Query 008058
Match_columns 579
No_of_seqs 605 out of 4110
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 8E-42 2.7E-46 348.8 36.7 281 2-379 107-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 4.3E-41 1.5E-45 334.6 38.1 280 2-378 54-340 (340)
3 1nr0_A Actin interacting prote 100.0 7.8E-41 2.7E-45 359.3 37.9 346 3-380 59-566 (611)
4 3ow8_A WD repeat-containing pr 100.0 2.1E-40 7.2E-45 326.5 37.3 281 2-379 31-319 (321)
5 2pbi_B Guanine nucleotide-bind 100.0 4.7E-40 1.6E-44 328.7 37.2 282 2-378 63-354 (354)
6 1nr0_A Actin interacting prote 100.0 6.5E-40 2.2E-44 352.2 37.1 325 3-379 147-609 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 1.2E-38 4.2E-43 311.6 38.3 280 3-380 13-301 (304)
8 4gqb_B Methylosome protein 50; 100.0 7.6E-39 2.6E-43 317.9 33.4 290 4-380 31-330 (344)
9 3frx_A Guanine nucleotide-bind 100.0 6E-38 2.1E-42 308.9 38.9 287 2-380 16-316 (319)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-38 1.2E-42 314.2 35.8 294 5-380 18-334 (345)
11 4ery_A WD repeat-containing pr 100.0 8.3E-38 2.8E-42 307.0 37.8 281 2-379 22-310 (312)
12 3iz6_a 40S ribosomal protein R 100.0 4.1E-39 1.4E-43 325.4 29.2 289 2-380 65-374 (380)
13 2ymu_A WD-40 repeat protein; u 100.0 6.6E-38 2.3E-42 334.8 40.1 314 3-378 262-577 (577)
14 1erj_A Transcriptional repress 100.0 1.6E-37 5.5E-42 315.2 39.5 302 3-380 64-388 (393)
15 4g56_B MGC81050 protein; prote 100.0 1.1E-38 3.7E-43 319.2 28.0 285 2-380 41-342 (357)
16 2xzm_R RACK1; ribosome, transl 100.0 2.8E-36 9.6E-41 300.2 40.2 292 2-380 20-339 (343)
17 1r5m_A SIR4-interacting protei 100.0 3.7E-37 1.3E-41 315.4 33.2 339 3-380 45-424 (425)
18 2hes_X YDR267CP; beta-propelle 100.0 1.8E-36 6.3E-41 299.8 35.1 287 2-380 13-327 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 3.4E-36 1.2E-40 321.5 39.2 316 3-380 221-538 (577)
20 3ow8_A WD repeat-containing pr 100.0 8.5E-36 2.9E-40 293.6 36.3 239 3-282 80-320 (321)
21 3vl1_A 26S proteasome regulato 100.0 9.9E-37 3.4E-41 312.3 25.0 321 11-381 62-419 (420)
22 1gxr_A ESG1, transducin-like e 100.0 1E-35 3.5E-40 294.8 30.9 319 3-379 9-335 (337)
23 1vyh_C Platelet-activating fac 100.0 1.7E-35 5.9E-40 301.9 33.4 239 2-281 149-409 (410)
24 3zwl_B Eukaryotic translation 100.0 1.9E-34 6.4E-39 289.3 39.2 294 2-380 31-345 (369)
25 2pm9_A Protein WEB1, protein t 100.0 1.2E-36 3.9E-41 311.2 23.1 332 5-380 14-413 (416)
26 4aow_A Guanine nucleotide-bind 100.0 4E-34 1.4E-38 283.9 38.9 289 2-380 37-336 (340)
27 3dm0_A Maltose-binding peripla 100.0 9.1E-35 3.1E-39 317.2 36.5 299 2-380 381-692 (694)
28 2ynn_A Coatomer subunit beta'; 100.0 1.2E-34 4.2E-39 283.2 33.4 230 86-380 25-258 (304)
29 1k8k_C P40, ARP2/3 complex 41 100.0 8E-35 2.7E-39 292.8 32.1 318 2-380 7-360 (372)
30 4gqb_B Methylosome protein 50; 100.0 1.1E-34 3.8E-39 287.9 32.5 239 4-285 83-333 (344)
31 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-34 4.9E-39 336.5 38.5 324 3-381 615-1034(1249)
32 4h5i_A Guanine nucleotide-exch 100.0 1.1E-34 3.8E-39 290.9 30.4 282 4-379 15-341 (365)
33 3mkq_A Coatomer beta'-subunit; 100.0 3E-34 1E-38 319.4 36.0 250 3-293 13-269 (814)
34 1got_B GT-beta; complex (GTP-b 100.0 9.9E-34 3.4E-38 281.4 35.8 236 3-280 97-340 (340)
35 3ei3_B DNA damage-binding prot 100.0 4.3E-34 1.5E-38 289.0 33.1 282 3-380 73-381 (383)
36 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.3E-34 3.2E-38 292.6 36.1 304 12-380 124-441 (445)
37 3dwl_C Actin-related protein 2 100.0 2E-35 6.9E-40 298.1 22.4 241 3-282 11-280 (377)
38 3k26_A Polycomb protein EED; W 100.0 2.2E-34 7.7E-39 288.6 29.8 298 2-380 17-365 (366)
39 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-34 1.2E-38 333.1 36.0 338 2-380 656-1115(1249)
40 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-35 8.9E-40 307.3 23.6 309 22-380 178-516 (524)
41 3i2n_A WD repeat-containing pr 100.0 3.5E-34 1.2E-38 286.3 30.5 308 3-380 18-352 (357)
42 1sq9_A Antiviral protein SKI8; 100.0 1.8E-33 6E-38 285.8 34.6 304 2-380 15-394 (397)
43 2pm7_B Protein transport prote 100.0 1.6E-33 5.4E-38 274.3 31.0 247 2-282 8-284 (297)
44 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-33 5.5E-38 313.7 34.8 197 3-234 17-245 (902)
45 1erj_A Transcriptional repress 100.0 8.8E-33 3E-37 280.3 36.1 241 9-284 127-390 (393)
46 3dw8_B Serine/threonine-protei 100.0 1.1E-33 3.8E-38 292.0 29.7 257 3-287 28-377 (447)
47 1pgu_A Actin interacting prote 100.0 4.5E-33 1.5E-37 299.5 35.2 330 3-380 160-613 (615)
48 3frx_A Guanine nucleotide-bind 100.0 1.9E-32 6.5E-37 269.6 36.1 240 3-284 65-318 (319)
49 4aez_A CDC20, WD repeat-contai 100.0 1.8E-32 6.3E-37 278.9 36.0 276 9-380 97-379 (401)
50 4gga_A P55CDC, cell division c 100.0 2.6E-32 8.8E-37 279.6 36.9 273 11-380 111-394 (420)
51 3v7d_B Cell division control p 100.0 2.2E-32 7.4E-37 284.0 36.3 306 12-379 127-461 (464)
52 2oaj_A Protein SNI1; WD40 repe 100.0 5.9E-33 2E-37 309.1 33.3 339 3-381 58-605 (902)
53 3gre_A Serine/threonine-protei 100.0 1.2E-33 4.2E-38 291.0 25.7 314 3-378 63-437 (437)
54 2pbi_B Guanine nucleotide-bind 100.0 2.3E-32 7.9E-37 273.0 34.0 236 4-280 107-354 (354)
55 4e54_B DNA damage-binding prot 100.0 1.6E-33 5.5E-38 289.8 25.8 281 4-380 120-429 (435)
56 3odt_A Protein DOA1; ubiquitin 100.0 5.2E-32 1.8E-36 265.2 35.1 272 2-380 17-295 (313)
57 4a11_B DNA excision repair pro 100.0 1.9E-32 6.7E-37 278.7 33.2 300 2-380 42-364 (408)
58 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-32 9.6E-37 271.5 33.5 252 3-289 61-341 (345)
59 1pgu_A Actin interacting prote 100.0 1.7E-32 5.8E-37 295.0 33.3 310 3-381 63-402 (615)
60 3iz6_a 40S ribosomal protein R 100.0 9.5E-33 3.3E-37 278.7 29.3 244 3-285 108-377 (380)
61 2hes_X YDR267CP; beta-propelle 100.0 2.2E-32 7.6E-37 270.4 31.3 242 2-283 57-328 (330)
62 1gxr_A ESG1, transducin-like e 100.0 4.9E-32 1.7E-36 268.2 33.6 281 2-327 50-334 (337)
63 2xzm_R RACK1; ribosome, transl 100.0 6.4E-32 2.2E-36 268.7 34.2 241 3-285 76-342 (343)
64 4g56_B MGC81050 protein; prote 100.0 1.2E-32 4.2E-37 275.3 28.9 243 4-285 95-345 (357)
65 3bg1_A Protein SEC13 homolog; 100.0 6.2E-33 2.1E-37 272.6 24.3 246 2-282 12-292 (316)
66 4ggc_A P55CDC, cell division c 100.0 2.5E-31 8.5E-36 261.1 35.6 273 11-380 31-314 (318)
67 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-31 9.2E-36 273.3 35.1 272 12-381 138-414 (435)
68 2pm9_A Protein WEB1, protein t 100.0 2E-32 7E-37 279.6 25.8 246 3-287 67-341 (416)
69 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-31 3.8E-36 298.6 33.3 244 2-285 54-304 (814)
70 4ery_A WD repeat-containing pr 100.0 5.7E-31 1.9E-35 258.2 34.0 239 3-282 65-311 (312)
71 1r5m_A SIR4-interacting protei 100.0 1.3E-31 4.4E-36 274.1 29.3 275 3-326 108-421 (425)
72 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-31 1.4E-35 262.4 32.0 253 2-289 10-343 (351)
73 4aez_A CDC20, WD repeat-contai 100.0 5.8E-31 2E-35 267.8 33.6 248 3-290 134-387 (401)
74 3vl1_A 26S proteasome regulato 100.0 1.9E-31 6.7E-36 272.9 30.3 236 11-284 103-366 (420)
75 1yfq_A Cell cycle arrest prote 100.0 1.4E-31 4.9E-36 265.8 28.4 278 2-379 10-322 (342)
76 2pm7_B Protein transport prote 100.0 3.8E-31 1.3E-35 257.5 29.7 235 86-379 21-283 (297)
77 3jrp_A Fusion protein of prote 100.0 5.4E-31 1.9E-35 265.2 31.7 250 2-285 10-289 (379)
78 3k26_A Polycomb protein EED; W 100.0 2.8E-31 9.7E-36 265.9 27.8 243 4-283 70-366 (366)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 6.5E-31 2.2E-35 267.6 29.1 280 11-381 40-342 (402)
80 3mmy_A MRNA export factor; mRN 100.0 6.7E-30 2.3E-34 256.0 33.9 280 2-379 38-344 (368)
81 3dm0_A Maltose-binding peripla 100.0 5.7E-30 2E-34 279.3 35.1 241 2-282 429-692 (694)
82 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-31 1.6E-35 268.2 24.2 293 9-370 19-350 (588)
83 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-30 1.2E-34 258.8 30.3 248 3-287 52-365 (372)
84 4aow_A Guanine nucleotide-bind 100.0 2.1E-29 7.1E-34 249.8 34.9 246 3-285 86-339 (340)
85 3bg1_A Protein SEC13 homolog; 100.0 8.6E-31 3E-35 257.3 24.2 235 86-380 25-292 (316)
86 1sq9_A Antiviral protein SKI8; 100.0 2.4E-30 8.3E-35 262.6 28.3 250 3-285 62-397 (397)
87 3f3f_A Nucleoporin SEH1; struc 100.0 4.3E-30 1.5E-34 255.0 28.9 285 67-380 13-336 (351)
88 3jro_A Fusion protein of prote 100.0 8E-31 2.7E-35 287.9 25.6 251 2-286 8-288 (753)
89 3v7d_B Cell division control p 100.0 1.6E-29 5.6E-34 262.3 34.1 243 2-289 161-427 (464)
90 2j04_B YDR362CP, TAU91; beta p 100.0 7.3E-31 2.5E-35 273.7 23.4 253 4-283 208-517 (524)
91 3gre_A Serine/threonine-protei 100.0 4.3E-31 1.5E-35 272.0 21.3 297 12-381 34-359 (437)
92 3i2n_A WD repeat-containing pr 100.0 3.2E-30 1.1E-34 257.5 26.9 250 3-286 65-356 (357)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-29 5.9E-34 261.0 32.6 256 4-281 5-337 (450)
94 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-29 4.9E-34 251.7 29.8 235 11-286 42-295 (343)
95 3jrp_A Fusion protein of prote 100.0 1.8E-29 6E-34 254.2 30.4 236 86-380 23-286 (379)
96 4gga_A P55CDC, cell division c 100.0 8.2E-29 2.8E-33 253.5 35.3 243 4-288 148-400 (420)
97 3zwl_B Eukaryotic translation 100.0 7.4E-29 2.5E-33 248.5 33.1 242 3-287 74-350 (369)
98 3dwl_C Actin-related protein 2 100.0 2.9E-30 1E-34 260.2 22.4 196 3-230 55-280 (377)
99 3ei3_B DNA damage-binding prot 100.0 3.4E-29 1.2E-33 253.0 27.6 240 2-283 117-382 (383)
100 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-28 9.5E-33 243.5 33.7 291 3-380 19-335 (355)
101 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.8E-28 9.4E-33 251.6 34.7 262 2-321 158-429 (445)
102 2xyi_A Probable histone-bindin 100.0 3.9E-29 1.3E-33 256.7 27.8 248 3-284 128-411 (430)
103 3odt_A Protein DOA1; ubiquitin 100.0 3.6E-28 1.2E-32 237.8 33.4 237 3-289 59-302 (313)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 6.5E-29 2.2E-33 252.7 28.2 247 2-285 80-344 (402)
105 4ggc_A P55CDC, cell division c 100.0 2.6E-27 9E-32 232.3 34.6 240 4-285 68-317 (318)
106 4e54_B DNA damage-binding prot 100.0 9E-29 3.1E-33 254.4 24.8 247 2-286 163-433 (435)
107 2xyi_A Probable histone-bindin 100.0 3.8E-28 1.3E-32 249.2 29.4 254 66-380 129-409 (430)
108 4gq1_A NUP37; propeller, trans 100.0 5.9E-28 2E-32 244.7 29.0 232 86-379 101-387 (393)
109 4h5i_A Guanine nucleotide-exch 100.0 2.9E-28 1E-32 244.1 26.4 193 10-232 138-344 (365)
110 1p22_A F-BOX/WD-repeat protein 100.0 9.3E-28 3.2E-32 246.9 29.0 239 3-288 173-419 (435)
111 3bws_A Protein LP49; two-domai 100.0 3.7E-27 1.3E-31 242.1 33.0 280 9-380 126-431 (433)
112 3jro_A Fusion protein of prote 100.0 8.4E-28 2.9E-32 263.9 27.1 236 86-380 21-284 (753)
113 3dw8_B Serine/threonine-protei 100.0 2.9E-27 1E-31 243.9 27.9 257 4-281 94-444 (447)
114 1l0q_A Surface layer protein; 100.0 5.7E-26 2E-30 229.9 36.4 264 18-380 3-274 (391)
115 4a11_B DNA excision repair pro 100.0 1.6E-26 5.3E-31 235.0 31.5 252 2-292 98-374 (408)
116 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-28 2.8E-32 244.5 18.1 249 3-319 85-350 (588)
117 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-26 5.2E-31 229.9 26.6 243 4-280 77-330 (343)
118 1yfq_A Cell cycle arrest prote 100.0 1.3E-26 4.5E-31 229.9 25.1 244 66-380 12-281 (342)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-26 1.2E-30 236.2 29.1 242 5-282 104-390 (450)
120 4gq1_A NUP37; propeller, trans 99.9 1.6E-26 5.3E-31 234.2 24.1 239 12-281 96-387 (393)
121 2w18_A PALB2, fancn, partner a 99.9 3.9E-25 1.3E-29 211.3 31.6 248 19-281 56-355 (356)
122 3mmy_A MRNA export factor; mRN 99.9 1.2E-25 4.2E-30 224.9 26.0 239 86-381 54-304 (368)
123 1l0q_A Surface layer protein; 99.9 3E-24 1E-28 217.3 35.4 240 9-291 35-283 (391)
124 1nir_A Nitrite reductase; hemo 99.9 4.7E-25 1.6E-29 231.7 29.7 323 12-380 144-513 (543)
125 3vu4_A KMHSV2; beta-propeller 99.9 3.3E-25 1.1E-29 221.2 26.4 233 10-285 63-338 (355)
126 2w18_A PALB2, fancn, partner a 99.9 9.8E-26 3.3E-30 215.5 21.0 213 4-229 112-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.9E-24 2.7E-28 215.6 33.6 311 12-363 69-411 (415)
128 3bws_A Protein LP49; two-domai 99.9 1.3E-23 4.4E-28 215.7 33.3 236 4-283 170-432 (433)
129 2ecf_A Dipeptidyl peptidase IV 99.9 4.6E-23 1.6E-27 226.7 31.8 341 4-379 37-457 (741)
130 3u4y_A Uncharacterized protein 99.9 6.3E-22 2.2E-26 195.3 29.7 287 12-382 4-305 (331)
131 1xfd_A DIP, dipeptidyl aminope 99.9 3.9E-23 1.3E-27 226.6 21.2 321 9-371 20-431 (723)
132 1nir_A Nitrite reductase; hemo 99.9 1.6E-21 5.6E-26 204.7 30.9 274 86-381 149-458 (543)
133 3vgz_A Uncharacterized protein 99.9 1.2E-20 4E-25 187.7 34.4 243 9-291 44-311 (353)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.8E-21 1.3E-25 195.8 30.9 225 17-285 143-389 (415)
135 1pby_B Quinohemoprotein amine 99.9 5.5E-21 1.9E-25 188.7 27.3 266 18-380 2-309 (337)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1E-21 3.5E-26 214.7 24.2 333 12-381 32-435 (706)
137 2ojh_A Uncharacterized protein 99.9 7.5E-21 2.6E-25 183.7 25.7 221 23-284 18-259 (297)
138 1ri6_A Putative isomerase YBHE 99.9 3E-20 1E-24 183.8 30.1 272 19-380 7-307 (343)
139 3u4y_A Uncharacterized protein 99.9 4.6E-20 1.6E-24 181.8 29.7 238 10-285 44-306 (331)
140 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.7E-24 179.8 31.3 239 10-285 42-312 (343)
141 1k32_A Tricorn protease; prote 99.9 8.2E-21 2.8E-25 216.2 25.1 267 87-379 215-500 (1045)
142 1k32_A Tricorn protease; prote 99.9 5.1E-20 1.8E-24 209.6 29.5 242 10-285 249-504 (1045)
143 2ojh_A Uncharacterized protein 99.9 5.5E-20 1.9E-24 177.6 24.9 231 4-274 42-293 (297)
144 1jmx_B Amine dehydrogenase; ox 99.9 7.4E-20 2.5E-24 181.6 25.6 238 11-290 5-332 (349)
145 3hfq_A Uncharacterized protein 99.9 6.7E-19 2.3E-23 174.9 31.1 242 10-286 44-322 (347)
146 2ecf_A Dipeptidyl peptidase IV 99.8 6.9E-20 2.4E-24 201.3 24.9 281 67-380 38-412 (741)
147 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-19 3.4E-24 186.0 22.6 210 10-233 41-280 (434)
148 3hfq_A Uncharacterized protein 99.8 4.1E-18 1.4E-22 169.1 33.4 233 86-380 51-316 (347)
149 1pby_B Quinohemoprotein amine 99.8 5.7E-19 2E-23 174.1 26.3 240 10-290 38-317 (337)
150 3vgz_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 169.8 31.3 233 10-274 93-335 (353)
151 1z68_A Fibroblast activation p 99.8 1E-19 3.4E-24 199.3 20.9 327 10-379 20-441 (719)
152 3scy_A Hypothetical bacterial 99.8 6.9E-18 2.4E-22 168.5 31.8 239 11-287 55-343 (361)
153 3o4h_A Acylamino-acid-releasin 99.8 8.6E-19 2.9E-23 186.9 26.0 233 4-288 22-279 (582)
154 2z3z_A Dipeptidyl aminopeptida 99.8 2E-18 6.8E-23 188.6 28.6 254 4-285 121-437 (706)
155 1xfd_A DIP, dipeptidyl aminope 99.8 1.6E-18 5.4E-23 190.0 25.6 237 9-283 64-393 (723)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-17 5.6E-22 166.1 30.2 240 9-284 43-342 (365)
157 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-17 5.3E-22 182.2 31.7 248 9-288 20-358 (740)
158 3scy_A Hypothetical bacterial 99.8 1.3E-16 4.5E-21 159.2 32.7 235 13-282 9-290 (361)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-17 5.9E-22 169.4 25.1 197 4-230 93-332 (434)
160 3pe7_A Oligogalacturonate lyas 99.8 1.1E-16 3.8E-21 161.3 29.2 304 31-379 14-380 (388)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-16 7.3E-21 157.9 28.3 191 86-282 51-290 (365)
162 1jmx_B Amine dehydrogenase; ox 99.8 9.4E-17 3.2E-21 159.1 25.2 144 86-234 11-178 (349)
163 1q7f_A NHL, brain tumor CG1071 99.7 2.6E-15 9E-20 144.4 31.8 241 9-284 33-281 (286)
164 3pe7_A Oligogalacturonate lyas 99.7 2.8E-16 9.6E-21 158.3 24.0 238 11-286 41-332 (388)
165 3o4h_A Acylamino-acid-releasin 99.7 8.6E-17 2.9E-21 171.5 19.9 265 66-379 22-313 (582)
166 1z68_A Fibroblast activation p 99.7 6.6E-17 2.3E-21 176.9 18.5 275 86-380 27-390 (719)
167 3c5m_A Oligogalacturonate lyas 99.7 2E-16 7E-21 159.6 20.6 232 11-285 41-331 (396)
168 3fvz_A Peptidyl-glycine alpha- 99.7 3.4E-15 1.2E-19 146.8 27.8 240 4-283 24-322 (329)
169 3azo_A Aminopeptidase; POP fam 99.7 5.6E-15 1.9E-19 160.0 26.5 249 4-285 24-327 (662)
170 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5E-19 144.0 24.4 291 15-362 13-360 (361)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.8E-13 6.1E-18 143.3 32.5 233 13-283 163-421 (567)
172 2dg1_A DRP35, lactonase; beta 99.6 3.5E-14 1.2E-18 139.8 25.7 246 1-287 3-266 (333)
173 3no2_A Uncharacterized protein 99.6 9.7E-14 3.3E-18 132.3 26.9 230 15-288 3-257 (276)
174 4a5s_A Dipeptidyl peptidase 4 99.6 9.6E-15 3.3E-19 160.0 22.2 194 11-233 67-355 (740)
175 2oiz_A Aromatic amine dehydrog 99.6 1.9E-13 6.3E-18 136.0 28.3 237 10-290 54-343 (361)
176 2xdw_A Prolyl endopeptidase; a 99.6 3E-13 1E-17 147.4 31.8 237 9-285 128-416 (710)
177 3fvz_A Peptidyl-glycine alpha- 99.6 1E-13 3.4E-18 136.3 25.4 222 96-380 69-321 (329)
178 1rwi_B Serine/threonine-protei 99.6 2.3E-13 7.8E-18 129.5 26.3 238 9-286 27-267 (270)
179 3e5z_A Putative gluconolactona 99.6 4.6E-13 1.6E-17 129.4 26.8 231 10-286 32-289 (296)
180 3c5m_A Oligogalacturonate lyas 99.6 9.6E-14 3.3E-18 139.9 22.4 249 11-285 86-386 (396)
181 2gop_A Trilobed protease; beta 99.6 1.1E-12 3.6E-17 129.9 28.7 213 12-283 21-291 (347)
182 1q7f_A NHL, brain tumor CG1071 99.6 1.5E-12 5E-17 125.1 28.4 181 86-281 41-236 (286)
183 2dg1_A DRP35, lactonase; beta 99.6 3.4E-12 1.2E-16 125.4 31.3 224 10-274 49-301 (333)
184 3dsm_A Uncharacterized protein 99.6 1.1E-12 3.8E-17 128.6 26.5 234 12-290 50-308 (328)
185 3azo_A Aminopeptidase; POP fam 99.6 1.5E-13 5.2E-18 148.7 22.1 238 12-286 83-372 (662)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-12 6.3E-17 141.2 30.1 202 68-288 127-373 (710)
187 2gop_A Trilobed protease; beta 99.6 5.3E-13 1.8E-17 132.0 23.5 218 9-282 62-330 (347)
188 1qks_A Cytochrome CD1 nitrite 99.5 5.4E-12 1.8E-16 132.1 31.5 193 86-290 167-380 (567)
189 3no2_A Uncharacterized protein 99.5 1.3E-12 4.5E-17 124.4 24.6 189 86-291 5-203 (276)
190 2bkl_A Prolyl endopeptidase; m 99.5 1E-12 3.4E-17 142.9 22.9 236 9-286 124-400 (695)
191 2bkl_A Prolyl endopeptidase; m 99.5 2E-12 7E-17 140.5 24.9 236 13-282 75-348 (695)
192 3e5z_A Putative gluconolactona 99.5 9.5E-12 3.3E-16 120.1 27.1 189 69-282 31-245 (296)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.5E-11 5.2E-16 119.6 28.0 237 10-283 22-299 (314)
194 3dsm_A Uncharacterized protein 99.5 1.8E-11 6.3E-16 119.9 25.9 223 25-286 15-256 (328)
195 2z2n_A Virginiamycin B lyase; 99.4 1.7E-10 5.8E-15 111.0 31.2 232 9-281 18-253 (299)
196 3g4e_A Regucalcin; six bladed 99.4 1.4E-10 4.8E-15 111.9 29.9 200 70-288 17-234 (297)
197 1yr2_A Prolyl oligopeptidase; 99.4 3.6E-11 1.2E-15 131.6 27.2 236 9-286 166-444 (741)
198 3hrp_A Uncharacterized protein 99.4 2.3E-10 7.9E-15 115.4 29.6 233 9-281 134-408 (409)
199 2z2n_A Virginiamycin B lyase; 99.4 5E-10 1.7E-14 107.7 30.8 233 9-284 60-296 (299)
200 2mad_H Methylamine dehydrogena 99.4 1E-09 3.4E-14 109.2 32.9 186 12-233 27-245 (373)
201 1yr2_A Prolyl oligopeptidase; 99.4 5.1E-11 1.8E-15 130.4 25.4 184 86-282 174-392 (741)
202 2mad_H Methylamine dehydrogena 99.4 1E-09 3.4E-14 109.2 32.1 241 11-289 71-356 (373)
203 3iuj_A Prolyl endopeptidase; h 99.4 1E-10 3.5E-15 126.8 26.3 234 10-285 133-407 (693)
204 3sjl_D Methylamine dehydrogena 99.4 3E-10 1E-14 111.5 26.5 239 11-291 83-371 (386)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.5E-10 1.5E-14 109.1 27.8 191 86-285 29-258 (314)
206 2qc5_A Streptogramin B lactona 99.3 1.9E-09 6.4E-14 103.7 31.3 232 9-281 23-258 (300)
207 1rwi_B Serine/threonine-protei 99.3 8.6E-11 2.9E-15 111.5 19.5 194 10-233 71-266 (270)
208 3sjl_D Methylamine dehydrogena 99.3 7.2E-10 2.5E-14 108.9 26.3 276 86-380 44-362 (386)
209 2ghs_A AGR_C_1268P; regucalcin 99.3 3E-09 1E-13 104.0 30.0 183 86-281 61-258 (326)
210 3g4e_A Regucalcin; six bladed 99.3 2.3E-09 7.8E-14 103.3 28.5 219 11-272 18-261 (297)
211 2qc5_A Streptogramin B lactona 99.3 3.8E-09 1.3E-13 101.5 29.6 230 9-281 65-298 (300)
212 1xip_A Nucleoporin NUP159; bet 99.3 3.3E-11 1.1E-15 118.9 15.0 183 5-218 39-232 (388)
213 1yiq_A Quinohemoprotein alcoho 99.3 5.6E-10 1.9E-14 120.3 25.3 240 16-291 120-513 (689)
214 3c75_H MADH, methylamine dehyd 99.3 9.2E-10 3.1E-14 110.1 25.0 237 11-290 123-409 (426)
215 2ghs_A AGR_C_1268P; regucalcin 99.3 1.3E-08 4.3E-13 99.5 31.1 218 10-272 53-291 (326)
216 1kb0_A Quinohemoprotein alcoho 99.2 8.6E-10 2.9E-14 118.6 23.5 241 16-291 127-515 (677)
217 2hz6_A Endoplasmic reticulum t 99.2 8E-12 2.7E-16 124.5 6.0 223 16-285 8-238 (369)
218 2ece_A 462AA long hypothetical 99.2 4.8E-09 1.7E-13 103.6 24.4 232 12-271 88-399 (462)
219 3hrp_A Uncharacterized protein 99.2 1.5E-08 5.2E-13 102.1 28.7 186 86-285 142-356 (409)
220 1yiq_A Quinohemoprotein alcoho 99.2 6.9E-09 2.4E-13 111.7 26.9 199 17-235 70-342 (689)
221 3c75_H MADH, methylamine dehyd 99.2 4.7E-09 1.6E-13 105.0 23.6 274 86-380 84-401 (426)
222 2qe8_A Uncharacterized protein 99.1 8.4E-10 2.9E-14 108.8 17.0 239 10-279 21-317 (343)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.5E-08 1.2E-12 98.4 28.3 234 16-290 52-303 (376)
224 1xip_A Nucleoporin NUP159; bet 99.1 2.5E-09 8.4E-14 105.5 18.3 164 86-270 49-231 (388)
225 3dr2_A Exported gluconolactona 99.1 6.6E-09 2.2E-13 100.5 21.0 218 11-275 50-299 (305)
226 1fwx_A Nitrous oxide reductase 99.1 1.7E-08 5.7E-13 103.4 24.3 240 15-285 99-433 (595)
227 2iwa_A Glutamine cyclotransfer 99.1 1.6E-08 5.5E-13 94.0 22.1 191 11-232 26-238 (266)
228 2hz6_A Endoplasmic reticulum t 99.1 2.3E-11 8E-16 121.1 2.8 184 86-290 9-199 (369)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.1E-08 1E-12 98.9 24.6 224 16-290 102-344 (376)
230 1kb0_A Quinohemoprotein alcoho 99.1 6.1E-08 2.1E-12 104.2 28.4 199 17-235 77-350 (677)
231 1kv9_A Type II quinohemoprotei 99.0 3.9E-08 1.3E-12 105.6 24.5 241 16-291 116-496 (668)
232 1fwx_A Nitrous oxide reductase 99.0 1.7E-07 5.9E-12 96.0 26.3 189 86-283 101-361 (595)
233 3dr2_A Exported gluconolactona 99.0 7.5E-08 2.6E-12 93.0 21.9 186 87-288 58-271 (305)
234 1mda_H Methylamine dehydrogena 99.0 3E-08 1E-12 97.5 18.7 221 28-291 47-354 (368)
235 2ece_A 462AA long hypothetical 98.9 7.2E-08 2.5E-12 95.3 20.0 191 86-283 96-352 (462)
236 1w6s_A Methanol dehydrogenase 98.9 2.9E-07 9.7E-12 96.7 25.8 245 12-291 112-511 (599)
237 1mda_H Methylamine dehydrogena 98.9 5.4E-08 1.9E-12 95.7 19.0 165 97-283 47-240 (368)
238 2ad6_A Methanol dehydrogenase 98.9 3E-07 1E-11 96.7 25.9 241 16-291 114-502 (571)
239 3iuj_A Prolyl endopeptidase; h 98.9 8.4E-08 2.9E-12 103.9 21.3 186 86-285 140-361 (693)
240 3nol_A Glutamine cyclotransfer 98.9 1.9E-07 6.4E-12 85.7 20.1 173 12-218 49-243 (262)
241 3hxj_A Pyrrolo-quinoline quino 98.9 2E-07 6.9E-12 90.8 20.5 249 12-288 26-288 (330)
242 3hxj_A Pyrrolo-quinoline quino 98.9 4E-07 1.4E-11 88.7 22.6 216 17-282 107-323 (330)
243 2qe8_A Uncharacterized protein 98.8 2.6E-07 9E-12 90.8 21.2 188 9-218 70-309 (343)
244 1npe_A Nidogen, entactin; glyc 98.8 4.2E-06 1.4E-10 78.8 28.2 190 86-290 48-245 (267)
245 3mbr_X Glutamine cyclotransfer 98.8 2.1E-06 7.3E-11 78.0 22.9 174 12-218 27-222 (243)
246 1kv9_A Type II quinohemoprotei 98.8 6.3E-06 2.1E-10 88.4 29.8 200 17-235 66-337 (668)
247 1flg_A Protein (quinoprotein e 98.8 1.5E-06 5.3E-11 91.3 24.5 245 17-291 117-524 (582)
248 2fp8_A Strictosidine synthase; 98.7 6.3E-06 2.1E-10 80.0 26.5 249 11-282 24-312 (322)
249 3nok_A Glutaminyl cyclase; bet 98.7 9E-07 3.1E-11 81.1 18.9 173 12-218 61-253 (268)
250 2iwa_A Glutamine cyclotransfer 98.7 9.3E-06 3.2E-10 75.4 24.4 183 88-284 33-238 (266)
251 2ad6_A Methanol dehydrogenase 98.7 1.4E-05 4.7E-10 83.9 28.6 197 17-235 62-339 (571)
252 1npe_A Nidogen, entactin; glyc 98.6 3E-05 1E-09 72.9 27.9 194 10-234 40-241 (267)
253 3nol_A Glutamine cyclotransfer 98.5 4E-06 1.4E-10 76.8 17.4 167 109-290 34-208 (262)
254 3nok_A Glutaminyl cyclase; bet 98.5 4.5E-06 1.5E-10 76.5 17.6 168 107-290 44-217 (268)
255 1ijq_A LDL receptor, low-densi 98.5 0.00027 9.3E-09 68.1 30.7 231 19-287 3-242 (316)
256 2p4o_A Hypothetical protein; p 98.5 5.6E-05 1.9E-09 72.6 25.7 225 10-273 36-278 (306)
257 2xe4_A Oligopeptidase B; hydro 98.5 3.5E-05 1.2E-09 83.9 25.5 191 10-229 178-398 (751)
258 3mbr_X Glutamine cyclotransfer 98.4 2E-05 6.8E-10 71.6 19.3 168 108-290 11-186 (243)
259 1flg_A Protein (quinoprotein e 98.4 8.5E-05 2.9E-09 78.0 26.4 198 17-235 68-359 (582)
260 1w6s_A Methanol dehydrogenase 98.4 3.4E-05 1.2E-09 81.0 23.1 203 17-235 62-346 (599)
261 2fp8_A Strictosidine synthase; 98.3 0.00016 5.5E-09 70.0 24.7 186 86-282 30-268 (322)
262 3v65_B Low-density lipoprotein 98.3 0.00048 1.6E-08 68.5 28.1 199 69-287 119-322 (386)
263 3p5b_L Low density lipoprotein 98.3 0.001 3.5E-08 66.4 30.4 192 87-288 125-325 (400)
264 3v64_C Agrin; beta propeller, 98.3 0.0017 6E-08 63.3 30.2 198 69-287 76-279 (349)
265 4a2l_A BT_4663, two-component 98.2 0.0015 5.3E-08 71.6 32.2 245 4-285 310-573 (795)
266 3sov_A LRP-6, low-density lipo 98.2 0.00056 1.9E-08 65.9 25.3 198 70-287 39-242 (318)
267 3qqz_A Putative uncharacterize 98.2 0.00089 3E-08 61.6 25.2 196 67-281 28-251 (255)
268 1k3i_A Galactose oxidase precu 98.2 9.6E-05 3.3E-09 79.3 21.6 243 8-285 188-499 (656)
269 2p4o_A Hypothetical protein; p 98.1 0.0017 5.9E-08 62.1 26.6 183 86-282 43-241 (306)
270 4a2l_A BT_4663, two-component 98.1 0.0028 9.4E-08 69.6 31.3 239 9-285 360-616 (795)
271 3v65_B Low-density lipoprotein 98.1 0.0017 5.6E-08 64.5 26.7 196 9-234 119-321 (386)
272 1ijq_A LDL receptor, low-densi 98.1 0.0032 1.1E-07 60.5 28.1 180 92-283 6-195 (316)
273 3v64_C Agrin; beta propeller, 98.1 0.0021 7.3E-08 62.7 27.1 144 86-233 128-277 (349)
274 3tc9_A Hypothetical hydrolase; 98.1 0.00082 2.8E-08 67.7 24.6 148 10-187 141-300 (430)
275 3qqz_A Putative uncharacterize 98.0 0.0035 1.2E-07 57.7 24.7 189 11-229 32-251 (255)
276 3amr_A 3-phytase; beta-propell 98.0 0.0067 2.3E-07 58.0 26.9 204 69-288 28-269 (355)
277 3amr_A 3-phytase; beta-propell 98.0 0.0012 4.1E-08 63.2 21.4 189 17-230 40-262 (355)
278 4hw6_A Hypothetical protein, I 98.0 0.0027 9.2E-08 64.0 25.2 189 10-229 143-372 (433)
279 3tc9_A Hypothetical hydrolase; 97.9 0.0037 1.3E-07 62.9 25.8 141 87-231 150-301 (430)
280 3m0c_C LDL receptor, low-densi 97.9 0.0087 3E-07 64.8 29.3 191 87-287 437-636 (791)
281 2xe4_A Oligopeptidase B; hydro 97.9 0.0006 2E-08 74.2 20.5 183 86-281 186-398 (751)
282 3sov_A LRP-6, low-density lipo 97.9 0.0069 2.4E-07 58.1 25.5 145 86-234 91-241 (318)
283 3p5b_L Low density lipoprotein 97.9 0.0083 2.8E-07 59.7 26.4 145 86-234 171-323 (400)
284 2p9w_A MAL S 1 allergenic prot 97.8 0.0043 1.5E-07 58.8 22.4 152 69-231 16-215 (334)
285 1k3i_A Galactose oxidase precu 97.8 0.00038 1.3E-08 74.6 17.3 227 11-272 248-530 (656)
286 4hw6_A Hypothetical protein, I 97.8 0.0031 1.1E-07 63.5 22.8 141 87-231 153-304 (433)
287 3v9f_A Two-component system se 97.8 0.0052 1.8E-07 67.2 26.2 243 9-285 316-570 (781)
288 1n7d_A LDL receptor, low-densi 97.7 0.00018 6.1E-09 77.4 12.1 192 88-290 419-621 (699)
289 3m0c_C LDL receptor, low-densi 97.7 0.013 4.4E-07 63.5 26.1 143 87-233 484-634 (791)
290 2vpj_A Kelch-like protein 12; 97.7 0.006 2.1E-07 58.0 21.3 183 86-284 63-279 (301)
291 3kya_A Putative phosphatase; s 97.7 0.012 3.9E-07 59.7 23.9 151 10-186 143-339 (496)
292 3v9f_A Two-component system se 97.7 0.015 5.1E-07 63.6 27.1 183 87-285 418-613 (781)
293 3sre_A PON1, serum paraoxonase 97.7 0.0089 3E-07 57.9 22.1 130 95-229 138-296 (355)
294 2xbg_A YCF48-like protein; pho 97.5 0.054 1.8E-06 52.1 25.1 154 114-281 159-320 (327)
295 4a0p_A LRP6, LRP-6, low-densit 97.5 0.073 2.5E-06 56.2 27.9 184 87-282 7-196 (628)
296 3ii7_A Kelch-like protein 7; p 97.5 0.027 9.4E-07 53.5 22.8 183 86-284 56-273 (306)
297 2xn4_A Kelch-like protein 2; s 97.5 0.03 1E-06 53.1 22.9 183 86-284 62-277 (302)
298 2xzh_A Clathrin heavy chain 1; 97.4 0.069 2.4E-06 50.2 23.6 194 86-290 78-297 (365)
299 3s94_A LRP-6, low-density lipo 97.4 0.046 1.6E-06 57.6 25.5 186 88-287 53-247 (619)
300 2p9w_A MAL S 1 allergenic prot 97.4 0.01 3.5E-07 56.2 17.8 153 120-282 15-214 (334)
301 3sre_A PON1, serum paraoxonase 97.4 0.057 1.9E-06 52.2 23.3 176 94-280 81-295 (355)
302 4a0p_A LRP6, LRP-6, low-densit 97.3 0.23 8E-06 52.3 31.1 186 86-285 49-239 (628)
303 1n7d_A LDL receptor, low-densi 97.3 0.00091 3.1E-08 71.8 10.9 143 87-233 466-616 (699)
304 3pbp_A Nucleoporin NUP82; beta 97.3 0.042 1.4E-06 53.7 21.1 148 126-280 29-209 (452)
305 1bpo_A Protein (clathrin); cla 97.3 0.16 5.3E-06 49.8 24.7 194 86-290 77-296 (494)
306 1zgk_A Kelch-like ECH-associat 97.2 0.038 1.3E-06 52.6 20.5 183 86-284 71-288 (308)
307 4asc_A Kelch repeat and BTB do 97.2 0.086 2.9E-06 50.2 22.5 141 86-233 46-223 (315)
308 3s94_A LRP-6, low-density lipo 97.2 0.051 1.7E-06 57.3 22.4 195 9-233 43-245 (619)
309 2ism_A Putative oxidoreductase 97.1 0.18 6.3E-06 48.9 24.8 198 10-232 35-298 (352)
310 3kya_A Putative phosphatase; s 97.1 0.023 7.7E-07 57.6 18.3 143 88-231 153-341 (496)
311 2xbg_A YCF48-like protein; pho 97.1 0.07 2.4E-06 51.3 21.1 111 115-229 202-320 (327)
312 3a9g_A Putative uncharacterize 97.0 0.29 9.9E-06 47.5 26.1 199 9-232 32-297 (354)
313 3ei3_A DNA damage-binding prot 96.9 0.41 1.4E-05 54.2 28.4 140 86-231 844-999 (1158)
314 2vpj_A Kelch-like protein 12; 96.9 0.14 4.9E-06 48.2 20.9 142 86-233 113-280 (301)
315 2woz_A Kelch repeat and BTB do 96.8 0.27 9.1E-06 46.8 22.2 131 98-233 80-233 (318)
316 2be1_A Serine/threonine-protei 96.8 0.015 5E-07 55.8 12.8 116 18-157 11-139 (339)
317 2be1_A Serine/threonine-protei 96.7 0.013 4.4E-07 56.2 12.0 196 86-288 10-236 (339)
318 3ii7_A Kelch-like protein 7; p 96.6 0.25 8.5E-06 46.7 20.4 142 86-233 102-274 (306)
319 2uvk_A YJHT; unknown function, 96.5 0.43 1.5E-05 46.2 22.1 180 96-288 86-347 (357)
320 3ei3_A DNA damage-binding prot 96.5 1.4 4.6E-05 50.0 28.5 178 96-283 807-999 (1158)
321 2xn4_A Kelch-like protein 2; s 96.5 0.19 6.5E-06 47.4 18.9 142 86-233 109-278 (302)
322 2xzh_A Clathrin heavy chain 1; 96.5 0.6 2E-05 43.9 28.9 234 11-287 72-336 (365)
323 4asc_A Kelch repeat and BTB do 96.4 0.42 1.4E-05 45.3 20.7 180 89-284 8-222 (315)
324 1zgk_A Kelch-like ECH-associat 96.2 0.2 6.8E-06 47.5 17.0 183 86-284 25-241 (308)
325 1tl2_A L10, protein (tachylect 96.1 0.4 1.4E-05 42.4 16.8 137 86-228 4-160 (236)
326 1xi4_A Clathrin heavy chain; a 96.1 0.4 1.4E-05 54.3 20.4 195 86-291 77-297 (1630)
327 2woz_A Kelch repeat and BTB do 96.1 0.52 1.8E-05 44.8 19.3 101 86-190 110-233 (318)
328 3pbp_A Nucleoporin NUP82; beta 96.0 0.048 1.7E-06 53.3 11.1 133 5-146 67-210 (452)
329 2g8s_A Glucose/sorbosone dehyd 95.9 1.3 4.4E-05 42.8 24.2 27 9-35 21-47 (353)
330 1bpo_A Protein (clathrin); cla 95.9 1.4 4.9E-05 43.2 31.3 235 10-287 70-335 (494)
331 3ott_A Two-component system se 95.4 3.8 0.00013 44.2 30.0 178 86-284 73-261 (758)
332 2ism_A Putative oxidoreductase 95.2 1 3.6E-05 43.4 17.9 98 118-218 31-153 (352)
333 3das_A Putative oxidoreductase 95.1 2.5 8.6E-05 40.5 27.0 31 9-39 35-65 (347)
334 1xi4_A Clathrin heavy chain; a 94.8 1.2 4E-05 50.6 18.4 190 13-235 73-293 (1630)
335 3sbq_A Nitrous-oxide reductase 94.7 4.2 0.00014 41.3 25.6 256 20-284 73-409 (638)
336 2zwa_A Leucine carboxyl methyl 94.7 1.5 5.1E-05 46.8 19.0 147 86-233 398-579 (695)
337 3a9g_A Putative uncharacterize 94.7 3.3 0.00011 40.0 23.3 126 89-217 42-215 (354)
338 2g8s_A Glucose/sorbosone dehyd 94.5 3.6 0.00012 39.6 24.1 129 86-216 29-214 (353)
339 3s25_A Hypothetical 7-bladed b 94.5 3.2 0.00011 38.9 22.7 157 96-282 88-254 (302)
340 1tl2_A L10, protein (tachylect 94.3 0.96 3.3E-05 40.0 13.1 136 129-277 4-157 (236)
341 3s25_A Hypothetical 7-bladed b 94.3 3.6 0.00012 38.6 23.8 133 86-233 115-257 (302)
342 2zwa_A Leucine carboxyl methyl 94.1 4.7 0.00016 43.0 21.3 148 86-233 452-637 (695)
343 2uvk_A YJHT; unknown function, 94.0 1.8 6.3E-05 41.6 16.5 137 96-235 168-346 (357)
344 1cru_A Protein (soluble quinop 93.6 6.6 0.00022 39.3 27.8 31 9-39 30-60 (454)
345 1cru_A Protein (soluble quinop 92.5 9.4 0.00032 38.1 20.1 101 118-218 27-162 (454)
346 3sbq_A Nitrous-oxide reductase 92.2 1.3 4.5E-05 44.8 12.0 110 160-272 323-454 (638)
347 3das_A Putative oxidoreductase 90.9 11 0.00039 35.9 18.4 102 117-218 31-158 (347)
348 3ott_A Two-component system se 90.7 20 0.00069 38.4 29.5 140 87-233 113-262 (758)
349 3no0_A DNA gyrase subunit A; D 88.3 15 0.00053 33.7 18.5 188 86-284 35-247 (276)
350 3q6k_A 43.2 kDa salivary prote 82.9 35 0.0012 32.9 21.9 133 97-231 124-306 (381)
351 3q6k_A 43.2 kDa salivary prote 81.2 41 0.0014 32.5 19.7 138 140-283 124-306 (381)
352 2wg3_C Hedgehog-interacting pr 79.4 27 0.00091 34.9 13.5 101 118-218 14-157 (463)
353 3qhy_B Beta-lactamase inhibito 77.5 43 0.0015 30.7 17.4 174 87-284 74-247 (282)
354 4gq2_M Nucleoporin NUP120; bet 76.7 25 0.00084 38.9 13.5 36 9-44 239-274 (950)
355 3qhy_B Beta-lactamase inhibito 73.0 57 0.0019 29.9 16.2 172 89-284 37-208 (282)
356 4gq2_M Nucleoporin NUP120; bet 69.5 56 0.0019 36.1 14.1 38 119-156 237-274 (950)
357 3uc1_A DNA gyrase subunit A; D 69.0 77 0.0026 29.8 21.4 190 86-284 53-280 (327)
358 3b7f_A Glycosyl hydrolase, BNR 66.9 92 0.0031 29.9 15.9 97 86-184 22-143 (394)
359 3zwu_A Alkaline phosphatase PH 63.3 22 0.00076 36.6 8.7 58 119-176 477-547 (592)
360 3s6n_2 SurviVal of motor neuro 63.2 14 0.00049 33.7 6.5 60 495-557 180-239 (280)
361 4fhn_B Nucleoporin NUP120; pro 62.7 37 0.0013 38.4 11.2 38 119-156 239-276 (1139)
362 4a9v_A PHOX; hydrolase, beta-p 61.8 35 0.0012 34.8 9.6 60 118-177 476-548 (592)
363 4fhn_B Nucleoporin NUP120; pro 59.4 8.8 0.0003 43.5 5.4 36 9-44 241-276 (1139)
364 4a9v_A PHOX; hydrolase, beta-p 55.5 48 0.0017 33.8 9.3 59 161-219 477-550 (592)
365 1zi0_A DNA gyrase subunit A; b 54.0 1.4E+02 0.0047 27.7 24.1 189 86-283 53-277 (307)
366 2wg3_C Hedgehog-interacting pr 52.8 1.8E+02 0.0062 28.8 15.9 110 160-274 14-160 (463)
367 3uc1_A DNA gyrase subunit A; D 52.6 1.5E+02 0.0052 27.7 19.0 142 86-231 109-279 (327)
368 3kci_A Probable E3 ubiquitin-p 46.9 2E+02 0.0068 27.5 26.7 190 86-284 62-294 (389)
369 3zwu_A Alkaline phosphatase PH 46.2 63 0.0022 33.3 8.7 58 161-218 477-549 (592)
370 3f7f_A Nucleoporin NUP120; nuc 45.1 23 0.0008 37.2 5.3 31 14-44 228-258 (729)
371 1suu_A DNA gyrase subunit A; t 41.7 2.2E+02 0.0074 26.4 23.3 190 86-284 8-232 (312)
372 4hvt_A Ritya.17583.B, post-pro 40.9 3.5E+02 0.012 28.5 18.9 189 87-285 143-383 (711)
373 3f7f_A Nucleoporin NUP120; nuc 39.0 47 0.0016 35.0 6.4 37 119-157 223-259 (729)
374 2l9b_A MRNA 3'-END-processing 37.4 18 0.00062 27.4 2.2 35 490-524 37-72 (109)
375 3dwl_G Actin-related protein 2 35.6 48 0.0016 26.9 4.6 53 484-536 82-135 (152)
376 1k8k_G P16, ARP2/3 complex 16 32.9 58 0.002 26.4 4.7 52 484-535 81-133 (151)
377 1suu_A DNA gyrase subunit A; t 27.1 3.7E+02 0.013 24.7 26.3 143 86-231 58-231 (312)
378 4hvt_A Ritya.17583.B, post-pro 23.6 6.6E+02 0.022 26.4 25.0 236 12-282 136-429 (711)
379 1q47_A Semaphorin 3A; beta pro 22.1 1.9E+02 0.0066 28.9 7.4 58 86-143 421-487 (495)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8e-42 Score=348.76 Aligned_cols=281 Identities=15% Similarity=0.267 Sum_probs=248.3
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++|++|+.||+|+|||+.+++....+++|...+..+.|+++
T Consensus 107 h~~~V--~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~----------------------- 161 (410)
T 1vyh_C 107 HRSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS----------------------- 161 (410)
T ss_dssp CSSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-----------------------
Confidence 35678 56699999999999999999999999999998888877766665555554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++|+.||.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ----~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ----CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 789999999999999999999887655 689999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--------------------CCEEEEEec
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAV 219 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--------------------~~~l~s~s~ 219 (579)
|.+++++|+|+++++|+ +.|++||+++++....+.+|...|.+++|+|+ +.++++++
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs- 315 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS- 315 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-
Confidence 99999999999999998 89999999999999999999999999999996 66888887
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
.|+.|++||++++. ++..+..+...+..+.|+ |+|.+|++++.||+|++||+.+++.+
T Consensus 316 ~D~~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~------------ 373 (410)
T 1vyh_C 316 RDKTIKMWDVSTGM-----CLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCM------------ 373 (410)
T ss_dssp TTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCC------------
T ss_pred CCCeEEEEECCCCc-----eEEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceE------------
Confidence 79999999999876 345555666677788887 99999999999999999997654321
Q ss_pred cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
..+.+|...|.+++|+|++.++ +|||.|+++++|++
T Consensus 374 -------------------------------------------~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 -------------------------------------------KTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 409 (410)
T ss_dssp -------------------------------------------EEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred -------------------------------------------EEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence 1345788899999999999999 99999999999985
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.3e-41 Score=334.57 Aligned_cols=280 Identities=15% Similarity=0.196 Sum_probs=240.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|||++|++|+.||+|+|||..++.....+..|...+..+.|+++
T Consensus 54 H~~~v--~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 108 (340)
T 1got_B 54 HLAKI--YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS----------------------- 108 (340)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-----------------------
T ss_pred CCCce--EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-----------------------
Confidence 35678 56699999999999999999999999999998888776665555555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
+.++++|+.|+.|++|++.+++ .......+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|
T Consensus 109 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp ----SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ----CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 8899999999999999998753 22233468999999999998875 889999999999999999999999999
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
...|.+++|+|+++++++|+ +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||++.++..
