeeeccCCceeEEeeecccCccce-eEec-CCceeceee
Confidence 8877755 2222333355556655 7888888876655 4443 456667754
No 57
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.5e-26 Score=232.76 Aligned_cols=255 Identities=15% Similarity=0.151 Sum_probs=195.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.+++|+..+++++.+.....|+...+..+..+.... .. .-.++...+|. ..+.++.|.|.+ +.+|++
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~---~~~~~~l~GH~-~~V~~v~fsP~d--------~~~LaS 93 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KL---ASNPPILLGQE-GPIIDVAFNPFD--------PQKLFT 93 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cC---CCCCceEeCCC-CCEEEEEEcCCC--------CCEEEE
Confidence 677887778888888888899876664433222111 00 00112233553 467889998854 678999
Q ss_pred EECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 92 GTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
|+.||.|++||+.++. .+.. +.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 9999999999998653 2333 46899999999999975 6899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccc
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~s~---~d~~i~vwd~~~~~~~~~ 237 (579)
+++|+|+|++|++++ +.|++||+++++.+.++.+|.+. +..+.|.+++..+++++. .|+.|++||++......
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~- 251 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY- 251 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-
Confidence 999999999999998 89999999999999999999865 456789998888887652 47899999998764320
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeec
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR 288 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 288 (579)
..... +....+....|+ +++.+|++++ .||.|++||+.+++.+.
T Consensus 252 -~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 252 -STVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred -eEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 11111 223344455666 8999998887 49999999998887654
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.4e-26 Score=220.67 Aligned_cols=233 Identities=21% Similarity=0.299 Sum_probs=196.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+.|+|+++++++++.||.|++|++.+++....+..+... +.++.|.+. +.+
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~---------~~~ 107 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------------------VSSVAFSPD---------GRI 107 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc------------------EEEEEEcCC---------CCE
Confidence 36699999999999999999999999988777776644433 345555543 566
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++++.+|.|.+||+.+++....+ ..|...|.++.|+|++.++++++.|+.|++||+++++.+..+..|...+.+++|+
T Consensus 108 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 108 LSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 777777999999999988877666 4788999999999999888888889999999999999999999888899999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+++.+++++ +.|++||+++++.+..+..|...+.++.|+|++.++++++ .|+.+++|++..++.. ..+..+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~ 260 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGH 260 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEcccc
Confidence 9998888877 8999999999999988888999999999999987777765 6999999999876533 333344
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
...+..+.|+ |++.++++++.||.+++|+
T Consensus 261 ~~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWS-----PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence 5566777787 8899999999999999996
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.4e-27 Score=202.93 Aligned_cols=284 Identities=14% Similarity=0.162 Sum_probs=216.9
Q ss_pred ceEEEEccC-CCEEEEEe-------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 8 DILTSFSPA-LDYFAICS-------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 8 ~~~~~fs~d-g~~las~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
..++.|||= .++||.+. ..|++.|-++..++-+.++.... ..-..-.++|.+..
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d----------------~~D~LfdV~Wse~~-- 72 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD----------------TEDGLFDVAWSENH-- 72 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee----------------cccceeEeeecCCC--
Confidence 346699992 33455432 36889999986555444433111 12234467787765
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
.+.+++++.||++++||...........++|...|.++.|++ +++.+++++-|++|++||...++.+++|.+|
T Consensus 73 ------e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 73 ------ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred ------cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 778999999999999997665544455578999999999998 4556888899999999999999999999999
Q ss_pred CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 159 ~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
...|....|+| .++++++++ +.+++||++.......+..|...+.++.|+.-...++.++..|+.|+.||++..+.
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~- 225 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT- 225 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-
Confidence 99999999999 567888877 89999999875444448999999999999976555554445799999999998763
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
+++.+..+...++-+.|++ .....|++++.|=+++|||.......
T Consensus 226 ---pl~eL~gh~~AVRkvk~Sp----h~~~lLaSasYDmT~riw~~~~~ds~---------------------------- 270 (311)
T KOG0277|consen 226 ---PLFELNGHGLAVRKVKFSP----HHASLLASASYDMTVRIWDPERQDSA---------------------------- 270 (311)
T ss_pred ---cceeecCCceEEEEEecCc----chhhHhhhccccceEEecccccchhh----------------------------
Confidence 4677788888899999983 23467899999999999986433211
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceeccccee
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~ 378 (579)
.+++.-|+..+..+.||+ ++.++ ++++.|.++++|+
T Consensus 271 --------------------------~e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 271 --------------------------IETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN 307 (311)
T ss_pred --------------------------hhhhhccceEEeccccccccCcee-eecccccceeeec
Confidence 112335777788888886 55667 9999999999996
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=2.7e-26 Score=203.37 Aligned_cols=238 Identities=14% Similarity=0.211 Sum_probs=203.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| +-+.|.+|++.+++++.|.+|+.||+++|++...+++|..-++.+. +.
T Consensus 89 HsgAV--M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~----------------------- 141 (338)
T KOG0265|consen 89 HSGAV--MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS----------------------- 141 (338)
T ss_pred cccee--EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence 46788 5559999999999999999999999999999999987776555332 10
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+..++.+++.||++++||+++.+.+..+. ..-+++++.|..++..+++|+-|+.|++||++.+...+++.+|.++
T Consensus 142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred -ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 1136788999999999999999988876552 4568999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCC----CeeeEEeecCCC----CEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSD----HKKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~----~~~~~~~~~h~~----~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
|+.+..+|+|.++.+-+ .++++||++. .+++..+.+|.. ....++|+|+++++-+++ .|+.+++||...
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS 297 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence 99999999999999988 8999999984 355788877653 244679999999887776 699999999887
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
.. .++.++.+...+..+.|. |...+|.+++.|.+|++=+
T Consensus 298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEeec
Confidence 55 567888888899999998 9999999999999998754
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-26 Score=226.07 Aligned_cols=271 Identities=17% Similarity=0.241 Sum_probs=218.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.|+ ..+.||.|.. ..|++|+..++........+ ...++++.|.+. +.+|++
T Consensus 184 dWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~Lav 234 (484)
T KOG0305|consen 184 DWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLAV 234 (484)
T ss_pred hcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEEE
Confidence 677 4457777764 47999999999865544322 345667777765 899999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEEccC
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSD 170 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~ 170 (579)
|..+|.|.|||..+.+.+..+...|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 99999999999999888877754499999999997 66899999999999999998766555 8889999999999999
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC-CCEEEEEe-cCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-GKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++++|+|+ +.+.|||....++..++..|...|..++|+|- ...||+|+ ..|+.|++||..+++.. ......
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vdtg 387 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVDTG 387 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----cccccC
Confidence 99999999 89999999888899999999999999999994 34566644 46899999999988744 334334
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceec
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (579)
. .+..+.|+ +..+-|+++. .++.|.||+..+.+.+
T Consensus 388 s-QVcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~~------------------------------------- 424 (484)
T KOG0305|consen 388 S-QVCSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKLV------------------------------------- 424 (484)
T ss_pred C-ceeeEEEc-----CCCCEEEEecCCCCCcEEEEecccccee-------------------------------------
Confidence 4 44555665 6666566553 3778999987653221
Q ss_pred CCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+.+|...|..+++||||..+ ++|+.|.++++|++-
T Consensus 425 ------------------~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 425 ------------------AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLF 461 (484)
T ss_pred ------------------eeecCCcceeEEEEECCCCCEE-EEecccCcEEecccc
Confidence 1456899999999999999999 999999999999984
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=3.6e-26 Score=208.67 Aligned_cols=271 Identities=14% Similarity=0.173 Sum_probs=215.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
++++++|++||.++|||.. |++...+.+|.+++ ..+.|...++. ...+++++.|.
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~i------------------k~v~~v~~n~~------~~~fvsas~Dq 169 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPI------------------KSVAWVIKNSS------SCLFVSASMDQ 169 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceEEEEecCCcce------------------eeeEEEecCCc------cceEEEecCCc
Confidence 6799999999999999974 88888887665544 35566655544 45799999999
Q ss_pred eEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-------------------------C
Q 008058 97 DVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------------------------T 148 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-------------------------~ 148 (579)
++++|....++.... ...||...|-++...++|..+++|+.|.++.+|+.. +
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 999999988764322 224899999999999999999999999999999932 1
Q ss_pred CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
+.++.++.+|..+|.++.|++ ...+++++ .+|+.||+.+++.+.++.+ .....++..+|..+.|++++ .|+.+++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl 326 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL 326 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence 235667889999999999997 66778888 8999999999999888874 56789999999998888887 6999999
Q ss_pred EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce-eecccCCceEEeeecccCcc
Q 008058 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (579)
||.+++... ...+.+..|...+..+.+++ .+...|++|+.||++++||+++.. .+..+.++...+.+.+
T Consensus 327 ~DPR~~~gs--~v~~s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd---- 396 (423)
T KOG0313|consen 327 WDPRTGDGS--VVSQSLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD---- 396 (423)
T ss_pred cCCCCCCCc--eeEEeeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe----
Confidence 999988532 34455666666888888873 345678999999999999999887 7877777766666544
Q ss_pred cccccchhhhhccccceecCCc
Q 008058 306 SQKSATAAIFAAKLQDIVKPAS 327 (579)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~ 327 (579)
+.... .|++|+.|..++++.
T Consensus 397 -W~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 397 -WNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred -ccCCc-eEEeccCcceEEEec
Confidence 33222 788999887666644
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=8.4e-28 Score=225.88 Aligned_cols=241 Identities=21% Similarity=0.273 Sum_probs=195.7
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd 145 (579)
.++++.|+|.. +.+|++++.|+.|+||++.. +.++.++ .+|..+|.+++|+++|..|++++-|+.+++||
T Consensus 216 gvsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 216 GVSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccchhhhccce--------eeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 45677777754 78999999999999999987 6666554 78999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058 146 PLTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~ 222 (579)
+++|+++..|.. ...++|+.|+|++ +.+++|+ +.|+.||+++++.+..+..|-+.|..+.|-++|+++++++ +|+
T Consensus 287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk 364 (503)
T KOG0282|consen 287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK 364 (503)
T ss_pred cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc
Confidence 999999999873 4578999999998 6777776 8999999999999999999999999999999999999997 799
Q ss_pred eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
+++||+.+.+-..+ +........+.++... |++.++++-+.|+.|.+|.+...-.+..
T Consensus 365 s~riWe~~~~v~ik----~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~nk------------- 422 (503)
T KOG0282|consen 365 SVRIWENRIPVPIK----NIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLNK------------- 422 (503)
T ss_pred cEEEEEcCCCccch----hhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccCH-------------
Confidence 99999998875442 1122222333445554 9999999999999999997532211110
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC--CCcEEEeecCCcceeeccccceecccceeee
Q 008058 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS--GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+ . .+.||. +.-..+.|||||.+| +||+.|+.+.+|+-.
T Consensus 423 -----k----K------------------------------~feGh~vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 423 -----K----K------------------------------RFEGHSVAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK 462 (503)
T ss_pred -----h----h------------------------------hhcceeccCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence 0 0 122333 235788999999999 999999999999974
No 64
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=211.76 Aligned_cols=275 Identities=19% Similarity=0.262 Sum_probs=222.8
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
...|..+.+++|+.|..+.++|..+++.+..|++|.-.+....|+++ ...+++
T Consensus 226 d~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~v~~ 278 (506)
T KOG0289|consen 226 DIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDTVIT 278 (506)
T ss_pred eecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhheee
Confidence 55555578999999999999999999999999988887777777766 677899
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--CCCeeEEEEcc
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMAVSS 169 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~~~p 169 (579)
++.|-.|++|........ .....|..+|+.+..+|.|.||++++.||+..+.|+++|..+...... .-.+++.+|+|
T Consensus 279 aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred cCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 999999999999877655 334679999999999999999999999999999999999988776542 23699999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc
Q 008058 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 170 ~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
||.+|.+|. |.+++||+.++..+..|.+|.++|..+.|+.+|-||++++ +|+.|++||++..+.. ..+.+....
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~~~~ 433 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLDEKK 433 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeeccccc
Confidence 999999998 9999999999999999999999999999999999999998 7999999999987744 233333322
Q ss_pred eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCc
Q 008058 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (579)
.+..+.|+ +.|.+|+.++.|=+|++++-.+. .+.
T Consensus 434 -~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k---------------------~W~------------------- 467 (506)
T KOG0289|consen 434 -EVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK---------------------SWT------------------- 467 (506)
T ss_pred -cceeEEEc-----CCCCeEEeecceeEEEEEecccc---------------------cce-------------------
Confidence 46677787 89999999977766666642111 011
Q ss_pred eEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
....+..|.+....+.|..+.+++ +++|.|...++..
T Consensus 468 -------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 -------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA 504 (506)
T ss_pred -------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence 011233466677888888888999 9999888876653
No 65
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.1e-25 Score=226.65 Aligned_cols=229 Identities=14% Similarity=0.171 Sum_probs=173.5
Q ss_pred EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008058 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (579)
Q Consensus 23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd 102 (579)
|+.++.|++|+......+..+.+|...+ .+++|.|.+ +.+|++|+.||.|++||
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V------------------~~lafsP~~--------~~lLASgS~DgtIrIWD 103 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSI------------------LDLQFNPCF--------SEILASGSEDLTIRVWE 103 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCE------------------EEEEEcCCC--------CCEEEEEeCCCeEEEEE
Confidence 4557888889887766666676555444 455665543 57899999999999999
Q ss_pred ccCCeE-E------EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058 103 VSAGQL-K------WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (579)
Q Consensus 103 ~~~~~~-~------~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l 174 (579)
+.++.. . .....+|...|.+++|+|++.. +++++.|++|++||+++++....+. +...|.+++|+|+|.+|
T Consensus 104 i~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 104 IPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred CCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 986421 1 1223689999999999999876 5788999999999999998877776 56789999999999999
Q ss_pred EEEC--CeEEEEECCCCeeeEEeecCCCCEEEE-----EEecCCCEEEEEecCC---CeEEEEEcCCCccccceeEEeee
Q 008058 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 175 ~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l-----~~~~~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
++++ +.|++||+++++.+.++.+|.+.+... .|++++.+++++|..+ +.|++||++..... .....+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld 260 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSID 260 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEec
Confidence 9887 899999999999999999998875443 3458889999988432 47999999964321 1222333
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.....+...+.. ++|.++++|+.|++|++|++..+.
T Consensus 261 ~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCCc
Confidence 333333333333 678999999999999999987664
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=232.92 Aligned_cols=236 Identities=18% Similarity=0.307 Sum_probs=203.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
++..|. +.++++++.|++|++||..++..+.. +.+|.+.+..+.|..- +.
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~ 262 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD 262 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence 444555 56899999999999999999998887 9888887776666543 67
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
.+++|+.|.++++||..+|++...+ .+|.+.|.++... +.++++|+.|.+|++|++.++..+.++.+|.++|+++..
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 8999999999999999999999777 5899999999874 457888999999999999999999999999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
+ +.++++|+ +.|++||+.+++++.++.+|...|.++.+.+. .++++++ .|++|++||+++.. .|+.++.+
T Consensus 340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~ 411 (537)
T KOG0274|consen 340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG 411 (537)
T ss_pred c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence 8 78888888 99999999999999999999999999988765 6888887 69999999999983 25567777
Q ss_pred CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
+...+.... ..+++|++++.||+|++||..+++.++..+
T Consensus 412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred Ccccccccc-------cccceeEeccccccEEEeecccCceeeeec
Confidence 766664443 357999999999999999998888776554
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.7e-25 Score=244.58 Aligned_cols=241 Identities=17% Similarity=0.255 Sum_probs=194.8
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++| .+++|+| ++.+||+++.||+|+|||+.+++.+..+.+|...+. ++.|.+.+
T Consensus 533 ~~v--~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~------------------~l~~~p~~----- 587 (793)
T PLN00181 533 SKL--SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW------------------SIDYSSAD----- 587 (793)
T ss_pred Cce--eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE------------------EEEEcCCC-----
Confidence 345 4458987 478999999999999999999998888877665554 44554432
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~ 160 (579)
+.+|++|+.||.|++||+.++..+..+. +...|.++.|+ ++|.+|++|+.||.|++||+++++ .+..+.+|..
T Consensus 588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 6789999999999999999998876663 33689999995 578999999999999999998765 5677889999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.|.++.|. ++.++++++ ++|++||++. .+.+.++.+|...+..+.|+|++.+|++++ .|+.|++|+....
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~ 740 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence 99999997 677888887 8999999974 356888999999999999999999999988 7999999998655
Q ss_pred ccccc--------eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 233 KKQSA--------SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 233 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
..... ..-....++...+..++|+ |++..|++|+.||.|+||++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence 32200 0001112344567888887 99999999999999999985
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-26 Score=199.50 Aligned_cols=238 Identities=16% Similarity=0.230 Sum_probs=191.1
Q ss_pred eEEEEccCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg-~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
..++||++. +.+++++.||++++||... ..+++.++.|...+.+ +.|.+.. .
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S------------------vdwn~~~--------r 117 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS------------------VDWNTVR--------R 117 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEE------------------ecccccc--------c
Confidence 345999865 5788999999999999542 3466777766655543 4444433 5
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+++++.||+|++|+...++.+.++ .+|...|....|+| ..+.+++++.|+++++||++.......+..|...+.|+
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC 196 (311)
T ss_pred eeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence 67888899999999999999988776 78999999999999 67789999999999999998655455589999999999
Q ss_pred EEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 166 AVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 166 ~~~p-~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
.|+. +..++++|+ +.|+.||+++- .++..+.+|.-.|+.++|+|-..-++++++.|-++++||...+.. ++.
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds----~~e 272 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS----AIE 272 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh----hhh
Confidence 9997 556777777 89999999975 468889999999999999997654444445899999999986542 334
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
+..++...+..+.|+. -++.++|+++.|+.++||+.
T Consensus 273 ~~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEecccccc----ccCceeeecccccceeeecc
Confidence 5668888888887773 46789999999999999984
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-25 Score=194.10 Aligned_cols=239 Identities=14% Similarity=0.197 Sum_probs=190.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
...||.+ +|+|.|+|||++|.|.++.||.-..+ +++..+.+|...+.+++|+.+
T Consensus 61 krsVRsv--Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---------------------- 116 (312)
T KOG0645|consen 61 KRSVRSV--AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---------------------- 116 (312)
T ss_pred hheeeee--eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC----------------------
Confidence 3568777 99999999999999999999976544 678888888777766666555
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEe
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKF 155 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~ 155 (579)
+++|++|+.|..|-||.+..+.. ....+++|+..|..+.|+|....|++++.|.+|++|+-. ...+.+++
T Consensus 117 -----G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl 191 (312)
T KOG0645|consen 117 -----GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL 191 (312)
T ss_pred -----CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence 99999999999999999985532 234457899999999999999999999999999999765 34689999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.+|...|.+++|+|.|..|++++ ++++||-..+.- -..|..++..+.|. ++ .+++++ +|+.|++|.-...-
T Consensus 192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~g-gD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG-VIASGG-GDDAIRLFKESDSP 264 (312)
T ss_pred cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc-ceEecc-CCCEEEEEEecCCC
Confidence 99999999999999999999998 899999865321 12477889999998 44 678887 79999999866431
Q ss_pred cc-cceeEE-eeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECC
Q 008058 234 KQ-SASCVL-AMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 234 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 282 (579)
.. ....+. ....|...++++.+. | .+.+|++++.||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~-----p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWN-----PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEc-----CCCCCceeecCCCceEEEEEec
Confidence 11 111111 122445577888887 6 47899999999999999764
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6e-26 Score=213.88 Aligned_cols=231 Identities=14% Similarity=0.178 Sum_probs=195.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|-.||++||+|+..|.|+|||..+...+..+..|..++....|++. ++..
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--------------------------d~t~ 125 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--------------------------DNTM 125 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc--------------------------CCeE
Confidence 45689999999999999999999997776567778888888877777765 2778
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (579)
+++|+.|+.+++||+.+...+.. ..+|++.|.|.+|+|... .+++||.||+|++||++.. ..+.++. |..+|..+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v~~~-l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl 203 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYVQAE-LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL 203 (487)
T ss_pred EEecCCCceEEEEEcCCcEEEEE-ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence 88999999999999999987434 478999999999999654 6899999999999999877 5666666 888999999
Q ss_pred EccCCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 167 VSSDGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 167 ~~p~g~~l~~~~-g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+-|.|..+++++ +.|++||+.+| +.+..+..|...|+|+++..+++.|+++| -|+.+++||+.+.+ .+..+.
T Consensus 204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~ 277 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWK 277 (487)
T ss_pred EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeee
Confidence 999999999998 79999999955 55555566999999999999999999998 59999999977655 456677
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 279 (579)
-++.++++..+ |++..++.|..+|.+.+=
T Consensus 278 ~~~pvLsiavs------~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 YPGPVLSIAVS------PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cccceeeEEec------CCCceEEEecccceeeee
Confidence 77777776655 899999999999988776
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1e-26 Score=214.28 Aligned_cols=277 Identities=17% Similarity=0.158 Sum_probs=217.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.|+++ .|-++...|++|+.|..|++|++..++ .+.++.+..+.+....|.++
T Consensus 175 ~gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~---------------------- 230 (459)
T KOG0288|consen 175 EGEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD---------------------- 230 (459)
T ss_pred cccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC----------------------
Confidence 4567556 999998899999999999999998766 44445444444544444444
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..+++++.|+.+++|++...+...++ .+|++.|+++.|......+++|+.|.+|+.||+....+.+++-. ..
T Consensus 231 -----~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S 303 (459)
T KOG0288|consen 231 -----NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GS 303 (459)
T ss_pred -----CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cc
Confidence 778999999999999999999888666 67999999999988776699999999999999999888877542 34
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
.+..|..+ +..+++|. +.|+.||.++..+....+.+. .|+++..++++..+++++ .|.++.+.|+++....
T Consensus 304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~--- 376 (459)
T KOG0288|consen 304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR--- 376 (459)
T ss_pred cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE---
Confidence 55666665 45666666 899999999999999988765 899999999999999987 7999999999987643
Q ss_pred eEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058 239 CVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
..+.-. .....++-+.|+ |++.|+++|+.||.|+||++.+++.....+.
T Consensus 377 ~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~------------------------ 427 (459)
T KOG0288|consen 377 QTFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLSL------------------------ 427 (459)
T ss_pred EEeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEecc------------------------
Confidence 111111 111124556666 9999999999999999999988876432210
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCC-CCcEEEeecCCcceeeccccceecccce
Q 008058 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
.+. ..|++++|+|.|.+| ++++.++.+.+|
T Consensus 428 ------------------------------s~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ------------------------------STSNAAITSLSWNPSGSGL-LSADKQKAVTLW 458 (459)
T ss_pred ------------------------------CCCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence 011 158999999999999 999999999988
No 72
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.5e-26 Score=219.09 Aligned_cols=231 Identities=17% Similarity=0.241 Sum_probs=191.9
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCe------EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
|+++||++||.||.|++|+..... +...++.|...++.++.... +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t 87 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT 87 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence 467899999999999999875322 35666777777766655544 667
Q ss_pred EEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEeCCCC--ceeeE--------e
Q 008058 89 LVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------F 155 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~-~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~--------~ 155 (579)
+++++.|-+|++|+...+. +. .....|.+.|.|+++ .++...+++||.|+.|.+||+.++ +.+.. +
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred eEEecCCceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 9999999999999998873 44 344779999999999 788889999999999999999977 22322 2
Q ss_pred e-cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 156 R-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 156 ~-~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
. ++..+|++++.++.|..+++|+ +.+++||.++.+.+..+.||...|..+..++||+.+++++ .||+|++||+...
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQ 245 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeecccc
Confidence 2 6777999999999999999998 8999999999999999999999999999999999999998 5999999999887
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+ |+.++..|...+.....+ |+=.++.+|+.||.|+.=|+.+.
T Consensus 246 r-----Cl~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 246 R-----CLATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred c-----eeeeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCc
Confidence 6 555665555555555555 77789999999999999988774
No 73
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=220.14 Aligned_cols=334 Identities=13% Similarity=0.116 Sum_probs=233.8
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE---EEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
++.|.|+|..++|.+...|..++|||++.-..+ ..+--|...+..+.--+. .-| +....| .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~--nv~-~~~~ac---l---------- 390 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC--NVH-SPTAAC---L---------- 390 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc--ccc-Cccccc---C----------
Confidence 468899999999999999999999999754322 112222222221111110 000 000000 0
Q ss_pred CCcEEEEEECCCeEEEEEccCC---eEEEE-e---------c-----------------------CCCCCCEEEEEEccC
Q 008058 85 GSSLLVLGTGGGDVLALAVSAG---QLKWR-L---------S-----------------------DCHPGGVSAISFATH 128 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~---~~~~~-~---------~-----------------------~~h~~~V~~l~~~~~ 128 (579)
....+.+|+.||+|++||+..+ ....+ + . -+...++.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 1456899999999999999752 11100 0 0 012346999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCE
Q 008058 129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAV 202 (579)
Q Consensus 129 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v 202 (579)
|++|++|..-|++++||+.+-+....+.+|...|.|+.++- ..++|++++ ..|+|||+.. ..++.++.+|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999999999999988889999999999999985 357888988 6899999964 45678899999999
Q ss_pred EEEEEecCC--CEEEEEecCCCeEEEEEcCCCccccceeEEeeecC---ceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058 203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 203 ~~l~~~~~~--~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 277 (579)
+++.|.-+| ..++++| .|+.|.+--.+..... .++.-.++ ...+.-+.. +|..+++++++.|..|+
T Consensus 551 TsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g---~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSG---RLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred eEEEEeecCCceEEEecc-CchhhheehhccccCc---eeccccccccccceEEEeee-----CCCcceEEEEecccceE
Confidence 999998877 6788888 6887654333221111 11211111 112222333 38999999999999999
Q ss_pred EEECCCceeecccCCceEEeeecc--cCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008058 278 IWYGQNIEELRNTKATKILSSSED--VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (579)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (579)
|||++++++.+.+++.+..-.... ...|.+. ++++...|..+-.+| -....+..++.||...|+.+
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~~D--------f~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCFVD--------FVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEEEE--------eccchhhhhhcCcchheeee
Confidence 999999999988876543311111 1244444 777777765333222 33456677888999999999
Q ss_pred eecCCcceeeccccceecccceee
Q 008058 356 NCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.|++|-++| +|.|.|+.|.+|.+
T Consensus 690 kF~nDCkHl-ISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 690 KFLNDCKHL-ISVSGDGCIFVWKL 712 (1080)
T ss_pred eecccchhh-eeecCCceEEEEEC
Confidence 999999999 99999999999987
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-25 Score=216.96 Aligned_cols=240 Identities=19% Similarity=0.254 Sum_probs=200.9
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .++.|+++|++||.|..+|.|.|||..+.+.+..+.. +....+.+++|.
T Consensus 218 ~~v--tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~--------- 269 (484)
T KOG0305|consen 218 ELV--TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN--------- 269 (484)
T ss_pred Cce--EEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence 456 4569999999999999999999999998887777653 224467788886
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
...+.+|+.+|.|..+|+...+.......+|...|..+.|++|++++++|+.|+.+.|||.....++..+..|...|.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 456899999999999999988766555678999999999999999999999999999999988889999999999999
Q ss_pred EEEEcc-CCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE-EecCCCeEEEEEcCCCccccc
Q 008058 164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p-~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+++|+| ...+||+|+ +.|++||..+++.+..+. ..+.|.++.|++..+-|++ .|..++.|.||+..+.+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-- 424 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-- 424 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence 999999 567888887 689999999999888775 5678999999998865554 4455778999999886533
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
..+..|...+-.+.++ |||..|++|+.|.++++|++-..
T Consensus 425 ---~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 ---AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence 3444444455566666 99999999999999999997654
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.9e-25 Score=227.63 Aligned_cols=299 Identities=16% Similarity=0.132 Sum_probs=218.7
Q ss_pred CcccceEEEEccCCCEEEEEe--CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 4 SNIRDILTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..| .++..+|||..+|||+ .||.++||+.+.--. .............+.. ..| ...++|+.|.+.
T Consensus 14 ~~I--fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~~~~l~k~l~~m---~~h-~~sv~CVR~S~d----- 80 (942)
T KOG0973|consen 14 KSI--FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEKNENLPKHLCTM---DDH-DGSVNCVRFSPD----- 80 (942)
T ss_pred eeE--EEEEecCCceeEecCCccccccceeeccccccc--hhhhhhcccchhheee---ccc-cCceeEEEECCC-----
Confidence 446 6779999999999999 899999998653110 0000000000001110 122 335667777664
Q ss_pred cccCCcEEEEEECCCeEEEEEccC----------C--------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSA----------G--------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~----------~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i 143 (579)
+.+||+|+.|+.|.||.... | +++ ..+.+|...|.+++|+|++.++++++.|++|.+
T Consensus 81 ----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 81 ----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred ----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 89999999999999999873 0 123 334689999999999999999999999999999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC------CCEEEEEEecCCCEEE
Q 008058 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFSDNGKYVL 215 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~l~ 215 (579)
||..+.+.+..+++|...|..+.|+|-|++|++-+ ++|++|++.+....+.+.++. .....+.|+|||.+|+
T Consensus 156 wn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred EccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999987 899999988776666665443 3477899999999998
Q ss_pred EEecCCC---eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc------------EEEEEEcCCeEEEEE
Q 008058 216 SSAVGER---YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISETGVCYIWY 280 (579)
Q Consensus 216 s~s~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~s~~~dg~i~iwd 280 (579)
+.-.-.+ ++.|.+-.+.+ .-..+-.|...+.++.|++..+..... .+|+|+.|++|.||.
T Consensus 236 s~nA~n~~~~~~~IieR~tWk-----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWK-----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred chhhccCCcceeEEEecCCce-----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 8653332 56676654443 223344555588899998654432222 678889999999998
Q ss_pred CCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCC
Q 008058 281 GQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d 360 (579)
....+++. .+.. .....|..++|+||
T Consensus 311 T~~~RPl~---------------------------vi~~---------------------------lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 311 TALPRPLF---------------------------VIHN---------------------------LFNKSIVDMSWSPD 336 (942)
T ss_pred cCCCCchh---------------------------hhhh---------------------------hhcCceeeeeEcCC
Confidence 64433322 1111 11236899999999
Q ss_pred cceeeccccceecccceeee
Q 008058 361 GVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 361 g~~l~~s~s~d~~~~~w~~~ 380 (579)
|..| +.+|.|+++.+-.+.
T Consensus 337 G~~L-facS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 337 GFSL-FACSLDGTVALIHFE 355 (942)
T ss_pred CCeE-EEEecCCeEEEEEcc
Confidence 9999 999999999998875
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=210.90 Aligned_cols=284 Identities=14% Similarity=0.178 Sum_probs=198.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+..| .++++.|.|..|++||.|.+|++||...... ...|+.... .....+..+.|.+.
T Consensus 167 tk~V--sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--------------~E~h~i~sl~ys~T----- 225 (641)
T KOG0772|consen 167 TKIV--SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--------------CETHQINSLQYSVT----- 225 (641)
T ss_pred ceEE--EEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--------------ccccccceeeecCC-----
Confidence 3456 5569999999999999999999999874331 122221111 01123344445443
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEE-----------ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-----------~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~ 149 (579)
+..|++.+..-..+++|-...+.... ..+||...++|.+|+|+.+ .|++++.||++++||+...
T Consensus 226 ----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 226 ----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred ----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 78889999999999999765443311 1368999999999999664 5999999999999998754
Q ss_pred c-eeeEeec-----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee---eEEeecCCC--CEEEEEEecCCCEEEE
Q 008058 150 S-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVLS 216 (579)
Q Consensus 150 ~-~~~~~~~-----~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~--~v~~l~~~~~~~~l~s 216 (579)
+ ..+.|+. ..-+++.++|+|||+.+|+|. |+|.+|+...... ...-..|.. .|++|.|+++|++|++
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 3 3333332 223789999999999999988 9999999864322 223356776 8999999999999999
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc------CCeEEEEECCCceeeccc
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~ 290 (579)
-| .|+++++||++..+..- .++.--.......-++|+ |+.+.|++|+. .|++.+||..+.+.+..+
T Consensus 382 Rg-~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 382 RG-FDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred cc-CCCceeeeeccccccch--hhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 98 69999999999876431 111111222333455666 99999999964 568999999998888766
Q ss_pred CCceEEeeecccCcccccccchhhhhccccceec
Q 008058 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (579)
.-....+... .+...++.|.+++.||.++
T Consensus 454 ~i~~aSvv~~-----~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 454 DISTASVVRC-----LWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred cCCCceEEEE-----eecchhhheeeecCCCceE
Confidence 5443332221 2444455888888876443
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=7.2e-25 Score=223.25 Aligned_cols=239 Identities=20% Similarity=0.278 Sum_probs=199.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+.| .+++|..-+.+|++|+.|.+++|||..+|.|...+.+|...+..+...
T Consensus 248 H~g~V--~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~------------------------- 300 (537)
T KOG0274|consen 248 HFGGV--WGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID------------------------- 300 (537)
T ss_pred CCCCc--eeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence 45678 455888778899999999999999999999999999877655433222
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+..+++|+.|.+|++|++.++.++..+ .+|.++|+++..+ +.++++|+.|++|++||+.++++++++.+|...
T Consensus 301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 445777899999999999999998665 5699999999996 789999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
|+++.+.+. ..+++|+ +.|++||+++. +++.++.+|..-+..+.+. +++|++++ .|++|++||...++..
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~~--- 446 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGECL--- 446 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCcee---
Confidence 999988765 8899998 89999999999 9999999999999777654 66888887 7999999999988744
Q ss_pred eEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..+.. +...+..+.+ ....+++++.||.+++||++++...+..
T Consensus 447 --~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 --RTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred --eeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence 44444 3233343433 2478899999999999999999887654
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=205.84 Aligned_cols=240 Identities=16% Similarity=0.298 Sum_probs=194.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..|| ..+.||||.+||++|+.|..+++||+.+|.+...+.. + .+...++++|.|.
T Consensus 269 ~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD------ 323 (519)
T KOG0293|consen 269 SQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD------ 323 (519)
T ss_pred cCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC------
Confidence 4577 7779999999999999999999999999998877642 2 3556778999987
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++|+.|+.+..||+..+..- ....-....|.+++..+||+++++.+.|..|++++..+......+. ...+|
T Consensus 324 ---g~~~V~Gs~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~i 398 (519)
T KOG0293|consen 324 ---GFRFVTGSPDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPI 398 (519)
T ss_pred ---CceeEecCCCCcEEEecCCcchhh-cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCce
Confidence 677999999999999999865432 2212233569999999999999999999999999987765554444 34689
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC--EEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
++++++.||+++++.- ..+++||++..+.++++.||... +..-+|-- +..++++|+ +|+.|+||+..+++.
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkl--- 474 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKL--- 474 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCce---
Confidence 9999999999988876 89999999999999999999865 22334543 445667665 899999999999874
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
+..+..+...+.+++|+| .+..++|++++||+|+||...
T Consensus 475 --l~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 475 --LAVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --eEeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCC
Confidence 467778889999999984 356789999999999999754
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=194.17 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=193.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++|.++ |. +|.|+|+||.|-+|+|||+.+......+-.|.+.++.+.|.+++.
T Consensus 42 H~~sitav--AV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S--------------------- 96 (362)
T KOG0294|consen 42 HAGSITAL--AV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS--------------------- 96 (362)
T ss_pred cccceeEE--Ee--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------------
Confidence 45778444 44 689999999999999999999988888888888888777776611
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.+.|++|+.||.|.+|+.....++..+ ++|.+.|+.++.+|.|+..++.+.|+.++.||+.+|+.-...+- ...
T Consensus 97 ----~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~ 170 (362)
T KOG0294|consen 97 ----KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK 170 (362)
T ss_pred ----hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence 236999999999999999999888666 78999999999999999999999999999999999986655442 233
Q ss_pred eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+.+.|+|.|.+++.+. +.|-+|.+.+......+.. ...+.++.|.. +.+|++++ +|+.|.+||.++.... .
T Consensus 171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~ 243 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----T 243 (362)
T ss_pred ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEec-CCceEEEeccCCCccc----e
Confidence 45699999999888888 9999999988776655542 24567777754 45778887 6999999999885433 2
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
....|...+-....+. .|++.+|++++.||.|++||++...
T Consensus 244 ~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccccc
Confidence 3345666666666565 3788999999999999999986553
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=3.6e-26 Score=197.26 Aligned_cols=242 Identities=15% Similarity=0.238 Sum_probs=204.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| +.+..+.|...-|+++.|-+-+|||.-+|..++.|. |..-+....|+.+
T Consensus 59 kgav--w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------ 111 (334)
T KOG0278|consen 59 KGAV--WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------ 111 (334)
T ss_pred Ccce--eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence 3567 666778888888999999999999999999998885 5555555555555
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.+.|++|+.+.-+++||++..+....-..+|++.|..+.|....+.|++++.|++||+||.+++..++++. .+.+|
T Consensus 112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V 187 (334)
T KOG0278|consen 112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV 187 (334)
T ss_pred ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence 77899999999999999998775544457899999999999989999999999999999999999999987 46689
Q ss_pred eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++.++++|+++.++. +.|..||..+...++.+. -...|.+...+|+...+++++ +|..++.||..++..+. .+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~---~~ 262 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIG---SY 262 (334)
T ss_pred cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCceee---ec
Confidence 9999999999999998 899999999988888776 456789999999998888777 89999999999998652 22
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
...+...+.|+.|+ |+|...++|++||+|++|....++.
T Consensus 263 -nkgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 -NKGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -ccCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence 23455567889998 9999999999999999998655543
No 81
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=8.1e-24 Score=215.48 Aligned_cols=204 Identities=14% Similarity=0.195 Sum_probs=162.8
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCe-------EEEEeccccccccccccccccccccccCccceEEe
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
++++| .+++|+| ++++|++|+.|++|+|||+.++. .+..+.+|.. .+.++.|
T Consensus 74 H~~~V--~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~------------------~V~~l~f 133 (493)
T PTZ00421 74 QEGPI--IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK------------------KVGIVSF 133 (493)
T ss_pred CCCCE--EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC------------------cEEEEEe
Confidence 35678 5569999 88999999999999999997653 2334443333 4556677
Q ss_pred eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008058 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 153 (579)
.|.. +.+|++|+.|+.|++||+.+++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+.
T Consensus 134 ~P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 134 HPSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred CcCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 6643 468999999999999999999887665 6799999999999999999999999999999999999999
Q ss_pred EeecCCCC-eeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 154 KFRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 154 ~~~~~~~~-v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~-~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
.+.+|.+. +..+.|.+++..+++++ +.|++||+++.. ++.....+ ...+....|+++++++++++..|+.|
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 99888764 45678899887777643 689999998754 34444333 34556678899999998887569999
Q ss_pred EEEEcCCCcc
Q 008058 225 ALWRTDGVKK 234 (579)
Q Consensus 225 ~vwd~~~~~~ 234 (579)
++||+.+++.
T Consensus 285 riwdl~~~~~ 294 (493)
T PTZ00421 285 RCFELMNERL 294 (493)
T ss_pred EEEEeeCCce
Confidence 9999998763
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.8e-26 Score=203.35 Aligned_cols=238 Identities=17% Similarity=0.207 Sum_probs=198.1
Q ss_pred CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec-cccccccccccccccccccccCccceEEeeecccc
Q 008058 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 1 ~~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
|...+| +|++||.|...+|+|+.||.|+||.+.+|.|+..|. .|...+.++.|+.+
T Consensus 261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--------------------- 317 (508)
T KOG0275|consen 261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--------------------- 317 (508)
T ss_pred ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---------------------
Confidence 556889 888999999999999999999999999999999887 66666666666665
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++++.|.++++.-+.+|+++..+ .||++-|+...|.+||.++++++.||+|++|+..+.+++.+|+...
T Consensus 318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 778999999999999999999998777 7899999999999999999999999999999999999999988644
Q ss_pred C--CeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 160 K--GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~--~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
. +|+++-.-|. -..++++. ++|++-++ .|+.+++|.. ..+...+...+|.|.++...+ +|+.++.|...+
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s 468 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS 468 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence 3 7888888774 45677776 89999987 4678888853 235566778999999999988 799999999999
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
++.. .++..+...+-..... |..+.|++=++||.+++|.
T Consensus 469 G~LE-----~tl~VhEkdvIGl~HH-----PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLE-----RTLPVHEKDVIGLTHH-----PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Ccee-----eeeecccccccccccC-----cccchhhhhcccchhhhcC
Confidence 8754 2333333333334444 8889999999999999994
No 83
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3e-24 Score=191.67 Aligned_cols=286 Identities=17% Similarity=0.198 Sum_probs=194.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
...| .+++||.||++||+++.|++|+||+++.... +.|..--.++ +.+ ..|.+.|.|.-
T Consensus 86 ~~~v--t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nv------e~d----hpT~V~FapDc----- 144 (420)
T KOG2096|consen 86 KKEV--TDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNV------EYD----HPTRVVFAPDC----- 144 (420)
T ss_pred CCce--eeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccc------cCC----CceEEEECCCc-----
Confidence 4668 5559999999999999999999999876321 1111100000 001 12233333321
Q ss_pred ccCCcEEEEEECCCeEEEEEccCC---eEE--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAG---QLK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~---~~~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 151 (579)
..+++.+-...++++|.+... ... ..+...|...|..+-...++.+|++++.|..|.+|+++ |+.
T Consensus 145 ---~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 145 ---KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred ---ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 334444555556999987532 111 12334577788888888889999999999999999998 999
Q ss_pred eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC---CC-----eeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS---DH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~---~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
+..+......-+..+.+|+|+++++++ -.|++|..- .| ..+..++||.+.|..++|+|+++.+++.+ .|
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kD 299 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KD 299 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cC
Confidence 999887777778889999999999998 789999863 22 33567899999999999999999999998 79
Q ss_pred CeEEEEEcCCCcccc--ceeEE----ee-ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce
Q 008058 222 RYIALWRTDGVKKQS--ASCVL----AM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (579)
Q Consensus 222 ~~i~vwd~~~~~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (579)
|++++||.+-.-... ..... .+ ......+ -+..+ |+|+.|+... ...+++|..++++.....
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~-gs~l~~~~se~g~~~~~~---- 368 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSF-GSDLKVFASEDGKDYPEL---- 368 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeec-CCceEEEEcccCccchhH----
Confidence 999999986432110 00000 01 1112222 23344 8888776554 357888876665432211
Q ss_pred EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008058 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (579)
+ ..|...|.+++|++||+++ +|++ |..+
T Consensus 369 ------------------------------------------------e--~~h~~~Is~is~~~~g~~~-atcG-dr~v 396 (420)
T KOG2096|consen 369 ------------------------------------------------E--DIHSTTISSISYSSDGKYI-ATCG-DRYV 396 (420)
T ss_pred ------------------------------------------------H--HhhcCceeeEEecCCCcEE-eeec-ceee
Confidence 1 1577789999999999999 9998 6555
Q ss_pred cce
Q 008058 375 RGR 377 (579)
Q Consensus 375 ~~w 377 (579)
++.
T Consensus 397 rv~ 399 (420)
T KOG2096|consen 397 RVI 399 (420)
T ss_pred eee
Confidence 554
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=178.18 Aligned_cols=243 Identities=15% Similarity=0.202 Sum_probs=190.0
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-----eeEeecCCCCeeEEEEcc----CCCEEEEEC-C--eE
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRASTKGISCMAVSS----DGKMLATAA-G--QL 181 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~p----~g~~l~~~~-g--~i 181 (579)
+.|.+.|+|.+|+|+|+.+++|+.|.+|++.-+....+ -..|.-|.+.|..++|-. .|.+|++++ | .|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 56899999999999999999999999999976543222 235777999999999964 356888887 5 67
Q ss_pred EEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-------cCceeeEeEE
Q 008058 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-------HPAVFMDCRC 254 (579)
Q Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 254 (579)
++-|...|+....+.||.+.|.++ ++-+|-.+++++ .|.+|++||++-.. ++.++. -....+..++
T Consensus 166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgs-qdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGS-QDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccC-CCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEE
Confidence 777888999999999999999876 233566667665 89999999998765 333332 1234566677
Q ss_pred ecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEe
Q 008058 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY 334 (579)
Q Consensus 255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (579)
.. |.|+.|++|-.|....+||++.++.++.+.|+...+.+.. |+|... ++++++.|..++.-| ..
T Consensus 239 vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-fsp~a~----yllt~syd~~ikltd-----lq 303 (350)
T KOG0641|consen 239 VD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-FSPGAH----YLLTCSYDMKIKLTD-----LQ 303 (350)
T ss_pred EC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-eCCCce----EEEEecccceEEEee-----cc
Confidence 76 9999999999999999999999999999999887777766 788777 899999986555433 34
Q ss_pred CCCCCcee-EEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 335 GLLLKPSF-QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 335 g~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|....... -.+..|...++.+.|.|..--+ +|.|.|++..+|-+
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~ 348 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL 348 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence 43333222 2344599899999999998877 89999999999965
No 85
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.3e-23 Score=212.89 Aligned_cols=179 Identities=9% Similarity=0.081 Sum_probs=142.5
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCc--------eeeEeecCCCCe
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI 162 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v 162 (579)
|+..+.|++|+......+..+ .+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 455678999998877666555 689999999999996 7899999999999999997642 344678899999
Q ss_pred eEEEEccCCCEE-EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 163 ~~l~~~p~g~~l-~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.+++|+|++..+ ++++ +.|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||+++++..
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i---- 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA---- 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE----
Confidence 999999998765 5665 899999999998877776 667899999999999998887 7999999999987643
Q ss_pred EEeeecCceee-----EeEEecCCcccCCCcEEEEEEcCC----eEEEEECCC
Q 008058 240 VLAMEHPAVFM-----DCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~ 283 (579)
..+..+.... ....|+ +++.+|++++.|+ +|+|||+++
T Consensus 203 -~tl~gH~g~~~s~~v~~~~fs-----~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 -SSFHIHDGGKNTKNIWIDGLG-----GDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred -EEEecccCCceeEEEEeeeEc-----CCCCEEEEEEcCCCCccEEEEEECCC
Confidence 2333332221 222233 7889999988774 799999875
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=202.62 Aligned_cols=261 Identities=16% Similarity=0.170 Sum_probs=209.2
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
..+++|+.||.|++||+.+.++...+ .+|.+.|.++++.. ..+++++.|.+|+.|-+. +.+++++.+ ...+..+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~~gId 154 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVYLGID 154 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeec-cccccccc
Confidence 56899999999999999999988766 68999999999976 678999999999999975 457777764 34677788
Q ss_pred EccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 167 ~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
-+..+..+++++..|.|||.+-..++.++......|.++.|+|....++.++..|+.|.+||++...... +.+..+.
T Consensus 155 h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mR-- 231 (433)
T KOG0268|consen 155 HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMR-- 231 (433)
T ss_pred cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeecc--
Confidence 8878889999999999999999899999998889999999999877665555479999999999987652 2223322
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce-eecccCCceEEeeecccCcccccccchhhhhccccceecC
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
...++|+ |++..++++++|..++.||++... .+..++.+...+...+ |+|.|+ .+++|+.|..+++
T Consensus 232 ---TN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~----EfvsgsyDksIRI 298 (433)
T KOG0268|consen 232 ---TNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQ----EFVSGSYDKSIRI 298 (433)
T ss_pred ---ccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cCCCcc----hhccccccceEEE
Confidence 2456676 888889999999999999988764 4566677777777776 899999 8999999988777
Q ss_pred CceEEEEEeCCCCCceeEEEecCC---CCcEEEeecCCcceeeccccceecccceee
Q 008058 326 ASVHTFVAYGLLLKPSFQKILVNS---GEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+.. ..... .-..|+ ..|.++.||.|.+|+ +|||.|+.+++|..
T Consensus 299 f~~-----~~~~S-----RdiYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 299 FPV-----NHGHS-----RDIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA 344 (433)
T ss_pred eec-----CCCcc-----hhhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeec
Confidence 431 11000 001232 358999999999999 99999999999986
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.5e-25 Score=221.04 Aligned_cols=241 Identities=16% Similarity=0.223 Sum_probs=181.3
Q ss_pred EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------------------------C---------
Q 008058 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------------------------------G--------- 149 (579)
Q Consensus 111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--------------------------------~--------- 149 (579)
.+..+|.+.|+++.|++||+|||+||.||.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 33348999999999999999999999999999998754 0
Q ss_pred -------------------ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe
Q 008058 150 -------------------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (579)
Q Consensus 150 -------------------~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 208 (579)
++++.|++|.+.|..+.|+.+ .+|++++ .+|++|++...++++.|. |...|+|++|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 123445689999999999965 5777777 999999999999999997 99999999999
Q ss_pred c-CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 209 D-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 209 ~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
| |.+||++|+ -|+.|+||++...+.. ....-...++.++|. |||++.++|+.+|.+++|+....+..
T Consensus 419 PvDDryFiSGS-LD~KvRiWsI~d~~Vv------~W~Dl~~lITAvcy~-----PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 419 PVDDRYFISGS-LDGKVRLWSISDKKVV------DWNDLRDLITAVCYS-----PDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred ccCCCcEeecc-cccceEEeecCcCeeE------eehhhhhhheeEEec-----cCCceEEEEEeccEEEEEEccCCeEE
Confidence 9 677999987 6999999999886522 222334778899998 99999999999999999998776544
Q ss_pred cccC---------CceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC--CcEEEe
Q 008058 288 RNTK---------ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG--EDINLN 356 (579)
Q Consensus 288 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~ 356 (579)
.... ..+ .++....+..+.. .+++.+.|..|+++|+ .......+++|+.. ..+.-.
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~----~vLVTSnDSrIRI~d~--------~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPD----EVLVTSNDSRIRIYDG--------RDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCC----eEEEecCCCceEEEec--------cchhhhhhhcccccCCcceeee
Confidence 2211 111 2333221222211 4666666666666553 11223335555332 357778
Q ss_pred ecCCcceeeccccceecccceee
Q 008058 357 CSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 357 ~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|+.||++| +++|+|..+++|+.
T Consensus 554 fs~Dgk~I-Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 554 FSSDGKHI-VSASEDSWVYIWKN 575 (712)
T ss_pred EccCCCEE-EEeecCceEEEEeC
Confidence 99999999 99999999999997
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.8e-24 Score=220.41 Aligned_cols=244 Identities=18% Similarity=0.184 Sum_probs=191.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC------------------eEEEEecccccccccccccccccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------------------QVQTEFADIASTETTSLYGNRLEREH 63 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (579)
+.++| -|+.|||||+|||+||.|+.|.||+.... ++...+.+|.
T Consensus 68 h~~sv--~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---------------- 129 (942)
T KOG0973|consen 68 HDGSV--NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---------------- 129 (942)
T ss_pred ccCce--eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC----------------
Confidence 35778 56699999999999999999999997731 1233333333
Q ss_pred ccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i 143 (579)
..+..++|.|. +.++++++.|+.|.+||..+.+.+..+ .+|.+.|.++.|.|-|+||++-+.|++|++
T Consensus 130 --~DV~Dv~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 130 --SDVLDVNWSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKV 197 (942)
T ss_pred --CccceeccCCC---------ccEEEEecccceEEEEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEE
Confidence 35556666663 889999999999999999999777555 789999999999999999999999999999
Q ss_pred EeCCCCceeeEeecCC------CCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC-
Q 008058 144 IDPLTGSLLGKFRAST------KGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN- 210 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~------~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~- 210 (579)
|++.+....+.+..+. ..+..+.|+|||++|++.. ..+.|.+-.+.+.-..|-||..++.+++|+|.
T Consensus 198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 9987776766665433 2678999999999999976 48999998888888899999999999999972
Q ss_pred -----C---------CE-EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 211 -----G---------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 211 -----~---------~~-l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
. .| +++.|+.|++|.||.....+.. .....-....+.-+.|+ |||..|++++.||+
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl----~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DGt 348 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL----FVIHNLFNKSIVDMSWS-----PDGFSLFACSLDGT 348 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch----hhhhhhhcCceeeeeEc-----CCCCeEEEEecCCe
Confidence 1 11 5555568999999998665533 11112223344456666 99999999999999
Q ss_pred EEEEECCCc
Q 008058 276 CYIWYGQNI 284 (579)
Q Consensus 276 i~iwd~~~~ 284 (579)
|.++.++..
T Consensus 349 V~~i~Fee~ 357 (942)
T KOG0973|consen 349 VALIHFEEK 357 (942)
T ss_pred EEEEEcchH
Confidence 999987654
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=176.75 Aligned_cols=245 Identities=20% Similarity=0.283 Sum_probs=191.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccccccccccccccccccccccCccceEEeeecc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
.+.| .|.+|||+|+++|+|++|.+|++.......+ -.+|..|.+.+..+.|..+ .
T Consensus 89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~ 148 (350)
T KOG0641|consen 89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P 148 (350)
T ss_pred CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence 4678 7779999999999999999999975543322 2345556666655555433 1
Q ss_pred cccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
.. ++.+|++++ .|..|++-|..+|+....+ .+|++-|.++. +-+|-.+++|+.|.+|++||++-..++.++.
T Consensus 149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 11 144555543 4556888888999887665 68999998874 3367889999999999999999888887754
Q ss_pred c--C-----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 157 A--S-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 157 ~--~-----~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
. | ...|.+++..|.|++|++|. ....+||++.++.++.|..|...|.++.|+|...|+++++ .|..|++-
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt 300 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT 300 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence 2 1 24799999999999999998 7899999999999999999999999999999999999998 79999999
Q ss_pred EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
|++..-......+...+|.+..+.+-+. |..--+++.+.|.++.+|-+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEecc
Confidence 9987543323344556688888887766 67778889999999999965
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-24 Score=186.94 Aligned_cols=275 Identities=13% Similarity=0.121 Sum_probs=213.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+-||+.+ .|+.+|.+|.+|+.|.+..||-..+|+.+.++.+|.+.+.++....+
T Consensus 10 ERplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~------------------------ 63 (327)
T KOG0643|consen 10 ERPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD------------------------ 63 (327)
T ss_pred ccccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC------------------------
Confidence 4678666 99999999999999999999999899999999988877664433322
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCC-------CCc
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPL-------TGS 150 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----dg~v~iwd~~-------~~~ 150 (579)
...+++|+.|.++++||+.+|+++.... -..+|..+.|+++|++++.+.. .+.|.++|++ ..+
T Consensus 64 ---s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 64 ---SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ---cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 6679999999999999999999988774 4578999999999998777643 4679999998 445
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
+...+..+...++.+-|.|-+++|++|. |.|..||+++++ .+..-..|...|+.|.++||..++++++ .|.+-++|
T Consensus 139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~ 217 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLV 217 (327)
T ss_pred ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCccceee
Confidence 6778888889999999999999999998 999999999985 4556678999999999999999999997 79999999
Q ss_pred EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CC-------------eEEEEECCCceeecccCCc
Q 008058 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG-------------VCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg-------------~i~iwd~~~~~~~~~~~~~ 293 (579)
|..+-+.+ .+. .....+++++++ |.-.+++.|+. +- ..++|++-..+.+...+++
T Consensus 218 D~~tl~v~-----Kty-~te~PvN~aais-----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 218 DVRTLEVL-----KTY-TTERPVNTAAIS-----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred eccceeeE-----EEe-eecccccceecc-----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 99987644 222 233455666666 65555555543 21 1223333333445555555
Q ss_pred eEEeeecccCcccccccchhhhhccccceecC
Q 008058 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
-..+.+.+ +.|+++ .-.+|..||-+++
T Consensus 287 FGPINsvA-fhPdGk----sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 287 FGPINSVA-FHPDGK----SYSSGGEDGYVRL 313 (327)
T ss_pred ccCcceeE-ECCCCc----ccccCCCCceEEE
Confidence 55555555 788888 7788888875554
No 91
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=7.4e-24 Score=193.62 Aligned_cols=239 Identities=16% Similarity=0.218 Sum_probs=186.6
Q ss_pred CCCcccceEEEEcc-C--CCEEEEEeCCCcEEEEECCCCeEEE----EeccccccccccccccccccccccCccceEEee
Q 008058 2 GSSNIRDILTSFSP-A--LDYFAICSGDARIKIWDTLKGQVQT----EFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-d--g~~las~s~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
+++||+++ ++-. | ...|++++.|.++++|.++.++... .-++|...+.++....+
T Consensus 143 ht~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s---------------- 204 (423)
T KOG0313|consen 143 HTGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS---------------- 204 (423)
T ss_pred CCcceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----------------
Confidence 35677443 5432 2 2369999999999999988776432 22245544444333333
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCC------------------------eEEEEecCCCCCCEEEEEEccCCC
Q 008058 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG------------------------QLKWRLSDCHPGGVSAISFATHGS 130 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~~~~~ 130 (579)
+..+++|+.|..|.+|+..+. +.....+.||..+|.++.|++ ..
T Consensus 205 -----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~ 272 (423)
T KOG0313|consen 205 -----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT 272 (423)
T ss_pred -----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence 888999999999999993210 011233579999999999998 66
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCCEEEE
Q 008058 131 CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRFM 205 (579)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~---~~~~~~~h~~~v~~l 205 (579)
.+++++.|.+|+.||+.++..+.++.+ +..++|++.+|..++|++|+ ..|++||.+++. ...+|.+|.+.|.++
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV 351 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence 899999999999999999999888775 45789999999999999998 899999999763 356789999999999
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
.|+|...+.+.+++.|+++++||+++.+. .++.+..+...+-++.|. ++..|++|+.|.+|+|+..
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~----plydI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA----PLYDIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCC----cceeeccCCceEEEEecc------CCceEEeccCcceEEEecc
Confidence 99998887766667899999999998763 346666666666677774 7889999999999999964
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.8e-24 Score=188.83 Aligned_cols=277 Identities=12% Similarity=0.191 Sum_probs=217.2
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+-......+.+++.|.+.+||.+++|+|+..|.+|.+.++++.|++. +.++++
T Consensus 155 aa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~lT 207 (481)
T KOG0300|consen 155 AADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLLT 207 (481)
T ss_pred hhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEEE
Confidence 44444457889999999999999999999999999999998888776 788899
Q ss_pred EECCCeEEEEEcc------C------------------------------C---e-EEEEecCCCCCCEEEEEEccCCCE
Q 008058 92 GTGGGDVLALAVS------A------------------------------G---Q-LKWRLSDCHPGGVSAISFATHGSC 131 (579)
Q Consensus 92 ~~~~g~i~iwd~~------~------------------------------~---~-~~~~~~~~h~~~V~~l~~~~~~~~ 131 (579)
++.|++-.||... . + . .+.+ +.+|.+.|.+..|-..|+.
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcce
Confidence 9999998888621 1 0 0 0112 3579999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEe
Q 008058 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFS 208 (579)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~ 208 (579)
+++++.|.+..+||+++|..+..+.+|....+.++-+|..+++++++ .+.++||.+.. ..+..|+||...|+++.|.
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 99999999999999999999999999999999999999999999998 79999999853 4578899999999999999
Q ss_pred cCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 209 ~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
.+.+ +++++ +|++|++||+++.... +.++.... .+.-+..+ ..+..|+.-.++..|++||+...+.-+
T Consensus 367 ~dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS-~~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 367 TDDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDS-PANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred cCCc-eeecC-CCceEEEeeeccccCc----ceeeecCC-ccceeEee-----cCCceEEeccCCceEEEEecCCCcccc
Confidence 8764 67776 7999999999987532 22332222 22333443 455677777788899999986443321
Q ss_pred ccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc--ceeec
Q 008058 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLPM 366 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~~ 366 (579)
.+. . .-.||..-|.|++|..+- +-| +
T Consensus 435 -lPr-------------t-------------------------------------sRqgHrRMV~c~AW~eehp~cnL-f 462 (481)
T KOG0300|consen 435 -LPR-------------T-------------------------------------SRQGHRRMVTCCAWLEEHPACNL-F 462 (481)
T ss_pred -CCc-------------c-------------------------------------cccccceeeeeeeccccCccccc-c
Confidence 110 0 112677788999998654 456 8
Q ss_pred cccceecccceeee
Q 008058 367 SQSLLKSKRGRYVQ 380 (579)
Q Consensus 367 s~s~d~~~~~w~~~ 380 (579)
+++.|..+.-|++.
T Consensus 463 tcGFDR~v~gW~in 476 (481)
T KOG0300|consen 463 TCGFDRMVAGWKIN 476 (481)
T ss_pred cccccceeeeeEec
Confidence 99999999999883
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=3.1e-24 Score=198.07 Aligned_cols=234 Identities=16% Similarity=0.203 Sum_probs=196.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++|. .+.|.+++.++++++.|+.+++|++...+...++.+|...+....|...
T Consensus 219 ~g~it--~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~------------------------ 272 (459)
T KOG0288|consen 219 LGNIT--SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS------------------------ 272 (459)
T ss_pred CCCcc--eeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc------------------------
Confidence 36784 4499999999999999999999999999999999988887776655443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
...+++|+.|.+|++||+....+..+++.+ +.+.+++.+ ...+++|-.|++|++||.++..+......+. .|
T Consensus 273 ---~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~v 344 (459)
T KOG0288|consen 273 ---HSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RV 344 (459)
T ss_pred ---ccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ce
Confidence 334899999999999999999988777643 556777765 4568899999999999999999999988765 89
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
+++..+++|..+.+++ .++.+.|+++.+....+... ...++.+.|+|++.|+++|+ .||.|+||++.+++..
T Consensus 345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE- 422 (459)
T KOG0288|consen 345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE- 422 (459)
T ss_pred eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE-
Confidence 9999999999999998 89999999998877776432 23488999999999999988 6999999999999855
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 279 (579)
.+....+....+.++.|+ |.|..+++++.++.+.+|
T Consensus 423 --~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 --KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence 344444444467888888 999999999999999999
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8e-24 Score=198.10 Aligned_cols=298 Identities=16% Similarity=0.157 Sum_probs=217.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
-+| ++|+++||+.+.++++.||+|.=|++.+|+.... ++.. .+... |
T Consensus 143 ~s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~---------~------------------- 190 (479)
T KOG0299|consen 143 LSV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKS---------H------------------- 190 (479)
T ss_pred Ccc--eEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhh---------c-------------------
Confidence 456 7889999999999999999999999999886522 2110 00000 0
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+........+|...+.+++.++||+||++|+.|..|.|||.++.+.++.|.+|.+.|
T Consensus 191 -----------------------~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V 247 (479)
T KOG0299|consen 191 -----------------------GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAV 247 (479)
T ss_pred -----------------------cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccce
Confidence 000000003799999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|-.....+++++ +.|++|+++....+.++.||.+.|.+|....-++.+-+++ .|+++++|++.....
T Consensus 248 ~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesq------ 320 (479)
T KOG0299|consen 248 SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQ------ 320 (479)
T ss_pred eeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEeccccce------
Confidence 9999987777777776 8999999999989999999999999998887777665555 799999999955432
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE------------eeecccCccccc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL------------SSSEDVNSKSQK 308 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 308 (579)
..+..+...+.|++|- +..++++|+.+|.|.+|++...+++...+-.... +.+.. ..+...
T Consensus 321 lifrg~~~sidcv~~I------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sd 393 (479)
T KOG0299|consen 321 LIFRGGEGSIDCVAFI------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSD 393 (479)
T ss_pred eeeeCCCCCeeeEEEe------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCc
Confidence 2334556678888885 7788999999999999999888877543321111 11111 122222
Q ss_pred ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+++|+.+|.+++|. +..|......+..+. -.+.|++++|+++|+++.+..+.....=-|-.
T Consensus 394 ----L~asGS~~G~vrLW~----i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 394 ----LLASGSWSGCVRLWK----IEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ----eEEecCCCCceEEEE----ecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 777888888766643 222322233444444 34589999999999977455565555545543
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-23 Score=194.35 Aligned_cols=281 Identities=17% Similarity=0.161 Sum_probs=209.5
Q ss_pred EEeCC-CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC-eEE
Q 008058 22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG-DVL 99 (579)
Q Consensus 22 s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-~i~ 99 (579)
+++.| .++.+||+.+|.....|++..... +|.-.. .++.+++++.... .|.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~sl~~----------------l~~~yllsaq~~rp~l~ 64 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AASLTA----------------LNNEYLLSAQLKRPLLH 64 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCccccc-----------chhhhh----------------hchhheeeecccCcccc
Confidence 34445 459999999999998887531100 000000 0134555555544 499
Q ss_pred EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-
Q 008058 100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178 (579)
Q Consensus 100 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~- 178 (579)
+|.+.......+. .--.++|.++.-+|+|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+.||.++++|+
T Consensus 65 vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 65 VWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 9998876554322 22457899999999999999998999999999999999999999999999999999999999999
Q ss_pred -CeEEEEECC---------CCeeeEEeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 179 -g~i~vwd~~---------~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|.|.+|++. +-+++..|..|.-+|+.+...+. ..++++++ .|+++++||+..+... .+.. .
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~-f 216 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTIT-F 216 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEe-c
Confidence 999999874 34678899999999999988764 45788887 7999999999998644 3332 3
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCC
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
+..+.++..+ |.+..+++|+.+|.|.+.++....... ..+. .+
T Consensus 217 p~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~------~~v~--------~k------------------ 259 (476)
T KOG0646|consen 217 PSSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQS------AGVN--------QK------------------ 259 (476)
T ss_pred CCcceeEEEc-----ccccEEEecCCcceEEeeehhcCCccc------cccc--------cc------------------
Confidence 3445667776 999999999999999998864432100 0000 00
Q ss_pred ceEEEEEeCCCCCceeEEEecCCC--CcEEEeecCCcceeeccccceecccceeeeec
Q 008058 327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
.+..-...+..+.||.+ +|+|++.+-||.+| +||++|+.+.+|++..+
T Consensus 260 -------~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 260 -------GRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYSK 309 (476)
T ss_pred -------ccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecchH
Confidence 00111233446778888 89999999999999 99999999999999643
No 96
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.9e-21 Score=183.97 Aligned_cols=345 Identities=11% Similarity=0.075 Sum_probs=243.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccccccc---ccCccceEEeeeccccccc---
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH---LSVDYTCMKWLSVDRKKKR--- 82 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~w~~~~~~~~~--- 82 (579)
+|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.++....+ |. -..+...+.|...-.+.+.
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceEEeccccccccccccC
Confidence 8889999997 679999999999999888877776688888877666544 22 1334456677632111000
Q ss_pred ----------ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008058 83 ----------KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 83 ----------~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 152 (579)
..+..-|++|+..+.|.-=+++.+-.+.. .+|....+.++.+|+...+++++.|+.+++|+ ..+.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 00122277888888877777776655422 47999999999999999999999999999999 55655
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
.+.. -..++.|+.|+|.| .++.|. |...+.|.++...+..-.. ..+++.++|+|+|.+|+.++ .|+.|++|.+.
T Consensus 402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs 477 (626)
T KOG2106|consen 402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVS 477 (626)
T ss_pred EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEec-CCCeEEEEEEC
Confidence 5544 35688999999999 888887 9999999999666554444 88999999999999999987 79999999998
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee-ecc---cC-cc
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-SED---VN-SK 305 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~---~~-~~ 305 (579)
..... ....-.++...+..+.|+ +|++++.+-+.|-.|..|.......+...+..+.... +.. .+ ..
T Consensus 478 ~~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s 549 (626)
T KOG2106|consen 478 ANGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGS 549 (626)
T ss_pred CCCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEeccc
Confidence 76543 222333444778888888 9999999999999999995444444433222221110 000 00 11
Q ss_pred ccc--------ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058 306 SQK--------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 306 ~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
++. .....+++|...|.++++.. -.......+.+..+|...|.+++|+-+..++ ++.+.|.++..|
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y-----Pc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~qW 623 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSY-----PCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQW 623 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEcc-----ccCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEEE
Confidence 111 01124444444444433221 2244556777889999999999999888777 565699999999
Q ss_pred ee
Q 008058 378 YV 379 (579)
Q Consensus 378 ~~ 379 (579)
.+
T Consensus 624 ~l 625 (626)
T KOG2106|consen 624 RL 625 (626)
T ss_pred Ee
Confidence 76
No 97
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=175.66 Aligned_cols=234 Identities=15% Similarity=0.249 Sum_probs=193.9
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.|.++ +|+| +.+.|++++.|.+|++||.+.+++...+..... .-.+.|.|.
T Consensus 65 ~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-------------------ni~i~wsp~------ 117 (313)
T KOG1407|consen 65 DSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-------------------NINITWSPD------ 117 (313)
T ss_pred cchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-------------------ceEEEEcCC------
Confidence 456555 7777 557999999999999999999999887753222 123555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.+++++..|..|...|.++.+..... .....+..++|+-++..|+.....|+|.|.....-++++.+++|....
T Consensus 118 ---g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 118 ---GEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred ---CCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 788999999999999999998876544 345678899999888888888888999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.||.|+|+|+++|+|+ ..+.+||++.--+++.+..+.-+|..+.|+.||++|++++ +|..|-|=++++|...
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~----- 266 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRV----- 266 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeE-----
Confidence 9999999999999999 7999999999989999999999999999999999999987 8999999999998743
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcC---------CeEEEEEC
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---------GVCYIWYG 281 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~ 281 (579)
..+.+.+.... ++|. |....||-++.| |++++|-+
T Consensus 267 ~eI~~~~~t~t-VAWH-----Pk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 267 WEIPCEGPTFT-VAWH-----PKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred EEeeccCCcee-EEec-----CCCceeeEEecCCCCccccccceeEEecC
Confidence 55656555544 4554 888888887664 46666644
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=3.1e-23 Score=203.25 Aligned_cols=269 Identities=19% Similarity=0.279 Sum_probs=201.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE--EEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.||.+ ++.+ +..++++|.||++++|+-..++.+ ..+.++.+-+. ..+++...+
T Consensus 14 ~~DVr~v--~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~-----------------~~i~y~e~~--- 70 (745)
T KOG0301|consen 14 KSDVRAV--AVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIA-----------------NSICYAESD--- 70 (745)
T ss_pred ccchhee--EecC-CeEEeecCCCCceeeeeccCcccccceecccCcceee-----------------ccceecccc---
Confidence 4566666 5554 448999999999999997655543 23433332221 113333221
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..+++|+.|..|.+|..........+ .+|...|+++....++. +++||.|.++++|-. +++...+.+|..
T Consensus 71 -----~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 71 -----KGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred -----CcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 556999999999999999999988655 78999999999887776 999999999999985 677778999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
.|.+++.-|++ .+++|+ .+|++|.- ++.+++|.+|..-|+++++-+++. |++++ .||.|+.|++...
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge------ 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE------ 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc------
Confidence 99999999988 666776 89999975 788999999999999999998864 67887 7999999999543
Q ss_pred eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcc
Q 008058 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (579)
++..+..+...+.++... +++..++++++|++++||+.....+.-.++......+ ..... .-|++|+
T Consensus 211 ~l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa--~~L~N------gDIvvg~ 277 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSA--KVLLN------GDIVVGG 277 (745)
T ss_pred eeeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecCceEEEEecCccceEEE--EEeeC------CCEEEec
Confidence 445666666666666644 7889999999999999999874444444443222211 11111 2688889
Q ss_pred ccceecCCc
Q 008058 319 LQDIVKPAS 327 (579)
Q Consensus 319 ~~~~~~~~~ 327 (579)
.||.+|++.
T Consensus 278 SDG~VrVfT 286 (745)
T KOG0301|consen 278 SDGRVRVFT 286 (745)
T ss_pred cCceEEEEE
Confidence 988877654
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=180.43 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=178.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+.++++|+.|-+|+|||+.+......+. .|.+.|+++.|.++-. .|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 7789999999999999999988876664 5999999999998765 899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
.++++|.|++.++.+ +.+++||+-+|+.-..+. -....+.+.|+|.|.+++.++ -+.|-+|.+...... .
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence 999999999888766 899999999987654443 122334599999999888876 456999999876532 1
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
.+..+ ..+.++.| -++..+++|.+|+.|.+||.++...+.
T Consensus 204 ~i~~~-~r~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~--------------------------------- 243 (362)
T KOG0294|consen 204 EIENP-KRILCATF------LDGSELLVGGDNEWISLKDTDSDTPLT--------------------------------- 243 (362)
T ss_pred hhhcc-ccceeeee------cCCceEEEecCCceEEEeccCCCccce---------------------------------
Confidence 22223 33445555 478999999999999999975532211
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe--ecCCcceeeccccceecccceeee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~--~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.+|+..|-.+. -.|++.+| +|+|.||.|++|++.
T Consensus 244 ----------------------~~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 244 ----------------------EFLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID 281 (362)
T ss_pred ----------------------eeecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence 3446777777776 34778899 999999999999984
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=208.34 Aligned_cols=236 Identities=14% Similarity=0.245 Sum_probs=182.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+..++-+.++.++.. .++||.+.... +...++. .......+..+.|.... .+
T Consensus 46 s~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~---------------kqn~~~S~~DVkW~~~~--------~N 101 (839)
T KOG0269|consen 46 SVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT---------------KQNKFYSAADVKWGQLY--------SN 101 (839)
T ss_pred eecCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc---------------ccceeeehhhcccccch--------hh
Confidence 667777778877753 67777665332 2222211 11223345567887544 78
Q ss_pred EEEEEECCCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 88 LLVLGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+|++++.+|.|.+||+.. ++.+ ..+.+|...++++.|++. ..+|++|+.||+|++||++..+...++.+....|.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hheeecCCCcEEEEecCccccchhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 999999999999999987 3333 345789999999999984 56799999999999999999999999998888999
Q ss_pred EEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 164 CMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 164 ~l~~~p-~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.+.|+| .+..++++. |.+++||++.. ++..++..|.++|.++.|+|++.+|++|| .|+.|+||++.+.+...
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~--- 256 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP--- 256 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc---
Confidence 999999 567888887 99999999964 56778899999999999999999999998 79999999999876542
Q ss_pred EEeeecCceeeEeEEecCCcccCCC-cEEEEEEc--CCeEEEEECC
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ 282 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~--dg~i~iwd~~ 282 (579)
..++ +....+..+.|. |+. .+|++++. |-.|+|||+.
T Consensus 257 ~~tI-nTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 257 KHTI-NTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred eeEE-eecceeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence 2222 345566777787 554 45666654 7799999974
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=5e-23 Score=195.03 Aligned_cols=291 Identities=13% Similarity=0.144 Sum_probs=206.7
Q ss_pred cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc
Q 008058 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~ 140 (579)
...++.+...+. |..+++|+-|.+|++||+..-. ....+.......|+++.|++.|..|++.+....
T Consensus 167 tk~Vsal~~Dp~---------GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 167 TKIVSALAVDPS---------GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEEEEeeecCC---------CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 444555555554 8889999999999999997532 233444455568999999999999999999999
Q ss_pred EEEEeCCCCceeeE-------------eecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee-eEEee-----cC
Q 008058 141 VCEIDPLTGSLLGK-------------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GH 198 (579)
Q Consensus 141 v~iwd~~~~~~~~~-------------~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~-~~~~~-----~h 198 (579)
.+++|- .|..+.. -++|...++|.+|+|+.+ .+++++ |++++||+...+. ...|+ +.
T Consensus 238 akl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 238 AKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999994 4543332 246888999999999654 555665 9999999986432 33332 33
Q ss_pred CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 199 ~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
.-+++.++|+|+|+.+++++ .||.|.+|+..........++.........++++.|+ ++|++|++-+.|+++++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceee
Confidence 45789999999999988887 7999999998766544333333333445578999998 99999999999999999
Q ss_pred EECCCceee-cccCCceEE-eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe
Q 008058 279 WYGQNIEEL-RNTKATKIL-SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356 (579)
Q Consensus 279 wd~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~ 356 (579)
||++..+.- ....+.... -.....|+|+.+ .|++|...-.-.. .| .+..+....+....++-.....|..+.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k----li~TGtS~~~~~~-~g-~L~f~d~~t~d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK----LILTGTSAPNGMT-AG-TLFFFDRMTLDTVYKIDISTASVVRCL 464 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCce----EEEecccccCCCC-Cc-eEEEEeccceeeEEEecCCCceEEEEe
Confidence 999877542 221111111 111224788888 8888876421111 23 333444445555666667777899999
Q ss_pred ecCCcceeeccccceeccccee
Q 008058 357 CSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 357 ~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
|.|.=+.+ +.|+.||++++.-
T Consensus 465 WhpkLNQi-~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 465 WHPKLNQI-FAGSGDGTAHVYY 485 (641)
T ss_pred ecchhhhe-eeecCCCceEEEE
Confidence 99998888 6666799988874
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=8.2e-23 Score=191.46 Aligned_cols=255 Identities=15% Similarity=0.240 Sum_probs=186.8
Q ss_pred CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc-ccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.|+.+ .+-|.. ..+|+++..+.|.|||..+..-.....+ .+.|++ ..||... ...+.|.+..