T Consensus 184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~- 261 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL- 261 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE-
Confidence 99999999999999999998 9999999999999999999999999999999999999998 7999999999987533
Q ss_pred ceeEEeeecC--ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058 237 ASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 237 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
....++ ...+..+.|+ |+|.+|++|+.||.|++||..+++.+
T Consensus 262 ----~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~--------------------------- 305 (340)
T 1got_B 262 ----MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA--------------------------- 305 (340)
T ss_dssp ----EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred ----EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe---------------------------
Confidence 233333 2356778887 99999999999999999997654321
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus 306 ----------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd 340 (340)
T 1got_B 306 ----------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp ----------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred ----------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence 1345788899999999999999 9999999999996
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-41 Score=359.32 Aligned_cols=346 Identities=17% Similarity=0.186 Sum_probs=263.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccc--------------------
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLE-------------------- 60 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------------- 60 (579)
+.+| .+++|||||++||+|+.||+|+|||+.++ .....+..|...+..+.|+++-.
T Consensus 59 ~~~v--~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 59 SHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CCce--EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 4678 55699999999999999999999998754 35667888888999888887610
Q ss_pred -------cccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE
Q 008058 61 -------REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY 133 (579)
Q Consensus 61 -------~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 133 (579)
.+| ...+.+++|.|.. ...|++|+.|+.|++||..++++...+ .+|...|++++|+|+|++|+
T Consensus 137 ~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 137 GTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred CCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEEE
Confidence 011 1234455555432 346999999999999999998887665 68999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeEee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-----------
Q 008058 134 SAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ----------- 193 (579)
Q Consensus 134 s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~----------- 193 (579)
+++.|++|++||+.+++.+..+. +|.+.|.+++|+|+|++|++++ ++|++||+++++.+.
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999999999888884 7999999999999999999998 899999999876543
Q ss_pred --------------------------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---
Q 008058 194 --------------------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--- 238 (579)
Q Consensus 194 --------------------------------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--- 238 (579)
.+.+|...|++++|+|+|++|++++ .|++|++||+.++......
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCS
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccC
Confidence 3357999999999999999999998 7999999999865421000
Q ss_pred ---eE-----------E--------------------------e---------ee-------------------------
Q 008058 239 ---CV-----------L--------------------------A---------ME------------------------- 244 (579)
Q Consensus 239 ---~~-----------~--------------------------~---------~~------------------------- 244 (579)
.+ . . +.
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 00 0 0 00
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee--cccCCceEEeeecccCcccccccchhhhhccccce
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (579)
.+...+.+++|+ |+|++|++|+.||+|++||+.++... .. ..+...+.+.. |+|+++ .+++++.|+.
T Consensus 446 ~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~-fspdg~----~las~s~d~~ 514 (611)
T 1nr0_A 446 PISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA-FSNNGA----FLVATDQSRK 514 (611)
T ss_dssp ECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-ECTTSS----EEEEEETTSC
T ss_pred ecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-ECCCCC----EEEEEcCCCC
Confidence 001123456666 99999999999999999999876431 11 11222222222 788888 8999999887
Q ss_pred ecCCceEEEEEeCCCCCceeEE--EecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 323 VKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
++.++.. ........ ..+|...|.+++|||||++| +|+|.|+++++|++.
T Consensus 515 v~~w~~~-------~~~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 515 VIPYSVA-------NNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEEGG-------GTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred EEEEEcC-------CCCceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECC
Confidence 6664421 00111111 23499999999999999999 999999999999985
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=326.50 Aligned_cols=281 Identities=14% Similarity=0.162 Sum_probs=241.2
Q ss_pred CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeee
Q 008058 2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
+.++| .+++|+|+ +++|++|+.|++|+||++.+++. ...+.+|...+..+.++++
T Consensus 31 H~~~V--~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----------------- 91 (321)
T 3ow8_A 31 HDDAI--WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----------------- 91 (321)
T ss_dssp SSSCE--EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------------
T ss_pred CCCcE--EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------------
Confidence 45788 56699985 67999999999999999987764 3456666555554444443
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
+..+++++.|+.|++||+.+++.+..+ ..|...+.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 92 ----------~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 92 ----------LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred ----------CCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 778999999999999999999988666 568889999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
..+...|.+++|+|+|++|++|+ |.|++||+++++.+.++.+|..+|.+++|+|++++|++++ .|+.|++||++.++
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHAN 239 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence 99999999999999999999998 8999999999999999999999999999999999999987 79999999998875
Q ss_pred cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
. ...+..+...+..+.|+ |++.+|++++.||+|++||+.+++.+.
T Consensus 240 ~-----~~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~------------------------- 284 (321)
T 3ow8_A 240 L-----AGTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH------------------------- 284 (321)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred e-----eEEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE-------------------------
Confidence 3 34555666677788888 999999999999999999987654322
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++.+|...|.+++|+|||.+| +|++.|+++++|+.
T Consensus 285 ------------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 285 ------------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred ------------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence 334677789999999999999 99999999999986
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.7e-40 Score=328.74 Aligned_cols=282 Identities=15% Similarity=0.190 Sum_probs=239.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++||+|+.||+|+|||..++.....+..+...+....|+++
T Consensus 63 H~~~V--~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~----------------------- 117 (354)
T 2pbi_B 63 HGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS----------------------- 117 (354)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-----------------------
T ss_pred CCCeE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-----------------------
Confidence 45678 66699999999999999999999999999988888766655555555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
+..+++|+.|+.+++|++.... .... ..+|...|.++.|+|++..|++++.|++|++||+.+++.+..+
T Consensus 118 ----g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 118 ----GCAIACGGLDNKCSVYPLTFDKNENMAAKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp ----SSEEEEESTTSEEEEEECCCCTTCCSGGGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----CCEEEEeeCCCCEEEEEEecccccccccccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 8889999999999999986431 1222 2479999999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 156 RASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 156 ~~~~~~v~~l~~~p--~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.+|...|.+++|+| +|++|++|+ |.|++||+++++++..+.+|...|++++|+|++.+|++++ .|++|++||++.
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~ 271 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA 271 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence 99999999999988 578999988 9999999999999999999999999999999999999998 799999999988
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccc
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
.+.. ..+........+..+.|+ |+|.+|++++.||.|++||+.+++.+.
T Consensus 272 ~~~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~~----------------------- 320 (354)
T 2pbi_B 272 DREV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRVS----------------------- 320 (354)
T ss_dssp TEEE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEEE-----------------------
T ss_pred CcEE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceEE-----------------------
Confidence 7533 222222223345677787 999999999999999999986553221
Q ss_pred hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+.+|...|.+++|+|||.+| +|+|.|+++++|+
T Consensus 321 --------------------------------~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 --------------------------------ILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA 354 (354)
T ss_dssp --------------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred --------------------------------EEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence 334788899999999999999 9999999999995
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.5e-40 Score=352.19 Aligned_cols=325 Identities=14% Similarity=0.146 Sum_probs=258.4
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..+| .+++|+|++. +|++|+.|++|++||..++++...+.+|...+..+.|+++
T Consensus 147 ~~~v--~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----------------------- 201 (611)
T 1nr0_A 147 ARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----------------------- 201 (611)
T ss_dssp SSCE--EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred CCCc--eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-----------------------
Confidence 4567 5569999997 5999999999999999999999999888877777777666
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecC------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (579)
+.+|++|+.|+.|++||+.+++....+.. +|.+.|++++|+|+|++|++++.|++|++||+.+++.+.+
T Consensus 202 ----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 202 ----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 88999999999999999999988766633 7999999999999999999999999999999988765443
Q ss_pred ------------------------------------------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008058 155 ------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (579)
Q Consensus 155 ------------------------------------------~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~ 190 (579)
+.+|...|++++|+|+|++|++++ +.|++||+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 346888999999999999999998 899999998764
Q ss_pred eeEEe-e-------------------------------------------------------------------------
Q 008058 191 KMQKF-S------------------------------------------------------------------------- 196 (579)
Q Consensus 191 ~~~~~-~------------------------------------------------------------------------- 196 (579)
....+ .
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 43221 0
Q ss_pred --------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEE
Q 008058 197 --------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 197 --------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
.|...+.+++|+|+|+++++++ .|++|++||+..+... .... ..+...+..+.|+ |+|++|+
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~-~~h~~~v~~v~fs-----pdg~~la 507 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKT-IVHPAEITSVAFS-----NNGAFLV 507 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEE-EECSSCEEEEEEC-----TTSSEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeec-cCCCCceEEEEEC-----CCCCEEE
Confidence 1234577899999999999988 7999999999875422 2233 3344567788888 9999999
Q ss_pred EEEcCCeEEEEECCC-ceeecc--cCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE
Q 008058 269 AISETGVCYIWYGQN-IEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (579)
Q Consensus 269 s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (579)
+++.|++|++|++.+ ++.+.. ...+...+.+.. |+|+++ .+++++.|+.+++|+. . .........+
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~----~lasgs~D~~v~lW~~-----~-~~~~~~~~~~ 576 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNV----RLATGSLDNSVIVWNM-----N-KPSDHPIIIK 576 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSS----EEEEEETTSCEEEEET-----T-CTTSCCEEET
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCC----EEEEEECCCcEEEEEC-----C-Ccccccchhh
Confidence 999999999999987 555433 111333333333 788888 8999999987776541 1 1011112455
Q ss_pred ecC-CCCcEEEeecCCcceeeccccceecccceee
Q 008058 346 LVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 346 ~~h-~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+| ...|.+++|+|||+ | +|++.|+++++|++
T Consensus 577 ~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV 609 (611)
T ss_dssp TSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred ccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence 689 78999999999999 8 99999999999987
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-38 Score=311.60 Aligned_cols=280 Identities=13% Similarity=0.210 Sum_probs=234.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.+| .+++|+|+|++|++|+.||+|+|||+.++..+..+..|...+....|+++
T Consensus 13 ~~~V--~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 66 (304)
T 2ynn_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------------------------ 66 (304)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC------------------------
Confidence 4678 55599999999999999999999999999999888877666655555544
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
+++|++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++++|++|+.|++|++||++++ .....+.+|...
T Consensus 67 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred ---CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 788999999999999999999988666 689999999999999999999999999999999887 455678899999
Q ss_pred eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 162 v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~--~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|.+++|+| ++.+|++|+ +.|++||++++.....+. +|...+..+.|+| ++++|++++ .|++|++||+++++
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~-- 219 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS-- 219 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE--
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc--
Confidence 99999999 678999988 999999999887666554 5668899999986 778999988 79999999999875
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
++..+..+...+..+.|+ |++.+|++++.||+|++||..+++.++
T Consensus 220 ---~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~~~--------------------------- 264 (304)
T 2ynn_A 220 ---CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEK--------------------------- 264 (304)
T ss_dssp ---EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCEEE---------------------------
T ss_pred ---cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCceee---------------------------
Confidence 445666677777888888 999999999999999999987765432
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc--eeeccccceecccceeee
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV--LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~~s~s~d~~~~~w~~~ 380 (579)
++..|...+.+++|+|+|. ++ ++|+.| .+.+|+++
T Consensus 265 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~-asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 265 ----------------------------TLNVGLERSWCIATHPTGRKNYI-ASGFDN-GFTVLSLG 301 (304)
T ss_dssp ----------------------------EECCSSSSEEEEEECTTCGGGCE-EEEETT-EEEEEECC
T ss_pred ----------------------------eccCCCccEEEEEECCCCCceEE-EEecCC-ceEEEEec
Confidence 2234556788999888875 45 777644 45667663
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=317.88 Aligned_cols=290 Identities=11% Similarity=0.081 Sum_probs=224.0
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| -+++|+|||++|++++ |+++++||.. +..+............. ........+.+++|.+
T Consensus 31 ~~v--~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~-------- 92 (344)
T 4gqb_B 31 RQL--EAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNEGFCS---AGVQTEAGVADLTWVG-------- 92 (344)
T ss_dssp SEE--EEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCGGGCS---EEEEESSCEEEEEEET--------
T ss_pred CCE--EEEEECCCCCEEEEEe-CCceEEeece----eeeeccccccCCcceee---eeeccCCCEEEEEEeC--------
Confidence 446 4559999999999888 7889999732 22222111110000000 0011123577888876
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
...+++|+.||.|++||+.+++.... ...+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+.++.+|..
T Consensus 93 --d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 --ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp --TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred --CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 34689999999999999998875322 2358999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCcc
Q 008058 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 ~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
.|++++|+|++. ++++++ +.|++||+++++....+. .|...+.+++|+|++ +++++++ .|++|++||+++++.
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC 249 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence 999999999885 677776 899999999999888774 456679999999954 5677776 799999999998764
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
. ..+..+...+.++.|+ |++ ++|++|+.||+|+|||..+++.+
T Consensus 250 ~-----~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~-------------------------- 293 (344)
T 4gqb_B 250 V-----LSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF-------------------------- 293 (344)
T ss_dssp C-----EEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred E-----EEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence 3 5566677778888898 887 57999999999999997654321
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.+|...|.+++|+|+|..+.+|+|.|+++++|++.
T Consensus 294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 2337888999999999998653899999999999984
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6e-38 Score=308.90 Aligned_cols=287 Identities=15% Similarity=0.143 Sum_probs=236.0
Q ss_pred CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccccccccccccccccccccccCccceEEeee
Q 008058 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++++| .+++|+|++ ++|++|+.|++|++|++.+ +..+..+++|...+..+.|+++
T Consensus 16 H~~~V--~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------------- 76 (319)
T 3frx_A 16 HNGWV--TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----------------- 76 (319)
T ss_dssp CSSCE--EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred ccceE--EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-----------------
Confidence 46788 556999965 8999999999999999863 3456677777766665555555
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
+.++++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||++ ++.+..+
T Consensus 77 ----------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 77 ----------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred ----------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 889999999999999999999988666 6899999999999999999999999999999985 6678888
Q ss_pred ecCCCCeeEEEEccC------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 156 RASTKGISCMAVSSD------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~------g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
.+|...|.+++|+|. +..+++++ +.|++||+++++....+.+|...|.+++|+|++++|++++ .|+.|++|
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iw 223 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW 223 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEE
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Confidence 999999999999985 44788887 8999999999999999999999999999999999999998 79999999
Q ss_pred EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccc
Q 008058 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (579)
|+.+++. +..+.++. .+..+.|+ |++.++++++.+ .+++|+++....+....+. .
T Consensus 224 d~~~~~~-----~~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~-------------~ 278 (319)
T 3frx_A 224 NLAAKKA-----MYTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE-------------F 278 (319)
T ss_dssp ETTTTEE-----EEEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECCC-------------C
T ss_pred ECCCCcE-----EEEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc-------------c
Confidence 9998763 34444443 46677887 999999888754 5999998766544322110 0
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
. + ....|...+.+++|+|||++| ++|+.|+++++|++.
T Consensus 279 ~------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 279 A------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp T------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred c------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 0 0 011355578999999999999 999999999999984
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=314.17 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=229.5
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE--e-ccccccccccccccccccccccCccceEEeeecccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--F-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+| .+++|+|+|++||+|+.|++|+|||+.++..... + .+|... +.+++|.|.
T Consensus 18 ~v--~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~------------------v~~~~~sp~----- 72 (345)
T 3fm0_A 18 RC--WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT------------------VRKVAWSPC----- 72 (345)
T ss_dssp CE--EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSC------------------EEEEEECTT-----
T ss_pred cE--EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCc------------------EEEEEECCC-----
Confidence 67 5669999999999999999999999988764322 1 334443 445555543
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeec
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRA 157 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~ 157 (579)
+.+|++|+.|+.|++||..++.. ....+.+|...|.+++|+|++++|++|+.|++|++||+.++. .+..+.+
T Consensus 73 ----g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 73 ----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp ----SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred ----CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 78999999999999999987753 223347899999999999999999999999999999998763 4567888
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
|...|.+++|+|++++|++++ +.|++||.++++ +..++.+|...|.+++|+|++++|++++ .|++|++|+.....
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPG 227 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCC
Confidence 999999999999999999998 899999998875 4578899999999999999999999998 79999999974332
Q ss_pred cc----------cceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058 234 KQ----------SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 234 ~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
.. ...++..+. .+...+..+.|+ |++..|++++.|+.|++|+..........
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------------ 290 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQP------------ 290 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTSC------------
T ss_pred CCccceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCccee------------
Confidence 11 011222332 245566777887 89999999999999999997644211000
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccceeee
Q 008058 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~ 380 (579)
. . .. ......+|...|.+++|+|++. +| +|+|.|+++++|++.
T Consensus 291 ---~------~---------------~~----------~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 291 ---T------F---------------SL----------TAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQ 334 (345)
T ss_dssp ---C------E---------------EE----------EEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEEC
T ss_pred ---e------E---------------EE----------EeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEec
Confidence 0 0 00 0001237888999999999985 77 999999999999984
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.3e-38 Score=307.00 Aligned_cols=281 Identities=21% Similarity=0.301 Sum_probs=236.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++|++|+.||.|++|+..+++....+..|...+..+.|+++
T Consensus 22 h~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 76 (312)
T 4ery_A 22 HTKAV--SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----------------------- 76 (312)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred cCCcE--EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-----------------------
Confidence 35678 55599999999999999999999999999998888776665554444444
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+|++|+.||.|++||+.+++.+..+ .+|...|.++.|+|++++|++++.|+.|++||+++++.+..+..|..+
T Consensus 77 ----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ----CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 788999999999999999999988666 679999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
|.+++|+|+++++++++ |.|++||+++++.+..+. .+..++..++|+|+++++++++ .|+.|++||+++++..
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--- 227 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL--- 227 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 99999999999999998 899999999998887764 5667899999999999999988 7999999999987633
Q ss_pred eEEeeecCc---eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058 239 CVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
..+..+. ..+...... +++.+|++|+.||.|++||+.+++.+.
T Consensus 228 --~~~~~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------------- 273 (312)
T 4ery_A 228 --KTYTGHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ--------------------------- 273 (312)
T ss_dssp --EEECSSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE---------------------------
T ss_pred --EEEEecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh---------------------------
Confidence 2332221 122223333 678999999999999999987654321
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc--ceecccceee
Q 008058 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (579)
.+.+|...|.+++|+|++.++ ++++ .|+++++|+.
T Consensus 274 ----------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 ----------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS 310 (312)
T ss_dssp ----------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred ----------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence 344788899999999999999 8775 6999999985
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-39 Score=325.41 Aligned_cols=289 Identities=16% Similarity=0.232 Sum_probs=241.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| .+++|+|+|++|++|+.||+|+|||..+++....++.|...+..+.|+++
T Consensus 65 H~~~V--~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 119 (380)
T 3iz6_a 65 HSGKV--YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN----------------------- 119 (380)
T ss_dssp CSSCE--EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-----------------------
T ss_pred cccEE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-----------------------
Confidence 35778 56699999999999999999999999999999999888877777777666
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe------EEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeE
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (579)
+.++++|+.|+.|++||+.+.. .......+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..
T Consensus 120 ----g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 120 ----GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp ----SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred ----CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 8899999999999999997532 1223457899999999999974 5699999999999999999998887
Q ss_pred e-----ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 155 F-----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 155 ~-----~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
+ .+|...|.+++|+| +++++++|+ +.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ .|++|+
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~ 274 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCR 274 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence 7 57888999999987 889999998 999999998 4577889999999999999999999999988 799999
Q ss_pred EEEcCCCccccceeEEeee-----cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeec
Q 008058 226 LWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (579)
+||+++++.. ..+... .....+..++|+ |+|.+|++|+.||.|++||..+++.+.....
T Consensus 275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------- 338 (380)
T 3iz6_a 275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-------- 338 (380)
T ss_dssp EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred EEECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEec--------
Confidence 9999987643 111111 112236678887 9999999999999999999876654321100
Q ss_pred ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
...+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus 339 -------------------------------------------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 339 -------------------------------------------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------------------------------------------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECC
T ss_pred -------------------------------------------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecC
Confidence 012688899999999999999 999999999999984
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.6e-38 Score=334.84 Aligned_cols=314 Identities=20% Similarity=0.262 Sum_probs=264.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|+|++|++++.|+.|++||. +++....+.+|...+..+.|+++
T Consensus 262 ~~~v--~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~------------------------ 314 (577)
T 2ymu_A 262 SSSV--NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------ 314 (577)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC------------------------
Confidence 4567 45599999999999999999999996 57777778777766665555555
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++++.||.|++||....... .+ .+|...|.+++|+|+|+++++++.||.|++||. +++.+..+.+|...|
T Consensus 315 ---~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 315 ---GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 388 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence 788999999999999998766543 33 579999999999999999999999999999995 688889999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|+|++|++++ +.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|++||.... ..
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~------~~ 460 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ------LL 460 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC------EE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC------EE
Confidence 9999999999999987 89999995 6778889999999999999999999999988 7999999997542 23
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
..+..+...+..++|+ |++++|++++.|+.|++||. +++.++....+...+.+.. |+|+++ .+++++.|
T Consensus 461 ~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~-~s~dg~----~l~s~~~d 529 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD 529 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSS----CEEEEETT
T ss_pred EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE-EcCCCC----EEEEEECc
Confidence 4455566677888888 99999999999999999995 5666665554443343333 688887 89999998
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
+.+++|+ ........+.+|...|.+++|+|||++| +|+|.|+++++|+
T Consensus 530 g~v~lwd---------~~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 530 KTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577 (577)
T ss_dssp SEEEEEC---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred CEEEEEe---------CCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence 8777654 1245677889999999999999999999 9999999999996
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-37 Score=315.19 Aligned_cols=302 Identities=16% Similarity=0.226 Sum_probs=235.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|||||++||+|+ +++++||++.+++.+..+..+.....................+.+++|.+.
T Consensus 64 ~~~V--~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d------ 134 (393)
T 1erj_A 64 TSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD------ 134 (393)
T ss_dssp SSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT------
T ss_pred CCEE--EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC------
Confidence 4678 5669999999999987 789999999999998887655422110000000000011224677888764
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.+|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++||+++++....+. +...+
T Consensus 135 ---g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 209 (393)
T 1erj_A 135 ---GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV 209 (393)
T ss_dssp ---SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred ---CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence 788999999999999999999887665 6899999999999999999999999999999999999888776 55689
Q ss_pred eEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEe-------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 163 SCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 163 ~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
.+++|+| +++++++|+ +.|++||+++++.+..+ .+|...|.+++|+|++++|++++ .|+.|++||++..
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~~ 288 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCCC
Confidence 9999999 899999998 89999999999887776 57999999999999999999988 7999999999865
Q ss_pred ccc-------cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058 233 KKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 233 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
... ...+...+..+...+..+.++ |++.+|++|+.||.|++||..+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~----------------- 346 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL----------------- 346 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE-----------------
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE-----------------
Confidence 321 112334445555667777887 899999999999999999987654321
Q ss_pred cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC------Ccceeeccccceecccceee
Q 008058 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+.+|...|.+++|++ ++.++ +|||.|+++++|++
T Consensus 347 --------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 347 --------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY 387 (393)
T ss_dssp --------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred --------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEECcc
Confidence 3346777888888775 78899 99999999999998
Q ss_pred e
Q 008058 380 Q 380 (579)
Q Consensus 380 ~ 380 (579)
.
T Consensus 388 ~ 388 (393)
T 1erj_A 388 K 388 (393)
T ss_dssp E
T ss_pred c
Confidence 5
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-38 Score=319.18 Aligned_cols=285 Identities=12% Similarity=0.102 Sum_probs=219.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeC------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeee
Q 008058 2 GSSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++..| -+++|||||++||+|+. |++|++|+..++.....+... ..+| ...+++++|.+
T Consensus 41 H~~~V--~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------~~~~-~~~V~~~~~s~ 104 (357)
T 4g56_B 41 MEVQI--GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------GVQT-EAGVTDVAWVS 104 (357)
T ss_dssp CCSEE--EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------EEEC-SSCEEEEEEET
T ss_pred ccCCE--EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------cCCC-CCCEEEEEEcC
Confidence 35668 45599999999999997 677888887766543221100 0112 23467788876
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 152 (579)
. ..+++++.+|.|++||+.+++.... ...+|...|++++|+|+|++|++|+.|++|++||+.+++.+
T Consensus 105 d----------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 105 E----------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp T----------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred C----------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3 3467889999999999998875421 22479999999999999999999999999999999999999
Q ss_pred eEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCC-CEEEEEecCCCeEEE
Q 008058 153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNG-KYVLSSAVGERYIAL 226 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~v 226 (579)
..+.+|...|++++|+|++. ++++++ |.|++||+++++.+..+ ..|...+.+++|+|++ .+|++++ .|+.|++
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~ 253 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSL 253 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeE
Confidence 99999999999999999875 666666 89999999998876654 4567889999999985 4666666 7999999
Q ss_pred EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
||+++++.. ..+..+...+.+++|+ |++ ++|++++.||+|+|||+++++.+.
T Consensus 254 wd~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~~----------------- 306 (357)
T 4g56_B 254 VNIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVFR----------------- 306 (357)
T ss_dssp EESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEEE-----------------
T ss_pred EECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEeE-----------------
Confidence 999987643 4555666677888887 776 679999999999999987654321
Q ss_pred cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceecccceeee
Q 008058 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+|...|.+++|+| |+.+| +|+|.|+++++|++.
T Consensus 307 ---------------------------------------~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 ---------------------------------------DLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP 342 (357)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred ---------------------------------------ECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence 125788999999998 89999 999999999999984
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-36 Score=300.25 Aligned_cols=292 Identities=14% Similarity=0.128 Sum_probs=225.8
Q ss_pred CCCcccceEEEE-----cc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccccccccccccccccccccccCcc
Q 008058 2 GSSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDY 68 (579)
Q Consensus 2 ~~~~V~~~~~~f-----s~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (579)
++.+| .+++| ++ |+++|++|+.|++|+|||+.++ .....+.+|...+..+.|+++
T Consensus 20 H~~~V--~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---------- 87 (343)
T 2xzm_R 20 HSDWV--TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---------- 87 (343)
T ss_dssp CSSCE--EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----------
T ss_pred chhhh--hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----------
Confidence 45678 45588 76 9999999999999999998753 345566666555554444443
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 148 (579)
+.++++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++||+.
T Consensus 88 -----------------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~- 148 (343)
T 2xzm_R 88 -----------------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL- 148 (343)
T ss_dssp -----------------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-
T ss_pred -----------------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-
Confidence 788999999999999999999988666 5799999999999999999999999999999997
Q ss_pred CceeeEee---cCCCCeeEEEEccCC----------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCE
Q 008058 149 GSLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 149 ~~~~~~~~---~~~~~v~~l~~~p~g----------~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 213 (579)
+....... .|...|.+++|+|++ .++++++ |.|++|| ...+....+.+|...|.+++|+|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 33333333 678899999999987 6888887 9999999 456777889999999999999999999
Q ss_pred EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
|++++ .|+.|++||+...... ...+.+. ..+..+.|+ |++.++++ +.|+.|++||+.+++.....
T Consensus 228 l~sgs-~dg~v~iwd~~~~~~~----~~~~~~~-~~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~--- 292 (343)
T 2xzm_R 228 IATGG-KDKKLLIWDILNLTYP----QREFDAG-STINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC--- 292 (343)
T ss_dssp EEEEE-TTCEEEEEESSCCSSC----SEEEECS-SCEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE---
T ss_pred EEEEc-CCCeEEEEECCCCccc----ceeecCC-CcEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE---
Confidence 99998 7999999999544322 1222222 346778887 89887764 56888999998876543200
Q ss_pred eEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008058 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (579)
.. ... .+.. .+...+|...+.+++|+|||.+| ++|+.|++
T Consensus 293 --~~------~~~------~~~~-------------------------~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~ 332 (343)
T 2xzm_R 293 --TI------EAE------PITK-------------------------AEGQKGKNPQCTSLAWNALGKKL-FAGFTDGV 332 (343)
T ss_dssp --EC------CCC------SGGG-------------------------BTTBCCSCCCEEEEEECSSSCCE-EEEETTSE
T ss_pred --Ee------ecC------cchh-------------------------hhhhcCCCCceEEEEECCCCCeE-EEecCCce
Confidence 00 000 0000 00123677789999999999999 99999999
Q ss_pred ccceeee
Q 008058 374 KRGRYVQ 380 (579)
Q Consensus 374 ~~~w~~~ 380 (579)
+++|++.
T Consensus 333 v~~w~~~ 339 (343)
T 2xzm_R 333 IRTFSFE 339 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999984
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=315.37 Aligned_cols=339 Identities=15% Similarity=0.235 Sum_probs=257.5
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEeccccccccccccccccccccccCccceE
Q 008058 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++| .+++|+|+|+ +||+|+.||.|++|++ .+++ ....+........ ..++....++++
T Consensus 45 ~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~ 114 (425)
T 1r5m_A 45 LDNI--VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA--------SSGKTTNQVTCL 114 (425)
T ss_dssp CSCC--SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEE
T ss_pred cCce--EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc--------cccCCCCceEEE
Confidence 3678 5569999999 9999999999999999 8887 3443332100000 001123467788
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008058 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 151 (579)
+|.+. +.+|++|+.+|.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 115 ~~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 115 AWSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp EECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred EEcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 88764 78899999999999999 566666555 57999999999999999999999999999999999999
Q ss_pred eeEeecCCCC---------------eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058 152 LGKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 152 ~~~~~~~~~~---------------v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 215 (579)
+..+..+... +.+++|+|++.+++.+. |.|++||+++++.+..+.+|...|.+++|+|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9988877766 99999999876444444 9999999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
+++ .|+.|++||++.++.. ..+..+...+..+.|+ |++ ++++++.||.|++||+.+++.+........
T Consensus 264 ~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 264 SAS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp EEE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred EEc-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence 988 7999999999987643 3444455567778887 888 999999999999999999987766554333
Q ss_pred EeeecccCcccccccchhhhhccccceecCCceEEEE-----EeCC-------CCCceeEEEecCCC--CcEEEeecCCc
Q 008058 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYGL-------LLKPSFQKILVNSG--EDINLNCSQDG 361 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~g~-------~~~~~~~~~~~h~~--~v~~~~~s~dg 361 (579)
.+.+.. ++++++ .+++++.++.++.++..-.. ..+. ........+.+|.. .|.+++|+|||
T Consensus 332 ~i~~~~-~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 332 PIFAGR-ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp CEEEEE-ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred cEEEEE-EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence 333322 566766 88888888866665421000 0000 00125667888876 99999999999
Q ss_pred ceeeccccceecccceeee
Q 008058 362 VLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 362 ~~l~~s~s~d~~~~~w~~~ 380 (579)
.+| ++++.|+.+++|++.
T Consensus 407 ~~l-~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 407 NKI-SVAYSLQEGSVVAIP 424 (425)
T ss_dssp SEE-EEEESSSCCEEEECC
T ss_pred ceE-EEEecCceEEEEeec
Confidence 999 999999999999973
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=299.78 Aligned_cols=287 Identities=14% Similarity=0.137 Sum_probs=215.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cc-ccccccccccccccccccccCccceEEeeecc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEF-AD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
+.++| .+++|+|+ +||+|+.|++|++||+.++ .....+ .. |... +.+++|.|.
T Consensus 13 h~~~v--~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~------------------v~~v~~sp~- 69 (330)
T 2hes_X 13 YKEKI--WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA------------------IRSVAWRPH- 69 (330)
T ss_dssp CSSCE--EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSC------------------EEEEEECTT-
T ss_pred CCCce--eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCC------------------EEEEEECCC-
Confidence 45778 55699988 9999999999999999875 344444 22 4443 445555443
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccC-------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--
Q 008058 78 RKKKRKLGSSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-- 148 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-- 148 (579)
+.+|++|+.|+.|++||+.. .+.... +.+|...|++++|+|+|++|++|+.|++|++||+..
T Consensus 70 --------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 70 --------TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp --------SSEEEEEETTSCEEEEEC-------CCCEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred --------CCEEEEEeCCCcEEEEEcccCcCccccceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 78899999999999999853 233433 468999999999999999999999999999999943
Q ss_pred --CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEecC--CCEEEEEecC
Q 008058 149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG 220 (579)
Q Consensus 149 --~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~ 220 (579)
.+++..+.+|...|.+++|+|++++|++++ +.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ .
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~ 219 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-D 219 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-T
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-C
Confidence 256778899999999999999999999998 89999999876 678889999999999999998 66888887 7
Q ss_pred CCeEEEEEcCCCcccc---ceeEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE
Q 008058 221 ERYIALWRTDGVKKQS---ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (579)
|++|++||+..+.... ..+...+.. +...+..+.|+ +++ +|++++.||.|++||..+++..
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~-~l~s~~~dg~v~iw~~~~~~~~--------- 284 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FNG-LIASVGADGVLAVYEEVDGEWK--------- 284 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TTS-CEEEEETTSCEEEEEEETTEEE---------
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CCC-EEEEEeCCCEEEEEEcCCCceE---------
Confidence 9999999987643210 112233322 45567777886 554 7999999999999996533210
Q ss_pred eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC-CcEEEeecC--Ccceeeccccceec
Q 008058 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKS 373 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~--dg~~l~~s~s~d~~ 373 (579)
.. .....+|.. .|.+++|+| ||.+| +|+|.|++
T Consensus 285 ~~-------------------------------------------~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~ 320 (330)
T 2hes_X 285 VF-------------------------------------------AKRALCHGVYEINVVKWLELNGKTIL-ATGGDDGI 320 (330)
T ss_dssp EE-------------------------------------------EEESCTTTTSCEEEEEEC-----CCE-EEEETTSE
T ss_pred EE-------------------------------------------eccccccccceEEEEEEecCCCceEE-EEecCCCc
Confidence 00 001125665 799999999 78999 99999999
Q ss_pred ccceeee
Q 008058 374 KRGRYVQ 380 (579)
Q Consensus 374 ~~~w~~~ 380 (579)
+++|++.
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999974
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-36 Score=321.53 Aligned_cols=316 Identities=21% Similarity=0.249 Sum_probs=260.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++|++++.|+.|++||. +++.+..+.+|...+..+.|+++
T Consensus 221 ~~~v--~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d------------------------ 273 (577)
T 2ymu_A 221 SSSV--RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD------------------------ 273 (577)
T ss_dssp SSCE--EEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC------------------------
Confidence 4667 45599999999999999999999996 57777788777766665555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++++.++.|++||.. ++....+ .+|...|++++|+|+++.+++++.|++|++||.. +..+..+.+|...+
T Consensus 274 ---~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 274 ---GQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV 347 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence 7889999999999999965 4444444 6899999999999999999999999999999975 55677888899999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|+|+++++++ +.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||.... ..
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~------~~ 419 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ------LL 419 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC------EE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC------EE
Confidence 9999999999999988 89999995 6778889999999999999999999999988 7999999996432 23
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
..+..+...+..+.|+ |++++|++++.||.|++||.. ++.+....++...+.+.. |+|+++ .+++++.|
T Consensus 420 ~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~-~spd~~----~las~~~d 488 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD 488 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE-ECTTSC----EEEEEETT
T ss_pred EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE-EcCCCC----EEEEEeCC
Confidence 4455566667778887 999999999999999999964 455544444333333333 678877 88999988
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+.++.++ ......+.+.+|...|.+++|+|||++| ++++.|+++++|+..
T Consensus 489 ~~i~iw~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 489 KTVKLWN---------RNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN 538 (577)
T ss_dssp SEEEEEE---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred CEEEEEc---------CCCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence 7666543 1245667888999999999999999999 999999999999974
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=293.57 Aligned_cols=239 Identities=21% Similarity=0.316 Sum_probs=214.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|++.++++++.|++|++||+.+++++..+..+...+..+.|+++
T Consensus 80 ~~~v--~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd------------------------ 133 (321)
T 3ow8_A 80 QLGV--VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD------------------------ 133 (321)
T ss_dssp SSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC------------------------
Confidence 4567 66699999999999999999999999999999888766655555555544
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.++++|+.+|.|++||+.+++....+ ..|...|.+++|+|+|++|++++.||.|++||+++++.+..+.+|..+|
T Consensus 134 ---g~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 134 ---SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp ---SSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence 888999999999999999999887666 4688899999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|++++|++|+ +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||+.+++ ++
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~-----~~ 283 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRT-----CV 283 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE-----EE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCE-----EE
Confidence 9999999999999998 8999999999999999999999999999999999999998 79999999998876 34
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
..+..+...+..+.|+ |++.+|++++.||+|++||..
T Consensus 284 ~~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence 5555566677788887 999999999999999999963
No 21
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.9e-37 Score=312.29 Aligned_cols=321 Identities=13% Similarity=0.130 Sum_probs=243.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++|+|+|++|++|+.||.|++||..+++....+.. + ...++.+.+.+ +.+|+
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------------~---~~~~~~~~~~~--------~~~l~ 113 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-----------------A---DYTAVDTAKLQ--------MRRFI 113 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-----------------C---CEEEEEEECSS--------SCEEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-----------------C---CceEEEEEecC--------CCEEE
Confidence 49999999999999999999999987654322221 1 22333333332 78899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
+|+.+|.|++||+.+++....+ .+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 114 ~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 114 LGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999999999999998887544 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEE---------------------EecCCCEEEEEecCCCeE
Q 008058 171 GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~---------------------~~~~~~~l~s~s~~d~~i 224 (579)
+++|++++ |.|++||+++++.+..+.. |...|.++. |+|+++++++++ .|+.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 271 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVI 271 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeE
Confidence 99999988 8999999999999988875 344455554 568899999887 79999
Q ss_pred EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCcee-ecccCC-ceEEeeecc
Q 008058 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTKA-TKILSSSED 301 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~ 301 (579)
++||+++++.. . .....+...+.++.|+ |++. +|++++.||.|++||+.+++. +..... ....+.+.
T Consensus 272 ~i~d~~~~~~~---~-~~~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~- 341 (420)
T 3vl1_A 272 TVHNVFSKEQT---I-QLPSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV- 341 (420)
T ss_dssp EEEETTTCCEE---E-EECCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred EEEECCCCcee---E-EcccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence 99999887633 1 1223345567778887 8888 999999999999999988753 332221 11111111
Q ss_pred cCcccccccchhhhhccccceecCCceEEEEEeCCCC-----CceeEEEecCCCCcEEEeecCCcc---eeeccccceec
Q 008058 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-----KPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKS 373 (579)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~ 373 (579)
+.++++ .+++++.|+.++.|+.. .+... ......+..|...+.+++|+|||. .+ ++.+.++.
T Consensus 342 -~~~~~~----~l~s~~~d~~v~iw~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~ 411 (420)
T 3vl1_A 342 -YFAAGA----LFVSSGFDTSIKLDIIS----DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNF 411 (420)
T ss_dssp -EEETTE----EEEEETTTEEEEEEEEC----CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTE
T ss_pred -EeCCCC----EEEEecCCccEEEEecc----CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEcCCce
Confidence 133444 78888888766665421 11101 122334667888999999999999 56 44555889
Q ss_pred ccceeeee
Q 008058 374 KRGRYVQN 381 (579)
Q Consensus 374 ~~~w~~~~ 381 (579)
+.+|++.+
T Consensus 412 ~~~~~~~~ 419 (420)
T 3vl1_A 412 CALYNLSN 419 (420)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 99998853
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-35 Score=294.77 Aligned_cols=319 Identities=10% Similarity=0.055 Sum_probs=247.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|||++++++..++.+.+|+............|...+. ++.|.+.
T Consensus 9 ~~~v--~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~------ 62 (337)
T 1gxr_A 9 SKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVC------------------AVTISNP------ 62 (337)
T ss_dssp EEEC--CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCC------------------EEEECSS------
T ss_pred CCce--eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceE------------------EEEEecC------
Confidence 4577 5559999999999988877777776554444433334554444 4555432
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR 156 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~ 156 (579)
+.++++++ +|.|++||+.+++....+ ..+|...|.+++|+|+++++++++.||.|++||+.+++ ....+.
T Consensus 63 ---~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 63 ---TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp ---SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred ---CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 77888888 999999999876532221 12688999999999999999999999999999999887 566788
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
.|...|.+++|+|+++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|++||+++++.
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQ 217 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCce
Confidence 8999999999999999999987 8999999999999999999999999999999999999988 799999999998763
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
. ....+.. .+..+.|+ |++.++++++.||.|++||+.+++.... ..+...+.... ++++++ .+
T Consensus 218 ~-----~~~~~~~-~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~----~l 280 (337)
T 1gxr_A 218 L-----QQHDFTS-QIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLK-FAYCGK----WF 280 (337)
T ss_dssp E-----EEEECSS-CEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEE-ECTTSS----EE
T ss_pred E-----eeecCCC-ceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEEE-ECCCCC----EE
Confidence 3 3334433 45667777 9999999999999999999998865432 22222222222 566666 78
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++++.++.++.++ ....... ....|...+.+++|+|||.++ ++++.|+.+++|++
T Consensus 281 ~~~~~dg~i~~~~--------~~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 281 VSTGKDNLLNAWR--------TPYGASI-FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSEEEEEE--------TTTCCEE-EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred EEecCCCcEEEEE--------CCCCeEE-EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence 8888877655543 1111222 234588899999999999999 99999999999987
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-35 Score=301.85 Aligned_cols=239 Identities=18% Similarity=0.251 Sum_probs=213.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.+| .+++|+|+|++|++|+.||+|+|||+.+++++..+.+|...+..+.|+++
T Consensus 149 h~~~V--~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~----------------------- 203 (410)
T 1vyh_C 149 HTDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN----------------------- 203 (410)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC-----------------------
Confidence 35678 55699999999999999999999999999999888877666555555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++|+.|+.|++||+.++.++..+ .+|...|.++.|+|++.+|++|+.|++|++||+.+++....+.+|...
T Consensus 204 ----~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~ 278 (410)
T 1vyh_C 204 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278 (410)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence 788999999999999999999988666 689999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccC--------------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058 162 ISCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 162 v~~l~~~p~--------------------g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
|.+++|+|+ |.++++|+ +.|++||+++++++.++.+|...|++++|+|++++|++++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s- 357 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA- 357 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-
Confidence 999999996 66899888 8999999999999999999999999999999999999998
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
.|+.|++||+.+++.. ..+..+...+.++.|+ |++.+|++|+.||+|++|+.
T Consensus 358 ~D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence 7999999999877633 4555666678888888 99999999999999999985
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=289.34 Aligned_cols=294 Identities=14% Similarity=0.137 Sum_probs=232.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++|++|+.||.|+|||+.+++....+..|...+..+.|+++
T Consensus 31 h~~~v--~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 85 (369)
T 3zwl_B 31 HERPL--TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF----------------------- 85 (369)
T ss_dssp CSSCE--EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred eeceE--EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-----------------------
Confidence 45788 55699999999999999999999999999999988877665555555444
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc------
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------ 150 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~------ 150 (579)
+.++++++.||.|++||+.+++.+..+. |...|.+++|+|+++++++++.+ |.|++||+..+.
T Consensus 86 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 ----TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp ----SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 7889999999999999999999887764 78899999999999999999999 999999987653
Q ss_pred -----eeeEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058 151 -----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 151 -----~~~~~~~~~~--~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
....+..|.. .+.+++|+|+++++++++ |.|++||+++ ++.+..+..|...|.+++|+|++++|++++ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 238 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-R 238 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-C
Confidence 3444555666 899999999999999987 8999999998 788999999999999999999999999988 7
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeec
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (579)
|+.|++||+++++.. ..+. ....+..+.|+ |++.++++++.++...+|........ ....
T Consensus 239 d~~i~v~d~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~i~---- 298 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVL-----KKYE-TDCPLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-----FEAR---- 298 (369)
T ss_dssp TSEEEEEETTTCCEE-----EEEE-CSSCEEEEEEC-----SSSSEEEEEECCC------------------CEEE----
T ss_pred CceEEEEECCCCcee-----eeec-CCCCceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-----ceeE----
Confidence 999999999987643 3343 34445667777 99999999999986555543221100 0000
Q ss_pred ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+..........+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus 299 --------------------------------~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 299 --------------------------------FYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFE 345 (369)
T ss_dssp --------------------------------EEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEEC
T ss_pred --------------------------------EEecCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECc
Confidence 00011122333566788899999999999999 999999999999984
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=311.23 Aligned_cols=332 Identities=11% Similarity=0.112 Sum_probs=249.9
Q ss_pred cccceEEEEccCCC-EEEEE----------eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEe
Q 008058 5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 5 ~V~~~~~~fs~dg~-~las~----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
+| .+++|+|+|+ +|++| +.|+.|+|||+.++.....+. ...| ...+.+++|
T Consensus 14 ~v--~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------~~~~-~~~v~~~~~ 75 (416)
T 2pm9_A 14 RT--ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------SLQV-DSKFNDLDW 75 (416)
T ss_dssp ES--CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------CCCC-SSCEEEEEE
T ss_pred hc--ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------EEec-CCceEEEEE
Confidence 46 3459999997 99999 889999999998775221110 0011 335667777
Q ss_pred eecccccccccCCcEEEEEECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 008058 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~ 148 (579)
.+. +.+|++|+.+|.|++||+.+ .+.+..+ .+|...|++++|+|+ +++|++++.||.|++||+.+
T Consensus 76 s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 76 SHN---------NKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CSS---------SSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred CCC---------CCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 654 77899999999999999988 3344444 689999999999998 89999999999999999998
Q ss_pred Cc------eeeE---eecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------CCCEEEEEEecC
Q 008058 149 GS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDN 210 (579)
Q Consensus 149 ~~------~~~~---~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h------~~~v~~l~~~~~ 210 (579)
++ .... +..|...|.+++|+|+ +.++++++ |.|++||+++++.+..+..| ...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence 76 3332 4678889999999999 78899988 89999999999999888876 789999999999
Q ss_pred C-CEEEEEecCCC---eEEEEEcCCCccccceeEEeee-cCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCc
Q 008058 211 G-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 211 ~-~~l~s~s~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+ .++++++ .|+ .|++||++.+... ...+. .+...+..+.|+ | ++.+|++++.||.|++||++++
T Consensus 226 ~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 226 NSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp CTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECSSSC
T ss_pred CCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeCCCC
Confidence 7 5777776 688 9999999986422 22343 445566777887 7 8999999999999999999999
Q ss_pred eeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCC----------------------------
Q 008058 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL---------------------------- 336 (579)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~---------------------------- 336 (579)
+.+.....+...+.+.. +++++.. .+++++.|+.++.++..-......
T Consensus 296 ~~~~~~~~~~~~v~~~~-~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 296 EQLSQFPARGNWCFKTK-FAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp CEEEEEECSSSCCCCEE-ECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred ccceeecCCCCceEEEE-ECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 88776655443333333 5666621 888999988776654211000000
Q ss_pred CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
....+ .....|...+..++|+|||++| ++++.|+++++|++.
T Consensus 372 ~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 372 SVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNPK 413 (416)
T ss_dssp CSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCCC
T ss_pred ccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEec
Confidence 00000 1112266778899999999999 999999999999984
No 26
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-34 Score=283.86 Aligned_cols=289 Identities=16% Similarity=0.211 Sum_probs=230.8
Q ss_pred CCCcccceEEEEccC-CCEEEEEeCCCcEEEEECCCCe-----EEEEeccccccccccccccccccccccCccceEEeee
Q 008058 2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++++| .+++|+|+ +++||||+.||+|+|||+.+++ +...+++|...+..+.|+++
T Consensus 37 H~~~V--~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----------------- 97 (340)
T 4aow_A 37 HNGWV--TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----------------- 97 (340)
T ss_dssp CSSCE--EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-----------------
T ss_pred ccCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-----------------
Confidence 46789 55599997 6899999999999999987643 45566666655555544444
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eE
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GK 154 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~ 154 (579)
+.++++++.||.|++|+...+...... ..+...+..+.+++++++|++++.|+.+++||+...... ..
T Consensus 98 ----------g~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 98 ----------GQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ----------CCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 889999999999999999998877555 457788999999999999999999999999998765443 34
Q ss_pred eecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 155 FRASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g--~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
..+|...+.+++|++++ .++++++ +.|++||+++++.+..+.+|.++|++++|+|++++|++++ .|+.|++||++
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~ 245 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLN 245 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEec
Confidence 56788899999999865 4566666 8999999999999999999999999999999999999998 79999999999
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
+.+.. ..+.++. .+..+.|+ |++. +++++.||.|++||++++..+...+....
T Consensus 246 ~~~~~-----~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------- 298 (340)
T 4aow_A 246 EGKHL-----YTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI--------------- 298 (340)
T ss_dssp TTEEE-----EEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-----------------
T ss_pred cCcee-----eeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------
Confidence 87633 4444443 45677776 7665 55667899999999987766543321100
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.....+|...|.+++|+|||++| +||+.|++|++|++.
T Consensus 299 -------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 299 -------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVT 336 (340)
T ss_dssp ------------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred -------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCC
Confidence 00233688899999999999999 999999999999984
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.1e-35 Score=317.24 Aligned_cols=299 Identities=18% Similarity=0.197 Sum_probs=231.4
Q ss_pred CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCC-----eEEEEeccccccccccccccccccccccCccceEEeee
Q 008058 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKG-----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++.+| .+++|+|++ ++|++|+.||+|+||++.++ .....+.+|...+.++.|+++
T Consensus 381 H~~~V--~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------------- 441 (694)
T 3dm0_A 381 HTDMV--TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----------------- 441 (694)
T ss_dssp CSSCE--EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred CCcee--EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-----------------
Confidence 56788 555999875 79999999999999998753 445666666665555555544
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
+.+|++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||..........
T Consensus 442 ----------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 442 ----------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ----------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 889999999999999999999988666 589999999999999999999999999999998654333222
Q ss_pred ---ecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 156 ---RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 156 ---~~~~~~v~~l~~~p~g--~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
.+|...|.+++|+|++ ..+++++ +.|++||+++++....+.+|.+.|++++|+|++++|++++ .|+.|++||
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd 589 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWD 589 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Confidence 3577899999999987 5788887 8999999999999999999999999999999999999998 799999999
Q ss_pred cCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccc
Q 008058 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
+++++.. ..+.++ ..+..++|+ |++.++++++ ++.|++||+++++.+........... .
T Consensus 590 ~~~~~~~-----~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------~ 648 (694)
T 3dm0_A 590 LAEGKKL-----YSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------E 648 (694)
T ss_dssp TTTTEEE-----ECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred CCCCceE-----EEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------c
Confidence 9987633 344443 356778887 8888877665 56799999999887655432110000 0
Q ss_pred ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.....+ ......+...+.+++|||||.+| +|||.|+++++|++.
T Consensus 649 -------~~~~~~--------------------~~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 649 -------KADNSG--------------------PAATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred -------cccccc--------------------cccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence 000000 00011233357899999999999 999999999999984
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-34 Score=283.20 Aligned_cols=230 Identities=14% Similarity=0.075 Sum_probs=198.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.++++|+.||.|++||+.++..+..+ ..|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 888999999999999999999988666 5799999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+|+|+++++++|+ ++|++||++++ .....+.+|...|.+++|+| ++.+|++++ .|++|++||++..... ...
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~ 179 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTL 179 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEE
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---cee
Confidence 9999999999998 89999999887 55677899999999999999 578889887 7999999999876543 122
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
. .++...+..+.+.+. +++.+|++++.||+|++||+++++.+.
T Consensus 180 ~-~~~~~~v~~~~~~~~---~~~~~l~s~s~D~~i~iWd~~~~~~~~--------------------------------- 222 (304)
T 2ynn_A 180 T-TGQERGVNYVDYYPL---PDKPYMITASDDLTIKIWDYQTKSCVA--------------------------------- 222 (304)
T ss_dssp E-CCCTTCEEEEEECCS---TTCCEEEEEETTSEEEEEETTTTEEEE---------------------------------
T ss_pred c-cCCcCcEEEEEEEEc---CCCCEEEEEcCCCeEEEEeCCCCccce---------------------------------
Confidence 2 233344555666521 478899999999999999987654321
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
++.+|...|..++|+|++.+| +|++.|+++++|++.
T Consensus 223 ----------------------~~~~h~~~v~~~~~~p~~~~l-~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 223 ----------------------TLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSS 258 (304)
T ss_dssp ----------------------EEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETT
T ss_pred ----------------------eeCCCCCCEEEEEECCCCCEE-EEEcCCCeEEEEECC
Confidence 345788899999999999999 999999999999985
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8e-35 Score=292.77 Aligned_cols=318 Identities=12% Similarity=0.049 Sum_probs=237.3
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.++| .+++|+|+|++|++|+.||.|++||..+++ ....+..|...+. ++.|.+.
T Consensus 7 ~~~~i--~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~--- 63 (372)
T 1k8k_C 7 LVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT------------------GVDWAPD--- 63 (372)
T ss_dssp CSSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE------------------EEEEETT---
T ss_pred cCCCe--EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc------------------EEEEeCC---
Confidence 46789 555999999999999999999999999887 7777776655544 4445442
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeE-
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK- 154 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~- 154 (579)
+.++++++.||.|++||+.+++..... ..+|...|.+++|+|++++|++++.||.|++||+..+.. ...
T Consensus 64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 788999999999999999998754333 357899999999999999999999999999999988763 233
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC------------------CCCeeeEEeecCCCCEEEEEEecCCCEE
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~------------------~~~~~~~~~~~h~~~v~~l~~~~~~~~l 214 (579)
...|...|.+++|+|+++++++++ |.|++||+ ..++.+..+.+|...|.+++|+|++++|
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 356788999999999999999987 89999995 4678888999999999999999999999
Q ss_pred EEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC--ce--eeccc
Q 008058 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT 290 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~ 290 (579)
++++ .|+.|++||+++++. +..+..+...+..+.|+ |++.+++++ .||.|++|++.+ ++ .+...
T Consensus 218 ~~~~-~d~~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 218 AWVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEe-CCCEEEEEECCCCce-----eEEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9988 799999999988763 34555666667788887 899988877 999999999987 53 22222
Q ss_pred CCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE-ecCCCCcEEEeec-CCc---ceee
Q 008058 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI-LVNSGEDINLNCS-QDG---VLLP 365 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~h~~~v~~~~~s-~dg---~~l~ 365 (579)
......... ..... .+.. ..+ ..+... +.. .+. ..+ .+|...|.+++|. ++| .+|
T Consensus 286 ~~~~~~~~~-------~~~~~-~~~~-~~~-----~~~~~~---~~~-~~~-~~~~~~h~~~v~~~~~~~~~g~~~~~l- 345 (372)
T 1k8k_C 286 DVPKQSSQR-------GLTAR-ERFQ-NLD-----KKASSE---GSA-AAG-AGLDSLHKNSVSQISVLSGGKAKCSQF- 345 (372)
T ss_dssp CCC---------------CHH-HHHH-HCC-----CCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEE-
T ss_pred Cccccchhh-------hcchh-hhhh-hcc-----cccccc---cCc-ccc-ccccccccCCcceeEEecCCCcceeeE-
Confidence 111100000 00000 0000 000 000000 000 000 112 3899999999855 777 899
Q ss_pred ccccceecccceeee
Q 008058 366 MSQSLLKSKRGRYVQ 380 (579)
Q Consensus 366 ~s~s~d~~~~~w~~~ 380 (579)
+|++.|+++++|++.
T Consensus 346 ~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEETTSEEEEEEHH
T ss_pred EEecCCCceEEEEec
Confidence 999999999999984
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=287.91 Aligned_cols=239 Identities=9% Similarity=0.062 Sum_probs=193.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccccccccccccccccccccccCccceEEeeecccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
++| .+++|+||+ +|++|+.||+|+|||+.+++....+ .+|...+. +++|.+.
T Consensus 83 ~~v--~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~------------------~v~~spd--- 138 (344)
T 4gqb_B 83 AGV--ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS------------------TVSVLSS--- 138 (344)
T ss_dssp SCE--EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE------------------EEEECTT---
T ss_pred CCE--EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE------------------EEEECCC---
Confidence 567 556999986 7889999999999999988754433 24444444 4455442
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR-- 156 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~-- 156 (579)
+.+|++|+.||.|++||+.+++++..+ .+|.+.|++++|+|++. +|++++.|++|++||+++++....+.
T Consensus 139 ------g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 139 ------GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence 889999999999999999999998766 68999999999999885 68999999999999999999888764
Q ss_pred cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCC
Q 008058 157 ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 157 ~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~ 232 (579)
.+...+.+++|+|+ ++++++|+ |.|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC
Confidence 34557999999995 56788876 8999999999999999999999999999999984 677777 7999999999887
Q ss_pred ccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCce
Q 008058 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~ 285 (579)
+. ..+..|...+..+.|+ |++. +|++++.||+|++|++++..
T Consensus 291 ~~------~~~~~H~~~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 291 EL------FRSQAHRDFVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EE------EEECCCSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC--
T ss_pred cE------EEEcCCCCCEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 53 2344555667788887 8876 56789999999999987643
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-34 Score=336.54 Aligned_cols=324 Identities=15% Similarity=0.181 Sum_probs=262.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|||||+++|+|+.||+|+|||+.+++.+..+.+|...+..+.|+++
T Consensus 615 ~~~v--~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 668 (1249)
T 3sfz_A 615 TDAV--YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------------------------ 668 (1249)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC------------------------
Confidence 4677 56699999999999999999999999999999999888776666666655
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+| ++.++++++.||.|++||+.+++.+..+.+|..
T Consensus 669 ---~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 669 ---DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred ---CCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence 889999999999999999999988776 57999999999999 556899999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-------------------------------------------
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------------------------------------------- 195 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~------------------------------------------- 195 (579)
.|++++|+|+++++++++ |.|++||+++++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 999999999999999998 89999999876544332
Q ss_pred ------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC
Q 008058 196 ------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 196 ------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
.+|...|.+++|+|+++++++++ .|+.|++|++.++.. ...+..+...+..+.|+ |+
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----pd 893 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----PD 893 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----TT
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----CC
Confidence 16788899999999999999987 699999999988753 34556667778888888 99
Q ss_pred CcEEEEEEcCCeEEEEECCCceeecccCCc-------------------------------e------EEeeecccCccc
Q 008058 264 GLYVLAISETGVCYIWYGQNIEELRNTKAT-------------------------------K------ILSSSEDVNSKS 306 (579)
Q Consensus 264 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------~------~~~~~~~~~~~~ 306 (579)
|.+|++++.||.|++|++.+.......... . ..+.+ ..++++
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~ 972 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPH 972 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECTT
T ss_pred CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcCC
Confidence 999999999999999997643211100000 0 00011 114555
Q ss_pred ccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
++ .+++|+.+|.++.++ .........+.+|...|.+++|+|||+++ ++++.|+++++|++.+
T Consensus 973 g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 973 LE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp SS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTT
T ss_pred CC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCC
Confidence 55 677777766554432 22345566777899999999999999999 9999999999999853
No 32
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-34 Score=290.88 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=214.0
Q ss_pred CcccceEEEEccCCCEEEEEeCCC-------cEEEEECCCCeE--------EE--EeccccccccccccccccccccccC
Q 008058 4 SNIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQV--------QT--EFADIASTETTSLYGNRLEREHLSV 66 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg-------~i~vwd~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (579)
-|| .+++|+|||++|++|+.|. .|++|++..+.. .. .+..+..
T Consensus 15 ~PV--~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 74 (365)
T 4h5i_A 15 YPA--YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD------------------ 74 (365)
T ss_dssp SCE--EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC------------------
T ss_pred CCE--EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC------------------
Confidence 488 6779999999999998643 599999875531 11 1222221
Q ss_pred ccceEEeeecccccccccCCcEEEE-----------EECCCeEEEEEccCCeEEEEe--------cCCCCCCEEEEEEcc
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVL-----------GTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFAT 127 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~-----------~~~~g~i~iwd~~~~~~~~~~--------~~~h~~~V~~l~~~~ 127 (579)
.+.++.+. +..+++ ++.++.+++|++.+....... ...+...+.+++|+|
T Consensus 75 ~v~s~~~~-----------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 75 SPTAIDAS-----------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp CCCEEEEE-----------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred ceEEEEeC-----------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 22333332 333444 345777999998765321111 123445699999999
Q ss_pred CCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEE--eecCCCCE
Q 008058 128 HGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAV 202 (579)
Q Consensus 128 ~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~--~~~h~~~v 202 (579)
||+++++++ .|++|++||+.+++.+..+. |...|.+++|+|||+++++++ +.+.+|+..+++.+.. ..+|...|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence 999977554 68999999999999998886 777899999999999999998 8888998888876543 45788899
Q ss_pred EEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 203 RFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 203 ~~l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
.+++|+|+++++++++. |+ .++.|++...... ......+..+...+.+++|+ |+|++||+|+.||+|+|
T Consensus 223 ~~v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 223 SKINFIADDTVLIAASL-KKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIAL 295 (365)
T ss_dssp EEEEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEE
T ss_pred EEEEEcCCCCEEEEEec-CCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEE
Confidence 99999999999999884 65 6888998776532 11233455566677888898 99999999999999999
Q ss_pred EECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008058 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
||+++++.+... +.+|...|++++||
T Consensus 296 wd~~~~~~~~~~------------------------------------------------------~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 296 VKLKDLSMSKIF------------------------------------------------------KQAHSFAITEVTIS 321 (365)
T ss_dssp EETTTTEEEEEE------------------------------------------------------TTSSSSCEEEEEEC
T ss_pred EECCCCcEEEEe------------------------------------------------------cCcccCCEEEEEEC
Confidence 999877654321 12788899999999
Q ss_pred CCcceeeccccceecccceee
Q 008058 359 QDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|||++| +|+|.|+++++|++
T Consensus 322 pdg~~l-aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 322 PDSTYV-ASVSAANTIHIIKL 341 (365)
T ss_dssp TTSCEE-EEEETTSEEEEEEC
T ss_pred CCCCEE-EEEeCCCeEEEEEc
Confidence 999999 99999999999998
No 33
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-34 Score=319.35 Aligned_cols=250 Identities=13% Similarity=0.221 Sum_probs=216.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+++| .+++|+|+|++||+|+.||.|+|||+.++.....+..|...+.. +.|.+.
T Consensus 13 ~~~v--~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~------------------~~~s~~------ 66 (814)
T 3mkq_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA------------------GKFIAR------ 66 (814)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------------------EEEEGG------
T ss_pred CCce--EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEE------------------EEEeCC------
Confidence 5678 55699999999999999999999999999999988876655554 444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
+.+|++|+.+|.|++||+.+++.+..+ .+|.+.|++++|+|++++|++++.||.|++||+.++ .....+.+|...
T Consensus 67 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 788999999999999999999988766 579999999999999999999999999999999887 677788899999
Q ss_pred eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 162 v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~--~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|.+++|+| +++.+++++ |.|++||+.+++....+..|. ..+..++|+| +++++++++ .|+.|++||+.+++.
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~- 220 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC- 220 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE-
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE-
Confidence 99999999 888999887 899999999888877776655 8899999999 999999987 799999999988763
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
...+..+...+.++.|+ |++.+|++++.||.|++||..+++.+......
T Consensus 221 ----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 221 ----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp ----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred ----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 34555566677888887 99999999999999999999998877655443
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.9e-34 Score=281.42 Aligned_cols=236 Identities=19% Similarity=0.296 Sum_probs=202.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.++| .+++|+|+|++|++|+.|+.|++|++.++. ....+.+|.. .+.++.|.+
T Consensus 97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~--- 153 (340)
T 1got_B 97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG------------------YLSCCRFLD--- 153 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS------------------CEEEEEEEE---
T ss_pred CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc------------------cEEEEEECC---
Confidence 4567 667999999999999999999999998653 3444444433 344566654
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
...+++++.|+.|++||+.+++.+..+ .+|.+.|.+++|+|+++++++|+.|++|++||+++++.+.++.+|
T Consensus 154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 345899999999999999999988666 689999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
...|++++|+|++++|++|+ |.|++||+++++.+..+.. +...|.+++|+|+++++++++ .|+.|++||+.+++.
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR 304 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence 99999999999999999998 8999999999988877752 335799999999999999988 799999999988763
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
...+..+...+.++.|+ |+|.+|++|+.||+|++||
T Consensus 305 -----~~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 -----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----EEEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred -----eeEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence 34555666778888898 9999999999999999996
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.3e-34 Score=289.04 Aligned_cols=282 Identities=12% Similarity=0.103 Sum_probs=220.3
Q ss_pred CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEec--cccccccccccccccccccccCccceEEeeecccc
Q 008058 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .+++|+|+| ++|++|+.||.|+|||+.+++....+. +|.. .+.+++|.+.+
T Consensus 73 ~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~-- 130 (383)
T 3ei3_B 73 DRRV--TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD------------------AITGMKFNQFN-- 130 (383)
T ss_dssp SSCE--EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC------------------BEEEEEEETTE--
T ss_pred CCCE--EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC------------------ceeEEEeCCCC--
Confidence 4678 566999999 999999999999999999888776654 2333 45566666532
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
+..+++++.||.|++||+.+.... .+. .+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+
T Consensus 131 ------~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~ 202 (383)
T 3ei3_B 131 ------TNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL 202 (383)
T ss_dssp ------EEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred ------CCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence 678999999999999999965432 332 345588999999999999999999999999998 6888899999
Q ss_pred CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC----CeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEc
Q 008058 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~ 229 (579)
|...|.+++|+|+++ ++++++ +.|++||+++ +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||+
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~ 280 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSS 280 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEET
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEEC
Confidence 999999999999999 888887 8999999998 5666666 6999999999999 999999988 6999999999
Q ss_pred CCCccccceeEEeee--------------cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058 230 DGVKKQSASCVLAME--------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
++++... ...... ++...+..+.++ |++++ +++.||.|++||+.+++.+.....
T Consensus 281 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--- 348 (383)
T 3ei3_B 281 YDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQLRD--- 348 (383)
T ss_dssp TBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEEECB---
T ss_pred CCCcccc--ccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeeeecC---
Confidence 9876431 111000 111122234444 66666 777899999999887765332210
Q ss_pred EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008058 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (579)
..|...+..++|+|||.+| ++++ |+.++
T Consensus 349 --------------------------------------------------~~~~~~~~~~~~s~~g~~l-~s~s-d~~i~ 376 (383)
T 3ei3_B 349 --------------------------------------------------PNAAGIISLNKFSPTGDVL-ASGM-GFNIL 376 (383)
T ss_dssp --------------------------------------------------TTBCSCCCEEEECTTSSEE-EEEE-TTEEE
T ss_pred --------------------------------------------------CCCCceEEEEEEecCccEE-EEec-CCcEE
Confidence 0134456777999999999 9997 99999
Q ss_pred ceeee
Q 008058 376 GRYVQ 380 (579)
Q Consensus 376 ~w~~~ 380 (579)
+|++.
T Consensus 377 iw~~~ 381 (383)
T 3ei3_B 377 IWNRE 381 (383)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 36
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.3e-34 Score=292.64 Aligned_cols=304 Identities=13% Similarity=0.151 Sum_probs=247.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+++++|++|++|+.||+|++||+.++++...+.+|...+. ++.|. +..+++
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~-----------~~~l~s 174 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW------------------SSQMR-----------DNIIIS 174 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE------------------EEEEE-----------TTEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEE------------------EEEec-----------CCEEEE
Confidence 5777899999999999999999999999998887665544 33332 567999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g 171 (579)
|+.||.|++||+.+++.+..+ .+|...|.++.|+ ++.+++|+.||+|++||+.+++.+..+.+|...|.++++ ++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 999999999999999988766 5899999999995 568999999999999999999999999999999999999 67
Q ss_pred CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 172 ~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
+++++|+ |.|++||+++++.+.++.+|...|.++.| ++.++++++ .|+.|++||+++++.. ..+..+...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~ 321 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCI-----HTLTGHQSL 321 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEE-----EEECCCCSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEE-----EEEcCCccc
Confidence 8888887 89999999999999999999999999999 788999988 7999999999987633 444444444
Q ss_pred eEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC---ceEEeeecccCcccccccchhhhhccccceecCC
Q 008058 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
+..+.+ ++.++++++.||.|++||+.+++.+..... +...+.+.. + ++. .+++++.||.++.+
T Consensus 322 v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 322 TSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred EEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence 554444 567999999999999999999987766543 222222222 2 223 78899888876664
Q ss_pred ceEEEEEeCCCCCceeEEE-----ecCCCCcEEEeecCCcceeeccccceec----ccceeee
Q 008058 327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ 380 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~ 380 (579)
+ .........+ .+|...|.+++|+|+|.++ ++++.|++ +.+|++.
T Consensus 388 d--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 388 D--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp E--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred E--------CCCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence 4 2223334444 3688889999999999999 99999998 8899874
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-35 Score=298.05 Aligned_cols=241 Identities=8% Similarity=0.078 Sum_probs=190.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++|+++ +|+|+|++||+|+.||.|+|||+.++ ++...+.+|...+..+.|+++
T Consensus 11 ~~~v~~~--~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------------------- 66 (377)
T 3dwl_C 11 PKPSYEH--AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---------------------- 66 (377)
T ss_dssp SSCCSCC--EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----------------------
T ss_pred CCcEEEE--EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----------------------
Confidence 4688555 99999999999999999999999988 666667666555554444443
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeE
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~ 154 (579)
+.+|++++.||.|++||+.+++ ....+ .+|...|++++|+|++++|++++.|+.|++||+.+++ ....
T Consensus 67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 7789999999999999999887 34333 5799999999999999999999999999999999887 4677
Q ss_pred eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECC------------------CCeeeEEeecCCCCEEEEEEecCCCE
Q 008058 155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 155 ~~~-~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~------------------~~~~~~~~~~h~~~v~~l~~~~~~~~ 213 (579)
+.. |...|.+++|+|++++|++++ +.|++||++ .++++..+ +|...|.+++|+|++++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 777 899999999999999999988 899999985 35566677 89999999999999999
Q ss_pred EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
|++++ .|+.|++||+.+++.. ...+..+..+...+..+.|+ |++++|++++.++.+ +|+..
T Consensus 220 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 220 LAYAG-HDSSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEE-TTTEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred EEEEe-CCCcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence 99988 7999999999988752 11134455666667788887 899999998877666 66554
No 38
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.2e-34 Score=288.57 Aligned_cols=298 Identities=11% Similarity=0.124 Sum_probs=236.0
Q ss_pred CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecc
Q 008058 2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 2 ~~~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
+.++| .+++|+|+ ...+++++.++.|+|||+.+++.+..+..+.. ......+.+++|.+..
T Consensus 17 h~~~v--~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 17 HNQPL--FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------------ADADENFYTCAWTYDS 81 (366)
T ss_dssp TCSCE--EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------------SCTTCCEEEEEEEECT
T ss_pred CCCce--EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------------cCCCCcEEEEEeccCC
Confidence 35788 56699984 44566666677999999998887766653321 1123457788888764
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-
Q 008058 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF- 155 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~- 155 (579)
.. ++.++++|+.+|.|++||+.+++.+..+ .+|...|++++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 82 ~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 82 NT-----SHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp TT-----CCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CC-----CCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 21 1568999999999999999999988666 57999999999999 9999999999999999999999998888
Q ss_pred --ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee----------------------------cCCCCEE
Q 008058 156 --RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVR 203 (579)
Q Consensus 156 --~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~----------------------------~h~~~v~ 203 (579)
..|...|.+++|+|+++++++++ |.|++||+++++.+..+. +|...|.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 67899999999999999999997 899999999876544333 3999999
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccc---------cceeEEeeecCceeeEeEEecCCcccCC--CcEEEEEEc
Q 008058 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISE 272 (579)
Q Consensus 204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~ 272 (579)
+++|+ ++++++++ .|+.|++||+...... ....+..+..+...+..+.|+ |+ +.+|++++.
T Consensus 236 ~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~ 307 (366)
T 3k26_A 236 CVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQ 307 (366)
T ss_dssp EEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECT
T ss_pred EEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEec
Confidence 99999 67888887 7999999999876531 012334444555556667776 77 999999999
Q ss_pred CCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC--CC
Q 008058 273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SG 350 (579)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~ 350 (579)
||.|++||+.+++..... ...+.+| ..
T Consensus 308 dg~i~vwd~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~ 336 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAK---------------------------------------------------CTTLTHHKCGA 336 (366)
T ss_dssp TSCEEEEECCSSSGGGCE---------------------------------------------------EEEECCTTCCS
T ss_pred CCcEEEEECCCCCCcccc---------------------------------------------------ceEEcccccCC
Confidence 999999998776432110 0123344 67
Q ss_pred CcEEEeecCCcceeeccccceecccceeee
Q 008058 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.|.+++|+|||++| ++++.|+.+++|++.
T Consensus 337 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 337 AIRQTSFSRDSSIL-IAVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred ceEEEEeCCCCCeE-EEEeCCCEEEEEEec
Confidence 89999999999999 999999999999973
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-34 Score=333.10 Aligned_cols=338 Identities=18% Similarity=0.226 Sum_probs=266.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|...+..+.|+++ .
T Consensus 656 h~~~v--~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------~---- 711 (1249)
T 3sfz_A 656 HEDEV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK------------------S---- 711 (1249)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------S----
T ss_pred CCCCE--EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC------------------C----
Confidence 35678 66699999999999999999999999999999998877665554444432 1
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----- 156 (579)
+..++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+++++++++.||+|++||+.+++....+.
T Consensus 712 ---~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 712 ---NHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp ---SCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred ---CceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 1568999999999999999999988666 5799999999999999999999999999999987765443321
Q ss_pred --------------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008058 157 --------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTF 184 (579)
Q Consensus 157 --------------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--g~i~vw 184 (579)
+|...|.+++|+|+++++++++ |.|++|
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5667899999999999999998 899999
Q ss_pred ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce--------------------------
Q 008058 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-------------------------- 238 (579)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~-------------------------- 238 (579)
|+.+++.+..+.+|...|.+++|+|+++++++++ .|+.|++|++.........
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 9999999999999999999999999999999998 7999999997642111000
Q ss_pred eEE------eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058 239 CVL------AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 239 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
... ........+.+++++ |++.++++|+.||.|++||+.+++.+.....+...+.+.. ++++++
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~---- 1016 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGK---- 1016 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSS----
T ss_pred EEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCC----
Confidence 000 000122346677787 9999999999999999999999887766555544443333 566666
Q ss_pred hhhhccccceecCCc---------------------------------eEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058 313 AIFAAKLQDIVKPAS---------------------------------VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 313 ~i~~~~~~~~~~~~~---------------------------------~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
.+++++.|+.++.++ +.+.+ +..........+.+|...|.+++|+|
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v-wd~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKV-WNVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEE-EETTTTCCCEEEECCSSCCCCEEECS
T ss_pred EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEE-EECCCCceeEEEcccCCcEEEEEECC
Confidence 777887777665443 11111 11122345567788999999999999
Q ss_pred Ccceeeccccceecccceeee
Q 008058 360 DGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~~~ 380 (579)
||.++ ++++.|+++++|++.
T Consensus 1096 d~~~l-~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1096 DATKF-SSTSADKTAKIWSFD 1115 (1249)
T ss_dssp SSSSC-EEECCSSCCCEECSS
T ss_pred CCCEE-EEEcCCCcEEEEECC
Confidence 99999 999999999999985
No 40
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=307.25 Aligned_cols=309 Identities=12% Similarity=0.000 Sum_probs=213.6
Q ss_pred EEeCCCcEEEEECCCCeEE----EEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058 22 ICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (579)
Q Consensus 22 s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (579)
+++.|++|+|||+.++++. ..+..|. ..+..++|.|.... ..++.+|++++.||.
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~------------------~~V~~v~wsp~~~~---~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSF------------------GEVWDLKWHEGCHA---PHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECC------------------CSEEEEEECSSCCC---SSSSCEEEEEETTSC
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecC------------------CcEEEEEECCCCCC---CCCCceEEEEecCCe
Confidence 3557889999999877642 2222222 23556677664100 001578999999999
Q ss_pred EEEEEccCCeEE----------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEE-
Q 008058 98 VLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCM- 165 (579)
Q Consensus 98 i~iwd~~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l- 165 (579)
|++||+.++... .....+|...|++++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999999876421 01236799999999999864 89999999999999998774 456688999999999
Q ss_pred -EEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 166 -AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 166 -~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
+|+|+| .+|++|+ ++|++||+++++++.++.+|.. .|.+++|+|+++.+++++ .|++|++||++.+...
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~---- 390 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV---- 390 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC----
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc----
Confidence 578888 8999988 9999999999888878877764 588999999999988887 7999999999987643
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce-----EEeeecccCcccccccchhh
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i 314 (579)
..+..+...+..++|+ |+|.+|++|+.||+|++||.... .+..++... ..+.... ++++++ .+
T Consensus 391 -~~l~gH~~~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~-~sp~g~----~~ 458 (524)
T 2j04_B 391 -HPLVSRETTITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWD-YSIKDD----KY 458 (524)
T ss_dssp -EEEEECSSCEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECB-CCSSSC----EE
T ss_pred -eeeecCCCceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEec-cCCCCC----eE
Confidence 3344456667788888 99999999999999999998654 333222111 0111221 455543 11
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc---eeeccccceecccceeee
Q 008058 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~~~~w~~~ 380 (579)
. . .+..+.+. +. .......++.+|...|.+++|+|++. ++ ++|+.|+++|+|++.
T Consensus 459 ~-~--~~~~~~~~---~~----~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l~ 516 (524)
T 2j04_B 459 R-I--DSSYEVYP---LT----VNDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYLS 516 (524)
T ss_dssp E-E--CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEECS
T ss_pred E-c--cCCceecc---cc----cCCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEcc
Confidence 1 1 11111100 00 01234456778999999999999964 88 999999999999984
No 41
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=286.25 Aligned_cols=308 Identities=12% Similarity=0.114 Sum_probs=233.2
Q ss_pred CCcccceEEEEccCCCEE-EEEeC---CCcEEEEECCCCeEEEEec-cccccccccccccccccccccCccceEEeeecc
Q 008058 3 SSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~l-as~s~---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
..+| .+++|+|++..+ ++|+. ||.|+|||+.+++...... .|. ..+.++.|.+..
T Consensus 18 ~~~v--~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~ 77 (357)
T 3i2n_A 18 NYTV--FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA------------------KPIKCGTFGATS 77 (357)
T ss_dssp SSCE--EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES------------------SCEEEEECTTCC
T ss_pred CCce--EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc------------------CcEEEEEEcCCC
Confidence 4678 566999999655 56655 8999999999888654432 232 345566666643
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCCCCEEEEEE------ccCCCEEEEEeCCCcEEEEeCCCCc
Q 008058 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~------~~~~~~l~s~~~dg~v~iwd~~~~~ 150 (579)
++ +.++++|+.+|.|++||+.+++ .+..+ .+|...|.++.| +|++++|++++.||.|++||+.+++
T Consensus 78 ~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 78 LQ------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp TT------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred CC------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 22 5789999999999999999987 55444 689999999954 6899999999999999999999887
Q ss_pred -eeeEeecCCC----CeeEEE----EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec---CCCEEEE
Q 008058 151 -LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVLS 216 (579)
Q Consensus 151 -~~~~~~~~~~----~v~~l~----~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s 216 (579)
.+..+..|.+ .+.+++ |+|+++++++++ |.|++||+++++.... ..|...|.+++|+| ++.++++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence 6777766554 889998 788999999987 8999999999987544 56899999999999 8999999
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
++ .|+.|++||++.++............+...+..+.|+ |++. +|++++.||.|++||++++.......
T Consensus 230 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 299 (357)
T 3i2n_A 230 TS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD---- 299 (357)
T ss_dssp EE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC----
T ss_pred EC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc----
Confidence 87 7999999999887654221222333556667778887 8888 89999999999999987665432111
Q ss_pred EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008058 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (579)
..+. .. ...+ .......+.+|...|.+++|+|+|.++++|++.|+.++
T Consensus 300 ---------~~g~----~~----------~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 300 ---------SEGI----EM----------GVAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ---------TTSC----CC----------CCCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred ---------CCCC----cc----------cccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 1111 00 0001 11234467789999999999999999933899999999
Q ss_pred ceeee
Q 008058 376 GRYVQ 380 (579)
Q Consensus 376 ~w~~~ 380 (579)
+|++.
T Consensus 348 iw~~~ 352 (357)
T 3i2n_A 348 VLIVT 352 (357)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99985
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-33 Score=285.78 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=235.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccccccccccccccccccccccCccceEEeee
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
+.++| .+++|+| ++|++|+.||+|+|||+.+++ ....+..|.. .+.++.|.+
T Consensus 15 h~~~i--~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~ 72 (397)
T 1sq9_A 15 HDADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------------------GLHHVDVLQ 72 (397)
T ss_dssp SSSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT------------------CEEEEEEEE
T ss_pred hhcCe--EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC------------------cEEEEEEec
Confidence 45788 5669998 799999999999999999887 5555554433 455677766
Q ss_pred cccccccccCC---cEEEEEECCCeEEEEEccCCeE-----EEEecCCC-----CCCEEEEEEc----cCCCE-EEEEeC
Q 008058 76 VDRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGA 137 (579)
Q Consensus 76 ~~~~~~~~~~~---~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~~~ 137 (579)
.... ++ .+|++++.+|.|++||+.+++. ...+ ..| ...|.+++|+ |++++ |++++.
T Consensus 73 ~~~~-----~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 73 AIER-----DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp EEET-----TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred cccc-----CCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 4100 14 6899999999999999998875 5444 567 5899999999 99999 999999
Q ss_pred CCcEEEEeCCC------Cceee-----Eee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008058 138 DGMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 138 dg~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~ 197 (579)
||.|++||+.+ ++.+. .+. .|...|.+++|+|++ ++++++ |.|++||+++++.+..+..
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999988 66666 774 378899999999999 999988 8999999999999999998
Q ss_pred ---C---CCCEEEEEEecCCCEEEEEecCC---CeEEEEEcCCCccccceeEEeeec-------------CceeeEeEEe
Q 008058 198 ---H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCI 255 (579)
Q Consensus 198 ---h---~~~v~~l~~~~~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 255 (579)
| ...|.+++|+|++++|++++ .| +.|++||+++++.. ..+.. +...+..+.|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEE
T ss_pred cccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEE
Confidence 9 99999999999999999988 68 99999999987633 34443 5566778888
Q ss_pred cCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeC
Q 008058 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG 335 (579)
Q Consensus 256 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g 335 (579)
+ |++.+|++++.||.|++||+.+++.+....... ...... .. .. .|
T Consensus 300 ~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~----~~--------------~g 345 (397)
T 1sq9_A 300 N-----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHC---------DDIEIE--ED----IL--------------AV 345 (397)
T ss_dssp C-----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCG---------GGCSSG--GG----CC--------------CB
T ss_pred C-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc---------Ccccch--hh----hh--------------cc
Confidence 7 999999999999999999999887665443100 000000 00 00 00
Q ss_pred CCCCceeEEEecCCCCcEEEeecCCc----------ceeeccccceecccceeee
Q 008058 336 LLLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~~s~s~d~~~~~w~~~ 380 (579)
.. ....+|...|.+++|+||| .+| ++++.|+.+++|++.
T Consensus 346 ~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 346 DE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREA 394 (397)
T ss_dssp CT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEE
T ss_pred cc-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcC
Confidence 00 0123578899999999999 688 999999999999985
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-33 Score=274.34 Aligned_cols=247 Identities=16% Similarity=0.206 Sum_probs=196.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC--CeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+..+| .+++|+|+|++||+|+.|++|+|||+.+ ++++..+.+|...+.. ++|.++.
T Consensus 8 h~~~V--~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~------------------v~~s~~~-- 65 (297)
T 2pm7_B 8 HNEMI--HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR------------------VDWAHPK-- 65 (297)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEE------------------EEECCGG--
T ss_pred CcCce--EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEE------------------EEecCCC--
Confidence 45678 4559999999999999999999999974 3566777766655554 4443321
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~ 153 (579)
.+.+|++|+.||.|++||+.+++ .+.. ..+|...|.+++|+|+ |.+|++++.|++|++||++++. ...
T Consensus 66 -----~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 66 -----FGTILASCSYDGKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp -----GCSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred -----cCCEEEEEcCCCEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 16789999999999999999874 3323 3579999999999997 8899999999999999998763 245
Q ss_pred EeecCCCCeeEEEEccC-------------CCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCC---
Q 008058 154 KFRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG--- 211 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~-------------g~~l~~~~--g~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~--- 211 (579)
.+.+|...|.+++|+|+ +++|++|+ +.|++||+++++ ...++.+|...|.+++|+|++
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 67889999999999997 56899887 899999998765 567889999999999999985
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
.+|++++ .|++|++||++...............+...+..+.|+ |+|++|++++.||.|++|+..
T Consensus 220 ~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence 7888887 7999999999875321100111112334556677887 999999999999999999865
No 44
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=313.68 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=167.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++||+|+.||+|+||+..+++....+. | ...+.+++|.+
T Consensus 17 ~~~V--~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~------------------~~~V~~l~fsp------- 68 (902)
T 2oaj_A 17 SSKP--IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-D------------------RSAIKEMRFVK------- 68 (902)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-S------------------CCCEEEEEEET-------
T ss_pred CCCc--EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-C------------------CCCEEEEEEcC-------
Confidence 4678 566999999999999999999999998877655432 2 23456677766
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----------
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------- 152 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------- 152 (579)
+.+|++++.|+.|++||+.+++++..+. |.+.|++++|+|+++++++|+.||+|++||+.+++..
T Consensus 69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 3479999999999999999999887763 6789999999999999999999999999999988753
Q ss_pred -eEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------------------CCCEEEEEEecC
Q 008058 153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN 210 (579)
Q Consensus 153 -~~~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~ 210 (579)
..+.+|.++|.+++|+|+ +..+++|+ |.| +||+++++.+..+.+| ...|.+++|+|+
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 234668889999999996 46788887 899 9999999998888766 577999999999
Q ss_pred CCEEEEEecCCCeEEEEEcCCCcc
Q 008058 211 GKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
|++|++++ .|++|++||+++++.
T Consensus 223 g~~lasgs-~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 223 SLHIITIH-EDNSLVFWDANSGHM 245 (902)
T ss_dssp SSEEEEEE-TTCCEEEEETTTCCE
T ss_pred CCEEEEEE-CCCeEEEEECCCCcE
Confidence 99999998 799999999987653
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.8e-33 Score=280.30 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=203.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|+|||++||+|+.||+|+|||+.+++....+.+|...+..+.|+++ +..
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~---------------------------~~~ 179 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---------------------------GDK 179 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC---------------------------CCE
Confidence 45699999999999999999999999999999888877766665555554 788
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-------ecCCC
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTK 160 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~ 160 (579)
|++|+.|+.|++||+.++++...+ .+...+.+++|+| ++++|++|+.||.|++||+.+++.+..+ .+|..
T Consensus 180 l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 180 LVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257 (393)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred EEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence 999999999999999999987665 3667899999999 8999999999999999999999887776 56888
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCC------------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
.|.+++|+|+|++|++|+ +.|++||+++. .+...+.+|...|.+++|+|++++|++++ .|+.|++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~i 336 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLF 336 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEE
Confidence 999999999999999998 89999999753 34567889999999999999999999988 7999999
Q ss_pred EEcCCCccccceeEEeeecCceeeEeEEecC-CcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDN-GGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
||+.+++. +..+..+...+..+.+++ ..++|++.+|++|+.||+|++|+++..
T Consensus 337 wd~~~~~~-----~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 337 WDKKSGNP-----LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EETTTCCE-----EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EECCCCeE-----EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99998763 344555555556666653 234568999999999999999997543
No 46
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=292.00 Aligned_cols=257 Identities=12% Similarity=0.170 Sum_probs=196.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccccccccccccccccccccccCccceE
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++| .+++|+|+|++||+|+.||.|+|||+.++. ....+.+|....... ........++++
T Consensus 28 ~~~V--~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~V~~l 99 (447)
T 3dw8_B 28 ADII--STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYL------KSLEIEEKINKI 99 (447)
T ss_dssp GGSE--EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGG------GTEEECCCCCEE
T ss_pred cCcE--EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccc------ccccccCceEEE
Confidence 3678 566999999999999999999999998876 466666554211000 000012456777
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE---------------------------------------EEe
Q 008058 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL 112 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~---------------------------------------~~~ 112 (579)
+|.+... ...+++++.||.|++||+.++... ..+
T Consensus 100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 8877521 268999999999999999875542 133
Q ss_pred cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cceee-------EeecCCCCeeEEEEccCC-CEEEEEC--CeE
Q 008058 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLG-------KFRASTKGISCMAVSSDG-KMLATAA--GQL 181 (579)
Q Consensus 113 ~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~p~g-~~l~~~~--g~i 181 (579)
..+|...|++++|+|++++|++| .|+.|++||+.+ ++.+. .+.+|...|++++|+|++ +++++|+ |.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 46899999999999999999998 899999999984 44444 256788999999999998 8999988 899
Q ss_pred EEEECCCCee----eEEeecCCC------------CEEEEEEecCCCEEEEEecCCCeEEEEEcCC-CccccceeEEeee
Q 008058 182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME 244 (579)
Q Consensus 182 ~vwd~~~~~~----~~~~~~h~~------------~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~ 244 (579)
++||+++++. +..+.+|.. .|.+++|+|++++|++++ . +.|++||++. ++.. ..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence 9999999887 788888876 899999999999999887 5 9999999987 4432 2233
Q ss_pred cCceee---------------EeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
.+.... ..++|+ |++.+|++++.||.|++||+.+++.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence 232211 126676 99999999999999999999988765
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-33 Score=299.49 Aligned_cols=330 Identities=11% Similarity=0.045 Sum_probs=253.8
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.++| .+++|+|+++ ++++++.||.|++||..+++....+..|.. ....+.+++|.+.+
T Consensus 160 ~~~v--~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~---- 218 (615)
T 1pgu_A 160 SQRI--NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK---------------QGSFVRDVEFSPDS---- 218 (615)
T ss_dssp SSCE--EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC---------------TTCCEEEEEECSTT----
T ss_pred CccE--EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC---------------CCceEEEEEECCCC----
Confidence 4567 5569999998 899999999999999999999888875543 01134566666542
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
+.++++++.+|.|++||+.+++.+..+.. +|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+
T Consensus 219 ----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 219 ----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 57899999999999999999998877745 799999999999 9999999999999999999999999988876
Q ss_pred C----CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC----------------------
Q 008058 159 T----KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------------- 210 (579)
Q Consensus 159 ~----~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---------------------- 210 (579)
. ..+.++.|+ +++++++++ |.|++||+.+++.+..+.+|...|.+++| |+
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence 3 578888886 788888887 89999999998888888877777766666 44
Q ss_pred -----------CCEEEEEecCCCeEEEEEcCCCcc---------------------------------------------
Q 008058 211 -----------GKYVLSSAVGERYIALWRTDGVKK--------------------------------------------- 234 (579)
Q Consensus 211 -----------~~~l~s~s~~d~~i~vwd~~~~~~--------------------------------------------- 234 (579)
+..+++++ .|+.+++|++..++.
T Consensus 372 ~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred cCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 45555555 466666665542110
Q ss_pred ---------------ccce---------eE-EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 235 ---------------QSAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 235 ---------------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
.... .. ..+..+...+..+.|+ |++++|++++.||.|++||+.+++.+..
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 0000 00 2223344556777787 9999999999999999999999998877
Q ss_pred cCC-ceEEeeecccCcc----------cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008058 290 TKA-TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 290 ~~~-~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
... +...+.+.. |++ +++ .+++++.|+.++.++. .........+.+|...|.+++|+
T Consensus 526 ~~~~h~~~v~~~~-~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~-------~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 526 RWAFRTSKINAIS-WKPAEKGANEEEIEED----LVATGSLDTNIFIYSV-------KRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp CSCCCSSCEEEEE-ECCCC------CCSCC----EEEEEETTSCEEEEES-------SCTTCCEEETTSSTTCEEEEEEE
T ss_pred eecCCCCceeEEE-EcCccccccccccCCC----EEEEEcCCCcEEEEEC-------CCCceechhhhcCccceEEEEEc
Confidence 654 433333333 566 666 8999999886666441 11124566778999999999999
Q ss_pred CCcceeeccccceecccceeee
Q 008058 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
|||. | ++++.|+++++|++.
T Consensus 594 ~~~~-l-~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 594 TPST-L-VSSGADACIKRWNVV 613 (615)
T ss_dssp ETTE-E-EEEETTSCEEEEEEC
T ss_pred CCCC-e-EEecCCceEEEEeee
Confidence 9999 8 999999999999984
No 48
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-32 Score=269.57 Aligned_cols=240 Identities=19% Similarity=0.225 Sum_probs=202.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|+|++|++|+.|++|+|||+.++++...+.+|...+..+.|+++
T Consensus 65 ~~~v--~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~------------------------ 118 (319)
T 3frx_A 65 SHIV--QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK------------------------ 118 (319)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC------------------------
Confidence 4677 55699999999999999999999999999999999888776666555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC------CCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
+.++++|+.|+.|++||+... .+..+ .+|...|.++.|+|. +..+++++.|++|++||+.+++....+.
T Consensus 119 ---~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 119 ---ASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp ---SCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---CCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence 788999999999999999754 44444 579999999999985 4489999999999999999999999999
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
+|...|.+++|+|+|++|++++ |.|++||+.+++.+.++.. ...|.+++|+|++.++++++ ++.+++|++.....
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYL 270 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCee
Confidence 9999999999999999999998 8999999999999998875 46899999999999988775 56699999987542
Q ss_pred ccceeEEe------eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 235 QSASCVLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 235 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
.. ... ...+...+..++|+ |+|++|++|+.||.|++||+.++
T Consensus 271 ~~---~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 VD---DLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EE---EECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred ee---ccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence 21 010 01123345567887 99999999999999999998764
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-32 Score=278.88 Aligned_cols=276 Identities=15% Similarity=0.183 Sum_probs=227.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|++ +.+++++.||.|++||..+++....+... ....+++++|.+. +.+
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~---------~~~ 148 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHD---------GSF 148 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTT---------SSE
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCC---------CCE
Confidence 4446654 56888889999999999999987766531 1234556666653 788
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~ 167 (579)
|++|+.+|.|++||+.+++.+..+ .+|...|.+++| +++++++++.||.|++||++ .+..+..+.+|...|.+++|
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 225 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence 999999999999999999988766 589999999999 56799999999999999998 56778889999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEee
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
+|+++++++|+ |.|++||+++++.+..+.+|...|.+++|+|++..++++++ .|+.|++||+.+++.. ..+
T Consensus 226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~~ 300 (401)
T 4aez_A 226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NTV 300 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EEE
T ss_pred cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EEE
Confidence 99999999998 89999999999999999999999999999998766655543 5999999999987633 344
Q ss_pred ecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058 244 EHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
.++ ..+..+.|+ |++.++++++ .||.|++||+.+++....
T Consensus 301 ~~~-~~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~-------------------------------- 342 (401)
T 4aez_A 301 DAG-SQVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ-------------------------------- 342 (401)
T ss_dssp ECS-SCEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEEE--------------------------------
T ss_pred eCC-CcEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCccceeE--------------------------------
Confidence 444 346677787 9999999954 899999999765432110
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus 343 ---------------------~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 343 ---------------------VDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVY 379 (401)
T ss_dssp ---------------------EEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECC
T ss_pred ---------------------EEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECC
Confidence 0234688899999999999999 999999999999984
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-32 Score=279.56 Aligned_cols=273 Identities=15% Similarity=0.243 Sum_probs=221.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++||++ +.||+|. |++|+|||..+|++...++.+. | ...+++++|.+. +.+|+
T Consensus 111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~---------------~-~~~V~sv~fspd---------g~~la 163 (420)
T 4gga_A 111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQ---------------P-GEYISSVAWIKE---------GNYLA 163 (420)
T ss_dssp EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCS---------------T-TCCEEEEEECTT---------SSEEE
T ss_pred EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecC---------------C-CCcEEEEEECCC---------CCEEE
Confidence 599976 5788776 9999999999999887765321 1 224556666553 88999
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p 169 (579)
+|+.||.|++||+.+++.+..+ .+|...+.++.+ ++..+++|+.|+.+++||.... ..+.++.+|...+..+.++|
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 9999999999999999998766 689999999887 5679999999999999998764 55677899999999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCCCEE-EEE-ecCCCeEEEEEcCCCccccceeEE
Q 008058 170 DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKYV-LSS-AVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 170 ~g~~l~~~~--g~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l-~s~-s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+|+++++++ +.+++|+..+++ .+.....|...|.+++|+|++..+ +++ ++.|++|++||+.+++.. .
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-----~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----E
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----e
Confidence 999999998 899999998764 356778899999999999976544 443 347999999999988633 4
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
.+..+...... .|. |++..+++++ .||.|+|||+.+++.+.
T Consensus 316 ~~~~~~~v~~~-~~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~------------------------------- 358 (420)
T 4gga_A 316 AVDAHSQVCSI-LWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------- 358 (420)
T ss_dssp EEECSSCEEEE-EEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred eeccccceeee-eec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE-------------------------------
Confidence 45555555544 454 7888888775 69999999987654321
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
++.+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus 359 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 359 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 394 (420)
T ss_dssp ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 345788999999999999999 999999999999983
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-32 Score=283.99 Aligned_cols=306 Identities=12% Similarity=0.179 Sum_probs=236.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
++++++++|++|+.||+|++||+.+++....+.+|...+..+.|+++ + .+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---------------------------~-~l~s 178 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---------------------------G-ILVS 178 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST---------------------------T-EEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC---------------------------C-EEEE
Confidence 44557889999999999999999999999999877766655444433 3 7999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCCCce------------------
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLTGSL------------------ 151 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~dg~v~iwd~~~~~~------------------ 151 (579)
|+.||.|++||+.+++.+..+ .+|.+.|.+++|+ ++++++++++.||+|++||+.++..
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999988666 6799999999998 5778999999999999999987652
Q ss_pred -----eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 152 -----~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
+..+.+|...+.++ +++++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i 334 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI 334 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence 45677788888776 57788999988 8999999999999999999999999999999999999988 79999
Q ss_pred EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc-eEEeeecccC
Q 008058 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT-KILSSSEDVN 303 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 303 (579)
++||+++++ ++..+..+...+..+.++ +.+|++++.||.|++||+.++......... ..... .+
T Consensus 335 ~vwd~~~~~-----~~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~ 399 (464)
T 3v7d_B 335 RIWDLENGE-----LMYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT---TF 399 (464)
T ss_dssp EEEETTTTE-----EEEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEE---EE
T ss_pred EEEECCCCc-----EEEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEE---EE
Confidence 999999876 345566666667777774 589999999999999999987655432211 11111 13
Q ss_pred cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE-EecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK-ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+++++ .+++++ ++.++.++ ......... +..|...|.+++|+ +..+.++++.|+.+.+|-+
T Consensus 400 ~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 400 YVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred EeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 45555 666666 66555543 122222222 45688889999997 4444266676776665543
No 52
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-33 Score=309.13 Aligned_cols=339 Identities=10% Similarity=0.028 Sum_probs=238.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+| |++|++++.|++|+|||+.+++++..+. +...+ ++++|.+.
T Consensus 58 ~~~V--~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V------------------~~v~~sp~------ 109 (902)
T 2oaj_A 58 RSAI--KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKI------------------TSIDTDAS------ 109 (902)
T ss_dssp CCCE--EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCE------------------EEEECCTT------
T ss_pred CCCE--EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCE------------------EEEEECCC------
Confidence 3578 5559999 8899999999999999999999888775 33333 44444432
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEE----------EecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCce
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~----------~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 151 (579)
+.++++|+.||.|++||+.+++... ....+|.++|++++|+|+ +..+++|+.||.| +||+++++.
T Consensus 110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI 185 (902)
T ss_dssp ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence 7889999999999999999987631 123679999999999996 4689999999999 999999998
Q ss_pred eeEeecC------------------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE--e---ec---------
Q 008058 152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG--------- 197 (579)
Q Consensus 152 ~~~~~~~------------------~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~--~---~~--------- 197 (579)
++.+..| ...|++++|+|+|++|++++ |.|++||+++++++.. + .+
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 8888765 46799999999999999998 8999999999887653 2 12
Q ss_pred ----CCCCEEEEEEec----CC-CEEEEEecCC-----CeEEEEEcCC------------------Cccc----------
Q 008058 198 ----HPGAVRFMTFSD----NG-KYVLSSAVGE-----RYIALWRTDG------------------VKKQ---------- 235 (579)
Q Consensus 198 ----h~~~v~~l~~~~----~~-~~l~s~s~~d-----~~i~vwd~~~------------------~~~~---------- 235 (579)
|..+|.+++|++ ++ ..+++++ .| +.+.+|++.. .+..
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHK-SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEE-CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCC-CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 345799999964 43 3455554 34 2677777310 0000
Q ss_pred -----------------------------cceeEEee----------------ecCceeeEeEEec--------------
Q 008058 236 -----------------------------SASCVLAM----------------EHPAVFMDCRCID-------------- 256 (579)
Q Consensus 236 -----------------------------~~~~~~~~----------------~~~~~~~~~~~~~-------------- 256 (579)
....++.+ ..+...+.++.++
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 00000000 0000111222221
Q ss_pred ---------------CCcccCCCcEEEEEEcCCeEEEEECCCceeecc--c---------CCceEEeeecccCccccccc
Q 008058 257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--T---------KATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 257 ---------------~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~ 310 (579)
...++|++++|++|+.||+|++||+.++..... . ..+...+.+.. |+|+++
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva-fspdg~-- 501 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS-FAAETL-- 501 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE-EETTTT--
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE-ecCCCC--
Confidence 012348899999999999999999988742110 0 01222233333 788888
Q ss_pred chhhhhccccceecCCceEEEEEeCC-------C---------C---------------------CceeEEEecCCCCcE
Q 008058 311 TAAIFAAKLQDIVKPASVHTFVAYGL-------L---------L---------------------KPSFQKILVNSGEDI 353 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~-------~---------~---------------------~~~~~~~~~h~~~v~ 353 (579)
.+++|+.|+.+++|+..-...++. . + ..+...+.+|.+.|+
T Consensus 502 --~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~ 579 (902)
T 2oaj_A 502 --ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS 579 (902)
T ss_dssp --EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred --eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence 899999999888776432100000 0 0 123567778999999
Q ss_pred EEeecCCcceeeccccceecccceeeee
Q 008058 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
+++||||| +| ++|+.|+++++|++..
T Consensus 580 svafSpdG-~l-Asgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 580 AINNSNIG-FV-GIAYAAGSLMLIDRRG 605 (902)
T ss_dssp EEEECBTS-EE-EEEETTSEEEEEETTT
T ss_pred EEEecCCc-EE-EEEeCCCcEEEEECCC
Confidence 99999999 99 9999999999999853
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=290.99 Aligned_cols=314 Identities=13% Similarity=0.138 Sum_probs=223.6
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC---CeE---EEEeccccccccccccccccccccccCccceEEeee
Q 008058 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQV---QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
+++| .+++|+| +|++||+|+.||+|+|||+.+ +.. ...+ .| ...+.+++|.+
T Consensus 63 ~~~V--~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h------------------~~~v~~~~~~~ 121 (437)
T 3gre_A 63 PNSI--TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC------------------SSTVTQITMIP 121 (437)
T ss_dssp TSCE--EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-EC------------------SSCEEEEEECT
T ss_pred CCce--EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cC------------------CCCEEEEEEeC
Confidence 5788 5569999 999999999999999999876 321 1111 12 33566777765
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEcc---CCeEEEEe--------c-CC--CCCCEEEEE--EccCCCEEEEEeCCC
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGADG 139 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~---~~~~~~~~--------~-~~--h~~~V~~l~--~~~~~~~l~s~~~dg 139 (579)
. +..|++|+.||.|++||+. +++..... . .. +...+.++. +++++.++++++.||
T Consensus 122 ~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 122 N---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp T---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred C---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 3 7889999999999999995 44333211 1 11 556777777 568899999999999
Q ss_pred cEEEEeCCCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe----cC
Q 008058 140 MVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS----DN 210 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~----~~ 210 (579)
.|++||+++++.+..+.. |...|++++|+|++++|++|+ |.|++||+++++++.++. +|..+|.+++|+ |+
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 999999999999999988 788999999999999999998 899999999999999886 788899999665 46
Q ss_pred CCEEEEEecCCCeEEEEEcCCCccccceeEEeeec--------------------------CceeeEeEEecCCcccCCC
Q 008058 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--------------------------PAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 264 (579)
+.++++++ .|+.|++||+++++.. ..+.. +...+.+++|+ ++
T Consensus 273 ~~~l~s~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~~ 340 (437)
T 3gre_A 273 SVIVVGGS-SKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------ND 340 (437)
T ss_dssp EEEEEEES-TTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------TT
T ss_pred ccEEEEEc-CCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------Cc
Confidence 77888887 7999999999987633 11111 33345556664 56
Q ss_pred cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEe-CCCCCceeE
Q 008058 265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSFQ 343 (579)
Q Consensus 265 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 343 (579)
.+|++++.||.|++||+.+++.+............ +.+. .. .......... .........