T Consensus 124 ~gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~e-g~glsWn~~~--- 189 (422)
T KOG0264|consen 124 DGEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEKE-GYGLSWNRQQ--- 189 (422)
T ss_pred Cccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeeccc-cccccccccc---
Confidence 3556555 777755 5777888899999999864332211110 111221 2355442 4457887765
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC--CCce
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSL 151 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~--~~~~ 151 (579)
...+++++.++.|.+||+..... ....+.+|...|.+++|++ +...|.+++.|+.+.+||++ +.++
T Consensus 190 -----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 190 -----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred -----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 66799999999999999975432 2345679999999999999 45568899999999999999 5566
Q ss_pred eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEE
Q 008058 152 LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIAL 226 (579)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~v 226 (579)
....++|.+.|+|++|+| ++.+||+|+ ++|.+||+++. +++.++.+|...|.++.|+|... .|+++| .|+.+.+
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~v 343 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNV 343 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEE
Confidence 677889999999999999 566777887 99999999974 56889999999999999999765 455555 8999999
Q ss_pred EEcCCCccc---------cceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECC
Q 008058 227 WRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 227 wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 282 (579)
||+..-... ..+..+....+...+.-..|+ |+. -.|+++++|+.++||...
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence 999653221 123445555555555555555 554 557788999999999864
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=188.93 Aligned_cols=237 Identities=17% Similarity=0.196 Sum_probs=197.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+.|+|+...+++++.|..|+||......+......|..++......+. +.+
T Consensus 265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t---------------------------geY 317 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT---------------------------GEY 317 (506)
T ss_pred EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC---------------------------CcE
Confidence 56699999999999999999999999888777777888877776665555 899
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
++.++.+|...+.|++++..+...... ..-.+++.+|+|||-.|.+|..||.|++||+.++..+..|.+|.++|..++|
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence 999999999999999999987555332 2345899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+.+|-+|+++. +.|++||++..+...++.-. ..++.++.|.+.|++|+++| .|=+|++++-.+.. +.++..+.
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~~~~~~~ 473 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WTEIKELA 473 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ceeeehhh
Confidence 99999999998 78999999988887777533 24699999999999999987 46556665533332 33455555
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
.+....+++.|. ...+++++++.|..++++.+
T Consensus 474 ~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeec-----ccceEEeeccchhheEEeec
Confidence 555667888887 77899999999999888854
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=180.44 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=179.3
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+.||.||+.|.+||+|+.||.|.|||..+...-..+..|.- ++++++|.+. ++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~------------------pi~sl~WS~d---------gr 78 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR------------------PITSLCWSRD---------GR 78 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc------------------ceeEEEecCC---------CC
Confidence 57889999999999999999999999998876666654443 4556666654 88
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCC----CCe
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRAST----KGI 162 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~v 162 (579)
.|++++.|..|.+||+..|.+..++. ..++|+.+.|+|..+. ++.+-.+..-.+-++..++....-.... ...
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 89999999999999999999887774 5689999999995433 3333344445555554432211111111 122
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc----
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---- 235 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~---- 235 (579)
.+..|++.|+++++|. |.+.+||..+.+++..++-.. ..|.++.|+..|++|+.-+ .|+.|+.|++..-...
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccC
Confidence 3446889999999998 999999999999998887665 7899999999999999988 6999999998732111
Q ss_pred cceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCceeeccc
Q 008058 236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 290 (579)
.......+. -+......++|+ .+|.|+++++. -..++||.-..|..++.+
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceeeee
Confidence 000101111 122234456665 89999998875 457999988777766544
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.7e-22 Score=179.47 Aligned_cols=257 Identities=14% Similarity=0.178 Sum_probs=183.9
Q ss_pred cccceEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEE-EeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 5 NIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQT-EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.| -+++||| ...+++.||.||+||+|+++. |.... ....|.+ ++-+++|...
T Consensus 29 sI--S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~------------------PvL~v~Wsdd----- 83 (347)
T KOG0647|consen 29 SI--SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG------------------PVLDVCWSDD----- 83 (347)
T ss_pred ch--heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC------------------CeEEEEEccC-----
Confidence 46 3449999 555777899999999999986 34322 1223333 4456666554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++|+.|+.+++||+.+++.. ++ ..|.++|..+.|-+... .|++|+-|++|+.||++...++.++.- .
T Consensus 84 ----gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-P 156 (347)
T KOG0647|consen 84 ----GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-P 156 (347)
T ss_pred ----CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-c
Confidence 778999999999999999999765 33 57999999999987655 699999999999999999998888774 4
Q ss_pred CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEE-e-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--
Q 008058 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-F-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-- 235 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~-~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-- 235 (579)
+.++++..-..--.++++.+.|.+|+++++..... . ..-+-.+++++..+|....+.++ -+|.+.+..++.+...
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCc
Confidence 57777776543223333348999999987643211 1 11234578999988888778887 6999999999886321
Q ss_pred -cceeEEee---ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058 236 -SASCVLAM---EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 236 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
..+|.... ....+.+..++|. |....|++++.||+..+||-+....+...+.....+.+
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 12232211 1123456667776 88899999999999999998887777766555444443
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.6e-23 Score=176.74 Aligned_cols=242 Identities=16% Similarity=0.221 Sum_probs=186.3
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.|.+. ..+--|.+||||+.|++|+|+.++++ ..+.++++|.+++..+.|.++ .
T Consensus 13 ~IHda--~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP---k------------------- 68 (299)
T KOG1332|consen 13 MIHDA--QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP---K------------------- 68 (299)
T ss_pred hhhHh--hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc---c-------------------
Confidence 34444 33336899999999999999998754 467889999999988888766 0
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC---ceeeEe
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG---SLLGKF 155 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~---~~~~~~ 155 (579)
-+.+|++++.||.|.||.-..++.... ....|...|++++|.|. |-.|++++.||.|.+.+.++. ...+..
T Consensus 69 ---~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 69 ---FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred ---cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 189999999999999999988854321 12568999999999985 456899999999999987654 233446
Q ss_pred ecCCCCeeEEEEccC---C-----------CEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCC----CE
Q 008058 156 RASTKGISCMAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KY 213 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~---g-----------~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~----~~ 213 (579)
.+|.-.|++++|.|. | +.|++|+ +.|+||+..+++ .-++|.+|.+.|+.++|.|.- .+
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 779999999999986 5 5688888 899999998763 345689999999999999963 47
Q ss_pred EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
+++++ .||++.||..+..... .+... +..-...+-.+.|+ ..|+.|++++.|+.+.+|.-
T Consensus 226 iAS~S-qDg~viIwt~~~e~e~-wk~tl-l~~f~~~~w~vSWS-----~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 226 IASCS-QDGTVIIWTKDEEYEP-WKKTL-LEEFPDVVWRVSWS-----LSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eEEec-CCCcEEEEEecCccCc-ccccc-cccCCcceEEEEEe-----ccccEEEEecCCcEEEEEEe
Confidence 88887 8999999988743221 11111 22233445556676 89999999999999999963
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=203.07 Aligned_cols=235 Identities=14% Similarity=0.223 Sum_probs=188.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|.|+|++|++|+.||.|++|+...-. ....+.-+ +. .+.|.... .+.
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~------------------g~---~v~~ia~~--------s~~ 68 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS------------------GE---LVSSIACY--------SNH 68 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc------------------Cc---eeEEEeec--------ccc
Confidence 45999999999999999999999876542 11111100 11 12222221 567
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++|+.+++|.+|....++.-. ++...+-++++++|+.+|++++.||.|-.|++.++.+......+++|.++|.++.|+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~-iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT-ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc-eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 9999999999999998876532 223356789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecC--------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h--------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
|++++||+.+ |.|++||++++.+..++.+- ...+..++|+|+|..++..+ -|+.|++|+..+....
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~--- 223 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ--- 223 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence 9999999987 99999999998876666432 34567889999977777776 5999999999988754
Q ss_pred eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
..+...+....+.++.|+ |+|+|||+++.||.|.|||.++
T Consensus 224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence 333444555557888888 9999999999999999999996
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-21 Score=174.57 Aligned_cols=268 Identities=10% Similarity=0.089 Sum_probs=205.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+..+++++.|..+++||..+++.+..+. .+.-.|..++|......++.++. |.+|+..++.+.+.++.|.+|...|+
T Consensus 26 G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 26 GLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred CCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence 8889999999999999999999987774 45567888888776667776665 88999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++.+|-+..+++++ ++|++||++..++..-+.-...+ .++|.|+|-++|++. +...|++||++.-..... ..+
T Consensus 105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~-~~~~IkLyD~Rs~dkgPF-~tf 180 (311)
T KOG1446|consen 105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN-GSELIKLYDLRSFDKGPF-TTF 180 (311)
T ss_pred EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec-CCCeEEEEEecccCCCCc-eeE
Confidence 999999999999999 89999999987776555433333 478999998888876 556999999998654321 223
Q ss_pred eee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce--EEeeecccCcccccccchhhhhcc
Q 008058 242 AME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK--ILSSSEDVNSKSQKSATAAIFAAK 318 (579)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 318 (579)
.+. .....+..+.|+ |||++|+.++..+.+++.|.-+|..+.+..... ........|.|+++ .|+.++
T Consensus 181 ~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~----Fvl~gs 251 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK----FVLSGS 251 (311)
T ss_pred ccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc----EEEEec
Confidence 333 334455667777 999999999999999999999998765543322 22223344789998 999999
Q ss_pred ccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceeccccee
Q 008058 319 LQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.||.+..|+. .....+..+.+ +.+++.++.|.|.-..+ +|++ ..+.+|=
T Consensus 252 ~dg~i~vw~~--------~tg~~v~~~~~~~~~~~~~~~fnP~~~mf-~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 252 DDGTIHVWNL--------ETGKKVAVLRGPNGGPVSCVRFNPRYAMF-VSAS--SNLVFWL 301 (311)
T ss_pred CCCcEEEEEc--------CCCcEeeEecCCCCCCccccccCCceeee-eecC--ceEEEEe
Confidence 9886655432 22233334555 67889999999998877 6654 5666773
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-22 Score=195.89 Aligned_cols=290 Identities=13% Similarity=0.163 Sum_probs=215.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++-|+++ ..+|.|.+||+|+.||+|+||.+.+|+|+..++. +..+.|++|.|...
T Consensus 399 Htg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------------d~~I~~vaw~P~~~--- 454 (733)
T KOG0650|consen 399 HTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------------DSEIRSVAWNPLSD--- 454 (733)
T ss_pred cCCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------------cceeEEEEecCCCC---
Confidence 35678556 7888999999999999999999999999988752 33566777766531
Q ss_pred cccCCcEEEEEECC--------------------------------CeEEEEEccCC---e-EEEEecCCCCCCEEEEEE
Q 008058 82 RKLGSSLLVLGTGG--------------------------------GDVLALAVSAG---Q-LKWRLSDCHPGGVSAISF 125 (579)
Q Consensus 82 ~~~~~~~l~~~~~~--------------------------------g~i~iwd~~~~---~-~~~~~~~~h~~~V~~l~~ 125 (579)
...|+++... +.+..|.-... + -+.. .-.|...|.++.|
T Consensus 455 ----~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 455 ----LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTW 529 (733)
T ss_pred ----ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE-EEecCCccceeee
Confidence 1222222222 22334443311 1 0111 1247789999999
Q ss_pred ccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCC
Q 008058 126 ATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA 201 (579)
Q Consensus 126 ~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~ 201 (579)
+..|.||++...+ ..|.|+++...+...-|+-..+.|.++.|+|...+|++++ ..|++||+..+..++++......
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee
Confidence 9999999987653 5789999987766666766778899999999999999999 99999999988888888777788
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
|.+++++|.|..|+.++ .|+.+..+|+.-..+ ...++.++...++.++|. +.-..+++|+.||++.||..
T Consensus 610 iS~msihp~GDnli~gs-~d~k~~WfDldlssk----Pyk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSK----PYKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeecCCCCeEEEec-CCCeeEEEEcccCcc----hhHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence 99999999999999887 799999999987643 245667888888888887 77789999999999999953
Q ss_pred CCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCC----cEEEee
Q 008058 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNC 357 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~~~~ 357 (579)
.-...+. + +.+...++.+.+|... |..+.|
T Consensus 680 ~VY~Dl~-------------------q---------------------------npliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 680 MVYNDLL-------------------Q---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred eeehhhh-------------------c---------------------------CCceEeeeeccCceeecccceEeecc
Confidence 1111000 0 0111223355566544 889999
Q ss_pred cCCcceeeccccceecccce
Q 008058 358 SQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 358 s~dg~~l~~s~s~d~~~~~w 377 (579)
.|...+| +|++.|++|++|
T Consensus 714 HP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred cCCCceE-EecCCCceEEee
Confidence 9999999 999999999998
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=194.87 Aligned_cols=328 Identities=15% Similarity=0.201 Sum_probs=226.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEE----EEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 15 PALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
|=|.+++++..++.+.||+..+++.. ..+..... + .++.+.--+. . -+.++
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~----------------~-~Ital~HP~T--Y------LNKIv 176 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG----------------D-FITALLHPST--Y------LNKIV 176 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccccccceeeeccC----------------C-ceeeEecchh--h------eeeEE
Confidence 34778888888899999988764111 01110000 0 0222211110 0 34589
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
+|+..|.+.+|++++++.+.++ .++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.+|+...++|++++|.-|
T Consensus 177 vGs~~G~lql~Nvrt~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 177 VGSSQGRLQLWNVRTGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred EeecCCcEEEEEeccCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence 9999999999999999999888 578899999999998889999999999999999999999999966689999999999
Q ss_pred CCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------------
Q 008058 171 GKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------------ 234 (579)
Q Consensus 171 g~~l~~~~---g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~------------ 234 (579)
|+.+.+.+ |.+.+||++..+.+.... .|.+.|....|.|....+++++ .|+.+++|=.+++..
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCC
Confidence 98655544 899999999988876665 8989999999999999988887 799888885542110
Q ss_pred ccceeE----------------------------------------------------------Eee-------------
Q 008058 235 QSASCV----------------------------------------------------------LAM------------- 243 (579)
Q Consensus 235 ~~~~~~----------------------------------------------------------~~~------------- 243 (579)
....|+ ..+
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 000000 000
Q ss_pred -------------------------ec-----CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC--
Q 008058 244 -------------------------EH-----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK-- 291 (579)
Q Consensus 244 -------------------------~~-----~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 291 (579)
.+ ......+++.+ +-|++.+.|...|.|.+||+++|-....+-
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-----~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~ 489 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-----FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS 489 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-----ccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence 00 00122233333 668999999999999999999997766552
Q ss_pred -CceEEeeecccCcccccccchhhhhccccceecCCceEEEE---------------------------------EeCCC
Q 008058 292 -ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLL 337 (579)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------~~g~~ 337 (579)
.+...+.... ...-.+ .+++++.+|+...|+-.-.. .+...
T Consensus 490 ~ah~~~V~gla-~D~~n~----~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 490 PAHKGEVTGLA-VDGTNR----LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccccCceeEEE-ecCCCc----eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 2222222111 011122 56677777765544321111 01111
Q ss_pred CCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.....+.+.||.+.++.++|||||++| ++++.|++|++||+-
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlp 606 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLP 606 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEecc
Confidence 122344566899999999999999999 999999999999984
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2.4e-21 Score=171.51 Aligned_cols=213 Identities=14% Similarity=0.222 Sum_probs=163.6
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEE--Ee-ccccccccccccccccccccccCccceEEeeeccc
Q 008058 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQT--EF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.+.|+.+ ...+ .|+|+++|+.||.|.|||+++..... -+ -.+. +. ...+-+.+| ...++.+.|.|.+
T Consensus 43 gGsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~----c~-v~~~h~~~H-ky~iss~~WyP~D- 113 (397)
T KOG4283|consen 43 GGSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK----CI-VAKQHENGH-KYAISSAIWYPID- 113 (397)
T ss_pred CCcccee--eeccccceEEeecCCCccEEEEEeccccchhhccceehee----ee-ccccCCccc-eeeeeeeEEeeec-
Confidence 4677667 6666 58999999999999999997653110 00 0000 00 011112244 4567889999987
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
...+.+++-|..+++||..+-+....+. -.+.|++-+++|- .-++++|..|-.|++.|+.+|..-+++
T Consensus 114 -------tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 114 -------TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred -------CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence 7789999999999999999988766663 4578999999983 335778888899999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEE-EEC--CeEEEEECCCC-eeeEE--------------eecCCCCEEEEEEecCCCEEEEE
Q 008058 156 RASTKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDH-KKMQK--------------FSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~-~~~--g~i~vwd~~~~-~~~~~--------------~~~h~~~v~~l~~~~~~~~l~s~ 217 (579)
.+|.+.|.++.|+|...+++ +|+ |.|++||++.. .+... -..|.+.|.+++|+.++.+++++
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 99999999999999887655 555 99999999753 22222 24677889999999999999999
Q ss_pred ecCCCeEEEEEcCCCcc
Q 008058 218 AVGERYIALWRTDGVKK 234 (579)
Q Consensus 218 s~~d~~i~vwd~~~~~~ 234 (579)
+ .|..+++|+..++..
T Consensus 265 g-td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 265 G-TDDRIRVWNMESGRN 280 (397)
T ss_pred c-CccceEEeecccCcc
Confidence 8 688999999988764
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.5e-22 Score=187.18 Aligned_cols=236 Identities=15% Similarity=0.210 Sum_probs=189.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.| ++++.||||+|||+|+.|..|.||+.++.+.++.+++|...+.++.|...
T Consensus 203 kei--l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------------------------- 255 (479)
T KOG0299|consen 203 KEI--LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------------------------- 255 (479)
T ss_pred cee--EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-------------------------
Confidence 446 88899999999999999999999999999999999999998888887755
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
.+.+++++.|+.|++|++.....+.++ .+|.+.|.++....-++.+-.|+.|+++++|++.. .....|.++.+.+-
T Consensus 256 --t~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sid 331 (479)
T KOG0299|consen 256 --TSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSID 331 (479)
T ss_pred --ccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCee
Confidence 677999999999999999988777555 58999999999888888777788999999999943 33446788888999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cC-----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h-----------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
|++|-. ...+++|+ |.|.+|++...+++.+.. .| +..|++++..|....+++++ ++|.|++|.+
T Consensus 332 cv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i 409 (479)
T KOG0299|consen 332 CVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKI 409 (479)
T ss_pred eEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEe
Confidence 999985 45677777 999999999988877653 12 23789999999998888876 8999999999
Q ss_pred CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEE
Q 008058 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIW 279 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iw 279 (579)
..+-.. ...+..+. -..+++.++|+ ++|++|++| +....+--|
T Consensus 410 ~~g~r~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 410 EDGLRA-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cCCccc-cceeeecc-cccEEEEEEEc-----cCCCEEEEeccccccccee
Confidence 887322 12334443 45567777877 899977776 344444444
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.1e-23 Score=192.87 Aligned_cols=272 Identities=14% Similarity=0.192 Sum_probs=207.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+..|...+++.||+ .|.|+|||+.... ...++..+-. ...+.-+..+.-.+. ++.
T Consensus 423 cAvtIS~~trhVyTgG-kgcVKVWdis~pg-------~k~PvsqLdc------l~rdnyiRSckL~pd---------grt 479 (705)
T KOG0639|consen 423 CAVTISNPTRHVYTGG-KGCVKVWDISQPG-------NKSPVSQLDC------LNRDNYIRSCKLLPD---------GRT 479 (705)
T ss_pred EEEEecCCcceeEecC-CCeEEEeeccCCC-------CCCccccccc------cCcccceeeeEecCC---------Cce
Confidence 3447888889999998 5899999986431 1111111100 001111222222222 788
Q ss_pred EEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
|++|+.-.++.|||+......... +....-.+++++.+||.+..++|..||.|.|||+.+...++.|++|.+.+.||.+
T Consensus 480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 999999999999999876542111 1222245788999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
++||..|.+|+ ++|+-||+++++.+.... ..+.|.++.++|++.+++.+- .++.+.+-.....++ +.+..
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yqlhl 631 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQLHL 631 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------eeecc
Confidence 99999999999 999999999987665432 567899999999999999875 788887777666542 34555
Q ss_pred CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccce
Q 008058 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (579)
+...+-.+.|. +-|+++++.+.|+-+..|...-|..+...+......+|.. +.+.+ +|++|+.+..
T Consensus 632 heScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI--S~ddk----yIVTGSGdkk 697 (705)
T KOG0639|consen 632 HESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI--SFDDK----YIVTGSGDKK 697 (705)
T ss_pred cccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeeccccCcceeeee--ccCce----EEEecCCCcc
Confidence 66667777787 8999999999999999999999988888777777777766 55656 8999998753
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=184.30 Aligned_cols=312 Identities=14% Similarity=0.134 Sum_probs=226.8
Q ss_pred eEEEEcc--CCCEEEEEe--CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 9 ILTSFSP--ALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 ~~~~fs~--dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
-|++||+ .|.+++... .+..+.|||+..+......+..+..+ ....|+|.+
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v------------------~~a~FHPtd------- 212 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV------------------FLATFHPTD------- 212 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE------------------EEEEeccCC-------
Confidence 4569998 356666654 46779999999887766555433333 345555554
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
..+++....|.+..|+++.+....+. .+....-|.|++|.++|. +++|.++|.|.||+..+.+..+...+|.+.
T Consensus 213 --~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg 289 (626)
T KOG2106|consen 213 --PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGG 289 (626)
T ss_pred --CcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence 34777778899999999988765432 222236799999999986 789999999999999888877777799999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCe-----------ee-----------------------------EEeecCC
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------KM-----------------------------QKFSGHP 199 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-----------~~-----------------------------~~~~~h~ 199 (579)
|.+++...+|.++- |+ ..|..||-.-.+ .+ ....+|.
T Consensus 290 v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~ 368 (626)
T KOG2106|consen 290 VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG 368 (626)
T ss_pred eEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc
Confidence 99999999998777 66 789999832100 00 0224677
Q ss_pred CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 200 ~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 279 (579)
.....++.+|+...+++++ .|+.+++|+ ..+ ..++.. -.....++.|. |.| .++.|+..|...+.
T Consensus 369 delwgla~hps~~q~~T~g-qdk~v~lW~--~~k-----~~wt~~-~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCG-QDKHVRLWN--DHK-----LEWTKI-IEDPAECADFH-----PSG-VVAVGTATGRWFVL 433 (626)
T ss_pred cceeeEEcCCChhheeecc-CcceEEEcc--CCc-----eeEEEE-ecCceeEeecc-----Ccc-eEEEeeccceEEEE
Confidence 7888899999999999998 799999999 222 222222 22334567776 888 99999999999999
Q ss_pred ECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
|.++...+..+.. ..++.... +++++. +++.|+.|+.+|++. +..+...+....+..+ .+++.+.||+
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~-ysp~G~----~lAvgs~d~~iyiy~----Vs~~g~~y~r~~k~~g--s~ithLDwS~ 501 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVR-YSPDGA----FLAVGSHDNHIYIYR----VSANGRKYSRVGKCSG--SPITHLDWSS 501 (626)
T ss_pred ecccceeEEEEec-CCceEEEE-EcCCCC----EEEEecCCCeEEEEE----ECCCCcEEEEeeeecC--ceeEEeeecC
Confidence 9999766655444 33344333 788888 999999998877642 1111112222334444 7899999999
Q ss_pred Ccceeeccccceecccce
Q 008058 360 DGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 360 dg~~l~~s~s~d~~~~~w 377 (579)
|++++ .+-|-|--+..|
T Consensus 502 Ds~~~-~~~S~d~eiLyW 518 (626)
T KOG2106|consen 502 DSQFL-VSNSGDYEILYW 518 (626)
T ss_pred CCceE-EeccCceEEEEE
Confidence 99999 999999999999
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=180.99 Aligned_cols=241 Identities=16% Similarity=0.290 Sum_probs=192.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|+++ .|+|....|++|+.|++|++||...-.....++.... ...+.++.++|.
T Consensus 173 devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd----------------~~~vrsiSfHPs------- 227 (430)
T KOG0640|consen 173 DEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD----------------TEPVRSISFHPS------- 227 (430)
T ss_pred Ccccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc----------------cceeeeEeecCC-------
Confidence 467556 9999999999999999999999875443333332111 223445555554
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTK 160 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~ 160 (579)
|.++++|+.-..+++||+.+-++.... ..+|++.|+++.+++.|+..++++.||.|++||-.+++++.++. +|.+
T Consensus 228 --GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 228 --GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred --CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 899999999999999999999886433 35799999999999999999999999999999999999999875 4555
Q ss_pred -CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 161 -GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 161 -~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.|.+..|..+|+++++.+ ..+++|.+.+++++..+.|-. .--+...|+....|++.--...+.+.-||.++.
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 899999999999999998 799999999999999887542 123456788888888876555678999999998
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
... ..+.+.|.+ .+.+...+ |.+.-+++++.|-.+++|-
T Consensus 386 dr~---~l~slgHn~-a~R~i~HS-----P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 386 DRV---ALLSLGHNG-AVRWIVHS-----PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhh---hhcccCCCC-CceEEEeC-----CCCCceeeecccceeeeee
Confidence 754 445565655 45556666 8999999999999999995
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.4e-21 Score=185.53 Aligned_cols=268 Identities=17% Similarity=0.148 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE-EEEECC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG 95 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~ 95 (579)
++.+++++.|+.|++||..+++....+..+.. + ..+.|.+. +..+ +++..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~------------------~~l~~~~d---------g~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-P------------------RGITLSKD---------GKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-C------------------CceEECCC---------CCEEEEEECCC
Confidence 35788999999999999999988877763321 1 23444432 4544 566778
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l 174 (579)
+.|++||..+++....+.. + ..+..++|+|+++.++++ +.|+.+++||+.+++.+..+.. ...+.+++|+|+|+++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPS-G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccC-C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 9999999999988765532 3 335788999999987655 5689999999998887777763 3356889999999999
Q ss_pred EEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-----
Q 008058 175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP----- 246 (579)
Q Consensus 175 ~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~----- 246 (579)
+++. ..+.+||..+++....+.. ...+..+.|+|+++++++++..++.|++||+.+++... .......
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~ 205 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK---KITFEIPGVHPE 205 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee---eeeecccccccc
Confidence 9887 3578889988877665543 33457899999999887665468999999999876431 1111110
Q ss_pred ceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecC
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
......+.++ |++++++++ +.++.+.+||.++++.+...
T Consensus 206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------------------------------- 245 (300)
T TIGR03866 206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL----------------------------------- 245 (300)
T ss_pred cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 0111234455 899886554 45778999998665432110
Q ss_pred CceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+...+.+++|+|||.+|.++++.++.+++|++.
T Consensus 246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 0111466889999999983334668999999985
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.3e-22 Score=191.45 Aligned_cols=230 Identities=16% Similarity=0.257 Sum_probs=183.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+|...|||+.|++|+.-.++.|||+..-.. ..++.........+..+++ .+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak 522 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK 522 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence 458899999999999999999999975543 2223222122222222332 77
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
+.++|+.||.|.|||+.....+.++ +||++.+.|+.+++||..|.+|+.|.+||.||+++++.+.... ....|.++..
T Consensus 523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 8899999999999999998888666 7999999999999999999999999999999999998776644 3568999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
+|++.++++|- +.+.|...... ....+.-|.+-|.++.|.+-|+++++.| .|+.+..|...-+.. ++....
T Consensus 601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGas-----iFqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS-----IFQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCccccc-----eeeccc
Confidence 99999999998 67777765433 3456677999999999999999999998 799999999888763 355555
Q ss_pred CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
...++.|- ++ .|.++|++|+.|....||.+
T Consensus 674 ~SsVlsCD-IS-----~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCD-IS-----FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeee-ec-----cCceEEEecCCCcceEEEEE
Confidence 55555444 43 68899999999999998864
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=7e-22 Score=193.82 Aligned_cols=222 Identities=16% Similarity=0.265 Sum_probs=183.9
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+|-+ ++-.+++|+.|++|.+|...+......+++|...+.++....+ +. ++
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~---------------------------~~-~i 116 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED---------------------------GT-LI 116 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc---------------------------Cc-eE
Confidence 5554 4456999999999999999999999999988876665433322 33 89
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
+|+.|.++++|-... +... ..+|+..|+++.+-|++ .++||+.|.+|++|.- ++.+++|.+|.+-|..+++-|+
T Consensus 117 SgSWD~TakvW~~~~--l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 117 SGSWDSTAKVWRIGE--LVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ecccccceEEecchh--hhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence 999999999997653 3323 47999999999999988 7899999999999984 8899999999999999999988
Q ss_pred CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058 171 GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 171 g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
+.++-++. |.|++|++ +|+++..+.+|...|.++...+++..++++| +|+++++|+.. +|...+.++...
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~-------e~~q~I~lPtts 261 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKD-------ECVQVITLPTTS 261 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecC-------ceEEEEecCccc
Confidence 76665555 99999999 8889999999999999999878888899998 89999999976 266778888855
Q ss_pred eEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
+.++.+- ++|. |++|+.||.|+||...
T Consensus 262 iWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVL-----LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence 5555443 5655 7889999999999865
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.4e-21 Score=172.95 Aligned_cols=259 Identities=19% Similarity=0.221 Sum_probs=187.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-.+.|+|.++.|+.++.||.+++||+........++ |..++. ++++.+ ...
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL------------------~c~F~d----------~~~ 67 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLL------------------DCAFAD----------EST 67 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCcee------------------eeeccC----------Cce
Confidence 455999999999999999999999998776555554 333333 333332 345
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++|+.||.|+.+|+.++... ....|..+|.|+.+++....+++|+.|++|++||.+....+.++.. ...|.|+...
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~ 144 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS 144 (323)
T ss_pred EEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc
Confidence 899999999999999998874 2357999999999999888999999999999999987656656553 3488888876
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-c----cee
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S----ASC 239 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-~----~~~ 239 (579)
|+.|++|. ..+.+||+++.....+. ..-+-.++++++-|++.-++.++ -||.|.+=.++..... + .+|
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhceeEEe
Confidence 55666655 79999999986543222 23345689999999877677776 6999888777665211 1 112
Q ss_pred EEeee---cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccc
Q 008058 240 VLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (579)
Q Consensus 240 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
..... .....+..+.|+ |-...+++|+.||.|.+||+.+.+.+..+.+-...+.+.. |+.++.
T Consensus 222 Hr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls-fs~dG~ 287 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS-FSMDGS 287 (323)
T ss_pred eecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE-eccCCC
Confidence 22111 113456667776 8788999999999999999999988877665533333322 444444
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.4e-23 Score=202.55 Aligned_cols=237 Identities=15% Similarity=0.226 Sum_probs=186.5
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.|+. +.++||+++..|.|.+||+.. .+.+..|..|.- .+.++.|++.. ..
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R------------------s~~~ldfh~te--------p~ 147 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER------------------SANKLDFHSTE--------PN 147 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcc------------------ceeeeeeccCC--------cc
Confidence 5654 467999999999999999976 444455655543 44566666665 77
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM 165 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l 165 (579)
+|++|+.||.|++||++..+....+ .+....|+++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 8999999999999999998877565 45788999999999 5677999999999999999865 5677899999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEE-EEEec-CCCeEEEEEcCCCcccccee
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV-LSSAV-GERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l-~s~s~-~d~~i~vwd~~~~~~~~~~~ 239 (579)
.|+|++.+||+|+ +.|+|||+.+.+. +.++. ...+|..++|-|..++. ++++. .|-.|+|||++..-..
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---- 301 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---- 301 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----
Confidence 9999999999999 8999999987654 33333 45789999999987754 44432 4778999999886533
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
..++..+...++.++|.. .|...+.+++.||++..-.+++.
T Consensus 302 ~~t~~eH~~~vt~i~W~~----~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDS----GDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccC----CCceeeEeecCccHHHHhhhhcc
Confidence 345666777778888862 45678999999998876554443
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.2e-21 Score=183.60 Aligned_cols=246 Identities=12% Similarity=0.122 Sum_probs=185.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEE---------ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-----
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS----- 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~---------~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~----- 150 (579)
..++++.+.++.|+|||..+..-... .+.+|...=++++|++.. .++++++.|++|++||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 67888899999999999875432111 236788878899999854 459999999999999997442
Q ss_pred --eeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECC--CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058 151 --LLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 151 --~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~ 223 (579)
....+.+|...|..++|+|- ..++++++ +.+.|||++ +.++.....+|.++|++++|+|-+.+++++++.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 34568899999999999994 45666666 899999999 556677788999999999999977666665557999
Q ss_pred EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccC
Q 008058 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (579)
|.+||+++.+. +..++..+...+..+.|++ .....||+++.|+.+.+||+..-...+..
T Consensus 297 V~LwDlRnL~~----~lh~~e~H~dev~~V~WSP----h~etvLASSg~D~rl~vWDls~ig~eq~~------------- 355 (422)
T KOG0264|consen 297 VALWDLRNLNK----PLHTFEGHEDEVFQVEWSP----HNETVLASSGTDRRLNVWDLSRIGEEQSP------------- 355 (422)
T ss_pred EEEeechhccc----CceeccCCCcceEEEEeCC----CCCceeEecccCCcEEEEeccccccccCh-------------
Confidence 99999998764 3566777777777888872 34567888899999999997532221110
Q ss_pred cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.. +| . -..+-.-.||...|..+.|.|.-.+..+|.+.|+.+.+|...
T Consensus 356 -eda~-----------dg-----p-----------pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 -EDAE-----------DG-----P-----------PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -hhhc-----------cC-----C-----------cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 01 0 011113348999999999999999877999999999999874
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=8.6e-23 Score=185.55 Aligned_cols=269 Identities=10% Similarity=0.032 Sum_probs=202.7
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
|++=+|.. ..+|+|+.||.|+|||+.+..+...|+.|.+.+..+.+. ...
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~-----------------------------~~~ 121 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT-----------------------------QTS 121 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec-----------------------------ccc
Confidence 33667766 679999999999999999999999999998877766554 234
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++++.|.+|+.|.+... ....+. -.+.+.++.-+..+..++|||.+ |.|||.....+++.+.-....|.++.|+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecC
Confidence 789999999999998764 333332 23567788877778889998765 8999999889999988777899999999
Q ss_pred cCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058 169 SDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 169 p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
|... +|+++. +.|.+||++++.+++++. -.-.-+.|+|+|.+-.|++ +++|..++.||++..... +.....
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~-a~ED~nlY~~DmR~l~~p----~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVA-ANEDHNLYTYDMRNLSRP----LNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceee-ccccccceehhhhhhccc----chhhcc
Confidence 9665 455553 899999999999887765 2334578999996544544 558999999999886533 233345
Q ss_pred CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecC
Q 008058 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
+...+-.+.|+ |.|+-+++|+.|.+|+||....+..-......+.+-.....++.+.+ +|++|+.|+.+++
T Consensus 271 hvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk----yi~SGSdd~nvRl 341 (433)
T KOG0268|consen 271 HVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK----YIISGSDDGNVRL 341 (433)
T ss_pred cceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc----EEEecCCCcceee
Confidence 55556667777 99999999999999999998877543222222222121122677777 9999999987777
Q ss_pred Cc
Q 008058 326 AS 327 (579)
Q Consensus 326 ~~ 327 (579)
|.
T Consensus 342 Wk 343 (433)
T KOG0268|consen 342 WK 343 (433)
T ss_pred ee
Confidence 54
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-23 Score=204.87 Aligned_cols=231 Identities=15% Similarity=0.247 Sum_probs=198.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++.|.++ ..-..++.+++|+.|..+.+|.+..-..+..+.+|..++.++.|..+
T Consensus 28 saav~~l--k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~------------------------ 81 (825)
T KOG0267|consen 28 SAAVGCL--KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS------------------------ 81 (825)
T ss_pred hhhhcee--eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc------------------------
Confidence 3444334 33456788999999999999999888888889999998888888776
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
..+|+.|+.+|.|++||+..++.+..+ .+|...+..+.|+|-+.++++|+.|+.+++||.+...+.+.+++|...+
T Consensus 82 ---E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 82 ---ERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred ---hhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence 788999999999999999999988655 6899999999999999999999999999999999888999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.++.|+|+|++++.|+ ..++|||...|+.+..|.+|.+.+..+.|+|..-.++.+| .|+++++||+++-+.+
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I----- 231 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVI----- 231 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEEe-----
Confidence 9999999999999998 8999999999999999999999999999999886666666 7999999999976533
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
-........+.+..|+ |++..+++|..+.
T Consensus 232 ~s~~~~~~~v~~~~fn-----~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFN-----PDGKIVLSGEQIS 260 (825)
T ss_pred eccCCccCCceeeeec-----CCceeeecCchhh
Confidence 2333335556778887 8999888887654
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.6e-21 Score=189.46 Aligned_cols=291 Identities=18% Similarity=0.212 Sum_probs=200.6
Q ss_pred ccceEEEEccCC---CEEEEEeCCCcEEEEECCCCeEE------EEeccccccccccccccccccccccCccceEEeeec
Q 008058 6 IRDILTSFSPAL---DYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 6 V~~~~~~fs~dg---~~las~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+..+.+.|++.. ..||.+..||.|.++|....... ..+..|. ..+..+.|.+.
T Consensus 50 ~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~------------------nAifDl~wapg 111 (720)
T KOG0321|consen 50 VPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK------------------NAIFDLKWAPG 111 (720)
T ss_pred CCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc------------------ceeEeeccCCC
Confidence 334556777633 47888999999999998654322 2222222 23445667663
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc----
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS---- 150 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~---- 150 (579)
...|+++++|.++++||+.+++++.. +..||.+.|.+++|.|.+. .|++|+.||.|.+||++-..
T Consensus 112 ---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 112 ---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred ---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence 67799999999999999999988644 3468999999999999655 58899999999999986321
Q ss_pred -----------------------eeeEeecCCCCeeE---EEEccCCCEEEEEC---CeEEEEECCCCeeeE--------
Q 008058 151 -----------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------- 193 (579)
Q Consensus 151 -----------------------~~~~~~~~~~~v~~---l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~-------- 193 (579)
.+...+++...|.+ +.+..|...||+++ +.|+|||++......
T Consensus 183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~ 262 (720)
T KOG0321|consen 183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD 262 (720)
T ss_pred HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc
Confidence 12223344555555 55667889999987 799999998754322
Q ss_pred EeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE
Q 008058 194 KFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 194 ~~~~h---~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (579)
.+.-| .-.+.++.....|.+|++.+ .|+.|++|++...... .+..+.+. ....++...+.+|++.++++|
T Consensus 263 ~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~s---P~~~~sg~---~~~sf~vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 263 KYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSIS---PVAEFSGK---LNSSFYVKSELSPDDCSLLSG 335 (720)
T ss_pred CccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcC---chhhccCc---ccceeeeeeecCCCCceEecc
Confidence 22233 23466677777789998887 5999999999886543 22222221 111222222334999999999
Q ss_pred EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008058 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (579)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (579)
+.|...++|.+.+.+.- + . -+.||..
T Consensus 336 Ssd~~ayiw~vs~~e~~-----------------~-------~------------------------------~l~Ght~ 361 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAP-----------------P-------A------------------------------LLLGHTR 361 (720)
T ss_pred CCCcceeeeeecCccCC-----------------h-------h------------------------------hhhCcce
Confidence 99999999986544320 0 0 2347888
Q ss_pred CcEEEeecCCcceeeccccceecccceeeeecee
Q 008058 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVT 384 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~ 384 (579)
+|++++|.|....=.+++|+|..+++|++.+.+.
T Consensus 362 eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 362 EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred EEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 8999999875543227889999999999854443
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=7.6e-21 Score=186.55 Aligned_cols=341 Identities=13% Similarity=0.104 Sum_probs=227.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
.++.|+|.+..|++++.|.++.||...+. --+....-. .-++.+...-...|++. +
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG-------------e~gg~a~GF~g~lw~~n---------~ 328 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG-------------EVGGSAGGFWGGLWSPN---------S 328 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCccceEEEEEEee-------------cccccccceeeEEEcCC---------C
Confidence 45599999999999999999999987654 222222210 01122223444566654 6
Q ss_pred cEEEEEECCCeEEEEEccCC-eE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------
Q 008058 87 SLLVLGTGGGDVLALAVSAG-QL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--------------- 149 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~-~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--------------- 149 (579)
+.++.-+..|..++|..... .. ......||.+.|++++|+|.|.++++.+.|.+-|+|-.-..
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 77888889999999993332 11 22344799999999999999999999999988887643200
Q ss_pred --------------------ceeeEee-----------------------------------------------------
Q 008058 150 --------------------SLLGKFR----------------------------------------------------- 156 (579)
Q Consensus 150 --------------------~~~~~~~----------------------------------------------------- 156 (579)
+.++.|+
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 0011111
Q ss_pred ----------------------------------cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEe
Q 008058 157 ----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 157 ----------------------------------~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~ 195 (579)
+|...|++++.+|+|+++|+++ ..|++|+..+...+..+
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L 568 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL 568 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence 6788999999999999999987 37999999998888899
Q ss_pred ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 196 ~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
.+|.-.|+.++|+|||++|++.+ .|+++.+|........... ......|..++-.+.|+ |++++++++|.|.+
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWS-----PDEKYFATASRDKK 641 (764)
T ss_pred cccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhh-hccccccceEEEEcccC-----cccceeEEecCCce
Confidence 99999999999999999999998 7999999998654432111 11244566667667776 99999999999999
Q ss_pred EEEEECCCc--eeecccC--CceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCC----CceeEEEec
Q 008058 276 CYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL----KPSFQKILV 347 (579)
Q Consensus 276 i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~ 347 (579)
|++|..... +.+.... +....++..+....+.......++.|-..|.+.++.-...-..+... ........+
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG 721 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence 999998777 3333211 11122222221122222222244555555544433211000000000 011223346
Q ss_pred CCCCcEEEeecCC----------cceeeccccceecccceee
Q 008058 348 NSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 348 h~~~v~~~~~s~d----------g~~l~~s~s~d~~~~~w~~ 379 (579)
|...|..++|+|. ...| ++|+.|.++++.++
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv 762 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV 762 (764)
T ss_pred hHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence 8888999999975 2456 88888999988876
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.7e-21 Score=179.02 Aligned_cols=287 Identities=11% Similarity=0.129 Sum_probs=213.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++|+ ++.|+|....+++++.||+++||.++.. ..++.+.-...++....|.+.
T Consensus 213 ~~~I~--sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~---------------------- 268 (514)
T KOG2055|consen 213 HGGIT--SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN---------------------- 268 (514)
T ss_pred cCCce--EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC----------------------
Confidence 57784 4599999999999999999999987632 234444333333443333333
Q ss_pred ccccCCc-EEEEEECCCeEEEEEccCCeEEEE-ecCCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 81 KRKLGSS-LLVLGTGGGDVLALAVSAGQLKWR-LSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 81 ~~~~~~~-~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~-~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
+. .+++++...-++.||+.+.+...- ...++. ..+..+..+|++++|+..+..|.|.+....+++.+.+++
T Consensus 269 -----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 269 -----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred -----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 44 788888888899999998876421 112333 357788899999999999999999999999999999988
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
-.+.|..++|+.+|+.|++++ |.|++||++...++..+... +.| ++++.++++.||++|+ +.|.|.|||.++-.
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCF 420 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEecc-CcceEEEeccchhh
Confidence 467899999999999887775 99999999999999888643 333 4677789999999987 79999999965432
Q ss_pred c-ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc--CCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058 234 K-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
. ....++.++..-...++.+.|+ |+++.||.++. +..+++-.+.+.......++ .
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-------------~---- 478 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-------------S---- 478 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCC-------------C----
Confidence 1 1133556666667778888888 99999988876 55666665443332221110 0
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
...-+.|+|++|||.|-++ +-|..++.+.+|.+
T Consensus 479 -----------------------------------n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL 511 (514)
T KOG2055|consen 479 -----------------------------------NTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKL 511 (514)
T ss_pred -----------------------------------CCcccceEEEEecCCCceE-EeecCCCceeeEee
Confidence 0122368999999999999 99999999999987
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.4e-21 Score=175.42 Aligned_cols=205 Identities=15% Similarity=0.245 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc-ccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
+..+.|+-+..|.|+||++... +..+......+....+.+-+ ..+|. ...-.++|.|.. ...+++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~--------~g~LlsGDc 232 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIK--------TGRLLSGDC 232 (440)
T ss_pred CcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEecccC-ccceeeeccccc--------ccccccCcc
Confidence 4456777778999999997532 11121111111111111111 12444 344468888753 455788888
Q ss_pred CCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCCeeEEEEc
Q 008058 95 GGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 95 ~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l~~~ 168 (579)
.+.|++|.+.+|... ..-+.+|+..|-+++|+|. ...|++||.||+|+|||++.+ .++. .++|...|+.|.|+
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWN 311 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEcc
Confidence 899999999998653 2234579999999999995 456999999999999999988 3333 48899999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCC---CeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCc
Q 008058 169 SDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~ 233 (579)
..-.+|++|+ |+++|||+++ ++++.+|+-|..+|++|.|+|... .|+++| .|.+|.+||+....
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLSVEA 381 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEeeccC
Confidence 9888999998 9999999985 577999999999999999998654 445554 79999999986543
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.8e-23 Score=202.12 Aligned_cols=210 Identities=15% Similarity=0.195 Sum_probs=180.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
...++.|+.+..+.+|.+.....+..+ .+|..+|.++.|+++...|++|+.+|+|++||+.+++.++++.+|...+.++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV 118 (825)
T ss_pred ceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence 567888888889999999877766554 6899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
.|+|-+.+.++|+ +.+++||.+...+...+.+|...|..+.|+|+|+++++++ +|.+++|||...++.. ..+
T Consensus 119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef 192 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF 192 (825)
T ss_pred eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence 9999999998888 8999999998889999999999999999999999999998 6999999999988744 344
Q ss_pred ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccc
Q 008058 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
..+...+..+-|. |....+++|+.|+++++||+++.+.+...++....+.+.. |.++++
T Consensus 193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~ 251 (825)
T KOG0267|consen 193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK 251 (825)
T ss_pred ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence 4444444455565 8888899999999999999999999887777655555544 566655
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=192.27 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=201.0
Q ss_pred ccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
||++ +.||+|++||+|..-|+++||++.+-+....+..|...+.++.|+.+.. .
T Consensus 462 ~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~------------------------~ 515 (1080)
T KOG1408|consen 462 FRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL------------------------T 515 (1080)
T ss_pred eEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh------------------------h
Confidence 5555 9999999999999999999999999888888888888888777776510 1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec-----C
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA-----S 158 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~ 158 (579)
..+|++++.|.-|++||+..+-...+...+|...|+++.|..+| ..+++++.|+.|.+--.+.......|.. .
T Consensus 516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ 595 (1080)
T KOG1408|consen 516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS 595 (1080)
T ss_pred hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence 56799999999999999988776666668999999999998877 6799999999875433221111111221 2
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
...++.++..|..+++++++ ..|+|||+++++..+.|++ |.+....+...|.|.|+++++ .|+++.++|+.+++
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGE 674 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEeccch
Confidence 34789999999999999998 8999999999999999964 667788889999999999988 59999999999987
Q ss_pred cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
|+..+..+...++.+.|. +|-++|++.+.||+|.||.+...
T Consensus 675 -----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 675 -----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred -----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECchh
Confidence 557778888889999998 89999999999999999997643
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.2e-20 Score=167.83 Aligned_cols=271 Identities=14% Similarity=0.119 Sum_probs=190.0
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd 145 (579)
.+.+++|.|.. ..+++.++.||+|++|+++. |..+.+....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 29 sIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 29 SISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred chheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 45556666522 67788999999999999987 5666566678999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCCeeEEEEccCCC--EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 146 PLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~--~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
+.++ .+..+..|.++|.++.|-+... .|++|+ .+|+.||.+...++.++. -...+.++..- ...++.+. .+
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVat-a~ 175 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVAT-AE 175 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEe-cC
Confidence 9999 5567788999999999987665 889999 899999999999888876 44566666553 23455555 69
Q ss_pred CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec--ccCCce-----
Q 008058 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR--NTKATK----- 294 (579)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~----- 294 (579)
+.|.+|+++.+........-.+ ...+++++.- ++..-.+.|+-+|.+-|..++.+.+.. .++.++
T Consensus 176 r~i~vynL~n~~te~k~~~SpL---k~Q~R~va~f-----~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPL---KWQTRCVACF-----QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcc---cceeeEEEEE-----ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 9999999987643311111111 2223333332 566666999999999999888763321 111111
Q ss_pred ----EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc
Q 008058 295 ----ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL 370 (579)
Q Consensus 295 ----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~ 370 (579)
..+.+. .|-|-.. .+++++.||....|| ......+.+..-|..+|.+++|+.+|.+++-..|.
T Consensus 248 ~~~VYaVNsi-~FhP~hg----tlvTaGsDGtf~FWD--------kdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 248 NDDVYAVNSI-AFHPVHG----TLVTAGSDGTFSFWD--------KDARTKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred CCceEEecce-Eeecccc----eEEEecCCceEEEec--------chhhhhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 111111 2444322 677888877544433 33333344556688999999999999998444454
Q ss_pred e
Q 008058 371 L 371 (579)
Q Consensus 371 d 371 (579)
|
T Consensus 315 D 315 (347)
T KOG0647|consen 315 D 315 (347)
T ss_pred c
Confidence 4
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.6e-19 Score=176.86 Aligned_cols=240 Identities=11% Similarity=0.086 Sum_probs=172.8
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+|+++ ++++.++.|++||..+++....+..+.. ...+.|.+. ++.
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~---------g~~ 86 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-------------------PELFALHPN---------GKI 86 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-------------------ccEEEECCC---------CCE
Confidence 35999999976 5667789999999999887766543211 123444433 454
Q ss_pred EEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058 89 LVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+++ +..++.|++||+.+++.+..+. +...+.+++|+|+|+.+++++.++ .+..||..+++....... ...+.+++
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 163 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE 163 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence 554 4567899999999988775553 234578899999999999888765 567789988877665442 33567899
Q ss_pred EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCC-----C--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP-----G--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 167 ~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~-----~--~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
|+|+|+.+++++ +.|++||+++++.+..+..+. . ....+.|+|++++++.+...++.+.+||+.+++..
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~- 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL- 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-
Confidence 999999886543 899999999998877664321 1 23468899999986655435778999999876533
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccC
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 291 (579)
....+. ..+..+.|+ |+|.+|++++ .+|.|.+||+++++.+...+
T Consensus 243 ----~~~~~~-~~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 243 ----DYLLVG-QRVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred ----EEEEeC-CCcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 112222 234566777 9999998874 58999999999988766553
No 132
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.2e-21 Score=188.96 Aligned_cols=233 Identities=15% Similarity=0.205 Sum_probs=188.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCC--eEEEEecccccccccccc-ccccccccccCccceEEeeecccccccccCCcE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLY-GNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+...+|+-|+++|.|-+|++|+...+ -|...+..|...+.++++ ..+ ..+
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~---------------------------~~l 132 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN---------------------------NEL 132 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC---------------------------cee
Confidence 55667889999999999999999877 567777777766665555 222 678
Q ss_pred EEEEECCCeEEEEEccCCeE--E--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058 89 LVLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~--~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
+++|+-|+.|.+||+.++.. + ..+..|+..+|++++.++.|..|++|+..+.+++||.++++.+..+++|
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence 99999999999999997722 2 1222378889999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
...|.++..++||+.+++++ |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|+++....
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~- 290 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKS- 290 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchhh-
Confidence 99999999999999999998 9999999999999999999999999999999999999988 6999999999986322
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
..+..-+++...+ ... ....-+-+++.|+.|+-|..+
T Consensus 291 -tlick~daPv~~l--~~~------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 -TLICKEDAPVLKL--HLH------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred -eEeecCCCchhhh--hhc------cccCCceeeeccccceecCCc
Confidence 1333333332222 111 122334677889999999754
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.3e-20 Score=165.45 Aligned_cols=241 Identities=13% Similarity=0.215 Sum_probs=174.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
++.|++.|+++|+|+.|++|+|||... -.+...++.|.+.+..+.|.++ . =
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP------------------E-------f 72 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP------------------E-------F 72 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc------------------c-------c
Confidence 459999999999999999999999643 3467777878777776666655 1 0
Q ss_pred CcEEEEEECCCeEEEEEccCC-------eE-EEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC------
Q 008058 86 SSLLVLGTGGGDVLALAVSAG-------QL-KWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG------ 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~-------~~-~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~------ 149 (579)
|..+++++.|+++.||.-... +. ....+....+.|+++.|.|. |-.+++++.||.+|||+...-
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 889999999999999986321 11 12233456788999999994 667999999999999986543
Q ss_pred ceeeEee-------cCCCCeeEEEEccC---CCEEEEEC-------CeEEEEECCCC----eeeEEeecCCCCEEEEEEe
Q 008058 150 SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFS 208 (579)
Q Consensus 150 ~~~~~~~-------~~~~~v~~l~~~p~---g~~l~~~~-------g~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~ 208 (579)
.....++ .+..+..|+.|+|. ..+|+.|+ +.++||....+ ..+.++.+|..+|+.++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2222232 24457889999974 46888887 48999976543 3466788999999999999
Q ss_pred cCC----CEEEEEecCCCeEEEEEcCCCc---------------cccceeEEeeecCceeeEeEEecCCcccCCCcEEEE
Q 008058 209 DNG----KYVLSSAVGERYIALWRTDGVK---------------KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 209 ~~~----~~l~s~s~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (579)
|+- ..+++++ .|| |+||.+.... ......+..+..|...+-.+.|+ -.|..|++
T Consensus 233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-----mtGtiLsS 305 (361)
T KOG2445|consen 233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN-----MTGTILSS 305 (361)
T ss_pred cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe-----eeeeEEee
Confidence 962 3466665 799 9999987421 01112233344455444555665 68899999
Q ss_pred EEcCCeEEEEECC
Q 008058 270 ISETGVCYIWYGQ 282 (579)
Q Consensus 270 ~~~dg~i~iwd~~ 282 (579)
.+.||+|++|...
T Consensus 306 tGdDG~VRLWkan 318 (361)
T KOG2445|consen 306 TGDDGCVRLWKAN 318 (361)
T ss_pred cCCCceeeehhhh
Confidence 9999999999754
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=169.03 Aligned_cols=262 Identities=18% Similarity=0.240 Sum_probs=182.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc-ccccccCccceEEeeec----ccccccccC
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSV----DRKKKRKLG 85 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~----~~~~~~~~~ 85 (579)
+.|||||..|++-+.|..+++|++-..-....- ..+. .+.... ..-.....+-..+|-+. +|.
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~---~~~~---~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~------ 122 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DGPL---NFSKHLSYRYQEGETVYDYCWYSRMKSDQPS------ 122 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCC---CCcc---ccccceeEEeccCCEEEEEEeeeccccCCCc------
Confidence 489999999999999999999997422110000 0000 000000 00011223345566542 233
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEec-CCCCC---CEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCcee--eEee--
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPG---GVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLL--GKFR-- 156 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~---~V~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~--~~~~-- 156 (579)
..++++.+.+.-|++||.-+|+....+. -.|.. ...+++|+|||.+|++| ....|++||+ +.|+.. ....
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence 7788888889999999999998765442 12333 34689999999999887 5678999999 555422 2211
Q ss_pred ---cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 157 ---ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 157 ---~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
+..+-+.|++|+|-. +.++.|+ .++-||.-..+.++..+.+|.+.|+.+.|.++|+.|++++..|..|-.||++
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 235678999999954 5888888 6888888888889999999999999999999999999999889999999999
Q ss_pred CCccccceeEEeeecCce-eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC-ceeecccCC
Q 008058 231 GVKKQSASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKA 292 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 292 (579)
..... ++.+..+.. .-.-+.|. ..|.|++|++|+.||.|++||+++ ++.......
T Consensus 282 ~~~~p----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 282 YSRDP----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred hccch----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence 86533 333433322 33334454 238999999999999999999987 554443333
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.2e-21 Score=179.26 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=165.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---------CCceeeEee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~~~~~ 156 (579)
+.+++.|+-.|.|++|.+.+|..+..+ .+|-..|+++.|+.||.+|++|+.||.|.+|++. +-++++.|.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 888888889999999999999998655 7899999999999999999999999999999864 235788899
Q ss_pred cCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 157 ASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 157 ~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.|.-+|+.+...+. ...+++++ .++++||+..+..+.++. ...++++++.+|-++.++.|+ .+|.|.+.++...
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL 249 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence 99999999998865 35788887 899999999999988886 678899999999999998887 7999999887654
Q ss_pred cccc-----------ceeEEeeecCc--eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 233 KKQS-----------ASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 233 ~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
...+ ......+..+. ..++|.+.+ -||..|++|+.||++.|||+.+.+.+++..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 3111 11122222333 478899988 899999999999999999999988887765
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.1e-20 Score=183.46 Aligned_cols=334 Identities=13% Similarity=0.116 Sum_probs=239.5
Q ss_pred ceEEEEcc-CCC-EEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 8 DILTSFSP-ALD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 8 ~~~~~fs~-dg~-~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|+++.| ++. .+|.|+.+..|.++.-..+ +.+.++.+|...+.++.|+.. ++
T Consensus 148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~-------------------- 204 (764)
T KOG1063|consen 148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG-------------------- 204 (764)
T ss_pred hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence 45667777 344 4455666777888764433 567788899988888888765 11
Q ss_pred cCCcEEEEEECCCeEEEEEccCCe------------------------EEE------EecCCCCCCEEEEEEccCCCEEE
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY 133 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~------------------------~~~------~~~~~h~~~V~~l~~~~~~~~l~ 133 (579)
+.-++++++.|..|+||.+.-+. .+. .+..||.+.|+++.|+|.+..|+
T Consensus 205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 14578889999999999986433 011 22359999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCcee-------eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---eeeEEeecCCCC
Q 008058 134 SAGADGMVCEIDPLTGSLL-------GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (579)
Q Consensus 134 s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~ 201 (579)
+++.|.++.+|...+..-+ ....+........-|+|+++.+++-+ |..++|..+.. .....+.||...
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 9999999999987654211 12223344788999999999888877 99999983332 234456899999
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--------------------c-------------------------
Q 008058 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--------------------S------------------------- 236 (579)
Q Consensus 202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~--------------------~------------------------- 236 (579)
|+.++|+|.|.+|++.| .|.+-+++-.-..+.. .
T Consensus 364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred ceeeeecCCCCEEEEec-cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence 99999999999999998 6988887744311000 0
Q ss_pred ----------------------------ceeEE--------------------------------------------eee
Q 008058 237 ----------------------------ASCVL--------------------------------------------AME 244 (579)
Q Consensus 237 ----------------------------~~~~~--------------------------------------------~~~ 244 (579)
.+..+ .+-
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 00000 001
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
.|+..+.+++.+ |+|+++|+++... .|++|+..+-.+.+.++.+...+.... |+|+++ ++++++.
T Consensus 523 GHGyEv~~l~~s-----~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~-FSpdg~----~LLsvsR 592 (764)
T KOG1063|consen 523 GHGYEVYALAIS-----PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA-FSPDGR----YLLSVSR 592 (764)
T ss_pred cCceeEEEEEec-----CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE-ECCCCc----EEEEeec
Confidence 223344455555 8999999997643 689999988888887777777766655 899999 9999999
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
|....++.. ..+....--|...+.|+--|+.+.|+||+.++ +|+|.|+++++|...+
T Consensus 593 DRt~sl~~~----~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 593 DRTVSLYEV----QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPD 649 (764)
T ss_pred CceEEeeee----ecccchhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccC
Confidence 876655442 11122222255577899889999999999998 9999999999998853
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-19 Score=175.83 Aligned_cols=242 Identities=12% Similarity=0.170 Sum_probs=190.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+++| .++|||.+.+.||.+-.||.|.||++..+-+...+ ..|+.+..+..++|..
T Consensus 24 ~Ps~I--~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------ 79 (691)
T KOG2048|consen 24 KPSEI--VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------ 79 (691)
T ss_pred eccce--EEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc------
Confidence 35788 67799999999999999999999999876544322 2256677888999984
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~ 159 (579)
+..|++.+.+|.|.-||+.+++....+ ....+.|++++.+|.+..++.|+.||.++.++...++.... +.-.+
T Consensus 80 ----~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 80 ----GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred ----CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 677999999999999999999988666 45778999999999999999999999888888777765443 44456
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
+.|.+++|+|++..+++|+ |.|++||...+..+.... +...-|.++.|-.++ .++++- .-|+|.+||.
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD-S~G~V~FWd~ 232 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD-SAGTVTFWDS 232 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-CCceEEEEcc
Confidence 7999999999999999998 889999999987765221 123347788888776 456664 5899999999
Q ss_pred CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
..+... .....+...+.+++.. +++.++++++.|+.|.-|...+.
T Consensus 233 ~~gTLi-----qS~~~h~adVl~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 233 IFGTLI-----QSHSCHDADVLALAVA-----DNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cCcchh-----hhhhhhhcceeEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence 998754 2333333444455555 78899999999999988876555
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.6e-20 Score=162.20 Aligned_cols=235 Identities=17% Similarity=0.174 Sum_probs=175.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+..|++|+.|+.|+|+....+.. ....+.||.+||+.++|.. .|..|++|+.||.|.+|.-..|+ ....+..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 78899999999999999986542 2233479999999999965 79999999999999999977763 344577899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC---eeeEEeecCCCCEEEEEEecC---C-----------CEEEEEe
Q 008058 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA 218 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~-----------~~l~s~s 218 (579)
..|++++|.|. |-.|++++ |.|.|.+.++. ...+....|.-.|+++.|.|. | +.|+++|
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99999999996 55677776 99999888754 223445789999999999986 4 5689998
Q ss_pred cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee
Q 008058 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (579)
.|+.|+||+...+.-. .-.++..+...++-+++.+..- --..+|+++++||++.||-.+ .+.
T Consensus 183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~-~e~------------ 244 (299)
T KOG1332|consen 183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKD-EEY------------ 244 (299)
T ss_pred -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEec-Ccc------------
Confidence 6999999999887422 2234667777778788873211 123689999999999999643 110
Q ss_pred ecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
...+ ...++ .....++++.||+.|..|+++++ |+.+++|.
T Consensus 245 ------e~wk------------------------------~tll~---~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwk 284 (299)
T KOG1332|consen 245 ------EPWK------------------------------KTLLE---EFPDVVWRVSWSLSGNILAVSGG-DNKVTLWK 284 (299)
T ss_pred ------Cccc------------------------------ccccc---cCCcceEEEEEeccccEEEEecC-CcEEEEEE
Confidence 0001 00000 11236899999999999966665 99999995
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=173.73 Aligned_cols=253 Identities=18% Similarity=0.203 Sum_probs=173.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE---EEeccccccccc-cccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
|+|+|.|+.|..|.|||+.--..+ ..+-...+.... .........+|.+ .+-.+.|.... .+.|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n~~~--------~nVLaSg 262 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWNRNF--------RNVLASG 262 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhcccc--------ceeEEec
Confidence 689999999999999997632211 111100000000 0000000113322 22244454432 6789999
Q ss_pred ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEEEEccC
Q 008058 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~ 170 (579)
+.|.+|++||+.++++...+ ..|.+.|.++.|+| ...+|++|+.|++|.+.|++.-. .-..++ ..+.|-.++|.|.
T Consensus 263 saD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPH 340 (463)
T ss_pred CCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCC
Confidence 99999999999999998666 46999999999999 45679999999999999998432 222333 3568999999997
Q ss_pred CCEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 171 GKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 171 g~~l~~~~---g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
....+.++ |+++-+|+|.. +++.+++.|.++|+++++++....++++++.|+.|++|++...... .+......
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~~~~~ 417 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKEHSFK 417 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccccccc
Confidence 66544443 99999999975 8999999999999999999887766666668999999999876543 11111111
Q ss_pred ceeeEeEEecCCcccCC-CcEEEEEEcCCeEEEEECCCceeec
Q 008058 247 AVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
-..+.|..+. |+ ..+++.|+..+.++|||+.+...++
T Consensus 418 ~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 418 LGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccceeecccC-----CCcceEEEecCccceEEEeecccChhHH
Confidence 1123444444 44 3567778888899999988776543
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2e-19 Score=176.42 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=188.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.|..+ +|++ |..|.+.+.+|.|.-||+.+++....+....+.+.+.+.++.
T Consensus 70 rsIE~L--~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------- 121 (691)
T KOG2048|consen 70 RSIESL--AWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------- 121 (691)
T ss_pred CceeeE--EEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-------------------------
Confidence 456455 8985 456778888999999999999999988877777766665555
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----c
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~ 157 (579)
+..+++|+.||.++.++...++.... .+....+.|.++.|+|++..+++|+.||.|++||...+..++... .
T Consensus 122 --~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 122 --NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred --cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 77899999999888888888886533 344566899999999999999999999999999999998766221 1
Q ss_pred ---CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 158 ---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 158 ---~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
...-|.++.|-.++ .+++|+ |+|.+||...+..+..+..|...|.+++..+++.+++++| .|+.|..|...+.
T Consensus 200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 12256777777554 666776 9999999999999999999999999999999999999998 6999999988777
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
+.. ........++...+.+++.. + ..+++|+.|+.+.+-....
T Consensus 278 ~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence 542 22222334555555555554 3 4899999999998876544
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.7e-21 Score=170.24 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=183.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008058 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~ 197 (579)
..|+.|++.|.++++|+.||.|.+||+.+...-+.+.+|..+|++++||+||+.|++++ ..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 78999999999999999999999999999998889999999999999999999999999 899999999999988886
Q ss_pred CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC---ceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 198 h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
..++|....|+|-.+..+.++--+..-.+-++..++.. ++..... ...-++..|. +.|++|++|+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~fd-----r~g~yIitGtsKG 175 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVFD-----RRGKYIITGTSKG 175 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccccccccccccc-----CCCCEEEEecCcc
Confidence 78999999999965433333334555566666553311 1121111 1112223454 8999999999999
Q ss_pred eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCC-ceeEEEe--cCCCC
Q 008058 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK-PSFQKIL--VNSGE 351 (579)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~--~h~~~ 351 (579)
.+.+||.++.+.+..++-......-...++..+. .++.-+.|..+|.++..-+...|.... ...+++. ..+-.
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 9999999999888766544411111112344444 777788888888877663333332211 1111111 13335
Q ss_pred cEEEeecCCcceeeccccceecccceee--eeceeeeccCC
Q 008058 352 DINLNCSQDGVLLPMSQSLLKSKRGRYV--QNRVTALDRAN 390 (579)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~--~~~~~~~~~~~ 390 (579)
..+++||.||.|++++.+.-+.+++|+- ++.++.+.+..
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 7788999999999777777899999985 33466665444
No 142
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-20 Score=168.12 Aligned_cols=188 Identities=14% Similarity=0.210 Sum_probs=161.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC------CC-----------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT----------- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~------~~----------- 148 (579)
...+.+++.|.+-+||.+++|.|+.++ .||.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 457888999999999999999999877 689999999999999999999999999999962 11
Q ss_pred -------------------C----ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE
Q 008058 149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR 203 (579)
Q Consensus 149 -------------------~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~ 203 (579)
+ .++..+.+|...|.+..|-..|+.+++++ .+..+||++++.++..+.||....+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 13456788999999999999999999999 8999999999999999999999999
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
.++-+|..+.+++++ .|.+.++||++..- . .+..+..+...+..+.|. .+..+++|++|.+|++||+++
T Consensus 319 HcstHptQrLVvTsS-rDtTFRLWDFReaI-~---sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAI-Q---SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccCCcceEEEEec-cCceeEeccchhhc-c---eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence 999999988888776 79999999998432 1 344556666677777785 567899999999999999987
Q ss_pred ce
Q 008058 284 IE 285 (579)
Q Consensus 284 ~~ 285 (579)
.+
T Consensus 388 MR 389 (481)
T KOG0300|consen 388 MR 389 (481)
T ss_pred cc
Confidence 64
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=7.2e-20 Score=171.59 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=160.4
Q ss_pred cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCc
Q 008058 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATH-GSCIYSAGADGM 140 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~ 140 (579)
...+++++|+|..+ ..++++|...|+|-+||+.+.+. -..+...|..+|.++.|+|. ...+++.+.||+
T Consensus 186 ~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 186 DRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 56788999999873 37899999999999999953221 12334679999999999994 456999999999
Q ss_pred EEEEeCCCCce--eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEE
Q 008058 141 VCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 141 v~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~ 215 (579)
|+.-|+..+.. +.........+..+.|+.+...++.++ |...+||.+++.. ...+.-|...|.+++++|...+++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999986633 333333445788899998888777777 9999999998655 666777889999999999877655
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
++++-|++.+|||++....... .....-.+...+..++|+ |.+-.|++.+.|..|+|||..
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeecc
Confidence 5555899999999998654421 233344556678888998 888889999999999999973
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.3e-19 Score=165.96 Aligned_cols=245 Identities=15% Similarity=0.192 Sum_probs=187.4
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..|| -+++|.|+|. .+++++...-++.||+.+++.... .... |+.. ..+.-+..++.
T Consensus 257 ~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~-~~~~--------------g~e~---~~~e~FeVShd-- 314 (514)
T KOG2055|consen 257 KFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL-KPPY--------------GVEE---KSMERFEVSHD-- 314 (514)
T ss_pred cCcc--ceeeecCCCceEEEecccceEEEEeeccccccccc-cCCC--------------Cccc---chhheeEecCC--
Confidence 4688 5559999998 888999889999999988775432 1111 1110 01111111111
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 160 (579)
+++|++.+..|.|.+....+++.+..+. -.+.|.+++|+.+++.|++++.+|.|++||++...+++.|....+
T Consensus 315 ----~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 315 ----SNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ----CCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 7899999999999999999999886663 468899999999999999999999999999999999999885443
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCC
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~ 231 (579)
.=++++.+++|.++|+|+ |.|.|||..+ .+++.++..-...|+++.|+||++.|+.++. .+..+++-.+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 346788889999999999 9999999653 4667777667788999999999999887763 355788888776
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
-..-+ ..-+...+-..++|+.|+ |.|.++|.|..+|++.+|.+.
T Consensus 469 ~TVFs--NfP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFS--NFPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeec--cCCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence 54221 111123445567899998 999999999999999999763
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=175.85 Aligned_cols=263 Identities=15% Similarity=0.095 Sum_probs=194.3
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~ 146 (579)
.+.++|.+. +.+|++++.||.|++|+.... +.. ....-+...|.+++. ++.+|++|+.+++|..|.+
T Consensus 16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 556666664 789999999999999998776 333 222336778888876 4558999999999999999
Q ss_pred CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
.+++.-..+....-++.+++++.+|++++.|+ -.|++-++.+......+.+|.++|.++.|+|++.+|++++ .||.|
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 88865444444556899999999999999999 6899999999888999999999999999999999999987 69999
Q ss_pred EEEEcCCCccccc-eeEE-eeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEe-eec
Q 008058 225 ALWRTDGVKKQSA-SCVL-AMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSE 300 (579)
Q Consensus 225 ~vwd~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~ 300 (579)
++|++.++..... ..+. ..+.. ........|+ |+|..+++.+.|+.|++|+..+.+....+.+..... .+.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 9999998764310 0000 01111 4455667776 999999999999999999999888766554332221 233
Q ss_pred ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCccee
Q 008058 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (579)
..|+|.|+ +|+++..+|.+-+|+- .. .+. ......|.+++|-|++.-+
T Consensus 238 ~~wsPnG~----YiAAs~~~g~I~vWnv-------~t----~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 238 LQWSPNGK----YIAASTLDGQILVWNV-------DT----HER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEcCCCc----EEeeeccCCcEEEEec-------cc----chh-ccccceeEEEecCCCCCee
Confidence 34788888 8888888664443331 11 111 1223458888888888776
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=7e-19 Score=165.05 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=198.9
Q ss_pred CCcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeec
Q 008058 3 SSNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
..+| .+++|+|.. +.+|+|..-|+|-+||+.+.+ -+..+..|..++ +++.+.|.
T Consensus 186 ~~Ri--t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~V------------------s~l~F~P~ 245 (498)
T KOG4328|consen 186 DRRI--TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPV------------------SGLKFSPA 245 (498)
T ss_pred ccce--EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccc------------------cceEecCC
Confidence 4677 667999966 488889899999999995222 233444444444 45555555
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-ee
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LG 153 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~ 153 (579)
+ ...+++.+.||+|++-|++.+... ... ........++.|+.+...++.+..=|...+||++++.. ..
T Consensus 246 n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 246 N--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred C--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence 4 667999999999999999876542 222 12345678889999888888898888999999997754 55
Q ss_pred EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
.+.-|...|++++++|... ++++++ ++.+|||++.-.. +.....|...|.+..|+|++-.|++.+ .|..|+|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv 395 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRV 395 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceEE
Confidence 6777888999999999655 566777 8999999986322 233356999999999999988888887 7999999
Q ss_pred EEcCC-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc-cCCceEEeeecccCc
Q 008058 227 WRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSEDVNS 304 (579)
Q Consensus 227 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~ 304 (579)
||..- +... .....+.|+...-....--...++|+..+|++|..-..|-|||...++.+.. +.|....+.+...+-
T Consensus 396 ~dss~~sa~~--~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 396 FDSSCISAKD--EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred eecccccccC--CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence 99841 0100 1223344544332222111233449999999999999999999999986665 555555666666555
Q ss_pred ccccccchhhhhccc
Q 008058 305 KSQKSATAAIFAAKL 319 (579)
Q Consensus 305 ~~~~~~~~~i~~~~~ 319 (579)
|-.. .+++|+.
T Consensus 474 P~~~----~~~aG~~ 484 (498)
T KOG4328|consen 474 PMRD----TLAAGGN 484 (498)
T ss_pred cccc----ceeccCC
Confidence 5544 4555544
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.3e-18 Score=154.07 Aligned_cols=225 Identities=12% Similarity=0.129 Sum_probs=169.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+|| ++|+|.++ ..+++|+-||.|+.+|+.++.... +-.|.. .+.|+...+.
T Consensus 53 ~~~pl--L~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~~------------------~i~ci~~~~~----- 105 (323)
T KOG1036|consen 53 HGAPL--LDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDE------------------GIRCIEYSYE----- 105 (323)
T ss_pred cCCce--eeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCCC------------------ceEEEEeecc-----
Confidence 35899 99999974 468899999999999999887543 333443 3444444432
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--ST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~ 159 (579)
...+++|+.|+.|++||+........+. ....|.++.. .|+.|+.|+.|..|.+||+++.......+. -+
T Consensus 106 ----~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 106 ----VGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred ----CCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 5679999999999999999755554442 4458998887 467899999999999999998765443322 22
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCC----eeeEEeecCC---------CCEEEEEEecCCCEEEEEecCCCeE
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~----~~~~~~~~h~---------~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
-.+.|+++-|++.-+++++ |.|.+=.+... +....|+.|. -||++|+|+|-...|+++| .||.|
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V 256 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIV 256 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceE
Confidence 3789999999888888887 88887666554 3344566664 3699999999988999998 59999
Q ss_pred EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
.+||+...+.. ..+..-...+....|+ .+|..||+++.
T Consensus 257 ~~Wd~~~rKrl-----~q~~~~~~SI~slsfs-----~dG~~LAia~s 294 (323)
T KOG1036|consen 257 NIWDLFNRKRL-----KQLAKYETSISSLSFS-----MDGSLLAIASS 294 (323)
T ss_pred EEccCcchhhh-----hhccCCCCceEEEEec-----cCCCeEEEEec
Confidence 99999987754 2333445567788887 89999999875
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.4e-18 Score=156.45 Aligned_cols=296 Identities=19% Similarity=0.218 Sum_probs=199.0
Q ss_pred CcccceEEEEcc-----CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 4 ~~V~~~~~~fs~-----dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.|| .-++|++ .-+.+|+++. .++.+|+....--+..++.... .......-.++|.-...
T Consensus 39 ~~I--~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D-------------~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 39 KPI--FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYAD-------------EDHDESFYTCSWSYDSN 102 (385)
T ss_pred Ccc--ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccC-------------CCCCcceEEEEEEecCC
Confidence 567 4458875 2346777775 4788998754332222221111 11122333456765443
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEe--
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~-- 155 (579)
. +..++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. +++++++.|..|++|++++..++..|
T Consensus 103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 2 2668899999999999999999998666 6899999999999965 67999999999999999999998886
Q ss_pred -ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee------e----------------EEe------ecCCCCEEE
Q 008058 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------M----------------QKF------SGHPGAVRF 204 (579)
Q Consensus 156 -~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~------~----------------~~~------~~h~~~v~~ 204 (579)
.+|.+.|.++.|+++|.++++++ .+|++|++...+. . ..| .-|...|-+
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 46888999999999999999998 8999999973211 0 011 135555666
Q ss_pred EEEecCCCEEEEEecCCCeEEEEEcCC-Ccc-----cccee---EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 205 MTFSDNGKYVLSSAVGERYIALWRTDG-VKK-----QSASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 205 l~~~~~~~~l~s~s~~d~~i~vwd~~~-~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
+.|- |.++++-+ -++.|..|..-. .+. ....+ ...+.-+...+..+.| .++|-++.||.|.+.|.
T Consensus 257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf---~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF---AFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE---eecHHHHHHhhccCCCc
Confidence 6665 56888877 588999998722 111 11111 1122222222222222 24478899999999999
Q ss_pred EEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008058 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (579)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (579)
+++||+++.+..... ... + ......|.+.
T Consensus 331 v~vwdL~~~ep~~~t-----tl~---------~-------------------------------------s~~~~tVRQ~ 359 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCT-----TLT---------H-------------------------------------SKSGSTVRQT 359 (385)
T ss_pred EEEEECCCCCCccCc-----eEE---------e-------------------------------------ccccceeeee
Confidence 999998776542100 000 0 0011257888
Q ss_pred eecCCcceeeccccceecccceee
Q 008058 356 NCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+||.||.+| +-...|+++--|+.
T Consensus 360 sfS~dgs~l-v~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSIL-VLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEE-EEEeCCCcEEEEEe
Confidence 899999999 66666999888875
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.7e-18 Score=149.83 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=174.6
Q ss_pred CcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC---------Cc
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT---------GS 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~---------~~ 150 (579)
|+.+++|+.|++|+|||..... +.... +.|.+.|..+.|.+ -|+.+++|+.|+++.||.=.. ..
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv 103 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV 103 (361)
T ss_pred CceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence 8889999999999999975443 22222 57999999999965 588999999999999997421 12
Q ss_pred eeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC------eeeEEee-------cCCCCEEEEEEecC---
Q 008058 151 LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH------KKMQKFS-------GHPGAVRFMTFSDN--- 210 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~------~~~~~~~-------~h~~~v~~l~~~~~--- 210 (579)
...++......|+.+.|.|. |-.+++++ |.++||+.-.. .+...+. .+..+..|+.|+|.
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 33456666779999999994 66788877 99999987543 2222222 46677889999874
Q ss_pred CCEEEEEecCC-----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 211 GKYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 211 ~~~l~s~s~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.++|+.++ .+ +.++||....+... ...+..+..+...+..++|.+..- ..-..||+++.|| |+||++....
T Consensus 184 ~p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 184 EPLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-RSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred CceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-CceeeEEEeecCc-EEEEEEeecc
Confidence 45677776 33 37899987665422 234455667777888888874321 1346789999999 9999875432
Q ss_pred eecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008058 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (579)
.--..+ .+.++...+ + ........+..|.++|+++.|.-.|..|
T Consensus 260 s~i~~e---------------------e~~~~~~~~-----~---------l~v~~vs~~~~H~~~VWrv~wNmtGtiL- 303 (361)
T KOG2445|consen 260 SAIEEE---------------------EVLAPDLMT-----D---------LPVEKVSELDDHNGEVWRVRWNMTGTIL- 303 (361)
T ss_pred chhhhh---------------------cccCCCCcc-----c---------cceEEeeeccCCCCceEEEEEeeeeeEE-
Confidence 100000 001111100 1 0111122455799999999999999999
Q ss_pred ccccceecccceee
Q 008058 366 MSQSLLKSKRGRYV 379 (579)
Q Consensus 366 ~s~s~d~~~~~w~~ 379 (579)
.|.|.||.+|+|..
T Consensus 304 sStGdDG~VRLWka 317 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKA 317 (361)
T ss_pred eecCCCceeeehhh
Confidence 99999999999976
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=1.6e-18 Score=168.46 Aligned_cols=122 Identities=21% Similarity=0.403 Sum_probs=95.4
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.-|.++ .|+| +..+||+|+.|..|+||.+-.|.... +.. +...-++....+.|+.+++.
T Consensus 79 ~d~VtDl--~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LSa-----------pe~~~g~~~~~vE~l~fHpT----- 139 (1012)
T KOG1445|consen 79 GDQVTDL--GFSPFADELLATCSRDEPVKIWKLPRGHSQK-LSA-----------PEIDVGGGNVIVECLRFHPT----- 139 (1012)
T ss_pred cceeecc--CccccchhhhhcccCCCeeEEEecCCCcccc-cCC-----------cceeecCCceEEEEeecccC-----
Confidence 4456556 8999 45589999999999999987553321 111 11122555777788888876
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 148 (579)
..-|+..+..|.+++||+.+++....+ .+|...|.+..|+.||..+++++.|..|+|||.+.
T Consensus 140 ----aDgil~s~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 140 ----ADGILASGAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ----cCceEEeccCceEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 344777788899999999999988666 68999999999999999999999999999999863
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=7.4e-18 Score=159.44 Aligned_cols=286 Identities=13% Similarity=0.155 Sum_probs=198.1
Q ss_pred cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe--EEEEEccC
Q 008058 28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSA 105 (579)
Q Consensus 28 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~~ 105 (579)
.+++||.........+-.+.. ......+.|.. .++|++++..|. |++|.-..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~g 66 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKDG 66 (673)
T ss_pred ceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEecccC
Confidence 689999876554444432221 11244566755 344666666655 77886433
Q ss_pred C--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeE
Q 008058 106 G--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQL 181 (579)
Q Consensus 106 ~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i 181 (579)
. +.. .+.......-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++....+||+++ |.|
T Consensus 67 ~~~~Vp-~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdi 145 (673)
T KOG4378|consen 67 KTPEVP-RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDI 145 (673)
T ss_pred CCCccc-eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcE
Confidence 2 221 11111112334554445568999999999999999997777888999999999999999999999998 899
Q ss_pred EEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcc
Q 008058 182 KTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV 260 (579)
Q Consensus 182 ~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (579)
.|..+.++....+|... ...|.-+.|+|..+++++..+++|.|.+||+...... .. ....|......+||++
T Consensus 146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~-~~~~HsAP~~gicfsp--- 218 (673)
T KOG4378|consen 146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FH-ASEAHSAPCRGICFSP--- 218 (673)
T ss_pred EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cc-hhhhccCCcCcceecC---
Confidence 99999999888788644 3456689999999988887778999999999887644 22 2334555667778873
Q ss_pred cCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCc
Q 008058 261 DDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKP 340 (579)
Q Consensus 261 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~ 340 (579)
.+...|++.+.|..|++||....+....+.... .....+ |++++. ++++|+..|.++.+| -.....
T Consensus 219 -sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstva-f~~~G~----~L~aG~s~G~~i~YD-------~R~~k~ 284 (673)
T KOG4378|consen 219 -SNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTVA-FSECGT----YLCAGNSKGELIAYD-------MRSTKA 284 (673)
T ss_pred -CccceEEEecccceEEEeecccccccceeeecC-Ccceee-ecCCce----EEEeecCCceEEEEe-------cccCCC
Confidence 356788999999999999987654433221111 111122 677777 788888866444432 234455
Q ss_pred eeEEEecCCCCcEEEeecCCc
Q 008058 341 SFQKILVNSGEDINLNCSQDG 361 (579)
Q Consensus 341 ~~~~~~~h~~~v~~~~~s~dg 361 (579)
.......|...|.+++|-|--
T Consensus 285 Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 285 PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEeeecccceeEEEeeecc
Confidence 566778899999999998875
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.4e-18 Score=157.39 Aligned_cols=205 Identities=14% Similarity=0.164 Sum_probs=158.4
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE--------------------EEecCCCCCCEEEEEEccC
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--------------------WRLSDCHPGGVSAISFATH 128 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--------------------~~~~~~h~~~V~~l~~~~~ 128 (579)
-|++|.....+ ....++++|+|+.+..|.|||+.--..+ .....+|+..|.++.|+.+
T Consensus 177 LC~ewld~~~~--~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 177 LCIEWLDHGSK--SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred hhhhhhhcCCC--CCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 57788765111 1112889999999999999998621100 0012368889999999875
Q ss_pred C-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeee-EEeecCCCCEE
Q 008058 129 G-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVR 203 (579)
Q Consensus 129 ~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~-~~~~~h~~~v~ 203 (579)
- +.|++||.|.+|++||+.+|++..++..|.+.|.++.|+|. ..+|++|+ +++.+.|.+..... ..++ ..+.|-
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VE 333 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVE 333 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceE
Confidence 4 45899999999999999999999999999999999999995 56778888 99999999953222 2222 457899
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
.++|.|.....+.++.+||+|+-+|++... .+++++..|...+++++++. ....++++++.|+.+++|++..
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEeecC
Confidence 999999877655556689999999999875 26788888888888888873 3557899999999999998754
Q ss_pred c
Q 008058 284 I 284 (579)
Q Consensus 284 ~ 284 (579)
.
T Consensus 406 ~ 406 (463)
T KOG0270|consen 406 D 406 (463)
T ss_pred C
Confidence 3
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.6e-18 Score=154.70 Aligned_cols=279 Identities=11% Similarity=0.115 Sum_probs=185.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceee--EeecCC-C
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLG--KFRAST-K 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~-~ 160 (579)
.+.++++..+|.|++||..+++.+..+ +++...++.+.|.. ....+.+|+.||+|++||++...... .+..+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 467999999999999999999888666 67888999999977 45679999999999999999765433 345555 4
Q ss_pred CeeEEEEccCCCEEEEEC------CeEEEEECCCCee-eEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~-~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+..|++.+-.++++++|. -.+.+||++..+. +..+ ..|...|+++.|+|...-++.+|+-||.|.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 778888877888898887 3799999998765 5554 5799999999999976644444457999999999876
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee-------e---ccc
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-------S---EDV 302 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~---~~~ 302 (579)
.... .....-.....+..+.|. .+.-+.|.+-+..++..+|+++.+.............. + .+.
T Consensus 199 ~EeD--aL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 199 NEED--ALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred cchh--hHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 4321 112222334445555554 13445799999999999999998875433322211000 0 000
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeC---CCCCceeEEEec-CCCCcEEEeecCCcceeeccccceeccccee
Q 008058 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG---LLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.++... .. ..+++...+ .+.++..-. .......-.+.+ |..-|.++.|...+.++ .||++|+.+..|.
T Consensus 273 ~~~~~~-~~-~~l~g~~~n-----~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 273 HSPGDK-DT-CALAGTDSN-----KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQAWK 344 (376)
T ss_pred ccCCCc-ce-EEEeccccC-----ceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee-eccCCCceEEEEe
Confidence 111111 01 111111111 222222111 111122223444 66568888898899999 9999999999998
Q ss_pred e
Q 008058 379 V 379 (579)
Q Consensus 379 ~ 379 (579)
.
T Consensus 345 ~ 345 (376)
T KOG1188|consen 345 V 345 (376)
T ss_pred c
Confidence 6
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=3.6e-18 Score=153.85 Aligned_cols=238 Identities=12% Similarity=0.171 Sum_probs=179.6
Q ss_pred eEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 9 ILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 ~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
..|+|+-| ..++|.|+.-|.|+|.|+.++++...+.+|...++.+.+.|.
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-------------------------- 146 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-------------------------- 146 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------
Confidence 34555543 248999999999999999999999999999999988877766
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee---------
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG--------- 153 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--------- 153 (579)
..+++++++.|..|++|++++..++..+ ..+|.+.|.++.|+++|.+|++|+.|.++++|++...+...
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 2678999999999999999999988655 36899999999999999999999999999999997321100
Q ss_pred -------------------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC-CCCe-------------eeEEeecC
Q 008058 154 -------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-SDHK-------------KMQKFSGH 198 (579)
Q Consensus 154 -------------------~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~-~~~~-------------~~~~~~~h 198 (579)
+-..|...|-|+.|- |+++++-+ +.|..|.. +-.+ .+.++.-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 112255566666665 57888766 89999976 1111 13334444
Q ss_pred CCCEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeE
Q 008058 199 PGAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (579)
Q Consensus 199 ~~~v~~l~~--~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 276 (579)
...|.-+.| .|-++.|+.+. ..|.|.+||++...... ............+.-.+|+ .||..|+..++|++|
T Consensus 305 ~c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTV 377 (385)
T ss_pred ccceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCcc-CceEEeccccceeeeeeec-----ccCcEEEEEeCCCcE
Confidence 455666655 56677888776 79999999999876541 1222333345566777777 899999999999999
Q ss_pred EEEEC
Q 008058 277 YIWYG 281 (579)
Q Consensus 277 ~iwd~ 281 (579)
.-||.
T Consensus 378 wrwdr 382 (385)
T KOG1034|consen 378 WRWDR 382 (385)
T ss_pred EEEEe
Confidence 99984
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.9e-17 Score=146.61 Aligned_cols=259 Identities=14% Similarity=0.115 Sum_probs=182.8
Q ss_pred CcEEEEEECC-------CeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008058 86 SSLLVLGTGG-------GDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 149 (579)
.++|+++..+ ..+.||.+... +++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus 76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es 154 (370)
T KOG1007|consen 76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES 154 (370)
T ss_pred CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence 5566666653 12789998653 233444445667999999999999988875 888999999877
Q ss_pred ce-eeEeec-----CCCCeeEEEEcc--CCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEec
Q 008058 150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 150 ~~-~~~~~~-----~~~~v~~l~~~p--~g~~l~~~~-g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
.. +..+.. +....++-+|+| +|+.+++.+ +++..||+++.+....+ ..|...|..+.|+|+.+++++++.
T Consensus 155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence 65 333322 344677889998 899999888 99999999988776555 478889999999999886655555
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
+||.|++||.+..+. ++..+..+...+.++.|.+ .-.+.|++|+.|..|.+|.......-..+.......-
T Consensus 235 DdgyvriWD~R~tk~----pv~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese- 305 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKF----PVQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE- 305 (370)
T ss_pred CCccEEEEeccCCCc----cccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccccccccccc-
Confidence 899999999998753 4677778888888888872 2457889999999999998654322111110000000
Q ss_pred cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.++.. +... . - -.....++++..|+..|.+++||.-..++++|-|.||.+.+-++
T Consensus 306 ----~e~~d---------seer-~------k-----pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 306 ----SEDED---------SEER-V------K-----PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ----Ccchh---------hHHh-c------c-----cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 00000 0000 0 0 01123455777899999999999999999899999999888766
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.3e-19 Score=184.26 Aligned_cols=286 Identities=15% Similarity=0.178 Sum_probs=196.5
Q ss_pred EEEEccCCC-EEEEEeC----------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 10 LTSFSPALD-YFAICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 10 ~~~fs~dg~-~las~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
..+|||++. ++|+|.. +.++.||.+.-......++.. ..-..+..+..++|.+...
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~-------------~s~~s~~rF~kL~W~~~g~ 77 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV-------------GSLQSSNRFNKLAWGSYGS 77 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc-------------ccccccccceeeeecccCC
Confidence 459999997 7776642 345555544322111111100 0122245677899987653
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccC---Ce---EEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCce
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSA---GQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~---~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~ 151 (579)
+. ..+|+.|..||.|.+||... +. .+.+ ...|.+.|.++.|++... .+++|+.||.|.|||+..-+.
T Consensus 78 ~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t 151 (1049)
T KOG0307|consen 78 HS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLAT-KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET 151 (1049)
T ss_pred Cc-----cceeeccccCCceEEecchhhccCcchHHHhh-hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence 31 35789999999999999876 22 2223 356999999999999655 899999999999999986554
Q ss_pred eeEee--cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCCC-EEEEEecCCC-
Q 008058 152 LGKFR--ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGK-YVLSSAVGER- 222 (579)
Q Consensus 152 ~~~~~--~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~-~l~s~s~~d~- 222 (579)
-.+.. .....|.+++|+.. ..+|++++ |.+.|||++..+.+-.+..|.+ .+..+.|+|+.. .+++++.+|+
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence 44432 13458999999975 45677776 8999999999988888876654 477899999864 4555553444
Q ss_pred -eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecc
Q 008058 223 -YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (579)
Q Consensus 223 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (579)
.|.+||++..... +..+.+|..-+-.+.|+. .|..++++++.|++|.+|+.++++.+..+.. ...++...
T Consensus 232 PviqlWDlR~assP----~k~~~~H~~GilslsWc~----~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv 302 (1049)
T KOG0307|consen 232 PVIQLWDLRFASSP----LKILEGHQRGILSLSWCP----QDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDV 302 (1049)
T ss_pred ceeEeecccccCCc----hhhhcccccceeeeccCC----CCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeee
Confidence 6999999876532 234445555555566651 4559999999999999999999999988765 33334333
Q ss_pred cCcccccccchhhhhccccceecCC
Q 008058 302 VNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
.|++.... .+++++++|.+.++
T Consensus 303 ~w~pr~P~---~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 303 QWCPRNPS---VMAAASFDGKISIY 324 (1049)
T ss_pred eecCCCcc---hhhhheeccceeee
Confidence 35554332 78889998865543
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=4.4e-18 Score=150.93 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=194.4
Q ss_pred CcEEEEEECCCeEEEEEccCCe------------EE--EEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQ------------LK--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~------------~~--~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~ 150 (579)
++++++|..||.|.+||++... ++ ..-..+|.-.|.++.|-| |...|.+++-|.++++||..+-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 8899999999999999997532 11 111246778899999999 66678889999999999999988
Q ss_pred eeeEeecCCCCeeEEEEccCC--C-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 151 LLGKFRASTKGISCMAVSSDG--K-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g--~-~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
....|+ -.+.|++-+++|-. . ++|+|. -.|++-|+.+|..-.++.||.+.|.++.|+|...+++.+++.||.|+
T Consensus 136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 888887 45678888999843 2 455555 58999999999999999999999999999999998888777999999
Q ss_pred EEEcCCCcc----------ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058 226 LWRTDGVKK----------QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 226 vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
+||++.... .....+.+-..+...+..++|+ .++.++++.+.|..+++|+..+|+......+...
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVWNMESGRNTLREFGPII 289 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEeecccCccccccccccc
Confidence 999986420 0000111122334455667776 8999999999999999999988864322111110
Q ss_pred EeeecccCcccccccchh-hhhccccce-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008058 296 LSSSEDVNSKSQKSATAA-IFAAKLQDI-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (579)
. ..+..... +-++..+-- ...+++.+.+. ...-+.....+.+|...+.+.++.||=+.. .+++.|+.
T Consensus 290 ~---------n~~~~~~~~~~~~~s~vfv~~p~~~~lall-~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~-~tg~~d~n 358 (397)
T KOG4283|consen 290 H---------NQTTSFAVHIQSMDSDVFVLFPNDGSLALL-NLLEGSFVRRLSTHLKRINCAAYRPDFEQC-FTGDMNGN 358 (397)
T ss_pred c---------cccccceEEEeecccceEEEEecCCeEEEE-EccCceEEEeeecccceeeEEeecCchhhh-hccccCCc
Confidence 0 00000000 111111111 11112222221 122234556777898889999999999998 99999999
Q ss_pred ccceee
Q 008058 374 KRGRYV 379 (579)
Q Consensus 374 ~~~w~~ 379 (579)
+..|..
T Consensus 359 i~~w~p 364 (397)
T KOG4283|consen 359 IYMWSP 364 (397)
T ss_pred cccccc
Confidence 999965
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.3e-18 Score=151.15 Aligned_cols=189 Identities=22% Similarity=0.319 Sum_probs=150.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+.+-...++.|+++++.|..|.+|+.+ |+.+..+............+|+ +++
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF 242 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF 242 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence 555667788999999999999999998 8888887655544444444444 999
Q ss_pred EEEEECCCeEEEEEccC---CeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC----C---ceee
Q 008058 89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----G---SLLG 153 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~---~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~---~~~~ 153 (579)
++++.-.-+|++|.+-- |.. +.++ +||.+.|..++|+++...+++.+.||+.++||..- + +.++
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999999842 221 2233 79999999999999999999999999999999752 1 1222
Q ss_pred Ee----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 154 ~~----~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
+. ....+....++++|+|+.|+.+. ..+++|..++++....+ ..|...|++|.|+++|++++++| |+.+++.
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~ 399 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI 399 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence 22 12233445899999999999998 69999999998877666 46899999999999999999986 8999998
Q ss_pred E
Q 008058 228 R 228 (579)
Q Consensus 228 d 228 (579)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.3e-19 Score=184.29 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=183.2
Q ss_pred EEEEccCCCE----EEEEeCCCcEEEEECCC---Ce---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 10 LTSFSPALDY----FAICSGDARIKIWDTLK---GQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 10 ~~~fs~dg~~----las~s~dg~i~vwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++|.+.|.. ||.|..||.|.+||... +. .+..+..|.+.+..+-|++. .
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------------q-- 128 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------------Q-- 128 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------------C--
Confidence 3489888765 88888999999999865 21 34445555555554444433 2
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
++++++|..+|+|.|||+..-+..... .....+.|.+++|+..-. .|++++.+|.+.|||++..+.+-.+..
T Consensus 129 ------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 129 ------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred ------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 779999999999999999876554333 222457899999988544 488889999999999998888877776
Q ss_pred CCC--CeeEEEEccCC-CEEEEEC-----CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEE
Q 008058 158 STK--GISCMAVSSDG-KMLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW 227 (579)
Q Consensus 158 ~~~--~v~~l~~~p~g-~~l~~~~-----g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vw 227 (579)
+.+ .+..++|+|+. ..+++++ -.|.+||++.. .+++++.+|...|.++.|++.+ +++++++ .|+.|.+|
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w 281 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW 281 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence 655 57899999975 3455554 38999999864 5678889999999999999877 6777777 79999999
Q ss_pred EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
+.++++. +..+......+.-+.|++ .+...+++++.||.|.||.+.++..
T Consensus 282 N~~tgEv-----l~~~p~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 282 NPNTGEV-----LGELPAQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred cCCCceE-----eeecCCCCcceeeeeecC----CCcchhhhheeccceeeeeeecCCc
Confidence 9999873 345555556666666762 3456888899999999999877653
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=4.7e-18 Score=160.79 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=169.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
|++......|+++|+..++|+|||++...+...+++|...+..+.|+.. ..+|
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------------------Deyi 136 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------------------DEYI 136 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------------------ccee
Confidence 3344445589999999999999999977777777877766666555544 7889
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
++++..|+|.|..+.++.....+..+....|.-+.|+|..++ |.+++.+|.|.+||+....++.. .+.|..+...|+|
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence 999999999999999988765554444456779999998776 67789999999999987777665 4568899999999
Q ss_pred ccCCCE-EEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 168 SSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+|.... |++.+ ..|.+||.+..+....+. ...|.+.++|.++|.+|+++. ..|.|..||++..+.. +....
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P----v~v~s 290 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP----VAVRS 290 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC----ceEee
Confidence 997654 45555 799999999877776665 567889999999999999887 5899999999987643 44455
Q ss_pred cCceeeEeEEec
Q 008058 245 HPAVFMDCRCID 256 (579)
Q Consensus 245 ~~~~~~~~~~~~ 256 (579)
.+...+.+++|-
T Consensus 291 ah~~sVt~vafq 302 (673)
T KOG4378|consen 291 AHDASVTRVAFQ 302 (673)
T ss_pred ecccceeEEEee
Confidence 556667888886
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1e-17 Score=154.39 Aligned_cols=208 Identities=17% Similarity=0.267 Sum_probs=162.6
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+++|| +.++|+| +.+.+|+||.|.+|.||++-.+.....+. .++.. ..|| ...+..+.|+|.-
T Consensus 80 Ht~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---epvv~-------L~gH-~rrVg~V~wHPtA--- 143 (472)
T KOG0303|consen 80 HTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---EPVVE-------LYGH-QRRVGLVQWHPTA--- 143 (472)
T ss_pred ccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcc---cceEE-------Eeec-ceeEEEEeecccc---
Confidence 46888 6679999 45689999999999999987655433222 11110 1233 3356678888875
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
.+.|++++.|..|.+||+.+|+...++. |.+.|+++.|+.||.+|++++.|..|++||.++++.+..-.+|.+
T Consensus 144 -----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 144 -----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred -----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence 6789999999999999999999876763 999999999999999999999999999999999999988878877
Q ss_pred -CeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 161 -GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 161 -~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
....+.|-.+|.++.+|- .++-+||..+-+. ..++. ..+.|.---|.+|...+..+|-+|+.|+.|.+..
T Consensus 217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 456667888999665554 5899998765432 33343 3455666678899999988998999999999887
Q ss_pred Cc
Q 008058 232 VK 233 (579)
Q Consensus 232 ~~ 233 (579)
..
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.1e-17 Score=150.06 Aligned_cols=311 Identities=12% Similarity=0.086 Sum_probs=205.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+-|+++ .||.++++||+|+.|..+++|+++..-...+-+... +...|....+.|++|...
T Consensus 56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-----------~~~~~H~SNIF~L~F~~~------ 116 (609)
T KOG4227|consen 56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-----------VMEHPHRSNIFSLEFDLE------ 116 (609)
T ss_pred cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-----------eccCccccceEEEEEccC------
Confidence 4667666 999999999999999999999986432111100000 001122245566666654
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeE--eecC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGK--FRAS 158 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~--~~~~ 158 (579)
+..+++|..+++|...|+.+.+.+..... ...+.|+.+..+|-.+.|++.+.+|.|.+||.+... .+.. ....
T Consensus 117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 67799999999999999999988755531 223589999999999999999999999999998654 2222 2223
Q ss_pred CCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCee-eEE------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 159 TKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKK-MQK------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~-~~~------~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
......+.|+|.... |++.+ +-+-+||.+..+. +.. ++.......++.|+|+|..|++.- ....-.+||
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D 272 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFD 272 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEee
Confidence 447788999997664 44555 7899999986532 221 221122346789999999988864 344556788
Q ss_pred cCCCccccceeEEeeecCc------eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058 229 TDGVKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
+.+..+ .++...|.. ..+..++|. +...+++|+.+-.|++|.+.....-..+.
T Consensus 273 ~~S~R~----~V~k~D~N~~GY~N~~T~KS~~F~------~D~~v~tGSD~~~i~~WklP~~~ds~G~~----------- 331 (609)
T KOG4227|consen 273 FISQRC----FVLKSDHNPNGYCNIKTIKSMTFI------DDYTVATGSDHWGIHIWKLPRANDSYGFT----------- 331 (609)
T ss_pred eecccc----eeEeccCCCCcceeeeeeeeeeee------cceeeeccCcccceEEEecCCCccccCcc-----------
Confidence 877543 345555443 223445553 55679999999999999865332211110
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
..++ .... -. ....+...+-.+.||..-+.++.|+|...+| +|.+-.+.+|+|.-
T Consensus 332 --~IG~----------~~~~----~~-----~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 332 --QIGH----------DEEE----MP-----SEIFIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKLWSD 386 (609)
T ss_pred --ccCc----------chhh----Cc-----hhheecceeEEEecccccccceeecCCcceE-eccchhhheecccc
Confidence 0000 0000 00 0001122344677999999999999999999 88888999999963
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=153.30 Aligned_cols=205 Identities=13% Similarity=0.083 Sum_probs=153.5
Q ss_pred CCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCC----------------CceeeEeecCCCCeeEEEEccCC-CEEE
Q 008058 115 CHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLT----------------GSLLGKFRASTKGISCMAVSSDG-KMLA 175 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~g-~~l~ 175 (579)
+|.+.++-+.-.+-|+ +.++-+..|.|++||+.. .+++.++.+|...=+.++|||-- ..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 5667777777776543 455557899999999852 35678889999888999999932 2466
Q ss_pred EEC--CeEEEEECCCCeee---EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceee
Q 008058 176 TAA--GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (579)
Q Consensus 176 ~~~--g~i~vwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (579)
+|. +.|++|...++.-. ..|.+|+..|-.+.|+|..+-++++++-|++|+|||++.+.... ++.+- .+...+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~k-Ah~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTK-AHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEee-ccCCce
Confidence 776 89999999887542 34678999999999999766544444479999999999986543 55553 444477
Q ss_pred EeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEE
Q 008058 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (579)
+++.|+ ..-.+||+|+.||+++|||+++.+.- +
T Consensus 306 NVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~~--------------------~---------------------- 338 (440)
T KOG0302|consen 306 NVISWN-----RREPLLASGGDDGTLSIWDLRQFKSG--------------------Q---------------------- 338 (440)
T ss_pred eeEEcc-----CCcceeeecCCCceEEEEEhhhccCC--------------------C----------------------
Confidence 888887 45569999999999999998654320 0
Q ss_pred EEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
....+..|..+|+++.|+|...-..+.+|.|+.+.+|++
T Consensus 339 ----------pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 339 ----------PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ----------cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 011566899999999999865433366667999999998
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=3.5e-17 Score=159.61 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=172.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE--eccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
-..| +.+.|-|....|++++.|.++++||++++++... +.+|...+.+.+|.+.
T Consensus 100 ~nAi--fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~---------------------- 155 (720)
T KOG0321|consen 100 KNAI--FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT---------------------- 155 (720)
T ss_pred ccee--EeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC----------------------
Confidence 3457 5569999556899999999999999999988766 7888888877777765
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEE------EEe--------------------cCCCCCCEEE---EEEccCCCE
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRL--------------------SDCHPGGVSA---ISFATHGSC 131 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~--------------------~~~h~~~V~~---l~~~~~~~~ 131 (579)
+...+++|+.||.|.|||+.-...- ..+ ..+|...|.+ +.+..|...
T Consensus 156 ----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 156 ----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred ----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 2678999999999999999743200 000 1133444555 555678888
Q ss_pred EEEEeC-CCcEEEEeCCCCceee--------EeecC---CCCeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEe
Q 008058 132 IYSAGA-DGMVCEIDPLTGSLLG--------KFRAS---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKF 195 (579)
Q Consensus 132 l~s~~~-dg~v~iwd~~~~~~~~--------~~~~~---~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~ 195 (579)
|++++. |+.|++||++...... .+..| ...+.++..+..|.++.+.+ +.|+.|++.+- .++..+
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 999887 9999999998654322 22223 23678888888888776655 99999999864 334445
Q ss_pred ecCCCCEE--EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058 196 SGHPGAVR--FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 196 ~~h~~~v~--~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 273 (579)
.++...-. .-..+|++.++++++ .|...++|.+...+.. ... +..+...+.++.|.+. +. .-++++++|
T Consensus 312 sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~---~~~-l~Ght~eVt~V~w~pS---~~-t~v~TcSdD 382 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAP---PAL-LLGHTREVTTVRWLPS---AT-TPVATCSDD 382 (720)
T ss_pred cCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCC---hhh-hhCcceEEEEEeeccc---cC-CCceeeccC
Confidence 54432211 124579999999998 6999999999887644 222 3344455566666632 23 346777999
Q ss_pred CeEEEEECCCc
Q 008058 274 GVCYIWYGQNI 284 (579)
Q Consensus 274 g~i~iwd~~~~ 284 (579)
.++++|++.++
T Consensus 383 ~~~kiW~l~~~ 393 (720)
T KOG0321|consen 383 FRVKIWRLSNG 393 (720)
T ss_pred cceEEEeccCc
Confidence 99999998654
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=4e-17 Score=151.20 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=161.3
Q ss_pred cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--------C--------CceeeEeecCCCCeeEEEEccCCCEEEE
Q 008058 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------T--------GSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 113 ~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
+..|...|+++.|+|+|..+++|+.+|.|.+|-.. + ....+.+.+|...|..++|+|++.++++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 35799999999999999999999999999999755 2 1234557789899999999999999999
Q ss_pred EC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---------------e
Q 008058 177 AA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---------------C 239 (579)
Q Consensus 177 ~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~---------------~ 239 (579)
++ +.+++||+..|+....+.+|...|..++|.|-++++++-+ .|+..+.+++......... .
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 98 8999999999999999999999999999999999999987 5887777776554322100 0
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEc----CCe-----EEEEECCCce-eeccc---CCceEEeeecccC---
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TGV-----CYIWYGQNIE-ELRNT---KATKILSSSEDVN--- 303 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~-----i~iwd~~~~~-~~~~~---~~~~~~~~~~~~~--- 303 (579)
...+-|..... .+|....++|+|..+++... +|. .++|+-...+ +.... +.....+.+..++
T Consensus 220 s~rLfhDeTlk--sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 220 STRLFHDETLK--SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred eeeeeecCchh--hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 11111111110 12222334499999988743 333 3556543221 11111 1111111111100
Q ss_pred cccccc------cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccc
Q 008058 304 SKSQKS------ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (579)
Q Consensus 304 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (579)
.+.... +-..+++-.. ...+++.++....+.+-....|...++.++||+||..| +-.|.|+-.-+
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt-------~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l-~vSS~DGyCS~ 368 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIAT-------KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVL-LVSSTDGFCSL 368 (434)
T ss_pred ccccccccccccccceEEEEee-------cceEEEeccccccceEEEeeeeeeeecceeecCCCcEE-EEeccCCceEE
Confidence 000000 0001111111 11233334444455555555799999999999999999 66666775433
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.3e-16 Score=147.15 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=161.8
Q ss_pred ccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCCCCCEEEEEEccC-CCEE
Q 008058 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATH-GSCI 132 (579)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h~~~V~~l~~~~~-~~~l 132 (579)
.+||.+ .+..+.|.|.+ ...|++|+.|.+|.||++..+... ...+.+|...|--+.|+|. .+.|
T Consensus 77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 456654 55678899987 788999999999999999865432 2234689999999999995 4568
Q ss_pred EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEec
Q 008058 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSD 209 (579)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~ 209 (579)
++++.|.+|.+||+.+|+.+-++. |.+.|++++|+.||.++++++ ..|+|||.++++.+..-.+|.+. -..+.|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999988888 999999999999999999998 89999999999999888888753 44567888
Q ss_pred CCCEEEEEec---CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCce
Q 008058 210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 210 ~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 285 (579)
+|. ++++|. .++.+-+||...-... .....++.... +-.-+++ +|...|..++ .|+.|+.|.+.+-.
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSnG-vl~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSNG-VLLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCCc-eEEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence 887 556552 3678999998776543 13334443333 3344555 7777776655 59999999987654
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=7.6e-17 Score=157.75 Aligned_cols=272 Identities=14% Similarity=0.182 Sum_probs=197.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
...|+++ +|-|||..|+.+.. ..+.|||...|...+.+++|...+.+++|+.+
T Consensus 12 ~hci~d~--afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~d------------------------ 64 (1081)
T KOG1538|consen 12 EHCINDI--AFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD------------------------ 64 (1081)
T ss_pred ccchhee--EECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccC------------------------
Confidence 3457566 99999998877764 47999999999999999999988887777777
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
|..+++|+.|..|.+|+..-.... + -.|++.|.|+.|+|-...+++|+... .-+|.... +.+.+.+ ....+
T Consensus 65 ---GkrFASG~aDK~VI~W~~klEG~L-k--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q-K~V~K~k-ss~R~ 135 (1081)
T KOG1538|consen 65 ---GKRFASGSADKSVIIWTSKLEGIL-K--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ-KSVSKHK-SSSRI 135 (1081)
T ss_pred ---CceeccCCCceeEEEeccccccee-e--eccCCeeeEeecCchHHHhhhcchhh-ccccChhh-hhHHhhh-hheeE
Confidence 889999999999999997654433 3 35999999999999999999997543 56888643 3333333 34578
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCC-----CEEEEEecCCCeEEEEEcCCC
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNG-----KYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~-----~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.+++|..||++++.|- |+|.+-+- +++....+ .|..++|.+++|+|.. ..+++. .+..++..+.+...
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~-DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA-DWGQTLSFYQLSGK 213 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE-eccceeEEEEecce
Confidence 9999999999999997 89998864 44433333 3577899999999863 245555 48888888888764
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
... ....+.... .|..+. ++|.+++.|+.|+.+++|--+ |-.+.
T Consensus 214 ~Ig---k~r~L~FdP---~CisYf-----~NGEy~LiGGsdk~L~~fTR~-GvrLG------------------------ 257 (1081)
T KOG1538|consen 214 QIG---KDRALNFDP---CCISYF-----TNGEYILLGGSDKQLSLFTRD-GVRLG------------------------ 257 (1081)
T ss_pred eec---ccccCCCCc---hhheec-----cCCcEEEEccCCCceEEEeec-CeEEe------------------------
Confidence 322 011222222 233333 899999999999999999421 11111
Q ss_pred hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
++..-...+++++..|+|++. +-|..||++--+++.
T Consensus 258 -------------------------------Tvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 258 -------------------------------TVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNLI 293 (1081)
T ss_pred -------------------------------eccccceeEEEEEEccCCceE-EEEEccCeeehhhhH
Confidence 111122368888888888888 777788888777763
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=1e-14 Score=149.67 Aligned_cols=323 Identities=20% Similarity=0.285 Sum_probs=217.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
...| ..+.|.+++..++.++.|+.+.+|+...+. ....+..... .....+.+. .+.
T Consensus 65 ~~~i--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~-- 121 (466)
T COG2319 65 EDSI--TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALS--SPD-- 121 (466)
T ss_pred cceE--EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEE--CCC--
Confidence 3456 555999999999999999999999998876 5555543221 111122221 111
Q ss_pred cccCCc-EEEEEEC-CCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec
Q 008058 82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 82 ~~~~~~-~l~~~~~-~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~ 157 (579)
.. .++..+. ++.+.+|+... ......+ ..|...|.++.|+|+++.+++++. |+.+++|+...+..+..+.+
T Consensus 122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 33 3444344 88999999998 5554444 679999999999999998888885 99999999998889999999
Q ss_pred CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
|...+.+++|+|++. .+++++ +.|++||...+..+. .+.+|.... ...|+|++.++++++ .|+.+++|+.....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence 999999999999998 555534 899999999888877 688888875 448999998877666 79999999998776
Q ss_pred cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC--CceEEeeecccCcccccccc
Q 008058 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (579)
.. ......+...+....+. |++..+++++.|+.+.+|+..+........ .+...+.... +.++..
T Consensus 275 ~~----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 341 (466)
T COG2319 275 SL----LRTLSGHSSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS--- 341 (466)
T ss_pred cE----EEEEecCCccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence 41 11223335556666776 788888889889999999988776554332 1111111111 111101
Q ss_pred hhhhhc-cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecc-ccceecccceeee
Q 008058 312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQ 380 (579)
Q Consensus 312 ~~i~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s-~s~d~~~~~w~~~ 380 (579)
.+..+ ..++ .+.. +.............+. .+..+.+++ .... .+ ++.++.+.+|+..
T Consensus 342 -~~~~~~~~d~-------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 342 -LLVSGGSDDG-------TIRL-WDLRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLS 400 (466)
T ss_pred -EEEEeecCCC-------cEEe-eecCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEecc
Confidence 22222 2222 2222 2111111111222222 278888888 5433 44 6788999999874
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.9e-17 Score=158.34 Aligned_cols=242 Identities=15% Similarity=0.148 Sum_probs=180.8
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCC--------CeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK--------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
-||++ +|.|....|++++.||+|++|+++. -+.+.+|.+|.+++.++++...
T Consensus 296 ~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------------ 355 (577)
T KOG0642|consen 296 CIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------------ 355 (577)
T ss_pred hhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC------------------
Confidence 46666 8999999999999999999999832 2467888899888887777766
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
+..+++|+-||+|+.|++..+ ..+...+.||++.|+.+++++....|++|+.||+|+.|+..
T Consensus 356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 788999999999999966421 23344557999999999999999999999999999999987
Q ss_pred CCceeeEeecCC--CCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEE
Q 008058 148 TGSLLGKFRAST--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 148 ~~~~~~~~~~~~--~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~ 215 (579)
.... .+|.... +...++++-.....+..++ +.-.+++......+..+... ...+..+.++|.+...+
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 6655 4444322 3446666654433333333 34444455554444444321 23467788999998888
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
++. .|+.|+++|..+++.. .....+...+++.++. |+|-+|++++.||.+++|.+.....+
T Consensus 506 ~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 506 TAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhee
Confidence 776 8999999999988744 4555666777888887 99999999999999999987654443
No 170
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.4e-15 Score=138.09 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=171.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
....|+.|...|..|+.|| -++|+................+....|+ ..+
T Consensus 9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS-----------------------------SSL 58 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS-----------------------------SSL 58 (391)
T ss_pred eeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc-----------------------------cce
Confidence 3347999999999999998 4788776433211111111111111121 455
Q ss_pred EEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCCee
Q 008058 89 LVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKGIS 163 (579)
Q Consensus 89 l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~ 163 (579)
+++.+.+. .+++++...+..+..+. ...+|.++.++. +.|+.+-.+ .|+|||+++.+.++++.. +...+.
T Consensus 59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 59 VAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred eEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 66666543 39999999998887775 446799999964 467666544 499999999999888654 344677
Q ss_pred EEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccce
Q 008058 164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSAS 238 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~ 238 (579)
++++++.+.+++.-+ |.|.+||+.+-+.+..+..|.+++.+++|+++|.+|++++ +.| .|+|+.+.++++.
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVIRVf~v~~G~kl--- 209 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVIRVFSVPEGQKL--- 209 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEEEEEEcCCccEe---
Confidence 777777778888755 9999999999999999999999999999999999999998 455 5799999998754
Q ss_pred eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
..+.-+.....+..++|+ |++.+|++.+..++|++|.++...
T Consensus 210 ~eFRRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeeCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence 223323334445667777 999999999999999999987654
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.5e-16 Score=133.34 Aligned_cols=227 Identities=13% Similarity=0.189 Sum_probs=160.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe----------EEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+.-+++|.++||+.|+.+|+|.+..+.+-. .+..++.|.+++..+.|..
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--------------------- 72 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--------------------- 72 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---------------------
Confidence 344789999999999999999999875321 2223344555444444432
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeE------EEEe-cCCCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRL-SDCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~-~~~h~-----~~V~~l~~~~~~~~l~s~~~dg~v~iwd~ 146 (579)
. ++..+.||.|+-|....... .++. ...|. ..|+++...|..+-++.++.|+.++.||+
T Consensus 73 --------~-~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 73 --------D-FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred --------h-heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 2 45555669999998754321 1111 11222 35899999998888888889999999999
Q ss_pred CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----------CCEEEEEEecCCCEE
Q 008058 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----------GAVRFMTFSDNGKYV 214 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~----------~~v~~l~~~~~~~~l 214 (579)
++|+..+++++|.+.|.++.--.....+++|+ |++++||.++++.+..+.... ..|.+++ -+..++
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWl 221 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWL 221 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceE
Confidence 99999999999999999999855566777777 999999999999988774322 2244444 445688
Q ss_pred EEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
+.++ ...+.+|+++..+.. +++.+..+.. .+.| ....++++++.+.+.-|.+.
T Consensus 222 vCGg--Gp~lslwhLrsse~t---~vfpipa~v~---~v~F-------~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 222 VCGG--GPKLSLWHLRSSEST---CVFPIPARVH---LVDF-------VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EecC--CCceeEEeccCCCce---EEEeccccee---Eeee-------ecceEEEeccccceeeeeec
Confidence 7664 578999999998754 6666554433 2333 23678888888889888654
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1.5e-14 Score=148.51 Aligned_cols=320 Identities=21% Similarity=0.317 Sum_probs=215.9
Q ss_pred cccceEEEEccCCC-EEEEEeC-CCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~~~~~fs~dg~-~las~s~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++..+... ++++. +++..+. |+.+.+|+... ......+..|...+..+.|++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 166 (466)
T COG2319 111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD----------------------- 166 (466)
T ss_pred ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence 45455444 88888 5555455 99999999987 6777777766665555555544
Q ss_pred cccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceee-EeecC
Q 008058 82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~ 158 (579)
+..++.++. ++.+++|+...+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 556777775 999999999987776555 56999999999999998 55665899999999998888887 68888
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.... ...|+|++..+++++ +.+++|+...... +..+.+|...+.++.|.|++..+++++ .|+.+.+|+.......
T Consensus 242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL 319 (466)
T ss_pred Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence 7765 448999998888776 8999999987654 445568899999999999888888866 6788999988876543
Q ss_pred cceeEEe-eecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058 236 SASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
. ... ..+.. .+..+.+. +++..++.+ ..|+.+.+|+............... ..... +.+. . .
T Consensus 320 ~---~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~----~ 383 (466)
T COG2319 320 S---SLTLKGHEG-PVSSLSFS-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS-FSPD-G----R 383 (466)
T ss_pred E---EeeecccCC-ceEEEEEC-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEE-ECCC-C----C
Confidence 1 111 12333 34444443 444555555 6789999999887762222221111 11111 1111 1 1
Q ss_pred hhh-ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 314 IFA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 314 i~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+.. +..++.+..++ ............+...+....+++++..+ ++++.+.+++.|++.
T Consensus 384 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 442 (466)
T COG2319 384 VVSSGSTDGTVRLWD--------LSTGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEEecCCCceEEEe--------cccCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEecc
Confidence 111 22222222211 11111121222221578899999999999 888889999999885
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=5.6e-15 Score=146.41 Aligned_cols=188 Identities=18% Similarity=0.257 Sum_probs=124.5
Q ss_pred CcEEEEEE-CCCeEEEEEcc-CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cc---eeeEee
Q 008058 86 SSLLVLGT-GGGDVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GS---LLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~-~~g~i~iwd~~-~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~-~~---~~~~~~ 156 (579)
+++|++++ .++.|.+|++. ++.. .... ...+....++|+|+|+++++++ .++.|.+||+.+ +. .+..+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 66676665 46779999997 3433 2222 1334567899999999988876 488999999864 32 223232
Q ss_pred cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE-------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
+.....+++++|+|+++++++ +.|.+||+.+...+. .... ......+.|+|+|++++++...++.|.+
T Consensus 124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 223567889999999998766 799999998633221 1111 2345789999999999888756899999
Q ss_pred EEcCCCccccceeEEeeec-C-----ceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCC
Q 008058 227 WRTDGVKKQSASCVLAMEH-P-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 283 (579)
|++...... ...+..... + ......+.++ |+|++++++.. ++.|.+|+++.
T Consensus 202 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 202 WQLKDPHGE-IECVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEeCCCCC-EEEEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence 999743111 112222211 1 1111234555 99999999865 78999998754
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=143.65 Aligned_cols=190 Identities=12% Similarity=0.201 Sum_probs=145.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (579)
+.+|++-..|.|++||..+|+.+..|+++....+.+.|... + ++..+.+|+.||.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------d-------s~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------D-------SPHGVISCSSDGT 95 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------C-------CCCeeEEeccCCe
Confidence 45888888999999999999999999988887776666543 1 1677999999999
Q ss_pred EEEEEccCCeEEEEec-CCCC-CCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCce-eeE-eecCCCCeeEEEEcc
Q 008058 98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS 169 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~-~~h~-~~V~~l~~~~~~~~l~s~~----~dg~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~~p 169 (579)
|++||++......++. .+|. .+-.+++.+..++.+++|. .|-.|.+||++..+. ++. ...|.+.|+++.|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999999876554443 3344 4667777776777777774 466899999998765 444 567899999999999
Q ss_pred C-CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCc
Q 008058 170 D-GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 170 ~-g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
. -++|++|+ |.|.+||+..... +...-.|...|..+.|..++ +.+.+-+ ...+..+|+++.+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS 245 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence 5 56888888 9999999975422 22233477889999999887 2344444 68889999987764
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=6.1e-16 Score=137.33 Aligned_cols=207 Identities=15% Similarity=0.235 Sum_probs=152.1
Q ss_pred cccceEEEEccCC-----CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 5 NIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 5 ~V~~~~~~fs~dg-----~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
|++.+ -|.|+. +.||+++ | .+|+|.+.........+. ..+.. .+.+...+.|+..|...+
T Consensus 98 P~tK~--~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~--------~L~~~-kns~~~aPlTSFDWne~d-- 162 (364)
T KOG0290|consen 98 PVTKL--MWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQS--------VLNNN-KNSEFCAPLTSFDWNEVD-- 162 (364)
T ss_pred Cccce--EecCCccccCcchhhccc-C-eEEEEeccCcCCceehhh--------hhccC-cccccCCcccccccccCC--
Confidence 56444 888876 3677665 3 799999874321111110 11111 235556678899998887
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
.++|.+++-|-+..|||++++.. +.+.+-+|...|.+++|...+. .|++++.||.||+||++.-+.-..+.
T Consensus 163 ------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 163 ------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred ------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 67899999999999999999733 4444468999999999998554 58999999999999998765433332
Q ss_pred c---CCCCeeEEEEccCC-CEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEE
Q 008058 157 A---STKGISCMAVSSDG-KMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW 227 (579)
Q Consensus 157 ~---~~~~v~~l~~~p~g-~~l~~~~---g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vw 227 (579)
. ...+...++|++.. +++|+-. ..|.+.|++.. .++..+.+|.+.|+.++|.|.+ .++.++| +|..+-+|
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliW 315 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIW 315 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEE
Confidence 2 23478889998854 5666543 79999999964 5688999999999999999965 4677777 79999999
Q ss_pred EcCCCc
Q 008058 228 RTDGVK 233 (579)
Q Consensus 228 d~~~~~ 233 (579)
|+...-
T Consensus 316 Dl~q~~ 321 (364)
T KOG0290|consen 316 DLQQMP 321 (364)
T ss_pred eccccc
Confidence 998653
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=1.1e-15 Score=155.03 Aligned_cols=250 Identities=12% Similarity=0.127 Sum_probs=180.9
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEE--EEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .|++|+| +.+++|.|..+|+|.+||...+... ..+.. ........++.+.|.....
T Consensus 242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------~~~sh~~~v~~vvW~~~~~- 304 (555)
T KOG1587|consen 242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------LEVSHSEPVTAVVWLQNEH- 304 (555)
T ss_pred CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--------------ccccCCcCeEEEEEeccCC-
Confidence 4677 7779999 5678888889999999999876642 11111 1122245677888877421
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEE-----ecC------CCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----LSD------CHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-----~~~------~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~ 147 (579)
+.-+++++.||.|..|+++.-..... ... .....++++.|.+ +-..|+.|+..|.|.--+-.
T Consensus 305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 35588999999999998864322100 000 1234689999988 44569999999998774322
Q ss_pred CC--------ceeeEeecCCCCeeEEEEccCCCE-EEEEC-CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008058 148 TG--------SLLGKFRASTKGISCMAVSSDGKM-LATAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 148 ~~--------~~~~~~~~~~~~v~~l~~~p~g~~-l~~~~-g~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 216 (579)
.. +....+..|.++|+++.++|=+.. +.+++ .+++||... ...++..+..+...|++++|||...-++.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 21 123345668889999999996554 44444 799999988 66778888888888999999999887777
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
+...||.+.+||+...... ++....-.......+.++ +.|+.|++|...|++++|++..
T Consensus 459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCc
Confidence 7778999999999877644 333333336677778887 7899999999999999999854
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.8e-16 Score=151.32 Aligned_cols=225 Identities=12% Similarity=0.131 Sum_probs=171.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc--------------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-------------- 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~-------------- 150 (579)
+.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+.. ++.+.....+.+-+..-|.
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence 8999999999999999999999998875 4568999999997764 3333233334444432110
Q ss_pred -----------------------eeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCE
Q 008058 151 -----------------------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAV 202 (579)
Q Consensus 151 -----------------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v 202 (579)
-++..-.|...|..+.|+..|.+|++.. ..|.|+++...+...-|....+.|
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 1122223677899999999999999876 489999998776666676667889
Q ss_pred EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 203 ~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
.++.|+|...+|++++ .+.|++||+...... ..+......++..+.+ |.|..|+.|+.|+.+..||++
T Consensus 570 q~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv-----KkL~tg~kwiS~msih-----p~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV-----KKLLTGSKWISSMSIH-----PNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eEEEecCCCceEEEEe--ccceEEEehhHHHHH-----HHHhcCCeeeeeeeec-----CCCCeEEEecCCCeeEEEEcc
Confidence 9999999999999886 678999999875532 3444555667777776 999999999999999999975
Q ss_pred CceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc
Q 008058 283 NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (579)
-... ..+++..|...+.+++|.+.=.
T Consensus 638 lssk------------------------------------------------------Pyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 638 LSSK------------------------------------------------------PYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred cCcc------------------------------------------------------hhHHhhhhhhhhhhhhhccccc
Confidence 3311 0114567888899999998888
Q ss_pred eeeccccceecccceee
Q 008058 363 LLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 363 ~l~~s~s~d~~~~~w~~ 379 (579)
++ +|||.|+++.+...
T Consensus 664 Lf-as~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 664 LF-ASGSDDGTVIVFHG 679 (733)
T ss_pred ee-eeecCCCcEEEEee
Confidence 88 99999999888753
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=4.6e-15 Score=155.02 Aligned_cols=254 Identities=14% Similarity=0.149 Sum_probs=161.3
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEE-EEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++.|..+ +.++ ++.+|++||.||+|+|||...-... .++ -....|++. +..+.++.....
T Consensus 1048 s~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------rS~ltys~~------~sr~~~vt~~~~---- 1109 (1431)
T KOG1240|consen 1048 SSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------RSELTYSPE------GSRVEKVTMCGN---- 1109 (1431)
T ss_pred cccccce--eecCCCCceEEEecCCceEEEeeehhhhcCccee------eeeEEEecc------CCceEEEEeccC----
Confidence 4455433 5555 5699999999999999997532110 000 011122211 222223332222
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCC-CCCEEE-EEEcc-CCC-EEEEEeCCCcEEEEeCCCCc
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCH-PGGVSA-ISFAT-HGS-CIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h-~~~V~~-l~~~~-~~~-~l~s~~~dg~v~iwd~~~~~ 150 (579)
++.+|+++.||.|.+.++...... .+....+ .+.+.+ -+|.. .+. .++.+...+.|..||++...
T Consensus 1110 -----~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1110 -----GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred -----CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 778999999999999998762111 1111222 233333 34433 233 67788888999999998776
Q ss_pred eeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecC---CCEEEEEec-CC
Q 008058 151 LLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-GE 221 (579)
Q Consensus 151 ~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~---~~~l~s~s~-~d 221 (579)
....++. ..+.|++++.+|.+.++++|. |.+.+||++=+.++..+. ++..+++.+..+|- ....+++++ ..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 5555443 346899999999999999998 999999999888887763 45578888877764 346666665 67
Q ss_pred CeEEEEEcCCCccccceeEEeee---------cCc--------eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 222 RYIALWRTDGVKKQSASCVLAME---------HPA--------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+.|.+|++.++.... ++-.. .+. .......+. ..+.++.+|+.|..|+.||....
T Consensus 1265 nevs~wn~~~g~~~~---vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQT---VLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CceeeeecccCcceE---EEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCc
Confidence 889999999885431 11111 000 011112222 35678899999999999998766
Q ss_pred eee
Q 008058 285 EEL 287 (579)
Q Consensus 285 ~~~ 287 (579)
+..
T Consensus 1337 ~~s 1339 (1431)
T KOG1240|consen 1337 EIS 1339 (1431)
T ss_pred ccc
Confidence 543
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=145.55 Aligned_cols=176 Identities=16% Similarity=0.302 Sum_probs=143.0
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+...++++++||.+.+.+-. ++.. +...+|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|+|
T Consensus 74 ~~d~~~i~s~DGkf~il~k~-~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS-ARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred CcceEEEEcCCceEEEeccc-chhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 46789999999999888743 3333 33368999999999999999999999999999999 577665565556679999
Q ss_pred EEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058 165 MAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 165 l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
++|.|+.+-++.+. +.+.+=.+.....+-.++.|.+-|.++.|+|.+..++++| +|-..++||-... ..+..
T Consensus 151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~------~Lf~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGA------NLFTS 223 (737)
T ss_pred EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCc------ccccC
Confidence 99999877666555 8898888887777778899999999999999999999998 8999999998765 34566
Q ss_pred ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 277 (579)
..+...++.++|. |+ ..++.++. ++++
T Consensus 224 ~~~ey~ITSva~n-----pd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 224 AAEEYAITSVAFN-----PE-KDYLLWSY-NTAR 250 (737)
T ss_pred Chhccceeeeeec-----cc-cceeeeee-eeee
Confidence 6778889999998 88 55555554 3455
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.9e-15 Score=132.93 Aligned_cols=200 Identities=14% Similarity=0.210 Sum_probs=152.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
-|+.|.||+..+|+-. |..|.+|+++.+.. +.++....... .....+.-.|.|-. ..
T Consensus 127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------~~~~ftsg~WspHH--------dg 184 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------MRHSFTSGAWSPHH--------DG 184 (370)
T ss_pred eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-------------ccceecccccCCCC--------cc
Confidence 4569999999998877 88999999988765 44444222111 12234556676643 22
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCC-CceeeEeecCCCCeeEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLT-GSLLGKFRASTKGISCM 165 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l 165 (579)
.-+..+.++++..||+++..+...+..+|...|.++.|+|+.++ |++|+.||.|++||.+. ..+++.+.+|...|.++
T Consensus 185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 34666788999999999998888888899999999999998776 88999999999999985 45788899999999999
Q ss_pred EEccCC-CEEEEEC--CeEEEEECCCC-----------------------------eeeEEeecCCCCEEEEEEecCCCE
Q 008058 166 AVSSDG-KMLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 166 ~~~p~g-~~l~~~~--g~i~vwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~~~~~~ 213 (579)
.|+|.- +++++|+ ..|.+|....- ..+.++..|...|.+++|+.-..+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 999954 4555665 57777754210 124467789999999999988888
Q ss_pred EEEEecCCCeEEEEEcC
Q 008058 214 VLSSAVGERYIALWRTD 230 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~ 230 (579)
++++-+.||.+.|=.+.
T Consensus 345 iFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccCceEEeecCC
Confidence 77766689998876554
No 181
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6.7e-16 Score=144.30 Aligned_cols=194 Identities=21% Similarity=0.182 Sum_probs=154.3
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+++|++||..+++|+.||++|||++-+...+.....|...+.++.|+++ +.+|
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~l 201 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKFL 201 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcEE
Confidence 4599999999999999999999999888888888889999999999988 8889
Q ss_pred EEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCC---C--EEEEEeCCCcEEEEeCCCCce-----eeEeecC
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---S--CIYSAGADGMVCEIDPLTGSL-----LGKFRAS 158 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~---~--~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~ 158 (579)
++-+.+ ..+||+..++..+.+.. .+.......+.|+.|+ . .++....-+.|+.||+...+. .++....
T Consensus 202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 999999 99999999997665543 3344456788888877 3 333344556777777643221 1111123
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
...|++++.+++|++++.|+ |.|.|++..+.+.+..+ +.|...|+.+.|+|+.+++++.+ .|....+..+.-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~vd 356 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAVD 356 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEeec
Confidence 34799999999999999999 99999999988777655 57999999999999999999987 5888888877653
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=3.8e-14 Score=140.48 Aligned_cols=236 Identities=9% Similarity=0.049 Sum_probs=150.4
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEECC-CCeEE--EEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
.++++|++++|++++ .++.|.+|++. ++... ..... .. ....+.+.+.
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~------------------~p~~i~~~~~--------- 90 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PG------------------SPTHISTDHQ--------- 90 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CC------------------CceEEEECCC---------
Confidence 459999999987765 47899999986 34332 11110 00 1122333332
Q ss_pred CcEEEEEE-CCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-----E
Q 008058 86 SSLLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----K 154 (579)
Q Consensus 86 ~~~l~~~~-~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~-----~ 154 (579)
++++++++ .++.|.+|++.+.. .+..+ .+.....+++++|+|+++++++ .++.|.+||+.+...+. .
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 66666665 47889999997432 22211 2334567889999999986555 56999999997633221 1
Q ss_pred eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC--C--eeeEEeecC------CCCEEEEEEecCCCEEEEEecC
Q 008058 155 FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--H--KKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 155 ~~~-~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~--~--~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
... .......++|+|+|+++++++ +.|.+|++.. + +.+.++..+ ......+.|+|++++++++...
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 111 223567899999999998876 8999999973 3 233333322 1223468899999999988656
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECC
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 282 (579)
++.|.+|++...... ...+..... ......+.++ |+|++|++++. +++|.+|+++
T Consensus 249 ~~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 249 ASLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEEEEeCCCCe-EEEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence 889999999654321 001111111 1122344565 99999998876 8999999764
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.1e-13 Score=127.21 Aligned_cols=145 Identities=19% Similarity=0.346 Sum_probs=121.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecC--CCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.+.|+++-.+. |+|||+.+-+.+.++.. .+..++.++.+++.+.+++.-+ ..|.|.+||..+-+.+.++.+|.+.
T Consensus 97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence 34456655554 99999999998876643 3666788888888888887643 4689999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 162 ISCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g-~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+.|++|+|+|.+||+++ | .|+||.+.+|+.+.+|.... ..|.+++|+|++++|.+++ ..++|.+|.+...
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV 250 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence 99999999999999999 5 68999999999999996444 3477999999999988887 6899999988654
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.5e-14 Score=124.03 Aligned_cols=242 Identities=16% Similarity=0.215 Sum_probs=156.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+||+.+ +|. ..+|++|+ ||.|+-|.+.........+..- . .-++...+....+--..-|..+ +
T Consensus 61 hdgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lw--e----~~~P~~~~~~evPeINam~ldP--~-- 125 (325)
T KOG0649|consen 61 HDGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLW--E----VKIPMQVDAVEVPEINAMWLDP--S-- 125 (325)
T ss_pred cCCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhhh--h----hcCccccCcccCCccceeEecc--C--
Confidence 56888444 887 44677777 6999999886543211111000 0 0000000111111111223222 1
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC--
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-- 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-- 159 (579)
.+.++++..|+.++-||+++|+....+ .+|++.|.++.-......+++|+.||++++||+++++.+..+...+
T Consensus 126 ----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 126 ----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred ----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 445666669999999999999998666 7999999999985556679999999999999999999888765322
Q ss_pred --------CCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 160 --------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 160 --------~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
..|.+++. +..++++|+ ..+.+|+++..++...|+ -..++..+.|..+ .++++| ..+.|.-|.+.
T Consensus 201 ~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l~ 274 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTLN 274 (325)
T ss_pred hhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeeec
Confidence 24556655 466899988 589999999999888886 5667888888754 566776 57789999886
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw 279 (579)
..-. ......++.. ....+.. +| -++|-.++....++|+
T Consensus 275 Gvl~----a~ip~~s~~c--~s~s~~~---~p-~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 275 GVLQ----ANIPVESTAC--YSASWQT---SP-IKFISIAGFSNKLHIL 313 (325)
T ss_pred cEEE----EeccCCccce--eeecccC---Cc-eEEEEecccceeeeee
Confidence 5321 1122223322 2222220 13 3566666777788887
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=135.41 Aligned_cols=225 Identities=13% Similarity=0.199 Sum_probs=160.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
|+..++|+.+.|.-|++||.-+|+....+........ -...-+++|.+. +..|+. +.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------Geqlfa-Gy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLFA-GY 177 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEee-cc
Confidence 7788999999999999999999998887764322100 011223444332 555554 45
Q ss_pred CCeEEEEEc-cCCeEE---EEe---cCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058 95 GGDVLALAV-SAGQLK---WRL---SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 95 ~g~i~iwd~-~~~~~~---~~~---~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
...|+++|+ +.|... .++ ..+..+-|.+++|+|- .+.++.++...++-+|.-..+.++..+-+|.+.|+.+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 678999999 444321 111 1244678999999995 45788998888888888778889999999999999999
Q ss_pred EccCCCEEEEEC---CeEEEEECCC-CeeeEEeecCCC-CEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQKFSGHPG-AVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 167 ~~p~g~~l~~~~---g~i~vwd~~~-~~~~~~~~~h~~-~v~~l~~--~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
|.++|+.|.+|. ..|..||++. ..++..+..|.. .-..|-| .|++++|++++ .||.|++||+.+....
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~---- 332 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNE---- 332 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCc----
Confidence 999999999998 5899999996 456777777766 3334544 58899999886 7999999999883321
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
+.........+..+.+. |-=..+++++.
T Consensus 333 ~sv~~~~sd~vNgvsln-----P~mpilatssG 360 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLN-----PIMPILATSSG 360 (406)
T ss_pred ccccccccccccceecC-----cccceeeeccC
Confidence 22334445555666665 55444555443
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.8e-14 Score=144.10 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=196.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCC--Ce--EEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLK--GQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
-|.++||+++++|+|..||+|.||.--. +. ....+.=|...+. ++.|.+.
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~------------------~L~fS~~-------- 262 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN------------------SLSFSSD-------- 262 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc------------------eeEEecC--------
Confidence 4569999999999999999999996322 11 1111211222333 3333332
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec-------
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------- 157 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------- 157 (579)
|.+|++|+..|.+.+|.+.+++ .+++..-.++|..+.++||+.+......|..|.+....+.....++.+
T Consensus 263 -G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 263 -GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred -CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 8999999999999999999998 467777889999999999999999999999999988765544333332
Q ss_pred ----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-----cCC------CCEEEEEEecCCCEEEEEec-
Q 008058 158 ----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHP------GAVRFMTFSDNGKYVLSSAV- 219 (579)
Q Consensus 158 ----~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-----~h~------~~v~~l~~~~~~~~l~s~s~- 219 (579)
..+-.+.++++|.-+.++-.+ |.|.+||+.+.+.+..+. .+. -.++.++.+..|.++++.-.
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 133567789999544454444 999999998877665552 122 23667777777888877531
Q ss_pred ------CC--CeEEEEEcCCCcccc-ceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCceeecc
Q 008058 220 ------GE--RYIALWRTDGVKKQS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 220 ------~d--~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
.| ..++.|........- .......+|....+...... +... ..++++.||.++||-+...+.+..
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-----~~rs~~~vta~~dg~~KiW~~~~~~n~~k 494 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-----PTRSVRCVTASVDGDFKIWVFTDDSNIYK 494 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-----CcccceeEEeccCCeEEEEEEecccccCc
Confidence 22 368899877654321 11222344665555555554 3333 889999999999998755443322
Q ss_pred cCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008058 290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (579)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (579)
.. ..+.| ...-..|..++..++||.||..| +.|
T Consensus 495 ~~---s~W~c------------------------------------------~~i~sy~k~~i~a~~fs~dGsll--a~s 527 (792)
T KOG1963|consen 495 KS---SNWTC------------------------------------------KAIGSYHKTPITALCFSQDGSLL--AVS 527 (792)
T ss_pred Cc---cceEE------------------------------------------eeeeccccCcccchhhcCCCcEE--EEe
Confidence 11 01110 00111477789999999999776 556
Q ss_pred ceecccceeeee
Q 008058 370 LLKSKRGRYVQN 381 (579)
Q Consensus 370 ~d~~~~~w~~~~ 381 (579)
.|++|.+|+-.+
T Consensus 528 ~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 528 FDDTITIWDYDT 539 (792)
T ss_pred cCCEEEEecCCC
Confidence 799999999754
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=131.34 Aligned_cols=229 Identities=11% Similarity=0.088 Sum_probs=161.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--e--------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--F-------- 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~-------- 155 (579)
+.+|+.|+..|.|++|++.+......+...|...|+.+.--|+ ..+.+-+.|+.+.+|++..+..+.. +
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC 103 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC 103 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence 4458999999999999999988765554467888999999887 4678888999999999865321110 0
Q ss_pred ----e---------------------------------------cCCCCeeEEEEcc-CCC-EEEEEC---CeEEEEECC
Q 008058 156 ----R---------------------------------------ASTKGISCMAVSS-DGK-MLATAA---GQLKTFNCS 187 (579)
Q Consensus 156 ----~---------------------------------------~~~~~v~~l~~~p-~g~-~l~~~~---g~i~vwd~~ 187 (579)
. +..+.+.|..+.. +++ .++.++ |.+.+||+.
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S 183 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS 183 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence 0 0112344444322 232 334444 999999999
Q ss_pred CCeee----------EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-cceeEEeeecCceeeEeEEec
Q 008058 188 DHKKM----------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCID 256 (579)
Q Consensus 188 ~~~~~----------~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 256 (579)
++..+ .....|..+|.++.|.+.-..=++++ .+..+..|+++..... .......+.+++ +..+...
T Consensus 184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpG--v~gvrIR 260 (323)
T KOG0322|consen 184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPG--VSGVRIR 260 (323)
T ss_pred CCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCC--ccceEEc
Confidence 87433 33456899999999987655556666 5778999998764211 011222333332 3344444
Q ss_pred CCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCC
Q 008058 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (579)
Q Consensus 257 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~ 336 (579)
||++.+|+++.||+|+||+.++++.+..
T Consensus 261 -----pD~KIlATAGWD~RiRVyswrtl~pLAV----------------------------------------------- 288 (323)
T KOG0322|consen 261 -----PDGKILATAGWDHRIRVYSWRTLNPLAV----------------------------------------------- 288 (323)
T ss_pred -----cCCcEEeecccCCcEEEEEeccCCchhh-----------------------------------------------
Confidence 9999999999999999999887765432
Q ss_pred CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+..|...|.+++|+||..++ +.+|.|..|-+|++
T Consensus 289 --------LkyHsagvn~vAfspd~~lm-AaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 --------LKYHSAGVNAVAFSPDCELM-AAASKDARISLWKL 322 (323)
T ss_pred --------hhhhhcceeEEEeCCCCchh-hhccCCceEEeeec
Confidence 33678789999999999999 99999999999975
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.2e-16 Score=151.20 Aligned_cols=248 Identities=17% Similarity=0.185 Sum_probs=167.5
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEE
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT 183 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~v 183 (579)
..|.+.|+.+.|+|....|++++.||++++|+++. -+++.+|++|.++|.|+++.+++..+++|+ |+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 45888999999999999999999999999999932 257889999999999999999999999999 99999
Q ss_pred EECCCC----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058 184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 184 wd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
|++... .....+.||.+.|+.+++|+....|++++ .||+++.|+...... +++...........+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV 445 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence 966421 22456789999999999999988899987 699999999877653 233332222222333
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee---ecc--cCcccccccchhhhhccccceecCCce
Q 008058 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---SED--VNSKSQKSATAAIFAAKLQDIVKPASV 328 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 328 (579)
.+.. ....+.++...-|.--+++.+.+..+........... ... +.+... .+..+++..+..++.++
T Consensus 446 d~~s----s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~---~~~~~~~hed~~Ir~~d- 517 (577)
T KOG0642|consen 446 DRTS----SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT---ADITFTAHEDRSIRFFD- 517 (577)
T ss_pred eecc----chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC---CCeeEecccCCceeccc-
Confidence 3320 1112233322233333444444443332221111000 000 001111 12556666666666654
Q ss_pred EEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058 329 HTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 329 ~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
.........+..|...+.++++.|+|-+| +++++|+++++|.+...
T Consensus 518 -------n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 518 -------NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDVK 563 (577)
T ss_pred -------ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccch
Confidence 22233333566788899999999999999 99999999999998533
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=5.6e-16 Score=155.49 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=178.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+| .|+.|...|.++++|+.|..++||...++.+.....+|.+.+...+.+..
T Consensus 191 naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------------------------- 243 (1113)
T KOG0644|consen 191 NAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------------------------- 243 (1113)
T ss_pred hhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-------------------------
Confidence 456 67799999999999999999999999999999999999887776665544
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--------------
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------------- 149 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-------------- 149 (579)
+.++++++.|..|++|.+..+..+..+ .+|++.|++++|+|-. +.+.||++++||.+-.
T Consensus 244 --n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 244 --NTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred --hhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc
Confidence 677899999999999999999988544 7899999999999954 7789999999998610
Q ss_pred ceeeEee----------------cCCCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCC
Q 008058 150 SLLGKFR----------------ASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPG 200 (579)
Q Consensus 150 ~~~~~~~----------------~~~~~v~~l~~~p~g~~l~~~~-------------g~i~vwd~~~~~~~~~~~~h~~ 200 (579)
..+..+. +....+-+++|...+-.+++.. ..+.+|++.+|+....+.+|..
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 0010000 0011222333333333333322 3678999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 201 ~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
.+..+.++|-+..++-....||...|||+-.+... ..+... +...+. ..|+ ++|..++....-|.++|+.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d-~kFS-----qdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVD-GKFS-----QDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeec-cccC-----CCCceEecCCCCCceEEec
Confidence 99999999976655444448999999999988755 233333 333333 3454 8999999999999999998
Q ss_pred CCCceee
Q 008058 281 GQNIEEL 287 (579)
Q Consensus 281 ~~~~~~~ 287 (579)
...++..
T Consensus 467 ~gqs~s~ 473 (1113)
T KOG0644|consen 467 TGQSKSQ 473 (1113)
T ss_pred cCCCccc
Confidence 6655443
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.8e-15 Score=147.46 Aligned_cols=239 Identities=14% Similarity=0.185 Sum_probs=166.4
Q ss_pred EccCCCEEEE--EeCCCcEEEEECCCC-eEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 13 FSPALDYFAI--CSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 13 fs~dg~~las--~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
|..+..++|. .+.-|.|-||++..- ++.- .+..- -.-...++.+.|.|++ ...|
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-------gv~p~--------l~Ngt~vtDl~WdPFD--------~~rL 643 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-------GVMPG--------LFNGTLVTDLHWDPFD--------DERL 643 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc-------ccccc--------cccCceeeecccCCCC--------hHHe
Confidence 4445555553 344688999988642 2211 01000 1114467889999998 6679
Q ss_pred EEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 90 VLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
++++.||.|++|.+..+.. ....+..|...|+++.|+| ....|++++.|.+|++||+++++....+.+|.+.|
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI 723 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI 723 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence 9999999999999976532 2234467999999999999 45679999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCe-eeEEeecCC-CCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCcc
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK 234 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~~d----~~i~vwd~~~~~~ 234 (579)
..++|+|+|+.+++.+ |+|++|+-++++ .+..-++.. ..-..|.|.-+|++++..|. | +.|.+||.++-..
T Consensus 724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccC
Confidence 9999999999999988 999999988764 343332222 22346788899999998874 4 4688888776542
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECC
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 282 (579)
.. .....++..... -.-.++ +|. ..+++|-.|..|++|.+-
T Consensus 803 ~p-l~t~~lDvaps~-LvP~YD-----~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 803 RP-LYTQVLDVAPSP-LVPHYD-----YDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred Cc-ceeeeecccCcc-cccccc-----CCCceEEEecCCCceEEEEEec
Confidence 21 011122211111 111222 444 456677779999999753
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.5e-13 Score=139.79 Aligned_cols=270 Identities=14% Similarity=0.157 Sum_probs=179.0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccc----cccCccceEEeeeccccccccc--
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE----HLSVDYTCMKWLSVDRKKKRKL-- 84 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~~~~~~~~-- 84 (579)
-.||+|+++++.+.. ..|+||...+|.++..+..|..+.....+.+.-... -.....+...|...++...+-.
T Consensus 22 avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 379999998887774 589999999999999999888887776666541110 0011222233332211110000
Q ss_pred ---------------------------------------------------------------------CCcEEEEEECC
Q 008058 85 ---------------------------------------------------------------------GSSLLVLGTGG 95 (579)
Q Consensus 85 ---------------------------------------------------------------------~~~~l~~~~~~ 95 (579)
+...+.....+
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~ 180 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM 180 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence 00001111112
Q ss_pred CeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--C--ceeeEeecCCCCeeEEEEc
Q 008058 96 GDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--G--SLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 96 g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~--~~~~~~~~~~~~v~~l~~~ 168 (579)
..+.+|+..++.. .......|...+++.++||++++++++..||.|.+|.--. + .....+.-|...|++++|+
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence 2244444444221 0111234666789999999999999999999999996322 1 2334566688899999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee---
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM--- 243 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~--- 243 (579)
++|.+|++|+ +.+.+|.+.+++ .+-++.-.++|..+.++||+.+.+... .|+.|.+-...+..... .+..+
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~~ 336 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKPP 336 (792)
T ss_pred cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccCC
Confidence 9999999999 899999999987 344566788999999999999888776 79999999886554321 01111
Q ss_pred -----ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 244 -----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 244 -----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.........+.++ |..+.++-.+..|.|.+||+-+-+.+...
T Consensus 337 ~~~~k~~~~~l~t~~~id-----pr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSID-----PRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred CccccccccccceeEEEc-----CCCCceeecCCCceEEEEeccccceeeeE
Confidence 1123344556665 76677888889999999999887776443
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=9.3e-14 Score=143.29 Aligned_cols=287 Identities=14% Similarity=0.173 Sum_probs=195.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.|+|=...++++...-.|+|||++.+++...|...... ...++.+...... +..++++
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~-------D~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQ-------DDALLLT 1128 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeeccc-------chhheee
Confidence 89998888999887778999999999998877643311 2234445544433 2678999
Q ss_pred EECCCeEEEEEccCC-----eEEEEe--cCCC----CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008058 92 GTGGGDVLALAVSAG-----QLKWRL--SDCH----PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~-----~~~~~~--~~~h----~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 159 (579)
|+.||.|+||+-... +.+... +.++ .+.=.-+.|..+..+|+++|.-..|+|||......+..+....