T Consensus 341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~ 401 (437)
T 3gre_A 341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIPT-----------QV-----TANLTMLLRKMKRTSTHSVD 401 (437)
T ss_dssp EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEEE-----------EE-----ETTEEEEEEECC--------
T ss_pred eEEEecCCCCeEEEEECCCcccceEEecccccCce---EEEE-----------Ee-----ecceEEEEEecccccccccC
Confidence 89999999999999999998876554432110000 0000 00 0011111111 011111123
Q ss_pred EEecCCCCcEEEeecCC--cceeeccccceeccccee
Q 008058 344 KILVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 344 ~~~~h~~~v~~~~~s~d--g~~l~~s~s~d~~~~~w~ 378 (579)
....|...|.+++|+++ +.+| +|++.|+.|++|+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence 44569999999999998 7788 9999999999995
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-32 Score=272.97 Aligned_cols=236 Identities=14% Similarity=0.194 Sum_probs=199.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccccccccccccccccccccccCccceEEeeecc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
..| .+++|+|+|.+||+|+.|+.+++|++.... ....+..|.. .+.++.|.+.
T Consensus 107 ~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~- 165 (354)
T 2pbi_B 107 TWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN------------------YLSACSFTNS- 165 (354)
T ss_dssp SCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS------------------CEEEEEECSS-
T ss_pred CCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC------------------cEEEEEEeCC-
Confidence 456 566999999999999999999999986432 1222222322 3445666553
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (579)
+..+++++.||.|++||+.+++.+..+ .+|...|.+++|+| +|++|++|+.||+|++||+++++++..+
T Consensus 166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 678999999999999999999988666 57999999999988 5789999999999999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.+|...|++++|+|++++|++|+ +.|++||+++++.+..+..+ ...+.+++|+|+++++++++ .|+.|++||+.+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~ 315 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK 315 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence 99999999999999999999998 89999999999887777543 35789999999999999988 799999999988
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd 280 (579)
++. +..+..+...+.++.|+ |+|.+|++|+.||+|++|+
T Consensus 316 ~~~-----~~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSR-----VSILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred Cce-----EEEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence 763 34455666778888898 9999999999999999995
No 55
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-33 Score=289.84 Aligned_cols=281 Identities=14% Similarity=0.083 Sum_probs=206.4
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEE--EeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
..| .|++|+| ++++||+|+.||+|+|||+.++.... .+.+|.. .+++++|.|.+
T Consensus 120 ~~V--~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~------------------~V~~l~f~p~~--- 176 (435)
T 4e54_B 120 RRA--TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG------------------SITGLKFNPLN--- 176 (435)
T ss_dssp SCE--EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC------------------CCCEEEECSSC---
T ss_pred CCE--EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC------------------CEEEEEEeCCC---
Confidence 347 5669999 56799999999999999998775433 3334443 45566666543
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
+.+|++|+.||.|++||+.++...... ...+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|.
T Consensus 177 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~ 250 (435)
T 4e54_B 177 -----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK 250 (435)
T ss_dssp -----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred -----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence 778999999999999999877653222 12344567899999999999999999999999985 56778889999
Q ss_pred CCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE---eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 160 ~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
..|++++|+|+++ ++++|+ +.|++||+++.+.... ..+|..+|++++|+|+|++|++++ .|+.|++||+.++.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence 9999999999987 666776 8999999988765433 367999999999999999999998 79999999999876
Q ss_pred cccceeEEeeecC------ceeeEeEEecCCcccCCCcEEEEEEc------------CCeEEEEECCCceeecccCCceE
Q 008058 234 KQSASCVLAMEHP------AVFMDCRCIDNGGVDDAGLYVLAISE------------TGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 234 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
... ....+. ...+. ..+. |++..++++.. ++.|++||..+++.+...
T Consensus 330 ~~~----~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l----- 394 (435)
T 4e54_B 330 CPL----GLIPHPHRHFQHLTPIK-AAWH-----PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL----- 394 (435)
T ss_dssp SEE----EECCCCCCCCSSSCCCB-CEEC-----SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-----
T ss_pred cce----EEecccccccccceeEE-EEEc-----CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-----
Confidence 431 111111 11111 2233 55555555532 345666666555432211
Q ss_pred EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeeccccceecc
Q 008058 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLKSK 374 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~~~ 374 (579)
..+|...|.++ +|+|||.+| ++|+ |++|
T Consensus 395 -------------------------------------------------~~~~~~~v~s~~~fspdg~~l-asg~-d~~i 423 (435)
T 4e54_B 395 -------------------------------------------------YDPESSGISSLNEFNPMGDTL-ASAM-GYHI 423 (435)
T ss_dssp -------------------------------------------------CCSSCCCCCCEEEECTTSSCE-EEEC-SSEE
T ss_pred -------------------------------------------------eCCCCCcEEEEEEECCCCCEE-EEEc-CCcE
Confidence 11455567776 699999999 8887 8899
Q ss_pred cceeee
Q 008058 375 RGRYVQ 380 (579)
Q Consensus 375 ~~w~~~ 380 (579)
++|++.
T Consensus 424 ~iW~~~ 429 (435)
T 4e54_B 424 LIWSQQ 429 (435)
T ss_dssp EECCCC
T ss_pred EEEECC
Confidence 999984
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-32 Score=265.21 Aligned_cols=272 Identities=19% Similarity=0.219 Sum_probs=224.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++| |++++|++|+.||.|++||+.++.....+..|...+.. +.|.+.
T Consensus 17 h~~~v--~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~------------------~~~~~~----- 70 (313)
T 3odt_A 17 HDQDV--RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNS------------------VCYDSE----- 70 (313)
T ss_dssp CSSCE--EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEE------------------EEEETT-----
T ss_pred CCCCc--EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEE------------------EEECCC-----
Confidence 45778 55599 99999999999999999999999888888766555544 444442
Q ss_pred cccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
+.++++++.+|.|++|++... +....+ .+|...|.++.| +++++++++.||.|++|| .++....+..|
T Consensus 71 ----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 71 ----KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ----TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred ----CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 788999999999999998764 334344 679999999999 677999999999999999 67888889999
Q ss_pred CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
...+.+++|+| +++++++++ |.|++|| ..+....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDV 217 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhh
Confidence 99999999998 899999888 8999999 5567777777 999999999999998 77777 799999999998763
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
+..+..+...+..+.|+ |++ .|++++.||.|++||+.+++.+.
T Consensus 218 -----~~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~-------------------------- 260 (313)
T 3odt_A 218 -----LRTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ-------------------------- 260 (313)
T ss_dssp -----EEEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE--------------------------
T ss_pred -----hhhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE--------------------------
Confidence 34555566677888887 888 58999999999999987654321
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+..|...+.+++|+|||.+ ++++.|+.+++|++.
T Consensus 261 -----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 261 -----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQE 295 (313)
T ss_dssp -----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESC
T ss_pred -----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCC
Confidence 23356668999999999995 457889999999984
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=278.73 Aligned_cols=300 Identities=12% Similarity=0.066 Sum_probs=228.0
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| +|++|++|+.||.|++||+.++.....+....... ..... ..+| ...+.++.|.+.+
T Consensus 42 h~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~--~~~~-~~~v~~~~~~~~~--- 111 (408)
T 4a11_B 42 HGGGI--NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--IGRDH--PDVH-RYSVETVQWYPHD--- 111 (408)
T ss_dssp CSSCE--EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--ECTTC--TTCC-SSCEEEEEECTTC---
T ss_pred cCCcE--EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--ccccc--cccC-CCcEEEEEEccCC---
Confidence 45788 5669999 99999999999999999998876443322100000 00000 0112 3456778887743
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
+.++++++.+|.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||+.+++.+..+..
T Consensus 112 -----~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 112 -----TGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp -----TTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred -----CcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 6789999999999999999999876663 7788999999984 44999999999999999999999999999
Q ss_pred CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCe-eeEEe---------------ecCCCCEEEEEEecCCCEEEEEe
Q 008058 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~-~~~~~---------------~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
|...|.+++|+|+++ ++++++ |.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999999999998 477776 899999998765 44444 57889999999999999999998
Q ss_pred cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee
Q 008058 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (579)
.|+.|++||+.+++....................... ..+..+++++.||.|++||+.+++.+.
T Consensus 265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~---------- 328 (408)
T 4a11_B 265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT---------- 328 (408)
T ss_dssp -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE----------
T ss_pred -CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee----------
Confidence 7999999999987643110000111111122222222 445677788889999999987654321
Q ss_pred ecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+.+|...|.+++|+|||.+| ++++.|+.+++|+
T Consensus 329 ---------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~ 362 (408)
T 4a11_B 329 ---------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWV 362 (408)
T ss_dssp ---------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred ---------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEe
Confidence 334677889999999999999 9999999999999
Q ss_pred ee
Q 008058 379 VQ 380 (579)
Q Consensus 379 ~~ 380 (579)
+.
T Consensus 363 ~~ 364 (408)
T 4a11_B 363 PS 364 (408)
T ss_dssp EC
T ss_pred CC
Confidence 85
No 58
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=271.48 Aligned_cols=252 Identities=15% Similarity=0.191 Sum_probs=198.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
..+| .+++|+|+|++||+|+.|++|+||+..++. +...+.+|...+..+.|+++
T Consensus 61 ~~~v--~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---------------------- 116 (345)
T 3fm0_A 61 QRTV--RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---------------------- 116 (345)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----------------------
T ss_pred CCcE--EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----------------------
Confidence 4568 555999999999999999999999988764 56677766665555555544
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~ 156 (579)
+.+|++|+.|+.|++||+.++.. ......+|...|.+++|+|++++|++++.|++|++||..+++ +..++.
T Consensus 117 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 117 -----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp -----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred -----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 78999999999999999987642 223446899999999999999999999999999999998775 456788
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---------------eeeEEeec-CCCCEEEEEEecCCCEEEEEe
Q 008058 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~---------------~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s 218 (579)
+|...|.+++|+|+|++|++++ +.|++||.... +++.++.+ |...|.+++|+|++..|++++
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 9999999999999999999998 89999996321 33455555 889999999999999999988
Q ss_pred cCCCeEEEEEcCCCccccc-ee---EEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceeecc
Q 008058 219 VGERYIALWRTDGVKKQSA-SC---VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
.|+.|++|+......... .. ......+...+.++.|+ |++ .+|++++.||+|++|+..+.+.+..
T Consensus 272 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 272 -GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp -TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC------
T ss_pred -CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 799999999876542210 01 11123455677888888 877 5999999999999999988876543
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-32 Score=295.03 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=252.6
Q ss_pred CCc-ccceEEEEcc--CCCEEEEEeCCCcEEEEECCCC--------eEEEEeccccccccccccccccccccccCccceE
Q 008058 3 SSN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~-V~~~~~~fs~--dg~~las~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++ | .+++|+| +|++||+|+.||+|+|||+.++ .....+..|...+..+.|+++
T Consensus 63 ~~~~v--~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------- 127 (615)
T 1pgu_A 63 GSSVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE------------- 127 (615)
T ss_dssp TTSCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-------------
T ss_pred CCceE--EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC-------------
Confidence 455 7 5669999 9999999999999999999755 566666655555554444444
Q ss_pred EeeecccccccccCCcEEEEEECC----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeC
Q 008058 72 KWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDP 146 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~ 146 (579)
+.++++++.+ +.|++|| .++.+..+ .+|...|++++|+|+++ .+++++.|+.|++||+
T Consensus 128 --------------~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 128 --------------GRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp --------------SSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred --------------CCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence 7889999887 6788888 55666555 68999999999999998 7999999999999999
Q ss_pred CCCceeeEeecCCC---CeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEe-e---cCCCCEEEEEEecCCCEEEE
Q 008058 147 LTGSLLGKFRASTK---GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF-S---GHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 147 ~~~~~~~~~~~~~~---~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~-~---~h~~~v~~l~~~~~~~~l~s 216 (579)
.+++.+..+.+|.. .|.+++|+|+ ++++++++ |.|++||+++++.+..+ . +|...|.++.|+ +++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 99999999999999 9999999999 99999887 89999999999999998 6 899999999999 9999999
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecC----ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
++ .|+.|++||+++++.. ..+..+ ...+..+.+ +++.++++++.||.|++||+.+++.+.....
T Consensus 270 ~~-~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 270 VG-ADATIRVWDVTTSKCV-----QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp EE-TTSEEEEEETTTTEEE-----EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred Ec-CCCcEEEEECCCCcEE-----EEEcCCCCcccCceeEEEe------CCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 98 7999999999987633 333332 233444555 4789999999999999999999888776665
Q ss_pred ceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008058 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~ 372 (579)
+...+.+.. + ++ +++++.++.++.++.. .++ .+|...|.+++| +++..+ ++++.|+
T Consensus 338 ~~~~v~~~~-~-~~-------l~~~~~dg~i~~w~~~-----------~~~--~~~~~~v~~~~~-~~~~~l-~~~~~d~ 393 (615)
T 1pgu_A 338 HNKGITALT-V-NP-------LISGSYDGRIMEWSSS-----------SMH--QDHSNLIVSLDN-SKAQEY-SSISWDD 393 (615)
T ss_dssp CSSCEEEEE-T-TT-------TEEEETTSCEEETTTT-----------EEE--CCCCSCEEEEEC-CSTTCC-EEEETTT
T ss_pred CCCCEEEEE-e-cC-------cEEECCCCeEEEEEch-----------hhc--CcccCceEEEEE-CCCcEE-EEEeCCC
Confidence 554444443 2 22 8888888888877643 233 689999999999 667788 8999999
Q ss_pred cccceeeee
Q 008058 373 SKRGRYVQN 381 (579)
Q Consensus 373 ~~~~w~~~~ 381 (579)
.+++|++..
T Consensus 394 ~i~~~~~~~ 402 (615)
T 1pgu_A 394 TLKVNGITK 402 (615)
T ss_dssp EEEETTEEE
T ss_pred CEEEEEccc
Confidence 999999853
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.5e-33 Score=278.73 Aligned_cols=244 Identities=16% Similarity=0.227 Sum_probs=199.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-------EEEEeccccccccccccccccccccccCccceEEeee
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
...| .+++|+|+|++||+|+.|+.++|||+.+.. ....+.+|...+. ++.|.+
T Consensus 108 ~~~v--~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~------------------~~~~~~ 167 (380)
T 3iz6_a 108 CPWV--MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS------------------SCQYVP 167 (380)
T ss_dssp CTTC--CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC------------------CCBCCS
T ss_pred CCCE--EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE------------------EEEEec
Confidence 4567 455999999999999999999999987542 1122333333333 344444
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-CC
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TG 149 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~-~~ 149 (579)
.+ +..+++|+.|+.|++||+.+++.+..+ ..+|...|.++.|+| ++++|++|+.|++|++||++ .+
T Consensus 168 ~~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 168 DQ--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp SS--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred CC--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 32 556999999999999999999887554 257999999999987 88999999999999999998 55
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCC-------CEEEEEEecCCCEEEEEecC
Q 008058 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~l~s~s~~ 220 (579)
+.+..+.+|...|++++|+|+|++|++|+ |+|++||+++++.+..+..+.. .|++++|+|+|+++++++ .
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 318 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-S 318 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-T
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-C
Confidence 78888999999999999999999999998 8999999999999888765432 489999999999999987 6
Q ss_pred CCeEEEEEcCCCccccceeEEee----ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 221 ERYIALWRTDGVKKQSASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
||.|++||+..++.. ..+ ..+...+.++.|+ |+|.+|++|+.||+|++|++...+
T Consensus 319 dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 319 NGDCYVWDTLLAEMV-----LNLGTLQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEETTTCCEE-----EEECCSCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEECCCCceE-----EEEecccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999877633 222 3456677888888 999999999999999999987654
No 61
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=270.42 Aligned_cols=242 Identities=10% Similarity=0.098 Sum_probs=186.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccccccccccccccccccccccCccceEEee
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
+..+| .+++|+|+|++||+|+.|++|+|||... .++...+.+|...+..+.|+++
T Consensus 57 h~~~v--~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---------------- 118 (330)
T 2hes_X 57 HKKAI--RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND---------------- 118 (330)
T ss_dssp CCSCE--EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT----------------
T ss_pred ccCCE--EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----------------
Confidence 34678 5559999999999999999999999853 3455666666555554444444
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 008058 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG- 149 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~- 149 (579)
+.+|++|+.|+.|++||+... +++.. ..+|...|.+++|+|++++|++++.|++|++||..++
T Consensus 119 -----------g~~las~s~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 119 -----------GYYLATCSRDKSVWIWETDESGEEYECISV-LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -----------SCEEEEEETTSCEEEEECCTTCCCCEEEEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred -----------CCEEEEEeCCCEEEEEeccCCCCCeEEEEE-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999999532 34433 4689999999999999999999999999999998776
Q ss_pred -ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--------eeeEEeec-CCCCEEEEEEecCCCEEE
Q 008058 150 -SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 150 -~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~--------~~~~~~~~-h~~~v~~l~~~~~~~~l~ 215 (579)
+++..+.+|...|.+++|+|+ +.++++|+ ++|++||++++ .....+.+ |...|.+++|++++ +|+
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 678889999999999999998 67888887 89999998754 34555555 99999999999776 778
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEe--eecCceeeEeEEecCCcccC--CCcEEEEEEcCCeEEEEECCC
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLA--MEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~ 283 (579)
+++ .|+.|++|+...++.. .... ..|....+.++.|+ | ++.+|++|+.||+|++||++.
T Consensus 266 s~~-~dg~v~iw~~~~~~~~---~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 266 SVG-ADGVLAVYEEVDGEWK---VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEE-TTSCEEEEEEETTEEE---EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred EEe-CCCEEEEEEcCCCceE---EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence 887 7999999998766321 1112 23443367778887 6 689999999999999999764
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.9e-32 Score=268.23 Aligned_cols=281 Identities=13% Similarity=0.189 Sum_probs=221.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++|++++ ||.|++||+.++.....+... ........+.++.|.+.
T Consensus 50 h~~~v--~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~----- 108 (337)
T 1gxr_A 50 HGEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL-------------DCLNRDNYIRSCKLLPD----- 108 (337)
T ss_dssp CSSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE-------------ECSCTTSBEEEEEECTT-----
T ss_pred CCCce--EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc-------------cccCCCCcEEEEEEcCC-----
Confidence 35678 5559999999999999 999999999876532211100 00011234556666653
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
+.++++++.+|.|++||+.+++ .... ..+|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|.
T Consensus 109 ----~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 109 ----GCTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp ----SSEEEEEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ----CCEEEEEcCCCcEEEEECCCCCcceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence 7789999999999999999887 3333 35789999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
..+.+++|+|+++++++++ |.|++||+++++.+..+. |...+.+++|+|+++++++++ .|+.|++||++..+..
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~-- 259 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY-- 259 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE--
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeE--
Confidence 9999999999999999987 899999999999888775 788999999999999999987 7999999999887532
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (579)
....+...+..+.|+ |++++|++++.||.|++||+.+++.+....... .+.+. .++++++ .++++
T Consensus 260 ----~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~-~~s~~~~----~l~~~ 324 (337)
T 1gxr_A 260 ----QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSC-DISVDDK----YIVTG 324 (337)
T ss_dssp ----EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEE-EECTTSC----EEEEE
T ss_pred ----EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEE-EECCCCC----EEEEe
Confidence 344455567778887 999999999999999999999987764322111 11111 1466666 78888
Q ss_pred cccceecCCc
Q 008058 318 KLQDIVKPAS 327 (579)
Q Consensus 318 ~~~~~~~~~~ 327 (579)
+.++.++.++
T Consensus 325 ~~dg~i~iw~ 334 (337)
T 1gxr_A 325 SGDKKATVYE 334 (337)
T ss_dssp ETTSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 8877665543
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.4e-32 Score=268.73 Aligned_cols=241 Identities=14% Similarity=0.158 Sum_probs=196.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|++.++++|+.|++|++||+.++++...+.+|...+..+.|+++
T Consensus 76 ~~~V--~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~------------------------ 129 (343)
T 2xzm_R 76 NHFV--SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD------------------------ 129 (343)
T ss_dssp SSCE--EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC------------------------
Confidence 4567 55699999999999999999999999999999999887776666666555
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCc
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~----------~~l~s~~~dg~v~iwd~~~~~ 150 (579)
+..+++++.|+.|++||+...... .. ..+|...|.+++|+|++ .+|++++.||+|++|| ..++
T Consensus 130 ---~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 130 ---NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp ---TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTE
T ss_pred ---CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCc
Confidence 788999999999999999854332 22 23788999999999987 7899999999999999 4677
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw 227 (579)
....+.+|...|.+++|+|+|++|++|+ |.|++||+.+ ......+ .+...|.+++|+|++++++++ .|+.|++|
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~--~d~~v~iw 281 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG--TDQGVKIF 281 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE--ESSCEEEE
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE--CCCCEEEE
Confidence 7788999999999999999999999998 8999999954 4444444 356679999999999877654 37889999
Q ss_pred EcCCCccccceeEEeee-----------cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 228 RTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
++.+.+.. .+..+. .+...+..++|+ |+|.+|++|+.||.|++|+++++.
T Consensus 282 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 282 NLMTQSKA---PVCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ESSSCCSC---SEEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EeCCCCCC---ceEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence 99876543 111111 234456778887 999999999999999999987654
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-32 Score=275.26 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=187.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.| .+++|+|++. +++++.||+|+|||+.+++........ ..+| ...+.+++|.+.
T Consensus 95 ~~V--~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~-------------~~~h-~~~V~~v~~spd------- 150 (357)
T 4g56_B 95 AGV--TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFA-------------KYEH-DDIVKTLSVFSD------- 150 (357)
T ss_dssp SCE--EEEEEETTTE-EEEEETTSCEEEC--------CCCCEE-------------ECCC-SSCEEEEEECSS-------
T ss_pred CCE--EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeec-------------cCCC-CCCEEEEEECCC-------
Confidence 457 5669999986 556788999999999888754322100 0022 224456666553
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--cCCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--ASTK 160 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~ 160 (579)
+.+|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. ++++++.||+|++||+++++....+. .+..
T Consensus 151 --g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 151 --GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp --SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence 788999999999999999999988776 67999999999999875 68999999999999999988776544 4566
Q ss_pred CeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc
Q 008058 161 GISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 161 ~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
.+.+++|+|++ .++++|+ +.|++||+++++.+.++.+|...|++++|+|++. +|++++ .|++|++||+++++.
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~-- 304 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEV-- 304 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEE--
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcE--
Confidence 89999999974 6777776 8999999999999999999999999999999874 677776 799999999988753
Q ss_pred ceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCce
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
...+.| ...+..++|+ | ++.+|++++.||+|++|++.+..
T Consensus 305 ---~~~~~H-~~~V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 305 ---FRDLSH-RDFVTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ---EEECCC-SSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECC---
T ss_pred ---eEECCC-CCCEEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCCC
Confidence 234444 4556778887 7 78999999999999999986543
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.2e-33 Score=272.64 Aligned_cols=246 Identities=15% Similarity=0.165 Sum_probs=194.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+..+| .+++|+|+|++||+|+.|++|+|||+.++. ++..+.+|...+. +++|.++.
T Consensus 12 H~~~V--~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~------------------~v~~~~~~-- 69 (316)
T 3bg1_A 12 HEDMI--HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW------------------QVAWAHPM-- 69 (316)
T ss_dssp --CCE--EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE------------------EEEECCGG--
T ss_pred ccCeE--EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE------------------EEEeCCCC--
Confidence 35678 555999999999999999999999998775 4566766665554 44453321
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce---e
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---L 152 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~---~ 152 (579)
++.+|++|+.|+.|++||+.+++ .... ..+|...|++++|+|+ +.+|++|+.|++|++||+..+.. .
T Consensus 70 -----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 70 -----YGNILASCSYDRKVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp -----GSSCEEEEETTSCEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred -----CCCEEEEEECCCEEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 06789999999999999999874 3333 3689999999999998 78999999999999999987632 3
Q ss_pred eEeecCCCCeeEEEEccC-----------------CCEEEEEC--CeEEEEECCCC---eeeEEeecCCCCEEEEEEecC
Q 008058 153 GKFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN 210 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~-----------------g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~ 210 (579)
..+.+|...|.+++|+|+ +++|++|+ +.|++||++.. +.+..+.+|...|.+++|+|+
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence 456778889999999997 46888887 89999999765 467788999999999999998
Q ss_pred C----CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 211 G----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 211 ~----~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
+ .+|++++ .|++|++|++........ ....+..+...+..+.|+ |++.+|++++.||+|++|+..
T Consensus 224 ~~~~~~~las~s-~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCS-QDGRVFIWTCDDASSNTW-SPKLLHKFNDVVWHVSWS-----ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEE-TTCEEEEEECSSTTCCCC-BCCEEEECSSCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEc-CCCeEEEEEccCccccch-hhhhhhcCCCcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence 6 7888887 799999999986321100 011122334566778887 999999999999999999965
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=261.10 Aligned_cols=273 Identities=15% Similarity=0.238 Sum_probs=217.0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++||+++ +||+|. |++|+|||+.+|+++..++.+.. ...+++++|.+. +++++
T Consensus 31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~----------------~~~V~~v~~~~~---------~~~l~ 83 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQP----------------GEYISSVAWIKE---------GNYLA 83 (318)
T ss_dssp EEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCST----------------TCCEEEEEECTT---------SSEEE
T ss_pred EEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCC----------------CCeEEEEEECCC---------CCEEE
Confidence 5999986 777765 99999999999998887753221 223455555553 78899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p 169 (579)
+|+.||.|++||+.+++.+..+ .+|...+.++.+ ++..+++++.++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999999999988766 679988887665 5679999999999999998765 45667889999999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEE--EEecCCCeEEEEEcCCCccccceeEE
Q 008058 170 DGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 170 ~g~~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~--s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++++++++ |.|++||+++++. ......|.+.|..+.++|++..++ .+++.++.|++||....... .
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~ 235 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S 235 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----E
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----c
Confidence 999999998 8999999988653 455667889999999999876443 23447899999999887533 2
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
...+.. .+....+. |++..+++++ .||.|++||+++++.+.
T Consensus 236 ~~~~~~-~v~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~------------------------------- 278 (318)
T 4ggc_A 236 AVDAHS-QVCSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------- 278 (318)
T ss_dssp EEECSS-CEEEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred ccccee-eeeeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE-------------------------------
Confidence 333333 34455565 7888877765 69999999987665432
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
++.+|...|.+++|+|||.+| +|+|.|+++++|++.
T Consensus 279 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 279 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 314 (318)
T ss_dssp ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 345788899999999999999 999999999999983
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.7e-31 Score=273.32 Aligned_cols=272 Identities=16% Similarity=0.245 Sum_probs=222.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+++++|++|++|+.||+|++||..+++....+.+|...+. ++.| + +..+++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~------------------~l~~---~--------~~~l~s 188 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------------------CLQY---D--------ERVIIT 188 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------------------EEEC---C--------SSEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE------------------EEEE---C--------CCEEEE
Confidence 4555899999999999999999999999988887665444 4444 1 678999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---eEeecCCCCeeEEEEc
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS 168 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~l~~~ 168 (579)
|+.||.|++||+.+++.+..+ .+|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 999999999999999988776 5799999999996 459999999999999999988765 667889999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
+++++++|+ |.|++||+++++.+.++.+|...|.++.|+ +.++++++ .|+.|++||+++++. +..+..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence 678898887 899999999999999999999999999995 67888887 799999999998763 3455555
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCC
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
...+.++.+ ++.+|++|+.||.|++||+.++...... .
T Consensus 336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------------~-------------------- 373 (435)
T 1p22_A 336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRAP---------------A-------------------- 373 (435)
T ss_dssp SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTSC---------------T--------------------
T ss_pred cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCcccc---------------c--------------------
Confidence 566666655 6789999999999999998654321100 0
Q ss_pred ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.......+.+|...|.+++| ||.++ ++++.|+++++|++.+
T Consensus 374 -----------~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 374 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN 414 (435)
T ss_dssp -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred -----------cchheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence 00123355689999999999 88899 9999999999999853
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-32 Score=279.65 Aligned_cols=246 Identities=13% Similarity=0.161 Sum_probs=205.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.++| .+++|+|++++|++|+.||.|++||+.+ ......+..|...+ .++.|.+.+
T Consensus 67 ~~~v--~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~~~~~- 125 (416)
T 2pm9_A 67 DSKF--NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV------------------KTVKFNAKQ- 125 (416)
T ss_dssp SSCE--EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCC------------------CEEEECSSS-
T ss_pred CCce--EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccce------------------EEEEEcCCC-
Confidence 4567 5669999999999999999999999987 34677676555444 455555432
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCe------EEEEe--cCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 008058 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRL--SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~--~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~ 149 (579)
+.++++++.||.|++||+.+++ ....+ ..+|...|.+++|+|+ +.++++++.||.|++||++++
T Consensus 126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 6789999999999999999876 32222 3578999999999999 789999999999999999999
Q ss_pred ceeeEeecC------CCCeeEEEEccCC-CEEEEEC--C---eEEEEECCCC-eeeEEee-cCCCCEEEEEEec-CCCEE
Q 008058 150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV 214 (579)
Q Consensus 150 ~~~~~~~~~------~~~v~~l~~~p~g-~~l~~~~--g---~i~vwd~~~~-~~~~~~~-~h~~~v~~l~~~~-~~~~l 214 (579)
+.+..+..+ ...|.+++|+|++ .++++++ + .|++||++++ +.+..+. +|...|.+++|+| ++++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 999888876 6799999999997 5788777 5 9999999986 6777788 8999999999999 89999
Q ss_pred EEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceee
Q 008058 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
++++ .|+.|++||+++++. +..+..+...+..+.|+ |++ .+|++++.||.|++||+.++...
T Consensus 279 ~s~~-~dg~v~~wd~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 279 LSSG-RDNTVLLWNPESAEQ-----LSQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEE-SSSEEEEECSSSCCE-----EEEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEe-CCCCEEEeeCCCCcc-----ceeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9988 799999999998763 34555666677788887 888 89999999999999999887644
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-31 Score=298.59 Aligned_cols=244 Identities=14% Similarity=0.125 Sum_probs=205.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++|++|+.||.|+|||+.+++....+..|...+..+.|+++
T Consensus 54 ~~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 108 (814)
T 3mkq_A 54 TETPV--RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT----------------------- 108 (814)
T ss_dssp CSSCE--EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred CCCcE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC-----------------------
Confidence 35678 55599999999999999999999999999999888877665555555444
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 159 (579)
+..+++++.||.|++||+.++........+|...|.+++|+| +++.+++++.||.|++||+.+++....+..+.
T Consensus 109 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 109 ----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp ----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred ----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 778999999999999999988444444568999999999999 88899999999999999999888888777665
Q ss_pred CCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 160 KGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 160 ~~v~~l~~~p--~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
..+.+++|+| +++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .||.|++||+.+++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~- 262 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKV- 262 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSE-
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE-
Confidence 7899999999 999999998 8999999999999999999999999999999999999988 799999999988763
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcE-EEEEEcCCeEEEEECCCce
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~ 285 (579)
...+..+...+.++.|+ |++.. +++++.++.+.+|++....
T Consensus 263 ----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 263 ----EKTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp ----EEEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCS
T ss_pred ----EEEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCC
Confidence 34555555667778887 88763 3555567788899876543
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.7e-31 Score=258.22 Aligned_cols=239 Identities=21% Similarity=0.328 Sum_probs=201.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|+|++|++|+.||.|++||+.+++++..+..|...+..+.|+++
T Consensus 65 ~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 118 (312)
T 4ery_A 65 KLGI--SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ------------------------ 118 (312)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------------
T ss_pred CCce--EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------------
Confidence 4567 55699999999999999999999999999999888877665554444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~ 161 (579)
+.++++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+++++.+..+. .+...
T Consensus 119 ---~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 119 ---SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp ---SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred ---CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 788999999999999999999888666 5799999999999999999999999999999999998887764 45568
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE--EEEe-cCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~--l~~~-~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
+.+++|+|+++++++++ |.|++||+++++.+..+.+|...+.. ..++ +++.++++++ .|+.|++||+.+++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~-- 271 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI-- 271 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE--
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh--
Confidence 99999999999999988 89999999999999999988765433 2344 6778888877 799999999988763
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECC
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 282 (579)
+..+..+...+..+.|+ |++.++++++ .||+|++|+.+
T Consensus 272 ---~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ---VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred ---hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence 34555566667777887 9999999997 59999999864
No 71
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=274.14 Aligned_cols=275 Identities=11% Similarity=0.130 Sum_probs=225.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++|++|+.||.|++|| .++.....+..|...+..+.|+++
T Consensus 108 ~~~v--~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 160 (425)
T 1r5m_A 108 TNQV--TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD------------------------ 160 (425)
T ss_dssp CBCE--EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT------------------------
T ss_pred CCce--EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC------------------------
Confidence 3478 5669999999999999999999999 678888888766655554444444
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC---------------EEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~---------------V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
+.++++++.+|.|++||+.+++.+..+ ..+... +.++.|+|++ .+++++.||.|++||+.
T Consensus 161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 161 ---GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp ---SSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred ---CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 788999999999999999999988666 345555 8999999975 58899999999999999
Q ss_pred CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
+++.+..+..|...|.+++|+|+++++++++ |.|++||+++++.+..+.+|...|.++.|+|++ ++++++ .|+.|+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~ 313 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR 313 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence 9999999999999999999999999999988 899999999999999999999999999999999 888887 799999
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce--------------------
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-------------------- 285 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------- 285 (579)
+||+++++. ...+..+...+..+.|+ |++.+|++++.||.|++||+.+++
T Consensus 314 i~d~~~~~~-----~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 314 LWSLKQNTL-----LALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTTTEE-----EEEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred EEECCCCcE-----eEecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence 999988763 34455556677788887 999999999999999999998887
Q ss_pred eecccCCceE--EeeecccCcccccccchhhhhccccceecCC
Q 008058 286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 286 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
.+.....+.. .+.+.. ++++++ .+++++.++.++.+
T Consensus 384 ~~~~~~~~~~~~~v~~~~-~s~~~~----~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 384 LYASYQSSQDNDYIFDLS-WNCAGN----KISVAYSLQEGSVV 421 (425)
T ss_dssp EEEEECCTTCCCCEEEEE-ECTTSS----EEEEEESSSCCEEE
T ss_pred hhhhhcCcccCCceEEEE-ccCCCc----eEEEEecCceEEEE
Confidence 5555444422 222222 566666 77778777755543
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.2e-31 Score=262.38 Aligned_cols=253 Identities=15% Similarity=0.200 Sum_probs=204.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----eEEEEeccccccccccccccccccccccCccceEEeeec-
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV- 76 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~- 76 (579)
+.++| .+++|+|+|++||+|+.||+|+|||+.++ +....+..|... +++++|.+.
T Consensus 10 H~~~v--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~ 69 (351)
T 3f3f_A 10 HDDLV--HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS------------------IVAIDWASPE 69 (351)
T ss_dssp CSSCE--EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC------------------EEEEEECCGG
T ss_pred cccce--eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc------------------EEEEEEcCCC
Confidence 45788 55699999999999999999999999876 355555555443 455666553
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEe
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEID 145 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd 145 (579)
+ +.+|++|+.||.|++||+.++ +.+..+ .+|...|.+++|+|+ ++++++++.||.|++||
T Consensus 70 d--------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd 140 (351)
T 3f3f_A 70 Y--------GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD 140 (351)
T ss_dssp G--------CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred C--------CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence 2 678999999999999999987 344444 679999999999999 99999999999999999
Q ss_pred CCCCceeeEee-------------cCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEE
Q 008058 146 PLTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFM 205 (579)
Q Consensus 146 ~~~~~~~~~~~-------------~~~~~v~~l~~~p~---g~~l~~~~--g~i~vwd~~~~~~--~~~~~~h~~~v~~l 205 (579)
+++++.+..+. .|...+.+++|+|+ +.++++++ +.+.+|+...++. +..+.+|...|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 99887655443 56779999999997 88998888 7787777777654 77788999999999
Q ss_pred EEecCC----CEEEEEecCCCeEEEEEcCCCccc-----------------------------------------cceeE
Q 008058 206 TFSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCV 240 (579)
Q Consensus 206 ~~~~~~----~~l~s~s~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~ 240 (579)
+|+|++ ++|++++ .|+.|++||++.+... ....+
T Consensus 221 ~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp EECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred EECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 999998 7888887 7999999999864210 01244
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
..+..+...+..+.|+ |++++|++++.||.|++||+.+++.+..
T Consensus 300 ~~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 300 SEHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 4555566678888888 9999999999999999999998765543
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-31 Score=267.81 Aligned_cols=248 Identities=13% Similarity=0.206 Sum_probs=204.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++|++|+.||.|++||+.+++.+..+..|... +.++.|.
T Consensus 134 ~~~v--~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------v~~~~~~-------- 185 (401)
T 4aez_A 134 STYV--ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------------VGCLSWN-------- 185 (401)
T ss_dssp TCCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------------EEEEEEE--------
T ss_pred CCCE--EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------------eEEEEEC--------
Confidence 4678 56699999999999999999999999999998888755543 3455661
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++|+.+|.|++||+...........+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 66899999999999999995443334446799999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCcccc
Q 008058 163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS 236 (579)
Q Consensus 163 ~~l~~~p~g~-~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~~d~~i~vwd~~~~~~~~ 236 (579)
.+++|+|++. ++++++ +.|++||+++++.+..+. |...|.+++|+|+++++++++ ..|+.|++|++.+++..
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~- 340 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT- 340 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence 9999999765 555542 899999999999988886 678899999999999998853 36999999999886533
Q ss_pred ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
....+..+...+..+.|+ |+|.+|++++.||.|++|++.+++.+...
T Consensus 341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC-------
T ss_pred --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 334455566667778887 99999999999999999999998876543
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.9e-31 Score=272.90 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=197.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
.+|+|+|++|++|+.||.|++||+.+++....+..|...+..+.|+++ +.+|+
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------~~~l~ 155 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---------------------------GEALI 155 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---------------------------SSEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC---------------------------CCEEE
Confidence 378999999999999999999999999988877766665555555444 78899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC---CCCee----
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS---- 163 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~---- 163 (579)
+|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||+|++||+++++.+..+..+ ...+.
T Consensus 156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 9999999999999999887666 679999999999999999999999999999999999999888753 33444
Q ss_pred -----------------EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCC-EEEEEecCCC
Q 008058 164 -----------------CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER 222 (579)
Q Consensus 164 -----------------~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~-~l~s~s~~d~ 222 (579)
+++|+|+|+++++++ |.|++||+++++.+..+. +|...|.+++|+|+++ ++++++ .||
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg 313 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG 313 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence 455578999999988 899999999998877764 5889999999999999 888887 799
Q ss_pred eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
.|++||+++++.. ......++...+.++++ +++.+|++++.||.|++|++...
T Consensus 314 ~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 314 MLAQWDLRSPECP---VGEFLINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEEETTCTTSC---SEEEEESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred eEEEEEcCCCcCc---hhhhhccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence 9999999987542 11222345667777766 57889999999999999998764
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-31 Score=265.76 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=219.3
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+.++| .+++|+|+|++|++++.||.|+||++.++. ....+..|. ..+.+++|.+.
T Consensus 10 h~~~v--~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~-- 67 (342)
T 1yfq_A 10 PKDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK------------------HPLLCCNFIDN-- 67 (342)
T ss_dssp CSSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS------------------SCEEEEEEEES--
T ss_pred CCCcE--EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC------------------CceEEEEECCC--
Confidence 35678 566999999999999999999999998776 223333333 34556677664
Q ss_pred ccccccCCc-EEEEEECCCeEEEEEc-cCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------
Q 008058 79 KKKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------ 148 (579)
Q Consensus 79 ~~~~~~~~~-~l~~~~~~g~i~iwd~-~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~------ 148 (579)
+. ++++|+.+|.|++||+ .+++. ....+ |...|++++|+| ++.+++++.|+.|++||+++
T Consensus 68 -------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 68 -------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp -------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred -------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence 67 8999999999999999 88766 33367 999999999999 99999999999999999987
Q ss_pred ---CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-Ce--eeEEeecCCCCEEEEEEec-CCCEEEEEec
Q 008058 149 ---GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HK--KMQKFSGHPGAVRFMTFSD-NGKYVLSSAV 219 (579)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-~~--~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~ 219 (579)
++.+..+. |...|.+++|+|++ +++++ +.|++||+++ +. .......|...|.+++|+| +++++++++
T Consensus 138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~- 213 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS- 213 (342)
T ss_dssp EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence 77777777 88899999999987 55555 8999999998 54 3334557889999999999 999999988
Q ss_pred CCCeEEEEEcCCC--ccccceeEEeeecCc---------eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 220 GERYIALWRTDGV--KKQSASCVLAMEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 220 ~d~~i~vwd~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
.|+.|++|+++.. ... ......+..+. ..+..+.|+ |++.+|++++.||.|++||+.+++.+.
T Consensus 214 ~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTSEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhHhh
Confidence 6999999999876 100 00122333332 367788887 999999999999999999987765432
Q ss_pred ccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecc
Q 008058 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMS 367 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s 367 (579)
. +.+| ...|.+++ |||.+| ++
T Consensus 288 ~-------------------------------------------------------~~~~h~~~v~~~~--~~~~~l-~s 309 (342)
T 1yfq_A 288 N-------------------------------------------------------FAKFNEDSVVKIA--CSDNIL-CL 309 (342)
T ss_dssp E-------------------------------------------------------CCCCSSSEEEEEE--ECSSEE-EE
T ss_pred h-------------------------------------------------------hhcccCCCceEec--CCCCeE-EE
Confidence 2 1244 66788888 999999 99
Q ss_pred ccceec-ccceee
Q 008058 368 QSLLKS-KRGRYV 379 (579)
Q Consensus 368 ~s~d~~-~~~w~~ 379 (579)
++.|++ .+.++.
T Consensus 310 ~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 310 ATSDDTFKTNAAI 322 (342)
T ss_dssp EEECTHHHHCSSS
T ss_pred EecCCcccccccc
Confidence 999998 666653
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.8e-31 Score=257.48 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=189.1
Q ss_pred CcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+.+|++|+.|+.|++||+..+ +.+..+ .+|.++|++++|+| ++++|++|+.|++|++||+.+++ .+..+.+|.
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 99 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence 889999999999999999754 444444 68999999999986 48999999999999999998874 566778899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecC-------------CCEEEEEecC
Q 008058 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN-------------GKYVLSSAVG 220 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~-------------~~~l~s~s~~ 220 (579)
..|.+++|+|+ |.+|++++ +.|++||++++. ....+.+|...|.+++|+|+ +++|++++ .
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~ 178 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 178 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-T
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-C
Confidence 99999999997 88999988 899999998763 24567899999999999997 46888887 7
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC---CcEEEEEEcCCeEEEEECCCceeecccCCceEEe
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
|++|++||++.++.. ......+..+...+..+.|+ |+ +.+|++++.||+|++||+++..... ...
T Consensus 179 D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~iWd~~~~~~~~-----~~~- 246 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCIIWTQDNEQGPW-----KKT- 246 (297)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEE-
T ss_pred CCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEEEEeCCCCCcc-----cee-
Confidence 999999999876522 11334556667778888888 77 4899999999999999976532100 000
Q ss_pred eecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
. . ....|...|.+++|+|||.+| ++++.|+++++|
T Consensus 247 ---------------~-~----------------------------~~~~~~~~v~~~~~s~~g~~l-as~~~D~~v~lw 281 (297)
T 2pm7_B 247 ---------------L-L----------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 281 (297)
T ss_dssp ---------------E-S----------------------------SSSCCSSCEEEEEECSSSCCE-EEEETTSCEEEE
T ss_pred ---------------e-e----------------------------ecccCCCcEEEEEECCCCCEE-EEEcCCCcEEEE
Confidence 0 0 001356689999999999999 999999999999
Q ss_pred ee
Q 008058 378 YV 379 (579)
Q Consensus 378 ~~ 379 (579)
+.
T Consensus 282 ~~ 283 (297)
T 2pm7_B 282 KE 283 (297)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-31 Score=265.23 Aligned_cols=250 Identities=16% Similarity=0.200 Sum_probs=203.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.++| .+++|+|+|++||+|+.||.|+|||+. +++....+..|...+ +++.|.+..
T Consensus 10 h~~~v--~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v------------------~~~~~~~~~-- 67 (379)
T 3jrp_A 10 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV------------------WRVDWAHPK-- 67 (379)
T ss_dssp CCCCE--EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE------------------EEEEECCGG--
T ss_pred CcccE--EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcE------------------EEEEeCCCC--
Confidence 45788 556999999999999999999999998 556666676555444 455554321
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~ 153 (579)
++.+|++|+.||.|++||+.+++ .+..+ .+|...|++++|+|+ +++|++++.||.|++||+.++. ...
T Consensus 68 -----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 68 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp -----GCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred -----CCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence 16789999999999999999987 44343 679999999999999 9999999999999999998873 444
Q ss_pred EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecC---C
Q 008058 154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---G 211 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--g~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~---~ 211 (579)
.+..|...|.+++|+| +++++++++ |.|++||+++++ ....+.+|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 5778999999999999 689999987 899999998754 45678899999999999999 8
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
++|++++ .|+.|++||++.+.............+...+..+.|+ |++.+|++++.||.|++|++....
T Consensus 222 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence 8999887 7999999999987533111222223355567778887 999999999999999999987543
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-31 Score=265.94 Aligned_cols=243 Identities=12% Similarity=0.202 Sum_probs=202.9
Q ss_pred CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.+| .+++|+|+ |++|++|+.||.|++||+.+++.+..+..|...+.. +.|.+.+
T Consensus 70 ~~v--~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~------------------~~~~~~~-- 127 (366)
T 3k26_A 70 ENF--YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE------------------LKFHPRD-- 127 (366)
T ss_dssp CCE--EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEE------------------EEECSSC--
T ss_pred CcE--EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEE------------------EEECCCC--
Confidence 557 66699999 679999999999999999999999888766655554 4444422
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
+.++++|+.||.|++||+.+++.+..+. .+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 7889999999999999999998876662 57999999999999999999999999999999998765544443
Q ss_pred ----------------------------CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--------------eE
Q 008058 158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--------------MQ 193 (579)
Q Consensus 158 ----------------------------~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--------------~~ 193 (579)
|...|.+++|+ ++++++++ |.|++||+++++. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 88899999998 67899888 8999999987643 78
Q ss_pred EeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC--ceeeEeEEecCCcccCCCcEEEE
Q 008058 194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 194 ~~~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s 269 (579)
.+.+|...|.+++|+|+ +++|++++ .||.|++||+..++... .....+..+ ...+..+.|+ |++++|++
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s 352 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFS-----RDSSILIA 352 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence 88999999999999999 99999987 79999999999876442 122334444 5677888888 99999999
Q ss_pred EEcCCeEEEEECCC
Q 008058 270 ISETGVCYIWYGQN 283 (579)
Q Consensus 270 ~~~dg~i~iwd~~~ 283 (579)
++.||.|++||+.+
T Consensus 353 ~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 353 VCDDASIWRWDRLR 366 (366)
T ss_dssp EETTSEEEEEEC--
T ss_pred EeCCCEEEEEEecC
Confidence 99999999999753
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.5e-31 Score=267.56 Aligned_cols=280 Identities=14% Similarity=0.180 Sum_probs=217.5
Q ss_pred EEEccCCCE-EEEEeCCCcEEEEECCCCeEE----EEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058 11 TSFSPALDY-FAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 11 ~~fs~dg~~-las~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
++++|+... +++++.||.|+||++...... ..+.+|. ..+++++|.+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~------------------~~V~~~~~~p~~-------- 93 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT------------------APVLDIAWCPHN-------- 93 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS------------------SCEEEEEECTTC--------
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC------------------CCEEEEEeCCCC--------
Confidence 478887754 445788999999998654321 1222232 345667776633
Q ss_pred CcEEEEEECCCeEEEEEccCC-------eEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEe--
Q 008058 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~-- 155 (579)
+.+|++|+.||.|++||+.++ +.+..+ .+|...|++++|+|++ ++|++++.||.|++||+.+++.+..+
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 788999999999999999987 344344 5799999999999998 69999999999999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCC-EEEEEEecCCCEEEEEe--cCCCeEEEEEc
Q 008058 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT 229 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~-v~~l~~~~~~~~l~s~s--~~d~~i~vwd~ 229 (579)
..|...|.+++|+|++++|++++ |.|++||+++++.+..+ .+|.+. +.++.|+|++++++++. +.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 78999999999999999999987 89999999999999998 788876 89999999999888872 26999999999
Q ss_pred CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCcee-ecccCCceEEeeecccCcccc
Q 008058 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (579)
+..+... ......+.. .+..+.|+ |++.+|+++ +.||.|++||+.+++. +..
T Consensus 253 ~~~~~~~--~~~~~~~~~-~v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------ 306 (402)
T 2aq5_A 253 KHLEEPL--SLQELDTSS-GVLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------ 306 (402)
T ss_dssp TBCSSCS--EEEECCCCS-SCEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred ccccCCc--eEEeccCCC-ceeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence 8876421 223333443 35566777 899999754 5799999999876542 100
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
+... .|...+.+++|+|||.++ +++ |+.+++|++..
T Consensus 307 ----------------------------------l~~~-~~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~ 342 (402)
T 2aq5_A 307 ----------------------------------LSMF-SSKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE 342 (402)
T ss_dssp ----------------------------------EEEE-CCSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred ----------------------------------eccc-ccCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence 0011 145689999999999998 664 56899999853
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=6.7e-30 Score=256.02 Aligned_cols=280 Identities=13% Similarity=0.099 Sum_probs=216.2
Q ss_pred CCCcccceEEEEccC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeccccccccccccccccccccccCccceEEeeec
Q 008058 2 GSSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 2 ~~~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+.++| .+++|+|+ |++|++|+.||.|+|||+.+ +... ..+..|...+. +++|.+.
T Consensus 38 h~~~v--~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~ 97 (368)
T 3mmy_A 38 PDDSI--GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL------------------DVCWSDD 97 (368)
T ss_dssp CSSCE--EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE------------------EEEECTT
T ss_pred CCCce--EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE------------------EEEECcC
Confidence 35778 56699999 69999999999999999987 5554 56665555554 4444442
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (579)
+.+|++++.||.|++||+.+++.+.. .+|...|++++| +|++++|++++.||.|++||+++++.+..
T Consensus 98 ---------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 98 ---------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred ---------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 78899999999999999999988753 469999999999 89999999999999999999999999998
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCE----EEEEecCCCeEEE
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIAL 226 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~----l~s~s~~d~~i~v 226 (579)
+..+. .+.++.+.++ .+++++ +.+++|+++........ ..+...+..+.+.++... +++++ .|+.|++
T Consensus 167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i 242 (368)
T 3mmy_A 167 LQLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI 242 (368)
T ss_dssp EECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred EecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence 88664 6677777654 444444 89999999876543322 234456677777766554 88877 7999999
Q ss_pred EEcCCCccccceeEEeeecCce------------eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce
Q 008058 227 WRTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (579)
|+++...... ....+..+.. .+..+.|+ |++.+|++++.||.|++||+.+++.+.
T Consensus 243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------ 309 (368)
T 3mmy_A 243 HYINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------ 309 (368)
T ss_dssp EESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE------
T ss_pred EecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE------
Confidence 9998874311 2233333333 57788887 999999999999999999987665432
Q ss_pred EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008058 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (579)
.+.+|...|.+++|+|||.+| +++|.|+..
T Consensus 310 -------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~ 339 (368)
T 3mmy_A 310 -------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWS 339 (368)
T ss_dssp -------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCST
T ss_pred -------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEeccccc
Confidence 223567789999999999999 999888877
Q ss_pred cceee
Q 008058 375 RGRYV 379 (579)
Q Consensus 375 ~~w~~ 379 (579)
+.|++
T Consensus 340 ~~~~~ 344 (368)
T 3mmy_A 340 KGHEF 344 (368)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 77765
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=5.7e-30 Score=279.32 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=199.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.+| .+++|+|+|++|++|+.||+|+|||+.++.+...+.+|...+.++.|+++
T Consensus 429 h~~~v--~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 483 (694)
T 3dm0_A 429 HSHFV--EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD----------------------- 483 (694)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred CCCcE--EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC-----------------------
Confidence 34667 55699999999999999999999999999999999887776665555555
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
+..|++|+.|+.|++||.......... ..+|...|.+++|+|++ ..+++++.|++|++||+++++....+.+
T Consensus 484 ----~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 484 ----NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp ----SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ----CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 778999999999999998765443222 24788999999999987 5799999999999999999999999999
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|.+.|++++|+|+|++|++|+ |.|++||+++++.+..+. +...|.+++|+|++.++++++ |+.|++||++++...