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 999999999986432 222111 1111 1111345677777778888788999999998777766655433
Q ss_pred CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCC--EEEEEEecCCCE-EEEEecCCCeEEEEEcC
Q 008058 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGKY-VLSSAVGERYIALWRTD 230 (579)
Q Consensus 160 ~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~---~~~~~~~h~~~--v~~l~~~~~~~~-l~s~s~~d~~i~vwd~~ 230 (579)
..|+++.-+. .|+++++|. |.|++||.+... .+.....|... |..+.+-+.|-- |++++ .||.|++||++
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence 3677776543 468888886 999999998643 46777888877 999999886654 88887 79999999999
Q ss_pred CCccccceeEEeee-cC--ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccc
Q 008058 231 GVKKQSASCVLAME-HP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 231 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (579)
...... ..... +- +..+++.... +....+|+|+. +.|+||++.. +++..++..
T Consensus 1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n-------------- 1343 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN-------------- 1343 (1387)
T ss_pred cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecCh-hhhcccccC--------------
Confidence 853221 11111 11 2235556555 77888999988 9999999753 333222210
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+ +....+.+.+++|+|--.++ +.|+.|.++.++...
T Consensus 1344 ---------~~F-------------------------~~q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1344 ---------PGF-------------------------MGQRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCE 1381 (1387)
T ss_pred ---------ccc-------------------------ccCcCCCcceeeecchhHhh-hhccCCceEEEeecC
Confidence 000 00122356899999999999 889999999888763
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=4.4e-13 Score=121.03 Aligned_cols=232 Identities=16% Similarity=0.210 Sum_probs=163.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccc--cccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
++++|+.|..-+++|..+| .+||+++--+....-+.+.+ .+....|. .
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR-----------------------------~ 58 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR-----------------------------S 58 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh-----------------------------h
Confidence 6789999999999988776 79999875332211111111 11111111 2
Q ss_pred cEEEE-EECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeecC
Q 008058 87 SLLVL-GTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRAS 158 (579)
Q Consensus 87 ~~l~~-~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~ 158 (579)
++++. |+.+ ..|.|||=....++.++. -..+|.++.+.++ .|+.. ..+.|++|... +-+.++.+...
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE--eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence 34444 3333 349999977777776663 5689999999765 55555 56789999987 44555555433
Q ss_pred C--CCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEcC
Q 008058 159 T--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTD 230 (579)
Q Consensus 159 ~--~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~-i~vwd~~ 230 (579)
. .++.+++-+.+..+||.-+ |+|+|-|+...+. -..+..|.+.|.+++.+-+|..+++++ ..|+ |+|||..
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~ 212 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDTE 212 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEcC
Confidence 2 3455555444555666656 8999999987654 467789999999999999999999998 5665 8999999
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+++.. .-+.-+.....+.+++|+ |+..+|+++|+.|+++||.++..
T Consensus 213 ~g~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 DGTLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCcEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecC
Confidence 99865 334445556677888998 99999999999999999987654
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2.3e-15 Score=141.90 Aligned_cols=225 Identities=16% Similarity=0.221 Sum_probs=173.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+.|+.+|++|+.|+..|.|..+|+.++++..++.... .+. .+.|... .. +
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~------------------Dv~~LHn---------eq-~ 184 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVR------------------DVTFLHN---------EQ-F 184 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhh------------------hhhhhcc---------hH-H
Confidence 45899999999999999999999999999988775322 222 2333321 23 3
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (579)
++.....-++|||-..-+. ..+ ..| ..|..+.|-|.--+|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 185 ~AVAQK~y~yvYD~~GtEl-HCl-k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTEL-HCL-KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred HHhhhhceEEEecCCCcEE-eeh-hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 3444455688888654443 233 333 6799999999988899999999999999999999999998888999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc
Q 008058 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 170 ~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
-+-.+-+|. |+|.+|.....+++..+-.|.++|.+|++.++|+|++++| -|+.++|||++.-... ......++.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql---~t~~tp~~a 337 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQL---HTYRTPHPA 337 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccccc---ceeecCCCc
Confidence 888888887 9999999999999999999999999999999999999999 6999999999987633 111112332
Q ss_pred eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
..+.++ + +-+++.+....+.||.
T Consensus 338 ---~~ls~S------q-kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 ---SNLSLS------Q-KGLLALSYGDHVQIWK 360 (545)
T ss_pred ---cccccc------c-ccceeeecCCeeeeeh
Confidence 334443 2 3355566667899994
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-14 Score=136.44 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=149.9
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec--
Q 008058 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-- 197 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~-- 197 (579)
..++|+++|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++-+ ...+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS 227 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence 7899999999999999999999999888877777888999999999999999999988 7999999999977766542
Q ss_pred CCCCEEEEEEecCC---C-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058 198 HPGAVRFMTFSDNG---K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 198 h~~~v~~l~~~~~~---~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 273 (579)
.......+.|+.|+ . ++++....-+.|+.|++........-.....-.....+++...+ ++|++++.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence 23346678888776 3 23333324456777776544321000111122233456777777 899999999999
Q ss_pred CeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008058 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (579)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (579)
|.|-|++..+.+.++-.+ ..|...|+
T Consensus 303 GsVai~~~~~lq~~~~vk------------------------------------------------------~aH~~~VT 328 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK------------------------------------------------------EAHLGFVT 328 (398)
T ss_pred CcEEEEEeceeeeeEeeh------------------------------------------------------hhheeeee
Confidence 999999987665543211 25777899
Q ss_pred EEeecCCcceeeccccceecccceee
Q 008058 354 NLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+.|+||.+++ ++-|.|....+..+
T Consensus 329 ~ltF~Pdsr~~-~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 329 GLTFSPDSRYL-ASVSSDNEAAVTKL 353 (398)
T ss_pred eEEEcCCcCcc-cccccCCceeEEEE
Confidence 99999999999 88888888877766
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=7.5e-15 Score=128.77 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=112.5
Q ss_pred CCEEEEEEcc-CCC--EEEEEeCCCcEEEEeCCCCce----------eeEeecCCCCeeEEEEccCCCEEEEEC--CeEE
Q 008058 118 GGVSAISFAT-HGS--CIYSAGADGMVCEIDPLTGSL----------LGKFRASTKGISCMAVSSDGKMLATAA--GQLK 182 (579)
Q Consensus 118 ~~V~~l~~~~-~~~--~l~s~~~dg~v~iwd~~~~~~----------~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~ 182 (579)
+.+.+..+.. ++. .++.|..+|.|.+||+.++.. +.....|..+|.++.+.+.-..=++|+ ..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 4455555422 333 367788999999999998733 333446888999999987544445555 5778
Q ss_pred EEECCC--Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058 183 TFNCSD--HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 183 vwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
.|++.. +.+ -....-..-.|..+.+-||++.++++| +|+.|+||+.++.... ..+..|...+.+++|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pL-----AVLkyHsagvn~vAfs-- 302 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPL-----AVLKYHSAGVNAVAFS-- 302 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCch-----hhhhhhhcceeEEEeC--
Confidence 887753 222 122222344588899999999999998 9999999999998754 3445556778889998
Q ss_pred cccCCCcEEEEEEcCCeEEEEEC
Q 008058 259 GVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 259 ~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
|+...+|+++.|++|.+|++
T Consensus 303 ---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---CCCchhhhccCCceEEeeec
Confidence 89899999999999999985
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=139.53 Aligned_cols=178 Identities=20% Similarity=0.260 Sum_probs=137.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| +|-.|+|||.-|++++.||.|++|.. +|.+..++ ......+.|++|.|.+.+
T Consensus 104 ~~A~--~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl------------------~Q~~~~v~c~~W~p~S~~--- 159 (737)
T KOG1524|consen 104 AAAI--SSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV------------------VQNEESIRCARWAPNSNS--- 159 (737)
T ss_pred hhhh--hhcccCCCCceeeeecCCceEEEEec-cchHHHHH------------------hhcCceeEEEEECCCCCc---
Confidence 3566 77799999999999999999999984 45543222 222456779999987633
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
++-+..+.+.|=.+..+..+.+. ++|.+-|.++.|++..+.+++|+.|-..++||- .|+.+.+-..|..+|
T Consensus 160 -------vl~c~g~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 160 -------IVFCQGGHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI 230 (737)
T ss_pred -------eEEecCCeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence 44455566666666655544444 579999999999999999999999999999995 577887778899999
Q ss_pred eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
++++|+|+ +.++.++ +++++= +...+.|..++|++||..++.++ ..|.+.+
T Consensus 231 TSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGT-STGQLIV 282 (737)
T ss_pred eeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence 99999999 7777777 776621 23457899999999999988777 4665544
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1.5e-13 Score=127.73 Aligned_cols=243 Identities=18% Similarity=0.208 Sum_probs=165.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----------------eEEEEeccccccccccccccccccccccC
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----------------QVQTEFADIASTETTSLYGNRLEREHLSV 66 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (579)
..+|+.+ .|+|+|+.||+|+.+|.|.+|....- .....+.+|..
T Consensus 65 ~~aVN~v--Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~------------------ 124 (434)
T KOG1009|consen 65 TRAVNVV--RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD------------------ 124 (434)
T ss_pred cceeEEE--EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc------------------
Confidence 4567555 99999999999999999999976520 11122222322
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~ 146 (579)
.+-.++|.+. +.++++++.|..+++||+..|+..... .+|...|..++|.|-++++++-+.|...+.+++
T Consensus 125 diydL~Ws~d---------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 125 DIYDLAWSPD---------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred chhhhhccCC---------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceeee
Confidence 3334566554 788999999999999999999998655 689999999999999999999999987777776
Q ss_pred CCCceeeEee-------------------cCC----CCeeEEEEccCCCEEEEECC-----------eEEEEECCC-Cee
Q 008058 147 LTGSLLGKFR-------------------AST----KGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HKK 191 (579)
Q Consensus 147 ~~~~~~~~~~-------------------~~~----~~v~~l~~~p~g~~l~~~~g-----------~i~vwd~~~-~~~ 191 (579)
...+.++... -|. .....++|+|+|.++++..| ..++|+-.. .++
T Consensus 195 ~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 195 KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence 5332221111 011 13456799999999998762 235554332 345
Q ss_pred eEEeecCCCCEEEEEEecC------------------CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058 192 MQKFSGHPGAVRFMTFSDN------------------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 192 ~~~~~~h~~~v~~l~~~~~------------------~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
+..+++...++..+.|+|- +-.++.++ .+.|++||.+..... +... .-+-..++-.
T Consensus 275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v~-nihy~~iTDi 348 (434)
T KOG1009|consen 275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVVD-NIHYSAITDI 348 (434)
T ss_pred eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEEe-eeeeeeecce
Confidence 6666666666666666651 22344443 678999998886644 2222 2233344555
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
+|+ +||.+++..+.||-+.+-.++..+.
T Consensus 349 aws-----~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 349 AWS-----DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence 665 8999999999999888776665544
No 199
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=131.24 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=157.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|||+|+|+|+++.- ++.|=|..+-+..+.|... ..+.-+.|...+ -..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-------------------dki~yieW~ads--------~~il 64 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-------------------DKIVYIEWKADS--------CHIL 64 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-------------------HHhhheeeeccc--------eeee
Confidence 45999999999999854 7778887776654433210 123346676443 4567
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
.....++.|.+|++...+....+.. ...++.+++|+|||+.++ +..-|-.|.+|.+.+.+... ++-.+..+..++|+
T Consensus 65 C~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH 142 (447)
T ss_pred eeeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC
Confidence 7788899999999999998877754 567899999999997755 55568899999998766543 33344567899999
Q ss_pred cCCCEEEEECC-----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058 169 SDGKMLATAAG-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 169 p~g~~l~~~~g-----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
|||++.+..+. -+.+...+....++.+.-.+-..+.+.|+|||..+++ .|..+ .- .++..
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---wd~~L-------ey-----kv~aY 207 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---WDNVL-------EY-----KVYAY 207 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---ecchh-------hh-----eeeee
Confidence 99999999882 2333333334456666666677889999999988765 34321 00 00111
Q ss_pred ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
+-+.-+..+.++ |-+++|++|+.|+.+++.|--+-+.+
T Consensus 208 -e~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 208 -ERGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred -eeccceeEEEec-----cccceEEeeccchhhhhhceeeeeeh
Confidence 112223456676 88999999999999999875544443
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=137.46 Aligned_cols=137 Identities=23% Similarity=0.428 Sum_probs=115.3
Q ss_pred cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC--------------CeEEEEe-cC------------CCC
Q 008058 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA--------------GQLKWRL-SD------------CHP 117 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~--------------~~~~~~~-~~------------~h~ 117 (579)
...++|+.|.+.+ ...++++-.+|.+++||..- +...... .. --.
T Consensus 219 ktsvT~ikWvpg~--------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 219 KSSVTCIKWVPGS--------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred ccceEEEEEEeCC--------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence 4688999999987 67788999999999997531 1110000 00 012
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008058 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~ 195 (579)
+.|..++|+|||++|++.+.||.+||||..+.+.+..++..-+...|++|+|||++|++|+ ..|.||.+...+.+..-
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 4789999999999999999999999999999888888888888999999999999999999 79999999999999999
Q ss_pred ecCCCCEEEEEEec
Q 008058 196 SGHPGAVRFMTFSD 209 (579)
Q Consensus 196 ~~h~~~v~~l~~~~ 209 (579)
++|++.|+.++|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 99999999999983
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.1e-14 Score=134.38 Aligned_cols=285 Identities=19% Similarity=0.286 Sum_probs=193.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+-|+.+ -|...|..|++||.|.+|.+||+..+.....|.+ ||.......- |.|..
T Consensus 142 ~GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~NvfQaK-FiP~s----- 197 (559)
T KOG1334|consen 142 KGCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVFQAK-FIPFS----- 197 (559)
T ss_pred CCcccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchhhhh-ccCCC-----
Confidence 3556555 9999999999999999999999999988776642 3333222221 33333
Q ss_pred ccCCcEEEEEECCCeEEEEEccC-CeEE-EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee---
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSA-GQLK-WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR--- 156 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~-~~~~-~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~--- 156 (579)
+..-+++++.||.|++=.+.. +.+. ......|.++|.-++.-|+..+ |++++.|+.+.-+|++.+....++.
T Consensus 198 --~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 198 --GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred --CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence 145689999999999877653 3332 1223569999999999997665 9999999999999998875544332
Q ss_pred cCCC---CeeEEEEccCCC-EEEEEC--CeEEEEECCCCe------eeEEeecC------CCCEEEEEEecCCCEEEEEe
Q 008058 157 ASTK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSGH------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 157 ~~~~---~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~------~~~~~~~h------~~~v~~l~~~~~~~~l~s~s 218 (579)
.+.. ..+.++.+|... .+++++ .-+++||.+.-. .+.+|..| .-.|++++|+.++.-++++-
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence 2333 678899999766 666666 678999987432 23444322 24589999997776666654
Q ss_pred cCCCeEEEEEcCCCcc----------ccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 219 VGERYIALWRTDGVKK----------QSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
.|-.|+++.-..+.. ....+++.-.-+ ..+-.+-+|. |...|+++|++-|.|.||+-.+++.+
T Consensus 356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc-----CccceEEecCccceEEEEecchhHHH
Confidence 588899995443322 001111221112 2233344555 88999999999999999999999999
Q ss_pred cccCCceEEeeecccCcccccccchhhhhccccceec
Q 008058 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (579)
+-.++.+..+.|.. ...-.+.+++...+-.++
T Consensus 430 ~~MegDr~VVNCLE-----pHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLE-----PHPHLPVLASSGIDHDVK 461 (559)
T ss_pred HHhhcccceEeccC-----CCCCCchhhccCCcccee
Confidence 88888777777654 222244666666665333
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.5e-13 Score=138.94 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=138.9
Q ss_pred CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC---CeEEEEE
Q 008058 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALA 102 (579)
Q Consensus 26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd 102 (579)
+..|.+||..... ...+..+...+....|+++ ++.|+.++.+ ..|++||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~i~i~d 234 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD---------------------------GSKLAYVSFENKKSQLVVHD 234 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCC---------------------------CCEEEEEEecCCCcEEEEEe
Confidence 4689999986554 4445544444555555554 6667776643 3599999
Q ss_pred ccCCeEEE-EecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEE--EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058 103 VSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 103 ~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~i--wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
+.+++... ....+| ..+++|+|||+.|+.++ .+|.+.+ ||+.++.. ..+..+...+.+..|+|||+.++.++
T Consensus 235 l~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s 310 (429)
T PRK01742 235 LRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS 310 (429)
T ss_pred CCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE
Confidence 99886432 112333 34689999999888764 6776555 57665554 44555666788999999999877654
Q ss_pred ---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEE
Q 008058 179 ---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254 (579)
Q Consensus 179 ---g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (579)
|...||++... .....+ ++.. ....|+|+|++++.++ .++ +.+||+.+++.. . ..... ......
T Consensus 311 ~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~---~-lt~~~---~~~~~~ 378 (429)
T PRK01742 311 DRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTE---V-LSSTF---LDESPS 378 (429)
T ss_pred CCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeE---E-ecCCC---CCCCce
Confidence 66777765432 222223 3443 4578999999998876 454 666999887532 1 11111 112344
Q ss_pred ecCCcccCCCcEEEEEEcCCeEEEEECC--Cceeeccc
Q 008058 255 IDNGGVDDAGLYVLAISETGVCYIWYGQ--NIEELRNT 290 (579)
Q Consensus 255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~ 290 (579)
|+ |+|++|+.++.+|.+.+|.+- +++..+.+
T Consensus 379 ~s-----PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 379 IS-----PNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred EC-----CCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 66 999999999999988888752 34444433
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.5e-13 Score=140.59 Aligned_cols=189 Identities=15% Similarity=0.141 Sum_probs=126.2
Q ss_pred CcccceEEEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++ ...+|||||++|++++.+ ..|++||+.+++.... .... ++ .....|.|.
T Consensus 204 ~~v--~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--------------g~----~~~~~wSPD---- 258 (429)
T PRK01742 204 QPL--MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--------------GH----NGAPAFSPD---- 258 (429)
T ss_pred Ccc--ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--------------Cc----cCceeECCC----
Confidence 356 556999999999988754 3699999988764321 1111 11 113455543
Q ss_pred ccccCCcEEEEEE-CCCeE--EEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-ceeeEe
Q 008058 81 KRKLGSSLLVLGT-GGGDV--LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF 155 (579)
Q Consensus 81 ~~~~~~~~l~~~~-~~g~i--~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~-~~~~~~ 155 (579)
++.|+++. .+|.+ ++||+.++... .+ ..+...+.+..|+|||+.|+.++ .+|...+|++... .....+
T Consensus 259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred -----CCEEEEEEecCCcEEEEEEECCCCCeE-ee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 66666654 67764 45566666543 33 34667788999999999877655 5788888876432 222223
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
.+.. .+..|+|||+.++.++ ..+.+||+.+++.......+ ...++.|+|+|+++++++ .++.+.+|.+.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~ 401 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV 401 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence 3333 4678999999998877 67788999988654322222 335678999999999987 58888888763
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.6e-13 Score=140.04 Aligned_cols=242 Identities=17% Similarity=0.204 Sum_probs=169.2
Q ss_pred CCCEEEEEeCCCcEEEEEC-CC----CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 16 ALDYFAICSGDARIKIWDT-LK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
|...+.+|+.||.||||+- .+ .+.+..+.+..+- ..+..+. .....|...+ ..|+
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~----------~~~~r~~-~~v~dWqQ~~---------G~Ll 1181 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ----------LPGARGT-GLVVDWQQQS---------GHLL 1181 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeecccccc----------CccCCCC-CeeeehhhhC---------CeEE
Confidence 5568999999999999963 22 2334333322110 0111111 2456676653 3455
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCC--eeE
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKG--ISC 164 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~--v~~ 164 (579)
+++.-..|+|||.....+...+..+....|+++.-+- .|+.+++|..||.|++||.+.. ..+..++.|+.. |..
T Consensus 1182 ~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 5555788999999999988888777777788876543 4789999999999999998743 357778888886 999
Q ss_pred EEEccCCCE-EEEEC--CeEEEEECCCCee--eEEeecCC--C-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 165 MAVSSDGKM-LATAA--GQLKTFNCSDHKK--MQKFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 165 l~~~p~g~~-l~~~~--g~i~vwd~~~~~~--~~~~~~h~--~-~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
+.+.+.|-- |++|+ |.|++||++.... ..++..|- + ..+++..++....+++|+ . +.|+||++...+...
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceEEEEecChhhhcc
Confidence 999987654 88887 9999999997422 22222332 3 589999999999888876 4 899999998765432
Q ss_pred cee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
.+. -.-+........+..|. |..-.+|+|+.|..|.||.....
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence 110 00112233344778887 88889999999999999986654
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6e-13 Score=122.01 Aligned_cols=195 Identities=18% Similarity=0.324 Sum_probs=140.9
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..+|.+ +|++.-.-+|++..|-.|++||-.. .+...++ ......++|++|-|..
T Consensus 99 ~dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------ 152 (445)
T KOG2139|consen 99 IDLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------ 152 (445)
T ss_pred cceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC------
Confidence 345556 9999888889999999999999654 5444443 2235678999999876
Q ss_pred cCCcEEEEEECCCeEEEEEccCC----eEE-------EEe--cCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAG----QLK-------WRL--SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG 149 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~----~~~-------~~~--~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~ 149 (579)
...+++|+..| |.+|..... ..+ .++ ..+| .+|+++.|++||..+++++ .|..|.+||+.++
T Consensus 153 --aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg 228 (445)
T KOG2139|consen 153 --ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG 228 (445)
T ss_pred --cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence 55677777654 778876531 110 001 1345 6899999999999999987 5678999999998
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
..+....-..+.++-+.|+|||.++.++. +..++|+...........-..+.|....|+|+|++|+.+++ +.-.+|
T Consensus 229 ~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~ly 306 (445)
T KOG2139|consen 229 QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLY 306 (445)
T ss_pred CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEE
Confidence 87665544556889999999999998887 89999965443222223334558999999999999888775 444555
Q ss_pred EcC
Q 008058 228 RTD 230 (579)
Q Consensus 228 d~~ 230 (579)
.+.
T Consensus 307 sl~ 309 (445)
T KOG2139|consen 307 SLT 309 (445)
T ss_pred EEe
Confidence 554
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=4.7e-13 Score=136.00 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=169.0
Q ss_pred cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCE--EEEEeC
Q 008058 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSC--IYSAGA 137 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~--l~s~~~ 137 (579)
...++|+.+.+.+ +.+++.|+.+|.|.+||+..+.. +......|..+|+.+.|..+-.- |++++.
T Consensus 242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 4567888888887 77899999999999999987654 22333568999999999765444 999999
Q ss_pred CCcEEEEeCCCCce------eeEee------cCCCCeeEEEEccC-CCEEEEEC--CeEEEEE---CCCC-----eeeEE
Q 008058 138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSD-GKMLATAA--GQLKTFN---CSDH-----KKMQK 194 (579)
Q Consensus 138 dg~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd---~~~~-----~~~~~ 194 (579)
||.|..|+++.-.. ..... .....+++++|.+. -..+++|+ |.|.--+ .+.+ +....
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 99999998764322 11111 11237889999884 34566666 7776632 2222 12345
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC-CcEEEEEEcC
Q 008058 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET 273 (579)
Q Consensus 195 ~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d 273 (579)
+..|.++|..+.++|=+..++.++ .|-++++|....... +++........+..++|+ |. ...++++..|
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~ 463 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD 463 (555)
T ss_pred ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence 667889999999999887766666 499999999773321 234455555557777887 44 3567778889
Q ss_pred CeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008058 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (579)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (579)
|.|.+||+..... .| ... ...+.....
T Consensus 464 G~l~iWDLl~~~~----~P-------------v~s------------------------------------~~~~~~~l~ 490 (555)
T KOG1587|consen 464 GNLDIWDLLQDDE----EP-------------VLS------------------------------------QKVCSPALT 490 (555)
T ss_pred Cceehhhhhcccc----CC-------------ccc------------------------------------ccccccccc
Confidence 9999999743221 00 000 001122456
Q ss_pred EEeecCCcceeeccccceecccceeee
Q 008058 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.|+++|++| +.|..-|++.++++.
T Consensus 491 ~~~~s~~g~~l-avGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSPNGKLL-AVGDANGTTHILKLS 516 (555)
T ss_pred eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence 67789999999 999999999999984
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.2e-13 Score=125.12 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=126.8
Q ss_pred CcEEEEEECC--CeEEEEEccCCeEEEEecCCCC--------CCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC-cee
Q 008058 86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHP--------GGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLL 152 (579)
Q Consensus 86 ~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~--------~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~ 152 (579)
..++++|+.. ..+.+||+...+.+++-..-.. -.++++.|-+. ...|++++.-+.|++||.+.+ +++
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 5677888888 7799999999877655422111 23578899887 778999999999999999866 577
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
..|.....+++++...|+|+++++|. |.+..||++.++.... +.+..+.|++|..+|.+++++++| -|+.++|+|+
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~ 319 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDI 319 (412)
T ss_pred eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeec
Confidence 78887788999999999999999998 9999999999988766 889999999999999999999999 5999999999
Q ss_pred CCCccc
Q 008058 230 DGVKKQ 235 (579)
Q Consensus 230 ~~~~~~ 235 (579)
.+.+..
T Consensus 320 ktrkll 325 (412)
T KOG3881|consen 320 KTRKLL 325 (412)
T ss_pred ccchhh
Confidence 986543
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=2.5e-13 Score=130.56 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=144.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecC----CCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCC------------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT------------ 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~------------ 148 (579)
+--+++|-..|.|.+.|....+.. +++. -....|+++.|-|.+ ..++.+-.+|.+++||..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 667899999999999998763321 2111 123689999999954 4566777899999997531
Q ss_pred --Cc--------------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC
Q 008058 149 --GS--------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210 (579)
Q Consensus 149 --~~--------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 210 (579)
+. ++..+.-..+.|+..+|+|||++||+.+ |.++|||..+.+++..++..-+...|++|+||
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 11 1112222345788999999999999998 99999999998888888777788999999999
Q ss_pred CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC------------------------------cc
Q 008058 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG------------------------------GV 260 (579)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~ 260 (579)
|+|++++| +|.-|.||.+...+ .+..-..|...++.++|++- .-
T Consensus 344 GKyIvtGG-EDDLVtVwSf~erR-----VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~ 417 (636)
T KOG2394|consen 344 GKYIVTGG-EDDLVTVWSFEERR-----VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTG 417 (636)
T ss_pred ccEEEecC-CcceEEEEEeccce-----EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCC
Confidence 99999998 79999999998875 34555566777777777610 00
Q ss_pred cC-------------CCcEEEEEEcCCeEEEEECCCcee
Q 008058 261 DD-------------AGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 261 ~~-------------~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
+. ....+.+.+.|-++.+||+.....
T Consensus 418 S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 418 SAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 01 224678889999999999865443
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=6e-13 Score=118.51 Aligned_cols=205 Identities=10% Similarity=0.131 Sum_probs=149.3
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC--eEEEE------ecCCCCCCEEEEEEcc-CCCEEEEEe
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKWR------LSDCHPGGVSAISFAT-HGSCIYSAG 136 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~--~~~~~------~~~~h~~~V~~l~~~~-~~~~l~s~~ 136 (579)
.+.+.+.|.|...... .. +.++.+..+++|.+... +...+ ....+.++++++.|+. +-+++.+++
T Consensus 97 YP~tK~~wiPd~~g~~----pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVY----PD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCccceEecCCccccC----cc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4566777877652210 22 45566678999999842 22110 1235678999999987 677899999
Q ss_pred CCCcEEEEeCCCCce---eeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEE
Q 008058 137 ADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTF 207 (579)
Q Consensus 137 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~ 207 (579)
-|-+..+||++++.. ...+-+|...|..++|...+. .+++.+ |++++||++..+.-..+. ....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998733 445778999999999998654 666666 999999999765433332 22456778899
Q ss_pred ecCC-CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 208 SDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 208 ~~~~-~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
++.. +++++-..+...|.|.|++.... .+..+..|...+..+.|.+ ..+.+|+++++|.++.+||++..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCc----ceehhhcCcccccceEecC----CCCceeeecCCcceEEEEecccc
Confidence 8754 56777665667899999998753 3566777777788888873 35688999999999999998654
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.56 E-value=2.7e-15 Score=150.74 Aligned_cols=238 Identities=18% Similarity=0.171 Sum_probs=171.8
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~ 191 (579)
.+|...|+|+.|...|.++++|+.|..|+||.+.++.+...+++|.+.|+.++.+.+..++++++ ..|++|-+.++.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 47999999999999999999999999999999999999999999999999999999988999988 5799999999999
Q ss_pred eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 192 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 271 (579)
+..+.+|++.|++++|+|-- +++ .||++++||.+-.-.. ....-........+....|. .++..+++++
T Consensus 267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~-y~prp~~~~~~~~~~s~~~~-----~~~~~f~Tgs 335 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRI-YVPRPLKFTEKDLVDSILFE-----NNGDRFLTGS 335 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccc-cCCCCCCcccccceeeeecc-----cccccccccc
Confidence 99999999999999999864 444 7999999999822111 00000011222334445554 6788899999
Q ss_pred cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCC
Q 008058 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351 (579)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~ 351 (579)
.|+....|...-.. ......+-+.. +.+.. ...+++..+- ....+....+.....+.+|...
T Consensus 336 ~d~ea~n~e~~~l~---~~~~~lif~t~----ssd~~---~~~~~ar~~~--------~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA---WRSNLLIFVTR----SSDLS---SIVVTARNDH--------RLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred CCcccccchhhHhh---hhccceEEEec----ccccc---ccceeeeeee--------Eeeeeecccchhhhhhcccccc
Confidence 99999888753221 11100010110 11111 1233333321 1112222233334466789999
Q ss_pred cEEEeecCCcceeeccccceecccceeee
Q 008058 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+..+.+.|-..-++.+++.|++..+|++.
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 99999999888777999999999999985
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=135.83 Aligned_cols=229 Identities=15% Similarity=0.207 Sum_probs=160.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .|++||.||+.+|+|+.|..|.||+.+-...+ .+ +|.. .+.|+.+.|.
T Consensus 54 DtV--ycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D------------------~IQCMsFNP~------- 104 (1081)
T KOG1538|consen 54 DTV--YCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHND------------------AIQCMSFNPI------- 104 (1081)
T ss_pred ceE--EEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCC------------------eeeEeecCch-------
Confidence 346 67799999999999999999999986522221 11 2333 3445555554
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~ 160 (579)
...+++|+ -.+.-+|.......... .....|.+++|..||++++.|-.||+|.+-+ .+|+....+.. .+.
T Consensus 105 --~h~LasCs-LsdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 105 --THQLASCS-LSDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNS 177 (1081)
T ss_pred --HHHhhhcc-hhhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCC
Confidence 33344444 34567888776554321 2346799999999999999999999999987 45555444443 556
Q ss_pred CeeEEEEccCC-----CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 161 GISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g-----~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
+|.+++|+|.. ..+++.+ .++..|.+. |+.+.+-..-.-...++.+.++|.|++.+|+ |+.+.+|.-..-.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTRDGVR 255 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccC-CCceEEEeecCeE
Confidence 99999999953 4667776 577777764 4444333333344578899999999999994 9999998644422
Q ss_pred cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
.-+....+..+..+... |++++++.|+.||+|--|++
T Consensus 256 ------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 256 ------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhh
Confidence 23445556666666666 99999999999999999985
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=6e-13 Score=119.53 Aligned_cols=132 Identities=18% Similarity=0.333 Sum_probs=100.1
Q ss_pred CeEEEEEccCCe-EEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008058 96 GDVLALAVSAGQ-LKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (579)
Q Consensus 96 g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~ 172 (579)
|...+|.+.... ....+.....++|.+++|+|+|+.|+.. ..++.|.+||++ ++.+..+. ...++.+.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 345555553322 2223322345679999999999987654 457799999996 76766664 45778999999999
Q ss_pred EEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----CCeEEEEEcCCC
Q 008058 173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV 232 (579)
Q Consensus 173 ~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~-----d~~i~vwd~~~~ 232 (579)
++++++ |.|.+||.++.+.+.++. |. .++.+.|+|+|+++++++.. |+.++||+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999986 679999999988887765 33 47899999999999998753 788999998654
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=1.8e-12 Score=128.30 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=179.9
Q ss_pred CEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 18 DYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 18 ~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
++++ +-..+|.|.|.|..+.+.+..+...........|+++ ++++++++.||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence 4444 4456899999999999999988754433333445544 88899999999
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------CCCeeEEEEc
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS 168 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~ 168 (579)
.|.++|+.+++.+.++..+ ....++++++||+++++++ .++.+.++|.++.+.++.+... ...+.++..+
T Consensus 59 ~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp EEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred eEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 9999999999999888544 4578999999999988665 6899999999999998887643 2367788888
Q ss_pred cCCCEEEEEC---CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce------
Q 008058 169 SDGKMLATAA---GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS------ 238 (579)
Q Consensus 169 p~g~~l~~~~---g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~------ 238 (579)
|....++..- +.|.+.|....+.+. +............|+|+++|++.+...++.|.++|..+++.....
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence 8888666553 889888987654432 233345567789999999999887777889999998887533100
Q ss_pred ---eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058 239 ---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
....+.|+..-. ++.. ...+...++.-..+.+.+||..+.+.++.++..-...... .+|+++ .+.
T Consensus 217 ~~~~~~~~php~~g~--vw~~----~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~--thP~s~----~vw 284 (369)
T PF02239_consen 217 HPGPGANFPHPGFGP--VWAT----SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK--THPDSR----YVW 284 (369)
T ss_dssp EETTEEEEEETTTEE--EEEE----EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE----TT-S----EEE
T ss_pred cccccccccCCCcce--EEee----ccccceecccccCCccccchhhcCeEEEEEECCCCcceee--cCCCCc----cEE
Confidence 011111222111 0100 0223333333334456677777776665543221111111 144444 444
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeecccccee-cccceee
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLK-SKRGRYV 379 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~-~~~~w~~ 379 (579)
+....+. ....+.+.+-... ....++.. ....+..+.|++||+++-+|.-..+ .+.++|.
T Consensus 285 vd~~~~~---~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 285 VDTFLNP---DADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE-TT-S---SHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eeccCCC---CCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 4411110 0223333332222 22222221 2224899999999998745544333 5666664
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=6.3e-13 Score=120.08 Aligned_cols=206 Identities=8% Similarity=0.056 Sum_probs=156.0
Q ss_pred cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 008058 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~ 142 (579)
...++|.+|.+. ...++++..+.+|.||.....+ .....+..|...|++++|+|..+.|++|+.|..-+
T Consensus 10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 346778888775 7789999999999999998776 23344578999999999999999999999999999
Q ss_pred EEeCCCC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee----EEeecCCCCEEEEEEecCCCE
Q 008058 143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 143 iwd~~~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~ 213 (579)
+|....+ ++.-.+..++...+++.|+|.++.+++|+ ..|.||-.+...-- ..-+.+.+.|+++.|+|++-.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 9998433 34444566888999999999999999999 57888776543221 112456788999999999988
Q ss_pred EEEEecCCCeEEEEEcCCCcc------------cc-ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 214 VLSSAVGERYIALWRTDGVKK------------QS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
+++++ .|+..+++...-... .. ...+.........+..+.|+ |+|..|+-.+.|+.+.+=|
T Consensus 161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence 88776 799999997532110 00 00112222445566777787 9999999999999999988
Q ss_pred CCCce
Q 008058 281 GQNIE 285 (579)
Q Consensus 281 ~~~~~ 285 (579)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 76554
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.2e-12 Score=125.05 Aligned_cols=185 Identities=18% Similarity=0.283 Sum_probs=142.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec------CC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~ 159 (579)
..-|++++....|+-+++..|..+..+ .-..+.++++..++...+|++|+.+|.|..||.+....+.++.. |.
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred CccEEEeecCcceEEEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence 344778888889999999999987555 34568999999999999999999999999999998776665543 22
Q ss_pred C-----CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEc
Q 008058 160 K-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 160 ~-----~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~ 229 (579)
+ .|+++.|+.+|-.+++|. |.+.|||+++.+++..- .+..-+|..+.|.+. +..+++. +...++|||-
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~ 301 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE 301 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence 2 499999999999999998 99999999998876543 334567889999765 4455554 5788999999
Q ss_pred CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
.+++.. ..+..... +...|+- |++-+++++..++.+..|=++..
T Consensus 302 ~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 302 CTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcccc
Confidence 998754 22322333 4444554 89999999999998888865443
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=4.8e-11 Score=108.05 Aligned_cols=143 Identities=17% Similarity=0.309 Sum_probs=108.8
Q ss_pred EEEECCCeEEEEEccCC-eEEEEecC-CCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCce--eeEeecCCCCeeE
Q 008058 90 VLGTGGGDVLALAVSAG-QLKWRLSD-CHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL--LGKFRASTKGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~--~~~~~~~~~~v~~ 164 (579)
++.-..+.|++|...++ +.+..+.. ....++.+++-+.+..+|+.-+ .-|.|++-|+...+. ...+.+|...|.|
T Consensus 107 iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac 186 (346)
T KOG2111|consen 107 IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC 186 (346)
T ss_pred EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE
Confidence 44455678999998743 33333321 2234455555444555555543 568999999976655 4678999999999
Q ss_pred EEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 165 MAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g-~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
++++.+|..+|+++ | .|+|||..+|+.+.++... ...|.+|+|+|++.+|++++ +.|++.|+.++...
T Consensus 187 v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 187 VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 99999999999999 5 6999999999999998643 35699999999999999887 79999999998744
No 217
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.49 E-value=1.7e-14 Score=117.06 Aligned_cols=80 Identities=31% Similarity=0.462 Sum_probs=76.3
Q ss_pred eecccCChhhHHHHhhccChhhHHHHHHHHHHHHh-cCCCCcchhHHHHHHHHHHhcccccCC-CChhHHHHHHHHHHHH
Q 008058 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKVRKK 561 (579)
Q Consensus 484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~-~~~~~~~~~~~wl~~ll~~h~~~l~s~-~~l~~~l~~l~~~~~~ 561 (579)
++++.+|+++|++|+++||+.|+.+||+++++.++ +++.+.+++++|+++||+.|++||++. |++.+.|..|++.++.
T Consensus 8 ~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~ 87 (110)
T PF04003_consen 8 EVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE 87 (110)
T ss_pred HHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999888 788899999999999999999999999 9999999999999999
Q ss_pred hh
Q 008058 562 KL 563 (579)
Q Consensus 562 r~ 563 (579)
|+
T Consensus 88 ~~ 89 (110)
T PF04003_consen 88 RL 89 (110)
T ss_pred HH
Confidence 99
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.3e-11 Score=125.87 Aligned_cols=235 Identities=9% Similarity=-0.018 Sum_probs=147.1
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.+||....... .+ ..+...+.+..|+|||+.|+..+ .+..+++||+.+++.... ....+.+..++|+|||+.
T Consensus 180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 5899998766543 22 23567899999999999988654 245799999988764332 223334557899999998
Q ss_pred EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecC
Q 008058 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+... | .|++||+.+++.. .+..+...+....|+|||+.|+.++..++. |+++++.+++.. .+...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------~lt~~ 329 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------RITWE 329 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------EeecC
Confidence 88652 3 6999999887654 444455567889999999998887744444 444466555322 12222
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccccee
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (579)
........|+ |||++|+..+.+ ..|++||+++++...-..... .....++|+++ .|+.++.++.
T Consensus 330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~---~~~p~~SpDG~----~i~~~s~~~~- 396 (429)
T PRK03629 330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFL---DETPSIAPNGT----MVIYSSSQGM- 396 (429)
T ss_pred CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCC---CCCceECCCCC----EEEEEEcCCC-
Confidence 2223445666 999999887653 368889998875432111111 11223678877 6666666542
Q ss_pred cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
...+.+.. ........+.+|.+.+...+|||
T Consensus 397 ---~~~l~~~~--~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 397 ---GSVLNLVS--TDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---ceEEEEEE--CCCCCeEECccCCCCcCCcccCC
Confidence 11122221 01122334556777778888876
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.48 E-value=2.3e-12 Score=116.52 Aligned_cols=200 Identities=12% Similarity=0.156 Sum_probs=153.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
-.|| .|.+|++|+..+|.+-....|.||.....+ ..++++.|. ..++++.|.+.
T Consensus 10 ~~pi--tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd------------------~~vtgvdWap~--- 66 (361)
T KOG1523|consen 10 LEPI--TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD------------------KIVTGVDWAPK--- 66 (361)
T ss_pred cCce--eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC------------------cceeEEeecCC---
Confidence 3688 666999999999999999999999987665 344554443 35567888776
Q ss_pred cccccCCcEEEEEECCCeEEEEEc-cCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAV-SAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---- 152 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~-~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---- 152 (579)
.+.|++|+.|..-++|.. ..++.. ..+ ..++..++++.|+|.++.|++|+.-..|.+|-++....-
T Consensus 67 ------snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 67 ------SNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred ------CCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 556999999999999998 444432 223 358889999999999999999999999999987643321
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC-----CC-------------CeeeEEeecCCCCEEEEEEecCCC
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~-----~~-------------~~~~~~~~~h~~~v~~l~~~~~~~ 212 (579)
+.-+.+...|++++|+|++-++++|+ +..+||.. ++ |+++.++....+.|..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 12233456899999999999999998 77777643 21 233445545678899999999999
Q ss_pred EEEEEecCCCeEEEEEcCCCc
Q 008058 213 YVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.|+-.+ .|..+.+-|.....
T Consensus 220 ~lawv~-Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVG-HDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEec-CCCceEEeecCCCc
Confidence 999998 79999999987764
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=1.5e-10 Score=114.70 Aligned_cols=193 Identities=18% Similarity=0.215 Sum_probs=134.8
Q ss_pred CcEEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 86 SSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+++++ +-..+|.|.+.|..+.+.+.++..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34454 45567999999999999988885433 334567899999999999999999999999999999988544 5688
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
+++++||++++++. +.+.++|.++.+.++++... ...+..+..+|.+..++.+-.+.+.|.+-|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 89999999999999887543 346778888898886666654457787778776643
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecc
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 289 (579)
. ..... .......-..|+ |++++++++ ..++.|-++|.++++.+..
T Consensus 163 ~---~~~~i-~~g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 163 L---KVTTI-KVGRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp E---EEEEE-E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred c---ceeee-cccccccccccC-----cccceeeecccccceeEEEeeccceEEEE
Confidence 2 12222 223334445666 899987665 4577999999998876643
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.7e-11 Score=124.38 Aligned_cols=215 Identities=17% Similarity=0.176 Sum_probs=140.5
Q ss_pred CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---CCeEEEEEc
Q 008058 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV 103 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---~g~i~iwd~ 103 (579)
..|.+||...+. ...+..+...+....|+++ ++.|+..+. +..|++||+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpD---------------------------G~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPN---------------------------RQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCC---------------------------CCEEEEEEecCCCCEEEEEEC
Confidence 368888875443 3444444444444444443 666666653 356999999
Q ss_pred cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008058 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (579)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-- 178 (579)
.+++.. .+ ..+.+.+.+..|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+|||+.++..+
T Consensus 234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence 988764 22 34566788999999999865 5555554 78889887765 34554555667899999999888765
Q ss_pred ---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058 179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 179 ---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
..|++||+.+++. ..+..+...+....|+|+|++++..+... ..|.+||+..+... .+.... .....
T Consensus 311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------~lt~~~-~~~~p 382 (435)
T PRK05137 311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------ILTSGF-LVEGP 382 (435)
T ss_pred CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------eccCCC-CCCCC
Confidence 2789999876654 34444455667789999999998876323 36888887654321 111211 23445
Q ss_pred EecCCcccCCCcEEEEEEcC------CeEEEEECCCce
Q 008058 254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNIE 285 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 285 (579)
.|+ |||++|+..+.+ ..++++|+..+.
T Consensus 383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 566 999998876553 257777775543
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.1e-11 Score=125.17 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=119.9
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|....... .+ ..|...+.+..|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus 183 ~l~~~d~dg~~~~-~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVR-YL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcE-EE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 6888988655543 33 357788999999999999887753 468999999888653 34445667788999999998
Q ss_pred EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+.. + ..|++||+.+++. ..+..+........|+|||++++..+..++ .|++||+.+++.. .+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~------~lt~~ 332 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR------RISFG 332 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE------EeecC
Confidence 7644 3 3688899988764 456666666778999999999888764333 6888887765432 12112
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECC
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQ 282 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~ 282 (579)
........|+ |+|++|+..+.++ .|.+||..
T Consensus 333 ~~~~~~~~~S-----pdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 333 GGRYSTPVWS-----PRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCcccCeEEC-----CCCCEEEEEEcCCCceEEEEEECC
Confidence 2223345566 9999998876532 46666643
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.7e-11 Score=125.17 Aligned_cols=191 Identities=15% Similarity=0.187 Sum_probs=127.0
Q ss_pred eEEEEccCCCEEEEEeC---CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
...+|||||+.||..+. +..|.+|++.+|+..... ...... ....|.|.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~------------------~~~~~SPD--------- 253 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHN------------------GAPAFSPD--------- 253 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCc------------------CCeEECCC---------
Confidence 56799999999997653 457999999888643321 111111 12445543
Q ss_pred CcEEEEE-ECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceeeEeecCC
Q 008058 86 SSLLVLG-TGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~-~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..|+.. +.+| .|++||+.+++.. ++. .+...+....|+|||+.|+.++.+ + .|+.+|+.+++. ..+....
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~ 330 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEG 330 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCC
Confidence 5556554 4455 4999999988765 332 344567899999999988777654 3 455567766654 3333344
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe---EEEEEcCC
Q 008058 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY---IALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~---i~vwd~~~ 231 (579)
....+..|+|||+.++..+ ..|++||+.+++. ..+... .......|+|||++++.++ .++. +.++++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCC
Confidence 4566789999999988764 3689999988764 334322 2334678999999999887 4553 67777755
Q ss_pred Cc
Q 008058 232 VK 233 (579)
Q Consensus 232 ~~ 233 (579)
..
T Consensus 408 ~~ 409 (429)
T PRK03629 408 RF 409 (429)
T ss_pred CC
Confidence 43
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=9.6e-12 Score=111.76 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=107.9
Q ss_pred EEEEEccCCCEEEEEeC----------CCcEEEEeCC-CCceeeEeec-CCCCeeEEEEccCCCEEEEEC----CeEEEE
Q 008058 121 SAISFATHGSCIYSAGA----------DGMVCEIDPL-TGSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF 184 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~----------dg~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~----g~i~vw 184 (579)
..+.|+|+|.+|+.-.. -|...+|.++ .+..+..+.- ..++|.+++|+|+|+.+++.. +.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56788999988654332 1234444442 2233444433 344799999999999877653 689999
Q ss_pred ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC
Q 008058 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (579)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
|++ ++.+.++. ...++.+.|+|+|++++.++.. .|.+.+||.++.+. +....+.. ...+.|+ |
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P 153 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P 153 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence 996 66666664 5678899999999999998743 46799999996653 34444443 4667787 9
Q ss_pred CCcEEEEEEc------CCeEEEEECCCceeecc
Q 008058 263 AGLYVLAISE------TGVCYIWYGQNIEELRN 289 (579)
Q Consensus 263 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 289 (579)
+|+++++++. |+.++||+.. |+.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999999874 7899999984 555543
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=5.6e-10 Score=110.80 Aligned_cols=241 Identities=16% Similarity=0.220 Sum_probs=153.5
Q ss_pred EEEccCCCEEEEEeC----CCcEEEEECCC--CeEEE--EeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 11 TSFSPALDYFAICSG----DARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 11 ~~fs~dg~~las~s~----dg~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++++|++++|.++.. +|.|..|++.. +.+.. ...... .. -++...+++
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g------------------~~---p~~i~~~~~--- 97 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG------------------SS---PCHIAVDPD--- 97 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS------------------SC---EEEEEECTT---
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC------------------CC---cEEEEEecC---
Confidence 489999999998876 56888888765 34322 221100 01 111122222
Q ss_pred ccCCcEEEEEE-CCCeEEEEEccC-CeEEEE--ec----------CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008058 83 KLGSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (579)
Q Consensus 83 ~~~~~~l~~~~-~~g~i~iwd~~~-~~~~~~--~~----------~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~ 147 (579)
+.+++++. .+|.|.++++.. |..... .. ........++.|+|+|++++++. ....|++|++.
T Consensus 98 ---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 98 ---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp ---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred ---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 66677766 588999999987 443222 11 11234578999999999988775 34579999987
Q ss_pred CCc--e--eeEeec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeec----C--CCCEEEEEEec
Q 008058 148 TGS--L--LGKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSG----H--PGAVRFMTFSD 209 (579)
Q Consensus 148 ~~~--~--~~~~~~-~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~~~--~~~~~~----h--~~~v~~l~~~~ 209 (579)
... . ...+.. .......++|+|+|+++++.. +.|.+|++. ++.. +..+.. . ......|.++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 654 3 222332 334789999999999988876 899999988 4432 222221 1 12578899999
Q ss_pred CCCEEEEEecCCCeEEEEEcCC--CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEEC--CCc
Q 008058 210 NGKYVLSSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNI 284 (579)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~--~~~ 284 (579)
||++|+++...++.|.+|++.. ++.. .+............+.++ |+|++|++++. ++.|.+|++ ++|
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 9999999887888999999943 3322 233333334445666776 99999999885 679999975 455
Q ss_pred ee
Q 008058 285 EE 286 (579)
Q Consensus 285 ~~ 286 (579)
..
T Consensus 327 ~l 328 (345)
T PF10282_consen 327 KL 328 (345)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.6e-11 Score=125.93 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=121.9
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.+||...+... .+ ..+...+.+..|+|||+.|+.++. +..|++||+.+++... +....+...+++|+|||+.
T Consensus 185 ~l~i~D~~g~~~~-~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQ-TI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCce-Ee-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 5889998655433 33 346678999999999999888763 3469999998876543 3333445567899999997
Q ss_pred EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecC
Q 008058 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++.. + ..|++||+.+++. ..+..+........|+|||++++.++..++. |+++++.+++.. . .+. .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~-lt~--~ 334 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---R-LTF--Q 334 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---E-eec--C
Confidence 7643 2 3799999988764 4566666666788999999999887744554 666676665422 1 111 1
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCceee
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL 287 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~ 287 (579)
........|+ |+|++|+..+.++ .|.+||+.+++..
T Consensus 335 g~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 335 GNYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 1222345666 9999998876543 6999999877643
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.1e-12 Score=117.55 Aligned_cols=164 Identities=13% Similarity=0.159 Sum_probs=126.6
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeEeec-CCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGKFRA-STKGISCMAVSSDGKMLATAA--GQLKTF 184 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~--g~i~vw 184 (579)
.+|.+.|.++.|+.++++|++|+.|..+++|++.. .+++..... |...|.|++|....+.+++|. ++|...
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 47999999999999999999999999999999853 355554433 446899999999999999998 899999
Q ss_pred ECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC
Q 008058 185 NCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (579)
Q Consensus 185 d~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
|+.+.+.+..+.. ..+.|..+..+|..+.|++.+ .++.|.+||.+..... ...+.. .........+-|.+ .
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~~-~~~~~~-AN~~~~F~t~~F~P----~ 205 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQNP-ISLVLP-ANSGKNFYTAEFHP----E 205 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEe-cCceEEEEeccCCCCC-Cceeee-cCCCccceeeeecC----C
Confidence 9999998877752 235899999999988888887 7999999999886522 112222 22233333444542 2
Q ss_pred CCcEEEEEEcCCeEEEEECCCc
Q 008058 263 AGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 263 ~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
...+|++.+..|-+.+||.+..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CceeEEeccccCCCCceeeccc
Confidence 4578888899999999997644
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3.1e-11 Score=123.82 Aligned_cols=213 Identities=14% Similarity=0.090 Sum_probs=138.5
Q ss_pred CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC---CeEEEEEc
Q 008058 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV 103 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd~ 103 (579)
.+|.+||...+ ....+..+...+....|+++ ++.|+..+.. ..|++||+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence 36889998644 33444444444444555554 6667766633 35999999
Q ss_pred cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008058 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (579)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-- 178 (579)
.+++... + ..+.+...+..|+|||+.++ +.+.+| .|++||+.+++.. .+..+.......+|+|||+.++.++
T Consensus 236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence 8887642 2 23344556889999999875 445555 5999999887653 4444555557789999999888765
Q ss_pred -C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058 179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 179 -g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
| .|+++|+.+++.. .+..+......++|+|+|++++..+..++ .|.+||+.+++.. .+.+... ....
T Consensus 313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------~Lt~~~~-~~~p 384 (433)
T PRK04922 313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------TLTPGSL-DESP 384 (433)
T ss_pred CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------ECCCCCC-CCCc
Confidence 3 5788888776543 23323344557899999999987653332 6999999876532 1222211 1233
Q ss_pred EecCCcccCCCcEEEEEEcC---CeEEEEECCC
Q 008058 254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~ 283 (579)
.|+ |||++|+..+.+ +.|++++...
T Consensus 385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 385 SFA-----PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred eEC-----CCCCEEEEEEecCCceEEEEEECCC
Confidence 565 999998887763 3677777754
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=7.9e-12 Score=114.03 Aligned_cols=251 Identities=15% Similarity=0.166 Sum_probs=164.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
-++.|+.+|++||+|..+|+|.++.-.... ....++.|...-. |. ..-.....+..+.|.+...
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFD---YL---kSleieEKinkIrw~~~~n----- 97 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFD---YL---KSLEIEEKINKIRWLDDGN----- 97 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccc---hh---hhhhhhhhhhhceecCCCC-----
Confidence 355899999999999999999999654222 2334444432211 10 1112234567788887642
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeE-----------------------------------EEEecCCCCCCEEEEEEccC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQL-----------------------------------KWRLSDCHPGGVSAISFATH 128 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~-----------------------------------~~~~~~~h~~~V~~l~~~~~ 128 (579)
...+++.+.|.+|++|.+..... ...+..+|+.-|+++.++.|
T Consensus 98 --~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 98 --LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred --ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 67788999999999998864211 11223468888999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-ce--eeEeecCC-----CCeeEEEEccCC-C-EEEEEC-CeEEEEECCCCeee----E
Q 008058 129 GSCIYSAGADGMVCEIDPLTG-SL--LGKFRAST-----KGISCMAVSSDG-K-MLATAA-GQLKTFNCSDHKKM----Q 193 (579)
Q Consensus 129 ~~~l~s~~~dg~v~iwd~~~~-~~--~~~~~~~~-----~~v~~l~~~p~g-~-~l~~~~-g~i~vwd~~~~~~~----~ 193 (579)
+..++++ .|-.|.+|++.-- +. +..++.+. .-|++..|+|.. + ++.+.+ |+|++-|++...+. +
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 9998887 6778999998633 22 22233332 357888999943 3 344445 99999999854221 1
Q ss_pred Ee------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-------------c-
Q 008058 194 KF------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------------A- 247 (579)
Q Consensus 194 ~~------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------------~- 247 (579)
.| .+--..|..+.|+++|+|+++-. =-+|++||+...... +.+.+-+ +
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccc
Confidence 11 12224578899999999998742 378999999665432 1111111 1
Q ss_pred --eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 248 --VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.... ++|+ .++.++++|+..+..++|+...|.
T Consensus 329 IfdKFe-c~~s-----g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFE-CSWS-----GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeE-EEEc-----CCcceEecccccceEEEecCCCCc
Confidence 1122 3343 688899999999999999966553
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.2e-11 Score=124.51 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=128.0
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|...... ..+ ..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus 177 ~L~~~D~dG~~~-~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQNA-QSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCCCc-eEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 477777744332 233 3467789999999999998877643 359999998887543 3333455678999999998
Q ss_pred EEEE-C--C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--CCccccceeEEeeecC
Q 008058 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~--g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~ 246 (579)
++.. + | .|+++|+.++. ...+..+........|+|||++++..+..++...+|.+. ++... . ....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~-lt~~-- 326 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---R-VTFT-- 326 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---E-EecC--
Confidence 8753 3 4 46666665554 455665666667789999999988776445666666654 33211 1 1111
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
........|+ |+|++|+..+.++ .|.+||+.+++...-...... ....++++++ .|+.++.+
T Consensus 327 g~~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~---~~p~~spdg~----~l~~~~~~ 391 (427)
T PRK02889 327 GSYNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRD---ESPSFAPNGR----YILYATQQ 391 (427)
T ss_pred CCCcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCc---cCceECCCCC----EEEEEEec
Confidence 1112234566 9999999887654 699999988764322211111 1123677777 55555443
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=125.44 Aligned_cols=205 Identities=14% Similarity=0.246 Sum_probs=149.3
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEe
Q 008058 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEID 145 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd 145 (579)
+.|+.|... |.+|++|+.|-.+.|||+...+.+..+..+|...|.++.|-| +++.+++|..|..|+++|
T Consensus 53 VN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 53 VNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 446666654 899999999999999999999988888899999999999999 567799999999999999
Q ss_pred CCCC----------ceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeee----------EEeecCCCCE
Q 008058 146 PLTG----------SLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKM----------QKFSGHPGAV 202 (579)
Q Consensus 146 ~~~~----------~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~----------~~~~~h~~~v 202 (579)
+... .....+..|...|..|+..|++ +.+.+++ |+|+-||++..... ..+...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9741 2344577788999999999998 6777887 99999999874221 1111122345
Q ss_pred EEEEEecCCC-EEEEEecCCCeEEEEEcCCCccc-------------cceeEEee--e----------cCceeeEeEEec
Q 008058 203 RFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQ-------------SASCVLAM--E----------HPAVFMDCRCID 256 (579)
Q Consensus 203 ~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~-------------~~~~~~~~--~----------~~~~~~~~~~~~ 256 (579)
.++.++|... +|++|+ .|-..++||.+...+. ...|+..+ . +-......+.|+
T Consensus 204 k~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 6889998766 556665 6899999995432110 00111111 1 111224556666
Q ss_pred CCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 257 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
|+|.-|++.-..-.|++||+..++..
T Consensus 283 -----pNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 283 -----PNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----CCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 99988888766679999998877654
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.9e-11 Score=113.55 Aligned_cols=191 Identities=10% Similarity=0.093 Sum_probs=141.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeE----EEEecCCCCCCEEEEEEccCCCEE-EEEeCC--CcEEEEeCCCCceeeEeecC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSCI-YSAGAD--GMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d--g~v~iwd~~~~~~~~~~~~~ 158 (579)
...|++|..+|.+.+|....+.. ...+. -..++..+.-++...+| ++|+.. ..+.+||+...+.+..-+.-
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 66799999999999999985431 11221 22567777777766554 557777 78999999887554433221
Q ss_pred ---------CCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 159 ---------TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 159 ---------~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
.-.++.+.|-+. ...|+++. +.+++||.+.+ +++..|.--..+++++...|++++++++. .-+.+
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchh
Confidence 125678888887 78888888 89999999976 56888887889999999999999988876 68999
Q ss_pred EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
..||++.++... ..+..-...++.+... |.+.++++++.|..++|||+++.+.+.
T Consensus 272 ~~FD~r~~kl~g----~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 272 AKFDLRGGKLLG----CGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred heecccCceeec----cccCCccCCcceEEEc-----CCCceEEeeccceeEEEeecccchhhh
Confidence 999999987541 1122333334444443 888999999999999999999865543
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.1e-11 Score=112.00 Aligned_cols=191 Identities=14% Similarity=0.259 Sum_probs=132.6
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEI 144 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iw 144 (579)
....-++|++- -..++++..|..|++||-.. ++...+.......|++++|-|.+. .|+.|+..| |.+|
T Consensus 99 ~dlr~~aWhqH---------~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW 167 (445)
T KOG2139|consen 99 IDLRGVAWHQH---------IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIW 167 (445)
T ss_pred cceeeEeechh---------hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEE
Confidence 34556777763 44578999999999999877 333344334456899999999654 466666555 8999
Q ss_pred eCCCC----ce--------eeEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEE
Q 008058 145 DPLTG----SL--------LGKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 145 d~~~~----~~--------~~~~~--~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 207 (579)
..... +. .+.++ +| .+|+++.|.+||..+++++ ..|.|||..++..+.-..-..+.++-+.|
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence 76421 11 11122 23 4899999999999999998 68999999998766544445677889999
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 208 ~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
+|||.+|+++. -|+..++|+....... .-... ... .+...+|+ |.|++|+.+.. |.=.+|.
T Consensus 247 SPdgd~lfaAt-~davfrlw~e~q~wt~---erw~l-gsg-rvqtacWs-----pcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 247 SPDGDVLFAAT-CDAVFRLWQENQSWTK---ERWIL-GSG-RVQTACWS-----PCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred cCCCCEEEEec-ccceeeeehhccccee---cceec-cCC-ceeeeeec-----CCCCEEEEEEc-CCceEEE
Confidence 99999999887 6999999965443211 11122 222 56677787 99998876654 3334444
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.7e-11 Score=121.41 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=114.2
Q ss_pred CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEE--eCCCCceeeEeecCC
Q 008058 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iw--d~~~~~~~~~~~~~~ 159 (579)
++.|+..+.. ..|++||+.+++... + ....+.+.+..|+|||+.|+ +.+.+|...+| |+..+. ...+..+.
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 283 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS 283 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence 6667766543 349999999887642 2 22335567899999999876 45677765555 554444 44555455
Q ss_pred CCeeEEEEccCCCEEEEEC---Ce--EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008058 160 KGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~ 232 (579)
.......|+|||+.++..+ |. |+++++.+++. ..+..+........|+|+|++++..+..++ .|.+||+.++
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 5567789999999887655 44 44455555543 222222333456789999999987763222 6999999887
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEEC
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYG 281 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~ 281 (579)
+.. .+.... ......|+ |||++|+.++.++ .+++.+.
T Consensus 363 ~~~------~lt~~~-~~~~p~~s-----pdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 363 QVT------ALTDTT-RDESPSFA-----PNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CeE------EccCCC-CccCceEC-----CCCCEEEEEEecCCCEEEEEEEC
Confidence 532 111111 12344566 9999998887644 3555555
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=124.14 Aligned_cols=275 Identities=11% Similarity=0.089 Sum_probs=191.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCC-Ccee--eEeecCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLT-GSLL--GKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~-~~~~--~~~~~~~~ 160 (579)
+..+++|+.|..|.+||...+.....+..+|...|....|-|. .+.+++++.||.|++=.+.. +.+. ..+..|.+
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g 233 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG 233 (559)
T ss_pred CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence 8899999999999999999999988999999999999999883 45699999999999876543 3322 33556889
Q ss_pred CeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEee---cCCC---CEEEEEEecCCC-EEEEEecCCCeEEEEEcC
Q 008058 161 GISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFS---GHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD 230 (579)
Q Consensus 161 ~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~---~h~~---~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~ 230 (579)
+|.-++.-|+..+ |.+++ +.+.-+|++++.+...+. .+.. ....++..|... .+++++ .|..+++||.+
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R 312 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR 312 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence 9999999997653 45555 788889999876544332 2333 456788888776 566666 69999999987
Q ss_pred CCcccc------ceeE-EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee------------ecc-c
Q 008058 231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE------------LRN-T 290 (579)
Q Consensus 231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~-~ 290 (579)
.-.... .-|. .........+.++.|+ .++.-+.+.-.|-.|++|+-.-+.- +.. .
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 643221 0000 0111344557788887 6778888888888999995322111 111 2
Q ss_pred CCce--EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc
Q 008058 291 KATK--ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (579)
Q Consensus 291 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~ 368 (579)
++++ ..+.....|.|... ++++|+..|+|++|+ ......++-+.+-..-|.|+--.|--..| +|+
T Consensus 388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~--------K~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS 454 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWD--------KKTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS 454 (559)
T ss_pred cccccccccceeeeccCccc----eEEecCccceEEEEe--------cchhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence 2222 12344455666555 899999988777654 22333333445544467888788888888 999
Q ss_pred cceecccceee
Q 008058 369 SLLKSKRGRYV 379 (579)
Q Consensus 369 s~d~~~~~w~~ 379 (579)
+-|..||+|.=
T Consensus 455 Gid~DVKIWTP 465 (559)
T KOG1334|consen 455 GIDHDVKIWTP 465 (559)
T ss_pred CCccceeeecC
Confidence 99999999953
No 236
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.8e-12 Score=122.71 Aligned_cols=207 Identities=18% Similarity=0.334 Sum_probs=145.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++-|+++ +|+.||.+|++||.|-.+.|||.-..+.++.+. .||.. .+.++.|.|..
T Consensus 49 H~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------TgHta-NIFsvKFvP~t---- 105 (758)
T KOG1310|consen 49 HTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------TGHTA-NIFSVKFVPYT---- 105 (758)
T ss_pred ccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeee----------------ccccc-ceeEEeeeccC----
Confidence 35678666 999999999999999999999998888877764 24543 23355565543
Q ss_pred cccCCcEEEEEECCCeEEEEEccC---------CeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCce
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSA---------GQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~---------~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~ 151 (579)
++.++++|..|..|+++|+.. .+........|...|.-++..|++ ..+.+++.||+++-+|++....
T Consensus 106 ---nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 106 ---NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ---CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 267899999999999999985 122223446789999999999998 6799999999999999986321
Q ss_pred -ee---------EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC--------C----------eeeEEe-ecCC
Q 008058 152 -LG---------KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD--------H----------KKMQKF-SGHP 199 (579)
Q Consensus 152 -~~---------~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~--------~----------~~~~~~-~~h~ 199 (579)
.. .+...--...|+.++|... +|++|+ --.++||.+. + .++..| ++|-
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 11 1111112567899999655 566666 4788999431 1 122223 2332
Q ss_pred --------CC---EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 200 --------GA---VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 200 --------~~---v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.. ++-+.|+|+|.-|+..- ....|+++|+..++..
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP 308 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence 11 45678999998777654 3557999999887644
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-10 Score=122.62 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=128.4
Q ss_pred CcEEEEEECCCeEEEEEccCC-------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------ce
Q 008058 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SL 151 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~ 151 (579)
+.++++|+.||+|++||...- +...++ ......+.++.+.+.+..++.++.||.|++.++... .+
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence 689999999999999998741 112222 124578999999999999999999999999988652 12
Q ss_pred eeEeecCCC--CeeEEEEcc-CCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058 152 LGKFRASTK--GISCMAVSS-DGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 152 ~~~~~~~~~--~v~~l~~~p-~g~-~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~~d~~ 223 (579)
.+....+.. -|..-++.. ++. .++.+. +.|..||+++.....++ ....+.|++++.+|.+.++++|. ..|.
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-s~G~ 1218 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQ 1218 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-CCce
Confidence 222222222 233334433 233 455554 89999999987654444 33457899999999999999988 5899
Q ss_pred EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc--CCeEEEEECCCce
Q 008058 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIE 285 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~ 285 (579)
+.+||++-+... +.+..++...... ++.++. .|.....++++. .+-|.+|++.+|.
T Consensus 1219 l~lWDLRF~~~i---~sw~~P~~~~i~~-v~~~~~--~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPI---LSWEHPARAPIRH-VWLCPT--YPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEEEEeecCcee---ecccCcccCCcce-EEeecc--CCCCceEEEecccCCCceeeeecccCc
Confidence 999999988754 3344444332222 222211 144455555544 7789999998884
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=2.4e-09 Score=106.25 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=165.3
Q ss_pred EEEEECC----CeEEEEEc--cCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCC--c--eeeE
Q 008058 89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK 154 (579)
Q Consensus 89 l~~~~~~----g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~--~--~~~~ 154 (579)
+++|+.. +.|..|++ .+++....-...-......++++|++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566655 57888888 5555432111123355678899999999999976 568988887653 3 3334
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE---ee--c--------CCCCEEEEEEecCCCEEEEE
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK---FS--G--------HPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~~~~---~~--~--------h~~~v~~l~~~~~~~~l~s~ 217 (579)
..........++++|++++++++. |.|.++++.. +..... +. + ......++.|+|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 443445678899999999999986 8999999987 433222 21 1 12447899999999999988
Q ss_pred ecCCCeEEEEEcCCCcc-ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECC--Ccee--ecccC
Q 008058 218 AVGERYIALWRTDGVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIEE--LRNTK 291 (579)
Q Consensus 218 s~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~--~~~~~ 291 (579)
......|.+|++..... ......... ....-.+-+.|+ |+++++.+.++ ++.|.+|++. ++.. +....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 76777899999987652 111112222 233334556676 89999888776 7899999887 4321 11111
Q ss_pred Cc----e-EEeeecccCcccccccchhhhhcccc-ceecCCceEEEEEeCC-CCCceeEEEecCCCCcEEEeecCCccee
Q 008058 292 AT----K-ILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL 364 (579)
Q Consensus 292 ~~----~-~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (579)
.. . ........++++++ .++++... +.+ .++..... ......+.+......-..++++|||++|
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI-----~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSI-----SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEE-----EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred eccccccccCCceeEEEecCCC----EEEEEeccCCEE-----EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 00 0 00111122466666 55555442 111 11111111 1112222333223346899999999999
Q ss_pred eccccceecccceeee
Q 008058 365 PMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 365 ~~s~s~d~~~~~w~~~ 380 (579)
.++...++.+.++++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 6666677888888874
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=3e-12 Score=121.13 Aligned_cols=230 Identities=16% Similarity=0.215 Sum_probs=163.4
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.|+++ .|=.+.++||++- ..-+.|||- .|..++-++.+. .+..+-| .|.
T Consensus 172 tv~Dv--~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~~-~v~rLeF------------------LPy-------- 220 (545)
T KOG1272|consen 172 TVRDV--TFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRHI-RVARLEF------------------LPY-------- 220 (545)
T ss_pred hhhhh--hhhcchHHHHhhh-hceEEEecC-CCcEEeehhhcC-chhhhcc------------------cch--------
Confidence 45555 8888888888876 457899995 476666665432 1222222 221
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
--+|++++..|-++.-|+.+|+.+..+.. -.+.+..++-+|-+..+-.|...|+|.+|.....+++..+..|.++|.+
T Consensus 221 -HfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s 298 (545)
T KOG1272|consen 221 -HFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS 298 (545)
T ss_pred -hheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence 34577888889999999999999877754 4578899999998889999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC-CCccccceeEE
Q 008058 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD-GVKKQSASCVL 241 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~ 241 (579)
|++.++|+++++++ ..++|||+++...+.++.. ..+...++||..| +++.| ....|.+|.=. .+.........
T Consensus 299 iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d~~~~s~~~~~pYm 374 (545)
T KOG1272|consen 299 IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALS-YGDHVQIWKDALKGSGHGETPYM 374 (545)
T ss_pred EEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeee-cCCeeeeehhhhcCCCCCCcchh
Confidence 99999999999998 8999999998876666553 4567788998777 33444 45679999532 21100000111
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 277 (579)
.. .-...+..+.|. |-...|-.|...|--.
T Consensus 375 ~H-~~~~~V~~l~Fc-----P~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 375 NH-RCGGPVEDLRFC-----PYEDVLGIGHAGGITS 404 (545)
T ss_pred hh-ccCcccccceec-----cHHHeeeccccCCcee
Confidence 11 112244555565 6666666666655333
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.34 E-value=2.1e-10 Score=104.29 Aligned_cols=234 Identities=12% Similarity=0.186 Sum_probs=153.2
Q ss_pred CCcccceEEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccc-----------------
Q 008058 3 SSNIRDILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL----------------- 64 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 64 (579)
++++ .+++|||||+.+. +...|-+|.||.+.+.+... ++-....+....|+++ |..
T Consensus 91 ~agl--s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d---g~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 91 QAGL--SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD---GQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred CCcc--eeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC---CceeeeeecccHHHHHHHHh
Confidence 4566 6669999997555 55668999999998776543 2223333344455544 211
Q ss_pred -------------cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE
Q 008058 65 -------------SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131 (579)
Q Consensus 65 -------------~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 131 (579)
..+.+.+.|.|. + ..+-+||..-.-.+..+ .-.-++..+.|+|.+++
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPd---------g---------~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPD---------G---------NWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQF 224 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCC---------C---------cEEEEecchhhheeeee--eeccceeEEEeccccce
Confidence 122333444443 2 23556664433222222 12357899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEe--------------------------------------------------------
Q 008058 132 IYSAGADGMVCEIDPLTGSLLGKF-------------------------------------------------------- 155 (579)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~-------------------------------------------------------- 155 (579)
++.|+.|+.+|+.+--+.+.+..|
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 999999999988654332211111
Q ss_pred ----e------cCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 156 ----R------ASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 156 ----~------~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
+ ...-.+.-++|++|..++++-. +.+.+||++..+....+. ...+|....|+|....|+.+. +.
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct-g~ 382 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT-GK 382 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc-CC
Confidence 1 1122566789999999999976 789999998876654443 567899999999988888876 46
Q ss_pred CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
..+++|...... + ...+.++-.+..+.|. .+|..++-.+.|.-
T Consensus 383 srLY~W~psg~~-----~-V~vP~~GF~i~~l~W~-----~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 383 SRLYFWAPSGPR-----V-VGVPKKGFNIQKLQWL-----QPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEEEcCCCce-----E-EecCCCCceeeeEEec-----CCCcEEEEEcCCce
Confidence 679999887643 1 2233445556666776 78888888888763
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=4.5e-09 Score=97.70 Aligned_cols=245 Identities=14% Similarity=0.168 Sum_probs=155.4
Q ss_pred EEEccCCCEEEEEeC---CCcEEEEECCC--CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 11 TSFSPALDYFAICSG---DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 11 ~~fs~dg~~las~s~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
++|+|++++|.++.. +|.|..|.++. |++...=+.. ..|+ .- +..+.+++
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-------------~~g~---~p---~yvsvd~~------ 99 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-------------LPGS---PP---CYVSVDED------ 99 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-------------cCCC---CC---eEEEECCC------
Confidence 499999999998865 46777776664 5543211100 0011 00 11122222
Q ss_pred CcEEEEEEC-CCeEEEEEccC-CeEEEE-ecCCCCCC----------EEEEEEccCCCEEEEEeC-CCcEEEEeCCCCce
Q 008058 86 SSLLVLGTG-GGDVLALAVSA-GQLKWR-LSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~-~g~i~iwd~~~-~~~~~~-~~~~h~~~----------V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~ 151 (579)
+++++++.. .|.|.++-++. |..... -...|.++ +....|.|+++++++++. -..|.+|++..|+.
T Consensus 100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L 179 (346)
T COG2706 100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL 179 (346)
T ss_pred CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcc
Confidence 666766654 57799999976 332111 01235544 889999999999988863 33699999998764
Q ss_pred eeE---eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-eeeEEeec---------CCCCEEEEEEecCCCEEE
Q 008058 152 LGK---FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 152 ~~~---~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~-~~~~~~~~---------h~~~v~~l~~~~~~~~l~ 215 (579)
... .-........|.|+|++++..+.. ++|-+|..... ..+..++. .......|.++|||++|.
T Consensus 180 ~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 180 TPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 332 112345779999999999999887 89999998763 22222221 134567889999999999
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-eEEEEEC--CCcee
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG--QNIEE 286 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~--~~~~~ 286 (579)
++-.....|.+|.+...... ...+.....+....+...++ ++|++|+++++++ .|.+|.. ++|+.
T Consensus 260 asNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 88766678888888765322 11222223334444555565 8999999998854 7888854 44443
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=1.6e-09 Score=111.24 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=120.0
Q ss_pred CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEeCCCCceeeEeecCC
Q 008058 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (579)
++.++.++.. ..|++||+.+++.... ..+.+.+.+++|+|||+.|+. .+.++ .|++||+.++... .+..+.
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 277 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP 277 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence 6667766644 3699999998865422 234566778999999998764 44444 5899998877543 334344
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC---eEEEEEcCC
Q 008058 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~---~i~vwd~~~ 231 (579)
.......|+|||+.|+..+ ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++ .++ .|.+||+.+
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC
Confidence 4556779999999887654 2788899887654 34444556677889999999998887 454 788889877
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEEC
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYG 281 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~ 281 (579)
+... . +..... .....|+ |+|++|+..+.++ .+++.+.
T Consensus 356 ~~~~---~---l~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 356 GGER---V---LTDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEEC
Confidence 5422 1 111111 1223455 9999998887754 3455543
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.7e-09 Score=110.06 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=115.4
Q ss_pred EEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEeCCCC---ceeeEeecCC
Q 008058 90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG----MVCEIDPLTG---SLLGKFRAST 159 (579)
Q Consensus 90 ~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg----~v~iwd~~~~---~~~~~~~~~~ 159 (579)
++...+| .|.+.++.+++..... ...+......|+|||+.|+..+. +| .+..|++..+ +..+......