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV 636 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence 999999999999999999998 899999999999888776 456899999999998877664 677999999987633
Q ss_pred cceeEEeee-----------------cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 236 SASCVLAME-----------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 236 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
. .+... .....+..+.|+ |+|++|++|+.||+|++|++.
T Consensus 637 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 637 E---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp E---EECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred h---hhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence 1 11000 011124567777 999999999999999999975
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.7e-31 Score=268.22 Aligned_cols=293 Identities=10% Similarity=-0.011 Sum_probs=219.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc---------------cc-ccccCccceEE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL---------------ER-EHLSVDYTCMK 72 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~ 72 (579)
.+++|||||+++|+++.|++|+ |...+++ +++|...+..+.|+|+- .. .| ...+.+++
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~va 92 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRVCK 92 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEEEE
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEEEE
Confidence 4559999999999999999999 7666654 46888888888776541 00 22 45578888
Q ss_pred eeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 73 WLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 73 w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
|.|. +..|++++.+|.|++||... ++..+ . |.. .|.+++|+|||++|++|+.||+|++||+.
T Consensus 93 wSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 93 PSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp ECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred ECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 9885 78899999999999999544 44444 4 554 59999999999999999999999999999
Q ss_pred CCce-------eeEe----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee---eEEe-ecCCCCEEEEEEecCC
Q 008058 148 TGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMTFSDNG 211 (579)
Q Consensus 148 ~~~~-------~~~~----~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~---~~~~-~~h~~~v~~l~~~~~~ 211 (579)
++.. +.++ .+|...|.+++|+|+| +++++. +.|++||+.+++. ..++ .+|...|.+++|+ |
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 8753 5666 5677899999999999 555555 8999999988773 3567 4788999999999 6
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEe--cCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
+++++++ +++|++||+.+++.. ....+| ...+..+.+ + |++..+++++.||+ ++|..+.
T Consensus 237 ~~LASa~--~~tIkLWd~~~~~~~----~~~~gh-~~~V~~va~~~s-----~d~~~La~a~edG~-klw~~d~------ 297 (588)
T 2j04_A 237 YKVVLTC--PGYVHKIDLKNYSIS----SLKTGS-LENFHIIPLNHE-----KESTILLMSNKTSY-KVLLEDE------ 297 (588)
T ss_dssp TEEEEEC--SSEEEEEETTTTEEE----EEECSC-CSCCCEEEETTC-----SSCEEEEECSSCEE-EEEESSS------
T ss_pred CEEEEEe--CCeEEEEECCCCeEE----EEEcCC-CceEEEEEeeeC-----CCCCEEEEEcCCCC-EEEeecc------
Confidence 7888875 699999999987642 234344 444555677 6 89999999999999 9998771
Q ss_pred cCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008058 290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (579)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (579)
.. +++++. .+++. ++.++.|+. .|.. +..+.+ ...|.+++|||||+.+ ++++
T Consensus 298 -----~~------~spd~~----l~a~~--d~~v~lW~~-----~g~~----l~~~~~-~~~I~~va~SPdG~~l-A~~~ 349 (588)
T 2j04_A 298 -----LH------VTADNI----IAPYL--EKKFKKWST-----IWNE----FNNYET-TLVIHGISLSPDGYSI-AIVY 349 (588)
T ss_dssp -----EE------EECCCS----SHHHH--HHHHHHTTT-----TTTS----SSSSCC-EEEEEEEEECTTSSEE-EEEE
T ss_pred -----EE------ECCCce----EEEEc--CCEEEEEEC-----CCCc----eeeecc-ceEEEEEEECCCCCEE-EEEE
Confidence 11 345544 33333 666666541 1111 222222 4568999999999999 7776
Q ss_pred c
Q 008058 370 L 370 (579)
Q Consensus 370 ~ 370 (579)
.
T Consensus 350 ~ 350 (588)
T 2j04_A 350 D 350 (588)
T ss_dssp E
T ss_pred e
Confidence 3
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=3.5e-30 Score=258.79 Aligned_cols=248 Identities=12% Similarity=0.171 Sum_probs=200.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccccccccccccccccccccccCccceEEeeeccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++| .+++|+|++++|++++.||.|++||+.+++....+ ..|.. .+.++.|.+.
T Consensus 52 ~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~---- 107 (372)
T 1k8k_C 52 NGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR------------------AARCVRWAPN---- 107 (372)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS------------------CEEEEEECTT----
T ss_pred CCcc--cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC------------------ceeEEEECCC----
Confidence 4677 55699999999999999999999999988765544 22333 3455666543
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-----------
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----------- 146 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~----------- 146 (579)
+.++++++.+|.|++||+..+. ....+..+|...|.+++|+|++++|++++.||.|++||+
T Consensus 108 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 108 -----EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp -----SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred -----CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 7889999999999999999876 344555778999999999999999999999999999995
Q ss_pred -------CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058 147 -------LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 147 -------~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 217 (579)
..++.+..+..|...|.+++|+|++++|++++ |.|++||+++++.+..+..|..+|.+++|+|++++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 46788888989999999999999999999988 899999999999999999999999999999999877665
Q ss_pred ecCCCeEEEEEcCC--Cccc---------------------------cceeE------Eee--ecCceeeEeE-EecCCc
Q 008058 218 AVGERYIALWRTDG--VKKQ---------------------------SASCV------LAM--EHPAVFMDCR-CIDNGG 259 (579)
Q Consensus 218 s~~d~~i~vwd~~~--~~~~---------------------------~~~~~------~~~--~~~~~~~~~~-~~~~~~ 259 (579)
.|+.|++|++.. ++.. ..... ..+ .|.. .+.++ +++
T Consensus 263 --~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~--- 336 (372)
T 1k8k_C 263 --HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLS--- 336 (372)
T ss_dssp --TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEE---
T ss_pred --eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEec---
Confidence 599999999987 3200 00000 111 3444 44555 455
Q ss_pred ccCCC---cEEEEEEcCCeEEEEECCCceee
Q 008058 260 VDDAG---LYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 260 ~~~~~---~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
++| .+|++++.||.|++||+++++.+
T Consensus 337 --~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 337 --GGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp --STTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred --CCCcceeeEEEecCCCceEEEEecChhHh
Confidence 677 99999999999999999877654
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.1e-29 Score=249.85 Aligned_cols=246 Identities=16% Similarity=0.192 Sum_probs=199.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|+|++|++|+.|+.|++|+...+........+........+.+.
T Consensus 86 ~~~V--~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 139 (340)
T 4aow_A 86 SHFV--SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD------------------------ 139 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec------------------------
Confidence 4678 55699999999999999999999999988877766544433332222222
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..+++|+.|+.+++||............+|...+..++|++++ .++++++.|+.|++||+.+++.+..+.+|..
T Consensus 140 ---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 140 ---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp ---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 67899999999999999988877666667899999999999865 5688999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc--
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-- 236 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~-- 236 (579)
.|++++|+|++++|++|+ |.|++||+++.+.+..+.. ...|.++.|+|++.++ +++ .|+.|++||++......
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAA-TGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEE-ETTEEEEEETTTTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-ecc-CCCEEEEEECCCCeEEEec
Confidence 999999999999999998 8999999999999988875 4689999999998655 455 49999999998765321
Q ss_pred --ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.........+...+.+++|+ |+|++|++|+.||.|+|||+.+|.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 00111222445566778887 999999999999999999999885
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=8.6e-31 Score=257.34 Aligned_cols=235 Identities=13% Similarity=0.100 Sum_probs=189.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~ 160 (579)
+++|++|+.|+.|++||+.++.. ....+.+|.++|++++|+| ++++|++|+.|++|++||++++ +....+.+|..
T Consensus 25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~ 104 (316)
T 3bg1_A 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS 104 (316)
T ss_dssp GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence 78899999999999999998753 2233468999999999986 4889999999999999999887 45667888999
Q ss_pred CeeEEEEccC--CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecC-----------------CCEEEE
Q 008058 161 GISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN-----------------GKYVLS 216 (579)
Q Consensus 161 ~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~-----------------~~~l~s 216 (579)
.|.+++|+|+ |.+|++|+ +.|++||++++.. ...+.+|...|.++.|+|+ +++|++
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 9999999998 88999998 8999999987632 3456789999999999997 367888
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC----cEEEEEEcCCeEEEEECCCceeecccCC
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
++ .|++|++||++..... .+...+..+...+..+.|+ |++ .+|++++.||+|++|++++...-
T Consensus 185 gs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D~~v~iw~~~~~~~~----- 251 (316)
T 3bg1_A 185 GG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQDGRVFIWTCDDASSN----- 251 (316)
T ss_dssp CB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETTCEEEEEECSSTTCC-----
T ss_pred ec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCCCeEEEEEccCcccc-----
Confidence 87 7999999999754311 1344555666777888888 775 89999999999999997653110
Q ss_pred ceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008058 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~ 372 (579)
... ...+..|...|.+++|+|||.+| ++++.|+
T Consensus 252 -------------~~~---------------------------------~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~ 284 (316)
T 3bg1_A 252 -------------TWS---------------------------------PKLLHKFNDVVWHVSWSITANIL-AVSGGDN 284 (316)
T ss_dssp -------------CCB---------------------------------CCEEEECSSCEEEEEECTTTCCE-EEEESSS
T ss_pred -------------chh---------------------------------hhhhhcCCCcEEEEEEcCCCCEE-EEEcCCC
Confidence 000 00123567789999999999999 9999999
Q ss_pred cccceeee
Q 008058 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
++++|+..
T Consensus 285 ~v~lw~~~ 292 (316)
T 3bg1_A 285 KVTLWKES 292 (316)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEC
Confidence 99999873
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.4e-30 Score=262.58 Aligned_cols=250 Identities=14% Similarity=0.117 Sum_probs=204.4
Q ss_pred CCcccceEEEEccC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccccccccccccccccccccccCccce
Q 008058 3 SSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTC 70 (579)
Q Consensus 3 ~~~V~~~~~~fs~d----g---~~las~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (579)
..+| .+++|+|+ | ++|++++.||.|++||+.+++. ...+..+.... ....+.+
T Consensus 62 ~~~v--~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~ 126 (397)
T 1sq9_A 62 KSGL--HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFWA 126 (397)
T ss_dssp TTCE--EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEEE
T ss_pred CCcE--EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEEE
Confidence 4677 56699999 9 9999999999999999988775 66665442000 0235667
Q ss_pred EEeeecc-cccccccCCcE-EEEEECCCeEEEEEccC------CeEEE-----Eec------CCCCCCEEEEEEccCCCE
Q 008058 71 MKWLSVD-RKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFATHGSC 131 (579)
Q Consensus 71 ~~w~~~~-~~~~~~~~~~~-l~~~~~~g~i~iwd~~~------~~~~~-----~~~------~~h~~~V~~l~~~~~~~~ 131 (579)
+.|.+.. ++ +.. +++++.+|.|++||+.+ ++.+. .+. ..|...|++++|+|++ +
T Consensus 127 ~~~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 127 LKWGASNDRL------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp EEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred EEEeeccCCC------CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 7777211 11 677 99999999999999998 65543 332 4588999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEeec---C---CCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeec---
Q 008058 132 IYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSG--- 197 (579)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~--- 197 (579)
+++++.||.|++||+++++.+..+.. | ...|.+++|+|++++|++++ |.|++||+++++.+..+.+
T Consensus 200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 99999999999999999999999998 8 89999999999999999986 4899999999999999998
Q ss_pred ----------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee------cC---------------
Q 008058 198 ----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------HP--------------- 246 (579)
Q Consensus 198 ----------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~------~~--------------- 246 (579)
|...|.+++|+|++++|++++ .|+.|++||+.+++.. ..+. .+
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee-----EEEecccCcccchhhhhcccccccccc
Confidence 999999999999999999988 7999999999987643 3344 33
Q ss_pred ceeeEeEEecCCcccCCC----------cEEEEEEcCCeEEEEECCCce
Q 008058 247 AVFMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~ 285 (579)
...+..+.|+ |++ .+|++++.||.|++|++++++
T Consensus 354 ~~~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 354 EPGVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SCCEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CCceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5667788887 887 799999999999999988763
No 87
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=4.3e-30 Score=255.01 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=204.3
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCc
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGM 140 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~ 140 (579)
.+++++|.+. +.+|++|+.||.|++||+.++. .... ..+|...|++++|+| ++++|++++.||.
T Consensus 13 ~v~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 13 LVHDVVYDFY---------GRHVATCSSDQHIKVFKLDKDTSNWELSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEEEEEECSS---------SSEEEEEETTSEEEEEEECSSSCCEEEEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ceeEEEEcCC---------CCEEEEeeCCCeEEEEECCCCCCcceecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 5666777653 7889999999999999999763 3333 367999999999999 6999999999999
Q ss_pred EEEEeCCCC---------ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEee-----------
Q 008058 141 VCEIDPLTG---------SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS----------- 196 (579)
Q Consensus 141 v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~~~~~~----------- 196 (579)
|++||+.++ +.+..+..|...|.+++|+|+ ++++++++ |.|++||+++++.+..+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999877 557788889999999999999 99999987 899999999876544332
Q ss_pred --cCCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC----cEE
Q 008058 197 --GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYV 267 (579)
Q Consensus 197 --~h~~~v~~l~~~~~---~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l 267 (579)
+|...+.++.|+|+ +.++++++ .|+.+.+|+...++.. ....+..+...+.++.|+ |++ .+|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~~~~~l 233 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGRWYQLI 233 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSCSSEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCCcceEE
Confidence 68889999999997 88999887 6999988887766532 345566666778888888 887 899
Q ss_pred EEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec
Q 008058 268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347 (579)
Q Consensus 268 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (579)
++++.||.|++||+.++................. .+.... ....+..++. .......+..........+.+
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD-NSADVD----MDAQGRSDSN----TEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp EEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEEEEECT
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccC-CCcccc----cccccccccc----cceeeeecccccccEEEEEec
Confidence 9999999999999987644332221111111000 011111 1112211110 000111111122245556778
Q ss_pred CCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 348 h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus 305 h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 305 HNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKAT 336 (351)
T ss_dssp TSSCEEEEEECSSSCCE-EEEETTSCEEEEEEC
T ss_pred ccccEEEEEEcCCCCEE-EEecCCCcEEEEecC
Confidence 99999999999999999 999999999999985
No 88
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-31 Score=287.88 Aligned_cols=251 Identities=16% Similarity=0.199 Sum_probs=204.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.++| .+++|+|+|++|++|+.||+|+|||+. ++.....+.+|...+. ++.|.+..
T Consensus 8 H~~~V--~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~------------------~l~~s~~~-- 65 (753)
T 3jro_A 8 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW------------------RVDWAHPK-- 65 (753)
T ss_dssp CCCCE--EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE------------------EEEECCTT--
T ss_pred Cccee--EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE------------------EEEecCCC--
Confidence 46788 555999999999999999999999998 4566667766655444 45554321
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~ 153 (579)
++.++++|+.||.|++||+.+++ .+..+ .+|...|++++|+|+ ++.+++|+.||.|++||+.++. ...
T Consensus 66 -----~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 66 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp -----SCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred -----CCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 16789999999999999999987 44343 679999999999999 9999999999999999998773 445
Q ss_pred EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCC----eeeEEeecCCCCEEEEEEecC---C
Q 008058 154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---G 211 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--g~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~---~ 211 (579)
.+.+|...|.+++|+| +++++++|+ |.|++||++++ .....+.+|..+|++++|+|+ +
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 6778999999999999 588899887 89999999876 566788899999999999999 8
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
+++++++ .||.|++||+..+.............+...+..+.|+ |+|.+|++++.||.|++|++.++..
T Consensus 220 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 220 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSC
T ss_pred CEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCC
Confidence 8999988 7999999999987532111222333455567778887 9999999999999999999986543
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.6e-29 Score=262.29 Aligned_cols=243 Identities=15% Similarity=0.220 Sum_probs=204.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++ +|++|+.||+|++||+.++++...+.+|...+. ++.|.+..
T Consensus 161 h~~~V--~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~l~~~~~~---- 215 (464)
T 3v7d_B 161 HDGGV--WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR------------------CLDIVEYK---- 215 (464)
T ss_dssp CSSCE--EEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEEESS----
T ss_pred CCcCE--EEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccE------------------EEEEecCC----
Confidence 45778 566999998 999999999999999999999988876655444 45554321
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEE----------------------EEecCCCCCCEEEEEEccCCCEEEEEeCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADG 139 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg 139 (579)
++.++++|+.||.|++||+.++... .....+|...|.++ +++++++++++.||
T Consensus 216 ---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~ 290 (464)
T 3v7d_B 216 ---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN 290 (464)
T ss_dssp ---SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred ---CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence 1678999999999999999876532 23346788889887 56889999999999
Q ss_pred cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 217 (579)
.|++||+.+++.+..+.+|...|.+++|+|+++++++|+ |.|++||+++++.+.++.+|...|.++.|+ +.+++++
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 999999999999999999999999999999999999998 899999999999999999999999999997 5789988
Q ss_pred ecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
+ .||.|++||+.+.... ... ++.......+++ +++.++++++ ||.|++||+++++.+..
T Consensus 369 s-~dg~v~vwd~~~~~~~-----~~~-~~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 369 A-ADGSIRGWDANDYSRK-----FSY-HHTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp E-TTSEEEEEETTTCCEE-----EEE-ECTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred e-CCCcEEEEECCCCcee-----eee-cCCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 8 7999999999986532 333 334445566676 8999999988 89999999999998865
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.3e-31 Score=273.68 Aligned_cols=253 Identities=8% Similarity=0.086 Sum_probs=190.8
Q ss_pred CcccceEEEEccC------CCEEEEEeCCCcEEEEECCCCeEEE--EeccccccccccccccccccccccCccceEEeee
Q 008058 4 SNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 4 ~~V~~~~~~fs~d------g~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++| ..++|+|+ +.+||+|+.||+|+|||+.++.... .+. ...+. .. ..+| ...+++++|.+
T Consensus 208 ~~V--~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~p~--~~-----l~~h-~~~v~sv~~s~ 276 (524)
T 2j04_B 208 GEV--WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEKPS--LT-----LSLA-DSLITTFDFLS 276 (524)
T ss_dssp CSE--EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCSCS--EE-----ECCT-TTCEEEEEESS
T ss_pred CcE--EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecCce--EE-----EEcC-CCCEEEEEecC
Confidence 567 45599997 5799999999999999998664210 000 00000 00 1123 24577888875
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEE--EEccCC-CEEEEEeCCCcEEEEeCCCCcee
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~ 152 (579)
+..|++|+.||.|++||+.++........+|...|+++ .|+|+| ++|++|+.|++|++||++++++.
T Consensus 277 ----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 277 ----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp ----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred ----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 34699999999999999998754333346899999999 578887 89999999999999999998888
Q ss_pred eEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 153 GKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 153 ~~~~~~~~--~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
.++.+|.. .|.+++|+|+++.+++++ ++|++||++++.++.++.+|.+.|++++|+|++++|++++ .|++|++||
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lwd 425 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIITN 425 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECCB
T ss_pred cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEEe
Confidence 77777654 588999999999999887 7999999999998889999999999999999999999988 799999999
Q ss_pred cCCCcccc---------------------------------------ceeEEeeecCceeeEeEEecCCcccCCC---cE
Q 008058 229 TDGVKKQS---------------------------------------ASCVLAMEHPAVFMDCRCIDNGGVDDAG---LY 266 (579)
Q Consensus 229 ~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 266 (579)
+....... ..+...+..+...+.+++|+ |++ ..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs-----p~~~~~~~ 500 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN-----ETSAGGKC 500 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC-----CSTTTTTE
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC-----CCCCccHH
Confidence 75431110 00111122233445667777 774 59
Q ss_pred EEEEEcCCeEEEEECCC
Q 008058 267 VLAISETGVCYIWYGQN 283 (579)
Q Consensus 267 l~s~~~dg~i~iwd~~~ 283 (579)
+++|+.||.|+||+++-
T Consensus 501 lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECTTSEEEEEECSC
T ss_pred HHhhccCceEEEEEccc
Confidence 99999999999999754
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-31 Score=271.98 Aligned_cols=297 Identities=12% Similarity=0.094 Sum_probs=221.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
.|+|+++.+++++ .|+ .+++.+..+ .+|...+. +++|.+.+ +.+|+
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~------------------~~~~s~~~--------~~~l~ 80 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSIT------------------SSAVSPGE--------TPYLI 80 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEE------------------EEEEECSS--------SCEEE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceE------------------EEEECCCC--------CCEEE
Confidence 5788998888765 488 457888877 66555555 44444411 78899
Q ss_pred EEECCCeEEEEEccC---CeEEE-EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEeec------
Q 008058 91 LGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA------ 157 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~---~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~------ 157 (579)
+|+.||.|++||+.+ +.... ....+|...|++++|+|++++|++++.||+|++||+. +++....+..
T Consensus 81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 999999999999987 43211 1112589999999999999999999999999999994 5555444332
Q ss_pred ------CCCCeeEEE--EccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 158 ------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 158 ------~~~~v~~l~--~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
+...+.++. ++|++.++++++ |.|++||+++++.+..+.+ |...|++++|+|++++|++++ .|+.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~ 239 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIID 239 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEE
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEE
Confidence 344666666 567899999998 8999999999999999988 899999999999999999998 799999
Q ss_pred EEEcCCCccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCc
Q 008058 226 LWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (579)
+||++.++.. ..+. .+...+..+.+.+ .++|++.+|++++.||.|++||+.+++.+.........+.... ++
T Consensus 240 iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~ 312 (437)
T 3gre_A 240 IWDIRFNVLI-----RSWSFGDHAPITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-FL 312 (437)
T ss_dssp EEETTTTEEE-----EEEBCTTCEEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG-GS
T ss_pred EEEcCCccEE-----EEEecCCCCceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce-ec
Confidence 9999986533 3332 3334566665542 1237889999999999999999999887765543322222111 23
Q ss_pred ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec--CCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
++++ .+... .+.+ |...|.+++|+ ++.+| ++++.|+.+++|++.+
T Consensus 313 ~~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 313 PIEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNE 359 (437)
T ss_dssp CBCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTC
T ss_pred cccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCC
Confidence 3322 11000 1234 88899999999 88999 9999999999999853
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=257.49 Aligned_cols=250 Identities=11% Similarity=0.143 Sum_probs=198.8
Q ss_pred CCcccceEEEEccC---CCEEEEEeCCCcEEEEECCCCe-EEEEeccccccccccccccccccccccCccceEEeee---
Q 008058 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS--- 75 (579)
Q Consensus 3 ~~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~--- 75 (579)
..+| .+++|+|+ |++|++|+.||.|++||+.+++ ....+..|...+. ++.|.+
T Consensus 65 ~~~v--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~------------------~~~~~~~~~ 124 (357)
T 3i2n_A 65 AKPI--KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN------------------AIDGIGGLG 124 (357)
T ss_dssp SSCE--EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE------------------EEEEESGGG
T ss_pred cCcE--EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE------------------EEeeccccc
Confidence 4578 56699999 7999999999999999999887 7777776655444 444432
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCC----CCEEEEE----EccCCCEEEEEeCCCcEEEEeC
Q 008058 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~----~~V~~l~----~~~~~~~l~s~~~dg~v~iwd~ 146 (579)
.+++ +..+++++.||.|++||+.+++ .+..+ ..|. ..|.++. |+|+++++++++.||.|++||+
T Consensus 125 ~s~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 125 IGEG------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp CC-C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred cCCC------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 1222 7789999999999999999887 44444 3333 3899998 7889999999999999999999
Q ss_pred CCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCCCeeeEEee-----cCCCCEEEEEEecCCC-EEE
Q 008058 147 LTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVL 215 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--g~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~-~l~ 215 (579)
++++.... ..|...|.+++|+| ++.++++++ |.|++||+++++.+..+. +|...|++++|+|+++ +++
T Consensus 198 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 198 RNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp TTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 98887544 55888999999999 899999988 899999999877655554 8999999999999998 677
Q ss_pred EEecCCCeEEEEEcCCCcccc--------------ceeEEeeecCceeeEeEEecCCcccCCCcEEE-EEEcCCeEEEEE
Q 008058 216 SSAVGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWY 280 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~iwd 280 (579)
+++ .|+.|++||++.+.... ...+..+..+...+..+.|+ |++.+|+ +++.||.|++||
T Consensus 277 ~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 277 TAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred EEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEE
Confidence 776 79999999998654321 12455566667778888888 9999998 799999999999
Q ss_pred CCCcee
Q 008058 281 GQNIEE 286 (579)
Q Consensus 281 ~~~~~~ 286 (579)
+.+.+.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987654
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=260.99 Aligned_cols=256 Identities=14% Similarity=0.043 Sum_probs=196.6
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccc----------cc------------
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYG----------NR------------ 58 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~----------~~------------ 58 (579)
.|+. +++|+|||++|++++ ++.|++||+.+|+ .+..+..+........+. ..
T Consensus 5 ~p~~--~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQ--NLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCC--EEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEE--EEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 5784 449999999776664 7899999999998 776666443210000000 00
Q ss_pred ----------cccc----cccCccceEEeeecccccccccCCcEE-EEEECCCeEEEEEcc--CCeEEEEec-CCCCCCE
Q 008058 59 ----------LERE----HLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVLALAVS--AGQLKWRLS-DCHPGGV 120 (579)
Q Consensus 59 ----------~~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~i~iwd~~--~~~~~~~~~-~~h~~~V 120 (579)
...+ .....+.+++|.+. +.+| ++|+.||.|++||+. +++.+..+. ..|...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp ------------------CCCCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 0000 01225778888775 5564 888899999999999 777765553 2577899
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCceee----EeecCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee
Q 008058 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK 191 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~---g~~l~~~~--g~i~vwd~~~~~~ 191 (579)
++++|+|++++|++++.||.|++|++.+++... .+.+|...|++++|+|+ +++|++|+ +.|++||+++++.
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 999999999999999999999999998877554 78889999999999999 99999998 8999999999988
Q ss_pred eEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-----------------------cCc
Q 008058 192 MQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HPA 247 (579)
Q Consensus 192 ~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~ 247 (579)
+.. +.+|...|.+++|+ ++++|++++ .|+.|++||+.+++.. ..+... ...
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccce
Confidence 877 56899999999999 999999998 7999999999988643 111111 112
Q ss_pred eeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEEC
Q 008058 248 VFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG 281 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~ 281 (579)
..+..+.+. |++.+|++++ .|+.|++|++
T Consensus 308 ~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 308 FAVSKIIKS-----KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence 345666776 8999999999 8999999997
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=251.75 Aligned_cols=235 Identities=14% Similarity=0.080 Sum_probs=184.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
..+.+++.+|++|+.||+|++||+.+++.+..+. ...+..+.+++ . ++
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-----------------------------~-~~ 89 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-----------------------------A-II 89 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-----------------------------S-EE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-----------------------------c-eE
Confidence 3456788999999999999999999998887765 22222222221 2 78
Q ss_pred EEECCCeEEEEEcc---------CCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeec-C
Q 008058 91 LGTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-S 158 (579)
Q Consensus 91 ~~~~~g~i~iwd~~---------~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~ 158 (579)
+++.|+.|++|+.. +++.+.....+|.++|.+++|+| +++++++++.||+|++||+++++.+..+.. +
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 169 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS 169 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence 88888888888654 56655555567888999999999 999999999999999999999988776644 4
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-EEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~-~~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
...+.+++|+|+|.++++|+ |.|++||+++++.+ ..+.+ |.++|++++|+|++.+|++++ |+.|++||++..+.
T Consensus 170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVG 247 (343)
T ss_dssp SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCc
Confidence 45899999999999999988 99999999999887 78888 999999999999999999987 44999999998764
Q ss_pred ccceeEEeeecCceee--EeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCcee
Q 008058 235 QSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEE 286 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~ 286 (579)
.. .+..+..+...+ .+++|+ |+|++|++++. |+.+++|++.....
T Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 248 TL--AYPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp CB--SSCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ce--eecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEccccc
Confidence 31 111111111222 357787 99999999998 99999999866543
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=254.17 Aligned_cols=236 Identities=14% Similarity=0.158 Sum_probs=194.9
Q ss_pred CcEEEEEECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058 86 SSLLVLGTGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+.+|++|+.||.|++||+. +++.+..+ .+|...|++++|+|+ +++|++++.||.|++||+.+++ .+..+..|.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 101 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence 7889999999999999998 44455444 689999999999977 9999999999999999999887 777788899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008058 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG 220 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~-------------~~~~l~s~s~~ 220 (579)
..|.+++|+|+ ++++++++ +.|++||++++. ....+.+|...|.+++|+| ++.++++++ .
T Consensus 102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 180 (379)
T 3jrp_A 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 180 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-T
T ss_pred cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-C
Confidence 99999999999 99999988 899999999873 3456778999999999999 689999988 7
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC---CcEEEEEEcCCeEEEEECCCceeecccCCceEEe
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
|+.|++||++.+... ......+..+...+.++.|+ |+ +.+|++++.||.|++||+.++..... ...
T Consensus 181 dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~ 249 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK-----KTL 249 (379)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCCE-----EEE
T ss_pred CCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEEC-----CCCCCCCeEEEEeCCCEEEEEeCCCCCccce-----eee
Confidence 999999999876533 22344555666777888888 88 89999999999999999876532100 000
Q ss_pred eecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
. ....|...+.+++|+|||.+| ++++.|+.+++|
T Consensus 250 ~---------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw 283 (379)
T 3jrp_A 250 L---------------------------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 283 (379)
T ss_dssp S---------------------------------------------SSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEE
T ss_pred e---------------------------------------------ccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEE
Confidence 0 011366689999999999999 999999999999
Q ss_pred eee
Q 008058 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
++.
T Consensus 284 ~~~ 286 (379)
T 3jrp_A 284 KEN 286 (379)
T ss_dssp EEE
T ss_pred eCC
Confidence 985
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.2e-29 Score=253.48 Aligned_cols=243 Identities=16% Similarity=0.268 Sum_probs=202.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .+++|+|||++||+|+.||+|+|||+.+++++..+.+|...+ .++.|.
T Consensus 148 ~~V--~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v------------------~~~s~~--------- 198 (420)
T 4gga_A 148 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV------------------GSLSWN--------- 198 (420)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------------EEEEEE---------
T ss_pred CcE--EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce------------------EEEeeC---------
Confidence 457 566999999999999999999999999999999887665433 234442
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST 159 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~ 159 (579)
+..+++|+.++.+++||............+|...+..+.|+|+++++++++.|+.+++||..+++ .+.....|.
T Consensus 199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred --CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 67899999999999999988665545557899999999999999999999999999999998765 355677788
Q ss_pred CCeeEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008058 160 KGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (579)
Q Consensus 160 ~~v~~l~~~p~g~-~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~~d~~i~vwd~~~~~ 233 (579)
..|.+++|+|++. ++++++ +.|++||+.+++++..+..| ..+.++.|+|+++.+++++ ..|+.|++||+.+++
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999999665 555442 79999999999999888755 5788999999999888764 358999999999876
Q ss_pred cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
++..+..|...+.+++|+ |+|.+|++|+.||+|+|||+......+
T Consensus 356 -----~v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 356 -----KVAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp -----EEEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred -----EEEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCccc
Confidence 345666667778888898 999999999999999999987665443
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-29 Score=248.50 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=205.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|++++|++++.||.|++||+.++++...+. +... +.++.|.+.
T Consensus 74 ~~~v--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~------------------v~~~~~~~~------ 126 (369)
T 3zwl_B 74 TGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP------------------VKRVEFSPC------ 126 (369)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC------------------EEEEEECTT------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC------------------eEEEEEccC------
Confidence 5678 566999999999999999999999999999888776 3333 345555443
Q ss_pred ccCCcEEEEEECC-----CeEEEEEccCCeE-----------EEEecCCCCC--CEEEEEEccCCCEEEEEeCCCcEEEE
Q 008058 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEI 144 (579)
Q Consensus 83 ~~~~~~l~~~~~~-----g~i~iwd~~~~~~-----------~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~dg~v~iw 144 (579)
+..+++++.+ |.|.+||+..+.. ...+ ..|.. .+.+++|+|+++++++++.||.|++|
T Consensus 127 ---~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 127 ---GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ---SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ---CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 7889999998 9999999986532 1111 24555 89999999999999999999999999
Q ss_pred eCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 145 DPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 145 d~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
|+.+ ++.+..+..|...|.+++|+|++++|++++ |.|++||+++++.+..+. +...+..+.|+|+++++++++ .+
T Consensus 203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~ 280 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-GQ 280 (369)
T ss_dssp ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CC
T ss_pred ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-cC
Confidence 9998 788888999999999999999999999987 899999999999988887 788999999999999999988 56
Q ss_pred C--------------eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 222 R--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 222 ~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
+ .+++||...++.. ..+..+...+..+.|+ |++++|++++.||.|++|+++++...
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp C-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred CCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccch
Confidence 6 8999999887633 4555566677888888 99999999999999999999876544
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.9e-30 Score=260.20 Aligned_cols=196 Identities=11% Similarity=0.157 Sum_probs=153.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .+++|+|+|++|++|+.||+|+|||+.++. ....+..|...+. ++.|.+.
T Consensus 55 ~~~v--~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~------------------~~~~~~~--- 111 (377)
T 3dwl_C 55 DKIV--TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT------------------FVRWSPN--- 111 (377)
T ss_dssp SSCE--EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE------------------EEECCTT---
T ss_pred CceE--EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE------------------EEEECCC---
Confidence 5678 566999999999999999999999999877 4555555554444 4555442
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---------
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------- 147 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~--------- 147 (579)
+..|++++.||.|++||+.+++. ...+...|...|++++|+|++++|++++.|+.|++||+.
T Consensus 112 ------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 112 ------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred ------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 77899999999999999998873 445544499999999999999999999999999999985
Q ss_pred ---------CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCC
Q 008058 148 ---------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 148 ---------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~ 212 (579)
.++.+..+ +|...|.+++|+|+|++|++++ |.|++||+++++. +..+.+|..+|.+++|+|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA 264 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC
Confidence 34566667 8899999999999999999988 8999999999887 788899999999999999999
Q ss_pred EEEEEecCCCeEEEEEcC
Q 008058 213 YVLSSAVGERYIALWRTD 230 (579)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~ 230 (579)
+|++++ .|+ +.+|+..
T Consensus 265 ~l~~~~-~~~-~~~~~~~ 280 (377)
T 3dwl_C 265 IVAAGY-NYS-PILLQGN 280 (377)
T ss_dssp EEEEES-SSS-EEEECCC
T ss_pred EEEEEc-CCc-EEEEEeC
Confidence 888775 455 5577765
No 99
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.4e-29 Score=253.01 Aligned_cols=240 Identities=16% Similarity=0.179 Sum_probs=188.4
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| ++++|++++.||.|++||+.+ .....+..+.. ....+.+++|.+.
T Consensus 117 h~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~---------------~~~~v~~~~~~~~---- 174 (383)
T 3ei3_B 117 PGDAI--TGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDS---------------WDYWYCCVDVSVS---- 174 (383)
T ss_dssp TTCBE--EEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCC---------------SSCCEEEEEEETT----
T ss_pred cCCce--eEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCC---------------CCCCeEEEEECCC----
Confidence 34678 5669999 789999999999999999985 44554543221 1234567777654
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC----CceeeEe
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKF 155 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~----~~~~~~~ 155 (579)
+.++++|+.+|.|++||+ +++.+..+ .+|...|.+++|+|+++ ++++++.|+.|++||+++ +..+..+
T Consensus 175 -----~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 175 -----RQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp -----TTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred -----CCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 788999999999999999 46666555 57999999999999999 899999999999999987 5666666
Q ss_pred ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----------------CCEEEEEEecCCCEEE
Q 008058 156 RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVL 215 (579)
Q Consensus 156 ~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----------------~~v~~l~~~~~~~~l~ 215 (579)
+|...|.+++|+| ++++|++++ +.|++||+++++....+.+|. ..+..++|+|++++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-- 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-- 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence 5899999999999 999999988 899999999988877776553 23444666666665
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
+++ .|+.|++||+.+++.. ..+...++...+.++.|+ |++.+|++++ ||.|++||+++
T Consensus 325 s~s-~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLN-DKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTT-CCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred ccC-CCCeEEEEecCCCcee---eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence 444 7999999999987643 222222345667777888 9999999997 99999999864
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.8e-28 Score=243.47 Aligned_cols=291 Identities=9% Similarity=-0.009 Sum_probs=206.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|||++||+|+.|| ++|||..++........+ ....+.|.+..
T Consensus 19 ~~~V--~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----- 70 (355)
T 3vu4_A 19 SNPV--TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT----- 70 (355)
T ss_dssp CCCC--CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS-----
T ss_pred CCce--EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC-----
Confidence 4678 5569999999999998775 789999887765543211 12334444321
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
+.++++++.++.|++||..+++.+..+. |...|.++.|+++. ++.+ .|+.|++||+.++ +.+..+.. +
T Consensus 71 ---~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 71 ---NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp ---SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred ---CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 3334667788999999999999887763 67799999998764 4444 4889999999988 77777665 4
Q ss_pred eeEEEEccCCCEEEEE--C--CeEEEEECCCCe----------------eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 162 ISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~--~--g~i~vwd~~~~~----------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
...+++++ .+++++ + |.|++||+++++ .+..+.+|.++|++++|+|+|++|++++ .|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QD 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CC
Confidence 45566777 566664 4 899999999865 2778899999999999999999999998 79
Q ss_pred Ce-EEEEEcCCCccccceeEEeee-c-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc--cCCceEE
Q 008058 222 RY-IALWRTDGVKKQSASCVLAME-H-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKIL 296 (579)
Q Consensus 222 ~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~ 296 (579)
++ |++||+++++.. ..+. . +...+..+.|+ |+|++|++++.||+|++||++....... ....
T Consensus 217 ~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~--- 283 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW--- 283 (355)
T ss_dssp CSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT---
T ss_pred CCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCcccccccce---
Confidence 98 999999987643 4454 2 55677888888 9999999999999999999976532111 0000
Q ss_pred eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccc
Q 008058 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (579)
. .+ ..++. . +. ...+.-...+......++|++||.++ ++++.|+.+++
T Consensus 284 ~------~~-----------~~~~~-~--~~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~~ 331 (355)
T 3vu4_A 284 I------NM-----------KYFQS-E--WS-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIET 331 (355)
T ss_dssp E------EC-----------CCCCC-S--SC-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEEE
T ss_pred e------ec-----------ccccc-c--cc-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEEE
Confidence 0 00 00000 0 00 00000001122245779999999999 88888999999
Q ss_pred eeee
Q 008058 377 RYVQ 380 (579)
Q Consensus 377 w~~~ 380 (579)
|++.
T Consensus 332 ~~~~ 335 (355)
T 3vu4_A 332 FKVV 335 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.8e-28 Score=251.62 Aligned_cols=262 Identities=16% Similarity=0.252 Sum_probs=212.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+ ++++++|+.||+|++||+.+++....+.+|...+. ++.|.
T Consensus 158 h~~~v--~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~------- 208 (445)
T 2ovr_B 158 HTGGV--WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR------------------CMHLH------- 208 (445)
T ss_dssp CSSCE--EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE-------
T ss_pred CCCCE--EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE------------------EEEec-------
Confidence 34677 555886 67999999999999999999999988876654433 44442
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+..+++|+.||.|++||+.+++.+..+ .+|...|.++.| +++++++++.||.|++||+.+++.+..+.+|...
T Consensus 209 ----~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 209 ----EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281 (445)
T ss_dssp ----TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence 567999999999999999999988666 579999999999 7889999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
|.+++| ++.++++++ |.|++||+++++.+..+.+|...+.++.++ ++++++++ .||.|++||+++++..
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~---- 352 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL---- 352 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE----
Confidence 999999 788899887 899999999999999999999999988875 56888887 7999999999887633
Q ss_pred EEeeec---CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc-----CCceEEeeecccCcccccccc
Q 008058 240 VLAMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-----KATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 311 (579)
..+.. +...+.++.+ ++.+|++++.||.|++||+.+++.+... .+....+.+.. +++++.
T Consensus 353 -~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~--- 420 (445)
T 2ovr_B 353 -QTLQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL--- 420 (445)
T ss_dssp -EEECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE---
T ss_pred -EEEccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEE---
Confidence 33332 4445566666 4589999999999999999999877655 12222333222 456655
Q ss_pred hhhhhccccc
Q 008058 312 AAIFAAKLQD 321 (579)
Q Consensus 312 ~~i~~~~~~~ 321 (579)
.+++++.||
T Consensus 421 -~la~~~~dg 429 (445)
T 2ovr_B 421 -VCAVGSRNG 429 (445)
T ss_dssp -EEEEECSSS
T ss_pred -EEEEcccCC
Confidence 677777765
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.9e-29 Score=256.65 Aligned_cols=248 Identities=13% Similarity=0.193 Sum_probs=197.5
Q ss_pred CCcccceEEEEccC-CCEEEEEeCCCcEEEEECCC----------CeEEEEeccccccccccccccccccccccCccceE
Q 008058 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++| .+++|+|+ +.+||+++.||.|+||++.+ ......+..|.. .+.++
T Consensus 128 ~~~v--~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l 187 (430)
T 2xyi_A 128 EGEV--NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------------EGYGL 187 (430)
T ss_dssp SSCC--SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS------------------CCCCE
T ss_pred CCcE--EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC------------------CeEEE
Confidence 4678 45599997 68999999999999999976 344444444433 34566
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCCeE----E--EEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 008058 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----K--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEI 144 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~----~--~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iw 144 (579)
.|.+.. ..+|++|+.+|.|++||+.++.. + .....+|...|.+++|+| ++..|++++.||.|++|
T Consensus 188 ~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 188 SWNPNL--------NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp EECTTS--------TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EeCCCC--------CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 666542 33899999999999999987322 1 123357999999999999 67889999999999999
Q ss_pred eCCCC---ceeeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCC-EEEE
Q 008058 145 DPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YVLS 216 (579)
Q Consensus 145 d~~~~---~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~-~l~s 216 (579)
|++++ +.+..+..|...|++++|+|+++ ++++|+ |.|++||+++ ++.+..+.+|...|.+++|+|+++ +|++
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 99987 57778888999999999999987 577776 9999999998 567889999999999999999996 5666
Q ss_pred EecCCCeEEEEEcCCCcccc---------ceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCc
Q 008058 217 SAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~ 284 (579)
++ .|+.|++||+....... ...+.....+...+..+.|+ |++. +|++++.||.|++|++...
T Consensus 340 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred Ee-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence 66 79999999998732110 12445555566667788887 8888 8999999999999998654
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-28 Score=237.81 Aligned_cols=237 Identities=13% Similarity=0.209 Sum_probs=194.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .+++|+|++++|++|+.||.|++|++... +....+..|.. .+.++.|.
T Consensus 59 ~~~v--~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------------~i~~~~~~----- 113 (313)
T 3odt_A 59 QGFL--NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------------NVCSLSFQ----- 113 (313)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------------CEEEEEEE-----
T ss_pred CccE--EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------------CEEEEEec-----
Confidence 4677 55699999999999999999999998654 33444443333 34455551
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-
Q 008058 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~- 157 (579)
+..+++++.+|.|++|| .++....+ ..|...|.++.|+| +++++++++.||.|++|| .++....+..
T Consensus 114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 67899999999999999 55655455 57999999999998 999999999999999999 5667777777
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|...+.+++|+|++. +++++ |.|++||+++++.+..+.+|..+|++++|+|++ .+++++ .|+.|++||+.+++..
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK 259 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence 888999999999999 55555 899999999999999999999999999999999 577777 7999999999987633
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
..+..+...+..+.|+ |+++ +++++.||.|++||+++++.+..
T Consensus 260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 4455566677788887 8888 66799999999999988876543
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.5e-29 Score=252.74 Aligned_cols=247 Identities=14% Similarity=0.208 Sum_probs=199.0
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccccccccccccccccccccccCccceEEe
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
+.++| .+++|+| ++++|++|+.||+|+|||+.++ +....+.+|.. .+.+++|
T Consensus 80 h~~~V--~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~ 139 (402)
T 2aq5_A 80 HTAPV--LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK------------------RVGIVAW 139 (402)
T ss_dssp CSSCE--EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS------------------CEEEEEE
T ss_pred CCCCE--EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC------------------eEEEEEE
Confidence 35678 5669999 9999999999999999999987 44555554444 3455666
Q ss_pred eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008058 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 152 (579)
.+.. ..++++++.||.|++||+.+++.+..+. .+|...|++++|+|++++|++++.||.|++||+++++.+
T Consensus 140 ~p~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 140 HPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp CSSB--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred CcCC--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 5542 3689999999999999999999887764 679999999999999999999999999999999999999
Q ss_pred eEe-ecCCCC-eeEEEEccCCCEEEEE---C--CeEEEEECCCCee-eEEee-cCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058 153 GKF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 153 ~~~-~~~~~~-v~~l~~~p~g~~l~~~---~--g~i~vwd~~~~~~-~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~ 223 (579)
..+ ..|.+. +.+++|+|+++++++| + +.|++||+++++. +.... .|...+.+++|+|+++++++++..|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 988 678775 8999999999999998 4 8999999998654 33332 577889999999999999877657999
Q ss_pred EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
|++|++.+++.. ...+.... +...+..+.|+ |++.++++ .++.+++|++.++.
T Consensus 292 i~i~d~~~~~~~-~~~l~~~~-~~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 292 IRYFEITSEAPF-LHYLSMFS-SKESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEECSSTTC-EEEEEEEC-CSSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEEecCCCcc-eEeecccc-cCCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence 999999987631 01222222 34556777787 89888764 56799999988754
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=2.6e-27 Score=232.28 Aligned_cols=240 Identities=14% Similarity=0.214 Sum_probs=196.9
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .+++|+|+|++||+|+.||+|++||+.+++++..+.+|...+.. +...
T Consensus 68 ~~V--~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~--------------------~~~~------- 118 (318)
T 4ggc_A 68 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS--------------------LSWN------- 118 (318)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE--------------------EEEE-------
T ss_pred CeE--EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE--------------------eecC-------
Confidence 457 56699999999999999999999999999999888766543221 1111
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAST 159 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~ 159 (579)
+..+++++.++.+++|+...+........+|...+..+.|+++++++++++.||+|++||+.+++. ......+.
T Consensus 119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 678999999999999999987665555578999999999999999999999999999999987753 34455677
Q ss_pred CCeeEEEEccCCCEEE---EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008058 160 KGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~---~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~~d~~i~vwd~~~~~ 233 (579)
+.|.+++++|++..++ +++ +.|++||.+........ .+...+..+.|+|++..+++++ ..|+.|++||+++++
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 8999999999766443 333 79999999988776655 4778899999999999887754 368999999999876
Q ss_pred cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
. +..+..|...+.++.|+ |+|.+|++|+.||+|+|||+...+
T Consensus 276 ~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCCC
T ss_pred E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCC
Confidence 3 45666667778888898 999999999999999999986543
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=9e-29 Score=254.40 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=184.1
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| ++++|++|+.||+|+|||+.++........+. ....+.++.|.+.
T Consensus 163 H~~~V--~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---- 220 (435)
T 4e54_B 163 AGGSI--TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT----------------INIWFCSLDVSAS---- 220 (435)
T ss_dssp SSCCC--CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS----------------CSCCCCCEEEETT----
T ss_pred CCCCE--EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC----------------CCccEEEEEECCC----
Confidence 35788 5559998 78999999999999999998665443322111 1123345555543
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeE---ee
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGK---FR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~---~~ 156 (579)
+.+|++|+.+|.|++||+.... +.. +.+|...|++++|+|+++ ++++++.|++|++||+++++.... ..
T Consensus 221 -----~~~l~~g~~dg~i~~wd~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 221 -----SRMVVTGDNVGNVILLNMDGKE-LWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp -----TTEEEEECSSSBEEEEESSSCB-CCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred -----CCEEEEEeCCCcEeeeccCcce-eEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 7889999999999999987543 333 368999999999999886 688999999999999988765443 35
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC------EEEEEEecCCCEEEEEec---------
Q 008058 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA------VRFMTFSDNGKYVLSSAV--------- 219 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~------v~~l~~~~~~~~l~s~s~--------- 219 (579)
+|...|++++|+|+|++|++++ |.|++||+.+++....+..|... +....|+|++..+++++.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 6888999999999999999998 89999999999888777666532 334567777777666543
Q ss_pred --CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 220 --GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 220 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
.++.|++||..+++.. ......|...+..+..|+ |+|.+|++|+ |++|+|||+++++.
T Consensus 374 ~~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TTCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred ecCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence 3467999999988643 222223444455555787 9999998876 88999999988764
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.8e-28 Score=249.24 Aligned_cols=254 Identities=13% Similarity=0.137 Sum_probs=199.3
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC----------CeEEEEecCCCCCCEEEEEEccCCC-EEEE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIYS 134 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----------~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s 134 (579)
..+++++|.+.+ +.++++++.+|.|++||+.+ ......+ .+|...|++++|+|++. +|++
T Consensus 129 ~~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 129 GEVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp SCCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred CcEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence 467788888753 56899999999999999987 3444444 57999999999999988 9999
Q ss_pred EeCCCcEEEEeCCCCce-------eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC---eeeEEeecCCCC
Q 008058 135 AGADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (579)
Q Consensus 135 ~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~ 201 (579)
|+.||.|++||+.++.. ...+.+|...|.+++|+| ++.++++++ |.|++||++++ +.+..+..|...
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 99999999999987432 456778999999999999 677888886 99999999987 577788899999
Q ss_pred EEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEE
Q 008058 202 VRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIW 279 (579)
Q Consensus 202 v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iw 279 (579)
|++++|+|+++ .+++++ .|+.|++||++.... .+..+..+...+..+.|+ |++ .+|++++.||.|++|
T Consensus 280 v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGS-ADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTS----CSEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEE
T ss_pred eEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEE
Confidence 99999999998 466666 799999999998542 234455556667788887 887 479999999999999
Q ss_pred ECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
|+......... . . ..++ .........+|...|.+++|+|
T Consensus 350 d~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 350 DLSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp EGGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEECS
T ss_pred eCCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEECC
Confidence 98663221100 0 0 0000 0112234557888999999999
Q ss_pred Ccc-eeeccccceecccceeee
Q 008058 360 DGV-LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 360 dg~-~l~~s~s~d~~~~~w~~~ 380 (579)
++. ++ ++++.|+.+++|++.
T Consensus 389 ~~~~~l-~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 389 NEPWII-CSVSEDNIMQVWQMA 409 (430)
T ss_dssp SSTTEE-EEEETTSEEEEEEEC
T ss_pred CCCCEE-EEEECCCCEEEeEcc
Confidence 999 66 999999999999984
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.9e-28 Score=244.66 Aligned_cols=232 Identities=12% Similarity=0.025 Sum_probs=172.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEE----EecCCCCCCEEEEEEcc--------CCCEEEEEeCCCcEEEEeCCCCceee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~----~~~~~h~~~V~~l~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~ 153 (579)
+.++++++.|++|++||..+++... ..+.+|.+.|++++|+| |+++|++|+.|++|++||+.++..+.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 6689999999999999999987542 23578999999999998 88999999999999999999988888
Q ss_pred EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE-------------------------eecCCCCEEEE
Q 008058 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM 205 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~-------------------------~~~h~~~v~~l 205 (579)
.+..|...+.+++|+|++. +|++++ |+|++||+++++.... ..+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999875 788887 8999999988754322 24677889999
Q ss_pred EEe-cCCCEEEEEecCCCeEEEEEcCCCccccce--------------eEEeeecCceeeEeEEecCCcccCCCcEEEEE
Q 008058 206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 206 ~~~-~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (579)
.|+ |+++.+++++ .|+++++||+..++..... ...........+...++. .+++.++++|
T Consensus 261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg 335 (393)
T 4gq1_A 261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH 335 (393)
T ss_dssp EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence 987 7999999987 7999999999876532100 011111222223333333 1355677788
Q ss_pred EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008058 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (579)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (579)
+.||+|++||..+++.+. ...+|..