T Consensus 203 y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 3444444 4888899887653222 23445567899999998876653 22 3444776653 3333333223
Q ss_pred CCeeEEEEccCCCEEEEEC---C--eEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCC
Q 008058 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---g--~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~ 231 (579)
......+|+|||+.|+..+ | .|+++++.. +.....+..+...+....|+|||++|+..+..+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3446789999999877654 4 466666642 233445555556677899999999998876433 3699999988
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCCcee
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE 286 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~ 286 (579)
++.. .+...........|+ |||++|+..+. .+.|+++|+.+++.
T Consensus 361 g~~~------~Lt~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDY------QLTTSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeE------EccCCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 7643 121222223445666 99998876543 34688888877654
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=9.4e-10 Score=113.04 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=120.9
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|...+... .+ ..+...+.+..|+|||++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.
T Consensus 171 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQ-TI-TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4888887644432 33 2456678999999999998887643 479999998886543 3334556678999999997
Q ss_pred EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+.. + ..|++||+.+++. ..+..+........|+|+|++|+.++..++ .|++|++.+++.. .+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~ 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence 7654 3 3699999987754 344455555667899999999887764333 5777787765422 12222
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCce
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~ 285 (579)
........|+ |+|++|+.++.++ .|.+||+.++.
T Consensus 321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2223345566 9999999988876 78999987754
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=9.7e-09 Score=95.49 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=168.7
Q ss_pred EEEEECC----CeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCC--CCceee--Ee
Q 008058 89 LVLGTGG----GDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPL--TGSLLG--KF 155 (579)
Q Consensus 89 l~~~~~~----g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~--~~~~~~--~~ 155 (579)
+++|+.. .-|++|++.+. +......-.+.+.++-++|+|++++|+++..+ |.|..|.+. +|+... ..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 4455443 44999998743 32212223567889999999999999998654 667666554 354322 22
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCC----------EEEEEEecCCCEEEEEec
Q 008058 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGA----------VRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~--~~~~~~h~~~----------v~~l~~~~~~~~l~s~s~ 219 (579)
.....+.+.++++++|++++++. |.|.++-++. |.+ ...+..|.+. +....|.|++++++++..
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 22334558999999999999998 8999999875 432 2122335554 888999999999999877
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCc----eeecccCCce
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI----EELRNTKATK 294 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~----~~~~~~~~~~ 294 (579)
.-..|.+|++..++........ + .++.-.+-+.|. |++++....++ +++|.+|..+.. +.++.+....
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~-v-~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAE-V-KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceEEEEEcccCccccccccc-c-CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 6678999999977654322211 2 333334556666 99999998887 999999987763 2222221110
Q ss_pred -----EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCC---ceeEEEecCCCCcEEEeecCCcceeec
Q 008058 295 -----ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK---PSFQKILVNSGEDINLNCSQDGVLLPM 366 (579)
Q Consensus 295 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (579)
...++....+++++ +++++..- .+ .+.+..=.... ...+...-+...-....++++|++|.+
T Consensus 238 ~dF~g~~~~aaIhis~dGr----FLYasNRg-----~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGR----FLYASNRG-----HD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred cccCCCCceeEEEECCCCC----EEEEecCC-----CC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 11111112344554 44444331 01 11111101111 111112223334678899999999956
Q ss_pred cccceecccceeeee
Q 008058 367 SQSLLKSKRGRYVQN 381 (579)
Q Consensus 367 s~s~d~~~~~w~~~~ 381 (579)
+.-.+.++.+..+.+
T Consensus 308 a~q~sd~i~vf~~d~ 322 (346)
T COG2706 308 ANQKSDNITVFERDK 322 (346)
T ss_pred EccCCCcEEEEEEcC
Confidence 666667788887753
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.8e-09 Score=111.10 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=119.0
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|...+... .+ ..+...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.
T Consensus 180 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAV-TL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCce-EE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 3778887765543 33 2466789999999999998776543 369999998886543 3323345567899999998
Q ss_pred EEEE-C--C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~--g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++.. . | .|++||+.+++. ..+..+........|+|||+.++..+..++ .|+++++.+++.. .+ .. .
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~l-t~--~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RV-TF--V 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Ee-ec--C
Confidence 8743 3 3 799999988764 345556666777899999998887764444 5777787766532 11 11 1
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcC-C--eEEEEECCCcee
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE 286 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~ 286 (579)
........|+ |+|++|+..+.+ | .|.+||+.+++.
T Consensus 330 ~~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 330 GNYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 1122234566 999999887753 3 588899887754
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-09 Score=106.35 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=91.9
Q ss_pred cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 215 (579)
++++.++....+...+. ..++|.++.|+|+|+-++++. ..+.+||++. .++..|. .++-+.+-|+|.|++++
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~--egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP--EGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC--CCCccceEECCCCCEEE
Confidence 35555554222222222 367999999999999888776 5899999864 4565553 57778999999999999
Q ss_pred EEecCC--CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc------CCeEEEEECCC
Q 008058 216 SSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQN 283 (579)
Q Consensus 216 s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~ 283 (579)
.+|.++ |.+-+||+.+.+.+ ..... ...+...|+ |||.++++++. |+.++||+...
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a--~~tt~~eW~-----PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKA--ANTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EeecCCCCCceEEEeccchhhc-----ccccc--CCceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEecC
Confidence 998543 68999999986644 23222 233556676 99999999875 78899998743
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.5e-09 Score=108.20 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=116.9
Q ss_pred CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCC
Q 008058 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (579)
++.|+..+.+ ..|.+||+.+++... + ....+.+....|+|||+.|+ +.+.+| .|++||+.+++.. .+..+.
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 6666665533 359999999887642 2 22334456789999999876 444455 6888899877654 344455
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008058 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~ 232 (579)
.......|+|||+.++..+ ..|+++|+.+++... +...........|+|+|++++..+..++ .|.+||+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 5567789999999877655 368888988776432 2222223345789999999988764343 5888898876
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-C--eEEEEECC
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ 282 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~ 282 (579)
+.. . +...... ....|+ |+|++++..+.+ | .+++++..
T Consensus 366 ~~~---~---lt~~~~~-~~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 SVR---I---LTDTSLD-ESPSVA-----PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CEE---E---ccCCCCC-CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 532 1 1111111 123565 999999887654 3 46666664
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=2.3e-10 Score=102.51 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=145.2
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
++++.|++.|.-++++..+|.+.+-+-....... .++.|........|+.. +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~ 177 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E 177 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence 5788999999999999999999866555554443 67777666555555433 2
Q ss_pred CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceeeEeecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLT-GSLLGKFRASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v 162 (579)
++++++|+.||.+..||++ .++.+++-.+-|..+|.++.-+| .+.++++|+.|..|++||.+. ++++..-. -.+.|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV 256 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV 256 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence 6789999999999999999 56677665567999999999887 577899999999999999984 55554433 34789
Q ss_pred eEEEEccCCC--EEEEEC-CeEEEEECCCC--e---eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE-EEEcCCC
Q 008058 163 SCMAVSSDGK--MLATAA-GQLKTFNCSDH--K---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV 232 (579)
Q Consensus 163 ~~l~~~p~g~--~l~~~~-g~i~vwd~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~-vwd~~~~ 232 (579)
..+.++|.-. .++++- +-.+|-+.+.+ + .....+.|.+-+..-.|......+++++..|+.++ +|-.-++
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 9999999533 344444 56677666543 2 34455677777777778555567899888898855 7765444
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=2.4e-10 Score=118.85 Aligned_cols=191 Identities=11% Similarity=0.131 Sum_probs=147.0
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
.-+...++.+..++.+.+||...+.....+.... ...-++++.|...- + .-++++|+
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------r~~l~~~~~~g~s~-~------~~~i~~gs 152 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------RCTLYSSLIIGDSA-E------ELYIASGS 152 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------eEEEEeEEEEeccC-c------EEEEEecc
Confidence 3455678888888899999998777665543211 11222333332211 1 56789999
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCC
Q 008058 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGK 172 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~ 172 (579)
.-+.|.+|++...+... ...+|.+.|.++.|+-||++++++|.|.++++|++.+.+... +.-+|...|..++|+|+
T Consensus 153 v~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred ccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 99999999998444433 347999999999999999999999999999999999987766 66679999999999998
Q ss_pred EEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 173 ~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.+++++ -+.++|+.. +..+..+.+|. ..+..++..++....++++ .|+.+++|++...
T Consensus 230 ~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhcc
Confidence 788887 799999764 44555777786 4588999998888888887 7999999998654
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.6e-09 Score=109.65 Aligned_cols=175 Identities=12% Similarity=0.025 Sum_probs=114.4
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|....... .+ ..+...+.+..|+|||+.|+..+. ++ .|++||+.+++... +....+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~~~-~l-~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQ-ML-LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCce-Ee-ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 4777777655432 22 245678899999999999877653 33 58899998876533 2222334457899999998
Q ss_pred EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+... | .|+++|+.+++. ..+..+........|+|||++++..+..++ .|+++|+.+++.. . .+. .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~---~-Lt~--~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS---R-LTF--E 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE---E-Eec--C
Confidence 87643 3 689999987754 445556666778899999999887764444 4666677665432 1 111 1
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEc-CC--eEEEEECCCcee
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIEE 286 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~ 286 (579)
........|+ |||++|+..+. ++ .|.++|+.+++.
T Consensus 349 g~~~~~~~~S-----pDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 349 GEQNLGGSIT-----PDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCCCcCeeEC-----CCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 1111224566 99999888765 34 456678777653
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5.1e-09 Score=107.47 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=113.3
Q ss_pred CcEEEEEEC-CC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCCc--EEEEeCCCCceeeEeecCC
Q 008058 86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~-~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~dg~--v~iwd~~~~~~~~~~~~~~ 159 (579)
++.|+..+. ++ .|++||+.+++..... ...+......|+|||+.|+. .+.+|. |+++|+.+++.. .+..+.
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~ 305 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR 305 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence 666666543 33 4999999888753221 12233457899999998765 455664 888898877643 344445
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008058 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~ 232 (579)
......+|+|||+.++..+ ..|+++|+.+++... +..+........|+|||++++..+..++ .|.++|+.++
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5567889999999887655 368888888776433 2222223345789999999888764444 4555677666
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CC--eEEEEECC
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQ 282 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~ 282 (579)
+.. . +..... .....|+ |+|++|+..+. +| .+++++.+
T Consensus 385 ~~~---~---lt~~~~-d~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 385 AMQ---V---LTSTRL-DESPSVA-----PNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 432 1 111111 1112455 99998877665 33 36677763
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=4.6e-11 Score=119.25 Aligned_cols=203 Identities=12% Similarity=0.147 Sum_probs=139.0
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCC-eEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+++.++ ..+|.|+-+|.++.-|. .+-|+... ....-+. |. ....+....|.+-..
T Consensus 25 ~~~~a~--si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~----------------tpw~vad~qws~h~a---- 80 (1081)
T KOG0309|consen 25 GGFNAV--SINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HI----------------TPWQVADVQWSPHPA---- 80 (1081)
T ss_pred Ccccce--eeccccchhhhhhhcCe-EEEeccCCCCCceeee-cc----------------CcchhcceecccCCC----
Confidence 455444 78899998888887764 45565432 2211111 00 011223344544321
Q ss_pred ccCCcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRAS 158 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~ 158 (579)
..+-++.+...+-.+|++.. .+.+.-++.+|+..|+++.|+|+.. .+++++.|..|..||+++- ..+..+..-
T Consensus 81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 34556677777788899864 3344445578999999999999654 5899999999999999875 455555554
Q ss_pred CCCeeEEEEcc-CCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEcCCCcc
Q 008058 159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p-~g~~l~~~~-g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
......+.|+- ++..+++.. +.|.+||.+.| .++..+++|...|.++.|..- ...+.+++ .|++|+.||......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTT 236 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeeccccccc
Confidence 55667889987 455666655 79999999975 578889999999999998753 22456665 799999999877653
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=1.3e-09 Score=99.82 Aligned_cols=232 Identities=19% Similarity=0.278 Sum_probs=152.9
Q ss_pred cCCCEEEEEeCCCcEEEEE-CCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058 15 PALDYFAICSGDARIKIWD-TLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 15 ~dg~~las~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
|-.+-+.+.+.|.++|||- .+.++.-..+.. .....++++..... ...|++|-
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----------------~mP~~~~~~~y~~e---------~~~L~vg~ 87 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----------------YMPSPCSAMEYVSE---------SRRLYVGQ 87 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhh-----------------hCCCCceEeeeecc---------ceEEEEEE
Confidence 3334578899999999994 445554333321 11123344444433 56799999
Q ss_pred CCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058 94 GGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 94 ~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
.+|++.-+.+... ....+....|...|..+.|+.....+++++.|..+.---.+.+..+..+.- ....+++.+.-.
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL 166 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE
Confidence 9999998887642 222334467999999999999899999999998875545555544333221 111122222211
Q ss_pred CCEEEEEC--CeEEEEEC--CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 171 GKMLATAA--GQLKTFNC--SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 171 g~~l~~~~--g~i~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
+...|. |.|.+-.+ ..-.++.++.+|.+.+.++.|.|....++++. .|..+.+||+...+.. ...+..+
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~----~~el~gh 239 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT----AYELQGH 239 (404)
T ss_pred --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce----eeeeccc
Confidence 444554 55444433 34567889999999999999999999999987 6999999999877644 2233333
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
...+..++.. +--+.+.+++.||.|.+|+.+..+
T Consensus 240 ~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 240 NDKVQALSYA-----QHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhh-----hhheeeeeccCCCeEEEEecccee
Confidence 3344444444 556889999999999999986554
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.5e-10 Score=110.11 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=142.5
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+++. +..+++.|+ ...|+-++++.|+.+..|....+.++.+..++. ..+|+
T Consensus 140 ~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla 191 (703)
T KOG2321|consen 140 KYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLA 191 (703)
T ss_pred cccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCc---------------------------cceEE
Confidence 5543 334444444 446888899999988877755554444433333 67899
Q ss_pred EEECCCeEEEEEccCCeEEEEec-----CCCCC-----CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~-----~~h~~-----~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+|+.+|.|-.||..+...+..+. ..|.+ .|+++.|+.+|-.+++|..+|.|.+||+++.+++..- .|..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCC
Confidence 99999999999999876554442 12333 3999999999999999999999999999988876553 3443
Q ss_pred --CeeEEEEccC--CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 161 --GISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 161 --~v~~l~~~p~--g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+|..+.|.+. ++.+++.. ..++|||-.+|+....+. ....++.+++-|++-.++++- ++..+..|=+...
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~L 345 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPSL 345 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEec-CCCcceeEEcccc
Confidence 8999999775 67888888 899999999999988876 445699999999988888875 6776766665543
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=4.3e-09 Score=107.12 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=119.3
Q ss_pred eEEEEccCCCE--EEEEe-CCC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDY--FAICS-GDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~--las~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
++-+|||||+. ++..+ .+| .|.+.++.+|+... +....+..... .|.|.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p------------------~wSPD------- 241 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP------------------TFSPR------- 241 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce------------------EECCC-------
Confidence 45589999975 33233 333 57777888776432 22122222223 34332
Q ss_pred cCCcEEEEEEC-CC--eEE--EEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEE--eCCC-Ccee
Q 008058 84 LGSSLLVLGTG-GG--DVL--ALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL 152 (579)
Q Consensus 84 ~~~~~l~~~~~-~g--~i~--iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iw--d~~~-~~~~ 152 (579)
++.|+..+. +| .+. .|++..+ .....+..++.+.....+|+|||+.|+..+ .+|...+| ++.. +...
T Consensus 242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 555665543 33 344 4676653 122233333334456789999999877665 46654444 5432 2334
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEE
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA 225 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--d~~i~ 225 (579)
..+..+...+....|+|||+.|+... ..|++||+.+++.. .+......+....|+|||+.|+..+.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 44444455677899999999888764 47999999888654 344334466789999999988765532 34688
Q ss_pred EEEcCCCc
Q 008058 226 LWRTDGVK 233 (579)
Q Consensus 226 vwd~~~~~ 233 (579)
+|++.+++
T Consensus 399 ~vdl~~g~ 406 (428)
T PRK01029 399 LISLITKK 406 (428)
T ss_pred EEECCCCC
Confidence 88887765
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=2.1e-08 Score=101.31 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=142.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+..+++++.+|.|..+|..+|+.+..++........ + . . .+..+++++.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-----p------------~----v--------~~~~v~v~~~~ 114 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG-----V------------G----A--------DGGLVFVGTEK 114 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc-----e------------E----E--------cCCEEEEEcCC
Confidence 4668888888999999999999988776533210000 0 0 0 15678899999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~ 170 (579)
|.+..+|..+|+.+++.... +.+.+.-.. .+..++.++.+|.++.||..+|+.+..+......+ .+.... +
T Consensus 115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D 190 (377)
T ss_pred CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence 99999999999998776422 223221111 34567778889999999999999887765433211 111222 3
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeecCCC----C------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG----A------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~----~------v-~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+ .++.+. +.+..+|.++|+.+.+...... . + ....+ .+..++.++ .++.+..||..+++..
T Consensus 191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~-- 264 (377)
T TIGR03300 191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL-- 264 (377)
T ss_pred C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence 3 455554 8999999999987654321100 0 0 11112 234566665 6899999999888643
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
....... ..... ..+..+++++.||.++.+|..+++.+...
T Consensus 265 ---W~~~~~~--~~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 265 ---WKRDASS--YQGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---EeeccCC--ccCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 2222111 11111 24577888889999999999999877554
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=1.7e-08 Score=97.46 Aligned_cols=330 Identities=12% Similarity=0.050 Sum_probs=185.3
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
|+ ..++|||.|.+|++.... .|.+|.-..+..+..+. ...+....|++. +. --..|....-. -
T Consensus 34 p~--~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~---~k-----YL~tw~~~pi~---~- 96 (561)
T COG5354 34 PV--AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPN---EK-----YLVTWSREPII---E- 96 (561)
T ss_pred ch--hheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcc---cc-----eeeeeccCCcc---C-
Confidence 55 345999999999988765 48899877766555443 222333444433 10 01122211000 0
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC--EE-EEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eEeecC-C
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRAS-T 159 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~-~ 159 (579)
...-..=-+.+..+.+||+.+|..+..+. +...+ .+ -+.|+-+.++++-- ....++++++ ++... .-+..- .
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 00000111223369999999999987763 33333 44 67888888776544 3345899997 33221 112211 3
Q ss_pred CCeeEEEEccCCC--EEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec----------C
Q 008058 160 KGISCMAVSSDGK--MLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------G 220 (579)
Q Consensus 160 ~~v~~l~~~p~g~--~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~----------~ 220 (579)
..|....|+|.|+ .|+.=. +.+++|.+..+..+.+-.-..-.=..+.|.+.|++++.-.. +
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 4788889999643 344321 68999999877665543322223346788888887765321 2
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEee
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSS 298 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (579)
...++++++...... ... .....+...+|. |.++.+++.+ .+-.+.+||++..-...-.+..+..
T Consensus 254 esnLyl~~~~e~~i~-----V~~-~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT-- 320 (561)
T COG5354 254 ESNLYLLRITERSIP-----VEK-DLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNT-- 320 (561)
T ss_pred cceEEEEeecccccc-----eec-cccccceeeeec-----ccCCceeEEecccccceeecccccceEEecCCccccc--
Confidence 345788888744322 111 323445566676 7777766655 5889999998766222222212111
Q ss_pred ecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc--c----cee
Q 008058 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ--S----LLK 372 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~--s----~d~ 372 (579)
..|+|..+ .|+.+.++.. .|.+.+..-...+.+...+.+. ...-+.|||||+|+ .+. | .|+
T Consensus 321 --~~fsp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~Dn 387 (561)
T COG5354 321 --IFFSPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVDN 387 (561)
T ss_pred --ccccCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccCc
Confidence 23677777 7888777652 2333333222222222222222 24556699999987 332 2 389
Q ss_pred cccceeee
Q 008058 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
.+++|++.
T Consensus 388 ~i~l~~v~ 395 (561)
T COG5354 388 SIKLWDVY 395 (561)
T ss_pred ceEEEEec
Confidence 99999995
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.17 E-value=7.4e-08 Score=93.36 Aligned_cols=266 Identities=15% Similarity=0.068 Sum_probs=149.6
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceeeEeecCCC-----
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK----- 160 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~----- 160 (579)
+.|.+.|..+++.+..+..+.... .+ ++|||+.++.+.. +..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 889999999999988876554433 34 9999999887765 78999999999999988774222
Q ss_pred --CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 --~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
....++++|||+++++.. +.|.+.|+.+++.+.++.-.. . ..+--.++..+++.| .||......+.....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~-~~vy~t~e~~~~~~~--~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-C-YHIFPTANDTFFMHC--RDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-C-cEEEEecCCccEEEe--ecCceEEEEecCCCc
Confidence 334789999999999876 799999999999998886422 1 122222233333333 255554444433221
Q ss_pred ccceeEEeeecC-ceee-EeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce-----eecccCCceE--Eee----ecc
Q 008058 235 QSASCVLAMEHP-AVFM-DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-----ELRNTKATKI--LSS----SED 301 (579)
Q Consensus 235 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~--~~~----~~~ 301 (579)
.. ......-+. ...+ .--.|. ..+|+++.+..+ |+|++.|+.... .+........ .+. ...
T Consensus 180 ~~-~~~~~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 180 PK-IKPTEVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred eE-EeeeeeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 10 000111011 0000 000111 038888877776 999999954432 2211100000 000 001
Q ss_pred cCcccccccchhhhhcccc---ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccce
Q 008058 302 VNSKSQKSATAAIFAAKLQ---DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGR 377 (579)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w 377 (579)
.+.++++ .++.+... +.=......+++.+-.. ......+.. ...++.+++||||+ +|.++...++.+.+-
T Consensus 254 a~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 254 AYHRARD----RIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred EEcCCCC----EEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 1233333 22221111 11011123566655322 233333332 22689999999999 774455457777777
Q ss_pred eee
Q 008058 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
|+.
T Consensus 328 D~~ 330 (352)
T TIGR02658 328 DAE 330 (352)
T ss_pred ECc
Confidence 764
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=8e-10 Score=115.10 Aligned_cols=185 Identities=12% Similarity=0.133 Sum_probs=144.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC---EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
...+++++.+..+.+||...+.....+....... ..-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 5679999999999999999887765553221111 2233456667789999999999999987333333588999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.++.++.||+++++.+ .++++|++.+.+... +.-+|...|..+.|.|+ .+++++ .|.+.++|+.+..+..
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~---- 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE---- 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh----
Confidence 9999999999999998 899999999987765 66789999999999998 788887 8999999976654422
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
.-..|....+...... ++...+++++.||.+++|+...
T Consensus 252 -~y~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 252 -VYDEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -hhhhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhc
Confidence 1223555555555565 6778889999999999999654
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.16 E-value=1.9e-07 Score=90.57 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=149.9
Q ss_pred CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC----------CC
Q 008058 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG----------GG 96 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~----------~g 96 (579)
++|.|.|..+++.+..+.....+.. .++++ ++.++++.. ++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~~spD---------------------------g~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--VVASD---------------------------GSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--eECCC---------------------------CCEEEEEeccccccccCCCCC
Confidence 8999999999999888864332222 14433 566666665 67
Q ss_pred eEEEEEccCCeEEEEecCCC------CCCEEEEEEccCCCEEEEEe-C-CCcEEEEeCCCCceeeEeecCC---------
Q 008058 97 DVLALAVSAGQLKWRLSDCH------PGGVSAISFATHGSCIYSAG-A-DGMVCEIDPLTGSLLGKFRAST--------- 159 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~--------- 159 (579)
.|.+||+.+.+.+.++..+- ......++++|||++++... . +..|.+.|+.+++.+..+....
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 79999999999987775321 12345889999999998776 3 7899999999887665443110
Q ss_pred ---------C-------------CeeEE--------------EEcc-CCCEEEEEC-CeEEEEECCCC-----eeeEEee
Q 008058 160 ---------K-------------GISCM--------------AVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFS 196 (579)
Q Consensus 160 ---------~-------------~v~~l--------------~~~p-~g~~l~~~~-g~i~vwd~~~~-----~~~~~~~ 196 (579)
+ ..... .|.+ +|+++.... |.|++.|+... +.+..+.
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecc
Confidence 0 01111 1223 777777776 99999996432 2233222
Q ss_pred c-------CCCCEEEEEEecCCCEEEEEec---------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcc
Q 008058 197 G-------HPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV 260 (579)
Q Consensus 197 ~-------h~~~v~~l~~~~~~~~l~s~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (579)
. ..+.+.-++++|+++.++.... ..+.|.++|..+.+.. ..+.-. .....+.++
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-----~~i~vG-~~~~~iavS---- 307 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-----RKIELG-HEIDSINVS---- 307 (352)
T ss_pred ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-----EEEeCC-CceeeEEEC----
Confidence 1 2233445999999998887431 1257999999888744 233222 234455676
Q ss_pred cCCCc-EEEEEE-cCCeEEEEECCCceeeccc
Q 008058 261 DDAGL-YVLAIS-ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 261 ~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 290 (579)
||++ +|++.+ .++.|.++|..+++.++..
T Consensus 308 -~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 -QDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999 888777 5789999999999988776
No 262
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.14 E-value=2e-08 Score=97.00 Aligned_cols=308 Identities=14% Similarity=0.149 Sum_probs=185.5
Q ss_pred CcccceEEEEccCCCEEEEEeCCC---------------cEEEEECCCCeEEEEeccccccccccccccccccccccCcc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDY 68 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (579)
..|+.+ .|||+++||.+=+..+ .+.|||+.+|..+..|.....+ ....
T Consensus 72 ~~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------~~~W 134 (561)
T COG5354 72 PDVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------YLGW 134 (561)
T ss_pred CCceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------cccc
Confidence 346555 8999999999865433 4899999999999888754432 1122
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCE--EEE-----EeCCCc
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSC--IYS-----AGADGM 140 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~--l~s-----~~~dg~ 140 (579)
..+.|...+ .+ ++---...++++++ ++... ..+..-....|....|+|.++. |+. .+.+++
T Consensus 135 p~~k~s~~D---------~y-~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~ 203 (561)
T COG5354 135 PVLKFSIDD---------KY-VARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAM 203 (561)
T ss_pred ceeeeeecc---------hh-hhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcE
Confidence 234444432 11 22224556899997 44321 1111112357889999996543 333 357889
Q ss_pred EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEE------C-------CeEEEEECCCCeeeEEeecCCCCEEEEEE
Q 008058 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA------A-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~------~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 207 (579)
+++|.+..++.+.+-.-....=..+.|++.|+++++- + ..+++++++.. .+....+-.++|...+|
T Consensus 204 ~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W 282 (561)
T COG5354 204 VRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTW 282 (561)
T ss_pred EEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeee
Confidence 9999998776665422222223578899999887642 1 47889988743 33333366899999999
Q ss_pred ecCCCEEEEEe-cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCC
Q 008058 208 SDNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN 283 (579)
Q Consensus 208 ~~~~~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~ 283 (579)
.|.++.+++.+ ..+-.+.++|++..- ....+...-....|+ |.+++++.++- .|.+.+||...
T Consensus 283 ~p~S~~F~vi~g~~pa~~s~~~lr~Nl--------~~~~Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 283 EPLSSRFAVISGYMPASVSVFDLRGNL--------RFYFPEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cccCCceeEEecccccceeecccccce--------EEecCCccccccccc-----CcccEEEEecCCccccceEEeccCC
Confidence 99988776665 567889999998762 122333333455666 89999998766 46899999766
Q ss_pred ceeec-ccCCceEEeeecccCcccccccchhhhhccccceecCC-ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008058 284 IEELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA-SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (579)
Q Consensus 284 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (579)
.-.+. ......-..+ .++|+++ ++.++...-..+.. ...++-.+|... ...+.+.|.|.|
T Consensus 350 rf~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------fel~~~~W~p~~ 411 (561)
T COG5354 350 RFKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRVDNSIKLWDVYGAKV-----------FELTNITWDPSG 411 (561)
T ss_pred ceEEEEEeecCCceEe---eccCCce----EEEecCCCcccccCcceEEEEecCchh-----------hhhhhccccCCc
Confidence 54433 3333222222 1566655 44443322111211 112333333221 256778889989
Q ss_pred ceeecccccee
Q 008058 362 VLLPMSQSLLK 372 (579)
Q Consensus 362 ~~l~~s~s~d~ 372 (579)
++. .+.|.+.
T Consensus 412 ~~~-ttsSs~~ 421 (561)
T COG5354 412 QYV-TTSSSCP 421 (561)
T ss_pred ccc-eeeccCC
Confidence 887 4444343
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.14 E-value=7.5e-09 Score=101.74 Aligned_cols=190 Identities=13% Similarity=0.145 Sum_probs=148.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCC--CCCCEEEEEEc------c--------------CCCEEEEEeCCCcEEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE 143 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~------~--------------~~~~l~s~~~dg~v~i 143 (579)
..+++..+.||.+++|+...++....+..- -++..++..|. | +-..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 678999999999999999999876555321 12334444442 1 2235777888999999
Q ss_pred EeCCCCceeeEee--cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058 144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 144 wd~~~~~~~~~~~--~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
|++..|+...++. .|.+.|.++.++.+-..|.+++ +.+..|+....+.++.+.+....+.+++++|||..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999888776 5788999999999989999988 7999999999999999999999999999999999998864
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 283 (579)
+.|++||+.+.+ .+..+.++...++++.|....---.|.+++++. .+.-+.+|-.+.
T Consensus 164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 689999999987 457788999999998887220001266666654 466777885543
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=6.9e-08 Score=108.34 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=148.9
Q ss_pred EEEccC-CCEEEEEeCCCcEEEEECCCCeEEEEecc-ccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fs~d-g~~las~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++++++ |+.+++-+.+++|++||.. |..+..+-+ .......-.+ ....+. ....+++.+. ++.
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~----~~a~f~-~P~GIavd~~---------gn~ 637 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSF----EDATFN-RPQGLAYNAK---------KNL 637 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCch----hccccC-CCcEEEEeCC---------CCE
Confidence 378875 5566666678899999975 554443322 1000000000 000111 1123444332 455
Q ss_pred EEEEEC-CCeEEEEEccCCeEEEEecC-CC---------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008058 89 LVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 89 l~~~~~-~g~i~iwd~~~~~~~~~~~~-~h---------------~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~ 150 (579)
|+++.. ++.|+.+|..++... .+.. +. -...++++|+| ++..+++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 566554 456999998877643 2211 00 12346899999 45556666778999999987764
Q ss_pred eeeEeecC---------------CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee-------------cC-
Q 008058 151 LLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-------------GH- 198 (579)
Q Consensus 151 ~~~~~~~~---------------~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~-------------~h- 198 (579)
.. .+.+. -.....|+++|+|+.|++++ +.|++||+.++....... .+
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 22211 12456799999998666665 799999998765321110 00
Q ss_pred -------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-----------cCceeeEeEEecCCcc
Q 008058 199 -------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGV 260 (579)
Q Consensus 199 -------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 260 (579)
-.....++++++|..+++-. .++.|++||..++... .+.... ..-.....++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd---- 867 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALG---- 867 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEe----
Confidence 11235889999998766665 7999999999876532 111000 001123445665
Q ss_pred cCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 261 DDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 261 ~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
++|+.+++-+.+++|++||+.+++.
T Consensus 868 -~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 -ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCCCEEEEECCCCEEEEEECCCCcc
Confidence 8999888888899999999988764
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=2.6e-08 Score=89.68 Aligned_cols=263 Identities=11% Similarity=0.037 Sum_probs=156.5
Q ss_pred CCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCC------C
Q 008058 94 GGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK------G 161 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~ 161 (579)
..|.+.+|++...+... .+....++.+..+.|.- +|. .++-+..+|.|.++..........+++-.. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678888887655432 12222345677777753 444 466677889999987665444444443221 2
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
..++.|++.+..++++. |.+.+-+...... ++++++|.-+.....|+....-++..|++|+.+..||++..+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence 45788999998888887 8888666555443 4478999999999999865554444444899999999994431
Q ss_pred eeEEe--eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC-ceeecccC--CceEEeeecccCcccccccch
Q 008058 238 SCVLA--MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTK--ATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 238 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 312 (579)
.++. ..|...++++.+.. |.+.+|++|+.|-.|++||.++ ++++...+ +...++.- .|... ..
T Consensus 201 -~i~~n~kvH~~GV~SI~ss~-----~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~----~p~~~--~~ 268 (339)
T KOG0280|consen 201 -FIWHNSKVHTSGVVSIYSSP-----PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH----HPEIF--HR 268 (339)
T ss_pred -eeeecceeeecceEEEecCC-----CCCceEEEeccccceeeeehhcccCccccCccccceEEEEe----cchhh--hH
Confidence 2232 33566666666555 7889999999999999999885 45544322 22222221 12111 01
Q ss_pred hhhhccccceecCCceEEEEEeCCC---CCceeEEEecCCCCcEEEeecCCcceeecccc-ceeccc-ceee
Q 008058 313 AIFAAKLQDIVKPASVHTFVAYGLL---LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-LLKSKR-GRYV 379 (579)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s-~d~~~~-~w~~ 379 (579)
.++++...| ..++..... ....+.....|.+-+..-.|.....++ +|+| .|+.++ +|-.
T Consensus 269 lL~~CMh~G-------~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l-ATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 269 LLAACMHNG-------AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL-ATCSFYDKKIRQLWLH 332 (339)
T ss_pred HHHHHHhcC-------ceEEEecccccchheeeeccccccceeecccccccccee-eeeeccccceeeeeee
Confidence 233333332 111111111 122444555676655555564444566 7776 466645 6743
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.3e-08 Score=99.42 Aligned_cols=197 Identities=19% Similarity=0.345 Sum_probs=134.2
Q ss_pred CcccceEEEEccCCC--EEEE-----EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058 4 SNIRDILTSFSPALD--YFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~--~las-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+.|..+ ++||.+. ++|+ .|.-+.|+||....+.... .+... .....+...+.|...
T Consensus 166 ~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~k--------sFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 166 SGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVANK--------SFFKADKVQMKWNKL 228 (566)
T ss_pred cceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhhc--------cccccceeEEEeccC
Confidence 445444 7777643 5553 3445678888765221111 11111 111223345667654
Q ss_pred ccccccccCCcEEEEEECC-----------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 008058 77 DRKKKRKLGSSLLVLGTGG-----------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCE 143 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~-----------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~dg~v~i 143 (579)
. ..+|++++.| .+++++++....+...+ ...++|.++.|+|+|+-|+.+ -.--.+.+
T Consensus 229 g--------t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 229 G--------TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred C--------ceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 3 4455555432 24888888855555444 356899999999999876554 45678999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
||++ +..+..|. .++-+++-|+|.|++++.++ |.+-+||+.+.+++.++..-. -+-+.|+|||++|+++.
T Consensus 299 fnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 299 FNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred EcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEe
Confidence 9975 77776664 56678999999999999887 799999999988888887544 35579999999999987
Q ss_pred cC-----CCeEEEEEcCCC
Q 008058 219 VG-----ERYIALWRTDGV 232 (579)
Q Consensus 219 ~~-----d~~i~vwd~~~~ 232 (579)
.. |+.++||+....
T Consensus 374 TaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccEEecCCeEEEEecCc
Confidence 53 678999998764
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=2.7e-08 Score=100.64 Aligned_cols=226 Identities=12% Similarity=0.118 Sum_probs=140.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..++.++.+|.+..+|..+|+.......... .++.+ +. .+..+++++.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p------------~v------------~~~~v~v~~~~ 154 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP------------LV------------ANGLVVVRTND 154 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC------------EE------------ECCEEEEECCC
Confidence 466777888899999999999998776542211 00100 00 14567888899
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCE-----EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC----C-----
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G----- 161 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~----- 161 (579)
|.+..||..+|+.+++.... ...+ .+... .+..++.+..+|.+..+|+.+|+.+........ .
T Consensus 155 g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRV-TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CeEEEEEcCCCceeeEEccC-CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 99999999999988776321 1111 11111 234678888899999999999987655331110 0
Q ss_pred -e-eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 162 -I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 -v-~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
+ .+..+. ++..++++. |.++.||.++++.+..... . ....... ++..++.++ .||.+..+|..+++..
T Consensus 232 ~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~--- 302 (377)
T TIGR03300 232 DVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSEL--- 302 (377)
T ss_pred ccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEEC-CCCeEEEEECCCCcEE---
Confidence 0 111121 344444443 8999999999987765542 1 1122222 345666665 6999999999888643
Q ss_pred eEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..... ......... ..+..|++++.+|.++++|..+++.+...+
T Consensus 303 --W~~~~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 303 --WKNDELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred --EccccccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 22211 111111111 135688999999999999999998876554
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=6e-10 Score=121.51 Aligned_cols=181 Identities=21% Similarity=0.353 Sum_probs=138.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+.-+|...+.+||+.||.|++|.+..++.+..++... ..+....|+.. |+.+
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---------------------------Gnk~ 2266 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---------------------------GNKF 2266 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---------------------------CCce
Confidence 3556777899999999999999999998887776322 23333444433 7778
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCC-C--ceeeEeecCCCCee
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLT-G--SLLGKFRASTKGIS 163 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~~-~--~~~~~~~~~~~~v~ 163 (579)
.++..||.+.+|.+.. +.. .-.+.|+....++.|-. ..+++++ .++.+.+||..- + ..+. .+|.+.++
T Consensus 2267 ~i~d~dg~l~l~q~~p-k~~-~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP-KPY-TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred eeeccCCceeecccCC-cce-eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCce
Confidence 9999999999999883 222 23357888999999965 5566654 578899999642 2 2333 78999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
++++-|..+.+++|+ |.|++||++..+.+.+++. ++ ...++++++ ..|.++||++......
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccchh
Confidence 999999999999999 9999999998887776654 33 455777776 5999999999876533
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.8e-08 Score=95.88 Aligned_cols=319 Identities=11% Similarity=0.053 Sum_probs=182.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
-+.|||-|.||+|-..-| |.+|--.+....+.|. | ..+..+.|+|. ..+|
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~---------------------------EkYL 264 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPN---------------------------EKYL 264 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCc---------------------------cceE
Confidence 459999999999998776 7799655444444442 1 12222333333 3444
Q ss_pred EEEE----------CC-CeEEEEEccCCeEEEEecC--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 90 VLGT----------GG-GDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 90 ~~~~----------~~-g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
++-+ .+ ..+.|||+.+|.....+.. +....-.-+.||.|+++++.-..| .|.||+..+..++..-.
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKS 343 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccc
Confidence 4433 22 3499999999988655532 222222346899999999887664 58899976644332222
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---------C
Q 008058 157 ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------G 220 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------~ 220 (579)
-....|....|+|.+++||-=. ..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.--. .
T Consensus 344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 2345788899999999988644 47788888888877765544433334567677888765421 0
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCC-ceeecccCCceEE
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IEELRNTKATKIL 296 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~-~~~~~~~~~~~~~ 296 (579)
--.+.|+.++.... .+-..+-...++. ..|. |.|..+++.+. ..++.+|.+++ .....-.+.....
T Consensus 424 f~n~eIfrireKdI----pve~velke~vi~-FaWE-----P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 424 FSNLEIFRIREKDI----PVEVVELKESVIA-FAWE-----PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK 493 (698)
T ss_pred EeeEEEEEeeccCC----Cceeeecchheee-eeec-----cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence 11345555554432 1223333333333 3444 88887776654 45899998874 2221111111112
Q ss_pred eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccc-----
Q 008058 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSL----- 370 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~----- 370 (579)
.+....++|.|+ .++.+..-+ ..|.+-..+. ....+..+... |. ..+.+-|.|.|+|+ +++|.
T Consensus 494 ~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~-~~a~~k~~~~~eh~-~at~veWDPtGRYv-vT~ss~wrhk 562 (698)
T KOG2314|consen 494 FANTVFWSPKGR----FVVVAALVS----RRGDLEFYDT-DYADLKDTASPEHF-AATEVEWDPTGRYV-VTSSSSWRHK 562 (698)
T ss_pred ccceEEEcCCCc----EEEEEEecc----cccceEEEec-chhhhhhccCcccc-ccccceECCCCCEE-EEeeehhhhc
Confidence 222233677777 777766643 1222222221 11111112222 33 56888899999999 77763
Q ss_pred -eecccceeee
Q 008058 371 -LKSKRGRYVQ 380 (579)
Q Consensus 371 -d~~~~~w~~~ 380 (579)
|+--++|.++
T Consensus 563 ~d~GYri~tfq 573 (698)
T KOG2314|consen 563 VDNGYRIFTFQ 573 (698)
T ss_pred cccceEEEEee
Confidence 3334555553
No 270
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=4.9e-07 Score=85.05 Aligned_cols=217 Identities=18% Similarity=0.199 Sum_probs=135.6
Q ss_pred CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC
Q 008058 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA 105 (579)
Q Consensus 26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~ 105 (579)
+|+|..||..+|+.+....... ... .....+. . .+..+++++.++.+..||..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~------------------~~~~~~~-~------~~~~v~~~~~~~~l~~~d~~t 55 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIG------------------GPVATAV-P------DGGRVYVASGDGNLYALDAKT 55 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCS------------------SEEETEE-E------ETTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCC------------------CccceEE-E------eCCEEEEEcCCCEEEEEECCC
Confidence 6899999999999988775311 000 0000000 0 066788889999999999999
Q ss_pred CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCCC---CeeEEEEccCCCEEEEEC--C
Q 008058 106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTK---GISCMAVSSDGKMLATAA--G 179 (579)
Q Consensus 106 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~---~v~~l~~~p~g~~l~~~~--g 179 (579)
|+.+++.... .++.... ..++..++.++.++.++.+|..+|+.+... ..... .........++..++.+. +
T Consensus 56 G~~~W~~~~~--~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 GKVLWRFDLP--GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp SEEEEEEECS--SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred CCEEEEeecc--cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 9998777532 1111111 224556777778889999999999998884 33211 112222222355555554 8
Q ss_pred eEEEEECCCCeeeEEeecCCCCE-----------EEEEEecCCCEEEEEecCCCe-EEEEEcCCCccccceeEEeeecCc
Q 008058 180 QLKTFNCSDHKKMQKFSGHPGAV-----------RFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~l~s~s~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
.|..+|.++|+.+.....+.... ..+.+ .++ .++.++ .++. +.+ |+.+++.. +... ..
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~-~~g~~~~~-d~~tg~~~-----w~~~-~~ 202 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSS-GDGRVVAV-DLATGEKL-----WSKP-IS 202 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEEC-CTSSEEEE-ETTTTEEE-----EEEC-SS
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEc-CCCeEEEE-ECCCCCEE-----EEec-CC
Confidence 99999999999988886644221 22233 244 555555 5675 555 99988632 2222 22
Q ss_pred eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
..... .. ..+..|+.++.+|.+..||..+++.+.
T Consensus 203 ~~~~~--~~-----~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 203 GIYSL--PS-----VDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -ECEC--EE-----CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CccCC--ce-----eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 21111 11 567888888899999999999998753
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=2.3e-09 Score=117.15 Aligned_cols=181 Identities=15% Similarity=0.205 Sum_probs=145.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+.++|+.||.|++|....++.+......-...|+.+.|+.+|+.+..+..||.+.+|... .+.....+.|....+..
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence 45689999999999999998887655554455899999999999999999999999999975 77777888999888888
Q ss_pred EEccCCCEEEEEC-----CeEEEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 166 AVSSDGKMLATAA-----GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 166 ~~~p~g~~l~~~~-----g~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
.|-. ..+++++ +.+.+||.-- +..+.. +.|.+.++++++.|..+.|++|| .+|.|++||++..+.+
T Consensus 2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~--- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR--- 2371 (2439)
T ss_pred eeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH---
Confidence 8874 6677765 6899999642 222222 78999999999999999999998 7999999999987644
Q ss_pred eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
|+-.. + ....++++|+..|.++||++.....+...+
T Consensus 2372 ------h~~~~-----~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 ------HTFQA-----L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ------HHhhh-----h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 22111 1 234789999999999999998887766553
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=6.6e-09 Score=93.95 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=160.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.++.|...|.||++|..-|+|.+|...... ...+|++|..... |. ..-.....+..+.|+...+
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~----- 98 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG----- 98 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC-----
Confidence 445899999999999999999999765432 2233444432211 11 1122234567788887653
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeE-------------------------------------E----EE-ecCCCCCCEE
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQL-------------------------------------K----WR-LSDCHPGGVS 121 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~-------------------------------------~----~~-~~~~h~~~V~ 121 (579)
...+++.+.+.+|++|.+..... + .+ ....|..-|.
T Consensus 99 --r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 99 --RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred --cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 45688889999999998854310 0 01 1245777789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC-----CCeeEEEEccCC--CEEEEEC-CeEEEEECCCCe
Q 008058 122 AISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST-----KGISCMAVSSDG--KMLATAA-GQLKTFNCSDHK 190 (579)
Q Consensus 122 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~l~~~p~g--~~l~~~~-g~i~vwd~~~~~ 190 (579)
++.|+.|...++++ .|-.|.+|++.--. .+..++.|. .-|++..|+|.. -++.+.+ |.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999998888877 67789999986432 223344443 257888999954 3455556 999999998532
Q ss_pred ee----E------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC--------
Q 008058 191 KM----Q------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------- 246 (579)
Q Consensus 191 ~~----~------------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------- 246 (579)
.. + -|.+-.+.|..+.|+++|+|+++-. =-+|++||.+..+.. +.+..-+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~ 329 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELN 329 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHH
Confidence 21 1 1122345688899999999998753 468999999886532 3333211
Q ss_pred -----ceeeE--eEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 247 -----AVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 247 -----~~~~~--~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
..+.. -+.|+ .|.+.+.+|+..+..-+|-
T Consensus 330 d~YEnDaifdkFeisfS-----gd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEISFS-----GDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEEEec-----CCcccccccccccceeeec
Confidence 11111 12333 6888899999888887775
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.01 E-value=4.2e-07 Score=100.21 Aligned_cols=238 Identities=13% Similarity=0.201 Sum_probs=155.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.| +++.|-++...++.+..+|.|.+. +..+.... ..|..+..+.+++|.|.
T Consensus 76 ~~i--vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-------------------~VG~vd~GI~a~~WSPD--- 131 (928)
T PF04762_consen 76 DKI--VSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-------------------IVGSVDSGILAASWSPD--- 131 (928)
T ss_pred CcE--EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-------------------EEEEEcCcEEEEEECCC---
Confidence 346 777899999989999999999988 44433321 12555667888999886
Q ss_pred cccccCCcEEEEEECCCeEEEEEcc----C---------C--eEE--------EEe------------c--------CC-
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVS----A---------G--QLK--------WRL------------S--------DC- 115 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~----~---------~--~~~--------~~~------------~--------~~- 115 (579)
..++++.+.+|++.+.+-. . | +.+ -++ . .+
T Consensus 132 ------~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 132 ------EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred ------cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 7889999999997775421 0 0 000 000 0 00
Q ss_pred --CCCCEEEEEEccCCCEEEEEeC---C---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEE
Q 008058 116 --HPGGVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLK 182 (579)
Q Consensus 116 --h~~~V~~l~~~~~~~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~ 182 (579)
+.+.-..++|..||.+|++.+. . ..+++|+ ++|....+-..-.+--.+++|.|.|+++|+.. ..|.
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 2234567899999999998764 2 5799999 45765555443334446789999999999886 3566
Q ss_pred EEECCCCeeeEEee----cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058 183 TFNCSDHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 183 vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
+|. ++|-....|. .....|..+.|++|+..|+... .|. |.+|-..+..-- .+....+..... ...+.|++
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWY-LKqei~~~~~~~-~~~~~Wdp- 358 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWY-LKQEIRFSSSES-VNFVKWDP- 358 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEE-EEEEEEccCCCC-CCceEECC-
Confidence 665 5554444443 3456799999999999999875 454 999998776422 001112222222 23366662
Q ss_pred cccCCCcEEEEEEcCCeEEEEEC
Q 008058 259 GVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 259 ~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
.+...|...+.+|.+..++.
T Consensus 359 ---e~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 359 ---EKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred ---CCCCEEEEEecCCcEEEEEE
Confidence 25567888888788877664
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.4e-07 Score=92.14 Aligned_cols=272 Identities=12% Similarity=0.147 Sum_probs=169.5
Q ss_pred EEEccCCCEEEEEeC-----------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 11 TSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 11 ~~fs~dg~~las~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.|||+.+||+|-+. -..+.|||+.+|.....|..... .........|+..+
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~---------------~~~~WP~frWS~Dd-- 317 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS---------------PYLKWPIFRWSHDD-- 317 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC---------------CccccceEEeccCC--
Confidence 499999999998763 14799999999999888864321 12234456666542
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceeeE
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~ 154 (579)
. .++.-....|.||+..+-.++- ...-.-.+|....|+|.++.|+.=.. -..+.+..+.+++.+++
T Consensus 318 -------K-y~Arm~~~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 318 -------K-YFARMTGNSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred -------c-eeEEeccceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 3 3444445789999987744431 11123467999999999888775431 23567777777877776
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d- 221 (579)
-.-+.-.=..+.|-.+|.+|+.-- ..+.|+.++....-...-.-...|...+|-|.|..+++-+..+
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 554444445677888888887632 2566777665543222223557788999999998877765333
Q ss_pred -CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCCceeecccCCceEEe
Q 008058 222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
.++.+|.+.+.... ...+..+ .....+.+.|+ |.|++++++.. .|.+.++|...........+... .
T Consensus 469 k~tvsfY~~e~~~~~-~~lVk~~--dk~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~ 539 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKK-PSLVKEL--DKKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-A 539 (698)
T ss_pred ccceeEEEeecCCCc-hhhhhhh--cccccceEEEc-----CCCcEEEEEEecccccceEEEecchhhhhhccCcccc-c
Confidence 47889988742211 1122333 23455667787 99999988854 68999999875322222111111 1
Q ss_pred eecccCcccccccchhhhhccccc
Q 008058 298 SSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
.+...+.|.|+ ++++++...
T Consensus 540 at~veWDPtGR----YvvT~ss~w 559 (698)
T KOG2314|consen 540 ATEVEWDPTGR----YVVTSSSSW 559 (698)
T ss_pred cccceECCCCC----EEEEeeehh
Confidence 11222456666 666665543
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=2.1e-07 Score=82.80 Aligned_cols=200 Identities=10% Similarity=-0.037 Sum_probs=133.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
-..|+.|+..|...+|.+.+++....+...|...|+-+.=.-+. ..+..++.|.++++.++.-+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45689999999999999998876555544555544332211122 23677889999999988654433222222224789
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCC-ee-eE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 165 MAVSSDGKMLATAA--GQLKTFNCSDH-KK-MQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g~i~vwd~~~~-~~-~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
+++++|++++++.+ ..|..|.+... +. +. ........=.+..|+.....++++. .||++.|||++.....-...
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence 99999999999887 78999988753 22 22 1222333445678988888888887 89999999998765432223
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
..+-+++...++.+.|+... +. ..|+..-.=+.+++-|++++...+.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g--~l-DLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYG--LL-DLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred cccCCCCCCceEEEEecCCC--cc-eEEEEecCcceEEEEEcccCceeeE
Confidence 33455778888888888321 22 2344444457899999988876543
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=3.6e-08 Score=90.64 Aligned_cols=182 Identities=10% Similarity=0.163 Sum_probs=125.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECC----CCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
++|++ +++|.+....|..|-..|++.-+.+. .......+..|...+..+.|+.+.+---....-++++|.....
T Consensus 68 P~~~~--~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 68 PSPCS--AMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred CCCce--EeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 56774 44999999999999999999887654 3334555667777777777765522112223345667765432
Q ss_pred ccccc------------cCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 008058 79 KKKRK------------LGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI 144 (579)
Q Consensus 79 ~~~~~------------~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iw 144 (579)
..+-. .+-.+.+.|...|.|..-.+.... .+.++ .+|.+.+++++|.|..+.+++|..|..+.+|
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 21110 011234555566666665554332 34343 7899999999999999999999999999999
Q ss_pred eCCCCc-eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008058 145 DPLTGS-LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (579)
Q Consensus 145 d~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~ 187 (579)
|+.-++ ......+|.+.|..+...+--+.+.+++ |.|.+||++
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 986543 3445778888888888888778888877 899999983
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=3.6e-09 Score=102.59 Aligned_cols=223 Identities=14% Similarity=0.165 Sum_probs=149.5
Q ss_pred cCCCEEEEEeCCCcEEEEECC-------CCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 15 PALDYFAICSGDARIKIWDTL-------KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+.+-+++++.|.+|++|.++ +..|..+++.|..++.++.|..+
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~----------------------------- 795 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD----------------------------- 795 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----------------------------
Confidence 355678999999999999875 33477778888877776666544
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCC-CCCCEEEEEEcc--CCCEEEE-EeCCCcEEEEeCCCCceeeEeec-----C
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFAT--HGSCIYS-AGADGMVCEIDPLTGSLLGKFRA-----S 158 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~--~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~-----~ 158 (579)
.-.+++.||-|.+||+--++...+.... ..+.+..+.--| +...++. |+...+|+++|.+.+.....++. .
T Consensus 796 lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 796 LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 1256778999999999888766443211 112222232223 3444444 47889999999998876666543 3
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE-EEcCCCccc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDGVKKQ 235 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v-wd~~~~~~~ 235 (579)
...+.+++..|.|+.++.+- |.|.+.|.++|+.+..+.........++- |..+.++.+. -|.++.+ |..-.+..
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa-ldHslaVnWhaldgim- 952 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA-LDHSLAVNWHALDGIM- 952 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc-ccceeEeeehhcCCee-
Confidence 45689999999999999886 99999999999988877665555544443 5566777776 5899988 87665531
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
.+....+........ .-|.-+++......+.+|.
T Consensus 953 ----h~q~kpppepahflq-------svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 953 ----HLQDKPPPEPAHFLQ-------SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ----eeccCCCCcchhhhh-------ccCceeEEeccCcEEEEEe
Confidence 122222221111111 2355677777777788884
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=3.8e-09 Score=102.41 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=131.4
Q ss_pred cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-------CceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEE
Q 008058 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185 (579)
Q Consensus 113 ~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd 185 (579)
+.||...|..++--.+.+.+++++.|++|++|.++. ..+..+++.|+.+|..+.|-.+-+++++++|.|++||
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD 810 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence 368999998887777778899999999999999863 2366778899999999999999999999999999999
Q ss_pred CCCCeeeEEee--cCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeEEee---ecCceeeEeEEecCC
Q 008058 186 CSDHKKMQKFS--GHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNG 258 (579)
Q Consensus 186 ~~~~~~~~~~~--~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 258 (579)
.--++++.++. ...+.+..+..-++ ...++++++...+|+++|.+..+-. +.+.. ..+....++....
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---~E~kVcna~~Pna~~R~iaVa-- 885 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---CELKVCNAPGPNALTRAIAVA-- 885 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---eeEEeccCCCCchheeEEEec--
Confidence 88777765442 12233444444443 4455555457889999999987633 32322 3455667777776
Q ss_pred cccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 259 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
+.|++++++-.+|+|-+.|.++|+.+..-.|
T Consensus 886 ---~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 886 ---DKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred ---cCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 8999999999999999999999988765443
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.6e-07 Score=94.25 Aligned_cols=239 Identities=12% Similarity=0.145 Sum_probs=157.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-|++|+....|+|+|+.||.++|-.+.+...-...++ -.....+..+.. ..|| ...+..+.|...+++
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH-~~sV~vvTWNe~~QK--------- 85 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGH-NASVMVVTWNENNQK--------- 85 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccC-cceEEEEEecccccc---------
Confidence 4669999999999999999999998876543322222 112223333333 3355 345667888876444
Q ss_pred EEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~ 166 (579)
|-++..+|-|.+|-+-.|....... ....+-|.+++|+.||..+.....||.|.+=.+...+...+ ++ ......+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhecccee
Confidence 7888889999999998887543332 33456799999999999999999999998877654332221 22 22445789
Q ss_pred EccCCCEEEEEC--CeEEEEECCCC-------eeeEE----eecCCCCEEEEEEe--------cCCCEEEEEecCCCeEE
Q 008058 167 VSSDGKMLATAA--GQLKTFNCSDH-------KKMQK----FSGHPGAVRFMTFS--------DNGKYVLSSAVGERYIA 225 (579)
Q Consensus 167 ~~p~g~~l~~~~--g~i~vwd~~~~-------~~~~~----~~~h~~~v~~l~~~--------~~~~~l~s~s~~d~~i~ 225 (579)
|++|.+.++.+- |.+.+||.+.. .+... +......+..+.|. |+...|+.+- ..|.+.
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-ANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cCceeh
Confidence 999998877765 89999997642 11111 12222335556653 5777888875 688888
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 273 (579)
+..-.+.... .+. ..+..+....|+ ++|..|++++.+
T Consensus 243 iMR~eND~~P---vv~---dtgm~~vgakWn-----h~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEP---VVV---DTGMKIVGAKWN-----HNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCC---eEE---ecccEeecceec-----CCCcEEEEccCc
Confidence 7655444322 122 222344556666 899999998764
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=6.3e-06 Score=77.83 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=131.6
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+|.+ +|.++++--..+.|..|+..++.... +.... .. .+..... ...+
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~------------------G~~~~~~---------~g~l 54 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PN------------------GMAFDRP---------DGRL 54 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EE------------------EEEEECT---------TSEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--Cc------------------eEEEEcc---------CCEE
Confidence 37888 66666666568999999998876543 22111 11 1111111 3446
Q ss_pred EEEECCCeEEEEEccCCeEEEEec---CC-CCCCEEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeeEeec
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLS---DC-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~---~~-h~~~V~~l~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~ 157 (579)
+++...+ +.++|+.+++...... .. .....+++++.|+|+..++.... |.|+.++.. ++......
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 6666544 4555999886542222 11 34568999999999966665533 568888876 55443333
Q ss_pred CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-e------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-K------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~-~------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
.-...+.|+|+|+++.|+.+. +.|..|++... . ....+....+..-.+++..+|+..++.. ..+.|.++
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence 345678999999999887654 78999998632 1 1222232233478899999998776655 68899999
Q ss_pred EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 271 (579)
+.+ ++.. ..+..+....+.++|. .++.+.|+..+
T Consensus 211 ~p~-G~~~-----~~i~~p~~~~t~~~fg----g~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPD-GKLL-----REIELPVPRPTNCAFG----GPDGKTLYVTT 244 (246)
T ss_dssp ETT-SCEE-----EEEE-SSSSEEEEEEE----STTSSEEEEEE
T ss_pred CCC-ccEE-----EEEcCCCCCEEEEEEE----CCCCCEEEEEe
Confidence 987 5533 2333333355666663 15666665544
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=3.2e-07 Score=87.96 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=126.2
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 13 fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
|++ +|++++..|. |...|.+.-.+..++.= +...+. ...... .+.-++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~Vr---------------------Y~r~~~------~~e~~vi 376 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGVR---------------------YRRIQV------DPEGDVI 376 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCceE---------------------EEEEcc------CCcceEE
Confidence 444 7889998884 67777776555544321 111111 111000 1446899
Q ss_pred EECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058 92 GTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 92 ~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
|+.|| .+-+||..+++.. ++ .+.-+.|.++..+|+|++++.+.....+.+.|+.+|.....=+...+-|+..+|+|+
T Consensus 377 gt~dgD~l~iyd~~~~e~k-r~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVK-RI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eccCCceEEEEecCCceEE-Ee-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence 99999 5999999999865 33 346688999999999999999988889999999999876555556678999999999
Q ss_pred CCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058 171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 171 g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
++++|-+- ..|++||+.+++....-+ ..+.=.+-+|.|++++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 99999885 589999999887654332 333345678999999887654
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=2.2e-06 Score=82.41 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=125.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++++.+. |...+.+...+-.+ + -+|.+.|.-..+..+++-++.|..|| .+-++|..+++.. .+...-+.|.+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~a 406 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEA 406 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEE
Confidence 666666654 56666666655544 2 36888899999988888999999999 8999998877654 45556678999
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccce
Q 008058 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSAS 238 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~ 238 (579)
+..+|+|+.++.+. ..|.++|+.+++....=+...+-|+.+.|||++++++.+- -+| .|+++|+.+++..
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Kiy--- 482 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKIY--- 482 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeEE---
Confidence 99999999999998 6888999999976555455678899999999999998874 455 6999999988632
Q ss_pred eEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
....+...=-.-+|. |++++|.--+.
T Consensus 483 ---~vTT~ta~DfsPaFD-----~d~ryLYfLs~ 508 (668)
T COG4946 483 ---DVTTPTAYDFSPAFD-----PDGRYLYFLSA 508 (668)
T ss_pred ---EecCCcccccCcccC-----CCCcEEEEEec
Confidence 222221111123344 88988766543
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=5.6e-07 Score=91.13 Aligned_cols=189 Identities=13% Similarity=0.100 Sum_probs=116.7
Q ss_pred eEEEEccCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 ~~~~fs~dg~~-las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+...|||||+. ++..+.+ ..|.++|+.+|+...... ..+.. ....|.|.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~------------------~~~~~SPD-------- 243 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGML------------------VVSDVSKD-------- 243 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcE------------------EeeEECCC--------
Confidence 67799999985 6655543 468888998887654332 11111 12334432
Q ss_pred CCcEEE-EEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecC
Q 008058 85 GSSLLV-LGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 85 ~~~~l~-~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~ 158 (579)
+..++ +.+.+ ..|.++|+.+++.. .+. .+........|+|||+.|+..+. .+ .|+++|+.+++..+....
T Consensus 244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~- 319 (419)
T PRK04043 244 -GSKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH- 319 (419)
T ss_pred -CCEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence 44444 44434 45888898888754 332 23333445689999998776653 23 688889887766443321
Q ss_pred CCCeeEEEEccCCCEEEEEC--C---------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEE
Q 008058 159 TKGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIA 225 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g---------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~ 225 (579)
... ...|+|||+.++... . .|++.|+.++.. ..+... .......|+|||+.++..+...+ .+.
T Consensus 320 g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 320 GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 111 248999999888654 1 578889887754 344433 23345889999998877663333 355
Q ss_pred EEEcCCC
Q 008058 226 LWRTDGV 232 (579)
Q Consensus 226 vwd~~~~ 232 (579)
+.++...
T Consensus 396 ~~~l~g~ 402 (419)
T PRK04043 396 IIRLNYN 402 (419)
T ss_pred EEecCCC
Confidence 6666554
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=2.5e-06 Score=80.59 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=126.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeeEeec-----CC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~ 159 (579)
+.++++-...+.|+.|+..++........ ...++.+. +++ .++.+..++ +.++|+.+++....+.. ..
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP----GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEESS----SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEecC----CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 66677777789999999999877532211 27788888 564 555565554 56669988865444332 23
Q ss_pred CCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~----------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
...+.++++|+|++.++.. |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.+..+.|..+++
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence 4788999999999777754 236667766 44433333 34567899999999988766667888999998
Q ss_pred CCCcc-c-cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 230 DGVKK-Q-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 230 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..... . .......+.........+++. .+|+..++.-..+.|.+++.+ |+.+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 65432 1 111222333333346777787 889888887889999999987 7666543
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=1.2e-06 Score=98.70 Aligned_cols=212 Identities=11% Similarity=0.128 Sum_probs=128.9
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccccccccccccc-cccccccCccceEEeeecccccccccCCc
Q 008058 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++|+++++.|+.+.. .+.|+++|..++.. ..+.+... ....+... ......-..-..+++.+.+ +.
T Consensus 628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~ 696 (1057)
T PLN02919 628 GLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVN--------EK 696 (1057)
T ss_pred EEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence 3488998887666554 56899999877653 33322110 00000000 0000000011245555432 55
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEec-------CC------CCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCceee
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLS-------DC------HPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~-------~~------h~~~V~~l~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~ 153 (579)
++++.+.++.|++||..++....-.- .+ .-...++++|+|+|+.|+. -+.++.|++||+.++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 66666778889999998776531100 01 1124568999999986554 4567899999998765321
Q ss_pred Eeec-------------C--------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec-------------
Q 008058 154 KFRA-------------S--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------- 197 (579)
Q Consensus 154 ~~~~-------------~--------~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~------------- 197 (579)
...+ . -.....++++++|+++++-. +.|++||..++.... +.+
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccc
Confidence 1100 0 11346899999998777665 799999998876543 222
Q ss_pred -CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 198 -HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 198 -h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
+-.....++++++|+.+++-+ .++.|++||+.+++.
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 112467899999998777665 789999999988753
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=3.4e-08 Score=92.80 Aligned_cols=159 Identities=10% Similarity=0.130 Sum_probs=108.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+.++|+|+++|.+..+....+++.........+- .........+.+.+... ...+.
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~---------------~~~~v~~~~~ai~~~~~---------~~sv~ 123 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL---------------DVSCVPKRPTAISFIRE---------DTSVL 123 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceee---------------eEeecccCcceeeeeec---------cceEE
Confidence 3688999999999988888788776443211110 00011112223333333 33455
Q ss_pred EEECCCe---EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008058 91 LGTGGGD---VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA 166 (579)
Q Consensus 91 ~~~~~g~---i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~ 166 (579)
++..-|+ +.+|+...+.+. ..-||-+.+++++|+||+++|+++..|..|++-....-..+.. +-+|...|..++
T Consensus 124 v~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred EEeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 5555555 445554445443 3358999999999999999999999999999987765555555 456999999999
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEee
Q 008058 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (579)
Q Consensus 167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~ 196 (579)
.-++.. |++++ +++++||+.+|+.+.++.
T Consensus 202 l~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTDNYL-LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eccCce-eeecCCCCcEEEEecccCCcccccc
Confidence 987654 66665 899999999999886653
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=3.3e-06 Score=85.55 Aligned_cols=181 Identities=11% Similarity=-0.005 Sum_probs=113.8
Q ss_pred Cc-EEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eC--CCcEEEEeCCCCceeeEeecC
Q 008058 86 SS-LLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GA--DGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 86 ~~-~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~--dg~v~iwd~~~~~~~~~~~~~ 158 (579)
++ .++..+.. ..|+++|+.+++...-. ...+......|+|||+.++.. +. +..|+++|+.+++.. .+..+
T Consensus 199 G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~ 275 (419)
T PRK04043 199 EQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY 275 (419)
T ss_pred CCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccC
Confidence 44 35544443 45999999988765332 244556778899999876543 33 356888898777643 34333
Q ss_pred CCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--------CeEE
Q 008058 159 TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------RYIA 225 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--------~~i~ 225 (579)
........|+|||+.|+..+ ..|+++|+.+++..+.... ... ...|+|||++++..+..+ ..|.
T Consensus 276 ~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 276 PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 33334568999999877765 2799999988765332221 111 248999999988877433 3678
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCc
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI 284 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 284 (579)
+.|+.++... .+.... ......|+ |||+.|+..+.++ .+.+.+++..
T Consensus 353 v~d~~~g~~~------~LT~~~-~~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 353 LISTNSDYIR------RLTANG-VNQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEECCCCCeE------ECCCCC-CcCCeEEC-----CCCCEEEEEEccCCcEEEEEEecCCC
Confidence 8888777532 121111 11234566 9999888776533 4566666543
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=6.6e-07 Score=90.86 Aligned_cols=228 Identities=15% Similarity=0.119 Sum_probs=138.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.+|.+..+|.++|+.....+.... .++.+ +. .+..+++++.+|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP------------~v------------~~~~v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP------------VV------------SDGLVLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC------------EE------------ECCEEEEECCCC
Confidence 45677788899999999999998877653211 01111 00 045678888999
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-------CeeEEEE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCMAV 167 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l~~ 167 (579)
.+..+|..+|+.+++.............-+| .+..++.++.+|.+..+|..+|+.+........ ....+..
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence 9999999999998877432110000000011 234577778899999999999987665432110 0111112
Q ss_pred cc---CCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058 168 SS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 168 ~p---~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
+| ++..++++. |.+..+|..+|+.+.+..- .....+.. .+..++.++ .++.+..+|..+++.. ...
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~~~-----W~~ 320 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVD-QNDRVYALDTRGGVEL-----WSQ 320 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEc-CCCeEEEEECCCCcEE-----Ecc
Confidence 22 444444444 8999999999987655431 11122222 344566665 6899999999888643 211
Q ss_pred ec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 244 EH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.. .......... .+.+|+.++.||.++.+|..+|+.+...
T Consensus 321 ~~~~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 321 SDLLHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cccCCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 11 0111111111 2467788999999999999999877654
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=1.6e-06 Score=88.01 Aligned_cols=237 Identities=13% Similarity=0.105 Sum_probs=140.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+..+++++.+|.+.-+|..+|+.+...+..... ..++.. ...... ..... .+..+++++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~ 129 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK 129 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence 4567778888899999999999988876532210 000000 000000 00000 15668889999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEcc
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS 169 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p 169 (579)
|.+..+|..+|+.+++.... +.+.+ ... .+..++.+..++.++.+|..+|+.+..+......+ .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~- 204 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA- 204 (394)
T ss_pred CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence 99999999999998876432 22222 112 24467778889999999999999887765421111 111121
Q ss_pred CCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-------CEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 170 ~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
++..++..+ |.+..+|..+|+.+.+...... ....+.-+| .+..++.++ .++.+..+|..+++..
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~---- 279 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV---- 279 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE----
Confidence 344444333 8899999999887655431110 000111112 234566665 6899999999988643
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
+...... ... .. ..+..|+.++.+|.++.+|..+++.+...
T Consensus 280 -W~~~~~~-~~~-~~-------~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 280 -WKREYGS-VND-FA-------VDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred -EeecCCC-ccC-cE-------EECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 2221111 001 11 24567888889999999999999876543
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=1.8e-06 Score=78.27 Aligned_cols=207 Identities=15% Similarity=0.189 Sum_probs=110.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+||||+..||.+...|+|+++|+.. ..+..+...... .+..+..+..+.+.......+ -...|++
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~-----------~~d~~~Aiagl~Fl~~~~s~~---ws~ELlv 114 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSF-----------PGDLSDAIAGLIFLEYKKSAQ---WSYELLV 114 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccccc-----------CCccccceeeeEeeccccccc---cceeEEE
Confidence 9999999999999999999999875 444444321110 122223333344433221100 0335777
Q ss_pred EECCCeEEEEEccCC-----eE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCceeeEeecCCCCee
Q 008058 92 GTGGGDVLALAVSAG-----QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-VCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~-----~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
-...|.++-|-+..+ +. ...+...+..+|.++.|+|..+.|+.|+.... -..+. ...--+..++.-.+...
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-ASSCGLTAWRILSDSPY 193 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-ccccCceEEEEcCCCCc
Confidence 778888777776432 11 12333345678999999999888877764321 00000 00000111111111111
Q ss_pred EEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 164 CMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
...+...+.-+.....+-.+|.+-+.+...........|..|..+|||+.|++.. -+|.|.+|++.+-..+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcchhh
Confidence 1111111111111111223333333222222223456799999999999999987 6999999999886544
No 291
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=1.4e-07 Score=86.70 Aligned_cols=247 Identities=13% Similarity=0.086 Sum_probs=152.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeE----EEEecCCCC------------CCEEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~ 147 (579)
|.+|++|..+|.|.+|.-..... .....+.|. ..|..+.|.++++ .++..+.|.+|++|-+.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~ 116 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR 116 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence 89999999999999987543221 222223333 3588899988765 46777799999999875
Q ss_pred CCcee-----------------------------------eEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008058 148 TGSLL-----------------------------------GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (579)
Q Consensus 148 ~~~~~-----------------------------------~~~-~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~ 190 (579)
..... +.+ .+|.--|++|.++.|+..+++++ =.|-+|++.-..
T Consensus 117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID 196 (433)
T ss_pred ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence 32110 111 14666889999999999999999 699999987432
Q ss_pred e---eEEeecCC-----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc-ceeEEeeecC----------ceee
Q 008058 191 K---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAMEHP----------AVFM 250 (579)
Q Consensus 191 ~---~~~~~~h~-----~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~~~~----------~~~~ 250 (579)
. +..++.+. .-|++..|+|... .++.++ ..|+|++.|++....-. ....+..... -..+
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 2 33333332 3478889999643 455555 58999999998542110 0011111111 1223
Q ss_pred EeEEecCCcccCCCcEEEEEEcCCeEEEEECC-CceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceE
Q 008058 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (579)
+-+.|+ ++|+++++-+. -+|++||+. ..+++...+-+.. -+ ..+.+--...
T Consensus 276 SDvKFs-----~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~-----------lr---~kLc~lYEnD-------- 327 (433)
T KOG1354|consen 276 SDVKFS-----HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY-----------LR---SKLCSLYEND-------- 327 (433)
T ss_pred hceEEc-----cCCcEEEEecc-ceeEEEeccccCCcceEEeehHh-----------HH---HHHHHHhhcc--------
Confidence 445555 89999987654 589999973 2233322211100 00 0111111110
Q ss_pred EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+ .....++||-++.++ +|||..+..++.++.
T Consensus 328 -------~I-----------fdKFec~~sg~~~~v-~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 328 -------AI-----------FDKFECSWSGNDSYV-MTGSYNNVFRVFNLA 359 (433)
T ss_pred -------ch-----------hheeEEEEcCCcceE-ecccccceEEEecCC
Confidence 01 134567899999999 999999999999853
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=6e-08 Score=85.83 Aligned_cols=188 Identities=12% Similarity=0.183 Sum_probs=112.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCceeeEeecCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
++.++++..||.+.+++.+.-... .++...|.+ -.+.++...++.+.++. .-+..+.|+++..+.+..-....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 567899999999999988752111 111111222 12222333444444432 23345666665433222211122
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECCCCee-eEEeecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEcCCCcc
Q 008058 160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
..|.+++-+|..+.++.++ |.+-+||.++... ...+..|+.+++.+-|+|. +..|++++ +||.+..||..+.-.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~~~l 258 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDASTTFL 258 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCCceE
Confidence 3599999999766555544 8999999998743 4456789999999999984 56788887 899999999874210
Q ss_pred c-----cce------------eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 235 Q-----SAS------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 235 ~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
. +.. .-...--+....++..|. --|..|++|+.-+.|++++
T Consensus 259 ~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD-----V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 259 SISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD-----VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EecCccccccccccCCcccceEeeeccccccceeeeeee-----ccCceEEeccccceEEEec
Confidence 0 000 000000122233334443 5678888888888888874
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=6e-07 Score=91.10 Aligned_cols=242 Identities=16% Similarity=0.172 Sum_probs=157.4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc---CCc
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL---GSS 87 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~ 87 (579)
+.|+|.| .||.|+. ..|.|-|..+-+.++.+.-|...++ .+.|.|..-...-.. ..-
T Consensus 21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~------------------~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVT------------------SVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCcccee------------------EEEeccCCCchhccCccccce
Confidence 3889888 7888874 4788999999998888876665554 445544321100000 134
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+|+++.-.|.|.+||...+..+..+ ..|.+++.+++|-+ +. ..|+.-....++.+|+..+|+.+.+.........
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 5777777899999999998887666 56889999999976 33 4567777788999999999999988877667888
Q ss_pred EEEEcc-CCCE-EEEEC-CeEEEEECCC-------CeeeEEeecCCC----------------C---------EEEEEEe
Q 008058 164 CMAVSS-DGKM-LATAA-GQLKTFNCSD-------HKKMQKFSGHPG----------------A---------VRFMTFS 208 (579)
Q Consensus 164 ~l~~~p-~g~~-l~~~~-g~i~vwd~~~-------~~~~~~~~~h~~----------------~---------v~~l~~~ 208 (579)
|+.+.| |.+. .+.|+ |.+.+-+.-. ++....-..|.. . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 899998 4444 44444 6665554321 222222222222 0 1234677
Q ss_pred cCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 209 ~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
|.-+.++... -.+.+.++|++-.... .+..++.. ..++.... + |....|++...||.+.+|--+.
T Consensus 240 p~~rn~lfi~-~prellv~dle~~~~l---~vvpier~~akfv~vlP-~-----~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 240 PHWRNILFIT-FPRELLVFDLEYECCL---AVVPIERGGAKFVDVLP-D-----PRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhhceEEEE-eccceEEEcchhhcee---EEEEeccCCcceeEecc-C-----CCcceEEEEecCCeEEEEEeec
Confidence 7655444444 4788999999876643 22223222 22333321 1 5567899999999999996443
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=1.5e-05 Score=74.65 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=135.8
Q ss_pred ceEEEEcc-CCCEEEEEeCCCc-EEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 8 DILTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 8 ~~~~~fs~-dg~~las~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
.-.++.+| ++..++.+-.-|+ ..+||..+++....+....+... .|| -.|.+.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---------yGH-------g~fs~d--------- 61 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---------YGH-------GVFSPD--------- 61 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---------ecC-------EEEcCC---------
Confidence 34458899 5567777777665 67899999998887754332111 022 112111
Q ss_pred CcEEEEEECC-----CeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------------------CCCcE
Q 008058 86 SSLLVLGTGG-----GDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGMV 141 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------------------~dg~v 141 (579)
+++|++.-++ |.|-|||.. +-+.+.++ ..|.-.-..+.+.|||+.|+.+. .+..+
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 6777776544 569999999 55566565 34666678899999998887762 22345
Q ss_pred EEEeCCCCceeeEeec----CCCCeeEEEEccCCCEEEEEC--C-------eEEEEECCCCeeeEEe-------ecCCCC
Q 008058 142 CEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKF-------SGHPGA 201 (579)
Q Consensus 142 ~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~g~~l~~~~--g-------~i~vwd~~~~~~~~~~-------~~h~~~ 201 (579)
...|..+|+.+....- |...|..+++.++|..++..- | .|.+++-.. .+..+ ..-.+.
T Consensus 141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCc
Confidence 6667788888777432 666899999999998777654 2 355554433 22222 233477
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
+-+|++++++..+++++-.-+.+.+||..++...
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 9999999999988887767889999999998744
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=4.9e-06 Score=78.19 Aligned_cols=188 Identities=21% Similarity=0.292 Sum_probs=123.7
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
..+++.++++++.++.|..||..+|+.+..+..... .... + .. .+..++++
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~---~-----------------~~--------~~~~v~v~ 82 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA---P-----------------VV--------DGGRVYVG 82 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG---E-----------------EE--------ETTEEEEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce---e-----------------ee--------cccccccc
Confidence 344667788888999999999999999887764111 1100 0 00 16678888
Q ss_pred ECCCeEEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008058 93 TGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-------- 161 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-------- 161 (579)
+.++.+..+|..+|+..++...... ..........++..++.+..++.|..+|+.+|+.+.........
T Consensus 83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 8999999999999999888422111 11222333334788888888999999999999998887664422
Q ss_pred --eeEEEEccCCCEEEEEC-Ce-EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 162 --ISCMAVSSDGKMLATAA-GQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 162 --v~~l~~~p~g~~l~~~~-g~-i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
+.+-....++..+++.. +. +.+ |+.+++.+.... ...+..+ ...++..++.++ .++.+..||+.+++.
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred cccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 11222223454555544 54 555 999998664333 2223331 346677888877 699999999999874
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=1.5e-07 Score=88.53 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=108.4
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCCCCeeEEEEccCCCEEEEEC--C---eEEEEECCCC
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH 189 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~l~~~p~g~~l~~~~--g---~i~vwd~~~~ 189 (579)
.+..+.+++.+++++.+..+....++++..... ...+.. ...-+++.+..+......+. | .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445566788889999988888877777654432 222222 22335555655555555544 4 5566665554
Q ss_pred eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEE
Q 008058 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 190 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (579)
.+ ..+-||-+.++.++|+||+++++++- .|..|++-.......+ ..+-++|.. .++..+. -++..|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~e-FVS~isl------~~~~~LlS 210 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKE-FVSTISL------TDNYLLLS 210 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHh-heeeeee------ccCceeee
Confidence 43 34458999999999999999999875 7999998877665433 223444544 4444444 25677999
Q ss_pred EEcCCeEEEEECCCceeecccC
Q 008058 270 ISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
++.|+++++||+.+|+.+....
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999999885543
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=3.4e-06 Score=75.25 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=127.1
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEe-ccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
.+||.|+.-|...+|...+.+....+ ..+...+. .... -|. ...-+..++.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---~~~r----------~cd-------------~~~~~~i~sndh 138 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---LVKR----------YCD-------------LKFPLNIASNDH 138 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchh---hhhh----------hcc-------------cccceeeccCCc
Confidence 48999999999999998866543222 11111111 0000 000 023378889999
Q ss_pred eEEEEEccCCeEEEEecCCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-c-eeeEee-cCCCCeeEEEEccCC
Q 008058 97 DVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEIDPLTG-S-LLGKFR-ASTKGISCMAVSSDG 171 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~-~~~~~~-~~~~~v~~l~~~p~g 171 (579)
++++.++..+...... |.. .+.++++++|++++++.+....|..|.+... + .+.+.. ...+.=.+..|+...
T Consensus 139 t~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 139 TGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred ceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 9999988766543333 333 3889999999999999999999999987643 2 222222 223344678999999
Q ss_pred CEEEEEC--CeEEEEECCCCeee-----EEeecCCCCEEEEEEecCCC--EEEEEecCCCeEEEEEcCCCccc
Q 008058 172 KMLATAA--GQLKTFNCSDHKKM-----QKFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 172 ~~l~~~~--g~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~--~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
..+|++. |++.|||++..... .+-+.|.+.+..+.|++.|. .|+.+ ..-+.+.+.|+++....
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVNH 287 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCcee
Confidence 9999998 99999999975332 22246899999999998654 34433 35678999999998643
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.4e-08 Score=103.81 Aligned_cols=192 Identities=17% Similarity=0.310 Sum_probs=136.0
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCE 143 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~i 143 (579)
..++|+++.-. .+.|++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.||..+++.+.-. ...+
T Consensus 1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence 56777777654 678999999999999999999887665 68999999999999999877665433 4778
Q ss_pred EeCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ec---CCCCEEEEEEecCCCEEEE
Q 008058 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~---h~~~v~~l~~~~~~~~l~s 216 (579)
|++.+ +...++|.+ -.++.|+.....-+.|. ....+||++++..+.++ .+ ....-+...|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99863 455555553 35788887644444444 68999999999877663 22 122236678999987664
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
+|| .+||++..+.+ ..+..-.... . +.|+|.|..++.-++ |||+++.+.+...+..
T Consensus 1247 ---ndG--vLWDvR~~~aI-----h~FD~ft~~~-~-----G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFTDYG-G-----GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ---eCc--eeeeeccHHHH-----hhhhhheecc-c-----ccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence 577 58999987533 2222222111 1 223499999887664 9999999988766543
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.69 E-value=7.6e-06 Score=90.46 Aligned_cols=187 Identities=12% Similarity=0.198 Sum_probs=124.0
Q ss_pred CcEEEEEECCCeEEEE----EccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---------
Q 008058 86 SSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--------- 152 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iw----d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------- 152 (579)
...++++..+|.|.++ +..+... .....-..+|.+++||||+..++..+.++++.+.+- +...+
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD 163 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence 5669999999999999 5555443 222234578999999999999999998998877642 11111
Q ss_pred ---------------eEeec------------------------CCCCeeEEEEccCCCEEEEEC--------CeEEEEE
Q 008058 153 ---------------GKFRA------------------------STKGISCMAVSSDGKMLATAA--------GQLKTFN 185 (579)
Q Consensus 153 ---------------~~~~~------------------------~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd 185 (579)
..|+| ....-..|+|-.||.++|+.+ ..++||+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 11111 112345788999999999875 3799998
Q ss_pred CCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC
Q 008058 186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 186 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
- .|....+-..-.+--..++|.|.|+.++++... ...|.+|.-+..+.. ............+..+.|+ +|
T Consensus 244 R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~~~~~~~v~~l~Wn-----~d 315 (928)
T PF04762_consen 244 R-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--EFTLRFDPEEEKVIELAWN-----SD 315 (928)
T ss_pred C-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--eEecCCCCCCceeeEEEEC-----CC
Confidence 5 466554444334444578999999998887632 234666664443322 1222222445566778887 89
Q ss_pred CcEEEEEEcCCeEEEEECCCc
Q 008058 264 GLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 264 ~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+..||....|. |.+|-..+.
T Consensus 316 s~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCEEEEEecCC-ceEEEeeCC
Confidence 99999977655 999976554
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=7.8e-06 Score=84.44 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=129.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+|++.+..++.|+.+|.|.+.+- +-+..+.|+.+...+....+..+ +..+|++
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~--------------------------~~~~L~s 82 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN--------------------------KQNFLFS 82 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc--------------------------CceEEEE
Confidence 78899999999999998888773 24444667655544222222221 0345555
Q ss_pred EECCC-----eEEEEEccCC------eEE--EEec----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe--CCCCcee
Q 008058 92 GTGGG-----DVLALAVSAG------QLK--WRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLTGSLL 152 (579)
Q Consensus 92 ~~~~g-----~i~iwd~~~~------~~~--~~~~----~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd--~~~~~~~ 152 (579)
...|+ .+++|++..- .++ .++. .....++.+++.+.+-+.+++|-.+|.|..+. +...+-.
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence 55443 3999998642 222 1221 11356789999999989999999999999884 2211111
Q ss_pred eE--eecCCCCeeEEEEccCCCE--EEEECCeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 153 GK--FRASTKGISCMAVSSDGKM--LATAAGQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 153 ~~--~~~~~~~v~~l~~~p~g~~--l~~~~g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
+. ......+|+.+++..+++. +++....|.+|.+....+ ...+..|..++.|-.|++....+++++ +..+.+|
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY 240 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFY 240 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEE
Confidence 22 2223459999999998887 444449999999984442 455777888899999987766566664 5689999
Q ss_pred EcCCCc
Q 008058 228 RTDGVK 233 (579)
Q Consensus 228 d~~~~~ 233 (579)
+....+
T Consensus 241 ~sd~~~ 246 (933)
T KOG2114|consen 241 DSDGRG 246 (933)
T ss_pred cCCCcc
Confidence 987654
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=1.1e-05 Score=75.57 Aligned_cols=194 Identities=19% Similarity=0.297 Sum_probs=133.1
Q ss_pred CcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEE--EEEEccCCCEEEEEe-----CCCcEEEEeCC-CCceeeEee
Q 008058 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVS--AISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~ 156 (579)
...++++-.-|+ ..+||..+++....+.. ..+.-. --.|++||++|++.= ..|.|-+||.. +.+.+..|.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 556777777777 88899999987755532 122111 247999999999873 45789999998 667888898
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-C-------------------eEEEEECCCCeeeEE--e--ecCCCCEEEEEEecCCC
Q 008058 157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-g-------------------~i~vwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~ 212 (579)
.+.-....+.+.|||+.|+++. | ++...|..+|+.+.+ + .-|...|..+++.++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 8887888999999998888875 1 255567788887766 4 33778899999999997
Q ss_pred EEEEEecCCC-------eEEEEEcCCCccccceeEEee-----ecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEE
Q 008058 213 YVLSSAVGER-------YIALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW 279 (579)
Q Consensus 213 ~l~s~s~~d~-------~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iw 279 (579)
.++..- ..+ -+.+++.... . ..+.. ..-...+.+++++ +++.++++.+- .|.+.+|
T Consensus 176 V~~a~Q-~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 176 VAFAMQ-YQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EEEEEe-cCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence 655432 333 1333332221 1 00111 1123455667776 78888766654 7799999
Q ss_pred ECCCceeecccC
Q 008058 280 YGQNIEELRNTK 291 (579)
Q Consensus 280 d~~~~~~~~~~~ 291 (579)
|..+++.+....
T Consensus 245 d~~tg~~~~~~~ 256 (305)
T PF07433_consen 245 DAATGRLLGSVP 256 (305)
T ss_pred ECCCCCEeeccc
Confidence 999998876543
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=86.69 Aligned_cols=141 Identities=15% Similarity=0.272 Sum_probs=108.6
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeeEeecCCCCeeE
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~ 164 (579)
++.+.+-.|.+-|+.+|-.. .+ ...+.|.++.|...++.++.|..+|.|..+|++.+ .+.+.+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 45556667888888887653 22 25578999999998999999999999999999865 3444444 7888999
Q ss_pred EEEcc-CCCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEE--EEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 165 l~~~p-~g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~~v~~l--~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
+..-. ++++|.+.+ |.|++||++.-++ +.++.||...-.-+ -+.+....++++| +|...+||.++.+...
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence 88776 666776666 9999999997666 88999997654443 3456667888887 7999999999998754
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.58 E-value=1.3e-06 Score=90.51 Aligned_cols=183 Identities=15% Similarity=0.224 Sum_probs=134.2
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
++..++.|+-...+..+|+.+.+......- ..+.|+-++. +++++++|...|+|.+-|..+.+.++++.+|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 467788888888899999999887654422 2334666655 6889999999999999999999999999999999877
Q ss_pred EEEccCCCEEEEEC---C--------eEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCC
Q 008058 165 MAVSSDGKMLATAA---G--------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g--------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+.. .|+.|++++ + -|+|||++..+.+.-+.-+.++ .-+.|+|.- ..+++++ ..|...+-|..+.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence 665 588898887 1 4899999988877666656555 557888853 3455555 5888888884433
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
.... ..++........+....++ ++|..++.|..+|.|.+|.
T Consensus 299 sNP~-~~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPP-AGVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCc-cceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence 2211 1112222222335666666 8999999999999999997
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=87.51 Aligned_cols=276 Identities=13% Similarity=0.159 Sum_probs=168.3
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE--------------EEEecCCCCCCEEEEEEccCCCE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL--------------KWRLSDCHPGGVSAISFATHGSC 131 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--------------~~~~~~~h~~~V~~l~~~~~~~~ 131 (579)
....|+.|... ..+++.|+.||.+++..+.+... ..+.+.||.+.|.-+.|+.+.+.
T Consensus 15 vkL~c~~WNke---------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 15 VKLHCAEWNKE---------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred ceEEEEEEccc---------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc
Confidence 34568889775 67899999999999988765311 22345799999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEee--cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-EEeecCCCCEEEEE
Q 008058 132 IYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMT 206 (579)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~-~~~~~h~~~v~~l~ 206 (579)
|-+...+|.|.+|-+-.|.-...+. ..+.-|.+++|+.||..++... |.|.+=.++..+.. +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 9999999999999987775333221 1345789999999999888775 77766655443321 12222 2244789
Q ss_pred EecCCCEEEEEecCCCeEEEEEcCCCcccc--ceeEEee----ecCceeeEeEEecCC---cccCCCcEEEEEEcCCeEE
Q 008058 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQS--ASCVLAM----EHPAVFMDCRCIDNG---GVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 207 ~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~l~s~~~dg~i~ 277 (579)
|++|.+.++.+- ..|.+.+||.+..-... ..|.... ..-+..+....|... ...|+...++++-..|.+.
T Consensus 164 ws~D~~~~Lf~~-ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKK-ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhh-cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 999998777664 68999999987653211 1121111 111111222222211 1236888999999999998
Q ss_pred EEECCCc-eeecccCCceEEeeecccCcccccccchhhhhccccceecC----CceEEEEEeCCCCCceeEEEecCCCCc
Q 008058 278 IWYGQNI-EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP----ASVHTFVAYGLLLKPSFQKILVNSGED 352 (579)
Q Consensus 278 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~h~~~v 352 (579)
|-.-.+. +++---.+.+ +. ...+++++. .++.++.+..... ...+...++| ....++......+
T Consensus 243 iMR~eND~~Pvv~dtgm~--~v-gakWnh~G~----vLAvcG~~~da~~~~d~n~v~Fysp~G----~i~gtlkvpg~~I 311 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTGMK--IV-GAKWNHNGA----VLAVCGNDSDADEPTDSNKVHFYSPYG----HIVGTLKVPGSCI 311 (1189)
T ss_pred hhhhcCCCCCeEEecccE--ee-cceecCCCc----EEEEccCcccccCccccceEEEeccch----hheEEEecCCcee
Confidence 8753322 1111111111 00 112344544 5555555432111 1122333343 3344666777788
Q ss_pred EEEeecCCccee
Q 008058 353 INLNCSQDGVLL 364 (579)
Q Consensus 353 ~~~~~s~dg~~l 364 (579)
+.++|-..|.-+
T Consensus 312 t~lsWEg~gLri 323 (1189)
T KOG2041|consen 312 TGLSWEGTGLRI 323 (1189)
T ss_pred eeeEEcCCceEE
Confidence 888888777665
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.55 E-value=0.00011 Score=66.99 Aligned_cols=195 Identities=12% Similarity=0.129 Sum_probs=118.2
Q ss_pred EEEEECCCeEEEEEccCC--eEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC------
Q 008058 89 LVLGTGGGDVLALAVSAG--QLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------ 158 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~--~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------ 158 (579)
+++...|..|-|=..+.+ .++ .++.+.....=+-++|+||+..|+.+...|+|++||+.. ..+..+...
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d 89 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGD 89 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCc
Confidence 444555566666554432 111 123333444567899999999999999999999999864 433343321
Q ss_pred -CCCeeEEEEccC-------CCEEEEEC-CeEEEEECCC-----CeeeEEee---cCCCCEEEEEEecCCCEEEEEecCC
Q 008058 159 -TKGISCMAVSSD-------GKMLATAA-GQLKTFNCSD-----HKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 159 -~~~v~~l~~~p~-------g~~l~~~~-g~i~vwd~~~-----~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
...|..+.|.+- ..+++... |.++-|-+.. .+...+|. .+...|.++.++|..+.|+.+|...
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 235666666542 23555554 7776665432 22333332 2467899999999999888887533
Q ss_pred Ce----------EEEEEcCCCcccc---------------ceeEEee---------ecCceeeEeEEecCCcccCCCcEE
Q 008058 222 RY----------IALWRTDGVKKQS---------------ASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 222 ~~----------i~vwd~~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
.. +..|.+-++..-- ....+.+ ......+--+..+ |||..|
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS-----Pdg~~L 244 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS-----PDGSLL 244 (282)
T ss_pred CCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC-----CCCCEE
Confidence 22 5667664432110 0000000 0112222333444 999999
Q ss_pred EEEEcCCeEEEEECCCceeecc
Q 008058 268 LAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 268 ~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
|+...+|.|.+|++.+.+..+.
T Consensus 245 a~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 245 ACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred EEEEcCCeEEEEecCcchhhcc
Confidence 9999999999999998877654
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=4e-07 Score=58.09 Aligned_cols=39 Identities=23% Similarity=0.604 Sum_probs=36.3
Q ss_pred CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
++++.++.+|.++|++|+|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 367889999999999999999999999998 799999997
No 307
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=0.00026 Score=63.36 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=96.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
..+++.|+-.+.+.--|..+|....+-.- ...+.+-+..- ++++++|+.+|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-------------------g~RiE~sa~vv----------gdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-------------------GVRIECSAIVV----------GDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-------------------CceeeeeeEEE----------CCEEEEEEccC
Confidence 35777888888888899999987764321 00010101010 78899999999
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc-CCCEEE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA 175 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~ 175 (579)
.+++.+..+|...+.+.....-.+. ....+++..++.++.|++.+..|.++..++.+.+...+...+-++.| ++.+.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 9999999999877666432222222 23467899999999999999999999999988776665555566666 565555
Q ss_pred EEC-CeEEEEECC
Q 008058 176 TAA-GQLKTFNCS 187 (579)
Q Consensus 176 ~~~-g~i~vwd~~ 187 (579)
+.. |.+.--...
T Consensus 153 a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 153 AITAGAVLAVTKN 165 (354)
T ss_pred EeccceEEEEccC
Confidence 444 655444433
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=1.4e-06 Score=77.34 Aligned_cols=190 Identities=11% Similarity=0.123 Sum_probs=111.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEE----------ccCCCEEEEEeCCCcEEEEeCCCCcee-e
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISF----------ATHGSCIYSAGADGMVCEIDPLTGSLL-G 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~----------~~~~~~l~s~~~dg~v~iwd~~~~~~~-~ 153 (579)
...|+.+..++.+..+...++.+...... .-.++..+++. +--+..+++++.||.+.+++.+.-..+ +
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~ 126 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS 126 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence 34567777777666665554443311100 01122222222 223567899999999999997642111 1
Q ss_pred EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 154 KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
.+......-.+.+....++.+.++. +..+.|+++..+.+..-......|++++-+|..+.++.+|.+||.+.+
T Consensus 127 ~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l 206 (319)
T KOG4714|consen 127 RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGL 206 (319)
T ss_pred hcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEE
Confidence 1111111222333444566776665 456777776543322111122348999999988888888879999999
Q ss_pred EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
||.+..... +-.+..+...+.-+.|.+ .++..|+++++||.+.-||..+
T Consensus 207 ~d~rn~~~p----~S~l~ahk~~i~eV~FHp----k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 207 WDARNVAMP----VSLLKAHKAEIWEVHFHP----KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEcccccch----HHHHHHhhhhhhheeccC----CCchheeEecCCCcEEEEcCCC
Confidence 999987433 112223333444444542 5788999999999999999765
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=7.2e-06 Score=83.55 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=128.9
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeE
Q 008058 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (579)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i 98 (579)
.||++.-.|.|.+||...+..+..+..+.. .+..++|.+..... ..+|++-.....|
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~------------------~~qdl~W~~~rd~S-----rd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSND------------------SVQDLCWVPARDDS-----RDVLLAIHGSSTL 137 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCc------------------chhheeeeeccCcc-----hheeEEecCCcEE
Confidence 577777789999999998888777764443 33456776654331 3678888888999
Q ss_pred EEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCceeeEeecCCC----------
Q 008058 99 LALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-------TGSLLGKFRASTK---------- 160 (579)
Q Consensus 99 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~-------~~~~~~~~~~~~~---------- 160 (579)
.+|+..+|+..+....+| ....|+.+.| |.+.+..-+..|.|.+-+.- .|+.++.-..|..
T Consensus 138 vLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at 216 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT 216 (1062)
T ss_pred EEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence 999999999998886544 4677899998 66677777777877776542 1233222222211
Q ss_pred ---------------CeeEEEEccCCC-EEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC--EEEEEecCC
Q 008058 161 ---------------GISCMAVSSDGK-MLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK--YVLSSAVGE 221 (579)
Q Consensus 161 ---------------~v~~l~~~p~g~-~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~s~~d 221 (579)
....++|+|.-+ .+...- ..+.++|++-..++....-..+.+.-+.+-|+++ .|+.. ..|
T Consensus 217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl-H~n 295 (1062)
T KOG1912|consen 217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL-HSN 295 (1062)
T ss_pred cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE-ecC
Confidence 011245677543 333333 8999999998888888776677777788888754 34444 579
Q ss_pred CeEEEEEcCC
Q 008058 222 RYIALWRTDG 231 (579)
Q Consensus 222 ~~i~vwd~~~ 231 (579)
|.+.+|--+.
T Consensus 296 G~ltirvrk~ 305 (1062)
T KOG1912|consen 296 GRLTIRVRKE 305 (1062)
T ss_pred CeEEEEEeec
Confidence 9999997654
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=6e-07 Score=82.82 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=112.1
Q ss_pred EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-----eeeEEeecCCCCEEEE
Q 008058 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-----KKMQKFSGHPGAVRFM 205 (579)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-----~~~~~~~~h~~~v~~l 205 (579)
++.+.+-.|-+-|+.+|.. +.|. .+..|.++.|...++++..|. |.|..+|++++ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 5566777888999887743 3344 566889999998899999998 89999999875 3344444 88999998
Q ss_pred EEec-CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 206 TFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 206 ~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
..-. ++++|++++ .+|+|++||.+..+... .+...+.|........+ .+++....|+++++|...+||.++.+
T Consensus 305 q~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l~~---~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 305 QILQFSQQKLMASD-MTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYLPA---HVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhccccceEeecc-CcCceeEeeehhhhccc--ceeeeeccccccccccc---ccccccceEEEccCeeEEEEEecccC
Confidence 7766 677888876 79999999999877532 23444444333222222 23467788999999999999999999
Q ss_pred eeecccCC
Q 008058 285 EELRNTKA 292 (579)
Q Consensus 285 ~~~~~~~~ 292 (579)
..+.+.+.
T Consensus 379 hLl~tipf 386 (425)
T KOG2695|consen 379 HLLCTIPF 386 (425)
T ss_pred ceeeccCC
Confidence 98887653
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=6.8e-07 Score=90.20 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=132.5
Q ss_pred CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+..|.++ .|+|.. ..+|+++.|..+..||+.+-.. +..+.. -....+-++|...+|.
T Consensus 114 sraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~------------------w~s~asqVkwnyk~p~- 172 (1081)
T KOG0309|consen 114 SRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS------------------WRSAASQVKWNYKDPN- 172 (1081)
T ss_pred ccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeec------------------ccccCceeeecccCcc-
Confidence 4566445 888865 5899999999999999986543 333221 1234456778776544
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE-eecC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~ 158 (579)
+.+.+....|.+||.+.|.......++|...|+.+.|+.- ...+.+++.||+|+.||......... ....
T Consensus 173 --------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 173 --------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred --------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 5666667779999999887655566789999999999763 33588999999999999864322211 1112
Q ss_pred CCCeeEEEEccCCCEEEE----ECCeEEE---------EECCC-CeeeEEeecCCCCEEEEEEecCC--------C--EE
Q 008058 159 TKGISCMAVSSDGKMLAT----AAGQLKT---------FNCSD-HKKMQKFSGHPGAVRFMTFSDNG--------K--YV 214 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~----~~g~i~v---------wd~~~-~~~~~~~~~h~~~v~~l~~~~~~--------~--~l 214 (579)
..+|..-.+.|=|+-.+. |++.+.+ |+..+ .+++.+|.||...|....|-..+ + .|
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence 346666666665443332 2233333 33333 36789999999988776664322 1 46
Q ss_pred EEEecCCCeEEEEEcCC
Q 008058 215 LSSAVGERYIALWRTDG 231 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~ 231 (579)
++=+ .|.++++|-+..
T Consensus 325 VTWS-kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWS-KDQTLRLWPIDS 340 (1081)
T ss_pred EEee-cCCceEeeeccH
Confidence 6665 799999998754
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.45 E-value=4.2e-05 Score=77.34 Aligned_cols=217 Identities=11% Similarity=0.094 Sum_probs=119.2
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-.+.++|+|++++.++ ||.-.|+.....+.... ......+|.+. +.
T Consensus 36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----------------------G~g~~~vw~~~----------n~ 81 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----------------------GSGLSFVWSSR----------NR 81 (443)
T ss_dssp SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----------------------EE-SEEEE-TS----------SE
T ss_pred eeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----------------------CceeEEEEecC----------cc
Confidence 3459999999999865 78888888554443321 12345667662 33
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++-..+++|.++.--+++....+... ..+..+-. |..|...+.+ .|.+||..+++.++.+... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 677777888999743333322222221 23444433 7777776544 7999999999999998743 48999999
Q ss_pred cCCCEEEEEC-CeEEEEECCCC-----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 169 SDGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 169 p~g~~l~~~~-g~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
++|++++..+ ..+++++.... ..+..+..-...|.+..|..+ .++.+. .. .++. +-.++..
T Consensus 154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~~Ge~~- 226 (443)
T PF04053_consen 154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LVNGETG- 226 (443)
T ss_dssp TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEE-
T ss_pred CCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EEcCCcc-
Confidence 9999999988 88888875432 133344333577899999876 455544 23 7776 4444422
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
.+..+ +..+..+.+. +....+.....|+.+..+.++..
T Consensus 227 --~i~~l---d~~~yllgy~-----~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 227 --IIAHL---DKPLYLLGYL-----PKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp --EEEE----SS--EEEEEE-----TTTTEEEEE-TT--EEEEE--HH
T ss_pred --eEEEc---CCceEEEEEE-----ccCCEEEEEECCCCEEEEEECHH
Confidence 22333 3334444444 66678888888888888876544
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.43 E-value=8.2e-07 Score=56.62 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.6
Q ss_pred eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058 107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 107 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd 145 (579)
+++..+ .+|.+.|++++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 344444 68999999999999999999999999999997
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.6e-05 Score=75.12 Aligned_cols=240 Identities=14% Similarity=0.098 Sum_probs=138.1
Q ss_pred CCCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
...-||++ +|||..+ ++..++.+..|+|.|+++..++..+..+ ...-+++|.-.+
T Consensus 192 ~g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------------------~~~wSC~wDlde--- 247 (463)
T KOG1645|consen 192 EGSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------------NQIWSCCWDLDE--- 247 (463)
T ss_pred cchhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-------------------CCceeeeeccCC---
Confidence 34568888 9999887 7888999999999999998888777543 123345666554
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCC--CCCCEEEEEEc------cCCCEEEEEeCCCcEEEEeCC--CCc
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------THGSCIYSAGADGMVCEIDPL--TGS 150 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~------~~~~~l~s~~~dg~v~iwd~~--~~~ 150 (579)
.++|+.|..+|.|.+||++..+-......+ ...+|..++.- +.|..++..+.+ ...|... .+.
T Consensus 248 -----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 248 -----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC 320 (463)
T ss_pred -----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence 678999999999999999865532111111 23455554433 234444444433 4455543 222
Q ss_pred eeeEee-cCCCCeeEEEEccCCCEEEEEC---------CeEEE-EECCCCeeeEEe-ecCC-CC---E---EEEEEecCC
Q 008058 151 LLGKFR-ASTKGISCMAVSSDGKMLATAA---------GQLKT-FNCSDHKKMQKF-SGHP-GA---V---RFMTFSDNG 211 (579)
Q Consensus 151 ~~~~~~-~~~~~v~~l~~~p~g~~l~~~~---------g~i~v-wd~~~~~~~~~~-~~h~-~~---v---~~l~~~~~~ 211 (579)
.....+ +..+...++..++..+.++... ..|-. -|-.+|..+..- .+|. ++ + ..+.-.++.
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 222222 1245566777777556555543 11222 123344443322 1221 11 1 112224566
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
++++..+...+.+.+||..+.+. +.++.-...+.+...+. ...+.+|++-+ |..++||..+
T Consensus 401 n~iv~~gd~tn~lil~D~~s~ev-----vQ~l~~~epv~Dicp~~----~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGDSTNELILQDPHSFEV-----VQTLALSEPVLDICPND----TNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cEEEEecCCcceeEEeccchhhe-----eeecccCcceeecceee----cCCcchhhhee-cceEEEEecC
Confidence 77777765668899999998763 34555555555555554 12344555544 5678888654
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=2e-07 Score=95.75 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=128.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.|++||-+.++|+.|+..|.|+++++.+|.....+.+|.+.++.+.-+.+ +..
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d---------------------------gs~ 1157 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD---------------------------GST 1157 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC---------------------------cce
Confidence 57799999999999999999999999999988888888877765443333 444
Q ss_pred EEEEEC-CC-eEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ec---CCCC
Q 008058 89 LVLGTG-GG-DVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RA---STKG 161 (579)
Q Consensus 89 l~~~~~-~g-~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~---~~~~ 161 (579)
.++.+. +. ...+|++.. +.....+ ..-.++.|+.....-+.|..-....+||++++....++ .+ ....
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred eeeeccccCchHHHhccccccCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 444433 33 378899865 2222222 23467788765444334444456889999999877763 22 1223
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
-++..|+|+.++++--+ .+||++..+.+..|...... ..=.|+|.|..++.-+ .|||+++-+..
T Consensus 1233 ~n~a~FsP~D~LIlndG---vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILNDG---VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS------EIWDMRTFKLL 1296 (1516)
T ss_pred ccccccCCCcceEeeCc---eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec------hhhhhHHHHHH
Confidence 37788999887776443 78999988877777644422 2347999999988764 48999986543
No 316
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.40 E-value=9.3e-05 Score=77.11 Aligned_cols=233 Identities=18% Similarity=0.236 Sum_probs=138.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecccccccccc-ccccccccccccCccceEEeeecccccccccCCcEEEEEE---
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTS-LYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT--- 93 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~--- 93 (579)
..++.++.+|.|.-+|.++|+.+..+.......... ..+.+ ..+ +..+++++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP------------~v~------------~~~v~vg~~~~ 166 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP------------TIV------------KKLVIIGSSGA 166 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC------------EEE------------CCEEEEecccc
Confidence 577788889999999999999988776332110000 00000 000 34455554
Q ss_pred ------CCCeEEEEEccCCeEEEEecCCCCC-------------------CE-EEEEEccCCCEEEEEeCCC--------
Q 008058 94 ------GGGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG-------- 139 (579)
Q Consensus 94 ------~~g~i~iwd~~~~~~~~~~~~~h~~-------------------~V-~~l~~~~~~~~l~s~~~dg-------- 139 (579)
.+|.+..+|..+|+..++....... .| ....+.+.+..++.++.++
T Consensus 167 ~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 167 EFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred ccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCc
Confidence 3578999999999998876432211 11 1234555567788887665
Q ss_pred ----------cEEEEeCCCCceeeEeecCCCCe------eEEEEc----cCCC---EEEEEC--CeEEEEECCCCeeeEE
Q 008058 140 ----------MVCEIDPLTGSLLGKFRASTKGI------SCMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 140 ----------~v~iwd~~~~~~~~~~~~~~~~v------~~l~~~----p~g~---~l~~~~--g~i~vwd~~~~~~~~~ 194 (579)
.|..+|..+|+.+..++...... ....+. -+|. .++.++ |.++..|.++|+.+..
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 79999999999888765321111 111111 1333 455555 8999999999998876
Q ss_pred eecCCCCEEEEEEecCCCEEEEEe-----------------cCCCeEEEEEcCCCccccceeEEeeecC---------ce
Q 008058 195 FSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEHP---------AV 248 (579)
Q Consensus 195 ~~~h~~~v~~l~~~~~~~~l~s~s-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~ 248 (579)
.... ...+..+| + .++..+ ..++.+.-.|..+++.. ...... ..
T Consensus 327 ~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~-----W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 327 RPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV-----WEKREGTIRDSWNIGFP 396 (488)
T ss_pred eEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-----eEeeCCccccccccCCc
Confidence 5421 11223333 2 222211 13577888888887643 222211 00
Q ss_pred eeE-eEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 249 FMD-CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 249 ~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
... ... ..+..|++++.||.++.+|.++|+.+...+
T Consensus 397 ~~~~~~~-------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 397 HWGGSLA-------TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred ccCcceE-------ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 000 111 245788899999999999999999886654
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.9e-05 Score=81.05 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=117.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.+++.|+-+|.|++++....- . +. ..|+.. ..+|.++++|+.||+|.+..+-+.+...++. ...++.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 7789999999999999976553 1 11 235433 5689999999999999999998888877765 45689999
Q ss_pred EEccC-----CCEEEEEC--CeEEEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 166 AVSSD-----GKMLATAA--GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 166 ~~~p~-----g~~l~~~~--g~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
+++|+ .+.+++|+ | +.++.-+- .+.-..+....++|.++.|. |.+++-+. ++| |++||...++...
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDG-VKVYDTPTRQRLT 193 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCC-cEEEeccccceee
Confidence 99997 56788888 6 77765321 11111355667999999997 66888875 455 9999998876431
Q ss_pred cee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
... -.....+.....-..|. +...|+. +...+|+|..++
T Consensus 194 ~i~~p~~~~R~e~fpphl~W~------~~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHWQ------DEDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred ccCCCCCCCCcccCCCceEec------CCCeEEE-ecCCeEEEEEEe
Confidence 000 00011122222234442 3444544 455578888776
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.30 E-value=1.2e-05 Score=83.47 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=124.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..+..|+-...+..+|..+++.........+ .++.+.- +++.+..|...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~------------------~v~imR~-----------Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS------------------GVTIMRY-----------NNRNLFCGDTR 196 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC------------------ceEEEEe-----------cCcEEEeeccc
Confidence 345566777666777788887776554321111 1111111 26889999999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
|+|.+-|+.+.+.+.++ ..|++.|.++.. .|+.|++||. |.-|++||++..+.+.-+.-+.++ .-+.
T Consensus 197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 99999999999999777 689999998877 6889998874 445899999987776665555443 5567
Q ss_pred EccCC-CEEEEEC--CeEEEEEC---CCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 167 VSSDG-KMLATAA--GQLKTFNC---SDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 167 ~~p~g-~~l~~~~--g~i~vwd~---~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
|+|.- ..+++++ |...+-|. .+.. .+..+..-.+.+..+.++++|..++.+- .+|.|.+|.
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence 77742 2333333 99999883 3321 1233333445599999999999998876 799999997
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.28 E-value=0.00084 Score=66.99 Aligned_cols=304 Identities=12% Similarity=0.082 Sum_probs=146.6
Q ss_pred ccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 14 s~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
|||+++++... ..+.+.|||+.+++....... ........|.|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------------------~~~~~~~~~sP~-------- 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------------------PPKLQDAKWSPD-------- 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------------------ETTBSEEEE-SS--------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------------------ccccccceeecC--------
Confidence 68998887742 246788999998776543221 122334555554
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCC----------------CCCEEEEEEccCCCEEEEEeC-CCcEEEEeCC
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAGA-DGMVCEIDPL 147 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h----------------~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~ 147 (579)
++.++... ++.|.+++..++....-...|. -+.-.++.|+|||++|+.... +..|..+.+.
T Consensus 54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 55566554 5789999988886553333331 112356789999999887653 3444444321
Q ss_pred CCceeeEeecCCC---CeeEEEEccCCCEEEEECCeEEEEECCCCeeeE-Ee----ecCCCCEEEEEEecCCCEEEE-Ee
Q 008058 148 TGSLLGKFRASTK---GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KF----SGHPGAVRFMTFSDNGKYVLS-SA 218 (579)
Q Consensus 148 ~~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~-~~----~~h~~~v~~l~~~~~~~~l~s-~s 218 (579)
. +..... .+..+.+---|.-- ..-.+.|+|+.+++... .. ..-...+..+.|.++++.++. -.
T Consensus 132 ~------~~~~~~~yp~~~~~~YPk~G~~n--p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 132 D------YSPPDSQYPEVESIRYPKAGDPN--PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp E------ESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred c------cCCccccCCcccccccCCCCCcC--CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 1 110110 22233332111111 00257888998876532 11 123456889999999983333 32
Q ss_pred cCCC---eEEEEEcCCCccccceeEEeeecCcee---eEeEEecCCcccCCCcEEEEEEcCC--eEEEEECCCceeeccc
Q 008058 219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRNT 290 (579)
Q Consensus 219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 290 (579)
..+. .+.++|..++... .+........+ -....+. ..++.++.....|| .|++++...+.... +
T Consensus 204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~~~-l 275 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKPRQ-L 275 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEEEE-S
T ss_pred ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEcccccceec-c
Confidence 2222 4667777776533 22222222111 1122221 03445555555677 55566666665332 2
Q ss_pred CCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008058 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (579)
......+.....+...++. ..++|..++ ...-++...... .....+.++..........|||||+++..++|
T Consensus 276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2222222111112223331 333444432 223344444322 12333444444433358999999999855554
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.28 E-value=6.1e-06 Score=75.15 Aligned_cols=216 Identities=13% Similarity=0.197 Sum_probs=132.7
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeeEeecCC------------CCeeEEEEccCC---CEEE
Q 008058 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRAST------------KGISCMAVSSDG---KMLA 175 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~------------~~v~~l~~~p~g---~~l~ 175 (579)
....|+++.|...|.|+++|...|.|.+|.-... +-...|++|. ..|..+.|..++ .+|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999998999999974422 1222355553 256777876543 3666
Q ss_pred EEC-CeEEEEECCCCee-------------------------------------e-----EEe-ecCCCCEEEEEEecCC
Q 008058 176 TAA-GQLKTFNCSDHKK-------------------------------------M-----QKF-SGHPGAVRFMTFSDNG 211 (579)
Q Consensus 176 ~~~-g~i~vwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~l~~~~~~ 211 (579)
++. .+|++|.+..... + +.. ..|...+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 776 8999998753200 0 011 2466678899999998
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeec----CceeeEeEEecCCcccCC-CcEEEEEEcCCeEEEEECCCcee
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
..++++ +|-.|.+|++.-.... ...+-.-++ -..++...-|+ |. ...+.-.+..|.|++-|++....
T Consensus 185 et~lSa--DdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFh-----p~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 185 ETLLSA--DDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFH-----PEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred heeeec--cceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccC-----HhHcceEEEecCCCcEEehhhhhhhh
Confidence 888875 5889999998754321 001111111 12344555555 43 45566677889999999864432
Q ss_pred ecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeec
Q 008058 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (579)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (579)
.... + .+..-..|+.-.. -+.+-...+..+.|+++|+++ +
T Consensus 257 cdn~-----------------~----klfe~~~D~v~~~------------------ff~eivsSISD~kFs~ngryI-l 296 (460)
T COG5170 257 CDNS-----------------K----KLFELTIDGVDVD------------------FFEEIVSSISDFKFSDNGRYI-L 296 (460)
T ss_pred ccCc-----------------h----hhhhhccCcccch------------------hHHHHhhhhcceEEcCCCcEE-E
Confidence 2111 0 1111111110000 011222357888999999999 8
Q ss_pred cccceecccceeee
Q 008058 367 SQSLLKSKRGRYVQ 380 (579)
Q Consensus 367 s~s~d~~~~~w~~~ 380 (579)
+.+ -.++++|++.
T Consensus 297 sRd-yltvkiwDvn 309 (460)
T COG5170 297 SRD-YLTVKIWDVN 309 (460)
T ss_pred Eec-cceEEEEecc
Confidence 876 6789999984
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.00056 Score=61.34 Aligned_cols=187 Identities=14% Similarity=0.141 Sum_probs=121.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+++.|+-.+.+.--|..+|..+++..-+ ..+-+-+.- -|++++.|...|.+++.+..+|.....|..-..-=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 578999999999999999999998876543 334333222 46789999999999999999998888877544322234
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeEEe
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
...+++..+..|+ ++.+..|.++..++.+.+...+.-.+-+..| ++...++ . ..|.+---........ ....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~-t~G~vlavt~~~~~~~---~~w~ 174 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-I-TAGAVLAVTKNPYSST---EFWA 174 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-e-ccceEEEEccCCCCcc---eehh
Confidence 5678899999998 8999999999988887764444444555666 4443333 3 3455544444333111 1111
Q ss_pred eecCceeeEe-EEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
.......... .+ -+..+..++-||.+.-|+ +.|+++..
T Consensus 175 ~~~~~PiF~splc--------v~~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 175 ATRFGPIFASPLC--------VGSSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred hhcCCccccCcee--------ccceEEEEEeccEEEEEc-CCCcEEEe
Confidence 1111111111 11 135667777888888888 66666653
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=8.8e-05 Score=76.41 Aligned_cols=174 Identities=11% Similarity=0.147 Sum_probs=123.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+++|+.|+-+|.|++++... .....+ .|... +. .|.++++|+.|
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~-~~~~~~-~~s~~---------------------------~~------~Gey~asCS~D 92 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQG-NPKTNF-DHSSS---------------------------IL------EGEYVASCSDD 92 (846)
T ss_pred hcceeeeccccceEEEEecCC-cccccc-ccccc---------------------------cc------CCceEEEecCC
Confidence 467899999999999998763 322222 11111 11 18899999999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCeeEEEEc
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~ 168 (579)
|+|.|..+-+++...++. -..++.+++++|+ .+.+++|+.-| +.++.-. ..+.-.......++|.++.|.
T Consensus 93 Gkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred CcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 999999998887664442 3468999999997 56799999888 7776522 111111345566799999996
Q ss_pred cCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCE------EEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 169 SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAV------RFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 169 p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v------~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
|+++|-++ --|++||..+++.+..++.....+ ..+.|.++.+ |+.| +..+|++..++.+
T Consensus 170 --g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 170 --GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKICSIKKR 235 (846)
T ss_pred --CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEEEEecc
Confidence 78999998 679999999988877665333332 3577877664 5554 6778999999843
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.6e-06 Score=79.15 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=138.6
Q ss_pred CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
..++..++-||.++.|-... +-........|.+.|.+++.+-+|..+.|.+. |..++++|+.+...+.-++-..- .
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l-P 98 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL-P 98 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC-C
Confidence 67899999999999998765 32222333568889999999999998999777 99999999987665533332111 1
Q ss_pred eEEEEc-cCC---CEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC-
Q 008058 163 SCMAVS-SDG---KMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV- 232 (579)
Q Consensus 163 ~~l~~~-p~g---~~l~~~~---g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~- 232 (579)
..+.|. ..| ..++++. +.+.++|-.... ....-.-|.++|..+.+.|.+..+++.. ..|.|.-|.....
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF 177 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence 122222 222 1444444 899999977543 2333356899999999999998887765 6899999998741
Q ss_pred ccccceeEEee---------ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058 233 KKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
+.......+.+ ........+..|+ |+|..+.+-+.|..|++++..+++.++.+..
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 11111111222 2223344566676 9999999999999999999999998876654
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.17 E-value=0.0002 Score=73.61 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=73.4
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCC----C-ceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------
Q 008058 126 ATHGSCIYSAGADGMVCEIDPLT----G-SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------ 191 (579)
Q Consensus 126 ~~~~~~l~s~~~dg~v~iwd~~~----~-~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~------ 191 (579)
.++|++... .++.|.+.|..+ + +.+..+. -......++++|||+++++++ +++.|+|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 457887665 367899999987 3 4455554 345678999999999999988 7999999987542
Q ss_pred ------eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 192 ------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 192 ------~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
+.+..--.+| ...+|.++|....+.- -|..|..|++..
T Consensus 362 ~~~~~vvaevevGlGP-LHTaFDg~G~aytslf-~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLF-LDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCc-ceEEECCCCCEEEeEe-ecceeEEEehHH
Confidence 3333333333 4568999987555554 699999999876
No 325
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.12 E-value=0.0025 Score=66.78 Aligned_cols=151 Identities=20% Similarity=0.269 Sum_probs=93.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--- 94 (579)
..++.++.|+.|.-.|..+|+.+..+............+.+ +.. +..+++++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v~------------~g~Vivg~~~~~ 176 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LVV------------KGKVITGISGGE 176 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EEE------------CCEEEEeecccc
Confidence 45677788999999999999998876531110000000000 000 344666553
Q ss_pred ---CCeEEEEEccCCeEEEEecCCCC------------------------------CCEE-EEEEccCCCEEEEEeCC--
Q 008058 95 ---GGDVLALAVSAGQLKWRLSDCHP------------------------------GGVS-AISFATHGSCIYSAGAD-- 138 (579)
Q Consensus 95 ---~g~i~iwd~~~~~~~~~~~~~h~------------------------------~~V~-~l~~~~~~~~l~s~~~d-- 138 (579)
+|.|..+|..+|+.+++...... +.++ .+.+.|+..+++.+..+
T Consensus 177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~ 256 (527)
T TIGR03075 177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS 256 (527)
T ss_pred cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence 67899999999998877543211 1122 34666666666665422
Q ss_pred ---C-----------cEEEEeCCCCceeeEeecCCC---------CeeEEEEccCCC---EEEEEC--CeEEEEECCCCe
Q 008058 139 ---G-----------MVCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTFNCSDHK 190 (579)
Q Consensus 139 ---g-----------~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~p~g~---~l~~~~--g~i~vwd~~~~~ 190 (579)
+ .|...|+++|+....|+.... ...-+.+..+|+ .++.+. |.+++.|-++|+
T Consensus 257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 2 577789999998888775322 112223334666 566666 899999999998
Q ss_pred ee
Q 008058 191 KM 192 (579)
Q Consensus 191 ~~ 192 (579)
.+
T Consensus 337 ~i 338 (527)
T TIGR03075 337 LL 338 (527)
T ss_pred ee
Confidence 76
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.0021 Score=67.01 Aligned_cols=195 Identities=13% Similarity=0.199 Sum_probs=115.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC-cEEEEEECC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGTGG 95 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~~~~~ 95 (579)
+..+..++.++.|.-.|..+|+.+..++........ . +. .... ....+ + ..+++++.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~--~-~~----~~~~--g~~~~------------~~~~V~v~~~~ 119 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG--C-CD----VVNR--GVAYW------------DPRKVFFGTFD 119 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc--c-cc----cccC--CcEEc------------cCCeEEEecCC
Confidence 445667777899999999999988777533210000 0 00 0000 00000 3 678899999
Q ss_pred CeEEEEEccCCeEEEEecCCCCC----CEE-EEEEccCCCEEEEEe---------CCCcEEEEeCCCCceeeEeecCCCC
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPG----GVS-AISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~----~V~-~l~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
|.|..+|..+|+.+++....... .+. +..+. +..++.++ .+|.++.+|..+|+.+..++.....
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 99999999999998887432110 011 11221 24455553 3688999999999988776542110
Q ss_pred --------------------e-eEEEEccCCCEEEEEC--C------------------eEEEEECCCCeeeEEeec--C
Q 008058 162 --------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSG--H 198 (579)
Q Consensus 162 --------------------v-~~l~~~p~g~~l~~~~--g------------------~i~vwd~~~~~~~~~~~~--h 198 (579)
+ .+.++++.+..++.+. + .|.-+|..+|+.+-++.. |
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 1 1244555556666664 3 699999999998877642 2
Q ss_pred CC----CEEEEEEe----cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 199 PG----AVRFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 199 ~~----~v~~l~~~----~~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.. ......+. -++. .++.++ .+|.+...|..+++..
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~ 324 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI 324 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence 11 00111111 1232 455554 7999999999999754
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.0013 Score=67.75 Aligned_cols=246 Identities=10% Similarity=0.032 Sum_probs=142.6
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCeEEEEeccccc-cccccccccccccccccCccceEEe-eecccccccccCCcEEEE-
Q 008058 16 ALDYFAICSG-DARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKW-LSVDRKKKRKLGSSLLVL- 91 (579)
Q Consensus 16 dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~l~~- 91 (579)
||+||..-.. ..+|-..+++..++-..+.-+.. .+....|... .+.......-.+ .|.+++ +..+..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~---p~t~yv~~~~e~~~PlpnD------Gk~l~~~ 210 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKI---PRTGYVFCNGEFRIPLPND------GKDLDDP 210 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCcccc---CCccEEEeCcccccccCCC------CCEeecc
Confidence 7888887764 56777777777666554442221 1111111100 000110100011 111222 433332
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
.-..+.+.+.|..+.+..+++.-+ +....+.++|+|+++++++.+ .++...+..+...+..|... .+ .++
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~ 284 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEA 284 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHh
Confidence 233355888899988887777543 355778899999998887632 23333333222222222111 01 134
Q ss_pred ccCCCEEEEECCeEEEEECCC-----CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc------c
Q 008058 168 SSDGKMLATAAGQLKTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------S 236 (579)
Q Consensus 168 ~p~g~~l~~~~g~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~------~ 236 (579)
.++|++...+++.|.+.|.++ .+.+..+. -......+.++|||+++++++.-+.++.|.|+.+.+.. .
T Consensus 285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred hhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 568888887778999999998 34555555 34556899999999999998877999999999886521 0
Q ss_pred cee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
..+ +....-.... .-..|+ ++|....+.-.|..|-.||++.
T Consensus 364 ~~~vvaevevGlGP-LHTaFD-----g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGP-LHTAFD-----GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCc-ceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence 011 1111111122 234455 7888777788899999999876
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.09 E-value=0.00063 Score=73.58 Aligned_cols=193 Identities=13% Similarity=0.164 Sum_probs=126.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+++.|-.+++-++.+..+|.|.+-|..+..... .|..+..+.++.|.+. ...
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------vg~vd~GI~aaswS~D---------ee~ 123 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETLELEI-------------------VGNVDNGISAASWSPD---------EEL 123 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEcccccceee-------------------eeeccCceEEEeecCC---------CcE
Confidence 666888888888888999999998877665321 2445666778888776 677
Q ss_pred EEEEECCCeEEEEEc----cCCeEE-------------------EEecCC---------------------CCCCEEEEE
Q 008058 89 LVLGTGGGDVLALAV----SAGQLK-------------------WRLSDC---------------------HPGGVSAIS 124 (579)
Q Consensus 89 l~~~~~~g~i~iwd~----~~~~~~-------------------~~~~~~---------------------h~~~V~~l~ 124 (579)
++..+..+++.+-.- -..+.+ .++ .| ..+.=+++.
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceee-ecchhhhcccccccccccccchhhccCCceEE
Confidence 888888888666432 110000 011 00 111224589
Q ss_pred EccCCCEEEEEe----CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCe----
Q 008058 125 FATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK---- 190 (579)
Q Consensus 125 ~~~~~~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~---- 190 (579)
|..||+++++.. .+ ..|++||-. |..-.+-....+.=.+++|-|.|..+++-. +.|.+|.- +|-
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccc
Confidence 999999988732 33 789999965 544333222233446899999999999864 56888863 332
Q ss_pred eeEEeecCCCCEEEEEEecCCCEEEE---EecCCCeEEEEEcCCCc
Q 008058 191 KMQKFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK 233 (579)
Q Consensus 191 ~~~~~~~h~~~v~~l~~~~~~~~l~s---~s~~d~~i~vwd~~~~~ 233 (579)
....++....+|..++|+.++..|+. .. ....|++|-+.+..
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH 325 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence 22223334455899999999998877 33 34459999887653
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.3e-05 Score=72.73 Aligned_cols=199 Identities=17% Similarity=0.168 Sum_probs=136.5
Q ss_pred eEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
++++.|-+|..++|++. |..++++|+.+-....-++.. | .-..+.|.....+. -.
T Consensus 57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~--------~-----------lPg~a~wv~skGd~-----~s 112 (558)
T KOG0882|consen 57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV--------D-----------LPGFAEWVTSKGDK-----IS 112 (558)
T ss_pred HhhhccccceeEeeccCcccceeEEEeeccchhhhcccc--------c-----------CCCceEEecCCCCe-----ee
Confidence 44577889999999877 999999999876655433311 1 11234555443221 22
Q ss_pred EEEEEE-CCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeE-----
Q 008058 88 LLVLGT-GGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGK----- 154 (579)
Q Consensus 88 ~l~~~~-~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~----- 154 (579)
.++++. .+|.|.++|-..+.+ ...+.+-|..+|..+.+++.+..+++....|.|.-|.... .+....
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 344444 568899999876653 3334456999999999999999999999999999999762 111111
Q ss_pred ----eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------------------------------
Q 008058 155 ----FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-------------------------------- 196 (579)
Q Consensus 155 ----~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-------------------------------- 196 (579)
+.-.+....++.|+|+|..+.+-+ ..|++++.++|+.++.+.
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 112345678999999999999877 799999999887654331
Q ss_pred cCCC-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 197 GHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 197 ~h~~-~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.|.. .-+.+.|...|++|+.++ -= -|++.++.++.
T Consensus 273 k~~~~~~~~~~fdes~~flly~t-~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGT-IL-GIKVINLDTNT 308 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeec-ce-eEEEEEeecCe
Confidence 1211 234567888899998876 23 38888888765
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.08 E-value=0.00029 Score=75.20 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=95.5
Q ss_pred CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008058 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (579)
Q Consensus 25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~ 104 (579)
....|+-.|+..|+.+.+++.+.... ...|.++-.-..+ .+..-++|-.+..+..||++
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aql--------------------t~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQL--------------------TNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcc-eeEeccccccccc--------------------CCCceEEEECCCceEEeccC
Confidence 45778888999999999998665431 1112221000000 13456899999999999998
Q ss_pred CCe--EEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCCEEEEEC-
Q 008058 105 AGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA- 178 (579)
Q Consensus 105 ~~~--~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~~l~~~~- 178 (579)
-.. ++.... -......+|++-+.+| +|+.|+.+|.||+||- .|+.-+ .+.+-..+|.+|+.+.||+++++.+
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 632 332111 1233457788877776 7999999999999994 444333 3666678999999999999998887
Q ss_pred CeEEEEEC
Q 008058 179 GQLKTFNC 186 (579)
Q Consensus 179 g~i~vwd~ 186 (579)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 77888775
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00022 Score=73.78 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=81.3
Q ss_pred EEccCCCEEEEEeC----CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 12 SFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fs~dg~~las~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+|+|...+||.++. .|.|.||- ++|++....+ .....++++|+|. .-
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~~ 72 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------EF 72 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------HH
Confidence 89999999998874 57787773 4555332111 0123456899886 45
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
.|+.|-.-|.+.+|...+.+.- +....|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6788888999999998877654 4446799999999999999999999999999999765
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0088 Score=60.21 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=130.0
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
..+....++.|.+.|..+.........+. ....++++|+++.++.+.. ++++.+.|..+++...+......+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 44445556889999988887766654444 6788999999988887765 689999999989888875543334 89
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeE-E----eecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCcc
Q 008058 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-K----FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~-~----~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~~~~ 234 (579)
++++|+|+.++.+. +.|.+.|..+..... . ...+ .....+.+.|+|.++...-..+ +.+...|..++..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 99999999777765 899999977665543 1 2212 2335789999999776665333 5788888877653
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCceeecc
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN 289 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~ 289 (579)
.. ..... ... ........ |+|.++.+... .+.+.+-|..+......
T Consensus 244 ~~--~~~~~-~~~-~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 244 TA--TDLPV-GSG-APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EE--ecccc-ccC-CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 21 00011 111 22334444 89999988854 58899998887766544
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.01 E-value=1.2e-06 Score=87.38 Aligned_cols=191 Identities=10% Similarity=0.126 Sum_probs=125.8
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 14 SPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
..|...++.|..+|.|.+-..+...-. +++. ++ ....+++++|.+.+ .+.|++|
T Consensus 67 ~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t----------------p~-~ar~Ct~lAwneLD--------tn~LAag 121 (783)
T KOG1008|consen 67 GNDRCILAVGSATGNISLLSVRHPHDSSAEVT----------------PG-YARPCTSLAWNELD--------TNHLAAG 121 (783)
T ss_pred CCchhhhhhccccCceEEeecCCcccccceec----------------cc-cccccccccccccc--------HHHHHhh
Confidence 334458889999999998776533221 1111 12 25678999998875 5566666
Q ss_pred EC----CCeEEEEEccCC--e--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCee
Q 008058 93 TG----GGDVLALAVSAG--Q--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGIS 163 (579)
Q Consensus 93 ~~----~g~i~iwd~~~~--~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~ 163 (579)
-. +..+.|||+.++ . ....+..+......+++|-.+.+.+.+|.....+.++|++.. .....+ ....+.
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vq 199 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQ 199 (783)
T ss_pred hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcc
Confidence 43 345999999876 1 112222224456678899988889999999999999998732 222222 233566
Q ss_pred EEEEcc-CCCEEEEEC-CeEEEEE-CCCC-eeeEEeecCC----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCC
Q 008058 164 CMAVSS-DGKMLATAA-GQLKTFN-CSDH-KKMQKFSGHP----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 164 ~l~~~p-~g~~l~~~~-g~i~vwd-~~~~-~~~~~~~~h~----~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~ 231 (579)
.+.++| .+.++++-. |.|.+|| .+.- .++..+...+ ..+..++|+|... .+++...+.++|+.+++..
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 788888 788888887 9999999 4332 2233332222 2488999998644 4555555678999999864
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.96 E-value=7.1e-05 Score=74.95 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC
Q 008058 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH 189 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~ 189 (579)
.....|.+++++|+...++.|+.||.|.+||...+... +....-.++.++|+|+|.++++|+ |.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46678999999999999999999999999998766332 222345678999999999999999 99999998644
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.94 E-value=0.012 Score=57.32 Aligned_cols=224 Identities=11% Similarity=0.019 Sum_probs=113.4
Q ss_pred ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe--EEEEEccCCeEEE
Q 008058 33 DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKW 110 (579)
Q Consensus 33 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~~~~~~~ 110 (579)
|..||..+..++.........-|..+ +|... +..+|+.+..+|. +.+.|+.+++..+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~-------------~ft~d--------G~kllF~s~~dg~~nly~lDL~t~~i~Q 74 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQN-------------CFTDD--------GRKLLFASDFDGNRNLYLLDLATGEITQ 74 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS---------------B-TT--------S-EEEEEE-TTSS-EEEEEETTT-EEEE
T ss_pred CCCCCceEEEecCCCCcccceeecCC-------------CcCCC--------CCEEEEEeccCCCcceEEEEcccCEEEE
Confidence 67788877777654443332333222 23221 1345555555655 8888899998874
Q ss_pred EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE--ccCCCEEEEEC----------
Q 008058 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA---------- 178 (579)
Q Consensus 111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~p~g~~l~~~~---------- 178 (579)
-. .+-.....+..++|+++.++.......|+..|+.+.+....+......+-...| +.|+..++..-
T Consensus 75 LT-dg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 75 LT-DGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp ----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred Cc-cCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence 33 322222335677888888877766778999999998876666666665554555 34666655431
Q ss_pred --------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---CCC-eEEEEEcCCCccccceeE
Q 008058 179 --------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---GER-YIALWRTDGVKKQSASCV 240 (579)
Q Consensus 179 --------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---~d~-~i~vwd~~~~~~~~~~~~ 240 (579)
..|.-.|+.+|+....+. -...+..+.|+|....++.-|. +|. .-+||-++...... ..+
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v 231 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKV 231 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eee
Confidence 146667888887654444 4567889999998776666552 222 23677766543221 122
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEc-----CCeEEEEECCCcee
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE 286 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~ 286 (579)
... .....+.--+|. |||..|.--+. +..|.-+|+.+++.
T Consensus 232 ~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 232 HRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp S----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred ecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 222 235555666776 89988766443 33566778887754
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.94 E-value=0.01 Score=56.94 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=125.3
Q ss_pred ccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 14 SPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
...++.|+.|..+| +.+++... .......+. . .++.+...+. -+ +++.
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-~-------------------~I~ql~vl~~---------~~-~llv 52 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL-S-------------------SITQLSVLPE---------LN-LLLV 52 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeec-c-------------------eEEEEEEecc---------cC-EEEE
Confidence 34678999999998 89998832 222222210 0 0222222221 22 2333
Q ss_pred ECCCeEEEEEccCCeEEEEe-------------cCCCCCCEEEEE--EccCCCEEEEEeCCCcEEEEeCCCC-----cee
Q 008058 93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL 152 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~-------------~~~h~~~V~~l~--~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~ 152 (579)
-.|+.+.++++..-...... .......+..++ -...+...+......+|.+|..... +..
T Consensus 53 Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 53 LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 34599999998754332210 112234455555 1223444444445668888876543 345
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEec
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~l~s~s~ 219 (579)
+.+.- ...+.+++|. ++.++.|. +...+.|+.++.....+... ..++..+.. +++.+|++
T Consensus 133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--- 205 (275)
T PF00780_consen 133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--- 205 (275)
T ss_pred EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE---
Confidence 55553 4678999998 55777775 88999999977554333111 123333333 44556654
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (579)
.|..-...|.... .. ....... ........... .||++.+. +.|.||++.+++.++.+......
T Consensus 206 ~~~~g~fv~~~G~-~~-r~~~i~W--~~~p~~~~~~~--------pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 206 YDNIGVFVNKNGE-PS-RKSTIQW--SSAPQSVAYSS--------PYLIAFSS-NSIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred ecceEEEEcCCCC-cC-cccEEEc--CCchhEEEEEC--------CEEEEECC-CEEEEEECcCCcEEEEEECCCEE
Confidence 2444444454433 22 1122222 23333333332 47776666 55999999999988877655444
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.92 E-value=0.0021 Score=69.65 Aligned_cols=189 Identities=13% Similarity=0.215 Sum_probs=121.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC----CC-------------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----LT------------- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~----~~------------- 148 (579)
...+++++..|.|.+-|+.+.... +...-..+|.+++|+||++.++..+.++++.+-+- -.
T Consensus 80 ~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 80 TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence 667999999999999999887653 22334578999999999999998888888776432 11
Q ss_pred ------CceeeEeecCC---------------------CCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE
Q 008058 149 ------GSLLGKFRAST---------------------KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 149 ------~~~~~~~~~~~---------------------~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~ 194 (579)
|+....|++.. +.=++|+|--||+++++.. ..|++||-+ |..-.+
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~ 236 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST 236 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence 11111222111 1124589999999999843 589999976 433222
Q ss_pred eecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE--
Q 008058 195 FSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-- 270 (579)
Q Consensus 195 ~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-- 270 (579)
-....+.-.+++|-|.|..+++... .|+.|.++.-+.-.... .....+.....+.-++|+ .++..|++.
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wn-----s~sdiLAv~~~ 309 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWN-----SNSDILAVVTS 309 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccchheeeec-----CCCCceeeeec
Confidence 2223344467899999998887542 35578888766543221 222222333335666776 677888773
Q ss_pred -EcCCeEEEEECCCc
Q 008058 271 -SETGVCYIWYGQNI 284 (579)
Q Consensus 271 -~~dg~i~iwd~~~~ 284 (579)
.....|++|-..+.
T Consensus 310 ~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccceEEEEEecCe
Confidence 33445999976543
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.90 E-value=0.034 Score=57.04 Aligned_cols=240 Identities=12% Similarity=0.111 Sum_probs=126.1
Q ss_pred EEEEccCCCEEEEE-eCCC----cEEEEECCCCeEEEEe-ccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 10 LTSFSPALDYFAIC-SGDA----RIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 10 ~~~fs~dg~~las~-s~dg----~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++||||+++|.+ +..| +|+|+|+.+|+.+... . ......+.|.+.+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--------------------~~~~~~~~W~~d~------ 181 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--------------------NPKFSSVSWSDDG------ 181 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--------------------EEESEEEEECTTS------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--------------------ccccceEEEeCCC------
Confidence 34899999999965 3333 5999999999765421 1 1122237776653
Q ss_pred cCCcEEEEEECC----------CeEEEEEccCCeEE-EEecCCCC-CC-EEEEEEccCCCEEEEEe-CC---CcEEEEeC
Q 008058 84 LGSSLLVLGTGG----------GDVLALAVSAGQLK-WRLSDCHP-GG-VSAISFATHGSCIYSAG-AD---GMVCEIDP 146 (579)
Q Consensus 84 ~~~~~l~~~~~~----------g~i~iwd~~~~~~~-~~~~~~h~-~~-V~~l~~~~~~~~l~s~~-~d---g~v~iwd~ 146 (579)
..++++.... ..|+.|.+.++... ..++.+.. .. ...+..++|+++++... .. ..+++.|+
T Consensus 182 --~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 182 --KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp --SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred --CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 2333443332 22788888765422 11222222 22 67889999999976543 22 34788888
Q ss_pred CCC----ceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEE
Q 008058 147 LTG----SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 147 ~~~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l 214 (579)
..+ .....+......+....-+..+.+++... +.|...++..... ...+..|...+.--.+...+.+|
T Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp CCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred cccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence 764 23333433444444333333555555543 5787888887652 33555566644444444456666
Q ss_pred EEEecCCC--eEEEEEcC-CCccccceeEEeeecCceeeEeEEecCCcccCCCcE-EEEEEc---CCeEEEEECCCceee
Q 008058 215 LSSAVGER--YIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISE---TGVCYIWYGQNIEEL 287 (579)
Q Consensus 215 ~s~s~~d~--~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~ 287 (579)
+.....++ .|+++++. +.... ...+..... +...... +++.. .++.+. -++++.||+.+++..
T Consensus 340 vl~~~~~~~~~l~v~~~~~~~~~~----~~~~p~~g~-v~~~~~~-----~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLDDGKESR----EIPLPEAGS-VSGVSGD-----FDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETTEEEEEEEETT-TEEEE----EEESSSSSE-EEEEES------TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEECCccEEEEEECCCCcEEe----eecCCcceE-EeccCCC-----CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 66654455 58888888 33211 122222221 2222222 33333 233322 568888998888653
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.89 E-value=0.00025 Score=71.16 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=63.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| +|++++|+.+.|+.|+.||.|.+||...+..... + .....+.++|+|.
T Consensus 259 ~s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~------ 310 (545)
T PF11768_consen 259 PSQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD------ 310 (545)
T ss_pred CCcc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC------
Confidence 3567 8899999999999999999999999876643321 1 1234567889886
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC 115 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~ 115 (579)
+..+++|+..|.+.+||+.-+....++..+
T Consensus 311 ---gai~~V~s~qGelQ~FD~ALspi~~qLlsE 340 (545)
T PF11768_consen 311 ---GAIFVVGSEQGELQCFDMALSPIKMQLLSE 340 (545)
T ss_pred ---CcEEEEEcCCceEEEEEeecCccceeeccc
Confidence 889999999999999999877665555433
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.89 E-value=0.013 Score=56.13 Aligned_cols=193 Identities=13% Similarity=0.184 Sum_probs=122.2
Q ss_pred EEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 12 SFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
++|.||++++.... ...|.|-|+..++.+.++..+. |..-.|.. +..+
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------------------C~~iyP~~--------~~~F 150 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------------------CWLIYPSG--------NRGF 150 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------------------EEEEEEEE--------TTEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------------------EEEEEecC--------CCce
Confidence 88999998887653 5679999999999888775322 22222322 4458
Q ss_pred EEEECCCeEEEEEcc-CCeEEEE---ecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEeec-----
Q 008058 90 VLGTGGGDVLALAVS-AGQLKWR---LSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFRA----- 157 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~-~~~~~~~---~~~~h~~~V~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~----- 157 (579)
.+-|.||.+.-..+. .|+...+ ++.....++. .-.+...+..++..+..|.|+--|+..... ...+..
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e 230 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE 230 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence 899999999888887 4444311 2222222322 334455555666678899999988865432 112211
Q ss_pred -----CCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEec
Q 008058 158 -----STKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAV 219 (579)
Q Consensus 158 -----~~~~v~~l~~~p~g~~l~~~~------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~ 219 (579)
..+.-.-+++++..+.|++-- ..|.+||+.+++.+..+.. ..++.+|..+.+.+ .|++.+.
T Consensus 231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET
T ss_pred cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC
Confidence 012345578887665555421 2799999999999998873 34678999998766 5655544
Q ss_pred CCCeEEEEEcCCCccc
Q 008058 220 GERYIALWRTDGVKKQ 235 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~ 235 (579)
.++.+.+||..+++..
T Consensus 310 ~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEETTT--EE
T ss_pred CCCeEEEEeCcCCcEE
Confidence 6899999999998754
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0013 Score=66.48 Aligned_cols=157 Identities=12% Similarity=0.055 Sum_probs=101.1
Q ss_pred CCCCEEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---C--eEEEEEC
Q 008058 116 HPGGVSAISFATHGSCIYSAG---AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---G--QLKTFNC 186 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~---~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g--~i~vwd~ 186 (579)
-...+..-+|+|+++.++..+ .. ..++++|+.+++...... ..+.-...+|+|||+.++.+. | .|+++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345677788999998755442 22 469999999886555443 223334568999999998876 3 7889999
Q ss_pred CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE--EcCCCccccceeEEeeecCceeeEeEEecCCcccCCC
Q 008058 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 187 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.+++. ..+....+.-..-.|+|||++++..++..|.-.|| +.+..... ..+....... .-.++ |||
T Consensus 270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~----riT~~~~~~~--~p~~S-----pdG 337 (425)
T COG0823 270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT----RLTFSGGGNS--NPVWS-----PDG 337 (425)
T ss_pred CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee----EeeccCCCCc--CccCC-----CCC
Confidence 88763 33554444444678999999999988767765555 55544322 1222222221 34444 999
Q ss_pred cEEEEEEc-CCe--EEEEECCCce
Q 008058 265 LYVLAISE-TGV--CYIWYGQNIE 285 (579)
Q Consensus 265 ~~l~s~~~-dg~--i~iwd~~~~~ 285 (579)
++|+..+. +|. |.++|..++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 99988875 354 5566665554
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00049 Score=69.49 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=109.4
Q ss_pred eEEEEccCCCEEEEEeC---C-CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 9 ILTSFSPALDYFAICSG---D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+.-+|+|++..++..+. . ..+.++++.+++...... ..+......|+++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD-------------------------- 248 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD-------------------------- 248 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCC--------------------------
Confidence 44589999987776542 2 358889998887654443 2222223344444
Q ss_pred CCc-EEEEEECCCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecC
Q 008058 85 GSS-LLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 85 ~~~-~l~~~~~~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~ 158 (579)
+. ++++...+|. |+++|+.+++.. ++. .-.+.-+.-.|+|||++++..+. .| .|.++|+..+.. ..+...
T Consensus 249 -G~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~ 324 (425)
T COG0823 249 -GSKLAFSSSRDGSPDIYLMDLDGKNLP-RLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS 324 (425)
T ss_pred -CCEEEEEECCCCCccEEEEcCCCCcce-ecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence 44 4445555665 888888887744 332 22233346789999999776653 44 466677665543 333333
Q ss_pred CCCeeEEEEccCCCEEEEEC---Ce--EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058 159 TKGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~---g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
.+.-..-.|+|||++++..+ |. |.+.|+.++..++.+. +......-.|.|+++.++..+
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 33333778999999999876 44 7777776665444443 333344567888888877765
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.002 Score=67.24 Aligned_cols=193 Identities=16% Similarity=0.212 Sum_probs=121.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC------cee-
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLTG------SLL- 152 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~------~~~- 152 (579)
+..+++|+.+|.|.+++-.-.. +..+ ..+... |..+....+..+|++.+.|+ .+++||+..- .++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~~-~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQL-IRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CceEEEeeccccEEEeccccee-eehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 6789999999999988754322 1122 344444 45454444446788877665 4899998632 233
Q ss_pred --eEee--c--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC----CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058 153 --GKFR--A--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 153 --~~~~--~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
+.+. . ...++.+++++.+-+.+|+|- |.|..+.-+- +....-......+|+.+.+..+++.++... .
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence 1111 1 234789999999988888886 8888874321 111222233467999999998888622222 2
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
-..|.+|.+.... . ....+.+++..+.|..++ +....+++++ +..+.+|+.+.........
T Consensus 192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 4579999998543 2 234577888888998887 3333243333 3579999887555544443
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.86 E-value=0.011 Score=58.29 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=104.4
Q ss_pred CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---------C-C
Q 008058 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---------G-G 96 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---------~-g 96 (579)
..|++.|..+.+.+..+.-.. ...+++++-........ ....++++|+. . |
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-----------------~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~G 62 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-----------------NEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSG 62 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-----------------TEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-E
T ss_pred cEEEEEeCCCCeEEEEEECCC-----------------CceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCc
Confidence 357888888887776654211 12222333222211000 01577888875 2 8
Q ss_pred eEEEEEccCC-----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeec-CCCCeeEEEEcc
Q 008058 97 DVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA-STKGISCMAVSS 169 (579)
Q Consensus 97 ~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~~~v~~l~~~p 169 (579)
.|.++++... +..........++|++++-- +| +++.+ ..+.|++|++...+ ....-.. ....+.++...
T Consensus 63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~- 138 (321)
T PF03178_consen 63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF- 138 (321)
T ss_dssp EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence 8999999984 33322223457889999876 44 45444 35789999998777 4433221 22255555554
Q ss_pred CCCEEEEEC--CeEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 170 DGKMLATAA--GQLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 170 ~g~~l~~~~--g~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
++++++|+ ..+.++..+. .+.+..+. .....++++.|-++++.++.+ +.+|.+.++....
T Consensus 139 -~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~-D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 -KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG-DKDGNLFVLRYNP 203 (321)
T ss_dssp -TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-ETTSEEEEEEE-S
T ss_pred -ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-cCCCeEEEEEECC
Confidence 66888888 6777664432 33233332 234568888998776766665 4799999998864
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00016 Score=73.56 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=99.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-.-+++..++|++.|+.-|.+++|+...+.... ++.. + ....++..-.+.+ ..+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~---------------~--~~~~~~~~~vs~~--------e~l 90 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE---------------G--ATGITCVRSVSSV--------EYL 90 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhc-cccc---------------C--ccceEEEEEecch--------hHh
Confidence 334678889999999999999999987665332 2110 1 1112222222222 567
Q ss_pred EEEEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceeeEeecCC
Q 008058 89 LVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRAST 159 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~ 159 (579)
+++|+..|.|.++-+..+.. +......|...|++++|++++..+++|...|+|..-.+.+. ...+.+-...
T Consensus 91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 89999999999998876432 22223457889999999999999999999999998887662 1122233344
Q ss_pred CCeeEEEEccCCCEEEEECCeEEEEECCCC
Q 008058 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDH 189 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~ 189 (579)
..|-.+... ++.+|++..-.-.+++++.+
T Consensus 171 s~IVQlD~~-q~~LLVStl~r~~Lc~tE~e 199 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLTRCILCQTEAE 199 (726)
T ss_pred cceEEeecc-cceehHhhhhhhheeecchh
Confidence 567666665 34444444455556665543
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.80 E-value=5.7e-06 Score=82.69 Aligned_cols=197 Identities=12% Similarity=0.149 Sum_probs=125.8
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEcc-CCCEEEEEe----CCCc
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM 140 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~~----~dg~ 140 (579)
.+.|++|+-... ...+++|..+|.|-+-......-. +.+..+|..++++++|++ |.++|+.|- .|..
T Consensus 58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 455677765431 367899999999999888754332 455678889999999998 556666662 4567
Q ss_pred EEEEeCCCC--ceeeE--eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEec-CC
Q 008058 141 VCEIDPLTG--SLLGK--FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSD-NG 211 (579)
Q Consensus 141 v~iwd~~~~--~~~~~--~~~-~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~-~~ 211 (579)
+.|||+.++ .+..+ |.+ ......+++|..+.+++.+|. ..+.++|++.... ...+ .+..+..+...| .+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999876 22222 332 233567899998888888887 6899999984321 2222 234566778888 67
Q ss_pred CEEEEEecCCCeEEEEEc-CCCccccceeEEeeecCce----eeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECC
Q 008058 212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHPAV----FMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQ 282 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~ 282 (579)
.|+++. .|+.|.+||. +.-+.. ...+.+... .+..+.|++. ..|. +++. -..++|+.||+.