T Consensus 336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~ 360 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM 360 (393)
T ss_dssp TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence 889999999986654311 2235667
Q ss_pred CcEEEeecCCcceeeccccceecccceee
Q 008058 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+|.+++|||||++| +++++|+. .+|.+
T Consensus 361 ~V~svafspdG~~L-A~as~~Gv-~lvrL 387 (393)
T 4gq1_A 361 PIVDFCWHQDGSHL-AIATEGSV-LLTRL 387 (393)
T ss_dssp CEEEEEECTTSSEE-EEEESSEE-EEEEE
T ss_pred cEEEEEEcCCCCEE-EEEeCCCe-EEEEE
Confidence 89999999999999 99987664 45544
No 109
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.9e-28 Score=244.13 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=161.0
Q ss_pred EEEEccCCCEEEEEe--CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+++|||||+++|+++ .|++|+|||+.+++++..+. |...+..+.|+++ +.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------g~ 189 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------GK 189 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------SS
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------Cc
Confidence 459999999987554 68999999999999988775 4444555555554 77
Q ss_pred EEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEeCCCCce----eeEeecC
Q 008058 88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS 158 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg----~v~iwd~~~~~~----~~~~~~~ 158 (579)
++++++ ++.+.+|+..+++.+ .....+|...|.+++|+|+++++++++.|+ .++.||+..+.. ...+.+|
T Consensus 190 ~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 190 VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence 888887 455677777776654 344567889999999999999999999887 688899876643 3457788
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
...|++++|+|+|++|++|+ ++|+|||+++++++.++ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN 344 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence 99999999999999999998 89999999999999886 78999999999999999999998 7999999999754
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=9.3e-28 Score=246.87 Aligned_cols=239 Identities=14% Similarity=0.264 Sum_probs=191.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++| ++++|++|+.||+|++||+.+++....+..|...+. ++.|.
T Consensus 173 ~~~v--~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~l~~~-------- 222 (435)
T 1p22_A 173 TGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL------------------HLRFN-------- 222 (435)
T ss_dssp SSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE------------------EEECC--------
T ss_pred CCcE--EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE------------------EEEEc--------
Confidence 4667 54466 889999999999999999999999988876655444 34442
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..+++|+.||.|++||+.++.... ....+|...|.++.| +++++++|+.||.|++||+.+++.+..+.+|..
T Consensus 223 ---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 223 ---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp ---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 4579999999999999999876542 445789999999999 788999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc--
Q 008058 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-- 236 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~-- 236 (579)
.|.+++++ ++++++|+ |.|++||+++++.+.++.+|...|.++.| ++.++++++ .||.|++||+..+....
T Consensus 298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~ 372 (435)
T 1p22_A 298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRAP 372 (435)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTSC
T ss_pred cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcccc
Confidence 99999994 67888887 89999999999999999999999999999 678999988 79999999997654211
Q ss_pred --ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
..+...+..+...+..+.| ++.+|++++.||.|++||+.+.....
T Consensus 373 ~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 373 AGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp TTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC--------
T ss_pred ccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 1134455555555666665 56789999999999999998765543
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.7e-27 Score=242.15 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=213.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|+|++.++++++.|+.|++||..+++....+.... ..+| ...+.++.|.+. +.+
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~ 183 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NEL 183 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEE
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEE
Confidence 355999977788888889999999999998876432100 0112 223455666332 778
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
+++++.++.|++||+.+++.+..+ ..|...+.+++|+|+++.+++++ .|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 261 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL 261 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred EEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence 999999999999999999888666 46888999999999999886554 7999999999999988887754 46899999
Q ss_pred ccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 168 SSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 168 ~p~g~~l~~~~----------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+|+|+.+++++ |.|++||+++++.+..+ .|...+.+++|+|++++++.++..|+.|++||+.+++..
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-- 338 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-- 338 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--
Confidence 99999888765 38999999999877766 466688999999999877666558999999999976533
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---------------CCeEEEEECCCceeecccCCceEEeeeccc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
..+.+. ..+..+.|+ |+|+++++++. ||.|++||..+++.+..
T Consensus 339 ---~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~------------- 396 (433)
T 3bws_A 339 ---KSIPVF-DKPNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF------------- 396 (433)
T ss_dssp ---EEEECS-SSEEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE-------------
T ss_pred ---EEecCC-CCCCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE-------------
Confidence 333433 335567777 99999988876 46888888766543321
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+.. ...+..++|+|||++|.++++.|+++++|++.
T Consensus 397 ------------------------------------------~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 397 ------------------------------------------WEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ------------------------------------------EEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ------------------------------------------ecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 111 22578899999999983344469999999874
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.4e-28 Score=263.85 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=195.6
Q ss_pred CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+.++++|+.||.|++||+.. ++....+ .+|.++|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 21 g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 77899999999999999984 4455444 689999999999988 9999999999999999999887 677788899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008058 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG 220 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~-------------~~~~l~s~s~~ 220 (579)
..|++++|+|+ ++++++|+ |.|++||++++ .....+.+|...|.++.|+| ++.++++++ .
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~ 178 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 178 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-T
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-C
Confidence 99999999999 99999998 89999999887 34556788999999999999 588899988 7
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC---CcEEEEEEcCCeEEEEECCCceeecccCCceEEe
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
||.|++||++.+... ......+..+...+.++.|+ |+ +.+|++++.||.|++||+.+++......
T Consensus 179 dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~s-----p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~------ 246 (753)
T 3jro_A 179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT------ 246 (753)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC------
T ss_pred CCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEec-----cCCCCCCEEEEEecCCEEEEecCCCCCCcceeE------
Confidence 999999999887532 22444556666778888888 88 8999999999999999987653210000
Q ss_pred eecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
+ .....|...+.+++|+|||.++ ++++.|+.+++|
T Consensus 247 ----------------~----------------------------~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vw 281 (753)
T 3jro_A 247 ----------------L----------------------------LKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 281 (753)
T ss_dssp ----------------B----------------------------SSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECC
T ss_pred ----------------E----------------------------eccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEE
Confidence 0 0112466789999999999999 999999999999
Q ss_pred eee
Q 008058 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
++.
T Consensus 282 d~~ 284 (753)
T 3jro_A 282 KEN 284 (753)
T ss_dssp BCC
T ss_pred ecC
Confidence 985
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.9e-27 Score=243.86 Aligned_cols=257 Identities=11% Similarity=0.107 Sum_probs=187.4
Q ss_pred CcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCeEEEEec---cccc------cccccccc--------------cc
Q 008058 4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYG--------------NR 58 (579)
Q Consensus 4 ~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~------~~~~~~~~--------------~~ 58 (579)
++| .+++|+|++ .+|++++.||+|++||+.++....... .+.+ .+....+. ..
T Consensus 94 ~~V--~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKI--NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCC--CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred Cce--EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 678 555999998 799999999999999998765432110 0000 00000000 00
Q ss_pred cccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEE------ecCCCCCCEEEEEEccCC-C
Q 008058 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWR------LSDCHPGGVSAISFATHG-S 130 (579)
Q Consensus 59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~------~~~~h~~~V~~l~~~~~~-~ 130 (579)
+..+| ...+.+++|.+. +.++++| .||.|++||+.++ +.... ...+|...|++++|+|++ +
T Consensus 172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 01123 345677888774 6788888 8999999999954 44332 246799999999999998 9
Q ss_pred EEEEEeCCCcEEEEeCCCCce----eeEeecCCC------------CeeEEEEccCCCEEEEEC-CeEEEEECCC-Ceee
Q 008058 131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM 192 (579)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~~p~g~~l~~~~-g~i~vwd~~~-~~~~ 192 (579)
+|++|+.||.|++||+++++. +..+..|.. .|.+++|+|+|++|++++ +.|++||+++ ++++
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence 999999999999999999886 788888876 899999999999999998 9999999997 8888
Q ss_pred EEeecCCCC---------------EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE-----------------
Q 008058 193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV----------------- 240 (579)
Q Consensus 193 ~~~~~h~~~---------------v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~----------------- 240 (579)
..+.+|... +..++|+|++++|++++ .|+.|++||+.+++.......
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence 889888642 23499999999999887 799999999998763210000
Q ss_pred -----------EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
... .....+..+.|+ |++.+||+++.++ +++|..
T Consensus 400 ~~~~~~~~~~~~~~-~~~~~i~~~~~~-----p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 400 SGKRKKDEISVDSL-DFNKKILHTAWH-----PKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp SSCCCTTCEEGGGC-CTTSCCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred cCCccccccccccc-ccCCceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence 000 112234456776 9999999988775 778764
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.7e-26 Score=229.91 Aligned_cols=264 Identities=13% Similarity=0.099 Sum_probs=206.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE-EEEECCC
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g 96 (579)
..+++++.|+.|++||..++++...+..+.. ..+++|.+. +..+ ++++.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-------------------~~~~~~s~d---------g~~l~~~~~~d~ 54 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-------------------PMGAVISPD---------GTKVYVANAHSN 54 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-------------------EEEEEECTT---------SSEEEEEEGGGT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-------------------cceEEECCC---------CCEEEEECCCCC
Confidence 3677888999999999999999887764332 345555543 5555 6666899
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE-
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML- 174 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l- 174 (579)
.|++||+.+++.+..+.. + ..+.+++|+|++++++.+ +.++.|++||+.+++.+..+..+ ..+.+++|+|+|+.+
T Consensus 55 ~i~v~d~~~~~~~~~~~~-~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPA-G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred eEEEEECCCCeEEEEEEC-C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999998877643 3 389999999999987655 46799999999999988887754 478999999999977
Q ss_pred EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEe
Q 008058 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 175 ~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (579)
++++ +.|++||+.+++.+..+..| ..+..++|+|++++++.++..|+.|++||+++++.. ....+.. .+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~ 204 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG 204 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence 5665 89999999999998888765 456999999999988655557999999999887533 3344443 4556
Q ss_pred EEecCCcccCCCcEEEEEE---cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceE
Q 008058 253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (579)
+.|+ |++++|++++ .++.|++||+.+++.+..
T Consensus 205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~---------------------------------------- 239 (391)
T 1l0q_A 205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITAR---------------------------------------- 239 (391)
T ss_dssp EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEE----------------------------------------
T ss_pred eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEEE----------------------------------------
Confidence 7777 9999999988 689999999877643221
Q ss_pred EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+..|. .+.+++|+|||+++.++++.|+.+++|++.
T Consensus 240 ---------------~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 240 ---------------IPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ---------------EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ---------------EecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 11222 357889999998775788889999999985
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.6e-26 Score=235.02 Aligned_cols=252 Identities=18% Similarity=0.193 Sum_probs=191.7
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| ++++|++++.||.|++||+.+++....+.. . ....++.|.+.+++
T Consensus 98 ~~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~- 155 (408)
T 4a11_B 98 HRYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E------------------ETVYSHHMSPVSTK- 155 (408)
T ss_dssp CSSCE--EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S------------------SCEEEEEECSSCSS-
T ss_pred CCCcE--EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-C------------------CceeeeEeecCCCC-
Confidence 45678 5669999 778999999999999999999988876641 1 23445666665443
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEe---
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKF--- 155 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~-~~~~~--- 155 (579)
+.++++++.+|.|++||+.+++.+..+ .+|...|.+++|+|++++ +++++.||.|++||++++. .+..+
T Consensus 156 -----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 156 -----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp -----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred -----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 678999999999999999999887666 579999999999999984 8899999999999998765 33333
Q ss_pred ------------ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEE
Q 008058 156 ------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 156 ------------~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s 216 (579)
..|...|.+++|+|+++++++++ |.|++||+.+++....+.++. ..+........+..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 56788999999999999999987 899999999987765443322 11221222233445555
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
++ .|+.|++||+.+++. +..+..+...+..+.|+ |++.+|++++.||.|++||+.+++.+.....
T Consensus 310 ~~-~~~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 310 VP-YGSTIAVYTVYSGEQ-----ITMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp EE-ETTEEEEEETTTCCE-----EEEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC---------
T ss_pred Ee-cCCEEEEEECcCCcc-----eeeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 55 589999999998763 35566666777888888 9999999999999999999999987765443
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.2e-28 Score=244.51 Aligned_cols=249 Identities=14% Similarity=0.176 Sum_probs=190.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..| .+++|||||++||+++.||+|+|||.++ ++..+. |...+. ...+.+++|.|.
T Consensus 85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------ 140 (588)
T 2j04_A 85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------ 140 (588)
T ss_dssp SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence 3567 7779999999999999999999999543 555555 443211 123446666554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeE-------EEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL- 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~-------~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~- 151 (579)
+.+|++|+.||+|++||+.++.. +..+ ..+|.+.|.+++|+||| +++++.|++|++||+..+..
T Consensus 141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 88999999999999999998852 3343 26788999999999999 88889999999999987773
Q ss_pred --eeEee-cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEE--ecCCCEEEEEecCCCeEE
Q 008058 152 --LGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 152 --~~~~~-~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~s~~d~~i~ 225 (579)
.++++ +|...|.+++|+ |+.+++++ ++|++||+.+++......+|.+.|..+.| +|++..+++++ +||+ +
T Consensus 216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k 291 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K 291 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence 35664 788899999999 68888888 99999999988774444489999999999 99998888876 7999 9
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
+|..+. +.++ |++..+++. |+++++|+..... +...+. ...+.+.. ++|
T Consensus 292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va-~SP 340 (588)
T 2j04_A 292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGIS-LSP 340 (588)
T ss_dssp EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEE-ECT
T ss_pred EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEE-ECC
Confidence 999761 2254 888877764 9999999875443 444444 33333333 688
Q ss_pred cccccchhhhhccc
Q 008058 306 SQKSATAAIFAAKL 319 (579)
Q Consensus 306 ~~~~~~~~i~~~~~ 319 (579)
+++ .+++++.
T Consensus 341 dG~----~lA~~~~ 350 (588)
T 2j04_A 341 DGY----SIAIVYD 350 (588)
T ss_dssp TSS----EEEEEEE
T ss_pred CCC----EEEEEEe
Confidence 887 5665554
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-26 Score=229.90 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=179.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|+.+ +|+|+ +++++.|++|++|+.........+.. ..... ....+| ...+.++.|.+..
T Consensus 77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~--~~~~~-----~~~~~~-~~~v~~~~~~~~~------ 137 (343)
T 3lrv_A 77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKT--NKVLR-----EIEVDS-ANEIIYMYGHNEV------ 137 (343)
T ss_dssp ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTT--CCEEE-----EEECCC-SSCEEEEECCC--------
T ss_pred CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCC--cceeE-----EeecCC-CCCEEEEEcCCCC------
Confidence 456445 88888 99999999999998764322221110 00000 000011 2245666666510
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eEeec-CCCC
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRA-STKG 161 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~-~~~~ 161 (579)
.+.++++|+.||.|++||+.+++........|...|++++|+|+|.+|++|+.||.|++||+++++.+ ..+.. |..+
T Consensus 138 -~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 138 -NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 07889999999999999999999876555566778999999999999999999999999999999887 78888 9999
Q ss_pred eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec---CCCCEE--EEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~---h~~~v~--~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|++++|+|+|.+|++++ +.|++||+++++.+..+.. |...+. +++|+|++++|++++..|+.+++|++......
T Consensus 217 v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 99999999999999998 8999999999876554443 444454 59999999999998734999999999776533
Q ss_pred cceeEEeeecCceeeEeEEecCCcccC---CCcEEEEEEcCCeEEEEE
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY 280 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~iwd 280 (579)
+.. .....+.|. + +...+++++.||.+.++-
T Consensus 297 -----~~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 297 -----WTK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp -----EEE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred -----eEe----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence 111 233445554 5 788999999999999874
No 118
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.3e-26 Score=229.92 Aligned_cols=244 Identities=10% Similarity=0.006 Sum_probs=193.0
Q ss_pred CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMV 141 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v 141 (579)
..+++++|.+. +.+|++++.+|.|++||+.+++ ..... .+|...|++++|+|+++ +|++++.||.|
T Consensus 12 ~~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 12 DYISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CcEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 35667777764 7789999999999999999877 22233 47999999999999999 99999999999
Q ss_pred EEEeC-CCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---------CeeeEEeecCCCCEEEEEE
Q 008058 142 CEIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 142 ~iwd~-~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~ 207 (579)
++||+ .+++. ..+.+ |...|.+++|+| ++++++++ +.|++||+++ ++++..+. |...|.+++|
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 99999 77754 67788 999999999999 99999887 8999999988 77777776 8999999999
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCC-CccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCc-
Q 008058 208 SDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI- 284 (579)
Q Consensus 208 ~~~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~- 284 (579)
+|++ +++++ .|+.|++||++. .... .......+...+.++.|+ | ++.++++++.||.|++|+++..
T Consensus 159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CSSE--EEEEE-STTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred cCCc--EEEEe-CCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9987 77776 799999999988 5432 112223444556778887 8 9999999999999999998765
Q ss_pred -----eeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058 285 -----EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 285 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
+....... ... .. .-.+|...|.+++|+|
T Consensus 228 ~~~~~~~~~~~~~-------------~~~-----------------------------~~----~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 228 DDYNSSKRFAFRC-------------HRL-----------------------------NL----KDTNLAYPVNSIEFSP 261 (342)
T ss_dssp CSTTCTTCEEEEC-------------CCC-----------------------------CT----TCCSSCCCEEEEEECT
T ss_pred cccccccceeeec-------------ccc-----------------------------cc----cccccceeEEEEEEcC
Confidence 11110000 000 00 0014667899999999
Q ss_pred Ccceeeccccceecccceeee
Q 008058 360 DGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+|.+| ++++.|+.+++|++.
T Consensus 262 ~~~~l-~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 262 RHKFL-YTAGSDGIISCWNLQ 281 (342)
T ss_dssp TTCCE-EEEETTSCEEEEETT
T ss_pred CCCEE-EEecCCceEEEEcCc
Confidence 99999 999999999999985
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-26 Score=236.22 Aligned_cols=242 Identities=11% Similarity=0.051 Sum_probs=189.3
Q ss_pred cccceEEEEccCCCEE-EEEeCCCcEEEEECC--CCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~l-as~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+| .+++|+|+|++| ++|+.||+|+|||+. ++.+...+..+. ....+++++|.+.
T Consensus 104 ~v--~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------~~~~v~~~~~sp~----- 160 (450)
T 2vdu_B 104 YI--RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC----------------FSKRPNAISIAED----- 160 (450)
T ss_dssp CE--EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE----------------CSSCEEEEEECTT-----
T ss_pred ce--EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc----------------CCCCceEEEEcCC-----
Confidence 57 566999999996 889999999999999 888777765211 1223456666553
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEE---EecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGK- 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~---~~~~~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (579)
+.+|++|+.+|.|++|++.+++... ....+|...|++++|+|+ +++|++++.|++|++||+.+++.+..
T Consensus 161 ----~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 ----DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ----SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred ----CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 7889999999999999998876532 133579999999999999 99999999999999999999988887
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec-------------------------CCCCEEEEEE
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------------------HPGAVRFMTF 207 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~-------------------------h~~~v~~l~~ 207 (579)
+.+|...|.+++|+ ++++|++++ +.|++||+++++.+..+.. +...|.++.|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 55899999999999 999999998 8999999999998888763 2457899999
Q ss_pred ecCCCEEEEEecCCCeEEEEEc--CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc------CCeEEEE
Q 008058 208 SDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIW 279 (579)
Q Consensus 208 ~~~~~~l~s~s~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iw 279 (579)
+|+++++++++..|+.|++|++ ..+... ..+..+..+ ..+..+.|+ |++.++++++. +..|.+|
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l--~~~~~~~~~-~~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDL--ALKQIITFP-YNVISLSAH-----NDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCE--EEEEEEECS-SCEEEEEEE-----TTEEEEEECCTTCCSSCCCSEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCce--eeccEeccC-CceEEEEec-----CCcEEEEEecccCCCCCCcceEEE
Confidence 9999999998756999999999 433211 234444444 445667776 75444444443 4557888
Q ss_pred ECC
Q 008058 280 YGQ 282 (579)
Q Consensus 280 d~~ 282 (579)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.6e-26 Score=234.19 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=161.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEE-----eccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTE-----FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
.+++++.+||+|+.|++|+|||..++..... +.+|.. .+.+++|.|..... ...++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~------------------~v~~v~~~p~~~~~-~~~d~ 156 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN------------------FVNDIDIADVYSAD-NRLAE 156 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS------------------CEEEEEEEEEECTT-CSEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC------------------ceEEEEEccccccc-cCCCC
Confidence 4566778999999999999999998876432 333443 34556665521100 00017
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~---------- 155 (579)
.+|++|+.|++|+|||+.++..+..+. +|..+|.+++|+|++. +|++++.||+|++||+++++.....
T Consensus 157 ~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 899999999999999999888776664 6888999999999875 7999999999999999887543322
Q ss_pred ---------------ecCCCCeeEEEEc-cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec--------
Q 008058 156 ---------------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------- 209 (579)
Q Consensus 156 ---------------~~~~~~v~~l~~~-p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-------- 209 (579)
.+|...+.++.|+ |+|+.+++++ +.+++||+.+++....+..|...+..+.+.|
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 3466788899987 7999999998 8999999998877766666665554443333
Q ss_pred -----------CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 210 -----------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 210 -----------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
.+..++++++.|+.|++||+.+++.. .....+...+..++|+ |+|++||+++.+| +.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-----~~~~~~~~~V~svafs-----pdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-----SIPIQLGMPIVDFCWH-----QDGSHLAIATEGS-VLL 384 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-----EEEEECSSCEEEEEEC-----TTSSEEEEEESSE-EEE
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-----EEecCCCCcEEEEEEc-----CCCCEEEEEeCCC-eEE
Confidence 23445555558999999999988644 2233344467788888 9999999998766 555
Q ss_pred EEC
Q 008058 279 WYG 281 (579)
Q Consensus 279 wd~ 281 (579)
|.+
T Consensus 385 vrL 387 (393)
T 4gq1_A 385 TRL 387 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=3.9e-25 Score=211.34 Aligned_cols=248 Identities=14% Similarity=0.091 Sum_probs=177.0
Q ss_pred EEEEEeCCCcEEEEECCCC---eEEEEeccccccccccccccccc------cccc-cCccceEEeeeccccccc------
Q 008058 19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLE------REHL-SVDYTCMKWLSVDRKKKR------ 82 (579)
Q Consensus 19 ~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~w~~~~~~~~~------ 82 (579)
.+++++ ...|++|+..++ +..++++.+..++..+.+.++.. -|++ ...+..+++.|.++..+.
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 455666 568999999999 89999999999999998888511 0111 112334444443211000
Q ss_pred ------ccCCcEEEEEE---CCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC
Q 008058 83 ------KLGSSLLVLGT---GGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 83 ------~~~~~~l~~~~---~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~ 149 (579)
......++.++ .++.|++|++.. |+.+..+ .+|...++.++|+| ++.+|++++.|++|++||+.+|
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 00122233333 378899999844 6665444 46888888888888 7789999999999999999999
Q ss_pred ceeeEeecCCC---CeeEEEEccCCCEEE------------EEC--CeEEEEECCCCeeeEEe-----ecCCCCEEEEEE
Q 008058 150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF 207 (579)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~------------~~~--g~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~ 207 (579)
++++++.+|.. .+.+++|+|+|.+++ +|+ ++|++||..+++.+..+ .+|...+.+..+
T Consensus 214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 99999987543 677889999999874 344 79999999999987765 367666554444
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 208 ~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
+ +.++++++ .|++|++||+.+++. +.++. |....+..+.|+ |||++|++|+.|++|+|||+
T Consensus 294 s--g~~lASgS-~DgTIkIWDl~tGk~-----l~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 K--DHCAAAIL-TSGTIAIWDLLLGQC-----TALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--TTEEEEEE-TTSCEEEEETTTCSE-----EEEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred C--CCEEEEEc-CCCcEEEEECCCCcE-----EEEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence 3 77888877 799999999999873 35554 444455667888 99999999999999999985
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=224.91 Aligned_cols=239 Identities=12% Similarity=0.037 Sum_probs=179.0
Q ss_pred CcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.+|++|+.||.|++||+.+ +..+.....+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~ 132 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT 132 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEE
Confidence 47899999999999999998 665545557899999999999999999999999999999999888776 5569999999
Q ss_pred EEE--ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 165 MAV--SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 165 l~~--~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
++| +|+++++++++ |.|++||+++++.+..+..|. .+.++.+.+ ..+++++ .|+.+.+|+++..... ..
T Consensus 133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~---~~ 205 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AERGLIVYQLENQPSE---FR 205 (368)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GGGCEEEEECSSSCEE---EE
T ss_pred EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEe-CCCcEEEEEeccccch---hh
Confidence 999 89999999987 899999999999999888664 666676664 4677776 5999999999876532 11
Q ss_pred EeeecCceeeEeEEecCCcccCCC----cEEEEEEcCCeEEEEECCCcee---ecccCCceEEeeecccCcccccccchh
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEE---LRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
...........+..+. +++ ..+++++.||.|++||+..... +.....+.. .
T Consensus 206 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~------------~----- 263 (368)
T 3mmy_A 206 RIESPLKHQHRCVAIF-----KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS------------N----- 263 (368)
T ss_dssp ECCCSCSSCEEEEEEE-----ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE------------C-----
T ss_pred hccccccCCCceEEEc-----ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec------------c-----
Confidence 1111111222233332 222 3399999999999999876632 111100000 0
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.......+|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus 264 --------------------------~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 264 --------------------------GTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ------------------------------CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred --------------------------cccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence 0000123466689999999999999 9999999999999853
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=3e-24 Score=217.27 Aligned_cols=240 Identities=10% Similarity=0.064 Sum_probs=190.0
Q ss_pred eEEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+++|+|+|+++ ++++.|++|++||..+++....+..+. ...+++|.+. +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spd---------g~ 86 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPD---------GK 86 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SS
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCC---------CC
Confidence 566999999977 566689999999999999888775332 3345555543 55
Q ss_pred EEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 88 LLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 88 ~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
.+++ ++.++.|++||+.+++.+..+. +...+.+++|+|+|+.+ ++++.|+.|++||+.+++.+..+..+ ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 5654 4466999999999999876653 34578999999999987 67778999999999999988888765 467999
Q ss_pred EEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeE
Q 008058 166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 166 ~~~p~g~~l~-~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~ 240 (579)
+|+|+|+.++ +++ +.|++||+++++.+..+. +...+.+++|+|+++++++++. .++.|++||+.+++..
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----- 237 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----- 237 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence 9999999874 554 799999999998887776 5567899999999999998874 5899999999887533
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEE-EEEEcCCeEEEEECCCceeecccC
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+..+.. ...+.|+ |+|++| ++++.|+.|++||+.+++.+....
T Consensus 238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 33333333 4566776 899888 566789999999999988776543
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.7e-25 Score=231.69 Aligned_cols=323 Identities=8% Similarity=-0.010 Sum_probs=227.7
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+|+|++.++++++.|++|.+||..+++++..+..... +..+.|+++ ++++++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v 195 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV 195 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence 5899999999999999999999999999988863222 333444444 889999
Q ss_pred EECCCeEEEEEc--cCCeEEEEecCCCCCCEEEEEEcc----CCCEEEEEe-CCCcEEEEeCCCCceeeEeecC------
Q 008058 92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------ 158 (579)
Q Consensus 92 ~~~~g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------ 158 (579)
++.++.|.+||+ .+++++.++. +...+..++|+| ||+++++++ .+++|.+||..+++++.++..+
T Consensus 196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 999999999999 8888887764 456789999999 999999888 4899999999999998887652
Q ss_pred ----CC-CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 159 ----TK-GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 159 ----~~-~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
.. .+.++.++|++..++++. +.|.+||..+.+.+. .+ .+...+..+.|+|+|+++++++..+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22 788999999887666554 899999998876544 44 36667889999999999888776789999999
Q ss_pred cCCCccccceeEEee---ecCceeeEeEEecCCcccCC-CcEEEEEE-cCCeEEEEECCC-------ceeecccCCceEE
Q 008058 229 TDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKIL 296 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~ 296 (579)
..+++.. ..... .|+..... +++ |+ +..++++. .|++|.+||.++ .+.++.++.....
T Consensus 353 ~~tg~l~---~~i~~g~~ph~g~g~~--~~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 353 SKDRRLS---ALVDVGKTPHPGRGAN--FVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp TTTTEEE---EEEECSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CCCCeEE---EeeccCCCCCCCCCcc--cCC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 9998744 11221 13322222 233 66 55566665 589999999988 6666555433211
Q ss_pred eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE--------ecCCCCcEEEeecCCcceeeccc
Q 008058 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ 368 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~~~~s~dg~~l~~s~ 368 (579)
... ..++|+++ .+++++..+.-.-.+..+.+.+-......++.+ ..|...+..+.|+|||+.+.+|.
T Consensus 423 ~~~-v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 423 SLF-IKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp CCC-EECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred ceE-EEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 111 12577777 666665211000002233333322222223443 24566799999999999984442
Q ss_pred ----cceecccceeee
Q 008058 369 ----SLLKSKRGRYVQ 380 (579)
Q Consensus 369 ----s~d~~~~~w~~~ 380 (579)
+.|++|.+||.+
T Consensus 498 ~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 498 WNGKNDSSALVVVDDK 513 (543)
T ss_dssp ECCTTSCCEEEEEETT
T ss_pred ecCCCCCCeEEEEECC
Confidence 358999999975
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=3.3e-25 Score=221.21 Aligned_cols=233 Identities=12% Similarity=0.098 Sum_probs=174.5
Q ss_pred EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++.+++++++ +++.|++|+|||..+++++..+. +... +.++.|.+ ..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~------------------v~~v~~~~-----------~~ 112 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAP------------------VKDLFLSR-----------EF 112 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSC------------------EEEEEECS-----------SE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCc------------------eEEEEEcC-----------CE
Confidence 448888888875 56778999999999999988775 2222 33344422 22
Q ss_pred EEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEE--EeCCCcEEEEeCCCCc---------------
Q 008058 89 LVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS--------------- 150 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s--~~~dg~v~iwd~~~~~--------------- 150 (579)
++++ .++.|++||+.++ +.+..+.. +...+++++ .+++. |+.||.|++||+.+++
T Consensus 113 ~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 113 IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL 185 (355)
T ss_dssp EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence 3443 5789999999988 55433321 455566777 56665 5789999999998765
Q ss_pred -eeeEeecCCCCeeEEEEccCCCEEEEEC--Ce-EEEEECCCCeeeEEee-c-CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 151 -LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 151 -~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~-i~vwd~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
.+..+.+|...|++++|+|+|++|++|+ ++ |++||+++++.+.++. + |...|.+++|+|++++|++++ .|++|
T Consensus 186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v 264 (355)
T 3vu4_A 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTL 264 (355)
T ss_dssp -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEE
T ss_pred cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEE
Confidence 2678999999999999999999999998 87 9999999999999998 6 999999999999999999998 79999
Q ss_pred EEEEcCCCcccccee-----------------EEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 225 ALWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
++||++......... .+.+.. .......++|+ ++|++|++++.||.+++|++..++
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCC
Confidence 999998764221100 000111 11112446676 899999999999999999876543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=9.8e-26 Score=215.47 Aligned_cols=213 Identities=11% Similarity=0.065 Sum_probs=159.1
Q ss_pred CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEE-ecccccccccccccccccc--c--cccCccceEEee
Q 008058 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLER--E--HLSVDYTCMKWL 74 (579)
Q Consensus 4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~w~ 74 (579)
.+|+.+ +|+|| ++++++++.+ ++||++.+++.+.. ..+|...+....++++-.. . -.....+.+.|.
T Consensus 112 ~~v~sl--a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 112 REIRAL--FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp EEEEEE--CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cceEEE--EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 356555 99999 9999998854 77888888887776 4677777777777665100 0 113345667777
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEE------------EEEeCCCc
Q 008058 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGADGM 140 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l------------~s~~~dg~ 140 (579)
+.+.+ +..|++|+.|++|+|||+.+|+++..+..+| ...+.+++|+|+|.++ ++|+.|++
T Consensus 188 ~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 188 EVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp EEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred ccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 64433 7899999999999999999999988874332 3468888999999876 56788999
Q ss_pred EEEEeCCCCceeeEe-----ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE-EEEEecCCC
Q 008058 141 VCEIDPLTGSLLGKF-----RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSDNGK 212 (579)
Q Consensus 141 v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~ 212 (579)
|++||..+++.+..+ .+|...+.+..+ ++.++++++ ++|+|||+.+++++.++.+|...+. .++|+|||+
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~ 339 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS 339 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS
T ss_pred EEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC
Confidence 999999999887765 355555544444 478899987 8999999999999999999987655 589999999
Q ss_pred EEEEEecCCCeEEEEEc
Q 008058 213 YVLSSAVGERYIALWRT 229 (579)
Q Consensus 213 ~l~s~s~~d~~i~vwd~ 229 (579)
+|++++ .|++|++||+
T Consensus 340 ~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp EEEEEC-TTSCEEEEEE
T ss_pred EEEEEE-CCCcEEEecC
Confidence 999997 7999999996
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=7.9e-24 Score=215.61 Aligned_cols=311 Identities=9% Similarity=-0.027 Sum_probs=214.1
Q ss_pred EEccCCC-EEEEEe----CCC----cEEEEEC--CCCeEE--EEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 12 SFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 12 ~fs~dg~-~las~s----~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+|++.|. ++++|+ .|| +|++||+ .+++++ ..+.++...+....+.+. +..+. ...
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~-----~~~- 136 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTAS------DEVFE-----KLT- 136 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHH------HHHHH-----HHH-
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHH------HHHHH-----HHc-
Confidence 7888874 666876 467 8999999 899877 446666554444333321 00000 000
Q ss_pred ccccccCCcEEEEEECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCC
Q 008058 79 KKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTG 149 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~ 149 (579)
..+...+..++.++.+ +.|++||+..+.. ..+ .+|...|.+++|+|||++|++++.++ .|++||+.++
T Consensus 137 -g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 137 -GIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp -SSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred -CCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 0000003445555544 6899999985543 333 46889999999999999999999875 9999999988
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEE-EEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--
Q 008058 150 SLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-- 222 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~-~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~-- 222 (579)
+.. .+..+...+.+++|+|||+.|+ +++ ..|++||+.+++. ..+..|...+.+++|+|||++|++++..++
T Consensus 214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 775 4666788999999999999888 554 3699999998865 567788899999999999999998874345
Q ss_pred eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCCceeecccCCceEEeee
Q 008058 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
.|++||+.+++.. .+..+...+....|+ |+|++|++++.+ +.|++||+.+++...-. ... ...+
T Consensus 292 ~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~~~-~~~~ 358 (415)
T 2hqs_A 292 QVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STF-LDET 358 (415)
T ss_dssp EEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSS-SCEE
T ss_pred EEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEEEec-CCC-CcCC
Confidence 6788898876532 222333455567787 999999998874 58999999988654322 211 1111
Q ss_pred cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcce
Q 008058 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (579)
..++|+++ .|+.++.++. ...+++..- .....+.+..|.+.|.+++|+|.-.+
T Consensus 359 -~~~spdg~----~l~~~s~~~~----~~~l~~~d~--~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 359 -PSLAPNGT----MVIYSSSQGM----GSVLNLVST--DGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp -EEECTTSS----EEEEEEEETT----EEEEEEEET--TSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred -eEEcCCCC----EEEEEEcCCC----ccEEEEEEC--CCCcEEEeeCCCCCCcCCcccccccc
Confidence 12677777 6777666531 123333331 23445677889999999999997654
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.3e-23 Score=215.67 Aligned_cols=236 Identities=8% Similarity=0.049 Sum_probs=187.6
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
++| .+++|+|+|+++++++.|+.|++||..+++....+..+...+. +++|.+.
T Consensus 170 ~~v--~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~------------------~~~~~~~------- 222 (433)
T 3bws_A 170 GFV--ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK------------------ILLYDPI------- 222 (433)
T ss_dssp CEE--EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE------------------EEEEETT-------
T ss_pred Cce--eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee------------------EEEEcCC-------
Confidence 356 4559999999999999999999999999998888765544333 4455443
Q ss_pred cCCcEEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--------CCCcEEEEeCCCCceeeE
Q 008058 84 LGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 84 ~~~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--------~dg~v~iwd~~~~~~~~~ 154 (579)
+..++ +++.++.|++||+.+++.+..+. +...+.+++|+|+|+++++++ .||.|++||+.+++.+..
T Consensus 223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 223 --RDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp --TTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred --CCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 55564 45578999999999998876653 345699999999999999888 488999999999987776
Q ss_pred eecCCCCeeEEEEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----------
Q 008058 155 FRASTKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG----------- 220 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~-~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~----------- 220 (579)
+. +...+.+++|+|+++.++ +++ +.|++||+.+++.+..+. +...+.+++|+|+++++++++..
T Consensus 299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 64 456889999999997654 444 899999999999888876 77889999999999988888743
Q ss_pred ---CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCC
Q 008058 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (579)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 283 (579)
||.|++||+.+++.. ..+... ..+..+.|+ |+|++|++++. ||.|++|+++.
T Consensus 377 g~~dg~v~~~d~~~~~~~-----~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVK-----EFWEAG-NQPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CSSCCEEEEEETTTTEEE-----EEEECS-SSEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred cccceEEEEEECCCCcEE-----EEecCC-CCCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence 469999999887633 333333 345677777 99999998875 99999999763
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4.6e-23 Score=226.71 Aligned_cols=341 Identities=9% Similarity=0.038 Sum_probs=217.4
Q ss_pred CcccceEEEEccCCCEEEEEeC-CC-----cEEEEECCCCeEEEEecccccccccccccccc--c--cccc--cCccceE
Q 008058 4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRL--E--REHL--SVDYTCM 71 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~--~~~~~~~ 71 (579)
.+| ..++|||||++|++++. |+ +|++||+.+++....+..+........++..- . ..+. ...+..+
T Consensus 37 ~~~--~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTL--MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCC--EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCC--CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456 45599999999999998 88 89999999998776665432210000000000 0 0000 0123455
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 148 (579)
.|.|. ++.|++++. +.|++||+.++ +.. .+ ..|...+.+++|+|||++|++++ ++.|++||+.+
T Consensus 115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 66554 777888886 99999999988 543 33 46778899999999999999887 56899999998
Q ss_pred CceeeEeecCCCC----------------eeEEEEccCCCEEEEEC--C-------------------------------
Q 008058 149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G------------------------------- 179 (579)
Q Consensus 149 ~~~~~~~~~~~~~----------------v~~l~~~p~g~~l~~~~--g------------------------------- 179 (579)
++.......+... +.+++|+|||++|++++ +
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 8766554433332 47899999999998875 3
Q ss_pred --eEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEec----CCCeEEEEEcCCCccccceeEEeeecCce--
Q 008058 180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV-- 248 (579)
Q Consensus 180 --~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-- 248 (579)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.+++.. .+........
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~ 337 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP 337 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence 789999988 77654433 47788999999 99999987753 2568999999987643 2222211111
Q ss_pred eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC-CceeecccCCceEEeeecccCcccccccchhhh-hccccceecCC
Q 008058 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIF-AAKLQDIVKPA 326 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 326 (579)
.+....|+ |||+++++++.||.++||.++ ++. ...+......+.....++++++ .|+ +++.++. .
T Consensus 338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~~---~ 404 (741)
T 2ecf_A 338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIESA---R 404 (741)
T ss_dssp CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSCT---T
T ss_pred cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCCC---c
Confidence 22456676 999999999999988888765 233 3333322222221112566666 443 3433320 0
Q ss_pred ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce---ecccceee
Q 008058 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYV 379 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~ 379 (579)
...++..... ....+.+.. ...+..++|||||+++.++.+.+ ..+.+++.
T Consensus 405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 1223333211 112234443 45678999999999884544432 34566654
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=6.3e-22 Score=195.26 Aligned_cols=287 Identities=9% Similarity=0.046 Sum_probs=195.2
Q ss_pred EEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
.|++++++ +++++.+++|++||..+++....+..+.... .++|.+. ++.++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~s~d---------g~~l~ 55 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-------------------DTAITSD---------CSNVV 55 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-------------------EEEECSS---------SCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-------------------eEEEcCC---------CCEEE
Confidence 57777665 6677789999999999999887765332222 3334332 66566
Q ss_pred EEEC-CCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 91 ~~~~-~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++ .|++||+.+++.+..+.. ...+.++
T Consensus 56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 133 (331)
T 3u4y_A 56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGI 133 (331)
T ss_dssp EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEE
T ss_pred EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccce
Confidence 6655 88999999999987 4444 44555555599999999999555553 899999999998888774 3457999
Q ss_pred EEccCCCEEEEEC---Ce-EEEEECCCCeee----EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 166 ~~~p~g~~l~~~~---g~-i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+|+|+|+++++++ +. |.+|++.....+ .....+...+..++|+|+|+++++++..++.|.+||+.+++...
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT- 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence 9999998766654 67 999998764332 12223445689999999999877776678999999998876411
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
.+..+... .....+.|+ |+|+++++++ .++.|.+||..+++..... .... . .....
T Consensus 213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~-~-~~~~~--------- 269 (331)
T 3u4y_A 213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGH-G-LLIDP--------- 269 (331)
T ss_dssp -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEEC-C-CCCCC---------
T ss_pred -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----cccc-c-cccCC---------
Confidence 12333333 334556677 9999887765 4788999999887652110 0000 0 00000
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
.+......++|+|||++|.++++.++.+++|++.+.
T Consensus 270 ------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 270 ------------------------------RPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ------------------------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 001122568899999988566676789999998543
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=3.9e-23 Score=226.63 Aligned_cols=321 Identities=9% Similarity=0.044 Sum_probs=206.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|||||+++++ +.||+|++||..+++....+..+... ...+..+.|.|. ++.
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~---------------~~~v~~~~~SpD---------g~~ 74 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REY 74 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSE
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc---------------ccccceEEECCC---------CCE
Confidence 45599999998876 78999999999999887766544321 001334444442 788
Q ss_pred EEEEECC---------CeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 89 LVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 89 l~~~~~~---------g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
|++++.+ +.|.+||+.+++.. .+. .+|...+..++|+|||+.|++++. +.|++||+.+++..+....
T Consensus 75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 8888774 77999999998762 222 345556899999999999999875 7999999998887666554
Q ss_pred CCCCe------------------eEEEEccCCCEEEEEC--C----------------------------------eEEE
Q 008058 158 STKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QLKT 183 (579)
Q Consensus 158 ~~~~v------------------~~l~~~p~g~~l~~~~--g----------------------------------~i~v 183 (579)
+...+ .+++|+|||+.|++++ + .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 43333 7899999999999875 2 7999
Q ss_pred EECCCCeeeEEeecC------CCCEEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccceeEEeeecCceee---E
Q 008058 184 FNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFM---D 251 (579)
Q Consensus 184 wd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~ 251 (579)
||+.+++....+..+ ...+..++|+|||+++++.+. .+..|++||+.+++.. .+....+....- .
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQNE 309 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEeccCC
Confidence 999988866666654 567899999999998877643 2357999999887633 222222222111 2
Q ss_pred eEEecCCcccCCCcEEEEE--EcCC------eEEEEE-CCCcee--ecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058 252 CRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
...|+ |||+.|+.. ..+| .|++|| ..+++. ..........+.....++++++ .|+..+.+
T Consensus 310 ~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~~~ 380 (723)
T 1xfd_A 310 EPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLSTE 380 (723)
T ss_dssp CCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEESS
T ss_pred CceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEEcC
Confidence 45676 999977754 4567 577777 344430 3322221111111112677777 55544333
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEec---CCCCcEEEeecCCcceeeccccce
Q 008058 321 DIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL 371 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~~s~s~d 371 (579)
+. .....++...-.. ......+.. |...+..++|||||+++.++.+.+
T Consensus 381 ~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 381 DL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 10 0122333332110 001112222 566788999999999885555443
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.6e-21 Score=204.73 Aligned_cols=274 Identities=10% Similarity=0.051 Sum_probs=203.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCCceeeEeecCCCCee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~ 163 (579)
+.++++++.++.|.+||..+++++..+..++. +.+++|+|||+++++++.|++|++||+ .+++.+.++. +...+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~ 225 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEAR 225 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcc
Confidence 67788888999999999999999877754554 899999999999999999999999999 8899888888 455689
Q ss_pred EEEEcc----CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 164 ~l~~~p----~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h----------~-~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
+++|+| ||+++++++ ++|.+||..+++++.++..+ . ..+.++.++|+++.++++...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 999999 999999887 89999999999998888642 2 36889999998887777777899999
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccCCceEEee--eccc
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSS--SEDV 302 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~ 302 (579)
+||+.+.+.. .+..+.+ ......+.|+ |+|+++++++ .+++|.+||..+++.+.........-. ....
T Consensus 306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999886543 2223333 3345566777 9999877665 589999999999987765432100000 0000
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCC------CCceeEEEecCCCCcEEEeecCCcceeecccc-------
Q 008058 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS------- 369 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s------- 369 (579)
+.+++. ...++++.. ++.+.+..-.. ...+.+++.+|...+..++++|||++| .+++
T Consensus 377 ~~p~~g---~~~~s~~~~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~~ 446 (543)
T 1nir_A 377 VHPKYG---PVWSTSHLG------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDAR 446 (543)
T ss_dssp EETTTE---EEEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSHH
T ss_pred CCCCCc---cEEEeccCC------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCcc
Confidence 123322 133444321 22333322111 156788999998889999999999999 7665
Q ss_pred ceecccceeeee
Q 008058 370 LLKSKRGRYVQN 381 (579)
Q Consensus 370 ~d~~~~~w~~~~ 381 (579)
.+++|.+|++.+
T Consensus 447 ~~~~v~v~d~~~ 458 (543)
T 1nir_A 447 ISQSVAVFDLKN 458 (543)
T ss_dssp HHTCEEEEETTC
T ss_pred cCceEEEEECCC
Confidence 378999999853
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.2e-20 Score=187.73 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=185.5
Q ss_pred eEEEEccCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 9 ILTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++|+|+|+++++++. ++.|.+||..+++....+.... . ...+.|.+.
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~------------------~~~~~~s~d----- 99 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-K------------------PFGATINNT----- 99 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-C------------------CCSEEEETT-----
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-C------------------cceEEECCC-----
Confidence 34599999998888774 5689999999999887775321 1 223444433
Q ss_pred cccCCcEEE-EEECCCeEEEEEccCCeEEEEecCCCCC--------CEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCc
Q 008058 82 RKLGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGS 150 (579)
Q Consensus 82 ~~~~~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~--------~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~ 150 (579)
+..++ ++..++.|.+||+.+++.+..+..++.. .+.+++|+|+|+++++++ .++.|.+||+.+++
T Consensus 100 ----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 100 ----TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp ----TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred ----CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 55444 4455789999999999987666432222 278999999999887776 47899999999999
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
.+..+..+...+.+++|+|+|+.+++++ +.|.+||..+++.+..+.. +...+..++|+|+++++++++..++.|
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 255 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEV 255 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence 9888875666788999999999998887 8999999999998877764 556688999999999888877566999
Q ss_pred EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccC
Q 008058 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 291 (579)
.+||+.+++.. ........ ..+.|+ |+|+++++++ .++.|.+||..+++.+....
T Consensus 256 ~~~d~~~~~~~-----~~~~~~~~--~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 256 LVVDTRNGNIL-----AKVAAPES--LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp EEEETTTCCEE-----EEEECSSC--CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCcEE-----EEEEcCCC--ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999887643 22222221 346666 8999777666 58999999999988776543
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=3.8e-21 Score=195.79 Aligned_cols=225 Identities=15% Similarity=0.118 Sum_probs=171.9
Q ss_pred CCEEEEEeCC------CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 17 g~~las~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+..+++++.+ ++|++||...+ ....+..|...+..+.|+++ +..|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd---------------------------g~~la 194 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD---------------------------GSKLA 194 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT---------------------------SSEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC---------------------------CCEEE
Confidence 6677777654 79999999744 34555545444444444443 78899
Q ss_pred EEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeE
Q 008058 91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 91 ~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+++.++ .|++||+.+++.. .+ ..|...+.+++|+|||+.|+ +++.++. |++||+.+++. ..+..|...+.+
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 998875 8999999999875 33 45778999999999999877 6666654 99999988776 566778889999
Q ss_pred EEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccc
Q 008058 165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSA 237 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~~~~~~~ 237 (579)
++|+|||+.|++++ + .|++||+.+++. ..+..|...+.+++|+|+|++|++++..+ ..|++||+.+++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-- 348 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-- 348 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence 99999999888765 2 788899988764 45666778899999999999999887542 58999999887632
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCce
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~ 285 (579)
.+..+. .+....|+ |+|++|++++.++ .|++||+..+.
T Consensus 349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 222222 55667787 9999999998877 89999987543
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=5.5e-21 Score=188.68 Aligned_cols=266 Identities=12% Similarity=0.039 Sum_probs=194.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccccc--cccccccccccccccccCccceEEeeecccccccccCCcEE-EEEEC
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG 94 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~ 94 (579)
+++++++.+++|++||..+++....+..... .+. .++|.+. +..+ +++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~~l~v~~~~ 54 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM------------------VPMVAPG---------GRIAYATVNK 54 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC------------------CEEECTT---------SSEEEEEETT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc------------------ceEEcCC---------CCEEEEEeCC
Confidence 4789999999999999999998877753221 122 3444332 5444 45556
Q ss_pred CCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCceeeEeecC
Q 008058 95 GGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 95 ~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
++.|.+||+.+++.+..+..++ ...+.+++|+|+|+++++++ .++.|++||+.+++.+..+..
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 7899999999998876654333 22577899999999998886 579999999999988877764
Q ss_pred CCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----------------
Q 008058 159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---------------- 222 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~---------------- 222 (579)
...+.+++|+|+|++++++++.|++||+.+++.+..+..+... ..+.|+|++++++.++..++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 4567889999999999988999999999999988777654411 12378999987766553333
Q ss_pred -------eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058 223 -------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 223 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
.|.+||+.+++.. .............+.|+ |+|++++++ ++.|++||+.+++.+....
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 277 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRVP---- 277 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred cccccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence 4689999887632 12222333344567777 999999888 7999999987765432110
Q ss_pred EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008058 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (579)
.+ ..+.+++|+|||+++ ++++.++.++
T Consensus 278 ---------------------------------------------------~~-~~~~~~~~s~dg~~l-~~~~~~~~i~ 304 (337)
T 1pby_B 278 ---------------------------------------------------LP-HSYYSVNVSTDGSTV-WLGGALGDLA 304 (337)
T ss_dssp ---------------------------------------------------CS-SCCCEEEECTTSCEE-EEESBSSEEE
T ss_pred ---------------------------------------------------CC-CceeeEEECCCCCEE-EEEcCCCcEE
Confidence 00 135678999999988 6667799999
Q ss_pred ceeee
Q 008058 376 GRYVQ 380 (579)
Q Consensus 376 ~w~~~ 380 (579)
+|++.
T Consensus 305 v~d~~ 309 (337)
T 1pby_B 305 AYDAE 309 (337)
T ss_dssp EEETT
T ss_pred EEECc
Confidence 99984
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1e-21 Score=214.71 Aligned_cols=333 Identities=9% Similarity=0.034 Sum_probs=204.7
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccccccccccccccccc-cccccCccceEEeeecccccccccCCcEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLE-REHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|+ |+.+++++.|+ | +||+.+|+.+ ..+..+..... .++..-. .......+.+++|.+. ..+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd----------~~~ 95 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCKFQTTDAFPSFRTLDAGR----------GLV 95 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-----------CCCEEEEETTT----------TEE
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhccccccccCceeEEECCC----------CeE
Confidence 777 66777888888 8 9999999873 33322211000 0000000 0000134566777653 224
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CceeeEeecCCCC---
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKG--- 161 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--- 161 (579)
+++ .++.|++||+.+++..... .+...+.+++|+|||++|+++ .|+.|++||+.+ ++.......+...
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 444 5699999999998775333 466778999999999999885 689999999988 7766544433332
Q ss_pred -----------eeEEEEccCCCEEEEEC-----------------------------------CeEEEEECCCCeeeEEe
Q 008058 162 -----------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 162 -----------v~~l~~~p~g~~l~~~~-----------------------------------g~i~vwd~~~~~~~~~~ 195 (579)
+.+++|+|||++|++++ ..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 48999999999998874 57999999998765443
Q ss_pred e--cCCCCEEEEEEecCCCEEEEEecCCC-----eEEEEEcCCCccccceeEEeeecCce--eeEeEEecCCcccC--CC
Q 008058 196 S--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDD--AG 264 (579)
Q Consensus 196 ~--~h~~~v~~l~~~~~~~~l~s~s~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 264 (579)
. .|...+.+++|+|||+++++++ .++ .|++||+.+++.. ..+....+... .+..+.|+ | +|
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~s-----p~~dg 323 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFV--RTLFVETDKHYVEPLHPLTFL-----PGSNN 323 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEE--EEEEEEECSSCCCCCSCCEEC-----TTCSS
T ss_pred cCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCcee--eEEEEccCCCeECccCCceee-----cCCCC
Confidence 2 4667899999999999998876 355 8999999987322 12222122111 12445676 8 99
Q ss_pred cEEEEEEcCCeEEEEECC-CceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeE
Q 008058 265 LYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ 343 (579)
Q Consensus 265 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 343 (579)
+++++++.||.+++|.++ ++..+..+......+.....++++++ .++.++.+.. .....++...-.. . ..+
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~~-~-~~~ 395 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIKG-G-KTK 395 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETTC-C-CCE
T ss_pred EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcCC-C-Cce
Confidence 999999999999999876 45544444332222221112567766 4444433210 0012344433211 1 122
Q ss_pred EEecCCCCcEEEeecCCcceeeccccce---ecccceeeee
Q 008058 344 KILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQN 381 (579)
Q Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~~ 381 (579)
.+ .|...+.+++|||||+++.++++.+ ..+++|++.+
T Consensus 396 ~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 396 DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 22 3666789999999999884444433 4588998753
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=7.5e-21 Score=183.67 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=157.0
Q ss_pred EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008058 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (579)
Q Consensus 23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd 102 (579)
++.|++|++||..+++.... ..+...+ .++.|.+. +.++++++ ++.|++||
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~-~~~~~~v------------------~~~~~spd---------g~~l~~~~-~~~i~~~d 68 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVV-WQTPELF------------------EAPNWSPD---------GKYLLLNS-EGLLYRLS 68 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEE-EEESSCC------------------EEEEECTT---------SSEEEEEE-TTEEEEEE
T ss_pred CCcceeEEEEeCCCCceeee-ccCCcce------------------EeeEECCC---------CCEEEEEc-CCeEEEEe
Confidence 45689999999998887643 3333333 34555443 67777776 88999999
Q ss_pred ccC-CeEEEEecCCC-CCCEEEEEEccCCCEEEEEe--CCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEE-
Q 008058 103 VSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA- 175 (579)
Q Consensus 103 ~~~-~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~--~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~- 175 (579)
+.+ ++..... ..| ...+.+++|+|+|++|++++ .++. |..|++.+++ ...+..+ ..+.+++|+|+|+.++
T Consensus 69 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~ 145 (297)
T 2ojh_A 69 LAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY 145 (297)
T ss_dssp SSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence 999 7765443 344 47889999999999999998 3344 4455555554 3444433 3589999999999887
Q ss_pred EEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEe
Q 008058 176 TAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 176 ~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (579)
++. +.+++|++.. +.....+..|...+.++.|+|+++++++++..++.+++|++..... ....+..+...+..
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS----SVERITDSAYGDWF 221 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS----CEEECCCCSEEEEE
T ss_pred EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC----CcEEEecCCcccCC
Confidence 443 7888887532 2344567778889999999999999888775688999999863221 12334444556667
Q ss_pred EEecCCcccCCCcEEEEEEcC-----------CeEEEEECCCc
Q 008058 253 RCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNI 284 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~ 284 (579)
..|+ |+|++|++++.+ +.|++||++++
T Consensus 222 ~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 222 PHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred eEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 7887 999999998876 46888887654
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3e-20 Score=183.84 Aligned_cols=272 Identities=14% Similarity=0.155 Sum_probs=178.4
Q ss_pred EEEEEeCCCcEEEEECC-CCe--EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 19 YFAICSGDARIKIWDTL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 19 ~las~s~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+++++.|+.|++|++. ++. ....+. +.. ...+++|.+. +..+++++.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~spd---------g~~l~~~~~~ 58 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG------------------QVQPMVVSPD---------KRYLYVGVRP 58 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS------------------CCCCEEECTT---------SSEEEEEETT
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC------------------CCceEEECCC---------CCEEEEeecC
Confidence 34444779999999985 343 222221 222 2334555443 6778888876
Q ss_pred -CeEEEEEcc--CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCC---CCceeeEeecCCCCeeEEE
Q 008058 96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 96 -g~i~iwd~~--~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~ 166 (579)
+.|.+|++. +++. +..+ ..+ ..+.+++|+|+|+++++++. ++.|++||+. .++....+.. ...+.+++
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCE
T ss_pred CCeEEEEEecCCCCceeecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEE
Confidence 899999998 5553 2233 223 37899999999998877664 8899999994 3344455543 34688999
Q ss_pred EccCCCEEEEEC---CeEEEEECCC-CeeeE----Eeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC--Cccc
Q 008058 167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ 235 (579)
Q Consensus 167 ~~p~g~~l~~~~---g~i~vwd~~~-~~~~~----~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~--~~~~ 235 (579)
|+|+|+++++++ +.|++||+.+ ++... .+.. ....+..++|+|+++++++++..++.|.+|++.. ++..
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999877765 8999999987 64432 2332 3457889999999998877765789999999964 3221
Q ss_pred cceeEEeeecC---ceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC--ceeecccCCceEEeeecccCcccccc
Q 008058 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN--IEELRNTKATKILSSSEDVNSKSQKS 309 (579)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (579)
........... ......+.|+ |+|++|+++. .++.|.+||+.. +.. . .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~~~-~-------~------------- 269 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVL-S-------K------------- 269 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCE-E-------E-------------
T ss_pred EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCCce-E-------E-------------
Confidence 00011111111 1233456777 9998887555 689999999752 110 0 0
Q ss_pred cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
...+..+. .+..++|+|||++|.+++..++.+.+|++.
T Consensus 270 --------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 270 --------------------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --------------------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --------------------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 00111122 267789999999884555578999999774
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=4.6e-20 Score=181.83 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=169.1
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++|+|||+++++++. ++.|.+||..+++. ...+..+..+... +.|.+. +.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~s~d---------g~ 96 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD------------------VDITPD---------DQ 96 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC------------------EEECTT---------SS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc------------------eEECCC---------CC
Confidence 5699999997777765 88999999999886 5555433322222 344332 67
Q ss_pred EEEEEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEeCCCCcee----eEeecC
Q 008058 88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLL----GKFRAS 158 (579)
Q Consensus 88 ~l~~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~-v~iwd~~~~~~~----~~~~~~ 158 (579)
+++++..++ .|.+||+.+++.+..+. +.....+++|+|+|++++++ ..++. |.+|++.....+ ......
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence 777555553 89999999999876653 33567999999999866655 45588 999998754332 122233
Q ss_pred CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
...+.+++|+|+|+++++++ +.|++||+.+++. +..+..+ ..+..++|+|+|+++++++..++.|.+||+.++
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 45689999999999665554 7999999999887 7777744 567899999999988777656789999999887
Q ss_pred ccccceeEEeeecC----ce---eeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCce
Q 008058 233 KKQSASCVLAMEHP----AV---FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~ 285 (579)
+.. .+...... .. ....+.|+ |+|++|++++. ++.|.+||+.+..
T Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence 642 11111111 11 11335676 99999877665 6699999987654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.1e-19 Score=179.81 Aligned_cols=239 Identities=11% Similarity=0.124 Sum_probs=164.2
Q ss_pred EEEEccCCCEEEEEeCC-CcEEEEECC--CCeEE--EEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 10 LTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fs~dg~~las~s~d-g~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+++|+|+|++|++++.+ +.|.+|++. ++... ..+..+. ....++|.+.
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~d-------- 94 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-------------------SLTHISTDHQ-------- 94 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-------------------CCSEEEECTT--------
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-------------------CCcEEEEcCC--------
Confidence 45999999999998876 999999987 55532 3332211 2344555543
Q ss_pred CCcEEEEEEC-CCeEEEEEcc---CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cceee----E
Q 008058 85 GSSLLVLGTG-GGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG----K 154 (579)
Q Consensus 85 ~~~~l~~~~~-~g~i~iwd~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~----~ 154 (579)
+..+++++. ++.|.+||+. +.+....+ . ....+.+++|+|+|+++++++ .++.|++||+.+ ++... .
T Consensus 95 -g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 171 (343)
T 1ri6_A 95 -GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 171 (343)
T ss_dssp -SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred -CCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence 666666654 7889999994 33444333 2 334689999999999888887 899999999987 65432 2
Q ss_pred eecC-CCCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEee----cC--CCCEEEEEEecCCCEEEEEecC
Q 008058 155 FRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 155 ~~~~-~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~--~~~--~~~~~----~h--~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
+..+ ...+.+++|+|+|+++++++ +.|.+||+.. ++. ...+. ++ ...+..++|+|+++++++++..
T Consensus 172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence 2322 34788999999999776543 8999999953 432 22222 11 2356789999999988866657
Q ss_pred CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEEC--CCce
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG--QNIE 285 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~~~ 285 (579)
++.|.+|++...... ...+........ ...+.|+ |+|++|++++ .++.+.+|++ ++++
T Consensus 252 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 252 ASLITVFSVSEDGSV-LSKEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp TTEEEEEEECTTSCC-EEEEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCEEEEEEEcCCCCc-eEEeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 899999999832111 112333333333 5567777 9999998888 5899999954 4553
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=8.2e-21 Score=216.16 Aligned_cols=267 Identities=11% Similarity=-0.025 Sum_probs=186.2
Q ss_pred cEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--------
Q 008058 87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-------- 157 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------- 157 (579)
.++++++.+|.+.+|.+.. +.....+ ..|. .+...+|+|||++++++ .++.|++||+... .+..+..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~ 290 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED 290 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence 4555666778888888764 3333233 3343 46677999999998887 5899999998443 3335544
Q ss_pred ---CCCCeeEEEEc-cCCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-CEEEEEEecCCCEEEEEecCCCeEE-EEEcC
Q 008058 158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD 230 (579)
Q Consensus 158 ---~~~~v~~l~~~-p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~~d~~i~-vwd~~ 230 (579)
|...+.+++|+ |||+.+++++ +.|++|++.+++.. .+..|.. .+..++|+ +|+.+++++ .++.+. +|++.
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~ 367 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR 367 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence 23468999999 9999999887 99999999887644 4667777 89999999 999999987 577888 89988
Q ss_pred CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
.++.. .+..+...+..+.|+ |||++|++++.++.|++||+.+++...........+... .|+|+++
T Consensus 368 ~~~~~------~l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~-~~SpDG~-- 433 (1045)
T 1k32_A 368 TGKAE------KFEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF-TISDNSR-- 433 (1045)
T ss_dssp TCCEE------ECCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE-EECTTSC--
T ss_pred CCCce------EecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce-EECCCCC--
Confidence 76532 222344456677787 999999999999999999999887654332221111111 2678887
Q ss_pred chhhhhccccc--e-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058 311 TAAIFAAKLQD--I-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 311 ~~~i~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.++.++.++ . ....+..+.+..-. .. ....+..|...+..++|+|||++| +.++.++..+.|+.
T Consensus 434 --~la~~~~~~~~~~~~~~~~~i~l~d~~-~g-~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 434 --FIAYGFPLKHGETDGYVMQAIHVYDME-GR-KIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR 500 (1045)
T ss_dssp --EEEEEEEECSSTTCSCCEEEEEEEETT-TT-EEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred --eEEEEecCccccccCCCCCeEEEEECC-CC-cEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence 666655432 0 00012334443321 12 245666788888999999999999 77777777787865
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=5.1e-20 Score=209.61 Aligned_cols=242 Identities=12% Similarity=0.037 Sum_probs=182.3
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEee-ecccccccccCCcE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~ 88 (579)
..+|||||++|+++. ++.|.+||....... .+..+..... ..+ ......+..+.|. |. +..
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~-~~~------~~~~~~v~~~~~S~pd---------G~~ 310 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESP-EDR------IISIPSKFAEDFSPLD---------GDL 310 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBC-CSE------EEECGGGGEEEEEECG---------GGC
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccccc-ccc------cccccccceeeecCCC---------CCE
Confidence 459999999999885 899999999544433 4443211000 000 0012245677887 54 566
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCC-CEEEEEEccCCCEEEEEeCCCcEE-EEeCCCCceeeEeecCCCCeeEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+++++ ++.|.+|+..+++.. .+ ..|.. .+.+++|+ ||+.+++++.++.+. +||+.+++.. .+..|...+.+++
T Consensus 311 la~~~-~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~ 385 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMG 385 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEE
T ss_pred EEEEE-cCEEEEEcCCCCceE-Ec-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeE
Confidence 77776 889999999988764 33 45777 89999999 999999998888898 9998877654 3447778999999
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC---------CeEEEEEcCCCccc
Q 008058 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ 235 (579)
Q Consensus 167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d---------~~i~vwd~~~~~~~ 235 (579)
|+|||++|++++ +.|++||+.+++....+.+|...+.+++|+|||++|++++..+ +.|++||+.+++.
T Consensus 386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~- 464 (1045)
T 1k32_A 386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI- 464 (1045)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-
T ss_pred ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-
Confidence 999999999887 7999999999988877778999999999999999998887422 4899999988652
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
..+..+........|+ |+|++|++++.++...+|+.....
T Consensus 465 -----~~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 465 -----FAATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp -----EECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSC
T ss_pred -----EEeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhccc
Confidence 2333334444556777 999999999998888888865443
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=5.5e-20 Score=177.55 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=164.9
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..| .+++|+|||++|++++ ++.|++||+.+ ++.......+. ...+.++.|.+.
T Consensus 42 ~~v--~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spd------ 95 (297)
T 2ojh_A 42 ELF--EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-----------------TICNNDHGISPD------ 95 (297)
T ss_dssp SCC--EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-----------------CCBCSCCEECTT------
T ss_pred cce--EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-----------------cccccceEECCC------
Confidence 456 4569999999999987 78999999998 77665443321 123344555543
Q ss_pred ccCCcEEEEEEC--CCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCC-CCceeeEee
Q 008058 83 KLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPL-TGSLLGKFR 156 (579)
Q Consensus 83 ~~~~~~l~~~~~--~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~-~~~~~~~~~ 156 (579)
+..+++++. ++. |..|+..++... .+ . +...+..++|+|+|++|+ +++.++.+++|++. .+.....+.
T Consensus 96 ---g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 96 ---GALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ---SSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ---CCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 777888883 344 555555555532 33 2 233599999999999877 77789999999853 233445566
Q ss_pred cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------C
Q 008058 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------R 222 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d----------~ 222 (579)
.+...+.+++|+|+|+.++.++ +.+.+|++. .+..+..+..|...+..+.|+|++++|++++..+ +
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 6778899999999999877654 788888876 4556777888888899999999999998887421 5
Q ss_pred eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
.|++||+.+++.. .+.....+...+..+.|+ |+|++|++++.+.
T Consensus 250 ~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred EEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence 6999999887643 333333334445556676 9999999887754
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=7.4e-20 Score=181.59 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=175.4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+++++++.++++++.+++|++||..+++....+..+.. .....++|.+. +..++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~d---------g~~~~ 58 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPD---------NRTAY 58 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTT---------SSEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCC---------CCEEE
Confidence 37889999999999999999999999998877753320 01223444332 55444
Q ss_pred -EEECCCeEEEEEccCCeEEEEecCCC-----CCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCce-
Q 008058 91 -LGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL- 151 (579)
Q Consensus 91 -~~~~~g~i~iwd~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~- 151 (579)
++..++.|.+||+.+++....+...+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++.
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 45567899999999998876654333 2337889999999999998865 8999999988543
Q ss_pred --eeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCC------------------------------
Q 008058 152 --LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP------------------------------ 199 (579)
Q Consensus 152 --~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~------------------------------ 199 (579)
+..+. +...+.+++|+|+|+ ++++++.|++||..+++.+..+..+.
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred ceeeecc-CCCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 33444 334688999999999 66677779999999988776664331
Q ss_pred --------------------------------------CCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 200 --------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 200 --------------------------------------~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
..+..++|+| ++++++++ ++.|.+||+.+++..
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~----- 288 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI----- 288 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE-----
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE-----
Confidence 1345667789 99988876 679999999887633
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..+..... ...+.|+ |+|++|++++.++.|++||.++++.+..+
T Consensus 289 ~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 289 KAANLDHT-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEEECSSC-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCC-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 22222222 3456776 89999998888999999999998876544
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=6.7e-19 Score=174.86 Aligned_cols=242 Identities=11% Similarity=0.111 Sum_probs=161.0
Q ss_pred EEEEccCCCEEEEEeC---CCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 10 LTSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fs~dg~~las~s~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.++|+|||+ |++++. ++.|.+|++.++.. +..+..+...+ ..++|.+.
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p------------------~~~a~spd-------- 96 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP------------------AYVAVDEA-------- 96 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC------------------SEEEEETT--------
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC------------------EEEEECCC--------
Confidence 359999999 555543 68999999987763 23222222222 33444433
Q ss_pred CCcEEEEEE-CCCeEEEEEcc-CCe--EEEEecC-C-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCce
Q 008058 85 GSSLLVLGT-GGGDVLALAVS-AGQ--LKWRLSD-C-------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSL 151 (579)
Q Consensus 85 ~~~~l~~~~-~~g~i~iwd~~-~~~--~~~~~~~-~-------h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~ 151 (579)
++.|++++ .++.|.+|++. .+. .+..+.. + +...+.+++|+|+|+.+++...++.|++||+. +++.
T Consensus 97 -g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 97 -RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred -CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 77777777 67899999996 333 2222211 1 22358999999999966666678899999998 5543
Q ss_pred ee--EeecCC-CCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEeecCC------CCEEEEEEecCCCEEE
Q 008058 152 LG--KFRAST-KGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVL 215 (579)
Q Consensus 152 ~~--~~~~~~-~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~--~~~--~~~~~~h~------~~v~~l~~~~~~~~l~ 215 (579)
.. .+..+. ..+..++|+|||+++++++ +.|.+|++.. ++. +..+.... ..+..++|+|+|++|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 32 223332 3678999999999776654 7999999874 543 33333332 3488999999999886
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEE--ECCCcee
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW--YGQNIEE 286 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iw--d~~~~~~ 286 (579)
+++..++.|.+|++..... ...+.....+......+.|+ |+|++|++++. ++.|.+| |.++++.
T Consensus 256 v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGH--LTLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEETTTEEEEEEECGGGC--EEEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEeCCCCEEEEEEECCCCc--EEEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 6655789999999974321 11333333333445567777 99999988876 4899999 4555654
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=6.9e-20 Score=201.33 Aligned_cols=281 Identities=7% Similarity=-0.005 Sum_probs=195.0
Q ss_pred ccceEEeeecccccccccCCcEEEEEEC-CC-----eEEEEEccCCeEEEEecCCCC-----------------------
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP----------------------- 117 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g-----~i~iwd~~~~~~~~~~~~~h~----------------------- 117 (579)
....+.|.+. ++.|++++. ++ .|++||+.+++....+ ..+.
T Consensus 38 ~~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 38 TLMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------C
T ss_pred CCCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhcc
Confidence 3556777664 788999888 88 8999999999876444 2232
Q ss_pred -CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008058 118 -GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 118 -~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~ 193 (579)
..|.+++|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|+.++ +.|++||+.+++...
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence 23789999999999999876 999999998873 4455666778899999999999999888 899999999987665
Q ss_pred EeecCCCC----------------EEEEEEecCCCEEEEEecCCC---------------------------------eE
Q 008058 194 KFSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YI 224 (579)
Q Consensus 194 ~~~~h~~~----------------v~~l~~~~~~~~l~s~s~~d~---------------------------------~i 224 (579)
....+... +..+.|+|||++|++++. |+ .|
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 44444432 477999999999998873 44 78
Q ss_pred EEEEcCC-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-----CCeEEEEECCCceeecccCCceEE--
Q 008058 225 ALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL-- 296 (579)
Q Consensus 225 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~-- 296 (579)
.+||+.+ ++.. .+.....+...+..+.| |||++|++++. ++.|++||+.+++...........
T Consensus 266 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 266 GVISPAEQAQTQ---WIDLGKEQDIYLARVNW------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp EEECSSTTCCCE---EECCCSCSSEEEEEEEE------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCceE---EecCCCCcceEEEEEEe------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 8899887 6532 11111122333444444 58898887764 568999999988754432211100
Q ss_pred -eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeecccccee--
Q 008058 297 -SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK-- 372 (579)
Q Consensus 297 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~-- 372 (579)
......|+++++ .+++++.++. ..++...-. .. ...+..|...+..+ .|||||+.+.++++.++
T Consensus 337 ~~~~~~~~spdg~----~~~~~~~~g~-----~~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 337 PLHNSLRFLDDGS----ILWSSERTGF-----QHLYRIDSK--GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp CCCSCCEECTTSC----EEEEECTTSS-----CEEEEECSS--SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred CcCCceEECCCCe----EEEEecCCCc-----cEEEEEcCC--CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence 001223677766 6666666552 233333211 12 55677787788887 59999998746666666
Q ss_pred cccceeee
Q 008058 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
.+++|.+.
T Consensus 405 ~~~l~~~~ 412 (741)
T 2ecf_A 405 ESQIYAVP 412 (741)
T ss_dssp CBEEEEEE
T ss_pred eEEEEEEE
Confidence 88999874
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1e-19 Score=185.95 Aligned_cols=210 Identities=12% Similarity=0.041 Sum_probs=152.4
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
++++++++.++++++.|+ ++||+........ ...........+.+. ..-+....+.+++|.+. +.+|
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spd---------g~~l 107 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--KPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCD---------NLTL 107 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--CTTCCTTCEEECCCC-EEECCSSCEEEEEECTT---------SCEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhc--ccccCcccccccCcc-ccccCCCcccEEEEcCC---------CCEE
Confidence 349999999999999888 8998754211000 000000000000000 00112345778888775 6677
Q ss_pred E----EEECCCeEEEEEccCC--------eE--EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058 90 V----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 90 ~----~~~~~g~i~iwd~~~~--------~~--~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (579)
+ +|+.|+.|++||+.++ +. ......+|...|++++|+|+ +.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 7 6777899999999765 11 12445679999999999998 78999999999999999999877777
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-------CCEEEEEEecCCCEEEEEecCCC---
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVGER--- 222 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~s~~d~--- 222 (579)
..+|...|++++|+|+|++|++|+ |.|++||.+ ++....+..|. ..|.++.|++++.++++.+..||
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 777888999999999999999998 899999998 55566665442 37999999999988876655554
Q ss_pred ---eEEEEEcCCCc
Q 008058 223 ---YIALWRTDGVK 233 (579)
Q Consensus 223 ---~i~vwd~~~~~ 233 (579)
.+++|+++..+
T Consensus 267 ~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 267 TSPDVVMALLPKKE 280 (434)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCCceEEEEeccCC
Confidence 38999998753
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=4.1e-18 Score=169.11 Aligned_cols=233 Identities=12% Similarity=0.091 Sum_probs=154.9
Q ss_pred CcEEEEEEC---CCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCc--eeeEee
Q 008058 86 SSLLVLGTG---GGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL-TGS--LLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~---~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~-~~~--~~~~~~ 156 (579)
+. +++++. ++.|.+|++.+++. +..+ ..+...+..++|+|+|++|++++ .++.|.+||+. ++. .+..+.
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~ 128 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ 128 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence 66 555544 57899999987764 2222 34667889999999999988887 78999999995 332 333332
Q ss_pred cC---------CCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCeee--EEeecC-CCCEEEEEEecCCCEEEEEecCC
Q 008058 157 AS---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGH-PGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 157 ~~---------~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~-~~~~~--~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
.. ...+.+++|+|+|+++++.. +.|++|++. +++.. ..+..+ ...+..++|+|||+++++++..+
T Consensus 129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS 208 (347)
T ss_dssp CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence 21 12488999999999555554 799999998 55432 223332 23678899999999888776678
Q ss_pred CeEEEEEcCC--CccccceeEEeeec-C-----ceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecccCC
Q 008058 222 RYIALWRTDG--VKKQSASCVLAMEH-P-----AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 222 ~~i~vwd~~~--~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
+.|.+|++.. ++.. ....... + ......+.|+ |+|++|+++ ..++.|.+|++.....+.
T Consensus 209 ~~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~---- 276 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT---- 276 (347)
T ss_dssp TEEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred CEEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence 9999999875 3211 1112211 1 1345667777 999988554 558999999975211000
Q ss_pred ceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008058 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~ 372 (579)
. ...+..+...+..++|+|||++|.+++..++
T Consensus 277 ---~---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 277 ---L---------------------------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp ---E---------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred ---E---------------------------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 0 0011123335678999999998844445568
Q ss_pred cccceeee
Q 008058 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
.+.+|++.
T Consensus 309 ~v~v~~~d 316 (347)
T 3hfq_A 309 NATLYARD 316 (347)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 89999763
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=5.7e-19 Score=174.13 Aligned_cols=240 Identities=10% Similarity=0.030 Sum_probs=174.9
Q ss_pred EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|||++++ +++.++.|.+||..+++....+....... .......+.|.+. +..
T Consensus 38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d---------g~~ 95 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD---------GKT 95 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT---------SSE
T ss_pred ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC---------CCE
Confidence 449999998765 45557899999999998877665321000 0011234445442 667
Q ss_pred EEEEE------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 89 LVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
++++. .++.|.+||+.+++.+..+.. ...+.+++|+|+|++++++ ++.|++||+.+++....+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred EEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 77776 579999999999988766532 3467889999999988888 6889999999998887776
Q ss_pred cCCCCeeEEEEccCCCEEEEEC---C-----------------------eEEEEECCCCeee-EEeecCCCCEEEEEEec
Q 008058 157 ASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFMTFSD 209 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~---g-----------------------~i~vwd~~~~~~~-~~~~~h~~~v~~l~~~~ 209 (579)
.+.. ...+.|+|+|+.++.++ + .|.+||+.+++.. ..+..+...+.+++|+|
T Consensus 172 ~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 250 (337)
T 1pby_B 172 IQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp STTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred cccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC
Confidence 5441 11237899998776554 2 4789999998764 33456677888999999
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 289 (579)
++++++++ ++.|.+||+.+++.. ..+.... ....+.|+ |+|++|++++.++.|++||+.+++.+..
T Consensus 251 dg~~l~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 251 AKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp TSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCCEEEEe---CCeEEEEECCCCcCc-----ceecCCC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence 99998876 589999999887633 2222222 23456676 9999999999999999999999877654
Q ss_pred c
Q 008058 290 T 290 (579)
Q Consensus 290 ~ 290 (579)
+
T Consensus 317 ~ 317 (337)
T 1pby_B 317 V 317 (337)
T ss_dssp E
T ss_pred E
Confidence 4
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=3.5e-18 Score=169.81 Aligned_cols=233 Identities=9% Similarity=0.093 Sum_probs=173.6
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+|++++.++ .++.|.+||..+++....+..+...... .........+.|.+. ++.
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~d---------g~~ 154 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE---------EVRPLQPRELVADDA---------TNT 154 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS---------SCCCCEEEEEEEETT---------TTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc---------ccCCCCCceEEECCC---------CCE
Confidence 449999999666554 5799999999999988777643221000 000011234566553 566
Q ss_pred EEEEE--CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCe
Q 008058 89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (579)
Q Consensus 89 l~~~~--~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v 162 (579)
++++. .++.|.+||+.+++.+..+. .+...+.+++|+|+|+++++++.++.|.+||+.+++....+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 66665 47889999999999886663 3455688999999999999999999999999999998887764 44568
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.+++|+|+|+.+++++ +.|.+||..+++.+..+..+.. ..++|+|+++++++++..++.|.+||..+++..
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---- 307 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---- 307 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence 8899999999777665 7999999999998888775432 579999999987777657899999999887643
Q ss_pred EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
..+.... ....+.|+ |+|++|+++..++
T Consensus 308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK 335 (353)
T ss_dssp -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence 2333333 34567777 9999888877664
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=199.34 Aligned_cols=327 Identities=10% Similarity=0.029 Sum_probs=195.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|+|||++++++ .|++|++||+.+++....+..+... ...+.++.|.|. ++.|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpD---------g~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPD---------RQFV 74 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTT---------SSEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCC---------CCeE
Confidence 45999999765554 6999999999999887666533221 011334455443 7888
Q ss_pred EEEEC---------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCC
Q 008058 90 VLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST 159 (579)
Q Consensus 90 ~~~~~---------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~ 159 (579)
++++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. ++.|++||+.+++..+.. .++.
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 88876 688999999999873111 1125688999999999999885 789999999888765432 2222
Q ss_pred CCe-----------------eEEEEccCCCEEEEEC--C----------------------------------eEEEEEC
Q 008058 160 KGI-----------------SCMAVSSDGKMLATAA--G----------------------------------QLKTFNC 186 (579)
Q Consensus 160 ~~v-----------------~~l~~~p~g~~l~~~~--g----------------------------------~i~vwd~ 186 (579)
..+ .+++|+|||+.|++++ . .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 222 4899999999999875 1 7889999
Q ss_pred CCCeee--------EEeecCCCCEEEEEEecCCCEEEEEecC-C--CeEEEEE----cCCCccccceeEEe--eecCcee
Q 008058 187 SDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA--MEHPAVF 249 (579)
Q Consensus 187 ~~~~~~--------~~~~~h~~~v~~l~~~~~~~~l~s~s~~-d--~~i~vwd----~~~~~~~~~~~~~~--~~~~~~~ 249 (579)
.+++.. ..+.+|...+..++|+||++.+++.... + ..|.+|| +.+++... +.. ...+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~---~~~~~~~~~~~~ 308 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK---TQEHIEESRTGW 308 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG---GGEEEEECSSSC
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE---EEecccccCCce
Confidence 987643 1234688889999999998766664321 2 2488899 76665331 111 0122222
Q ss_pred eE-----eEEecCCcccCCCcEEEE--EEcCC--eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058 250 MD-----CRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 250 ~~-----~~~~~~~~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
+. ...|+ |||+.++. ...+| .|++||+.+++.. .+......+.... +. +++ .|+..+.+
T Consensus 309 ~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~-~~-d~~----~i~~~~~~ 376 (719)
T 1z68_A 309 AGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIF-RV-TQD----SLFYSSNE 376 (719)
T ss_dssp SSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEE-EE-CSS----EEEEEESC
T ss_pred EccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEE-EE-eCC----EEEEEEec
Confidence 22 45676 99986654 44555 5777777666522 2211111111111 12 333 33333222
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEe----cCCCCcEEEeecCCcceeeccccce--ecccceee
Q 008058 321 DIVKPASVHTFVAYGLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYV 379 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d--~~~~~w~~ 379 (579)
+........++......-....+.+. +|...+..+.|||||+++.++++.+ ..+.+|++
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 00000122333332100000112222 2556678899999999885555544 34566766
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=6.9e-18 Score=168.52 Aligned_cols=239 Identities=14% Similarity=0.129 Sum_probs=158.2
Q ss_pred EEEccCCCEEEEEeCC----CcEEEEECCC--CeEEE--EeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 11 TSFSPALDYFAICSGD----ARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 11 ~~fs~dg~~las~s~d----g~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++|+|||++|++++.+ +.|.+|++.. |.... ....+ ......+.+ +
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------~~~p~~~~~---d----- 108 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------GADPCYLTT---N----- 108 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------SSCEEEEEE---C-----
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------CCCcEEEEE---C-----
Confidence 4999999999999875 7999998765 54322 22111 111122233 2
Q ss_pred ccCCcEEEEEE-CCCeEEEEEccCCeEEEEe-----cC--------CCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008058 83 KLGSSLLVLGT-GGGDVLALAVSAGQLKWRL-----SD--------CHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (579)
Q Consensus 83 ~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~-----~~--------~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~ 147 (579)
+..++++. .++.|.+|++.....+... .. .+...+.+++|+|+|+++++++ .++.|++|++.
T Consensus 109 ---g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 109 ---GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp ---SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence 55566665 5788999999754322111 01 1233468999999999776665 58899999887
Q ss_pred CCce------e------eE-eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEee---cCCCCEEEEE
Q 008058 148 TGSL------L------GK-FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFMT 206 (579)
Q Consensus 148 ~~~~------~------~~-~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~--~~~~~---~h~~~v~~l~ 206 (579)
.... + .. ...+...+.+++|+|||+++++++ +.|.+||+.+++. +..+. .+......++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence 5431 1 11 222345688999999999777655 7999999987754 33332 3345578999
Q ss_pred EecCCCEEEEEecC-CCeEEEEEcCC--CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEE--
Q 008058 207 FSDNGKYVLSSAVG-ERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY-- 280 (579)
Q Consensus 207 ~~~~~~~l~s~s~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd-- 280 (579)
|+|||++|+++... ++.|.+|++.. ++.. .+..... ......+.|+ |+|++|++++ .++.|.+|+
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEEE
Confidence 99999999877755 58999999963 3321 2223333 3344567777 9999999888 578999965
Q ss_pred CCCceee
Q 008058 281 GQNIEEL 287 (579)
Q Consensus 281 ~~~~~~~ 287 (579)
.++++..
T Consensus 337 ~~~g~~~ 343 (361)
T 3scy_A 337 QATGLLT 343 (361)
T ss_dssp TTTCCEE
T ss_pred CCCCcEe
Confidence 4466543
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=8.6e-19 Score=186.95 Aligned_cols=233 Identities=13% Similarity=0.089 Sum_probs=160.6
Q ss_pred CcccceEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.|| .+++|+|||++||+++. ||+++||++.++.... +..+. ..+....|+ |
T Consensus 22 ~~~--~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~s------------------p------ 74 (582)
T 3o4h_A 22 VEK--YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYG------------------V------ 74 (582)
T ss_dssp SCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTT------------------C------
T ss_pred cch--heeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCC------------------C------
Confidence 467 56699999999999887 9999999997666543 33332 233333333 2
Q ss_pred cccCCcEEEEEEC---CCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE
Q 008058 82 RKLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~---~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~ 154 (579)
..++++++. +....+|.+.. +... .+.. ...+...+|+|+|+. +++.+.++.+.+||+.+++....
T Consensus 75 ----d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 75 ----GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp ----SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred ----CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 234555554 34455655543 2222 3322 223456688888864 33444455566999998876655
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEE
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL 226 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~v 226 (579)
...+. .+++|+|||+++++++ +.|++||+.+++.. .+.+|...+..++|+|||++|+++. .++ .|++
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~ 222 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVT 222 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEE
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEE
Confidence 54333 8899999999999765 46999999888754 6788989999999999999999655 688 8999
Q ss_pred EEcCCCccccceeEEeeecCceeeEeEE--------ecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 227 WRTDGVKKQSASCVLAMEHPAVFMDCRC--------IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
||+.+++.. .+..+...+.... |+ |||..+++++.||++++|++ ++...
T Consensus 223 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 223 VDPRDGSVE------DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp ECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred EcCCCCcEE------EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 999887522 2222222222233 66 99988999999999999999 66554
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=2e-18 Score=188.63 Aligned_cols=254 Identities=13% Similarity=0.104 Sum_probs=176.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+.+..+ +|||||++||++ .|+.|++||+.+ ++.......+...+. ...+....+ .....++.|.|.
T Consensus 121 ~~~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~ee-~~~~~~~~~SpD-- 191 (706)
T 2z3z_A 121 EETASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV---YGQAVHQRE-FGIEKGTFWSPK-- 191 (706)
T ss_dssp TCCTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE---ESSCCGGGC-TTCCCSEEECTT--
T ss_pred ccccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE---cccchhhhh-cCCCceEEECCC--
Confidence 345444 999999999996 589999999988 776543332221110 000000000 112345667664
Q ss_pred ccccccCCcEEEEEE---------------------------------CCCeEEEEEccCCeEEEEec-CCCCCCEEEEE
Q 008058 79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS 124 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~---------------------------------~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~ 124 (579)
++.|++++ .++.|++||+.+++...... ..|...+.+++
T Consensus 192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 67788877 34669999999988653332 25677899999
Q ss_pred EccCCCEEEEEeCCC-----cEEEEeCCCCceeeEee-c-CCC---CeeEEEEcc--CCCEEEEEC--CeEEEEECC-CC
Q 008058 125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH 189 (579)
Q Consensus 125 ~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~p--~g~~l~~~~--g~i~vwd~~-~~ 189 (579)
|+|||++|++++.++ .|++||+.+++....+. . +.. .+.+++|+| ||+++++++ +.+++|++. ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 999999999988776 89999999984433332 2 222 246789999 999998887 778888775 66
Q ss_pred eeeEEeecCCCCEEE-EEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC
Q 008058 190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 190 ~~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
+.+..+..|...+.. +.|+|+++.|+.++..++ .|..||+.+++.. .+.+.. .+..+.|+ |+|
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~-~~~~~~~s-----pdg 412 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPES-GMHRTQLS-----PDG 412 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSS-SEEEEEEC-----TTS
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCC-ceEEEEEC-----CCC
Confidence 777888888888887 799999998887775555 6777777765422 222333 34567787 999
Q ss_pred cEEEEEEcC----CeEEEEECCCce
Q 008058 265 LYVLAISET----GVCYIWYGQNIE 285 (579)
Q Consensus 265 ~~l~s~~~d----g~i~iwd~~~~~ 285 (579)
++++..+.+ +.+++||..+++
T Consensus 413 ~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 413 SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CEEEEEecCCCCCcEEEEEECCCCe
Confidence 998877554 569999998876
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=1.6e-18 Score=189.97 Aligned_cols=237 Identities=11% Similarity=0.053 Sum_probs=166.0
Q ss_pred eEEEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEecccc---ccccccccccccccccccCccceEEeeec
Q 008058 9 ILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIA---STETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
.+++|||||++|++++.+ +.|.+||+.+++. ..+.... ..+....|+++
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd------------------ 124 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK------------------ 124 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS------------------
T ss_pred ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC------------------
Confidence 455999999999999864 7788999998876 3333221 12334444444
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC------------------EEEEEEccCCCEEEEEeCC
Q 008058 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSAGAD 138 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~------------------V~~l~~~~~~~~l~s~~~d 138 (579)
++.|++++. +.|++||+.+++..... ..+... +.+++|+|||++|++++.|
T Consensus 125 ---------G~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 125 ---------GQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp ---------TTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ---------CCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 777888876 79999999998876444 333333 3789999999999988755
Q ss_pred C----------------------------------cEEEEeCCCCceeeEeecC------CCCeeEEEEccCCCEEEEEC
Q 008058 139 G----------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 139 g----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~g~~l~~~~ 178 (579)
+ .|++||+.+++....+..+ ...+.+++|+|||+++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 3 7999999988765666554 55789999999999887653
Q ss_pred ------CeEEEEECCCCeeeEEeec-CCCCEE----EEEEecCCCEEEEE-ecCCC------eEEEEE-cCCCcccccee
Q 008058 179 ------GQLKTFNCSDHKKMQKFSG-HPGAVR----FMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKKQSASC 239 (579)
Q Consensus 179 ------g~i~vwd~~~~~~~~~~~~-h~~~v~----~l~~~~~~~~l~s~-s~~d~------~i~vwd-~~~~~~~~~~~ 239 (579)
..|++||+.+++....+.. +...+. .++|+|||+.|+.. +..++ .|.+|| ...+... +
T Consensus 274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~ 350 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---N 350 (723)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---C
T ss_pred cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---c
Confidence 4799999999987666543 334443 78999999977764 44577 566677 3333300 0
Q ss_pred EEeee-cCceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCC
Q 008058 240 VLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~ 283 (579)
...+. +.........|+ |+|++|+..+.+ +.+++|+++.
T Consensus 351 ~~~l~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 351 IQSITSGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCBSCCSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeEeecCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11222 233334445777 999999877665 7899998764
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.6e-17 Score=166.06 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=161.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccc-cccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
..++|+|||++|++++.+ .|.+|++. +++........ .+....+.++++ +
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g 94 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------T 94 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------C
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------C
Confidence 456999999999999887 99999997 78765433211 011233444444 5
Q ss_pred cE--EEEEE-------------CCCeEEEEEcc-CCeEEEEec---CCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeC
Q 008058 87 SL--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDP 146 (579)
Q Consensus 87 ~~--l~~~~-------------~~g~i~iwd~~-~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~ 146 (579)
+. ++++. .+|.+.+|++. .++....+. ..+...+.+++|+|||+++++++. ++.|++||+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 53 33442 68899999997 465433221 135567999999999999887764 679999999
Q ss_pred C-CCcee--eEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCeee---EEee-------cCCC------
Q 008058 147 L-TGSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------ 200 (579)
Q Consensus 147 ~-~~~~~--~~~~--~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~~~~---~~~~-------~h~~------ 200 (579)
. +++.. ..+. .+...+..++|+|||+++++++ +.|.+|++. +++.. ..+. +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 8 67653 3343 2356789999999999888765 789999765 55542 1222 1222
Q ss_pred CEEEEE-EecCCCEEEEEecCCC-----eEEEEEcC-CCccccceeEE-eeecCceeeEeEEecCCcccC---CCcEEEE
Q 008058 201 AVRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLA 269 (579)
Q Consensus 201 ~v~~l~-~~~~~~~l~s~s~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~s 269 (579)
.+..++ |+|||++|+++...++ .|.+|++. +++.. .+. ...........++|+ | +|++|++
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v 326 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAI 326 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEE
Confidence 488999 9999999887653333 89999996 34321 111 122222223344555 8 8999999
Q ss_pred EEc-CCeEEEEECCCc
Q 008058 270 ISE-TGVCYIWYGQNI 284 (579)
Q Consensus 270 ~~~-dg~i~iwd~~~~ 284 (579)
++. ++.|.+|+++..
T Consensus 327 ~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 327 TDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSSCEEEEEEEETT
T ss_pred EEcCCCeEEEEEEchh
Confidence 987 489999998665
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.5e-17 Score=182.22 Aligned_cols=248 Identities=10% Similarity=0.007 Sum_probs=169.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|+|||++++++ ||+|++||+.++++...+..+........ .....|.|. ++.
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~Spd---------g~~ 75 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHS-------------INDYSISPD---------GQF 75 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSC-------------CCEEEECTT---------SSE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhccc-------------ccceEECCC---------CCE
Confidence 456999999999886 99999999999998777765543221111 111333332 778
Q ss_pred EEEEECC---------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecC
Q 008058 89 LVLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (579)
Q Consensus 89 l~~~~~~---------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~ 158 (579)
|++++.+ +.+.+||+.+++.. .+ ..|.+.+...+|||||+.|+.+ .|+.|++||+.+++..+. ..++
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 8888875 66789999999875 33 4677889999999999999888 578999999988775442 2222
Q ss_pred CCCe-----------------eEEEEccCCCEEEEEC---C-----------------------------------eEEE
Q 008058 159 TKGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKT 183 (579)
Q Consensus 159 ~~~v-----------------~~l~~~p~g~~l~~~~---g-----------------------------------~i~v 183 (579)
...+ .++.|||||+.|+.+. + .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 2222 3589999999998763 1 5888
Q ss_pred EECCC---Ce--eeEEee------cCCCCEEEEEEecCCCEEEEEecC---CCeEEEEEcCCCc----cccceeEEeeec
Q 008058 184 FNCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEH 245 (579)
Q Consensus 184 wd~~~---~~--~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~~---d~~i~vwd~~~~~----~~~~~~~~~~~~ 245 (579)
||+.+ ++ ....+. +|...+..++|+|||+.++..... +..|.+||+.+++ ......+....+
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 99988 73 233343 377889999999999966655422 2379999998876 221111111222
Q ss_pred Ccee----eEeEEecCCcccCCCcEEE-EEEc-CC--eEEEEECCCceeec
Q 008058 246 PAVF----MDCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEELR 288 (579)
Q Consensus 246 ~~~~----~~~~~~~~~~~~~~~~~l~-s~~~-dg--~i~iwd~~~~~~~~ 288 (579)
...+ .....|+ |||+.|+ ..+. +| .|++||..+++..+
T Consensus 313 ~~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp SSCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 2211 1245566 9999887 6654 44 68888988765443
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.3e-16 Score=159.18 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=149.6
Q ss_pred EccCCCEEEEEeC----CCcEEEEEC--CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 13 FSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 13 fs~dg~~las~s~----dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
..+...+++.|+. ++.|.+|++ .+++.......+...+. .++|.+. +
T Consensus 9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~------------------~l~~spd---------g 61 (361)
T 3scy_A 9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS------------------YLIPSAD---------G 61 (361)
T ss_dssp GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC------------------SEEECTT---------S
T ss_pred hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc------------------eEEECCC---------C
Confidence 3445556777753 568999865 55654332221222222 3334332 7
Q ss_pred cEEEEEECC----CeEEEEEccC--CeEE--EEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEe--
Q 008058 87 SLLVLGTGG----GDVLALAVSA--GQLK--WRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKF-- 155 (579)
Q Consensus 87 ~~l~~~~~~----g~i~iwd~~~--~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~-- 155 (579)
++|++++.+ +.|.+|++.. ++.. ... ..+......+++ +++++++++ .++.|.+|++.....+..+
T Consensus 62 ~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 138 (361)
T 3scy_A 62 KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD 138 (361)
T ss_dssp SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE
T ss_pred CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce
Confidence 778888875 7899999876 4432 222 234556778888 888877776 6889999999754332211
Q ss_pred --e--c--------CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------e-------EEeecCCCCEEEEEE
Q 008058 156 --R--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------M-------QKFSGHPGAVRFMTF 207 (579)
Q Consensus 156 --~--~--------~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~------~-------~~~~~h~~~v~~l~~ 207 (579)
. + +...+.+++|+|+|+++++++ +.|++|++..... + .....+...+..++|
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (361)
T 3scy_A 139 VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF 218 (361)
T ss_dssp EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE
T ss_pred eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE
Confidence 1 1 122458899999999776654 7999998875431 1 112234456789999
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC--CeEEEEECC
Q 008058 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ 282 (579)
Q Consensus 208 ~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~ 282 (579)
+|+|+++++++..++.|.+|++.+++...................+.|+ |+|++|++++.+ +.|.+|+++
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEc
Confidence 9999988887756899999999866432111111111222233567777 999999777664 899999874
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.7e-17 Score=169.38 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=142.2
Q ss_pred CcccceEEEEccCCCEEE----EEeCCCcEEEEECCCC--------eE---EEEeccccccccccccccccccccccCcc
Q 008058 4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QV---QTEFADIASTETTSLYGNRLEREHLSVDY 68 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~la----s~s~dg~i~vwd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (579)
++| .+++|+|+|++|| +|+.|++|+|||+.++ +. ...+. +| ...+
T Consensus 93 ~~v--~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~h-~~~V 152 (434)
T 2oit_A 93 FPI--HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-----------------DA-GGMV 152 (434)
T ss_dssp SCE--EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-----------------SG-GGSE
T ss_pred Ccc--cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-----------------CC-CCce
Confidence 357 5669999999999 7888999999998654 11 22222 23 2356
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 148 (579)
.+++|.+.+ +.++++++.||.|++||+.++...... .+|...|++++|+|+|++|++|+.||+|++||++
T Consensus 153 ~~v~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~- 222 (434)
T 2oit_A 153 IDMKWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT- 222 (434)
T ss_dssp EEEEECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred EEEEECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence 677887754 678999999999999999998765444 4688999999999999999999999999999998
Q ss_pred CceeeEeecCC-------CCeeEEEEccCCCEEEEEC---C------eEEEEECCCCe-----eeEEee-------cCCC
Q 008058 149 GSLLGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHK-----KMQKFS-------GHPG 200 (579)
Q Consensus 149 ~~~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~---g------~i~vwd~~~~~-----~~~~~~-------~h~~ 200 (579)
++....+..|. ..|.+++|++++.++++.+ | .+++|+++..+ ....+. +...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 302 (434)
T 2oit_A 223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ 302 (434)
T ss_dssp CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence 66666655432 3799999999988886543 2 39999998642 112221 2222
Q ss_pred CEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 201 ~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
+-..+.+.++.+.+++++.....|.+....
T Consensus 303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 303 HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 323344447777777777656666666543
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.1e-16 Score=161.32 Aligned_cols=304 Identities=11% Similarity=0.051 Sum_probs=193.1
Q ss_pred EEECCCCeEEEEeccccccccc-----cccccccccccccCccceEEeeecccccccccCCcEEEEEEC-CC--eEEEEE
Q 008058 31 IWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG--DVLALA 102 (579)
Q Consensus 31 vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g--~i~iwd 102 (579)
.+|..+|.....+..+...... ..|+++ ++.|+.++. +| .|.+||
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~d 66 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLLD 66 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEEE
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEEe
Confidence 4577788887777765543332 344444 777888777 66 488999
Q ss_pred ccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE--EccCCCEEEEE---
Q 008058 103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA--- 177 (579)
Q Consensus 103 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~--~~p~g~~l~~~--- 177 (579)
+.+++.. .+..++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++..
T Consensus 67 ~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 145 (388)
T 3pe7_A 67 LNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR 145 (388)
T ss_dssp TTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc
Confidence 9998876 34455655555778999999999999999999999999987777766665554444 48999988742
Q ss_pred -------------------C--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecC-----CCeEEEEEcC
Q 008058 178 -------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRTD 230 (579)
Q Consensus 178 -------------------~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~-----d~~i~vwd~~ 230 (579)
. +.|++||+.+++.. .+..+...+..+.|+| +|+.++.++.. ...|.++|..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 1 57999999988654 4555677899999999 99988887632 2368888876
Q ss_pred CCccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEc-CC----eEEEEECCCceee--cccCCceEEeee--c
Q 008058 231 GVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEEL--RNTKATKILSSS--E 300 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~~~~--~ 300 (579)
.+... .+ ..+. ...+....|+ |||+.|+..+. ++ .|++||+.+++.. ............ .
T Consensus 225 ~~~~~---~l--~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 225 GTNMR---KV--KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp SCCCE---ES--CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred CCceE---Ee--eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 65422 11 1122 2344556677 99998866554 22 3999999988642 222221111111 1
Q ss_pred ccCcccccccchhhhhccccce--ecCCceEEEEEeCCCCCceeEEEecCCC-----------CcEEEeecCCcceeecc
Q 008058 301 DVNSKSQKSATAAIFAAKLQDI--VKPASVHTFVAYGLLLKPSFQKILVNSG-----------EDINLNCSQDGVLLPMS 367 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~~s 367 (579)
..++++++ .++....++. ....+..+.+..-.. .....+..|.. .+..++|||||+.|.++
T Consensus 295 ~~~spdg~----~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 295 SLMVGDGS----DAPVDVQDDSGYKIENDPFLYVFNMKN--GTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp SEEEEEEC----CC------------CCCCEEEEEETTT--TEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CeEccCCC----cceeEeeeccccccCCCCEEEEEeccC--CceEEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 13677777 4443322100 001122333333111 22345556665 57888999999988455
Q ss_pred ccceecccceee
Q 008058 368 QSLLKSKRGRYV 379 (579)
Q Consensus 368 ~s~d~~~~~w~~ 379 (579)
+..++...+|.+
T Consensus 369 s~~~g~~~l~~~ 380 (388)
T 3pe7_A 369 SDVHGKPALYLA 380 (388)
T ss_dssp ECTTSSCEEEEE
T ss_pred ecCCCceeEEEE
Confidence 556777777765
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.1e-16 Score=157.91 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=130.9
Q ss_pred CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCE--EEEEe-------------CCCcEEEEeCC-C
Q 008058 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~~-------------~dg~v~iwd~~-~ 148 (579)
+++|++++.+ .|.+|++. +++..........+.+.+++|+|+|++ +++++ .+|.+.+|++. +
T Consensus 51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~ 129 (365)
T 1jof_A 51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET 129 (365)
T ss_dssp SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence 7778888887 99999997 777643221101123556899999994 45553 68999999997 4
Q ss_pred CceeeEee----cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeee--EEee--cCCCCEEEEEEecCCCEEEE
Q 008058 149 GSLLGKFR----ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 149 ~~~~~~~~----~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~-~~~~~--~~~~--~h~~~v~~l~~~~~~~~l~s 216 (579)
++....+. .+...+.+++|+|||+++++++ +.|++||+. +++.. ..+. .|...+..++|+|+|+++++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence 66554443 2455789999999999888764 699999998 67643 3343 24567899999999999988
Q ss_pred EecCCCeEEEEEcCC--Ccccc-ceeEEeeecC----ce------eeEeEE-ecCCcccCCCcEEEEEEcC-C-----eE
Q 008058 217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP----AV------FMDCRC-IDNGGVDDAGLYVLAISET-G-----VC 276 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~----~~------~~~~~~-~~~~~~~~~~~~l~s~~~d-g-----~i 276 (579)
++..++.|.+|++.. ++... ...+..+... .. ....+. |+ |||++|++++.+ + .|
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence 775578999998763 33210 0011111111 10 345566 77 999998877653 2 89
Q ss_pred EEEECC
Q 008058 277 YIWYGQ 282 (579)
Q Consensus 277 ~iwd~~ 282 (579)
.+|+++
T Consensus 285 ~v~~~~ 290 (365)
T 1jof_A 285 AGFKLR 290 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999875
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=9.4e-17 Score=159.05 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=112.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCC-----
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST----- 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~----- 159 (579)
+.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|++++ ++..++.|++||+.+++.+..+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 678899999999999999999987766433323678999999998765 44578999999999998887776432
Q ss_pred -CCeeEEEEccCCCEEEEEC--------------CeEEEEECCCCe---eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 160 -~~v~~l~~~p~g~~l~~~~--------------g~i~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
..+.+++|+|+|+++++++ +.|.+||+.+++ .+..+. +...+.+++|+|+|+ +++++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--- 165 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--- 165 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---
Confidence 2378999999999998876 799999998843 344444 344688999999999 55543
Q ss_pred CeEEEEEcCCCcc
Q 008058 222 RYIALWRTDGVKK 234 (579)
Q Consensus 222 ~~i~vwd~~~~~~ 234 (579)
+.|.+||+.+++.