T Consensus 209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycPt---rtgl-la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCPT---RTGL-LAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEeccC---Ccch-hhhhccCcceEEEeccc
Confidence 787664 4999999994 332211 111112211 2344455421 2333 4444 446799999864
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.77 E-value=0.041 Score=52.75 Aligned_cols=245 Identities=16% Similarity=0.206 Sum_probs=130.3
Q ss_pred EEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccccc-cccccccccccccccccCccceEEeeeccccc
Q 008058 12 SFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 12 ~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
..||||+.+++++ ..-.|.+||..+-....++.-+.. ......+.. ... .+.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~------------~~~-ls~---- 104 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKN------------MFA-LSA---- 104 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GG------------GEE-E-T----
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccccc------------ceE-Ecc----
Confidence 6799999888653 233689999999988887753322 000000000 000 011
Q ss_pred ccccCCcEEEEEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeE---
Q 008058 81 KRKLGSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGK--- 154 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~--- 154 (579)
+++++++.... ..|.|-|+..++.+.++. ...+..+--+++ +.|.+-+.||.+.-..+. .|+..++
T Consensus 105 ----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~---~PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 105 ----DGKFLYVQNFTPATSVTVVDLAAKKVVGEID---TPGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp ----TSSEEEEEEESSSEEEEEEETTTTEEEEEEE---GTSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred ----CCcEEEEEccCCCCeEEEEECCCCceeeeec---CCCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence 15555554443 448888888888776663 234444444443 457788899999988887 5655433
Q ss_pred -eecCCCC-eeEEEEccCC-CEEEEEC-CeEEEEECCCCee--eEEeecC----------CCCEEEEEEecCCCEEEEEe
Q 008058 155 -FRASTKG-ISCMAVSSDG-KMLATAA-GQLKTFNCSDHKK--MQKFSGH----------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 155 -~~~~~~~-v~~l~~~p~g-~~l~~~~-g~i~vwd~~~~~~--~~~~~~h----------~~~v~~l~~~~~~~~l~s~s 218 (579)
|.....+ +..-++...+ .++...- |.|+--|+..... ...+.-- .+...-+++++....|+.--
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 2222222 2233444444 4554444 9999988876542 2222210 12233477877655554432
Q ss_pred c-------CCC--eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeec
Q 008058 219 V-------GER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR 288 (579)
Q Consensus 219 ~-------~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 288 (579)
. .|+ .|.++|+.+++.. ....+.++ +..+..+. .+..+|++.+ .++.+.+||..+|+.++
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv---~Ri~l~~~---~~Si~Vsq----d~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRV---ARIPLEHP---IDSIAVSQ----DDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEE---EEEEEEEE---ESEEEEES----SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEE---EEEeCCCc---cceEEEcc----CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 1 122 4777788777644 22233333 22333441 2334665554 58999999999999887
Q ss_pred ccC
Q 008058 289 NTK 291 (579)
Q Consensus 289 ~~~ 291 (579)
..+
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 654
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00066 Score=70.41 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=83.2
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE
Q 008058 121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~ 194 (579)
+-..|+|...+|+.++ ..|.|.||- .+|++-+... ..-.+++++|+|..-.|+.|- |.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3457889888887775 467888885 5676544332 223467899999877777776 8999999887776666
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 195 ~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
...|..+|..+.|+|+|..++++- .-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 678999999999999999999875 67899999876
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.0091 Score=59.80 Aligned_cols=216 Identities=14% Similarity=0.197 Sum_probs=112.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE-Ee-cc----------c---cccccccccc--ccccccc--------
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT-EF-AD----------I---ASTETTSLYG--NRLEREH-------- 63 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~-~~-~~----------~---~~~~~~~~~~--~~~~~~~-------- 63 (579)
..+.|+++..-||.|...|.|.||.+...+... .- .. + .....++.-. +.+..|.
T Consensus 5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~ 84 (395)
T PF08596_consen 5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA 84 (395)
T ss_dssp EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence 456899998899999999999999876443221 00 00 0 0000010000 0000000
Q ss_pred ccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEec-------CCCCCCEEEEEEcc-----CC--
Q 008058 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-------DCHPGGVSAISFAT-----HG-- 129 (579)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~-----~~-- 129 (579)
....+++++-. +-.++++|..+|.+.|.|++....+..-. ......|+++.|.- |+
T Consensus 85 ~~g~vtal~~S----------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 85 KQGPVTALKNS----------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp -S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCCcEeEEecC----------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 01223333321 26789999999999999998887765421 12345688888863 33
Q ss_pred -CEEEEEeCCCcEEEEeCC--C-Cce----eeEeecCCCCeeEEE-EccC---------------------CCEEEEEC-
Q 008058 130 -SCIYSAGADGMVCEIDPL--T-GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA- 178 (579)
Q Consensus 130 -~~l~s~~~dg~v~iwd~~--~-~~~----~~~~~~~~~~v~~l~-~~p~---------------------g~~l~~~~- 178 (579)
-.+++|...|.+.+|.+. . +.. ......+.++|..|. ++.+ ..++++++
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 358899999999999764 1 211 111223445555554 3211 12455555
Q ss_pred CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----cCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
..++++...+.+...+.....-....+.+- ..+..|++-. .+|.++++.+..-+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI 295 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence 899999998877655544232233444553 2455566555 7999999999987654
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0057 Score=58.86 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=116.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~ 160 (579)
+.++.+--..+.|.-|+..+++...-. +.+.+.++..-..+..|+++. . -+++++..++..+..+... ..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcC
Confidence 445566667778999999877553222 334445555444455566653 3 3677777666553332211 13
Q ss_pred CeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~-------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
..+.+.+.|+|.+.++.. |.++.+|. .+..++.+..+-..-+.|+||||++.|+.+-+..+.|..|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 567788899998777532 33444443 4666666666666678899999999888776556788888
Q ss_pred EcCC--CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-eEEEEECCCceeecccCC
Q 008058 228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~ 292 (579)
++.. +.....................+.. .+|.+-+++..+| .|.+|+.+ ++.+..+.-
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 8763 2111111112222233334445554 6777765554454 99999988 777765543
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.76 E-value=0.037 Score=58.11 Aligned_cols=199 Identities=11% Similarity=0.155 Sum_probs=116.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-.|..+|+.+..+............... .... ....+ +..+++++.++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~----~~~r--g~av~------------~~~v~v~t~dg 130 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCD----VVNR--GVALY------------DGKVFFGTLDA 130 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccc----cccc--cceEE------------CCEEEEEcCCC
Confidence 456777777889999999999998877532110000000000 0000 00001 45688899999
Q ss_pred eEEEEEccCCeEEEEecCCCCC---CEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeecCCC-------
Q 008058 97 DVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTK------- 160 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~------- 160 (579)
.+.-.|..+|+.+++....... .+++--.--++ .++.+. .+|.|+.+|..+|+.+..+..-..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 9999999999998876432111 12111001134 455543 268999999999988766443111
Q ss_pred ------------------------Ce-eEEEEccCCCEEEEEC------------------CeEEEEECCCCeeeEEeec
Q 008058 161 ------------------------GI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 161 ------------------------~v-~~l~~~p~g~~l~~~~------------------g~i~vwd~~~~~~~~~~~~ 197 (579)
.+ ..+++.|+..+++.+. .+|.-.|++||+..-.++.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 11 1346666666666543 1577778899988777653
Q ss_pred CCCCE---------EEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 198 HPGAV---------RFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 198 h~~~v---------~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
....+ .-+.+..+|+ .++.+ ..+|.+++.|-.+++..
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-DRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEe-CCCceEEEEECCCCcee
Confidence 22211 1223334665 44455 48999999999988753
No 352
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.71 E-value=8.6e-06 Score=67.90 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=60.7
Q ss_pred hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHh-cccccCCCChhHHHHHHHHHHH
Q 008058 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH-GHHLLSQESLTPMLSSLYKVRK 560 (579)
Q Consensus 492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h-~~~l~s~~~l~~~l~~l~~~~~ 560 (579)
..|+.+|..|+.....+||+|+. .|+++++.+...+..+.+||+.| ...|...|++...|+.|----+
T Consensus 49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYte 117 (141)
T PF08625_consen 49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTE 117 (141)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHH
Confidence 57999999999999999999998 89999999999999999999955 5567899999988888865554
No 353
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.71 E-value=0.023 Score=55.51 Aligned_cols=194 Identities=11% Similarity=0.114 Sum_probs=90.9
Q ss_pred EEccCCCEEEEEeC-CC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 12 ~fs~dg~~las~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+|.+||+.|+.++. || .+.+.|+.+++..+--.+..........+++ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~ 94 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA 94 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence 67889987776664 55 5666688888765533221111111111211 444
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEe----------------------CCCcEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAG----------------------ADGMVCEI 144 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~----------------------~dg~v~iw 144 (579)
++....+..|.-.|+.+.+.. .+......-+-...| +.|+..++-.- ..+.|.-.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTTEEEEEETTT--EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 555556678888888887653 222233444433444 34555543321 11346667
Q ss_pred eCCCCceeeEeecCCCCeeEEEEccCCCEEE-EEC-C---e--EEEEECCC-CeeeEEeecCC--CCEEEEEEecCCCEE
Q 008058 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLA-TAA-G---Q--LKTFNCSD-HKKMQKFSGHP--GAVRFMTFSDNGKYV 214 (579)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~-~~~-g---~--i~vwd~~~-~~~~~~~~~h~--~~v~~l~~~~~~~~l 214 (579)
|+.+|+....+. ....+..+.|+|....++ -|- | . -+||-+++ +...+.+..|. ..+..=-|.|||..+
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 888887655555 456788999999655444 443 2 2 25665543 33344443333 224445789999877
Q ss_pred EEEec----CCCeEEEEEcCCCcc
Q 008058 215 LSSAV----GERYIALWRTDGVKK 234 (579)
Q Consensus 215 ~s~s~----~d~~i~vwd~~~~~~ 234 (579)
..-+. .+..|.-+|+.+++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--E
T ss_pred EEEeecCCCCceEEEeeCCCCCCc
Confidence 65432 244677778877653
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.71 E-value=0.0031 Score=67.61 Aligned_cols=142 Identities=16% Similarity=0.307 Sum_probs=97.5
Q ss_pred CcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCc--eeeE-e-
Q 008058 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-F- 155 (579)
Q Consensus 86 ~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~--~~~~-~- 155 (579)
..+|+.-. ....|+-.|+.+|+++.........+|.+++-.. +...-+.|-.+..+..||++-.. .+.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 34444443 3466999999999998777544444466654321 13345677788899999998532 3321 1
Q ss_pred -ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 156 -RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 156 -~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
.......+|++-+.+|.+.+... |.|++||--..+....|++-..||.+|..+.||+++++++ +..+.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 12344788998888875554444 9999999433333344677789999999999999999886 678888886
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.70 E-value=0.0055 Score=60.33 Aligned_cols=176 Identities=10% Similarity=0.107 Sum_probs=101.7
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEE---EccC----CCEEEEEeC----------CCcEEEEeCCCC----ceeeE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAIS---FATH----GSCIYSAGA----------DGMVCEIDPLTG----SLLGK 154 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~---~~~~----~~~l~s~~~----------dg~v~iwd~~~~----~~~~~ 154 (579)
+.|++.|..+.+.+..+.-.....+.+++ |..+ ..+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888877766554333334455443 4332 456776642 288999999874 12222
Q ss_pred e--ecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCe-eeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 155 F--RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 155 ~--~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~-~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
+ ....++|++++-- +|.++++.++.|.+|++...+ ....- ......+.++... +.+++.+. .-+.+.++..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEEEEEEE
Confidence 1 2246789999877 566666666999999998877 43322 2223356666655 55777765 46667777554
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
..... ...+.. +.....+..+.+- +++..+++++.+|.+.++..+
T Consensus 158 ~~~~~-l~~va~-d~~~~~v~~~~~l-----~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNK-LILVAR-DYQPRWVTAAEFL-----VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE--EEEEEE-ESS-BEEEEEEEE------SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCE-EEEEEe-cCCCccEEEEEEe-----cCCcEEEEEcCCCeEEEEEEC
Confidence 42211 112222 2333333344443 455699999999999999764
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.018 Score=58.02 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=130.3
Q ss_pred EEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+++++++.. +++...++.|.+.|..+........... . -..+.+.+. +..+
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~------------------P~~~~~~~~---------~~~v 130 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-G------------------PVGLAVDPD---------GKYV 130 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-C------------------CceEEECCC---------CCEE
Confidence 477888874 4444456899999977777666543211 1 112333332 4445
Q ss_pred EEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-E---eecCCCC
Q 008058 90 VLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K---FRASTKG 161 (579)
Q Consensus 90 ~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~-~---~~~~~~~ 161 (579)
+++.. ++.+.+.|..++........+. .+ ..+++.|+|..++.+. .++.|.+.|.......+ . .......
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~ 208 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG 208 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC
Confidence 55554 6789999999999887754443 34 9999999999777665 78899999976555443 1 0112234
Q ss_pred eeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 162 ISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
...+.++|+|..+.... +.+...|..++..... ...-......+.++|+|.++.+.-...+.+.+-|..+..
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 57789999999777665 3888899888876654 221111456789999999988875556788888877765
No 357
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00029 Score=66.91 Aligned_cols=93 Identities=9% Similarity=0.084 Sum_probs=77.1
Q ss_pred EEEEeCCCCceeeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 217 (579)
|++.+..+.+...-+..+...|..++|+|..+ ++..++ +.|+|.|+++...+..+..| ..+++++|.-|...++.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666666666666777999999999887 555666 79999999999999888877 789999999988888888
Q ss_pred ecCCCeEEEEEcCCCcc
Q 008058 218 AVGERYIALWRTDGVKK 234 (579)
Q Consensus 218 s~~d~~i~vwd~~~~~~ 234 (579)
|...|.|.+||++..+.
T Consensus 254 Gl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCceEEEEEccCCCc
Confidence 88899999999998763
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.52 E-value=0.073 Score=49.49 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=106.1
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
.+.+.|.+.+ +.++++....+.|..++. +|+.+.++.-.-.+..-++++..++.++++.-.++.+.++++.
T Consensus 24 ~SGLTy~pd~--------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 24 LSGLTYNPDT--------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ccccEEcCCC--------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 5667777654 667777888888988886 4777766643334678899998888777766678999999884
Q ss_pred CCc------eeeEee-----cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---CeeeE--Ee------ecCCCCEE
Q 008058 148 TGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQ--KF------SGHPGAVR 203 (579)
Q Consensus 148 ~~~------~~~~~~-----~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~---~~~~~--~~------~~h~~~v~ 203 (579)
... ....+. .++..+-.++|+|.++.|+.+- .-..+|.+.. ...+. .. ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112222 2344789999999877777765 3344444432 11111 11 12345688
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec-------CceeeEeEEecCCcccCCCcEEEEEEcCCeE
Q 008058 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 276 (579)
++.++|....|+.-+..++.|..+| ..++.. ....+.. .-.....+++. ++|. |...++-+..
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~---~~~~L~~g~~gl~~~~~QpEGIa~d-----~~G~-LYIvsEpNlf 244 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVV---SSLSLDRGFHGLSKDIPQPEGIAFD-----PDGN-LYIVSEPNLF 244 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EE---EEEE-STTGGG-SS---SEEEEEE------TT---EEEEETTTEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE---EEEEeCCcccCcccccCCccEEEEC-----CCCC-EEEEcCCceE
Confidence 9999998766666666888999999 444432 1222222 11234556676 7774 4455566666
Q ss_pred EEE
Q 008058 277 YIW 279 (579)
Q Consensus 277 ~iw 279 (579)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.066 Score=51.65 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=90.1
Q ss_pred CCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008058 118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~v 183 (579)
...+++...|+|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.++.+. +.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 45678889999986554433 134566665 4666666665555668899999999888887 78888
Q ss_pred EECCC--C----e-eeEEeecCCCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccceeEEeeecCceeeEeEEe
Q 008058 184 FNCSD--H----K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (579)
Q Consensus 184 wd~~~--~----~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (579)
|++.. + + ....+....+..-.++...+|.+.+++. .+| .|.+|+.. ++.. ....-+....++.+|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F 262 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF 262 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence 87752 1 1 1222233456667788888888775443 444 89999988 5533 333444355566666
Q ss_pred cCCcccCCCcEEEEEEc
Q 008058 256 DNGGVDDAGLYVLAISE 272 (579)
Q Consensus 256 ~~~~~~~~~~~l~s~~~ 272 (579)
-. ++.+.|.+.+.
T Consensus 263 gG----~~~~~L~iTs~ 275 (307)
T COG3386 263 GG----PDLNTLYITSA 275 (307)
T ss_pred eC----CCcCEEEEEec
Confidence 41 44555555444
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.00076 Score=68.83 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=85.5
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-
Q 008058 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK- 191 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~- 191 (579)
|...|.--+++..+++++.|+.-|.+++|+-..++... +..+..+.+..+.++++..++|.|+ |.|.++.+....+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666677789999999999999999965554322 2223445667778888888888887 8999998876432
Q ss_pred ----eEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 192 ----MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 192 ----~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
+..+ ..|...|+++.|++++..+++|- ..|+|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence 1111 24778899999999999999875 688888888877
No 361
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.50 E-value=0.00048 Score=63.28 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=80.0
Q ss_pred chhhhhhccce---------eecccCChhhHHHHhhccC------hhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 008058 473 SALEATLFNGI---------DFETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN 537 (579)
Q Consensus 473 ~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp------~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~ 537 (579)
..+...|..+- +.++..++..|+..|+.|. ...+..||+++..++.++. ..++++.|+...|+.
T Consensus 111 s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~-dfElvQa~l~vFLk~ 189 (237)
T PF04192_consen 111 SEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRR-DFELVQAYLSVFLKV 189 (237)
T ss_pred CHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 34555555543 4667789999999999999 6778889999998887665 599999999999999
Q ss_pred hcccccCCCC---hhHHHHHHHHHHHH---hh-----hhhhhhhce
Q 008058 538 HGHHLLSQES---LTPMLSSLYKVRKK---KL-----FASAFTCFI 572 (579)
Q Consensus 538 h~~~l~s~~~---l~~~l~~l~~~~~~---r~-----~~~~~~~~~ 572 (579)
|+..|+..++ |...|..|.+..++ |+ |++-+.+|+
T Consensus 190 Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl 235 (237)
T PF04192_consen 190 HGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFL 235 (237)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 9999999999 99999999988874 44 555444444
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.47 E-value=0.013 Score=59.65 Aligned_cols=131 Identities=11% Similarity=0.187 Sum_probs=76.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
++++++ +.+|.-.+|.....+.. ..+.-..++|.+.++ +++-...++|.++.--+.+....++.. ..+..|
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I 114 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI 114 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred CCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence 666666 88888888885443332 123456788988554 666666888999742223332334322 223333
Q ss_pred EEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 166 ~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
-. |.+|...+ +.|.+||+.+++.++.+... +|..+.|+++|.+++..+ +..+.+++....
T Consensus 115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~~ 175 (443)
T PF04053_consen 115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNLE 175 (443)
T ss_dssp E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-HH
T ss_pred Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecch
Confidence 32 88888777 77999999999999998733 489999999999999886 457888775543
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.0085 Score=47.13 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=61.2
Q ss_pred EccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 13 FSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 13 fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
|..|| +.|+.|+.|..||||+ ....+.+++.... ++++.-.. ...++.
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~-------------------v~~L~~~~----------~~~F~Y 58 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDK-------------------VTSLCSLG----------GGRFAY 58 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccc-------------------eEEEEEcC----------CCEEEE
Confidence 55565 5899999999999998 3466666653221 12222111 566999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEE
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVC 142 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~~-~l~s~~~dg~v~ 142 (579)
+..+|+|-+|+- ...+++....| .++++.+.. ||. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999999999976 34445554333 356665543 332 488888888774
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.43 E-value=0.092 Score=48.65 Aligned_cols=175 Identities=11% Similarity=0.104 Sum_probs=111.3
Q ss_pred EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|.++|.++-+.+.-| .|+.+|..+|+......-.. ..++..++.+ ++.+.
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgEGit~~-------------~d~l~ 103 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------RYFGEGITIL-------------GDKLY 103 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------T--EEEEEEE-------------TTEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------cccceeEEEE-------------CCEEE
Confidence 4556776666666544 78999999998776554211 1111111110 14556
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (579)
...-.++...+||..+-+.+.++.- .+.=++++ .||+.|+.......++.+|..+.+..+.+.... ..++-
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 6677789999999999888777642 33446776 477788888788899999999888777665432 25666
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec------------C---CCCEEEEEEecCCCEEEEEe
Q 008058 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~------------h---~~~v~~l~~~~~~~~l~s~s 218 (579)
+.+- +|.+.|-.= ..|...|..+|+.+..+.- + ..-.+.|++.|....|+.+|
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7776 666555543 7899999999988765520 1 24478999999887777766
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0006 Score=68.70 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=73.6
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI 144 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~dg~v~iw 144 (579)
.....+.|.|. -.++|+++.+|.|.++... .+.++.+. -|...++ +++|.|||+.++.|-.||+|++.
T Consensus 21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 34456778775 6789999999999999988 66666663 3556666 99999999999999999999999
Q ss_pred eCCCCceeeEeec-CCCCeeEEEEcc
Q 008058 145 DPLTGSLLGKFRA-STKGISCMAVSS 169 (579)
Q Consensus 145 d~~~~~~~~~~~~-~~~~v~~l~~~p 169 (579)
|..++..+..+.. ....|.++-|+|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999987776322 344778888863
No 366
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.39 E-value=0.022 Score=50.62 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=119.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCC--CceeeEeec---
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLT--GSLLGKFRA--- 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~dg~v~iwd~~~--~~~~~~~~~--- 157 (579)
+.++.+--..|.|.-||..+++......++. ++.++.+--.| .+.+.++..-.|--||... -...+++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 5677777778888889999887654443332 24444443233 2344444444555677432 222333111
Q ss_pred --CCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 158 --~~~~v~~l~~~p~g~~l~~~~-----------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
.....+.-..+|+|++++..- |.++.|-.. ..+..+...-+--+.++|+.+.+.+...-+-+-.|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 123556667899999955332 345555432 12222223334446789998888777665567788
Q ss_pred EEEE--cCCCccccceeEEeeec----CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee
Q 008058 225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (579)
Q Consensus 225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (579)
.-|| ..++.......++.+.. ........+.. .+|...++.-..|+|..+|..+|+.+..++-....++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 7788 66665544445555443 22223334444 5777777777788999999999999887664444333
No 367
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.38 E-value=0.15 Score=50.88 Aligned_cols=163 Identities=11% Similarity=0.125 Sum_probs=90.6
Q ss_pred EEEEEccCCeEEE-Eec---CCCCCCEEEEEEccCCCEEEEE--eCCC---cEEEEeCCCCceeeEeecC-CC---CeeE
Q 008058 98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC 164 (579)
Q Consensus 98 i~iwd~~~~~~~~-~~~---~~h~~~V~~l~~~~~~~~l~s~--~~dg---~v~iwd~~~~~~~~~~~~~-~~---~v~~ 164 (579)
+.++|+.+++... ... .....-+..+.|.++++.|+.. +.+. .+.++|..++.....+... .. ....
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 5667777766421 111 1234468899999999844443 3332 4667788777554333322 22 2235
Q ss_pred EEEc-cCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEE-EEEecCCCEEEEEecCC----CeEEEEEcC-CC
Q 008058 165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV 232 (579)
Q Consensus 165 l~~~-p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~~d----~~i~vwd~~-~~ 232 (579)
..+. +++..++..+ ..|++++...+. ...+....-.|.. +.++++++.++..+..+ ..++.-++. .+
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 5554 7776666544 488888987776 4466656677865 67888887766555332 355555666 43
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
... .+...........|+ |+|++++-...
T Consensus 319 ~~~------~LT~~~~~~~~~~~S-----pdg~y~v~~~s 347 (353)
T PF00930_consen 319 EPK------CLTCEDGDHYSASFS-----PDGKYYVDTYS 347 (353)
T ss_dssp EEE------ESSTTSSTTEEEEE------TTSSEEEEEEE
T ss_pred CeE------eccCCCCCceEEEEC-----CCCCEEEEEEc
Confidence 322 222222222456666 89888776543
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.36 E-value=0.039 Score=55.31 Aligned_cols=211 Identities=16% Similarity=0.137 Sum_probs=105.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++| .+++.|.=| ++|.|..+|.+.|.|++....+..-.-.. .+........++++.|..-..+.
T Consensus 85 ~~g~v--tal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------~~~~~~~~~~vt~ieF~vm~~~~- 150 (395)
T PF08596_consen 85 KQGPV--TALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------SFLSKSSSSYVTSIEFSVMTLGG- 150 (395)
T ss_dssp -S-SE--EEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG------------T-SS----EEEEEEEEEE-TT-
T ss_pred cCCcE--eEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------cccccccccCeeEEEEEEEecCC-
Confidence 46888 555887555 99999999999999998877776522111 00112334566777776422110
Q ss_pred cccCCcEEEEEECCCeEEEEEccC---CeEEEE---ecCCCCCCEEEEE-EccC-C-------------------CEEEE
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSA---GQLKWR---LSDCHPGGVSAIS-FATH-G-------------------SCIYS 134 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~---~~~~~~---~~~~h~~~V~~l~-~~~~-~-------------------~~l~s 134 (579)
.....-.+++|+..|.+.+|.+.- +..... ....+.++|..+. |+.+ | +.++.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 000145789999999999998752 222111 1124566776665 4322 1 12334
Q ss_pred EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc-----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----CCEE
Q 008058 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS-----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GAVR 203 (579)
Q Consensus 135 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-----p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~----~~v~ 203 (579)
...+..++++.+.+.+..++..........+.+- ..+..|++-. |.|++|.+..-+.+..+.-+. ..+.
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 4457779999998887766644222233344442 2333444332 999999999888887776432 2234
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEE
Q 008058 204 FMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
...++++|..++-.+ ...+.++.
T Consensus 311 ~ssis~~Gdi~~~~g--psE~~l~s 333 (395)
T PF08596_consen 311 SSSISRNGDIFYWTG--PSEIQLFS 333 (395)
T ss_dssp T-EE-TTS-EEEE-S--SSEEEEEE
T ss_pred ccEECCCCCEEEEeC--cccEEEEE
Confidence 456677777665554 33444443
No 369
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.36 E-value=0.13 Score=47.96 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=96.9
Q ss_pred EEEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-++|+|+.+. +|+....+.|...+. +|+.+..+.-.. ..+.-.+++.. +..
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-----------------~~D~EgI~y~g----------~~~ 77 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-----------------FGDYEGITYLG----------NGR 77 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------SSEEEEEE-S----------TTE
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-----------------CCCceeEEEEC----------CCE
Confidence 3499998664 445556778877786 588877765221 11222333322 344
Q ss_pred EEEEE-CCCeEEEEEccCCe------EEEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeeE
Q 008058 89 LVLGT-GGGDVLALAVSAGQ------LKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---GSLLGK 154 (579)
Q Consensus 89 l~~~~-~~g~i~iwd~~~~~------~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~---~~~~~~ 154 (579)
+++.. .++.+.++++.... ...++ ...++..+-+++|+|.++.|+.+-...-..+|.+.. ...+..
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 55555 47888888883321 01111 123556799999999888888877666666665542 111111
Q ss_pred --e---e---cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCC---------CCEEEEEEecCCCEE
Q 008058 155 --F---R---ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYV 214 (579)
Q Consensus 155 --~---~---~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~l 214 (579)
. . .....+.+++++|.. ++++... ..|..+| .+|+.+..+.-.. ...-.|+|.++|+..
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1 1 123367899999964 5555555 7899999 6777665553211 346789999999765
Q ss_pred EEEecCCCeEEEE
Q 008058 215 LSSAVGERYIALW 227 (579)
Q Consensus 215 ~s~s~~d~~i~vw 227 (579)
++ + +-+..+++
T Consensus 237 Iv-s-EpNlfy~f 247 (248)
T PF06977_consen 237 IV-S-EPNLFYRF 247 (248)
T ss_dssp EE-E-TTTEEEEE
T ss_pred EE-c-CCceEEEe
Confidence 55 4 55555544
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.33 E-value=0.053 Score=57.45 Aligned_cols=124 Identities=12% Similarity=0.192 Sum_probs=70.8
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
.|.+++.. +.. ..+..+. ..+.-.|+|||+.+++.... +.+.+.++..+.... ...+.|..
T Consensus 380 ~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Iss 452 (591)
T PRK13616 380 SLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISE 452 (591)
T ss_pred EEEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCe
Confidence 35555542 222 2333333 37888999998887777532 233333443333222 23457999
Q ss_pred EEEccCCCEEEEEC-CeEEE---EECCCCee-e---EEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 165 MAVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 165 l~~~p~g~~l~~~~-g~i~v---wd~~~~~~-~---~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
+.|+|||..++... |.|++ -....|.. + ..+. +-...+.++.|.+++..++. . .++.-.+|.+
T Consensus 453 l~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~-~~~~~~v~~v 524 (591)
T PRK13616 453 LQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG-R-SDPEHPVWYV 524 (591)
T ss_pred EEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEE-e-cCCCCceEEE
Confidence 99999999888765 77777 44344431 1 1122 22334688999999986544 3 2333344543
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0032 Score=67.50 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=74.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE-
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC- 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~- 164 (579)
+..+++|+..|.|...|+..+-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 5568999999999999887652211111234579999999999999999999999999999999998888777665444
Q ss_pred --EEEccCCCEEEEEC--CeEEEEEC
Q 008058 165 --MAVSSDGKMLATAA--GQLKTFNC 186 (579)
Q Consensus 165 --l~~~p~g~~l~~~~--g~i~vwd~ 186 (579)
+.+..++..+++++ |. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44555667788887 44 5544
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.19 Score=51.03 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=57.1
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCC
Q 008058 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA 201 (579)
Q Consensus 125 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-~~~ 201 (579)
++.+....+....++.+.+.+-...+. +. ..+++..|++||+|+++|.-. |.+.+.+..-.+.+..+... ...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 344444444444555555444222211 22 235899999999999998766 88888877666666666433 345
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 202 VRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 202 v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
...|.|.-+...++. ....+.+..
T Consensus 262 p~~~~WCG~dav~l~---~~~~l~lvg 285 (410)
T PF04841_consen 262 PKQMAWCGNDAVVLS---WEDELLLVG 285 (410)
T ss_pred CcEEEEECCCcEEEE---eCCEEEEEC
Confidence 667777765433322 234455554
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.21 E-value=0.33 Score=49.72 Aligned_cols=200 Identities=14% Similarity=0.139 Sum_probs=109.5
Q ss_pred cceEEeeecccccccccCCcEEEEE-ECCCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---
Q 008058 68 YTCMKWLSVDRKKKRKLGSSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--- 139 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~-~~~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--- 139 (579)
...+.+...+|+ +++++.+ +.+|. ++++|+.+|+.+...... ..-..+.|.++++.|+....+.
T Consensus 123 ~~~~~~~~~Spd------g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 123 YVSLGGFSVSPD------GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp -EEEEEEEETTT------SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eEEeeeeeECCC------CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 334434444444 6666655 45555 999999999876543221 1123499999988877665333
Q ss_pred --------cEEEEeCCCCce--eeEeecCCCC--eeEEEEccCCCEEEEEC------CeEEEEECCCC----eeeEEeec
Q 008058 140 --------MVCEIDPLTGSL--LGKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSG 197 (579)
Q Consensus 140 --------~v~iwd~~~~~~--~~~~~~~~~~--v~~l~~~p~g~~l~~~~------g~i~vwd~~~~----~~~~~~~~ 197 (579)
.|+.|.+.+... ...|...... ...+..++|+++++... ..+++.|+..+ .....+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 378888876643 2445544433 56888999999988654 25888888874 23334443
Q ss_pred CCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEeeecCc-eeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 198 HPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 198 h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
+...+....-+..+.+++.+.. ..+.|...++..........+ ...+.. ..+..+... .+.+++....++
T Consensus 275 ~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~-l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 275 REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV-LIPEDEDVSLEDVSLF------KDYLVLSYRENG 347 (414)
T ss_dssp SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE-EE--SSSEEEEEEEEE------TTEEEEEEEETT
T ss_pred CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE-EcCCCCceeEEEEEEE------CCEEEEEEEECC
Confidence 4444443333334444444321 235677777777653211112 222322 344444332 345555555566
Q ss_pred --eEEEEECC
Q 008058 275 --VCYIWYGQ 282 (579)
Q Consensus 275 --~i~iwd~~ 282 (579)
.|++|++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 68888888
No 374
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.21 E-value=0.12 Score=56.27 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=116.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-------CEEEEEEcc----------------CCCEEEEEeCCCcEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC 142 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-------~V~~l~~~~----------------~~~~l~s~~~dg~v~ 142 (579)
+..+++++.++.|.-.|..+|+.++++...... ..+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 678999999999999999999999887432111 122333321 344788888999999
Q ss_pred EEeCCCCceeeEeecCCCCe-------------eEEEEcc--CCCEEEEE------------CCeEEEEECCCCeeeEEe
Q 008058 143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS--DGKMLATA------------AGQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~~p--~g~~l~~~------------~g~i~vwd~~~~~~~~~~ 195 (579)
-.|.++|+....|.. .+.| ..+.-.| .+..+++| +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877642 1111 0111122 12344444 267999999999988776
Q ss_pred ecC---------CC--------CE-EEEEEecCCCEEEEEec-----------------CCCeEEEEEcCCCccccceeE
Q 008058 196 SGH---------PG--------AV-RFMTFSDNGKYVLSSAV-----------------GERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 196 ~~h---------~~--------~v-~~l~~~~~~~~l~s~s~-----------------~d~~i~vwd~~~~~~~~~~~~ 240 (579)
..- .+ .+ ..+++.+....++.... ..+.|.-.|.++++.. -.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W~ 429 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---WV 429 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---EE
Confidence 411 00 01 22344444333333210 1234556666666543 22
Q ss_pred EeeecCcee-------eEeEEecCCcccCCCc---EEEEEEcCCeEEEEECCCceeecccC
Q 008058 241 LAMEHPAVF-------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 241 ~~~~~~~~~-------~~~~~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
+...|++.. ...+.+. ..+|+ .++.++.+|.++++|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 222222110 1111121 02553 78999999999999999999886544
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.17 E-value=0.083 Score=52.90 Aligned_cols=75 Identities=11% Similarity=0.259 Sum_probs=50.8
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecC-----------------CCEEEEEecC
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDN-----------------GKYVLSSAVG 220 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~-----------------~~~l~s~s~~ 220 (579)
.+.+++.+|++++.++.+ |.|.++|+.++..++.++|..+. +.-+..... ..+|+.=.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 567889999999998888 99999999999888888776543 111111111 1234433335
Q ss_pred CCeEEEEEcCCCccc
Q 008058 221 ERYIALWRTDGVKKQ 235 (579)
Q Consensus 221 d~~i~vwd~~~~~~~ 235 (579)
-|.|.||+++.+...
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 778888888887643
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.17 E-value=0.3 Score=48.40 Aligned_cols=139 Identities=11% Similarity=0.010 Sum_probs=76.5
Q ss_pred eEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEe--------------------CCCcEEEEeCCCCceeeE
Q 008058 97 DVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAG--------------------ADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~--------------------~dg~v~iwd~~~~~~~~~ 154 (579)
.+.++|-.+.+...+..... ..--+++-|.|..+.++|.. ...++.+||+.+.+.+++
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 38888888777765553322 23456788888888888762 235799999999999999
Q ss_pred eecCCC--CeeEEEEc--cCCCEEEEEC---CeEEEEEC-CCCe----eeEEeecC-----------------CCCEEEE
Q 008058 155 FRASTK--GISCMAVS--SDGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH-----------------PGAVRFM 205 (579)
Q Consensus 155 ~~~~~~--~v~~l~~~--p~g~~l~~~~---g~i~vwd~-~~~~----~~~~~~~h-----------------~~~v~~l 205 (579)
+.-... .+..+.|. |+..+-+++. ++|..|-- +.++ .+.++..- ..-|+.|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 875443 35566665 4455555544 56666644 3332 22222211 2457899
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.+|.|.++|..++-.+|.|+.||+......
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 999999999998878999999999887644
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.018 Score=52.80 Aligned_cols=125 Identities=18% Similarity=0.342 Sum_probs=84.0
Q ss_pred cEEEEEECCCe-EEEEEccCCeEEEEec-------CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC-cee
Q 008058 87 SLLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTG-SLL 152 (579)
Q Consensus 87 ~~l~~~~~~g~-i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~-~~~ 152 (579)
.-++.+-.-|+ ..++|....+....+. .+|. .|||||.+|+..-.| |.|-+||.+.+ +.+
T Consensus 81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv 154 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV 154 (366)
T ss_pred ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence 34555655566 6778887776543331 2343 699999999887443 78999998754 556
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEECCeEEE--------------------EECCCCeeeEE--ee--cCCCCEEEEEEe
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAAGQLKT--------------------FNCSDHKKMQK--FS--GHPGAVRFMTFS 208 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~v--------------------wd~~~~~~~~~--~~--~h~~~v~~l~~~ 208 (579)
..|..|.-....+.+.+||+.++.+.|-|.. .|..+|+.+.+ +. -+.-.|..++..
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 6788888888999999999999998754433 34344444332 22 234557778888
Q ss_pred cCCCEEEEE
Q 008058 209 DNGKYVLSS 217 (579)
Q Consensus 209 ~~~~~l~s~ 217 (579)
+||+.++.+
T Consensus 235 ~dgtvwfgc 243 (366)
T COG3490 235 RDGTVWFGC 243 (366)
T ss_pred CCCcEEEEE
Confidence 888765544
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0015 Score=40.27 Aligned_cols=39 Identities=33% Similarity=0.693 Sum_probs=33.6
Q ss_pred CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
++++..+..|...|.++.|++++..+++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 356677788999999999999998888887 799999996
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.38 Score=48.90 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=28.0
Q ss_pred CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 199 ~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.+++..|++||+|++++.-. .+|.+.+.+..-.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSE 249 (410)
T ss_pred CCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccc
Confidence 46899999999999998887 68998888765543
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0099 Score=59.02 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=98.7
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058 16 ALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 16 dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
+.++|+ ++.....++=.|++.|+.+.+++.+.. ++...+.++..-..+. ...=++|-.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~--------------------~e~TlvGLs 402 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT--------------------SEQTLVGLS 402 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc--------------------ccccEEeec
Confidence 444444 445555677789999999999886665 4444454442111111 223478888
Q ss_pred CCeEEEEEccCCeE-EEEecCCCC----CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEc
Q 008058 95 GGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVS 168 (579)
Q Consensus 95 ~g~i~iwd~~~~~~-~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~ 168 (579)
+..|.-||++-... +....++|. ..-.|++-..+| +++.||.+|.|++||- .+...+ .+.+-..+|..+..+
T Consensus 403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred CCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEee
Confidence 99999999874322 111112232 234566655555 7999999999999996 555444 477778899999999
Q ss_pred cCCCEEEEEC-CeEEEEECC
Q 008058 169 SDGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 169 p~g~~l~~~~-g~i~vwd~~ 187 (579)
.+|+++++.+ ..+.+.++.
T Consensus 481 adGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccCcEEEEecccEEEEEEEe
Confidence 9999998887 677776653
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.13 Score=47.42 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=106.1
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeC------------------CCcE
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGA------------------DGMV 141 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~------------------dg~v 141 (579)
+.+|+..-+| |.|-+||...+-. +.++ ..|.-....+.+.+||+.++.+.. .-.+
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl 203 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL 203 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence 6666665544 4599999985532 3333 457777889999999999887632 0123
Q ss_pred EEEeCCCCceeeEe--e--cCCCCeeEEEEccCCCEEEEEC--Ce-----EEEEECCCCeeeEEee-------cCCCCEE
Q 008058 142 CEIDPLTGSLLGKF--R--ASTKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVR 203 (579)
Q Consensus 142 ~iwd~~~~~~~~~~--~--~~~~~v~~l~~~p~g~~l~~~~--g~-----i~vwd~~~~~~~~~~~-------~h~~~v~ 203 (579)
.+.|..+|..+.+. . -+.-.|..++..+||+..+.+- |. -.+=-...++.+.-+. .....|-
T Consensus 204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 44454556555442 2 2334788899999988777654 21 1111112233333221 2234577
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
+|+.+.+...++.++-..+...+||..++...+ . . ....+.-.. +.+.-+++.+.+|.+.++.
T Consensus 284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~-----~--a--~l~daaGva-----~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVS-----E--A--ALPDAAGVA-----AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred heeecccCCeEEEecCCCCeEEEEEcCCCcEEe-----c--c--cccccccce-----eccCceEEecCCceEEecc
Confidence 888887666766666556678999999987431 1 1 111111111 3445566777789988884
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.052 Score=57.61 Aligned_cols=182 Identities=7% Similarity=-0.011 Sum_probs=91.4
Q ss_pred CcEEEEEECC------CeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 008058 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~ 152 (579)
+.+.++|+.+ ..+..||+.++... ....-.. .....+. -+|+..+.||.++ ++..||..+.+-.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 5566666643 34888999887653 1111111 1112222 2677777777654 4888998765322
Q ss_pred e--EeecCCCCeeEEEEccCCCEEEEEC--C-----------------------eEEEEECCCCeee--EEeecCCCCEE
Q 008058 153 G--KFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKKM--QKFSGHPGAVR 203 (579)
Q Consensus 153 ~--~~~~~~~~v~~l~~~p~g~~l~~~~--g-----------------------~i~vwd~~~~~~~--~~~~~h~~~v~ 203 (579)
. .+.........+. -+|++.+.|+ + .+..||..+.+-. ..+...... .
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~ 457 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-P 457 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-C
Confidence 1 1111111111222 2677777776 1 3677887766432 222111111 1
Q ss_pred EEEEecCCCEEEEEecCC-----CeEEEEEcCC-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC--e
Q 008058 204 FMTFSDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--V 275 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~ 275 (579)
+++ .-+++..+.||..+ ..+..||..+ .+-. .+..+..+-.....+.+ +|+..++|+.+| .
T Consensus 458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~~-------~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---LITTTESRLSALHTILH-------DNTIMMLHCYESYML 526 (557)
T ss_pred cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCee---EccccCcccccceeEEE-------CCEEEEEeeecceee
Confidence 222 23456656665311 2467888887 4421 23333333333334433 678888888888 5
Q ss_pred EEEEECCCc
Q 008058 276 CYIWYGQNI 284 (579)
Q Consensus 276 i~iwd~~~~ 284 (579)
+..||..+.
T Consensus 527 ~e~yd~~~~ 535 (557)
T PHA02713 527 QDTFNVYTY 535 (557)
T ss_pred hhhcCcccc
Confidence 566665443
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0029 Score=63.99 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=77.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee-EEEEccCCCEEEEEC--CeEEEEECCCCeeeE
Q 008058 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~ 193 (579)
...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+.+++|- |+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568889999999999999999999999887 788888887777777 999999999999997 999999999988776
Q ss_pred Eee-cCCCCEEEEEEec
Q 008058 194 KFS-GHPGAVRFMTFSD 209 (579)
Q Consensus 194 ~~~-~h~~~v~~l~~~~ 209 (579)
.+. .-..+|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2346677888863
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.03 E-value=0.081 Score=56.07 Aligned_cols=180 Identities=14% Similarity=0.152 Sum_probs=95.1
Q ss_pred CcEEEEEECC-C-----eEEEEEccCCeEEEEecCCCCC--CEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCce-
Q 008058 86 SSLLVLGTGG-G-----DVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGM-----VCEIDPLTGSL- 151 (579)
Q Consensus 86 ~~~l~~~~~~-g-----~i~iwd~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~- 151 (579)
+.+.++|+.+ | ++..||+.+++... ...-... ......+ +|...+.|+.||. |-.||..+.+-
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 5677788877 3 38899999888542 2111111 1111122 6777888888864 77788765432
Q ss_pred -eeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058 152 -LGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 -~~~~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
+..+.......... .-+|.+.++|+ .++..||..+++.. ..+..-.... .++. -++...+.+| .
T Consensus 410 ~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG-~ 484 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGG-F 484 (571)
T ss_pred ccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECC-c
Confidence 11111111111112 22677888776 36888998876532 2222111111 1222 3455566666 4
Q ss_pred CC-----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCC
Q 008058 221 ER-----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQN 283 (579)
Q Consensus 221 d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 283 (579)
|+ +|..||..+.+-. .+..+........++.. ++...++|+.|| +|..||..+
T Consensus 485 ~~~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~~-------~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVVL-------GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCCCccceEEEEcCCCCcee---EcccCccccccccEEEE-------CCEEEEEecccCccccceeEEcCCCC
Confidence 54 3777888877533 22223333333333333 567777888776 455555443
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.99 E-value=0.17 Score=48.55 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=90.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------- 155 (579)
++.|++|+.+| +++++........+.. +...|..+...|+-+.+++-+ |+.++++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77899999999 9999994333222332 334599999999877766664 599999998754433310
Q ss_pred ----ecCCCCeeEEE---EccCCCEEEEEC-CeEEEEECCCC-----eeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058 156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 156 ----~~~~~~v~~l~---~~p~g~~l~~~~-g~i~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~ 222 (579)
......+...+ -...+..++++. ..|.+|..... +..+++. -...+..+.|. ++.++.+. .+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence 11122444444 222344566665 78888877653 4555655 44778899998 44566664 44
Q ss_pred eEEEEEcCCCcc
Q 008058 223 YIALWRTDGVKK 234 (579)
Q Consensus 223 ~i~vwd~~~~~~ 234 (579)
...+.|+.++..
T Consensus 158 ~f~~idl~~~~~ 169 (275)
T PF00780_consen 158 GFYLIDLNTGSP 169 (275)
T ss_pred ceEEEecCCCCc
Confidence 588999987653
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.0028 Score=39.02 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd 145 (579)
..|...|.++.|++++..+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46888999999999999999999999999996
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.084 Score=52.74 Aligned_cols=137 Identities=17% Similarity=0.326 Sum_probs=94.6
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-------EEEEeCCCcEEEEeCCCC-c-eeeEeecC-
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-------IYSAGADGMVCEIDPLTG-S-LLGKFRAS- 158 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-------l~s~~~dg~v~iwd~~~~-~-~~~~~~~~- 158 (579)
+..+.....++-.|+..|+.+..... |.. |+-+.+.|+++. -+.|-.|..|.-||++-. . .+..-++|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 34444556699999999999866632 333 777778886542 234567888999998733 2 12222222
Q ss_pred ---CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 159 ---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 159 ---~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.....|.+-..+| ++++|+ |.|++||- .+.. ..-+++-..+|..+..+.+|++++.++ +.++.+-++.-
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 2356777777777 455555 99999996 4433 445788889999999999999998875 77888887643
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.72 E-value=0.083 Score=56.01 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=65.2
Q ss_pred CCEEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------
Q 008058 118 GGVSAISFATHGSCIYSAG------ADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------- 179 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g--------- 179 (579)
..+.+.+++|+|+.++... .|. .+.+++. .+.. ..+.. ....++-.|+|||+.+++.. +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999877665 243 4555564 2333 33322 22478889999988777663 2
Q ss_pred ----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 180 ----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 180 ----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
.+++.++..+.... ...+.|..+.|+|||..++... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 33333443333222 2356799999999999988875 577777
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.71 E-value=0.62 Score=50.98 Aligned_cols=206 Identities=15% Similarity=0.195 Sum_probs=117.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEE-eeeccccc------ccccCCcEE
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL 89 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l 89 (579)
+..+..++.++.|.-.|..+|+.+..+.......... .+ ..+.-+. |....... ........+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~--------~~--~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR--------QH--QTCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc--------cc--ccccceEEecCCcccccccccccccccCCEE
Confidence 4567778888999999999999998886432211000 00 0000111 11100000 000115578
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCcEEEE
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI 144 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-------------~l~~~~--~~~~l~s~~~----------dg~v~iw 144 (579)
++++.|+.+.-.|..+|+....+- ..+.|. .+.-.| .+..++.|+. +|.|+-+
T Consensus 264 ~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 264 ILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 999999999999999999987652 222211 111112 2345666642 6889999
Q ss_pred eCCCCceeeEeecC---------CC--------Ce-eEEEEccCCCEEEEEC--------------------CeEEEEEC
Q 008058 145 DPLTGSLLGKFRAS---------TK--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC 186 (579)
Q Consensus 145 d~~~~~~~~~~~~~---------~~--------~v-~~l~~~p~g~~l~~~~--------------------g~i~vwd~ 186 (579)
|.++|+.+..+..- .+ .+ ..++++|+..+++.+. +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99999988776521 00 11 2344555444444321 45777788
Q ss_pred CCCeeeEEeecCCCC---------EEEEEEec-CCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 187 SDHKKMQKFSGHPGA---------VRFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 187 ~~~~~~~~~~~h~~~---------v~~l~~~~-~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
++|+..-.++..... ..-+.+.. +|+ .++.++ .+|.+++.|-++++..
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence 889887766531111 11223332 553 555554 7999999999998754
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.62 E-value=0.14 Score=40.49 Aligned_cols=99 Identities=15% Similarity=0.287 Sum_probs=62.1
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEE
Q 008058 120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 120 V~~l~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~ 194 (579)
|+++++.. || +.|+.|+.|..|++|+ ....+..+.. ...|++++-...+++.+.-. |+|-+|+-. +.+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 56666654 43 4599999999999998 3466677764 45788888777655444333 999999753 23333
Q ss_pred eecCCCCEEEEEEec-C--C-CEEEEEecCCCeEE
Q 008058 195 FSGHPGAVRFMTFSD-N--G-KYVLSSAVGERYIA 225 (579)
Q Consensus 195 ~~~h~~~v~~l~~~~-~--~-~~l~s~s~~d~~i~ 225 (579)
.+. +..+.++.+.. + | +.|+++- .+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~Gw-snGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGW-SNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence 332 23366665543 2 2 2566665 477664
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.39 E-value=0.84 Score=42.46 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=94.4
Q ss_pred EEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCEEEEEC--CeEEE
Q 008058 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA--GQLKT 183 (579)
Q Consensus 109 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~l~~~~--g~i~v 183 (579)
+.++......-..++.|..+|..+-+.+.-| .|+.+|+.+|+......-... .-..++...| ++....= +...+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEE
Confidence 3344323334567888878888888888766 799999999987766543332 2234455433 2222222 89999
Q ss_pred EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC
Q 008058 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 184 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
||..+.+.+.++.- .+.=..++ .+++.|+.+. +...++.+|..+-+......+.....+...++-+-+ -+
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------i~ 184 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------IN 184 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------ET
T ss_pred EccccceEEEEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE------Ec
Confidence 99999999988863 34445666 5566666654 567899999877654321111111111112222222 14
Q ss_pred CcEEEEEEcCCeEEEEECCCceeecc
Q 008058 264 GLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 264 ~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
|...|-.=....|..-|..+|+....
T Consensus 185 G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 185 GKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred CEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 55444444466777777777766543
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.38 E-value=2 Score=46.74 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=120.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEE--ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPALDYFAICSGDARIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
+..+|--|+.||.++..||.+.-| |..+|.....-+ .+++.....+.-+... +
T Consensus 587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk-----------------~~lGt~P~~Lr~f~sk--------~ 641 (1096)
T KOG1897|consen 587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK-----------------VTLGTQPISLRTFSSK--------S 641 (1096)
T ss_pred eeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc-----------------cccCCCCcEEEEEeeC--------C
Confidence 555677778899999999988765 444554321111 1112111111111111 3
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEE-EEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCCC
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKG 161 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~ 161 (579)
..-+.+.+|.-..+|.-...-+..-+. -..+.. +.|+.+ +..++++. .+.+++.-+..-+ .++++.- ...
T Consensus 642 ~t~vfa~sdrP~viY~~n~kLv~spls---~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~~ 716 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSNGKLVYSPLS---LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GES 716 (1096)
T ss_pred ceEEEEeCCCCEEEEecCCcEEEeccc---hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CCC
Confidence 334555555555555543322221110 011111 123222 23455553 4456666554332 2334332 235
Q ss_pred eeEEEEccCCCEEEEEC----------------CeEEEEECCCCeeeEEee--cC--CCCEEEEEEecC-CCEEEEEec-
Q 008058 162 ISCMAVSSDGKMLATAA----------------GQLKTFNCSDHKKMQKFS--GH--PGAVRFMTFSDN-GKYVLSSAV- 219 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~----------------g~i~vwd~~~~~~~~~~~--~h--~~~v~~l~~~~~-~~~l~s~s~- 219 (579)
...+++.+....+.+.+ ..++++|-.+.+.+...+ .. ...+.++.|..| +.+++.|..
T Consensus 717 prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~ 796 (1096)
T KOG1897|consen 717 PRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL 796 (1096)
T ss_pred hhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe
Confidence 56777776444444432 246777766655443221 11 123555668877 667777653
Q ss_pred --------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 220 --------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
..|.|.++.+...+.. +.+....-.+.+.....| +|+++|+-+ ..|++|++.+.+.++.
T Consensus 797 v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v~Gav~aL~~f-------ngkllA~In--~~vrLye~t~~~eLr~ 863 (1096)
T KOG1897|consen 797 VYPDENEPVNGRIIVFEFEELNSL--ELVAETVVKGAVYALVEF-------NGKLLAGIN--QSVRLYEWTTERELRI 863 (1096)
T ss_pred eccCCCCcccceEEEEEEecCCce--eeeeeeeeccceeehhhh-------CCeEEEecC--cEEEEEEccccceehh
Confidence 2467777777763322 233334444555555555 577776554 5899999988866654
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.25 E-value=1.2 Score=44.29 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred CcEEEE-EECCCeEEEEEccCC----eEEEEecC--CC----CCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCC
Q 008058 86 SSLLVL-GTGGGDVLALAVSAG----QLKWRLSD--CH----PGGVSAISFATHGSCIYSAG------ADGMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~-~~~~g~i~iwd~~~~----~~~~~~~~--~h----~~~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~ 148 (579)
.++|++ |-.++.|+|.|+.+. ++.+.+.. -+ -.....+.--|+|+.++++- .-|-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 344555 447788999999853 33333211 01 11223344457898888863 234688889887
Q ss_pred CceeeEeecCCC---CeeEEEEccCCCEEEEEC----------------------CeEEEEECCCCeeeEEeecCC--CC
Q 008058 149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA 201 (579)
Q Consensus 149 ~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~----------------------g~i~vwd~~~~~~~~~~~~h~--~~ 201 (579)
.+....+..... .-+..-|.|.-+.+++.. +++.+||+.+.+.++++.--. ..
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 877777765332 345677888888888763 379999999999999886332 23
Q ss_pred EEEEEEe--cCCCEEEEEecCCCeEEEEEc-CCCccccceeEEeeecC-----------------ceeeEeEEecCCccc
Q 008058 202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD 261 (579)
Q Consensus 202 v~~l~~~--~~~~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 261 (579)
...+.|. |+..+=++++.-..+|..|-- ..++ -..+.+..+... ...++-+..+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 5577776 444443333323455555543 3332 212233333211 1223444454
Q ss_pred CCCcEEEEEEc-CCeEEEEECCCc
Q 008058 262 DAGLYVLAISE-TGVCYIWYGQNI 284 (579)
Q Consensus 262 ~~~~~l~s~~~-dg~i~iwd~~~~ 284 (579)
.|.++|...+. +|.|+.||+...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 78899988876 999999998654
No 394
>PHA03098 kelch-like protein; Provisional
Probab=96.24 E-value=0.27 Score=52.26 Aligned_cols=141 Identities=9% Similarity=0.097 Sum_probs=69.9
Q ss_pred CcEEEEEECCC------eEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCcee
Q 008058 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 152 (579)
+.++++|+.++ .+..||+.+++... ...-. ......+.+ +++.++.||.+ ..+..||+.+++-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 45566665442 47889988877642 21111 111222222 56667777755 35778888765422
Q ss_pred eE--eecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008058 153 GK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 153 ~~--~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
.. +...... .+++ .-++++++.|+ +.+..||..+.+-.. .++..... .++ ...++..++.||..
T Consensus 372 ~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCcc
Confidence 11 1111111 1222 23567777765 358899988764322 11111111 122 22355555655521
Q ss_pred C-------CeEEEEEcCCCc
Q 008058 221 E-------RYIALWRTDGVK 233 (579)
Q Consensus 221 d-------~~i~vwd~~~~~ 233 (579)
+ ..+.+||..+++
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCCCcccceEEEecCCCCc
Confidence 1 237888887764
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.18 E-value=2.6 Score=45.98 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=67.5
Q ss_pred cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecC--CCE
Q 008058 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDN--GKY 213 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~--~~~ 213 (579)
.||+++-. .....|.... .++....+.+...++.++ +.+...++..+. ++... .....|.|+.++|- ++.
T Consensus 471 ~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 46777633 2334454333 344444444444555544 455555555444 22222 23467999999974 333
Q ss_pred ---EEEEecCCCeEEEEEcC-CCccccceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 214 ---VLSSAVGERYIALWRTD-GVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 214 ---l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
+++.|.++..+.+--.- +.... +...+. .-+..+-...+. .|..+|.++..||.+..|.++
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~---~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILI---THEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCccee---eeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEEE
Confidence 44444577766555433 32211 111111 112223333443 568999999999988776543
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.16 E-value=0.17 Score=45.18 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=64.8
Q ss_pred eEEeeecccccccccCCcEEEEEECCCeEEEEE--ccCCeE-----EEEecC----CCCCCEEEEEEccCCCEEEEEeCC
Q 008058 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA--VSAGQL-----KWRLSD----CHPGGVSAISFATHGSCIYSAGAD 138 (579)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd--~~~~~~-----~~~~~~----~h~~~V~~l~~~~~~~~l~s~~~d 138 (579)
.++|.... ..+.++-+.+.+|.-|| ..+|.. +..+.+ +|. ..-+++...+|+..+++-..
T Consensus 162 gl~Wd~d~--------K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng 232 (310)
T KOG4499|consen 162 GLAWDSDA--------KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNG 232 (310)
T ss_pred cccccccC--------cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecC
Confidence 46676432 45667777888898888 556543 222222 111 12345556688888888899
Q ss_pred CcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008058 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (579)
++|...|+.+|+.+.+++-....|+|++|--
T Consensus 233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999999999998888999999963
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.08 E-value=0.23 Score=52.35 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=71.7
Q ss_pred EEEEECC-CeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCC---------CceeeEe-
Q 008058 89 LVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLT---------GSLLGKF- 155 (579)
Q Consensus 89 l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~- 155 (579)
+++...+ ..+.|||...+....+-.-...+.|.++.|. |+|+.+++.|-...|.+|.... ...++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 3444444 4599999999886544333457899999985 6899999999999999986421 1233332
Q ss_pred -ecCC-CCeeEEEEccCCCEEEEECCeEEEEEC
Q 008058 156 -RAST-KGISCMAVSSDGKMLATAAGQLKTFNC 186 (579)
Q Consensus 156 -~~~~-~~v~~l~~~p~g~~l~~~~g~i~vwd~ 186 (579)
..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 3344 488999999999999888899999974
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.05 E-value=0.5 Score=42.23 Aligned_cols=137 Identities=12% Similarity=0.201 Sum_probs=82.2
Q ss_pred cEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCC---C---cEEEE---eCC--CCceee
Q 008058 87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD---G---MVCEI---DPL--TGSLLG 153 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g---~v~iw---d~~--~~~~~~ 153 (579)
+.|+++...+.|.+|++.+.. ...++ ..-+.|..+.++..|+++++-=.+ . .+|+| ... ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 667777888999999998443 34444 244889999999999999986322 2 55664 222 112221
Q ss_pred -Eeec---------------------CCCCeeEEEEcc-CCCEEEEECCeEEEEECCCCee-e-----EEee-----cCC
Q 008058 154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK-M-----QKFS-----GHP 199 (579)
Q Consensus 154 -~~~~---------------------~~~~v~~l~~~p-~g~~l~~~~g~i~vwd~~~~~~-~-----~~~~-----~h~ 199 (579)
.+-+ -..++.+++..| .|++++...+.+.+|.+..... . ..|. -|.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123667888877 5666666669999998764322 1 1121 111
Q ss_pred C-CEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 200 G-AVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 200 ~-~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
+ ....+++. +.|++..+ +..+++..+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 1 24455555 45777664 667777654
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.04 E-value=1.5 Score=42.13 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=76.2
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECC-CCeee
Q 008058 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCS-DHKKM 192 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~-~~~~~ 192 (579)
+-.+.+..+..++||++++++..-....-||.-...-...-+.....|.+|.|.|++.+...+. |.|+.=+.. .....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence 3456789999999999888875555556787532211222223456999999999998877766 788887722 22211
Q ss_pred EE----eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee-ecCceeeEeEEecCCcccCCCcEE
Q 008058 193 QK----FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 193 ~~----~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
.. +....-.+..++|.+++...++++ .|.+ +...+.++.-. ..... .-+.....+.++. | ..-
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW~--~~~~~~~~~~n~~~i~f~~-----~--~~g 289 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTWQ--KDRVGENVPSNLYRIVFVN-----P--DKG 289 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS-E--E-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccce--ECccccCCCCceEEEEEcC-----C--Cce
Confidence 11 111223378899999888777664 5643 44555554221 11111 1233445555554 3 455
Q ss_pred EEEEcCCeEEEE
Q 008058 268 LAISETGVCYIW 279 (579)
Q Consensus 268 ~s~~~dg~i~iw 279 (579)
.+.+.+|.|.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 566788887665
No 400
>PHA02713 hypothetical protein; Provisional
Probab=95.85 E-value=0.31 Score=51.80 Aligned_cols=141 Identities=9% Similarity=0.082 Sum_probs=73.9
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC--------------------
Q 008058 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG-------------------- 139 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg-------------------- 139 (579)
+.+.++|+.++ ++..||+.+++....-. .........+.+ +|+..+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 56667777654 38899999876542111 001111112222 576667776542
Q ss_pred ---cEEEEeCCCCcee--eEeecCCCCeeEEEEccCCCEEEEEC--C------eEEEEECCC-Ce--eeEEeecCCCCEE
Q 008058 140 ---MVCEIDPLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--G------QLKTFNCSD-HK--KMQKFSGHPGAVR 203 (579)
Q Consensus 140 ---~v~iwd~~~~~~~--~~~~~~~~~v~~l~~~p~g~~l~~~~--g------~i~vwd~~~-~~--~~~~~~~h~~~v~ 203 (579)
.+..||+.+.+-. ..+....... +++ .-+|++.+.|+ + .+..||..+ .+ .+..++.......
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 4778888765422 1121111111 222 23577777775 1 367899887 43 2333332222222
Q ss_pred EEEEecCCCEEEEEecCCC--eEEEEEcCCCc
Q 008058 204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVK 233 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~ 233 (579)
.+.+ +|+..++|| .|+ .+..||..+.+
T Consensus 508 ~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DNTIMMLHC-YESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CCEEEEEee-ecceeehhhcCccccc
Confidence 2222 566777776 577 67777777765
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=1.5 Score=41.09 Aligned_cols=156 Identities=11% Similarity=0.044 Sum_probs=101.2
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
.+.+.|+|. .+.|++......-.++=..+|+.+.++.-.--...-.+.+..+|++.++--.++.++++.+.
T Consensus 88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 566777765 56678888888877887788888776643223445677888888887777788888888776
Q ss_pred CCceeeE----------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe-e--eEEeecC-------CCCEEEE
Q 008058 148 TGSLLGK----------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-K--MQKFSGH-------PGAVRFM 205 (579)
Q Consensus 148 ~~~~~~~----------~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-~--~~~~~~h-------~~~v~~l 205 (579)
....+.. ....+.....++|+|..+.|..+- +-+.||.+.... . +.....+ -..|+++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5422211 111245788999999888888876 545555443221 1 1111111 2347788
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 206 TFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.|++....+++-|.+++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 898766666666667888888777654
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.78 E-value=0.64 Score=49.39 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=99.0
Q ss_pred CcEEEEEECCC------eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceee
Q 008058 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 153 (579)
+.++++|+..+ .+..||+.++....-....+...-.++++. +|...++||.| .++..||..+++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 56777777774 388999999865432222222333444444 45677888888 357888987765222
Q ss_pred --EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEE-ecCCCEEEEEecCCC-
Q 008058 154 --KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF-SDNGKYVLSSAVGER- 222 (579)
Q Consensus 154 --~~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~s~~d~- 222 (579)
.+....... +++. -+|.+.++|+ .++..||..+.+--..-+ ......+... .-+|...+++| .++
T Consensus 364 ~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG-~~~~ 439 (571)
T KOG4441|consen 364 VAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGG-GDGS 439 (571)
T ss_pred cCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcC-cCCC
Confidence 111111111 1121 2678888887 368899988764321111 1112222222 23566666665 343
Q ss_pred -----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (579)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 284 (579)
++..||..+++-. ....+........+.. -++...+.|+.|| ++..||..+.
T Consensus 440 ~~~l~sve~YDP~t~~W~---~~~~M~~~R~~~g~a~-------~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWT---LIAPMNTRRSGFGVAV-------LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ccccceEEEEcCCCCcee---ecCCcccccccceEEE-------ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 5778888776532 2222222222222232 2667778888776 2566765544
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.063 Score=58.14 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce-eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE
Q 008058 128 HGSCIYSAGADGMVCEIDPLTGSL-LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (579)
Q Consensus 128 ~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (579)
.+..++.|++.|.|-..|+...-. ...=..-.++|++++|+.+|+.++.|- |.|.+||+..++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 455788899999999988754311 111112345999999999999999987 89999999999999988888777666
Q ss_pred EEE---ecCCCEEEEEecCCCeEEEEEcC
Q 008058 205 MTF---SDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 205 l~~---~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
+-+ ..++..++++ +.-| .+|.+.
T Consensus 178 vi~v~~t~~nS~llt~-D~~G--sf~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTS-DTGG--SFWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEc-cCCC--ceEEEE
Confidence 543 4455545543 2344 367653
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=95.61 E-value=1.1 Score=46.85 Aligned_cols=179 Identities=5% Similarity=-0.117 Sum_probs=85.7
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCceee--Ee
Q 008058 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLG--KF 155 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~--~~ 155 (579)
+.++++|+.++ .+..||+.+++........ .......+. -+|...+.|+.+ ..+..||..+++-.. .+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 44556666543 4778999887754221111 111112222 356666667653 458889876553221 11
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 156 RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
....... ++ ..-+|++.+.|+ ..+..||.++.+-... +...... .++ ..-+++..+.|| .+.+||
T Consensus 350 ~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG----~~e~yd 421 (480)
T PHA02790 350 LKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR----NAEFYC 421 (480)
T ss_pred CCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC----ceEEec
Confidence 1111111 22 223677777776 3577888876643221 1111111 122 223455444443 467788
Q ss_pred cCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 284 (579)
..+++-. .+..+..+.....++. -+|+..+.|+.+ ..+..||..+.
T Consensus 422 p~~~~W~---~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWT---LIDDPIYPRDNPELII-------VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEe---EcCCCCCCccccEEEE-------ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 8765422 2222222222223333 256777777654 24666665543
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=0.035 Score=49.44 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=75.9
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEE-
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM- 165 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l- 165 (579)
.+..-+.+|.|.-+++...+...+....|...-.- -.-+..+++|+.+|.|++|..... .....+..-...|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 35556677777777776544322222223333111 123556899999999999987521 1111111112233332
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEE--ecCCCeEEEEEcCC
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS--AVGERYIALWRTDG 231 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--s~~d~~i~vwd~~~ 231 (579)
.-..++.+..++. |.|+.|++.-++.+.....|. .++.....+..++++.++ | .|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence 2223444555555 899999998887776666666 444444444444444444 3 355555555544
No 406
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.44 E-value=0.041 Score=36.11 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=28.0
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (579)
++| -+++|+|..++||.|+.||.|.|+.+ +++.
T Consensus 12 ~~v--~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRV--SCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcE--EEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456 46699999999999999999999998 5543
No 407
>PHA03098 kelch-like protein; Provisional
Probab=95.42 E-value=1 Score=47.93 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=68.8
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~ 154 (579)
+.+.+.|+.+ .++..||+.+++....-...+...-.+++ .-+++..+.||.+ ..+..||+.+++-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 5666777654 34888998887653211101111011112 1256666666632 4588899876542211
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC-C---------eEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008058 155 --FRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~-g---------~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
+...... .++ ...++.+++.|+ . .+.+||..+++-.. .+.........+. -+++.++.+|..
T Consensus 422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 1111111 122 223566777765 1 38889988765322 1111111111122 256666666532
Q ss_pred ----CCeEEEEEcCCCc
Q 008058 221 ----ERYIALWRTDGVK 233 (579)
Q Consensus 221 ----d~~i~vwd~~~~~ 233 (579)
.+.+.+||..+.+
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 2357777776653
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.24 E-value=0.078 Score=34.78 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008058 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 151 (579)
....|..++|+|....++.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 5554
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.22 E-value=0.42 Score=47.74 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=94.5
Q ss_pred EEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
-...|..++. .|+....++=.|++.|+.+.++..+... .+.|.|.+.-.... ...-+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt--------------------~eqtl 531 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT--------------------DEQTL 531 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC--------------------ccceE
Confidence 3445555554 4555567777789999999888766554 33444441111100 23346
Q ss_pred EEECCCeEEEEEccCCe-EEE--EecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058 91 LGTGGGDVLALAVSAGQ-LKW--RLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~-~~~--~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+|-++..|.-.|++-.. .+. +... .......+..-. ...+++.++..|.|++||--.-+....+.+-...|..+.
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id 610 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID 610 (776)
T ss_pred EeecccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence 77777777777776322 111 1100 001112222222 455899999999999999543344444677777999999
Q ss_pred EccCCCEEEEEC-CeEEEEECC
Q 008058 167 VSSDGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 167 ~~p~g~~l~~~~-g~i~vwd~~ 187 (579)
.+.+|+++++.+ ..+.+-|++
T Consensus 611 vta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeecceEEEEecc
Confidence 999999988887 888888875
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=2.2 Score=40.02 Aligned_cols=118 Identities=7% Similarity=0.112 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~ 190 (579)
.+-...|.++.|+|+.+.|++......-.++=-.+|+.++++.-.. .....|.+..+|++.++-- +.++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999999888877777777667899988865321 2345678877766666655 788888776542
Q ss_pred eeE-----Ee----ecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 191 KMQ-----KF----SGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 191 ~~~-----~~----~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.+. .+ ..+ +...-.++|.|....|+.+= +-+-+.||.+...
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~ 212 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQS 212 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecC
Confidence 221 11 112 44567899999888887764 5566777766543
No 411
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=0.09 Score=46.90 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=60.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (579)
+.-++.|+.+|.|.+|+.............-...| ..+.--.++.+..+++.||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 56699999999999998873221111111111222 223333355678889999999999998887776666565 3444
Q ss_pred EEEEccCCCEEEEE--C--CeEEEEECC
Q 008058 164 CMAVSSDGKMLATA--A--GQLKTFNCS 187 (579)
Q Consensus 164 ~l~~~p~g~~l~~~--~--g~i~vwd~~ 187 (579)
....+..++.++++ + ..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444444444 2 345555553
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=94.93 E-value=2.1 Score=44.67 Aligned_cols=140 Identities=10% Similarity=-0.043 Sum_probs=66.8
Q ss_pred CcEEEEEECC--CeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeE--eec
Q 008058 86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGK--FRA 157 (579)
Q Consensus 86 ~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~--~~~ 157 (579)
+.+.++|+.+ ..+..||+.+++......-.+ ......+. -+|+..+.||.++ .+..||..+.+-... +..
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 5556666643 348889988776532111111 11112222 2676667776543 477888876532211 111
Q ss_pred CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCC-----CeEEEEEcC
Q 008058 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYIALWRTD 230 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-----~~i~vwd~~ 230 (579)
.... .+++ .-+|++.+.| |.+.+||.++++-. ..+....... +++. -+|+..+.||. + ..+..||..
T Consensus 397 ~r~~-~~~~-~~~~~IYv~G-G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~-~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 PHYK-SCAL-VFGRRLFLVG-RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGF-YRGSYIDTIEVYNNR 470 (480)
T ss_pred cccc-ceEE-EECCEEEEEC-CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCc-CCCcccceEEEEECC
Confidence 1111 1222 2345555544 56778988776432 2222111111 2222 35666666652 3 246666665
Q ss_pred CCc
Q 008058 231 GVK 233 (579)
Q Consensus 231 ~~~ 233 (579)
+++
T Consensus 471 ~~~ 473 (480)
T PHA02790 471 TYS 473 (480)
T ss_pred CCe
Confidence 543
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.91 E-value=3.8 Score=39.44 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=73.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceeeE----eecCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK----FRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~----~~~~~~ 160 (579)
+.+++++....-..-||.-.......- ..-...|..+.|.|++...+.+ ..|.|+.=+. ...+.... +....-
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 666666655555667876543322122 2345789999999998765544 8888888772 22222111 111223
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
.+..++|.+++...++|++-..+.....|+.-..-. .-......|.|.++.+-++.+ .+|.+--|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence 588999999999999888333444556666544432 234568889998776666664 58877655
No 414
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.91 E-value=3.7 Score=41.23 Aligned_cols=202 Identities=18% Similarity=0.188 Sum_probs=110.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (579)
...+++++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.+|.++.+|..+|+.+..+.... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5567888999999999999999776543222 12333333333665 7788899999999998999988877655 1222
Q ss_pred EEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCC---CCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccc
Q 008058 164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~s~s~~--d~~i~vwd~~~~~~~~~ 237 (579)
.-.+-.++..++... +.+.-.|..+++..-....-. ..+..--...++ .++.+. . ++.+.-.|...+...-.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~-~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGS-DGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEec-CCCcceEEEEEccCCcEeee
Confidence 223333555555534 888888888887765543211 111110112233 333333 3 44566666666653310
Q ss_pred e-eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058 238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
. ........... ....+....+ -.+.-+..++.+|.+.-.|..+++.+.....
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAIS-TTPAVDGGPV-YVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCccccc-ccccccCceE-EECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 0 00111111000 0011100000 0122346677788899999999988866544
No 415
>PRK13684 Ycf48-like protein; Provisional
Probab=94.86 E-value=4.4 Score=39.97 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=82.8
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEE-eCCCCceeeEee-cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008058 117 PGGVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iw-d~~~~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~ 193 (579)
...+.++.+.|++.+++++ ..|.+..- | ..++...... .....++++.+.|+++.++++. |.+.+=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4568899999988666554 56655432 2 2223222222 2334789999999999888888 665432334443322
Q ss_pred EeecC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEe-eecCceeeEeEEecCCcccCCCcEEE
Q 008058 194 KFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 194 ~~~~h----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
....+ ...+..+.+.|+++.+++ + .+|.+. .....++.- ..... ...+......+.. .+ ...+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~-~~~~ 317 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DP-EKGF 317 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CC-CceE
Confidence 22111 234778899998876554 4 477554 444444322 11110 0111223333433 23 3445
Q ss_pred EEEcCCeEEEEEC
Q 008058 269 AISETGVCYIWYG 281 (579)
Q Consensus 269 s~~~dg~i~iwd~ 281 (579)
..+..|.|-.|+-
T Consensus 318 ~~G~~G~il~~~~ 330 (334)
T PRK13684 318 VLGQRGVLLRYVG 330 (334)
T ss_pred EECCCceEEEecC
Confidence 6677788887763
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.77 E-value=1.2 Score=45.66 Aligned_cols=145 Identities=11% Similarity=0.167 Sum_probs=86.8
Q ss_pred CCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC-----CEEEEEC-CeEEEEECC-
Q 008058 118 GGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG-----KMLATAA-GQLKTFNCS- 187 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g-----~~l~~~~-g~i~vwd~~- 187 (579)
-+|.+++|. ||+.++-.. .+|.+++=| .+.+..| ..|..+.|.|-+ .+||+-. ..|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 368899996 566544332 234443322 1233333 367889999843 4666666 899999886
Q ss_pred ----CCeeeEEeecCC---CC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058 188 ----DHKKMQKFSGHP---GA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 188 ----~~~~~~~~~~h~---~~--v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
.++.+..-..+- -+ -..+.|+|....|+.-.. ...-.+++++..... ....+ .....+.|.+|.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-~dvSV~~sV~~d~sr---VkaDi-~~~G~IhCACWT-- 164 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-RDVSVLPSVHCDSSR---VKADI-KTSGLIHCACWT-- 164 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-CceeEeeeeeeCCce---EEEec-cCCceEEEEEec--
Confidence 233333322221 11 246789999988877663 333345566554322 22223 556678899998
Q ss_pred cccCCCcEEEEEEcC-CeEEEEE
Q 008058 259 GVDDAGLYVLAISET-GVCYIWY 280 (579)
Q Consensus 259 ~~~~~~~~l~s~~~d-g~i~iwd 280 (579)
+||++|+++-.. =.-++||
T Consensus 165 ---~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 165 ---KDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ---CcCCEEEEEeCCeEEEEEec
Confidence 899888776443 3567887
No 417
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=2.4 Score=37.53 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058 16 ALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 16 dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
+|.++.+.+. ...|++||+.+|+.+.+-+-.. ...|.. ..+ . .+..+-...-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgE---------Git--~-----------~gd~~y~LTw 108 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGE---------GIT--K-----------LGDYFYQLTW 108 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC----cccccc---------cee--e-----------ccceEEEEEe
Confidence 3445555443 4579999999999876554211 111111 111 0 0134456666
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--C---CCeeEEEEc
Q 008058 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--T---KGISCMAVS 168 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~---~~v~~l~~~ 168 (579)
.+|.-..||..+-+++.++. ..+.=++++. |++.|+.++...+++.-|.++.....++... . ..++.+.|-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV 184 (262)
T ss_pred ccceeEEEChHHhhhhcccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence 78888999999887765553 2233455554 6666877777778888887765544433211 1 123344443
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEe------------ecCCCCEEEEEEecCCCEEEEEe
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKF------------SGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~------------~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
+|...|-.= ..|...|..+|+.+..+ ..|..-.+.|++.|++..++..|
T Consensus 185 -dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 -DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 454444332 45555556666554433 23445677899999875555544
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.38 E-value=4.6 Score=38.03 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=54.3
Q ss_pred CcEEEEEECCCeEEEEE-ccCCeEEE-Eec-CCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCC---CC------c
Q 008058 86 SSLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------S 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd-~~~~~~~~-~~~-~~h~~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~---~~------~ 150 (579)
+...++...+....++. ...+.... .+. ..-...|+.+.++|||..++... .++.|.+--+. .+ .
T Consensus 77 g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 77 GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 44455555555555553 33333211 111 11112899999999999877665 35677766443 22 1
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058 151 LLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
...........+..++|.+++.+++.+.
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeC
Confidence 1112222345889999999999888876
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.25 E-value=5 Score=37.96 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=112.1
Q ss_pred ccceEEEEccCCCEEEEEeCCCcEEEEECCC------C-eEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 6 IRDILTSFSPALDYFAICSGDARIKIWDTLK------G-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
++.+=++|+|.+.+-++....+...+||... . .++-.+..... .+.....|-+.|...+.
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-------------~~~~~~PTGiVfN~~~~ 89 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-------------LAAEGTPTGQVFNGSDT 89 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-------------CCCCCCccEEEEeCCCc
Confidence 3455679999998777766778899999861 1 12222221111 01112233344432210
Q ss_pred c---cccccCCcEEEEEECCCeEEEEEccCCeE-----EEEecCCCCCCE-EEEEEcc--CCCEEEEEe-CCCcEEEEeC
Q 008058 79 K---KKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGV-SAISFAT--HGSCIYSAG-ADGMVCEIDP 146 (579)
Q Consensus 79 ~---~~~~~~~~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V-~~l~~~~--~~~~l~s~~-~dg~v~iwd~ 146 (579)
- ...+.....++.++.+|+|.-|...-+.. ...+.....+.| ..+++.. .+.+|+.+. ..++|.+||-
T Consensus 90 F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 90 FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 0 00001145689999999999999753322 112222222444 3556553 356676664 6789999984
Q ss_pred CCCceeeE---eecC-----CCC-----------eeEEEEccCCCEEEEE-C-CeEEEEECCCCeeeEEee--cCCCCEE
Q 008058 147 LTGSLLGK---FRAS-----TKG-----------ISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFS--GHPGAVR 203 (579)
Q Consensus 147 ~~~~~~~~---~~~~-----~~~-----------v~~l~~~p~g~~l~~~-~-g~i~vwd~~~~~~~~~~~--~h~~~v~ 203 (579)
. ...+.. |... -.+ |+-..-.++++.=+.| + |-|-+||. .++.++.+. +.-...+
T Consensus 170 ~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW 247 (336)
T TIGR03118 170 S-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW 247 (336)
T ss_pred c-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence 3 222211 1111 001 1111112222211112 2 78999997 566777773 2334456
Q ss_pred EEEEec------CCCEEEEEecCCCeEEEEEcCCCc
Q 008058 204 FMTFSD------NGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 204 ~l~~~~------~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.|+..| .+.. +.+-..||+|..+|..+++
T Consensus 248 G~a~APa~FG~~sg~l-LVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 248 GLAIAPESFGSLSGAL-LVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eeeeChhhhCCCCCCe-EEeecCCceeEEecCCCCc
Confidence 677755 3444 4555689999999998776
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.17 E-value=0.05 Score=57.67 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=74.6
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE-----------EccCCCEEEEE
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSA 135 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~ 135 (579)
...-+.|.+.-.. ..++..+..+|.|++.+..+... .+..+|...+++++ .+|||..|+.+
T Consensus 182 ~~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred Ccceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 3356778776544 45667777788877766654433 33345766655543 58999999999
Q ss_pred eCCCcEEEEeCC-----CCceeeEeecCCC-CeeEEEEccCC---------CEEEEEC---CeEEEEECCCCeee
Q 008058 136 GADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM 192 (579)
Q Consensus 136 ~~dg~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~~p~g---------~~l~~~~---g~i~vwd~~~~~~~ 192 (579)
+.||.++.|.+. .-++...++.|.+ +-.|.-++... .+++++. ..+++|.....+++
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999998888653 3356667777774 33333344322 1344444 57888887766654
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.28 Score=53.68 Aligned_cols=153 Identities=7% Similarity=-0.026 Sum_probs=93.7
Q ss_pred eEEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
+.+...+|+...++... +-.|..||+++-......+.. + +.++.. .-.......|+.|.|.- .
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~--p---l~~s~t--s~ek~vf~~~~~wnP~v--------p 168 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV--P---LKNSAT--SFEKPVFQLKNVWNPLV--------P 168 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc--c---cccccc--hhccccccccccccCCc--------c
Confidence 44477778776655443 336788898754322111000 0 000000 00112344578888765 3
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v 162 (579)
...+++..|+.|++..+..-...... ..-...+++++|+|.|+.++.|-..|++.-|-. +++....+.+. ...|
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrv 246 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRV 246 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcce
Confidence 44688889999988877543322122 124567899999999999999999999999885 34444443322 3589
Q ss_pred eEEEEccCCCEEEEEC
Q 008058 163 SCMAVSSDGKMLATAA 178 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~ 178 (579)
.+|+|-....++++-+
T Consensus 247 l~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eEEEEecceeEEEEec
Confidence 9999988777777654
No 422
>PRK10115 protease 2; Provisional
Probab=93.99 E-value=12 Score=41.16 Aligned_cols=188 Identities=9% Similarity=0.049 Sum_probs=94.3
Q ss_pred EEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 11 ~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
+.+||||++||.+.. ..+|++-|+.+|..+...- .... ..+.|.+.+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------------------~~~~-~~~~w~~D~-------- 183 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------------------DNVE-PSFVWANDS-------- 183 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------------------cCcc-eEEEEeeCC--------
Confidence 478999999887643 2357888887775321100 0111 246776542
Q ss_pred CcEEEEEECC-----CeEEEEEccCC--eEEEEecCCCCCCEE-EEEEccCCCEEEEEe---CCCcEEEEeCC--CCcee
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAG--QLKWRLSDCHPGGVS-AISFATHGSCIYSAG---ADGMVCEIDPL--TGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~--~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~---~dg~v~iwd~~--~~~~~ 152 (579)
..++++...+ ..|+.+++.++ +-. .+..+...... ....+.++++++..+ .++.+.+++.. ++...
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF 262 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence 2333443322 35888998887 222 12222223333 334454888765543 34578888842 34322
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecC-C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h-~-~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
..+....+....+. +..+.+++... ..|...++........+..+ . ..+..+.+. +.+|+.....++.-+
T Consensus 263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~ 339 (686)
T PRK10115 263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS 339 (686)
T ss_pred EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence 22222222223322 33344444433 24554555522222334344 3 367778877 345555555677666
Q ss_pred EEEcC
Q 008058 226 LWRTD 230 (579)
Q Consensus 226 vwd~~ 230 (579)
++-+.
T Consensus 340 l~~~~ 344 (686)
T PRK10115 340 LRQIN 344 (686)
T ss_pred EEEEc
Confidence 65554
No 423
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.99 E-value=5.5 Score=37.48 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEe-CCCCceee-EeecC--CCCeeEEEEccCCCEEEEEC-----CeEEEEECC--
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS-- 187 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~-- 187 (579)
.+..-.|++++...+....+...+++. ..++.... ..... ...|..+.++|||..++... +.|++--+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 678889999977666666666666663 33343221 12211 12899999999999887643 567666443
Q ss_pred -CC------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE-EEcCC
Q 008058 188 -DH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDG 231 (579)
Q Consensus 188 -~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v-wd~~~ 231 (579)
.+ ..+.........+..+.|.+++..++.+...+..+.. .....
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 22 1122222335678999999999887777655554444 44433
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=3.6 Score=40.87 Aligned_cols=147 Identities=9% Similarity=0.122 Sum_probs=94.2
Q ss_pred CcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~ 159 (579)
.+..+.+..+|.+.=|-+... .....+.....++|.++.|++|++.++.--.+++|.+++....+ ...+.+...
T Consensus 33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~ 112 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKN 112 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCc
Confidence 344566666666666665432 23333333456799999999999999999999999999974332 222334444
Q ss_pred CCeeEEEEccCCCEEEEECCeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCC
Q 008058 160 KGISCMAVSSDGKMLATAAGQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~~ 232 (579)
..|....|+.+....+....-+.+|.+.. .+.++..+.|...|....|.++.+.++-+++ ..+++.=+.++.+
T Consensus 113 ~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 113 ANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 56889999876444444445566666543 3345556778888999999998876554442 3444444444443
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.94 E-value=3.5 Score=44.97 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=28.7
Q ss_pred CCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 008058 115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 115 ~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~ 149 (579)
.+...|..+.|+|. +.+|+.=..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 35567899999995 578888889999999998654
No 426
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.66 E-value=3 Score=34.28 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=69.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCC--------ceeeEeecCCCCeeEEEEcc-----CCCEEEEEC-CeEEEEECC
Q 008058 122 AISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 122 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p-----~g~~l~~~~-g~i~vwd~~ 187 (579)
.-.|......|++++.-|+|.+++.... ..+..+. -...|++++-.+ +...|+.|+ ..+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 3456555667888889999999987633 2334444 345777876544 456888888 899999998
Q ss_pred CCeeeEEeecCCCCEEEEEEec----CCCEEEEEecCCCeEEEEEcCCCc
Q 008058 188 DHKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 188 ~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
...-+.. +.-...|+++.+-. ....++.+ .+..|.-||....+
T Consensus 82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivG--Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVG--GNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhh-hhCccceeEEEEEecCCCCCcEEEEC--ceEEEEEeCCCCcE
Confidence 7755432 22345677776632 23444444 36777777766544
No 427
>PRK10115 protease 2; Provisional
Probab=93.62 E-value=13 Score=40.67 Aligned_cols=98 Identities=8% Similarity=0.023 Sum_probs=59.9
Q ss_pred CcEEEEEEC-CCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC--cee
Q 008058 86 SSLLVLGTG-GGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL 152 (579)
Q Consensus 86 ~~~l~~~~~-~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~--~~~ 152 (579)
+++|+.+.. +|. |++.|+.+|..+.....+ .-..++|.+|++.|+.+..+ ..|+.+++.++ +..
T Consensus 138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 566665543 343 999999888743333221 12569999999876665432 36888888887 444
Q ss_pred eEeecCCCCee-EEEEccCCCEEEEEC-----CeEEEEEC
Q 008058 153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC 186 (579)
Q Consensus 153 ~~~~~~~~~v~-~l~~~p~g~~l~~~~-----g~i~vwd~ 186 (579)
..+........ .+..+.++++++..+ +.+.+|+.
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 44554333333 333444888766544 57888885
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.54 E-value=2.5 Score=45.96 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~ 146 (579)
.|..+.++|+|.+++..|..|. .+..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence 5888999999999988887664 44443
No 429
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=93.34 E-value=0.17 Score=42.94 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=69.8
Q ss_pred hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHhh--hhhhhh
Q 008058 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL--FASAFT 569 (579)
Q Consensus 492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~s~~~l~~~l~~l~~~~~~r~--~~~~~~ 569 (579)
..++..+..-+...+.++|+|+. +.-.+|.....++.++..+|-..+..+-..|.+...+..|+..+.+-+ +..+..
T Consensus 62 ~~L~~AL~~Rde~~L~piL~Fl~-k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~ 140 (148)
T PF09384_consen 62 GALRAALAGRDEESLEPILKFLI-KNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKELLE 140 (148)
T ss_pred cHHHHHHHhCCHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888899999999999999 555889999999999999999999999999889999999999888777 555555
Q ss_pred hceeeeE
Q 008058 570 CFILLYL 576 (579)
Q Consensus 570 ~~~~~~~ 576 (579)
..|-|.|
T Consensus 141 l~G~ld~ 147 (148)
T PF09384_consen 141 LQGMLDM 147 (148)
T ss_pred HHhHHhh
Confidence 4444433
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.26 E-value=3.8 Score=43.45 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=68.6
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe--cCCCEEEEEecCCCeEEEEEcCC---
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS--DNGKYVLSSAVGERYIALWRTDG--- 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~s~s~~d~~i~vwd~~~--- 231 (579)
..+.-+.-+.-++..++-+ ..+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.| -.+.|.+|.-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhh
Confidence 3455555555555555544 699999999887533222 356889999885 7899999988 488888885321
Q ss_pred -CccccceeEEe---eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 232 -VKKQSASCVLA---MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
....+...+.. ..+....+....|- ++|..++++ ++.+.|||
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence 11111112222 12333344555554 677766544 45888887
No 431
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.25 E-value=4.9 Score=41.45 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=73.3
Q ss_pred CCCCEEEEEEccC----CCEEEEEeCCCcEEEEeCC-----CCceeeEeecCCC-----CeeEEEEccCCCEEEEEC-Ce
Q 008058 116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRASTK-----GISCMAVSSDGKMLATAA-GQ 180 (579)
Q Consensus 116 h~~~V~~l~~~~~----~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~-----~v~~l~~~p~g~~l~~~~-g~ 180 (579)
+-.-|.++.|.|- -..+++.-....|.+|.+. .++.+..-..+-. -...+.|+|....|++=. ..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3456899999984 3356666688899999875 2232222111111 224568999988887655 44
Q ss_pred E-EEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 181 L-KTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 181 i-~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+ .+++++. .+....+. ..+.|.+.+|.+||+.|+.+-...=.-++||-...
T Consensus 135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 4 3445543 33344453 56789999999999988876533335678885543
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.14 E-value=3.6 Score=41.24 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCEEEEEEccCCCEEEEEeCC-------------------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058 118 GGVSAISFATHGSCIYSAGAD-------------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d-------------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
.....+.|.|||.+.++.+.. |.|.-+|...++. ..+...-.....++|+|+|+++++-.
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 447889999999866554421 3345555443332 22221122345677777777665533
No 433
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.03 E-value=8.9 Score=36.87 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=81.5
Q ss_pred eEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCC-----CEEEEEe-CCCcEEEEeCCCCceeeEeecC-------
Q 008058 97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------- 158 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~-----~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------- 158 (579)
+|.+||+.+++.+.++.-. ..+.+.++.+.... .+++.+. ..+-+.++|+.+++..+....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 4778899998877665321 24567888887622 2444443 4467999999988765443321
Q ss_pred ------------CCCeeEEEEcc---CCCEEEEEC-CeEEEEECCCC--------------eeeEEeecC-CCCEEEEEE
Q 008058 159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSDH--------------KKMQKFSGH-PGAVRFMTF 207 (579)
Q Consensus 159 ------------~~~v~~l~~~p---~g~~l~~~~-g~i~vwd~~~~--------------~~~~~~~~h-~~~v~~l~~ 207 (579)
...+..++.+| +|+.|.-.. ..-++|.+.+. +.+..+ |. .+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 23466777765 667777665 44455544321 112222 22 246678899
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 208 SDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 208 ~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+++|..+++-- ..+.|..|+..+.
T Consensus 194 D~~G~ly~~~~-~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 194 DPNGNLYFTDV-EQNAIGCWDPDGP 217 (287)
T ss_dssp ETTTEEEEEEC-CCTEEEEEETTTS
T ss_pred CCCCcEEEecC-CCCeEEEEeCCCC
Confidence 99998777665 7899999998874
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.62 E-value=0.33 Score=51.83 Aligned_cols=137 Identities=14% Similarity=0.176 Sum_probs=80.7
Q ss_pred CeEEEEEcc--CCeEE----EEecCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE-
Q 008058 96 GDVLALAVS--AGQLK----WRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM- 165 (579)
Q Consensus 96 g~i~iwd~~--~~~~~----~~~~~~h~~~V~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l- 165 (579)
|...+|++. .|+.. .+........+.-+.|.| +.-++..+-.++.+++....+... ..|++|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 668888876 34332 222222333444445544 566677777888888876543322 3345565544433
Q ss_pred ----------EEccCCCEEEEEC--CeE-----EEEECCCCeeeEEeecCC-CCEEEEEEecCC---------CEEEEEe
Q 008058 166 ----------AVSSDGKMLATAA--GQL-----KTFNCSDHKKMQKFSGHP-GAVRFMTFSDNG---------KYVLSSA 218 (579)
Q Consensus 166 ----------~~~p~g~~l~~~~--g~i-----~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~---------~~l~s~s 218 (579)
.++|||+.++.+. |.+ +|.+....+++..++.|. .+-.|.-|+.+. .++++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 3689999999876 654 444555556677777777 343333344321 2456666
Q ss_pred cCCCeEEEEEcCCCc
Q 008058 219 VGERYIALWRTDGVK 233 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (579)
..++-+++|.....+
T Consensus 312 d~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQ 326 (1283)
T ss_pred cCCcceeEeeccchh
Confidence 566778999876655
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.36 E-value=9.4 Score=35.53 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=112.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE---eecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK---FRASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~v 162 (579)
+..-+.+...|.|--.|..+|+...-- -+....-..+..-|||..-++-+.. -|.-.|.++.+..+- .+......
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANL 150 (353)
T ss_pred CceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcc
Confidence 566677788888888999999876333 3455667888889998876654443 566667655543221 12223477
Q ss_pred eEEEEccCCCEEEEEC----C-------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 163 SCMAVSSDGKMLATAA----G-------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~----g-------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
....|.+.|++-.++. | .|++|+.- ....-..|+..|+|..-++.- .++.|-..|...
T Consensus 151 et~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasl-agnaiaridp~~ 219 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASL-AGNAIARIDPFA 219 (353)
T ss_pred cceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEec-cccceEEccccc
Confidence 8889999999988876 2 34455432 223356788999998766653 677888888776
Q ss_pred CccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 232 VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+... ++..... ..-..-++.+ |.|+.-++....|.++-||..+.
T Consensus 220 ~~ae----v~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 220 GHAE----VVPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred CCcc----eecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCcccc
Confidence 6322 1111111 1222334443 77777777666778888875543
No 436
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.29 E-value=13 Score=36.96 Aligned_cols=191 Identities=15% Similarity=0.250 Sum_probs=106.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC-
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (579)
...+++....++=+.+||++ |+.++.+.........+.+.- +.+.+ ..-|++++.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf-----------------~l~g~------~vDlavas~R 122 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGF-----------------PLNGK------TVDLAVASDR 122 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEE-----------------EETTE------EEEEEEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecce-----------------ecCCc------eEEEEEEecC
Confidence 44567777778889999986 666666642111111111110 00100 112444443
Q ss_pred C---CeEEEEEcc--CCeEEEEecC-C-----CCCCEEEEEEc--c-CCC-EEEEEeCCCcEEEEeCC---CC----cee
Q 008058 95 G---GDVLALAVS--AGQLKWRLSD-C-----HPGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SLL 152 (579)
Q Consensus 95 ~---g~i~iwd~~--~~~~~~~~~~-~-----h~~~V~~l~~~--~-~~~-~l~s~~~dg~v~iwd~~---~~----~~~ 152 (579)
+ ..|++|.+. ++... .+.. . ....++.+|+- | +|. +++....+|.+..|-+. .+ +.+
T Consensus 123 ~~g~n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 123 SDGRNSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp CCCT-EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE
T ss_pred cCCCCeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE
Confidence 2 358888775 44432 2211 1 11347788773 3 455 46667788988888764 33 467
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-----CeeeEEeec--CCCCEEEEEEec--CC-CEEEEEecC
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAVG 220 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-----~~~~~~~~~--h~~~v~~l~~~~--~~-~~l~s~s~~ 220 (579)
++|.. ...+..+........|+.+. .-|+-|+.+. ++.+....+ ....|-.|++.. ++ .||++++..
T Consensus 202 R~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 202 REFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred EEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 77775 34788999998888888887 4566666652 233333322 346788887754 33 378887778
Q ss_pred CCeEEEEEcCCC
Q 008058 221 ERYIALWRTDGV 232 (579)
Q Consensus 221 d~~i~vwd~~~~ 232 (579)
+++..+|+....
T Consensus 281 ~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 281 DNSFAVYDREGP 292 (381)
T ss_dssp GTEEEEEESSTT
T ss_pred CCeEEEEecCCC
Confidence 899999997754
No 437
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.27 E-value=8.3 Score=38.68 Aligned_cols=100 Identities=14% Similarity=0.269 Sum_probs=59.7
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeeEeecCCCCeeEEEEccCCCEEEEECCeE
Q 008058 118 GGVSAISFATHGSCIYSAG-----------ADG-MVCEIDPLT--GS--LLGKFRASTKGISCMAVSSDGKMLATAAGQL 181 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i 181 (579)
.....++|.++|+.+++.. ..+ .|.+++-.+ |+ ....|...-.....+++.++| ++++....|
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4567889999998766642 223 677776443 33 223444334456889999998 555544666
Q ss_pred EEE-ECCC-------Ceee-EEeec----CCCCEEEEEEecCCCEEEEEe
Q 008058 182 KTF-NCSD-------HKKM-QKFSG----HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 182 ~vw-d~~~-------~~~~-~~~~~----h~~~v~~l~~~~~~~~l~s~s 218 (579)
..| |... .+.+ ..+.. +......+.|.|||.+.++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 655 4421 1112 22322 134477899999998766655
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.18 E-value=1.4 Score=44.41 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=57.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC-eeEEEEccC-----------------CCEEEEEC-
Q 008058 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-ISCMAVSSD-----------------GKMLATAA- 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~p~-----------------g~~l~~~~- 178 (579)
..+.+++.+|++++.++...-|.|.++|+.++..++.+++..+. +.=+..... ..+|+.=.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 34788999999999888888899999999999999888876542 111111111 11233322
Q ss_pred --CeEEEEECCCCeeeEEeec
Q 008058 179 --GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 179 --g~i~vwd~~~~~~~~~~~~ 197 (579)
|.|.||++++|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 8999999999988877753
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.10 E-value=4.8 Score=43.22 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=65.0
Q ss_pred CcEEEEEECCCeEEEEEccC-------C----eE-E------EEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEe
Q 008058 86 SSLLVLGTGGGDVLALAVSA-------G----QL-K------WRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID 145 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~-------~----~~-~------~~~~~~h~~~V~~l~~~--~~~~~l~s~~~dg~v~iwd 145 (579)
...|++|+.||.|.+|.+++ . +. . ..+...-...+++++++ ...++||.++....|.+|-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 67899999999999997732 1 00 0 00111233578999998 7778888888888888875
Q ss_pred CCCC--ceee-EeecCCCCeeEEEEccCC-----C-EEEEEC--CeEEEEEC
Q 008058 146 PLTG--SLLG-KFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC 186 (579)
Q Consensus 146 ~~~~--~~~~-~~~~~~~~v~~l~~~p~g-----~-~l~~~~--g~i~vwd~ 186 (579)
.... +... .-..+...|-+|+|-++. . .+++++ |.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4431 1111 011245578889987643 2 566666 88888877
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.80 E-value=1 Score=41.30 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.0
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008058 125 FATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 125 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 153 (579)
+..++.++++.+.+|.+++||+.+++.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 34478899999999999999999887643
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=91.79 E-value=14 Score=36.39 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=69.1
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCC
Q 008058 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDH 189 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~ 189 (579)
.-...++++.+.++++.++.+ ..|.+++=....|........+ ...+..+.+.|++..++++. |.+. .....+
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G 289 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGG 289 (334)
T ss_pred CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCC
Confidence 344678999999998876655 5676654233444433322211 23578899999988888877 6554 444555
Q ss_pred eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 190 ~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
+.-.... +-......+.|..+++.++++ ..|.|-.|+-
T Consensus 290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~~ 330 (334)
T PRK13684 290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYVG 330 (334)
T ss_pred CCCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEecC
Confidence 4433332 222357788888777776654 5788877753
No 442
>PLN02193 nitrile-specifier protein
Probab=91.69 E-value=19 Score=37.56 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=68.0
Q ss_pred CcEEEEEECC-------CeEEEEEccCCeEEEEecCC-CCC--CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008058 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~-h~~--~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 150 (579)
+.+++.|..+ ..+..||+.+.+.......+ ... ........-++...+.|+.+ ..+..||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4455555542 24788898887654211111 001 11111112245555666644 358889987654
Q ss_pred eeeE--eec-CCC-CeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCE
Q 008058 151 LLGK--FRA-STK-GISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKY 213 (579)
Q Consensus 151 ~~~~--~~~-~~~-~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~ 213 (579)
-... ... ... .-.+++. -++++++.|+ ..+..||+.+.+-.. +.. .... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 3221 100 111 1122222 3566666665 257788887764321 111 0111 12222 25666
Q ss_pred EEEEecCC----CeEEEEEcCCCc
Q 008058 214 VLSSAVGE----RYIALWRTDGVK 233 (579)
Q Consensus 214 l~s~s~~d----~~i~vwd~~~~~ 233 (579)
++.++ .+ ..+.+||+.+.+
T Consensus 332 yviGG-~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 332 WVVYG-FNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEEEC-CCCCccCceEEEECCCCE
Confidence 66665 34 458888988765
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.50 E-value=15 Score=36.15 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (579)
..++|.|||+.|++ ...|.|++++ ..+..
T Consensus 5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp EEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred eEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence 35699999987665 5599999999 44554
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.34 E-value=1 Score=28.67 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.2
Q ss_pred CCEEEEEEccCC---CEEEEEeCCCcEEEEeCCCC
Q 008058 118 GGVSAISFATHG---SCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 118 ~~V~~l~~~~~~---~~l~s~~~dg~v~iwd~~~~ 149 (579)
+.|.++.|+|++ .+|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47888878899999999853
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.23 E-value=3.6 Score=41.46 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=84.9
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEeCCC-CceeeE--eec--CC
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLT-GSLLGK--FRA--ST 159 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~~~dg~v~iwd~~~-~~~~~~--~~~--~~ 159 (579)
|.....++-.|+..|+.+.... -|.. | -+.|.|+.+ .-+.|-++..|.-.|.+- |..+.. ++. ..
T Consensus 486 g~~~~kLykmDIErGkvveeW~-~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWD-LKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred CCCcccceeeecccceeeeEee-cCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 4444568888999999886653 2433 3 566777532 223455566677777763 322222 111 11
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
....|..-..+ -++++++ |.|++||--..+....+++-...|..+..+.+|++++++| ..++-+-|++-.
T Consensus 563 n~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ik 634 (776)
T COG5167 563 NKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPIK 634 (776)
T ss_pred ccccccccccC-ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecccc
Confidence 23344443433 4777777 9999999544344445677788899999999999998886 568888887643
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=3.8 Score=45.51 Aligned_cols=125 Identities=12% Similarity=-0.015 Sum_probs=77.6
Q ss_pred EECCC-eEEEEEccCCeEE----EE------ecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEeecC
Q 008058 92 GTGGG-DVLALAVSAGQLK----WR------LSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKFRAS 158 (579)
Q Consensus 92 ~~~~g-~i~iwd~~~~~~~----~~------~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~-~~~~~~~~ 158 (579)
-+.+| .|..||+.+-... .. +.........++.|+|.-.. .+.+..|+.|++..+.... .+..+. .
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~ 197 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-V 197 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-c
Confidence 33334 4899998753211 01 11122344677888885433 5667788988888765332 222222 3
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEe
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s 218 (579)
....+|++|+|.|+.++.|. |++.-|-. +.+....+.+. ...|.+|.|-....++++-+
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 45789999999999999998 78877754 33333333221 36789999987776766543
No 447
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.15 E-value=2.3 Score=39.35 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=73.4
Q ss_pred EEEeCCCCceeeEeecC-CCCeeEEEEccCCCEEEEEC-----CeEEEEECCC---CeeeEEee---cCCCCEEEEEEec
Q 008058 142 CEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA-----GQLKTFNCSD---HKKMQKFS---GHPGAVRFMTFSD 209 (579)
Q Consensus 142 ~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~---~~~~~~~~---~h~~~v~~l~~~~ 209 (579)
.+||+.+++.. .+... .-...+-.+.|||+++.+|+ ..+++++..+ ........ .....-.+...-|
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 57888877543 22222 22344456779999999988 3688888654 11111110 1112223344557
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-----cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
||+.++.+|....+...|.-....... .....+. ......-.++.- |+|+.++.+..+ -.|||..+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~-~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~--s~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGP-VTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRG--SIIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCc-eeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCC--cEEEeCCCC
Confidence 999999998654455555542221110 0000010 111111223333 899999888765 455687777
Q ss_pred eeeccc
Q 008058 285 EELRNT 290 (579)
Q Consensus 285 ~~~~~~ 290 (579)
+.++..
T Consensus 200 ~v~~~l 205 (243)
T PF07250_consen 200 TVVRTL 205 (243)
T ss_pred eEEeeC
Confidence 655544
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=6.8 Score=39.78 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=52.7
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH 198 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h 198 (579)
.|..+..++.|..++-++.+|.+.++=.+..-.-..++..+..|+|=.+.-+. .+++.+ .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------~ 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------T 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC-------------------C
Confidence 46778889999999988899976665443333333333333334443333222 111111 1
Q ss_pred CCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCc
Q 008058 199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 199 ~~~v~~l~~~~~~---~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.-.+...+|+|++ ..|..-. .|+.+++||+....
T Consensus 165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT 201 (741)
T ss_pred ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence 1224456677754 3455554 48888888887654
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=3.9 Score=46.14 Aligned_cols=146 Identities=14% Similarity=0.230 Sum_probs=82.7
Q ss_pred EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008058 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (579)
Q Consensus 23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd 102 (579)
.+.|+.+.+|+..++.....+.+....+..+..-.+ .+|-+...+ .++++-+.--+|.++-
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I------------------qhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI------------------QHLLVVATPVEIVILG 155 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh------------------heeEEecccceEEEEE
Confidence 345889999999998877778766665554433322 122221111 2233333344445544
Q ss_pred ccCCeEE--EEec------CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCC---c-e----------------e
Q 008058 103 VSAGQLK--WRLS------DCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTG---S-L----------------L 152 (579)
Q Consensus 103 ~~~~~~~--~~~~------~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~--~~~---~-~----------------~ 152 (579)
+.-++.. ...+ .-....|+|+....+|+.|++| .||.|+-.-. .+| + + +
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 3321110 0001 1124568899988888776665 6665544322 111 1 1 1
Q ss_pred eEee-cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008058 153 GKFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (579)
Q Consensus 153 ~~~~-~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~ 188 (579)
-.+. .+..+|..+++...-.++.+=+ |.|.+||+..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1122 3566999999988777777766 9999999976
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.09 E-value=23 Score=35.81 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----eeeEeecC--CCCeeEEEEccCCCEEEEEC-CeEEEEECC
Q 008058 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAS--TKGISCMAVSSDGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~--~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~ 187 (579)
....++++.|.+++..++++ .+|.+. |....++ ........ ...+..+.+.+++..+++|. |.+... ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence 34578999999998877655 666653 3334443 22222211 23588999999999999998 666555 34
Q ss_pred CCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 188 ~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
.|+.-.... .-......+.|.++++-++++ .+|.|--|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence 454433322 234567899998877766664 58877654
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.08 E-value=23 Score=35.79 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=75.8
Q ss_pred EEEEEccCCCEEEEEeCCCcE-EEEeCCCCcee-eEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe-----e
Q 008058 121 SAISFATHGSCIYSAGADGMV-CEIDPLTGSLL-GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----K 191 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~dg~v-~iwd~~~~~~~-~~~-~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~-----~ 191 (579)
..+..+++|.+++.+. .|.+ +-|| .|... ... ......++++.+.+++.+++++. |.+. +....++ .
T Consensus 242 ~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence 3445667776666553 4443 3344 23321 111 22344789999999999998888 5543 3344443 1
Q ss_pred eEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEE
Q 008058 192 MQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 192 ~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (579)
...... -...+..+.|.+++..++++ .+|.+.... ..++.-. .......-...+..+.|. ++ ....+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s~-D~G~tW~--~~~~~~~~~~~ly~v~f~-----~~-~~g~~ 386 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRST-DGGKSWK--RDKGADNIAANLYSVKFF-----DD-KKGFV 386 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEeC-CCCccee--EccccCCCCcceeEEEEc-----CC-CceEE
Confidence 222221 12348889999888766654 478665553 4443210 111001111223345553 33 45566
Q ss_pred EEcCCeEEEE
Q 008058 270 ISETGVCYIW 279 (579)
Q Consensus 270 ~~~dg~i~iw 279 (579)
.+.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 6777887665
No 452
>PLN02153 epithiospecifier protein
Probab=89.92 E-value=22 Score=35.25 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=50.5
Q ss_pred CcEEEEEECC-------CeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCC
Q 008058 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~ 148 (579)
+.++++|+.+ .++.+||+.+.+.......+... ....+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4455555542 35889998887654221111101 1222333 45566666643 3578899876
Q ss_pred Cceee--Eeec---CCCCeeEEEEccCCCEEEEEC----C---------eEEEEECCCCe
Q 008058 149 GSLLG--KFRA---STKGISCMAVSSDGKMLATAA----G---------QLKTFNCSDHK 190 (579)
Q Consensus 149 ~~~~~--~~~~---~~~~v~~l~~~p~g~~l~~~~----g---------~i~vwd~~~~~ 190 (579)
.+-.. .+.. ........+..-++++++.|+ + .+.+||..+.+
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 53221 1110 111112122223566666665 1 46788887654
No 453
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.36 E-value=1.8 Score=26.89 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=23.2
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCC--CeEEEE
Q 008058 195 FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW 227 (579)
Q Consensus 195 ~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vw 227 (579)
+......-....|+|||++|+.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556677889999999998888666 666555
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.27 E-value=1.2 Score=28.33 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=24.9
Q ss_pred CcccceEEEEccC-C--CEEEEEeCCCcEEEEECCCC
Q 008058 4 SNIRDILTSFSPA-L--DYFAICSGDARIKIWDTLKG 37 (579)
Q Consensus 4 ~~V~~~~~~fs~d-g--~~las~s~dg~i~vwd~~~~ 37 (579)
++||++ .|||+ + ++|+..-.-|.|.|+|++++
T Consensus 1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 457666 99984 4 58888877899999999853
No 455
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.99 E-value=43 Score=37.40 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=76.3
Q ss_pred cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCC----------CCEEEEEEccCCC
Q 008058 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHP----------GGVSAISFATHGS 130 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~----------~~V~~l~~~~~~~ 130 (579)
+.....++++|.+ ...+|+....|.-.||++... .........+. +.-..+.|.++-+
T Consensus 145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence 3456667777765 558999999999999999211 11111111122 2334778888877
Q ss_pred EEEEEeCCCcEEEEeCCCCceee-Eee-cCCCCeeEEEEccC--CCEEEEECCeEEEEECCC
Q 008058 131 CIYSAGADGMVCEIDPLTGSLLG-KFR-ASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD 188 (579)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~~~-~~~-~~~~~v~~l~~~p~--g~~l~~~~g~i~vwd~~~ 188 (579)
.|+.++. ..+.++|+.+..... ... .....|..+.-+|+ +..++..+..|...++..
T Consensus 217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8887754 568899998775533 222 23347888888887 566666778888888876
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.94 E-value=2.6 Score=38.60 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=44.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEe------cC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
+.++++.+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+++- .+|..+.||..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 788999999999999999998875332 11 244567777777777666554 35677777754
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.73 E-value=6.5 Score=41.94 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=46.6
Q ss_pred CcEEEEEECCCeEEEEEccC----CeEEEE-ecCC--------------------CCCCEEEEEEcc----CCCEEEEEe
Q 008058 86 SSLLVLGTGGGDVLALAVSA----GQLKWR-LSDC--------------------HPGGVSAISFAT----HGSCIYSAG 136 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~----~~~~~~-~~~~--------------------h~~~V~~l~~~~----~~~~l~s~~ 136 (579)
...++++..||.+....... +..... .... ....+..+++++ +..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 66788899999988877664 221111 1111 123456666666 677899999
Q ss_pred CCCcEEEEeCCCCceeeEeecC
Q 008058 137 ADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
.|+++|+||+.+++++.+....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999998776543
No 458
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.24 E-value=29 Score=37.13 Aligned_cols=173 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.| +.+.|.++++.+++...+|.|.+||...+.....-+..........|+ .+...+.....
T Consensus 129 ~~kv--v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~-------------- 191 (670)
T PF10395_consen 129 DDKV--VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENG-------------- 191 (670)
T ss_pred ccce--EEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccC--------------
Q ss_pred ccCCcEEEEEEC-CCe---EEEEEc-cCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 83 KLGSSLLVLGTG-GGD---VLALAV-SAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 83 ~~~~~~l~~~~~-~g~---i~iwd~-~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
..++++-+. ++. .+++.+ .....+..+. .-+........|.-+...|+.= .+++|.+|++...+..+++
T Consensus 192 ---~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 192 ---KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred ---CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEE
Q ss_pred ecC-----C-CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee
Q 008058 156 RAS-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS 196 (579)
Q Consensus 156 ~~~-----~-~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~ 196 (579)
.-. . ..+.++.--...+.|++..+.|++.|+.-...+.++.
T Consensus 268 ~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 268 SLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
No 459
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.08 E-value=28 Score=34.13 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCcee---eEeecCCCCe--eEEEEccCCCEEEEEC-------CeEEEEECCCCe
Q 008058 128 HGSCIYSAGAD-----GMVCEIDPLTGSLL---GKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (579)
Q Consensus 128 ~~~~l~s~~~d-----g~v~iwd~~~~~~~---~~~~~~~~~v--~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~ 190 (579)
++..++.|+.+ ..+..+|+.+.+-. ..+..-..+. .+++. -++++.+.|+ ..+..||..+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 35777787665431 1211111111 12222 2567777665 368889988764
Q ss_pred ee--EEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCc
Q 008058 191 KM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK 233 (579)
Q Consensus 191 ~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~ 233 (579)
-. ..+... ..........+++..+.+| .++ .+.+||+.+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence 32 222211 1112222334566666666 343 24677877654
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.88 E-value=3.6 Score=25.79 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=28.3
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 127 THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 127 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
|++++++++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777766655 5789999999988888877653 33345554
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=49 Score=35.59 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=73.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~ 160 (579)
..-|+....+|.+++|++....... .-.......|..+.|..+|-.+.+ .+|++.+-+-......++++. ..-
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~ 171 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNEL 171 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccC
Confidence 4568899999999999986443321 111222345666666666644444 455555544222222223322 111
Q ss_pred CeeEEEEccCCC---EEEEEC---C-eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 161 GISCMAVSSDGK---MLATAA---G-QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~---~l~~~~---g-~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
+-+|-...+++. .++-.. + .+..-+....+.. .+....+.+..+..||+.++|+--. .+|.|.+-+.+..+
T Consensus 172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH-ALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ 249 (829)
T ss_pred CCcceeEecCCCcceeEEeechhhhhcccceeccccccc-ccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence 212322223221 111111 0 1111111122221 2222235678899999999988876 68888888776654
Q ss_pred c
Q 008058 234 K 234 (579)
Q Consensus 234 ~ 234 (579)
.
T Consensus 250 ~ 250 (829)
T KOG2280|consen 250 I 250 (829)
T ss_pred h
Confidence 3
No 462
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.69 E-value=67 Score=37.00 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=18.7
Q ss_pred CCCCeeEEEEccCCCEEEEECCeEEE
Q 008058 158 STKGISCMAVSSDGKMLATAAGQLKT 183 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~g~i~v 183 (579)
+-..+.+++.+|||..+++-.|.++|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 44577899999999888765554443
No 463
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.39 E-value=31 Score=32.90 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=101.1
Q ss_pred CcEEEEEECCCeEEEEEcc------CC-eEEEEecC--C--CCCCEEEEEEccCCC------------EEEEEeCCCcEE
Q 008058 86 SSLLVLGTGGGDVLALAVS------AG-QLKWRLSD--C--HPGGVSAISFATHGS------------CIYSAGADGMVC 142 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~------~~-~~~~~~~~--~--h~~~V~~l~~~~~~~------------~l~s~~~dg~v~ 142 (579)
+.+-++....+...+||.. .. .++..+.. + .....+.+.|+.... .++.++.||+|.
T Consensus 34 ~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTis 113 (336)
T TIGR03118 34 GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLS 113 (336)
T ss_pred CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEE
Confidence 4455666667789999986 12 22323321 1 224577888875322 367788999999
Q ss_pred EEeCCCCce-----eeEeecC-CC-CeeEEEEc--cCCCEEEEEC---CeEEEEECCCCeeeE--Eeec-----CCCC--
Q 008058 143 EIDPLTGSL-----LGKFRAS-TK-GISCMAVS--SDGKMLATAA---GQLKTFNCSDHKKMQ--KFSG-----HPGA-- 201 (579)
Q Consensus 143 iwd~~~~~~-----~~~~~~~-~~-~v~~l~~~--p~g~~l~~~~---g~i~vwd~~~~~~~~--~~~~-----h~~~-- 201 (579)
-|...-+.. +..+... .+ -...+++. ..+.+|..+. ++|.|||-.=.+... .|.. ...+
T Consensus 114 aW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn 193 (336)
T TIGR03118 114 GWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN 193 (336)
T ss_pred eecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcc
Confidence 998643322 1222211 12 23345554 3477888887 899999864322110 1110 0011
Q ss_pred ---------EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCce--eeEeEEecCCcc-cCCCcEEEE
Q 008058 202 ---------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGV-DDAGLYVLA 269 (579)
Q Consensus 202 ---------v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~s 269 (579)
|+-..-.++++.=+.+. .-|.|.+||+...-. ..+.+... .-..+...+..+ ...|..|+-
T Consensus 194 Iqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~------~r~as~g~LNaPWG~a~APa~FG~~sg~lLVG 266 (336)
T TIGR03118 194 VQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLL------RRVASSGRLNAPWGLAIAPESFGSLSGALLVG 266 (336)
T ss_pred eEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEE------EEeccCCcccCCceeeeChhhhCCCCCCeEEe
Confidence 11111122222222222 457899999876532 22221110 111112211111 134565555
Q ss_pred EEcCCeEEEEECCCceeeccc
Q 008058 270 ISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~ 290 (579)
--.||+|..||..+++.+..+
T Consensus 267 NFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 267 NFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred ecCCceeEEecCCCCceeeee
Confidence 556999999999988876544
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.35 E-value=25 Score=31.73 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=63.9
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCeeEEEEccCCCEEEEEC-----C---eEEEE-ECCC----CeeeE-
Q 008058 130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF-NCSD----HKKMQ- 193 (579)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g---~i~vw-d~~~----~~~~~- 193 (579)
+.|+.+...+.|.+|++. ..+...+|.. -+.|..+.++..|+++++-- . .+++| +.+. .++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455554667789999988 3355666664 37899999999999999864 3 56665 2221 12222
Q ss_pred EeecC---------------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 194 ~~~~h---------------------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.+-|| ..++.+++..|....|+.++ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 22222 23456777777544555554 6789999876543
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.86 E-value=51 Score=36.83 Aligned_cols=112 Identities=10% Similarity=-0.009 Sum_probs=73.8
Q ss_pred CCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-----eeeEeecCCC----------CeeEEEEccCCCEEEEEC-Ce
Q 008058 118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRASTK----------GISCMAVSSDGKMLATAA-GQ 180 (579)
Q Consensus 118 ~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~----------~v~~l~~~p~g~~l~~~~-g~ 180 (579)
.+..+++|+| +.+.|+.....|.-.+||+..+. .........+ .-..+.|.++-+.|+.++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 3678999999 44579999999999999992111 1111111111 234788988888888888 89
Q ss_pred EEEEECCCCeeeEEe--ecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCC
Q 008058 181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 181 i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
+.++|+++......+ ......|..+.-+|. +..|+-+ ...|...++...
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence 999999987553212 234466888887776 3333332 356777787763
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=25 Score=31.39 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=78.0
Q ss_pred EEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEE--C-CeEEEEECCCCeeeEEee
Q 008058 122 AISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA--A-GQLKTFNCSDHKKMQKFS 196 (579)
Q Consensus 122 ~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~--~-g~i~vwd~~~~~~~~~~~ 196 (579)
++.+. +|.++.+.+. ...|++||+.+|+.+..-+-....+..--...-|..+..- . |.-..||.++-+++..+.
T Consensus 50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred ceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 34443 4556666654 3479999999998776543221122111111123333322 2 777888888877776654
Q ss_pred cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeE
Q 008058 197 GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (579)
Q Consensus 197 ~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 276 (579)
..+.=..++ .|+..|+.+. +..+++.-|..+-.......+.--..+...++-.-+ -+|...|-.=.+..|
T Consensus 129 -y~GeGWgLt--~d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~------VdG~lyANVw~t~~I 198 (262)
T COG3823 129 -YEGEGWGLT--SDDKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW------VDGELYANVWQTTRI 198 (262)
T ss_pred -cCCcceeee--cCCcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceee------eccEEEEeeeeecce
Confidence 233334443 4455555543 355666666655433321111111111112222222 255555555555566
Q ss_pred EEEECCCceeecc
Q 008058 277 YIWYGQNIEELRN 289 (579)
Q Consensus 277 ~iwd~~~~~~~~~ 289 (579)
-.-+.++|+.+..
T Consensus 199 ~rI~p~sGrV~~w 211 (262)
T COG3823 199 ARIDPDSGRVVAW 211 (262)
T ss_pred EEEcCCCCcEEEE
Confidence 6666666665543
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.74 E-value=0.15 Score=50.64 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=93.6
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+...|-|.+.-++.++.+..+..||-. |+...+.. .....-.++|... +..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------------------~tg~aldm~wDke--------gdv 88 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------------------PTGKALDMAWDKE--------GDV 88 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------------------CchhHhhhhhccc--------cch
Confidence 3456788877668888888888889854 44333221 1112223455442 145
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
.++.+-..+.+.+||+.+.... ++..+-+..-.-+.|++-+..++.+...|.+.+++..+.+.+-..-.|...++++++
T Consensus 89 lavlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred hhhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 5777888899999999865432 111111222222678888888888889999999998776665555448889999999
Q ss_pred ccCCCEEEEEC
Q 008058 168 SSDGKMLATAA 178 (579)
Q Consensus 168 ~p~g~~l~~~~ 178 (579)
.+.+..+..+.
T Consensus 168 ~lEd~vil~dc 178 (615)
T KOG2247|consen 168 TLEDYVILCDC 178 (615)
T ss_pred cccceeeecCc
Confidence 99876665554
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.72 E-value=13 Score=39.59 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=54.4
Q ss_pred CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
-.|+||+. +|+.+.++....+.+-.+.|+.+...++. . .||++.+|++........ .+..-.....+..|..|.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~-k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~-- 137 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-Q-KDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFH-- 137 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-e-ccceEEEeecchhhhccc-ccccccccCceeEEEEec--
Confidence 56888886 56666665544558889999988766554 4 799999999977654321 011111233455666663
Q ss_pred cccCCCcEEEEEEcCCeEEEE
Q 008058 259 GVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 259 ~~~~~~~~l~s~~~dg~i~iw 279 (579)
+| +++-..+|++.+-
T Consensus 138 ----~G--Vavlt~~g~v~~i 152 (829)
T KOG2280|consen 138 ----NG--VAVLTVSGQVILI 152 (829)
T ss_pred ----Cc--eEEEecCCcEEEE
Confidence 44 3444455655544
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.45 E-value=4.1 Score=25.56 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=26.9
Q ss_pred cCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEE
Q 008058 169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 169 p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 207 (579)
|+++.++++. ++|.++|..+++.+..+..... ...+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5778777765 7999999999888887765322 234444
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.26 E-value=20 Score=29.60 Aligned_cols=112 Identities=7% Similarity=0.007 Sum_probs=61.8
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCC--------eeeEEeecCCCCEEEEEEec-----CCCEEEEEecCCCeEEEEEcC
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDH--------KKMQKFSGHPGAVRFMTFSD-----NGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~~d~~i~vwd~~ 230 (579)
.|......|+++. |.|.|++.... ..+..+. -...|++++-.+ +...|+.++ ...+-.||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt--~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT--QTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--cceEEEEEcc
Confidence 4555555666665 89999976532 2333343 456677775443 234566664 6789999998
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
..... ....+......+.+-.+. ....-++..+.+..|.-||.+-.+...
T Consensus 82 ~N~d~---Fyke~~DGvn~i~~g~~~-----~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 82 NNSDL---FYKEVPDGVNAIVIGKLG-----DIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cCchh---hhhhCccceeEEEEEecC-----CCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 87644 112222222333333332 223334444555677777766555443
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.94 E-value=32 Score=32.85 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=56.7
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeec-----CCCCeeE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRA-----STKGISC 164 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~ 164 (579)
..|.+||..+.+.. .+-.+-.+.|+++.|..+.+.++.|. ....+..||+.+.. ...+.. -.++|..
T Consensus 16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 34899998887765 33344567899999986666666664 35568889986553 333333 1357777
Q ss_pred EEEcc-CCCEEE-EEC-----CeEEEEECCCCe
Q 008058 165 MAVSS-DGKMLA-TAA-----GQLKTFNCSDHK 190 (579)
Q Consensus 165 l~~~p-~g~~l~-~~~-----g~i~vwd~~~~~ 190 (579)
+.+.. |+..+. .|. ..|..||-.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 77743 443344 332 345666544433
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.63 E-value=71 Score=34.71 Aligned_cols=80 Identities=10% Similarity=0.093 Sum_probs=48.4
Q ss_pred CCCEEEEEEe--cCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCe
Q 008058 199 PGAVRFMTFS--DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGV 275 (579)
Q Consensus 199 ~~~v~~l~~~--~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~ 275 (579)
...+++++++ ...+++|+++ ....|.||-........ ....... ...-+-++.|-+...+++|. +|++++-.|.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSs-Ns~~VTVFaf~l~~~r~-~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSS-NSQEVTVFAFALVDERF-YHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred CCceeEEEEEecCcceEEEEec-CCceEEEEEEecccccc-ccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 3468899998 7777777665 67778887665532110 0111111 22334455555554445565 7888888999
Q ss_pred EEEEEC
Q 008058 276 CYIWYG 281 (579)
Q Consensus 276 i~iwd~ 281 (579)
+.+|++
T Consensus 240 v~~~~I 245 (717)
T PF08728_consen 240 VWTFKI 245 (717)
T ss_pred EEEEEE
Confidence 988877
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.62 E-value=9.6 Score=33.45 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=18.7
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEE
Q 008058 161 GISCMAVSSDGKMLATAAGQLKTFN 185 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~g~i~vwd 185 (579)
...+++||.||++.++++..|+|.+
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~ 30 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILD 30 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEe
Confidence 3467888888877777777788873
No 474
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.57 E-value=32 Score=33.85 Aligned_cols=109 Identities=11% Similarity=0.173 Sum_probs=57.8
Q ss_pred CeeEEEEccCCCEEEEEC-CeEEEEECCCCee---eEEe----ecCCCCEEEEEEecC---CCEEEEEecCC--------
Q 008058 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF----SGHPGAVRFMTFSDN---GKYVLSSAVGE-------- 221 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~---~~~~----~~h~~~v~~l~~~~~---~~~l~s~s~~d-------- 221 (579)
..++|+|.|||+++++-- |.|++++ ..+.. +..+ .........++++|+ ..+|.......
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 357899999999988877 9999999 44433 3332 223456789999994 23333333211
Q ss_pred CeEEEEEcCCC--ccccceeEE-eeec---CceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 222 RYIALWRTDGV--KKQSASCVL-AMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 222 ~~i~vwd~~~~--~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
..|.-|..... .....+.+. .... .......+.|. |||.+.++.+..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-----pDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-----PDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE------TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-----CCCcEEEEeCCCCC
Confidence 24555555443 111111121 1111 22333446666 88876666666544
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.55 E-value=52 Score=33.08 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=9.9
Q ss_pred eEEEEEccCCeEE
Q 008058 97 DVLALAVSAGQLK 109 (579)
Q Consensus 97 ~i~iwd~~~~~~~ 109 (579)
.+..||+.+++..
T Consensus 107 ~v~~YD~~~n~W~ 119 (376)
T PRK14131 107 DVYKYDPKTNSWQ 119 (376)
T ss_pred cEEEEeCCCCEEE
Confidence 4888998887654
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=43 Score=38.41 Aligned_cols=72 Identities=8% Similarity=-0.000 Sum_probs=42.3
Q ss_pred CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 198 h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 277 (579)
+..++.+..+.......+.. .-+.+-+|+........ .+...+... . +++..++++..||.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~-----~~~~~~v~~h~Dgs~~ 259 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGF--NRGLVVIKDRASKYVQS---AYLPNGQLE-------S-----RDGSHFVSYHTDGSYA 259 (993)
T ss_pred cccccceeeeecCCCcceee--eeeeeeehhcccccchh---hcccccccC-------c-----cCCceEEEEEecCCEE
Confidence 44555555555444444433 35667777655443221 011111111 3 7889999999999999
Q ss_pred EEECCCcee
Q 008058 278 IWYGQNIEE 286 (579)
Q Consensus 278 iwd~~~~~~ 286 (579)
+||...+..
T Consensus 260 fWd~s~g~~ 268 (993)
T KOG1983|consen 260 FWDVSSGKL 268 (993)
T ss_pred eeecCCCce
Confidence 999988754
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.95 E-value=94 Score=34.99 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=90.5
Q ss_pred EEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCE-EE-EEe-----------CCCcEEEEeCC-CCceeeEeec--C
Q 008058 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSC-IY-SAG-----------ADGMVCEIDPL-TGSLLGKFRA--S 158 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~-l~-s~~-----------~dg~v~iwd~~-~~~~~~~~~~--~ 158 (579)
|++.|..+++.+..+..+.. -.|.++.|+..... +. .|. .+|.++.|++- .|+.+.-+.. -
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 88888888877655532222 24666677654333 33 221 23446666643 3342222211 1
Q ss_pred CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEcCCCcc
Q 008058 159 TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~-i~vwd~~~~~~ 234 (579)
.+.| .+..|-+.++++|- ..+++||+-..++++... .....|+.+.+. +..++.+-..++. ...|+-...+.
T Consensus 935 ~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 935 PGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred Cccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 2244 34556555666665 799999998877765543 234556777664 4456666544442 33444444332
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
. ++.-+.-...+....+ -|...++.+..=|.+.+-.+
T Consensus 1011 ~----~fadD~~pR~Vt~~~~------lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 I----VFADDPVPRHVTALEL------LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred E----EEeCCCccceeeEEEE------ecCCceeeccccCcEEEEEC
Confidence 2 2222222333444444 35567777777777777654
No 478
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.85 E-value=80 Score=36.39 Aligned_cols=139 Identities=10% Similarity=0.159 Sum_probs=82.5
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--------ccCCCEEEEEeCCCcEEEEeCC----CCce-----eeE
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--------ATHGSCIYSAGADGMVCEIDPL----TGSL-----LGK 154 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~l~s~~~dg~v~iwd~~----~~~~-----~~~ 154 (579)
.+.|..+.+|+..++.....+ .+-...|..+.. .|.=++++.-+.--.|.++-+. ++.. ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 356788999999986544333 344444554432 3333343333334445554332 1111 012
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC-CeEEEE--ECCCC---e-e----------------eEEee-cCCCCEEEEEEecC
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA-GQLKTF--NCSDH---K-K----------------MQKFS-GHPGAVRFMTFSDN 210 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vw--d~~~~---~-~----------------~~~~~-~h~~~v~~l~~~~~ 210 (579)
+...+..|+|+....+|+.+.+|- |.|+=. ....+ + + +..+. .+..+|..+.+...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 222345789999889999999987 744322 22111 1 1 11233 56789999999887
Q ss_pred CCEEEEEecCCCeEEEEEcCCC
Q 008058 211 GKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
...+.+-+ ..++|.+|++...
T Consensus 254 R~IlY~ls-ek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLS-EKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeec-cCceEEEEEccCC
Confidence 77777776 7899999999873
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.04 E-value=54 Score=31.52 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=75.4
Q ss_pred cEEEEeCCCCceeeEeecC------CCCeeEEEEccCC-----CEEEEEC---CeEEEEECCCCeeeEEeecCC------
Q 008058 140 MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDG-----KMLATAA---GQLKTFNCSDHKKMQKFSGHP------ 199 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~g-----~~l~~~~---g~i~vwd~~~~~~~~~~~~h~------ 199 (579)
++.+||+.+++.++++.-+ ...+..+.+.... .++..++ +.|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5788999999888876532 3467778887622 3555554 689999999987665543221
Q ss_pred -------------CCEEEEEEec---CCCEEEEEecCCCeEEEEEcCCC-----cccc----ceeEEeeecCceeeEeEE
Q 008058 200 -------------GAVRFMTFSD---NGKYVLSSAVGERYIALWRTDGV-----KKQS----ASCVLAMEHPAVFMDCRC 254 (579)
Q Consensus 200 -------------~~v~~l~~~~---~~~~l~s~s~~d~~i~vwd~~~~-----~~~~----~~~~~~~~~~~~~~~~~~ 254 (579)
..+..++.+| +++.|........ ++|.+.+. .... ...+..+...........
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 2255555554 5566666543222 34433221 1100 001112222122334455
Q ss_pred ecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 255 IDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
.+ ++|...++--..+.|..|+..+
T Consensus 193 ~D-----~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 193 ID-----PNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EE-----TTTEEEEEECCCTEEEEEETTT
T ss_pred EC-----CCCcEEEecCCCCeEEEEeCCC
Confidence 54 7788887878888888898654
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.88 E-value=7.3 Score=38.78 Aligned_cols=144 Identities=20% Similarity=0.327 Sum_probs=81.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEE-EecCCCCC----CEE-EEEEccCCCEEEEEeCCCcEEEE-eCCCCc-----eee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPG----GVS-AISFATHGSCIYSAGADGMVCEI-DPLTGS-----LLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~-~~~~~h~~----~V~-~l~~~~~~~~l~s~~~dg~v~iw-d~~~~~-----~~~ 153 (579)
++.+++-+. .++.++++.+..... ++.....+ .|+ ++..-..|..+..++.||.|.-| |.+.+. .++
T Consensus 232 g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R 310 (733)
T COG4590 232 GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIR 310 (733)
T ss_pred CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeee
Confidence 666666665 678888876654321 12111111 122 12222345668889999999888 554332 223
Q ss_pred EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.++-...++..+.-..+.+-+++-+ |++.++.....+.+. +..-...+..++++|++.++++- +.|.++++.+++
T Consensus 311 ~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~N 387 (733)
T COG4590 311 NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLEN 387 (733)
T ss_pred ccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee--cCCceEEEEecC
Confidence 3332333444443333344455555 777777654444332 22223356678999999999874 578899999887
Q ss_pred Cc
Q 008058 232 VK 233 (579)
Q Consensus 232 ~~ 233 (579)
..
T Consensus 388 r~ 389 (733)
T COG4590 388 RN 389 (733)
T ss_pred CC
Confidence 64
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.52 E-value=78 Score=33.05 Aligned_cols=102 Identities=12% Similarity=0.194 Sum_probs=51.6
Q ss_pred CeEEEEEccCCeEEEEec-CCC-CCCEEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCceeeEeec--C
Q 008058 96 GDVLALAVSAGQLKWRLS-DCH-PGGVSAISFATHGSCIYSAGA-------------DGMVCEIDPLTGSLLGKFRA--S 158 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~-~~h-~~~V~~l~~~~~~~~l~s~~~-------------dg~v~iwd~~~~~~~~~~~~--~ 158 (579)
+.+..+|+. |+.+.... .+. ...-.++.+-|+|++|+.+.. ...|..+| .+|+.+..+.. |
T Consensus 167 ~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ 244 (477)
T PF05935_consen 167 NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDH 244 (477)
T ss_dssp TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGT
T ss_pred CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHh
Confidence 778888875 44433321 110 112356778899999887762 12366667 67776665431 1
Q ss_pred -----------------------C--CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC
Q 008058 159 -----------------------T--KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP 199 (579)
Q Consensus 159 -----------------------~--~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~ 199 (579)
. --++++.+.+ ++.+++++- ..|...|.++++....+..|.
T Consensus 245 ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 245 LDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp S-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 0 1467888888 555555554 578888877777776665544
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.43 E-value=0.23 Score=49.31 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=91.1
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeec-CCCCeeE
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRA-STKGISC 164 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~ 164 (579)
.-+++++.+..+..||-...... .. ..++...+++|..+|..+ +.+-..+.+++||+.+... +.+.. ....-.-
T Consensus 47 ~nlavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sl 122 (615)
T KOG2247|consen 47 HNLAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL 122 (615)
T ss_pred CceehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHH
Confidence 33888888888999986543332 22 234566778888877764 4455778999999865421 11111 1111122
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
+.|++.+..++.+. |.+.+++..+.+.+-..-.|...++++++.+.+. .+.++ .|..+.+-
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~d-cd~~L~v~ 185 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCD-CDNTLSVT 185 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecC-cHHHHHHh
Confidence 78899888888888 9999999988777666555999999999999874 44444 46555443
No 483
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.40 E-value=52 Score=30.91 Aligned_cols=133 Identities=12% Similarity=0.167 Sum_probs=76.1
Q ss_pred eEEEEEccCCeEE-EEecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCE
Q 008058 97 DVLALAVSAGQLK-WRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~-~~~~~~h-~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~ 173 (579)
.|.-.|.++.+.. ..+...| ........|.+.|+.-+++. .|.---.|..+ ..+..|....+ ..+.|+..|||..
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsv 202 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSV 202 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcE
Confidence 4555555555443 1222222 35678889999998877774 33222223322 23444544433 6688999999998
Q ss_pred EEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 174 LATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 174 l~~~~--g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
-++.- +.|-..|..++.. ..+. .....-..+--+|.|+.-++.. ..+.+..+|.....
T Consensus 203 wyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~s 265 (353)
T COG4257 203 WYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTS 265 (353)
T ss_pred EEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccccc
Confidence 88744 6677767665521 2221 2122334455567777766654 57778888766543
No 484
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.59 E-value=79 Score=31.97 Aligned_cols=120 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++|+ ++.||+|.+.+|.--.|.+|.+++....+....+. +. +......+-...|..
T Consensus 65 d~G~I~--SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~-------------ck~k~~~IlGF~W~~------ 122 (657)
T KOG2377|consen 65 DKGEIK--SIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QE-------------CKTKNANILGFCWTS------ 122 (657)
T ss_pred CCCcee--EEEeccCcceEEEEecCceEEEEecCCCchhhHHH-HH-------------hccCcceeEEEEEec------
Confidence 457894 45999999999999999999999875433322211 00 011112233445544
Q ss_pred cccCCcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCC
Q 008058 82 RKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTG 149 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~ 149 (579)
..-++..+..|. ++--+...... ++.+.|...|.-..|.++.+.++-++ ..+++.=+-++++
T Consensus 123 ----s~e~A~i~~~G~e~y~v~pekrsl--RlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 123 ----STEIAFITDQGIEFYQVLPEKRSL--RLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ----CeeEEEEecCCeEEEEEchhhhhh--hhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 333566555553 33333333322 34466888899999999887744433 2333333444443
No 485
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.88 E-value=29 Score=34.80 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=88.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++|..+ -..|||+.+..-+. .++.|+++.+...... +-.... +.....++. ...-
T Consensus 221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp-------------g~~~~~Vte--------~l~l 276 (733)
T COG4590 221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP-------------GDSRHQVTE--------QLYL 276 (733)
T ss_pred cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC-------------CchHHHHHH--------HHHH
Confidence 345445 67899997776654 5788888765443211 110000 000000000 0000
Q ss_pred ccCCcEEEEEECCCeEEEE-EccCCeEE--EE--ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 83 KLGSSLLVLGTGGGDVLAL-AVSAGQLK--WR--LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iw-d~~~~~~~--~~--~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
..++..++++..||-|.-| |+..+... .. ..+-...++..+.-..+.+-+++-+.+|++..+.-...+.+- +..
T Consensus 277 L~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~ 355 (733)
T COG4590 277 LSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FER 355 (733)
T ss_pred HhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhh
Confidence 0135668889999987766 44433211 00 001111233333322234457777888888887654333322 222
Q ss_pred CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeee
Q 008058 158 STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM 192 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~ 192 (579)
--..+.-+++||++.++++-. |.|+++.+++..+-
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hhcCcceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 223567789999999999988 99999998775443
No 486
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.40 E-value=74 Score=32.60 Aligned_cols=32 Identities=6% Similarity=0.175 Sum_probs=24.5
Q ss_pred CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 200 ~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
..|.+++..+..+.+++.. .++.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~-~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLT-SDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEE-SSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEe-CCCcEEEEEEeCC
Confidence 3488999998888888887 6999999999863
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.99 E-value=84 Score=31.46 Aligned_cols=154 Identities=20% Similarity=0.302 Sum_probs=86.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
+|+ +..++.+|.+..+|..+|+....+.... . ..+..+ .+. ....++.++.+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---~~~~~~-----------~v~------------~~~~v~~~s~~ 162 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S---PYYASP-----------PVV------------GDGTVYVGTDD 162 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCC-C---eEEecC-----------cEE------------cCcEEEEecCC
Confidence 665 6677778888889988899888776433 0 111110 000 13445555578
Q ss_pred CeEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCC-CeeE---E-E
Q 008058 96 GDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTK-GISC---M-A 166 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~-~v~~---l-~ 166 (579)
|.+...|..+|+..+.....- ...+..--...++ .++.+.. ++.+.-.|..+|......+.+.. .-.. . .
T Consensus 163 g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~ 241 (370)
T COG1520 163 GHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPA 241 (370)
T ss_pred CeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccccccc
Confidence 999999999998877653221 1111111112233 4555555 66788888888887666432111 1000 1 1
Q ss_pred E-----ccCCCEEEEEC-CeEEEEECCCCeeeEEeecC
Q 008058 167 V-----SSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH 198 (579)
Q Consensus 167 ~-----~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h 198 (579)
+ .-++..+..+. +.+...|..+++.+.++...
T Consensus 242 ~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 242 VDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 1 11233222222 67888899999888877653
No 488
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.83 E-value=3.5 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=16.6
Q ss_pred ecCCCCcEEEeecCCcceeeccccce
Q 008058 346 LVNSGEDINLNCSQDGVLLPMSQSLL 371 (579)
Q Consensus 346 ~~h~~~v~~~~~s~dg~~l~~s~s~d 371 (579)
.-.........|||||+.|..++..+
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred ccCCccccCEEEecCCCEEEEEecCC
Confidence 33445678889999999985554444
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=76.69 E-value=22 Score=27.08 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=29.2
Q ss_pred EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 135 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
+..+|.+..||+.+++....+.+ -...+.+++++|+..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 34568899999988875444443 23568899999999888876
No 490
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=75.76 E-value=94 Score=34.66 Aligned_cols=88 Identities=15% Similarity=0.008 Sum_probs=54.9
Q ss_pred CccceEEeeecccccccccCCcEEEEEECC----CeEEEEEccCCeE-EEEec------------------------CCC
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQL-KWRLS------------------------DCH 116 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~----g~i~iwd~~~~~~-~~~~~------------------------~~h 116 (579)
...+.+.|.+..++ +......+++.+.. ..|.-|.+..... +...+ -..
T Consensus 181 ~~LthL~ils~~~~--~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~ 258 (753)
T PF11635_consen 181 YQLTHLEILSPTPD--KDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITL 258 (753)
T ss_pred ccceeEEEeccCCC--CCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEeccccc
Confidence 46778888886555 11224455444433 3499999875321 11110 011
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
.+.|.++....-+..++.+..||+|.++|-.+.+.+...
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 245778877777888999999999999998776554433
No 491
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=75.61 E-value=85 Score=30.82 Aligned_cols=102 Identities=16% Similarity=0.335 Sum_probs=63.2
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCc------EEEEeCCC--C--ceee-----EeecCCC--------CeeEEEEccCCC
Q 008058 116 HPGGVSAISFATHGSCIYSAGADGM------VCEIDPLT--G--SLLG-----KFRASTK--------GISCMAVSSDGK 172 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~dg~------v~iwd~~~--~--~~~~-----~~~~~~~--------~v~~l~~~p~g~ 172 (579)
.-+.+.++.+.|++..+++.+.+|. ++.+++.. + ..+. .+....+ ..-+|++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467889999876677778888887 66666543 1 1111 1111111 334788877888
Q ss_pred EEEEECC--------eEEEEECCCCeeeEEee---------------cCCCCEEEEEEecCCCEEEEEe
Q 008058 173 MLATAAG--------QLKTFNCSDHKKMQKFS---------------GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 173 ~l~~~~g--------~i~vwd~~~~~~~~~~~---------------~h~~~v~~l~~~~~~~~l~s~s 218 (579)
++++.-+ .|+.++.. |+.+..+. ..+...-+|+++|+|+.|+++.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 8877652 57777765 65544441 1234577899999999666653
No 492
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.95 E-value=1e+02 Score=31.40 Aligned_cols=182 Identities=8% Similarity=0.030 Sum_probs=103.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----------------
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----------------- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~----------------- 148 (579)
..+|.+-+.||.+.+|+-..--....+ .+ .--.-.+.|.+....|++++.+..+..|....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 478999999999999997655433222 22 22334577888888999999998998886521
Q ss_pred ---Cce---eeEeecCCCCeeEE---EEc-cCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEE-EEe------cCC
Q 008058 149 ---GSL---LGKFRASTKGISCM---AVS-SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM-TFS------DNG 211 (579)
Q Consensus 149 ---~~~---~~~~~~~~~~v~~l---~~~-p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l-~~~------~~~ 211 (579)
++. -.++. -...+..| .++ .....++.|..++.+.+- +|......+ ......++ .|. |+.
T Consensus 223 ~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 223 ISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred ccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCC
Confidence 000 01111 11233333 333 233456666688888875 454433222 23333332 222 221
Q ss_pred C-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 212 K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 212 ~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
+ .++.++ .++++.||.=.+-. ....+.+....+....+. .-...|++-+.+|.+.+-=+.|
T Consensus 300 ~~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 300 RLNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ceEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEeCC
Confidence 1 355555 69999998633321 112234455555555554 4457788889999998864433
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.36 E-value=75 Score=29.58 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=63.2
Q ss_pred CcEEEEEECC-C--eEEEEEccC--CeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCC-Cc-eeeE
Q 008058 86 SSLLVLGTGG-G--DVLALAVSA--GQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGM-VCEIDPLT-GS-LLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~-g--~i~iwd~~~--~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~dg~-v~iwd~~~-~~-~~~~ 154 (579)
++++.+|+.. | .+++++... +.+.+.-.. .....=-....-|||+.|+.|+.+.- ...|.-.. .. ....
T Consensus 78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~ 157 (243)
T PF07250_consen 78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTL 157 (243)
T ss_pred CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceee
Confidence 7777776643 2 388888765 111111000 00111113334579999988887754 34444321 11 1111
Q ss_pred -eec------CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCC
Q 008058 155 -FRA------STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPG 200 (579)
Q Consensus 155 -~~~------~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~ 200 (579)
+-. ...-.-.+...|+|++++.+...-.|||..+.+.++.++.-.+
T Consensus 158 ~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 158 PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCC
Confidence 110 1122235677899999999997777889998887777764333
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.25 E-value=1e+02 Score=31.81 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=59.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEee-----cCCCCeeEEEEccCC------CEEEEEC-----
Q 008058 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFR-----ASTKGISCMAVSSDG------KMLATAA----- 178 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~-----~~~~~v~~l~~~p~g------~~l~~~~----- 178 (579)
-...+.++|.|||+.|++--..|.|++++..++.. +..+. ...+....|+++|+- .+|....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34679999999998777665469999998655432 21111 124578999999874 2333321
Q ss_pred -------CeEEEEECCCC-------eee-EEee---cCCCCEEEEEEecCCCEEEEEe
Q 008058 179 -------GQLKTFNCSDH-------KKM-QKFS---GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 179 -------g~i~vwd~~~~-------~~~-~~~~---~h~~~v~~l~~~~~~~~l~s~s 218 (579)
..|.-|.+... +.+ ..+. .|. -..|+|.|||..+++.|
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEEC
Confidence 23444544311 111 1121 233 34688999998777766
No 495
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.70 E-value=9.7 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.587 Sum_probs=22.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRL 112 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~ 112 (579)
+..+++++.+|.+..+|..+|+..++.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446889999999999999999887654
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=72.00 E-value=1.9e+02 Score=33.27 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=78.5
Q ss_pred CcEEEEEEC---------CCeEEEEEccC-----C------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058 86 SSLLVLGTG---------GGDVLALAVSA-----G------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 86 ~~~l~~~~~---------~g~i~iwd~~~-----~------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd 145 (579)
..+|++|+. .|.++|||+-. | +....+.++..++|..++= -+| +|+++ ..-.|.+|+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEE
Confidence 568888874 47799999742 2 1222233456677777663 255 45554 345699999
Q ss_pred CC-CCceeeE-eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeec--CCCCEEEEEEecCCC--EEEE
Q 008058 146 PL-TGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSG--HPGAVRFMTFSDNGK--YVLS 216 (579)
Q Consensus 146 ~~-~~~~~~~-~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~--h~~~v~~l~~~~~~~--~l~s 216 (579)
+. ....+.. |- .-++.-....--.++++.|+ ..|.+.-.+.. ..+.-+.. ..-.+.++.|--||. ++++
T Consensus 1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 84 4443332 21 12233333333456777777 56665544432 22222221 123477888877765 3444
Q ss_pred EecCCCeEEEEEcCCC
Q 008058 217 SAVGERYIALWRTDGV 232 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~ 232 (579)
+ +.|+.|.+|-....
T Consensus 1201 s-Da~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1201 S-DADRNIHVYMYAPE 1215 (1366)
T ss_pred E-cCCCcEEEEEeCCC
Confidence 4 57999888865543
No 497
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=71.94 E-value=25 Score=26.61 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=34.6
Q ss_pred CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
+.|..||..+. +....--...+.|.++|+++++..++...+.|++|..+.
T Consensus 36 ~~Vvyyd~~~~---~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEV---KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEe---EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45666665432 222222345578999999999988887889999998654
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=71.88 E-value=1e+02 Score=30.10 Aligned_cols=104 Identities=8% Similarity=0.119 Sum_probs=51.5
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeE--EEEecCCCCCCE--EEEEEccCCCEEEEEeC-----CCcEEEEeCCCCce
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGV--SAISFATHGSCIYSAGA-----DGMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~--~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~ 151 (579)
+.++++|+.+ ..+..||+.+.+. .......-..+. .+++. -+++..+.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4556666654 3477788877653 111111111111 12222 24566666653 23588899876542
Q ss_pred e--eEeecCCCCeeEEEEccCCCEEEEEC--C----eEEEEECCCCee
Q 008058 152 L--GKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKK 191 (579)
Q Consensus 152 ~--~~~~~~~~~v~~l~~~p~g~~l~~~~--g----~i~vwd~~~~~~ 191 (579)
. ..+.. .......+...++++.+.|+ + .+..||..+.+-
T Consensus 152 ~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 2 11211 11122223334677777776 1 467889887653
No 499
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.70 E-value=9.3 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 131 CIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
.++.++.+|.+..+|..+|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6778889999999999999876553
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.47 E-value=8.1 Score=41.24 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.1
Q ss_pred EEEEcc----CCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008058 10 LTSFSP----ALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 10 ~~~fs~----dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (579)
..+.++ +..++++.+.|+++|+||+.+++++....
T Consensus 219 ~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 219 SLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred eEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 345555 66799999999999999999999987765
Done!