T Consensus 166 ~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 166 PDIYKMDVKTGKY 178 (349)
T ss_dssp SSEEEECTTTCCE
T ss_pred CcEEEEeCCCCce
Confidence 3399999988763
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2.6e-15 Score=144.45 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=164.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++|+|+++++...++.|.+||.. ++....+...... .++.. ....+++.+.+ +.+
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----------~~~~~-~p~~i~~~~~~--------g~l 91 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQLL-YPNRVAVVRNS--------GDI 91 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTCBS-SEEEEEEETTT--------TEE
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----------ccccc-CceEEEEEcCC--------CeE
Confidence 455999999988888889999999987 6666555321100 01111 12344442221 444
Q ss_pred EEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--cCCCCeeEE
Q 008058 89 LVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCM 165 (579)
Q Consensus 89 l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l 165 (579)
+++... ++.|.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|++||. .++.+..+. .+...+.++
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence 444433 78899999 5666665654445567999999999997777777899999995 566666664 334578999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccceeE
Q 008058 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCV 240 (579)
Q Consensus 166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~ 240 (579)
+++|+|+++++.. +.|++||. +++.+..+..+ ...+..++++|+|+.+++.. .++ .|.+|+... +.. ..
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g-~~~---~~ 243 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDG-QLI---SA 243 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTS-CEE---EE
T ss_pred EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCC-CEE---EE
Confidence 9999999877765 89999997 45566666543 36789999999998777765 565 999999643 221 11
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+...........++++ |+|+.+++ +.|++|++|+....
T Consensus 244 ~~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred EcccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence 2222222224456676 89986666 67999999987554
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=2.8e-16 Score=158.33 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=160.9
Q ss_pred EEEccCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 11 TSFSPALDYFAICSG-DAR--IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 11 ~~fs~dg~~las~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+|||||++|++++. +|. |.+||..+++.......+........|+++ +.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~ 93 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD 93 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence 489999999999987 664 888899988877655443333323344444 78
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE--EccCCCEEEEE----------------------eCCCcEEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE 143 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------~~dg~v~i 143 (579)
.|+.++.++.|++||+.+++..... ..+...+.... ++|+++.++.. ..+..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 8999999999999999998865433 34445454443 48999988743 23467999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC-C-------eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCC
Q 008058 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK 212 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~-g-------~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~ 212 (579)
||+.+++... +..+...+..++|+| ||+.|+.+. + .|+++|...++ ...+..+. ..+..+.|+|||+
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCC
Confidence 9999886544 444566789999999 999887654 1 68888876654 34444444 3578899999999
Q ss_pred EEEEEecCCC----eEEEEEcCCCccccceeEEeeecCcee---eEeEEecCCcccCCCcEEEEE---------EcCCeE
Q 008058 213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC 276 (579)
Q Consensus 213 ~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~---------~~dg~i 276 (579)
.|+..+..++ .|++||+.+++.. .+......... .....|+ |||+.|+.. ..+..|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence 8766553322 3999999988643 22222210000 1112355 899888764 446689
Q ss_pred EEEECCCcee
Q 008058 277 YIWYGQNIEE 286 (579)
Q Consensus 277 ~iwd~~~~~~ 286 (579)
++||+.+++.
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999988764
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=8.6e-17 Score=171.45 Aligned_cols=265 Identities=10% Similarity=-0.031 Sum_probs=174.1
Q ss_pred CccceEEeeecccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcE
Q 008058 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMV 141 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v 141 (579)
..+..+.+.+. ++.|++++. +|.+.||++.+++.. ++...+...+.++.|+|| +.+++++. +...
T Consensus 22 ~~~~~~~~~~D---------G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 22 VEKYSLQGVVD---------GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp SCEEEEEEEET---------TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred cchheeecCCC---------CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 34455555553 777888776 999999999777664 444444468999999999 77777765 4555
Q ss_pred EEEeCCC---CceeeEeecCCCCeeEEEEccCCCE--EEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058 142 CEIDPLT---GSLLGKFRASTKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 142 ~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~g~~--l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 215 (579)
++|.+.. +... .+... ..+...+|+|+|+. ++++. +.+.+||+.+++.......+ . .+++|+|||++++
T Consensus 91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la 165 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIA 165 (582)
T ss_dssp EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEE
T ss_pred EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEE
Confidence 5654432 3322 33322 24456788888864 44444 66779999988765544433 3 7899999999999
Q ss_pred EEecCC----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC--eEEEEECCCceeecc
Q 008058 216 SSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRN 289 (579)
Q Consensus 216 s~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 289 (579)
+++ .| +.|++||+.+++.. .+..+........|+ |||++|+++..+| .|++||+++++.. .
T Consensus 166 ~~~-~~~~~~~~i~~~d~~~g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 166 GLG-FFGGGRVSLFTSNLSSGGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEE-EEETTEEEEEEEETTTCCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred EEE-EcCCCCeEEEEEcCCCCCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 876 35 68999999887633 233444555778887 9999999888888 8999999988765 3
Q ss_pred cCCceEEeeeccc--------CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008058 290 TKATKILSSSEDV--------NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (579)
Q Consensus 290 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (579)
.......+.. .. ++++++ .+++++.++.++++. . |. .. ..+...+.+++|+ ||
T Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~spdg~----~~~~~~~~g~~~l~~-----~-g~----~~---~~~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 233 LELPSKDFSS-YRPTAITWLGYLPDGR----LAVVARREGRSAVFI-----D-GE----RV---EAPQGNHGRVVLW-RG 293 (582)
T ss_dssp CCCSCSHHHH-HCCSEEEEEEECTTSC----EEEEEEETTEEEEEE-----T-TE----EE---CCCSSEEEEEEEE-TT
T ss_pred ccCCCcChhh-hhhccccceeEcCCCc----EEEEEEcCCcEEEEE-----E-CC----ee---ccCCCceEEEEec-CC
Confidence 2222111111 12 567764 677777776544432 1 21 11 1334568899999 99
Q ss_pred ceeeccccceec---ccceee
Q 008058 362 VLLPMSQSLLKS---KRGRYV 379 (579)
Q Consensus 362 ~~l~~s~s~d~~---~~~w~~ 379 (579)
+++ ++++.+.+ +++|+.
T Consensus 294 ~~l-~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 294 KLV-TSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEE-EEEEETTEEEEEEEETT
T ss_pred EEE-EEEcCCCCCCeEEEEcC
Confidence 998 77665533 455544
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=6.6e-17 Score=176.90 Aligned_cols=275 Identities=13% Similarity=0.059 Sum_probs=176.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCC---CEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~ 153 (579)
+. ++..+.++.|++||+.+++....+ .+|.. .+.+++|+|||++|++++. ++.|++||+.+++.+.
T Consensus 27 g~-~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 27 QE-YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp SE-EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred Ce-EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 53 555567999999999999876443 33432 4899999999999998876 7899999999887631
Q ss_pred EeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCE-----------------EEEEEecCCCEE
Q 008058 154 KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV-----------------RFMTFSDNGKYV 214 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~l 214 (579)
... ....+.+++|+|||+.|+.+. +.|++||+.+++..... .++...| .++.|+|||++|
T Consensus 105 ~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l 183 (719)
T 1z68_A 105 GNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL 183 (719)
T ss_dssp SSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred cee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence 111 124688999999999999888 99999999888764322 2333322 489999999999
Q ss_pred EEEecCCC---------------------------------eEEEEEcCCCccccceeE---EeeecCceeeEeEEecCC
Q 008058 215 LSSAVGER---------------------------------YIALWRTDGVKKQSASCV---LAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 215 ~s~s~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 258 (579)
++++.+++ .|++||+.+++......+ ..+..+...+..+.|+
T Consensus 184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-- 261 (719)
T 1z68_A 184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-- 261 (719)
T ss_dssp EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES--
T ss_pred EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe--
Confidence 98874221 788999987653100000 0122355566777887
Q ss_pred cccCCCcEEEEEEcC----CeEEEEE----CCCceeecccC----CceEEee----ecccCcccccccchhhhh--cccc
Q 008058 259 GVDDAGLYVLAISET----GVCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKSQKSATAAIFA--AKLQ 320 (579)
Q Consensus 259 ~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~i~~--~~~~ 320 (579)
||++++++.... ..|.+|| ..+++...... .....+. ....|+++++ .++. +..+
T Consensus 262 ---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~ 334 (719)
T 1z68_A 262 ---TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI----SYYKIFSDKD 334 (719)
T ss_dssp ---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS----CEEEEEECTT
T ss_pred ---CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC----eEEEEEEccC
Confidence 998877775433 2488899 87776554331 1111111 0123567766 3333 2233
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc----eecccceeee
Q 008058 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ 380 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~----d~~~~~w~~~ 380 (579)
+ ..++++..-.. .....+..+...+..+.++ ||..+.++++. ++..++|.+.
T Consensus 335 g-----~~~l~~~~~~~--~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 335 G-----YKHIHYIKDTV--ENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp S-----CEEEEEESSCS--TTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred C-----ceEEEEEECCC--CceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 3 22333332111 1134555566667888888 88877455554 4778889874
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2e-16 Score=159.64 Aligned_cols=232 Identities=9% Similarity=0.003 Sum_probs=153.3
Q ss_pred EEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 11 TSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 11 ~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
++|||||++|+.+... ..|.+||..+++....... .... .....|.+. ++
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-~~~~-----------------~~~~~~spd---------g~ 93 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-KGDN-----------------TFGGFISTD---------ER 93 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-SCBC-----------------TTTCEECTT---------SS
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC-CCCc-----------------cccceECCC---------CC
Confidence 4899999998887643 4688889988876443221 1111 111334332 78
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEE-------------------EEEccCCCEEEEE-----eCCCcEEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GADGMVCE 143 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----~~dg~v~i 143 (579)
.|+.++.++.|++||+.+++..... ..+...... +.|+|+++.++.+ ..+..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 8999999999999999988765333 223332222 3567777766544 35678999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC--------CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCC
Q 008058 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGK 212 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~ 212 (579)
||+.+++..... .+...+..+.|+| +|+.++..+ ..|++||+.+++. ..+..+ ...+..+.|+|+|+
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSS
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCC
Confidence 999888765544 4566889999999 788666543 2688999876543 333333 23578899999999
Q ss_pred EEEEEecCC----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEE----------------
Q 008058 213 YVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS---------------- 271 (579)
Q Consensus 213 ~l~s~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~---------------- 271 (579)
+|+.++..+ +.|++||+.+++.. .+.. .+. .. ..|+ | +|+++++++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~--~~~--~~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENE---EVMV--MPP--CS-HLMS-----NFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEE---EEEE--CCS--EE-EEEE-----CSSSSEEEEEECCC----------CCC
T ss_pred EEEEEecCCCCccceEEEEECCCCCeE---Eeee--CCC--CC-CCcc-----CCCCceEEEecCCcceeeccccccccC
Confidence 887775322 44999999877533 2221 122 12 5566 7 999888765
Q ss_pred cCCeEEEEECCCce
Q 008058 272 ETGVCYIWYGQNIE 285 (579)
Q Consensus 272 ~dg~i~iwd~~~~~ 285 (579)
.++.|++||+.+++
T Consensus 318 ~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 318 NDPFLYVLNTKAKS 331 (396)
T ss_dssp CCCEEEEEETTTTB
T ss_pred CCCcEEEEecccCc
Confidence 24689999987664
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=3.4e-15 Score=146.84 Aligned_cols=240 Identities=8% Similarity=0.074 Sum_probs=167.4
Q ss_pred CcccceEEEEccCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEecccccccccccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRL 59 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (579)
+.+ ..++++|+|+++++...+ ++|.+||..+++....+...
T Consensus 24 ~~v--~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 88 (329)
T 3fvz_A 24 GQV--SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN------------- 88 (329)
T ss_dssp SCE--EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------------
T ss_pred CCc--eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------------
Confidence 456 455999999999888777 47999999889887655311
Q ss_pred ccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEec--------CCCCCCEEEEEEcc-CC
Q 008058 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-HG 129 (579)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~--------~~h~~~V~~l~~~~-~~ 129 (579)
+.. ....+++.+. +.++++.+.++.|++||..... .+..+- .++.....+++|+| +|
T Consensus 89 ---~~~-~p~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 89 ---LFY-LPHGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp ---TCS-SEEEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred ---ccC-CceEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 000 1123333321 6777777778999999986552 333332 24455789999999 78
Q ss_pred CEEEEEe-CCCcEEEEeCCCCceeeEeecCC----------CCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEe
Q 008058 130 SCIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 130 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~ 195 (579)
..+++.+ .++.|++|| .+++.+..+.... ..+..++++|+ |.++++.. +.|++||..+++.+..+
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 7777775 689999999 5787777764322 24899999998 66666655 79999999989888887
Q ss_pred e--cCCCCEEEEEEecCCCEEEEEe------cCCCeEEEEEcCCCccccceeEEee---ecCceeeEeEEecCCcccCCC
Q 008058 196 S--GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 196 ~--~h~~~v~~l~~~~~~~~l~s~s------~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 264 (579)
. .+...+..++|+| +..+.+.+ ..+..|++|+..+++.. ..+ .........++++ |+|
T Consensus 235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~~p~~ia~~-----~dG 303 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----DVFKPVRKHFDMPHDIVAS-----EDG 303 (329)
T ss_dssp CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----EEECCSSSCCSSEEEEEEC-----TTS
T ss_pred eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----EEEcCCCCccCCeeEEEEC-----CCC
Confidence 4 4567788999999 43333222 13458999999887643 222 1223335567777 899
Q ss_pred cEEEEEEcCCeEEEEECCC
Q 008058 265 LYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 265 ~~l~s~~~dg~i~iwd~~~ 283 (579)
..+++...+++|++|++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEESSSCCEEEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCc
Confidence 8888888899999998753
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=5.6e-15 Score=160.02 Aligned_cols=249 Identities=9% Similarity=0.025 Sum_probs=159.4
Q ss_pred CcccceEEEEccCCCEEEEE--eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeee-ccccc
Q 008058 4 SNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKK 80 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~ 80 (579)
..| ..++|++++-++++. +.+++..||....+.....+..+...+.... | ........|.. ++
T Consensus 24 ~~~--~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--------~-~~~~~~~~~~~SPD--- 89 (662)
T 3azo_A 24 GRP--ACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRV--------F-EYSGFPWAGVPRPA--- 89 (662)
T ss_dssp SCC--EEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCG--------G-GTCCCCEEEECCSS---
T ss_pred Ccc--ceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccc--------c-ccCCccceeeeecC---
Confidence 445 344899887677776 5588899998654444455554432221100 0 00111234441 22
Q ss_pred ccccCCcE-EEEEEC-CCeEEEEEcc--C-CeEEEEecCC----CCCCEEEEEEccCCCEEEEEeCC----------CcE
Q 008058 81 KRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GMV 141 (579)
Q Consensus 81 ~~~~~~~~-l~~~~~-~g~i~iwd~~--~-~~~~~~~~~~----h~~~V~~l~~~~~~~~l~s~~~d----------g~v 141 (579)
++. |+.++. +..|.+|++. . ++. ..+... |...+.+++|+|||+.|++++.+ ..|
T Consensus 90 -----g~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 90 -----GGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp -----SSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred -----CCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 555 555443 4567777766 3 443 233221 56788999999999999998877 589
Q ss_pred EEEeCCC------CceeeEee-cCCCCeeEEEEccCCCEEEEEC--C--------eEEEEECC-CC---eeeEEeecCCC
Q 008058 142 CEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA--G--------QLKTFNCS-DH---KKMQKFSGHPG 200 (579)
Q Consensus 142 ~iwd~~~------~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~--g--------~i~vwd~~-~~---~~~~~~~~h~~ 200 (579)
++||+.+ ++. ..+. .+...+..++|+|||++|+.++ + .|++||+. ++ +......+|..
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 9999987 544 4444 5556788899999999998765 2 79999999 56 44444455678
Q ss_pred CEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecCcee--------eEeEEecCCcccCCCcEEEEE
Q 008058 201 AVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 201 ~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~ 270 (579)
.+..+.|+|||++++++. .++ .|.+||+.+++.. ....++... ...+.|+ |++++++++
T Consensus 243 ~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~~ 311 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT-----QLCRREEEFAGPLWTPGMRWFAPL-----ANGLIAVVH 311 (662)
T ss_dssp CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE-----ESSCCSSBSSCCCCSTTCCSEEEC-----TTSCEEEEE
T ss_pred eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee-----ecccccccccCccccccCceEeEe-----CCCEEEEEE
Confidence 899999999999665554 677 5666666555422 111122111 2345565 789999999
Q ss_pred EcCCeEEEE--ECCCce
Q 008058 271 SETGVCYIW--YGQNIE 285 (579)
Q Consensus 271 ~~dg~i~iw--d~~~~~ 285 (579)
+. |.+++| |..+++
T Consensus 312 ~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 312 GK-GAAVLGILDPESGE 327 (662)
T ss_dssp BS-SSCEEEEEETTTTE
T ss_pred Ec-CccEEEEEECCCCc
Confidence 98 999999 555554
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=1.5e-14 Score=144.03 Aligned_cols=291 Identities=10% Similarity=0.033 Sum_probs=185.8
Q ss_pred cCCCEEEEEe------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 15 ~dg~~las~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+++++++... .|+.|.+||..+++.+..+.....+ .+.|+++ +++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~ 63 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK 63 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence 3677666654 3789999999999988777644332 4444444 777
Q ss_pred EEEEEC----------CCeEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCce
Q 008058 89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (579)
Q Consensus 89 l~~~~~----------~g~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~ 151 (579)
++++.. ++.|.+||+.+++.+.++... +......++|+|||++|+++.. +++|.+||+.+++.
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 888763 567999999998887665321 2345678999999999998874 68999999999988
Q ss_pred eeE-eecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCC-CeeeEE------eecCCCCEEEEEEecCCCEEEEEecC
Q 008058 152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 ~~~-~~~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~-~~~~~~------~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
+.. +... ....+.+.|++ ..+++.+ |.+.+|+... ++.... +..+..++ .+.++|++..++..+ .
T Consensus 144 ~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~ 219 (361)
T 2oiz_A 144 VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y 219 (361)
T ss_dssp EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence 877 5532 22335677776 3444433 8888888865 544422 22222332 344578887777776 6
Q ss_pred CCeEEEEEcCCCccccceeEEeeec-------Cc---eeeEeEEecCCcccCCCcEEEEEEc-----------CCeEEEE
Q 008058 221 ERYIALWRTDGVKKQSASCVLAMEH-------PA---VFMDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIW 279 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~s~~~-----------dg~i~iw 279 (579)
++.+.++|+...... ....... .. .....+.++ |++.+++++.. ++.|.+|
T Consensus 220 ~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 220 YGNVYSADFSGDEVK---VDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp TSEEEEEECSSSSCE---EEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CCeEEEEEecCCCce---ecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 899999999765422 1111100 00 001124565 88888877654 3489999
Q ss_pred ECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCC--ceeEEEecCCCCcEEEee
Q 008058 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNC 357 (579)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~~~~ 357 (579)
|..+++.+....... .....++++++ .+++++. +.+..+| .... ....++..+...-..+++
T Consensus 292 D~~t~~~v~~i~~~~---p~~ia~spdg~----~l~v~n~-~~v~v~D--------~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD---ALSMTIDQQRN----LMLTLDG-GNVNVYD--------ISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp ETTTTEEEEEEECTT---CCEEEEETTTT----EEEEECS-SCEEEEE--------CSSSSCEEEEEETTSCSSEEEEEE
T ss_pred ECCCCcEEEEEecCC---eeEEEECCCCC----EEEEeCC-CeEEEEE--------CCCCcceeeEEeccCCCCcEEEEe
Confidence 999999887655443 11122577777 6666654 4333322 2223 444454455556788999
Q ss_pred cCCcc
Q 008058 358 SQDGV 362 (579)
Q Consensus 358 s~dg~ 362 (579)
+|||.
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=1.8e-13 Score=143.31 Aligned_cols=233 Identities=9% Similarity=-0.005 Sum_probs=165.4
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
.+|.+.++++...+++|.++|..+++.+..+..... +..+.|+++ +++++++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~-p~~v~~SpD---------------------------Gr~lyv~ 214 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSAS---------------------------GRYLFVI 214 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSC-EEEEEECTT---------------------------SCEEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC-ccceEECCC---------------------------CCEEEEE
Confidence 344455666777799999999999999888763322 223344444 8889999
Q ss_pred ECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEc----cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------
Q 008058 93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------- 158 (579)
Q Consensus 93 ~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------- 158 (579)
+.++.|.+||+. +++.+.++..+ .....++|+ |||+++++++ .+++|.++|..+.+.+.++...
T Consensus 215 ~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred cCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence 999999999996 77777776543 357899999 6999987766 5689999999999988876532
Q ss_pred ----CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 159 ----~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
...+..+..++++..++... |.|.++|....+.+ ..+ ........+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 12678899999877666553 89999999875432 233 234557789999999999888767899999999
Q ss_pred CCCccccceeE-EeeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCC
Q 008058 230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQN 283 (579)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~ 283 (579)
.+++......+ ....|+..... ++. |++..+.+.+ .++.|.++|..+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence 98864421111 11123322222 244 7755555443 368999999887
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=3.5e-14 Score=139.75 Aligned_cols=246 Identities=11% Similarity=0.099 Sum_probs=165.0
Q ss_pred CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 1 ~~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
|.+..|..+ +|+|++..++..+.++.++.| .+.....+..+... ..++.|.+.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~---- 55 (333)
T 2dg1_A 3 MSQQDLPTL--FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQ------------------LEGLNFDRQ---- 55 (333)
T ss_dssp ---CCCCBC--CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCC------------------EEEEEECTT----
T ss_pred cccccccee--eecCCccceeEEeecccCccc---ccceeEEEeccCcc------------------ccCcEECCC----
Confidence 455677555 999999888887888999999 34444444322221 234555432
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEee
Q 008058 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~ 156 (579)
+.+++++..++.|.+||..+++..... ..+...+.+++++|+|+++++...+ +.|.+||..++.....+.
T Consensus 56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 666677788899999999988765333 2456789999999999887777666 689999988776543332
Q ss_pred --cCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 157 --~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
.+...+.+++++|+|+++++.. +.|+.||..+++.. .+..+...+..++|+|++++++.+...++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 2345789999999999888765 35666666554433 333334567899999999877666546789999
Q ss_pred EEcCC-Cccccc---eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 227 WRTDG-VKKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 227 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
|++.. +..... ........ ......++++ ++|+..++...++.|.+||.+ ++.+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~~-g~~~ 266 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID-----SDDNLYVAMYGQGRVLVFNKR-GYPI 266 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB-----TTCCEEEEEETTTEEEEECTT-SCEE
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEECCC-CCEE
Confidence 99964 221100 00111111 1345567776 889888877788999999984 4443
No 173
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=9.7e-14 Score=132.29 Aligned_cols=230 Identities=10% Similarity=0.070 Sum_probs=165.5
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
..+++|++++.|+.|.+||.++|+.+..+..+. .......+.++ +++++ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---------------------------G~ilv--s 53 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---------------------------GEILF--S 53 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---------------------------SCEEE--E
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---------------------------CCEEE--e
Confidence 346789999999999999999999999887543 12222222222 66666 5
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCC------CCeeEEE
Q 008058 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAST------KGISCMA 166 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~ 166 (579)
.++.|..||. +++.++++..++...+.++.+.|+|+.+++.+. ++.|..+|. +|+.+..+.... .....++
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 6788999999 899988886544457899999999999999887 888888885 788877765321 2455678
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+.++|+++++.. +.|..||.+ |+.+.++..+ ..+.++.+.++|+.+++++ .++.|..+|..+++.. ....
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~-----w~~~ 203 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV-----RRVN 203 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE-----EEEE
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE-----EEec
Confidence 899999999887 899999988 9999888765 3456678889999888776 5778999999987743 3332
Q ss_pred cC------ceeeEeEEecCCcccCCCcEEEEEEcC--------CeEEEEEC-CCceeec
Q 008058 245 HP------AVFMDCRCIDNGGVDDAGLYVLAISET--------GVCYIWYG-QNIEELR 288 (579)
Q Consensus 245 ~~------~~~~~~~~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~-~~~~~~~ 288 (579)
.. -......... ++|..+++.... +..+++++ .+++.+.
T Consensus 204 ~~~~~~~~l~~~~~~~~~-----~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W 257 (276)
T 3no2_A 204 ANDIEGVQLFFVAQLFPL-----QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW 257 (276)
T ss_dssp GGGSBSCCCSEEEEEEEC-----TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred CCCCCCccccccccceEc-----CCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence 21 1223444454 788888776421 23356655 3555443
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=9.6e-15 Score=160.00 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=135.4
Q ss_pred EEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058 11 TSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 11 ~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+|||||++|++++.+ +.+.+||+.+++... +..+...+....|+|+
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPd----------------------- 122 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPV----------------------- 122 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSS-----------------------
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCC-----------------------
Confidence 4889999999998876 566799999987643 4433333333344443
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----------------EEEEEccCCCEEEEEeCCC-----
Q 008058 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGADG----- 139 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~~~l~s~~~dg----- 139 (579)
++.|+.+ .++.|++|+..+++.......++...+ .++.|+|||+.|+.++.|.
T Consensus 123 ----G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 123 ----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp ----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred ----CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 6777777 568999999998886543334444333 3489999999998875332
Q ss_pred -------------------------------cEEEEeCCC---Cc--eeeEee------cCCCCeeEEEEccCCCEEEEE
Q 008058 140 -------------------------------MVCEIDPLT---GS--LLGKFR------ASTKGISCMAVSSDGKMLATA 177 (579)
Q Consensus 140 -------------------------------~v~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~p~g~~l~~~ 177 (579)
+|++||+.+ ++ ....+. ++...+..++|+|||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 488899988 73 222333 266689999999999977655
Q ss_pred C------CeEEEEECCCCe----e--eEEe--ecCCCCEE-----EEEEecCCCEEE-EEecCCC--eEEEEEcCCCc
Q 008058 178 A------GQLKTFNCSDHK----K--MQKF--SGHPGAVR-----FMTFSDNGKYVL-SSAVGER--YIALWRTDGVK 233 (579)
Q Consensus 178 ~------g~i~vwd~~~~~----~--~~~~--~~h~~~v~-----~l~~~~~~~~l~-s~s~~d~--~i~vwd~~~~~ 233 (579)
. ..|++||+.+++ + +..+ .+|...|. .+.|+|||+.++ ..+..+| .|++||+.+++
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 3 379999999886 2 2222 45665554 789999999877 6654444 68888887765
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=1.9e-13 Score=136.04 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=161.9
Q ss_pred EEEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEecccc------ccccccccccccccccccCccceEEe
Q 008058 10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 10 ~~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
.++|||||+++++++ .+++|.+||..+++.+.++.... .....+.++++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd--------------- 118 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD--------------- 118 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence 459999999999886 26789999999999888776321 12223333333
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCC-
Q 008058 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT- 148 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~- 148 (579)
+++++++.. ++.|.+||+.+++.+.. +.. .....+.+.|++ ..+++.+.||.+..|++..
T Consensus 119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 778888774 57899999999998876 532 233446678876 5688888999999999865
Q ss_pred Cceee------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeec------CC----CCEEEEEEe
Q 008058 149 GSLLG------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG------HP----GAVRFMTFS 208 (579)
Q Consensus 149 ~~~~~------~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~------h~----~~v~~l~~~ 208 (579)
++... .+.....+ ..+.++|++..++..+ +.++++|+..... +..+.- +. .....++|+
T Consensus 184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 55442 22222222 2334467776666555 8999999875432 222211 00 111237899
Q ss_pred cCCCEEEEEec----------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 209 ~~~~~l~s~s~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
|+++.++++.. .++.|.+||+.+.+.. ..+..+. ...+.|+ |+|++|++++. +.|.+
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence 99888877642 1348999999988643 3444444 5667777 99999999887 99999
Q ss_pred EECCCc--eeeccc
Q 008058 279 WYGQNI--EELRNT 290 (579)
Q Consensus 279 wd~~~~--~~~~~~ 290 (579)
||..++ +.+..+
T Consensus 330 ~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQPEPKLLRTI 343 (361)
T ss_dssp EECSSSSCEEEEEE
T ss_pred EECCCCcceeeEEe
Confidence 999999 877664
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=3e-13 Score=147.45 Aligned_cols=237 Identities=12% Similarity=0.073 Sum_probs=160.3
Q ss_pred eEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
-.++|||||++||.++.++ +|++||+.+|+........ .....+.|.+.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------------------~~~~~~~wspD------- 181 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------------------VKFSCMAWTHD------- 181 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------------------ECSCCEEECTT-------
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------------------cccceEEEEeC-------
Confidence 3559999999999876543 8999999999876532110 01234566553
Q ss_pred cCCcEEEEEECCCe----------------EEEEEccCCeEE--EEe-cCCCCCCEEEEEEccCCCEEEEEeC-----CC
Q 008058 84 LGSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DG 139 (579)
Q Consensus 84 ~~~~~l~~~~~~g~----------------i~iwd~~~~~~~--~~~-~~~h~~~V~~l~~~~~~~~l~s~~~-----dg 139 (579)
++.|+.++.++. |++|++.+++.. ..+ ...|...+.++.|+|||++|+.++. +.
T Consensus 182 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 --GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp --SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred --CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 677888877655 999999887621 111 1235566889999999999887764 56
Q ss_pred cEEEEeCCC------Cc-eeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe--eeEEeecCCC--CE
Q 008058 140 MVCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AV 202 (579)
Q Consensus 140 ~v~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~--~~~~~~~h~~--~v 202 (579)
.|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+ +.|.+||+.++. ....+..|.. .+
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 899999976 43 45566666665554 5888988777654 379999998764 2345555544 67
Q ss_pred EEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE----cCCeE
Q 008058 203 RFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS----ETGVC 276 (579)
Q Consensus 203 ~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~i 276 (579)
..+.|++++..+++.. .|+. |.+|++.+++.. ..+..+...+..+.++ |++..++... ..+++
T Consensus 339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp EEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEE
T ss_pred EEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEE
Confidence 8899987776666665 5774 566676555422 2333334445556666 7887665442 25799
Q ss_pred EEEECCCce
Q 008058 277 YIWYGQNIE 285 (579)
Q Consensus 277 ~iwd~~~~~ 285 (579)
+.||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998876
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=1e-13 Score=136.26 Aligned_cols=222 Identities=11% Similarity=0.036 Sum_probs=152.8
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEee---------cCCCCeeEE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM 165 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~l 165 (579)
+.|.+||..+++.......++.....+++++|+|+.+++...++.|++||..... .+..+. .+...+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 4799999999998766655566789999999999988888889999999975432 455552 333468999
Q ss_pred EEcc-CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 166 ~~~p-~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h----------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
+++| +|.++++.+ +.|++|| .+++.+..+... -.....++++|++..++++...++.|++|+..+
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 9999 888888873 7999999 567777776422 234889999999444444445789999999986
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-------EcCCeEEEEECCCceeecccCCceEEeeecccCc
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-------SETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (579)
++.. ..+...........+.++ | +..+++. ..++.|++|+..+++.+....+
T Consensus 228 G~~~---~~~~~~~~~~~~~~~~~~-----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------ 286 (329)
T 3fvz_A 228 KEFV---REIKHASFGRNVFAISYI-----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------ 286 (329)
T ss_dssp CCEE---EEECCTTTTTCEEEEEEE-----T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------
T ss_pred CcEE---EEEeccccCCCcceeeec-----C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------
Confidence 6533 112112222333455565 6 3333332 2344788888776654432210
Q ss_pred ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..++......++++|||.++ ++.+.++.|++|++.
T Consensus 287 ----------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 287 ----------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT 321 (329)
T ss_dssp ----------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred ----------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence 01233457889999999777 888889999999874
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=2.3e-13 Score=129.47 Aligned_cols=238 Identities=8% Similarity=-0.049 Sum_probs=156.0
Q ss_pred eEEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
..++++|+|++++ +.+.++.|.+||..++.......... .....+++.+. +.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------~~p~~i~~~~~---------g~ 79 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------------------YQPQGLAVDGA---------GT 79 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------------------CSCCCEEECTT---------CC
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------------------CCcceeEECCC---------CC
Confidence 3569999999776 44678899999976554321111000 11223444331 45
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
++++..++.|.+||...+... .+.......+.+++++|+|+.+++...++.|.+||..+.............+.++++
T Consensus 80 -l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 80 -VYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp -EEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred -EEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 455555889999998776543 232233367899999999987777777889999986555433222223346789999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
+|+|+++++.. +.|.+||............+...+.+++++++|..+++.. .++.|.+|+....... .....
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~-----~~~~~ 231 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST-----VLPFT 231 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE-----ECCCC
T ss_pred eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce-----eeccC
Confidence 99999777765 7999999887654433333446788999999997666554 6889999998765322 11111
Q ss_pred CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
.......++++ ++|+.+++...+++|++|+....+.
T Consensus 232 ~~~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 GLNTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCSCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence 22334566776 8899888888899999999876554
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=4.6e-13 Score=129.41 Aligned_cols=231 Identities=12% Similarity=0.088 Sum_probs=153.1
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+|+ +++++..++.|..||..++ ...+..+...+. ++++.+. +.+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------~l~~~~d---------g~l 82 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQN------------------GHCLNKQ---------GHL 82 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEE------------------EEEECTT---------CCE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcc------------------eeeECCC---------CcE
Confidence 459999998 6777778899999999877 444543332222 3333331 666
Q ss_pred EEEEECCCeEEEEEccCCeEEEEec--C-CCCCCEEEEEEccCCCEEEEEe-----------------CCCcEEEEeCCC
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLS--D-CHPGGVSAISFATHGSCIYSAG-----------------ADGMVCEIDPLT 148 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~--~-~h~~~V~~l~~~~~~~~l~s~~-----------------~dg~v~iwd~~~ 148 (579)
+++...++.|.+||..+++...... . .....+.+++++|+|+++++.+ ..+.|..+|..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 5555556889999998887643221 1 1123567899999999877732 13467777755
Q ss_pred CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~-~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~ 222 (579)
++ +..+..+......++|+|+|+.+++.. +.|++|++. +++. ...+..+...+.+++++++|+.+++. ++
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 44 344455566789999999999986655 799999997 4544 33343355667789999999866554 67
Q ss_pred eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
.|.+|+.. ++. ...+..+.. ...+.|. .|+++.|++++.+ .+.-++.++.+.
T Consensus 238 ~v~~~~~~-g~~-----~~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLTPD-GDE-----LGRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECTT-SCE-----EEEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred eEEEECCC-CCE-----EEEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence 89999986 332 223333333 5556663 1788989888875 455566655543
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=9.6e-14 Score=139.93 Aligned_cols=249 Identities=10% Similarity=0.053 Sum_probs=151.1
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccc---ccccccccccccccCccceEEeeecccccccccCCc
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTET---TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+.|||||++|++++.++.|++||+.+++....+..+..... .+.|... ............|.+. +.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~~spd---------g~ 154 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVGIEILKRDWQPL---------TS 154 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCC---------CS
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--CccccccccccccCCC---------Cc
Confidence 48999999999999999999999998876655443322100 0111100 0000000000111111 33
Q ss_pred EEEEE-----ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceeeEe
Q 008058 88 LLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 88 ~l~~~-----~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~~~~~~~~ 155 (579)
.++.+ ..+..|.+||+.+++..... .+...+..+.|+| +++.|+.++.+ ..|.+||+..++.....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 33332 34567999999988765333 4667899999999 78877766543 46889998765433322
Q ss_pred ecC-CCCeeEEEEccCCCEEEEEC-----Ce--EEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEec-------
Q 008058 156 RAS-TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV------- 219 (579)
Q Consensus 156 ~~~-~~~v~~l~~~p~g~~l~~~~-----g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~------- 219 (579)
... ...+..++|+|+|+.|+.++ .. |++||+.+++...... ... .. +.|+| +|+++++++.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeec
Confidence 211 22578899999999877664 24 9999998886543222 222 33 89999 9998877541
Q ss_pred --------CCCeEEEEEcCCCccccceeEEeeecCce----------eeEeEEecCCcccCCCcEEEEEEc-CCeEEEE-
Q 008058 220 --------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW- 279 (579)
Q Consensus 220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iw- 279 (579)
.+..|++||+.+++.. .+. .+... ......|+ |+|++|+.++. ++...+|
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~---~l~--~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQ---KLC--KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCC---EEE--ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTTSSCEEEE
T ss_pred cccccccCCCCcEEEEecccCceE---Ecc--CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCCCCceEEE
Confidence 2478999999877633 111 12211 12334566 99998888765 5554454
Q ss_pred -ECCCce
Q 008058 280 -YGQNIE 285 (579)
Q Consensus 280 -d~~~~~ 285 (579)
++.+++
T Consensus 380 ~~~~~~~ 386 (396)
T 3c5m_A 380 ADVPESY 386 (396)
T ss_dssp EECCTTC
T ss_pred EEEcccc
Confidence 554443
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=1.1e-12 Score=129.85 Aligned_cols=213 Identities=10% Similarity=0.081 Sum_probs=138.2
Q ss_pred EEccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 12 ~fs~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++ ||++++... .++.|.+||+.+++... + ..+. ...|.|.
T Consensus 21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~------------------~~~~SpD------ 69 (347)
T 2gop_A 21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENAT------------------MPRISPD------ 69 (347)
T ss_dssp EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCE------------------EEEECTT------
T ss_pred eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCC------------------CeEECCC------
Confidence 56 899888753 25679999998876533 2 1222 3344332
Q ss_pred ccCCcEEEEEECC---C--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-------------------
Q 008058 83 KLGSSLLVLGTGG---G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------- 138 (579)
Q Consensus 83 ~~~~~~l~~~~~~---g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------------------- 138 (579)
+..|+.++.+ + .|.+|++.+++..... . +.. +.++.|+|||+.|+.++.+
T Consensus 70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred ---CCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 6667776653 3 3888899888765333 2 223 9999999999998887642
Q ss_pred --------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C--------eEEEEECCCCeeeEEeecCCCC
Q 008058 139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA 201 (579)
Q Consensus 139 --------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g--------~i~vwd~~~~~~~~~~~~h~~~ 201 (579)
..|++||+.+++.+..+.. . .+..++|+||| +++++. . ...+|.+.+++. ..+..+ ..
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~ 218 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS 218 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence 5799999988877455554 3 78899999999 777763 1 234444335543 444444 55
Q ss_pred EEEEEEecCCCEEEEEecCC-------CeEEEEEcCCCccccceeEEeeecCceeeEe-EEecCCcccCCCcEEEEEEcC
Q 008058 202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 202 v~~l~~~~~~~~l~s~s~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d 273 (579)
+..+ +|+|++++.++..+ ..|.+|| +++.. .....+...+.. ..|+ ++ .+++++.+
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-----~l~~~~~~~~~~~~~~s------dg-~~~~~~~~ 282 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-----GILDEVDRGVGQAKIKD------GK-VYFTLFEE 282 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-----ESSTTCCSEEEEEEEET------TE-EEEEEEET
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-----eccccCCcccCCccEEc------Cc-EEEEEecC
Confidence 5554 99999888876322 3677777 33311 112232333443 5563 56 88888999
Q ss_pred CeEEEEECCC
Q 008058 274 GVCYIWYGQN 283 (579)
Q Consensus 274 g~i~iwd~~~ 283 (579)
|.+++| +.+
T Consensus 283 ~~~~l~-~~~ 291 (347)
T 2gop_A 283 GSVNLY-IWD 291 (347)
T ss_dssp TEEEEE-EES
T ss_pred CcEEEE-EcC
Confidence 999999 763
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=1.5e-12 Score=125.10 Aligned_cols=181 Identities=13% Similarity=0.205 Sum_probs=130.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEec-----CCCCCCEEEEEE-ccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec-
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-----DCHPGGVSAISF-ATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA- 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-----~~h~~~V~~l~~-~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~- 157 (579)
+.++++...++.|.+||.. ++.+..+. .+|...+.++++ .++++.+++... ++.|++|| .+++.+..+..
T Consensus 41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~ 118 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT 118 (286)
T ss_dssp CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT
T ss_pred CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc
Confidence 6666777788999999987 55544442 134567899999 467765555533 88999999 67777776643
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
+...+.+++++|+|+++++.. +.|++||. .++.+..+. ++...+..++++|+|+.+++.. .++.|++|+.....
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAHCVKVFNYEGQY 196 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGTEEEEEETTCCE
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CCCEEEEEcCCCCE
Confidence 335789999999999888765 79999996 455666664 4556789999999998666654 68999999975432
Q ss_pred cccceeEEeeecC--ceeeEeEEecCCcccCCCcEEEEEEcCC-eEEEEEC
Q 008058 234 KQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG 281 (579)
Q Consensus 234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~ 281 (579)
+..+... ......++++ ++|+++++...++ .|.+||.
T Consensus 197 ------~~~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 197 ------LRQIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ------EEEESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECT
T ss_pred ------EEEEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECC
Confidence 1223222 2345567776 8998888887776 9999984
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=3.4e-12 Score=125.43 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=147.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|+|+|++++++..++.|.+||..+++.......+.. ...+++|.+. +.++
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~~~~i~~~~d---------g~l~ 101 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA------------------NPAAIKIHKD---------GRLF 101 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS------------------SEEEEEECTT---------SCEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCC------------------CcceEEECCC---------CcEE
Confidence 458999999888888899999999988876543322221 2334444432 5555
Q ss_pred EEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecC
Q 008058 90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 90 ~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~ 158 (579)
++...+ +.|.+||..++.....+. ..+...+.+++++|+|+.+++... .+.|..||..+++... +...
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 555555 589999998877542222 234567999999999987776653 3567777766554433 3223
Q ss_pred CCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE--------eecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~~~~--------~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v 226 (579)
...+..++|+|+|+.++.+. +.|++||..+ +..+.. +.++ ..+..++++++|+.+++.. .++.|.+
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~ 258 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV 258 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence 34678999999998665543 7999999964 332221 1222 4678899999998777665 5789999
Q ss_pred EEcCCCccccceeEEeeecCce------eeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 227 WRTDGVKKQSASCVLAMEHPAV------FMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
||.. ++.. ..+..+.. ....++|+ |++..|++++.+|
T Consensus 259 ~d~~-g~~~-----~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPI-----GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEE-----EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred ECCC-CCEE-----EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence 9984 3321 22222221 45566676 8887777666654
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.1e-12 Score=128.62 Aligned_cols=234 Identities=9% Similarity=0.043 Sum_probs=160.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+++ +++.+++...++.|.+||..+++.+.++... .. ...+++.+. + .+++
T Consensus 50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~------------------p~~i~~~~~---------g-~lyv 99 (328)
T 3dsm_A 50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TS------------------PRYIHFLSD---------E-KAYV 99 (328)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SS------------------EEEEEEEET---------T-EEEE
T ss_pred EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CC------------------CcEEEEeCC---------C-eEEE
Confidence 553 3444555556799999999999998877421 11 112333221 4 4566
Q ss_pred EE-CCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 92 ~~-~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+. .++.|.+||+.+++....+..+. ......+++ ++..++.++ .++.|.+||+.+++.+.++... .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~ 176 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS 176 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence 65 78999999999998876654332 114566777 455555555 4889999999999988887653 35678
Q ss_pred EEEccCCCEEEEECC------------eEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 165 l~~~p~g~~l~~~~g------------~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
++++|+|++++++.+ .|.+||..+++....+... ......++|+|++++++++. +.|.+||..+
T Consensus 177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t 253 (328)
T 3dsm_A 177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEA 253 (328)
T ss_dssp CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES---SSEEEEETTC
T ss_pred eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc---cEEEEEECCC
Confidence 999999998777653 6999999999887777532 23678999999999888764 2899999988
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEE----EcCCeEEEEECCCceeeccc
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAI----SETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~ 290 (579)
++.... .. ..........++++ | ++...++. ..++.|.+||.+ ++.+..+
T Consensus 254 ~~~~~~-~~--~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 254 DRVPVR-PF--LEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SSCCSS-CS--BCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred Cceeee-ee--ecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 764310 11 11113345566776 7 45555555 568899999988 7776554
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=1.5e-13 Score=148.71 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=149.6
Q ss_pred EEc--cCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 12 ~fs--~dg~~-las~s~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.|+ |||++ |+.++. +..|.+|+.. + +. ...+..... .........+.|.+.
T Consensus 83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD-------- 140 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE-------- 140 (662)
T ss_dssp EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence 455 99998 887664 5667777765 2 43 333332100 000112345556554
Q ss_pred CCcEEEEEECC----------CeEEEEEccC------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC--------Cc
Q 008058 85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------GM 140 (579)
Q Consensus 85 ~~~~l~~~~~~----------g~i~iwd~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d--------g~ 140 (579)
++.|++++.+ ..|++||+.+ ++.. .+...+...+..++|+|||++|+.++.+ ..
T Consensus 141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 7778887766 5799999988 5543 4431455678899999999999888755 37
Q ss_pred EEEEeCC-CC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--C--eEEEEECCCCeeeEEeecCCCC--------EEE
Q 008058 141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF 204 (579)
Q Consensus 141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g--~i~vwd~~~~~~~~~~~~h~~~--------v~~ 204 (579)
|++||+. ++ +.......+...+..++|+|||+++++++ + .|++||+.+++......++... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444455577899999999999777776 4 7888887777654333333222 567
Q ss_pred EEEecCCCEEEEEecCCCeEEEE--EcCCCccccceeEEeeecCceeeEeE-EecCCcccCCCcEEEEEEcCC--eEEEE
Q 008058 205 MTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCR-CIDNGGVDDAGLYVLAISETG--VCYIW 279 (579)
Q Consensus 205 l~~~~~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg--~i~iw 279 (579)
++|+|++++++++. . +.+++| |+.+++. ..+..+...+..+ .++ ++...+++++.+. .|++|
T Consensus 299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 299 FAPLANGLIAVVHG-K-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVS-----GTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEECTTSCEEEEEB-S-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEE
T ss_pred EeEeCCCEEEEEEE-c-CccEEEEEECCCCcE------EEecCCCCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEE
Confidence 89999999888776 6 888999 5444431 2333333334434 332 3333334444454 46666
Q ss_pred ECCCcee
Q 008058 280 YGQNIEE 286 (579)
Q Consensus 280 d~~~~~~ 286 (579)
|..+++.
T Consensus 366 d~~~g~~ 372 (662)
T 3azo_A 366 DTVTGRA 372 (662)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 7666654
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=1.8e-12 Score=141.23 Aligned_cols=202 Identities=8% Similarity=-0.029 Sum_probs=138.2
Q ss_pred cceEEeeecccccccccCCcEEEEEECCC-----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc--
Q 008058 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-- 140 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~-- 140 (579)
.....|.|. ++.|+.+...+ .|++||+.+++....... + ..+.+++|+|||+.|+.++.++.
T Consensus 127 ~~~~~~SPD---------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 127 LRGYAFSED---------GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEECTT---------SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred EEEEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccc
Confidence 445666643 67777666543 799999999987654322 2 23678999999999999888766
Q ss_pred --------------EEEEeCCCCcee--eEeec--CCCCeeEEEEccCCCEEEEEC-------CeEEEEECCC------C
Q 008058 141 --------------VCEIDPLTGSLL--GKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------H 189 (579)
Q Consensus 141 --------------v~iwd~~~~~~~--~~~~~--~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~------~ 189 (579)
|++|++.+++.. ..+.. +...+..+.|+|||++|+.++ ..|++||+.+ +
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 999999887632 22332 345678999999999888764 3799999986 4
Q ss_pred e-eeEEeecCCCCEEEEEEecCCCEEEEEecCC---CeEEEEEcCCCccccceeEEeeecCc-eeeEeEEecCCcccCCC
Q 008058 190 K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 190 ~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 264 (579)
. ....+..+...+.. .|+|+|+.|+..+..+ ..|.+||+.++....... ...+.. ..+..+.+. +++
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~~~~~-----~~~ 347 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACV-----RSN 347 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCEEEEEEEE-----TTT
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee--ccCCCCCCeEEEEEEE-----cCC
Confidence 3 45667777766655 5889999888776433 369999998764211111 122322 355656665 677
Q ss_pred cEEEEEEcCCe--EEEEECCCceeec
Q 008058 265 LYVLAISETGV--CYIWYGQNIEELR 288 (579)
Q Consensus 265 ~~l~s~~~dg~--i~iwd~~~~~~~~ 288 (579)
.++++...||. |++|++.+++.+.
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEE
Confidence 88888888884 5666776665443
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=5.3e-13 Score=132.03 Aligned_cols=218 Identities=10% Similarity=0.023 Sum_probs=140.9
Q ss_pred eEEEEccCCCEEEEEeCC---C--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++|||||++||+++.+ + .|.+|++.+++......... ...+.|.|.
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------------~~~~~wspd------- 114 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--------------------IRSLEWNED------- 114 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--------------------EEEEEECTT-------
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--------------------ccceeECCC-------
Confidence 345999999999988754 3 47888988887654432111 334555443
Q ss_pred cCCcEEEEEEC---------------------------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe
Q 008058 84 LGSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG 136 (579)
Q Consensus 84 ~~~~~l~~~~~---------------------------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~ 136 (579)
+..|+.++. ...|.+||+.+++.+..+.. . .+..+.|+||| .+++++
T Consensus 115 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 115 --SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp --SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred --CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence 555666653 25699999999887434433 3 78899999999 777776
Q ss_pred CCC-------cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCC
Q 008058 137 ADG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHP 199 (579)
Q Consensus 137 ~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----------g~i~vwd~~~~~~~~~~~~h~ 199 (579)
.++ ...+|.+.+++. ..+..+ ..+..+ +|||+.|+.++ ..|++|| +++......+|.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~ 262 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD 262 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence 542 334443335544 334434 455544 99999887654 2688888 555444445667
Q ss_pred CCEEE-EEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeE-E
Q 008058 200 GAVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-Y 277 (579)
Q Consensus 200 ~~v~~-l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i-~ 277 (579)
..+.. +.|+ ++ .+++++ .++.+++| +.+++. .....+ ...+..+.++ | ..+++++.++.. .
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~ 325 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLRE 325 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCE
T ss_pred cccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHH
Confidence 78886 8999 88 777766 68999999 874331 122223 4455667776 6 677777777654 7
Q ss_pred EEECC
Q 008058 278 IWYGQ 282 (579)
Q Consensus 278 iwd~~ 282 (579)
+|.++
T Consensus 326 l~~~~ 330 (347)
T 2gop_A 326 LFTWD 330 (347)
T ss_dssp EEEES
T ss_pred heEeC
Confidence 77665
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.55 E-value=5.4e-12 Score=132.10 Aligned_cols=193 Identities=14% Similarity=0.112 Sum_probs=149.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~ 163 (579)
+.++++...++.|.++|..+++.+.++..+ ..+..+.|+|||+++++++.|+.|.+||+. +++.+.++... ....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~ 243 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR 243 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence 345666667889999999999998777433 467899999999999999999999999996 78888887753 3568
Q ss_pred EEEEc----cCCCEEEEEC---CeEEEEECCCCeeeEEeec----------CCC-CEEEEEEecCCCEEEEEecCCCeEE
Q 008058 164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 164 ~l~~~----p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
.++|+ |||+++++++ ++|.++|..+.+.+.++.. |.. .+..+.+++++..++.....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 6999999887 8999999999998887652 112 5788999998877666666789999
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeeccc
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 290 (579)
++|....+.. .+..+.. ........|+ |+|+++++++ .++.|.++|..+++.+...
T Consensus 324 ~vd~~~~~~~---~v~~i~~-~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 324 LVDYTDLNNL---KTTEISA-ERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEETTCSSEE---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEecCCCccc---eeeeeec-cccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 9998876432 2222222 2334456676 9999987776 5889999999999866443
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.3e-12 Score=124.42 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=146.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~ 164 (579)
+++|++++.++.|.+||..+|+.++++..+....+.++.+.|+|+.++ +.++.|+.||. +|+.+..+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 678999999999999999999999888543225789999999999888 35788999998 899999988753 47889
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
+.+.|+|+++++.+ +.|..+|. +++.+.++.. +......+.+.++|+++++.. .++.|..||.. ++..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence 99999999999875 36666664 6777777642 223455677899999998876 79999999988 6633
Q ss_pred cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
.....+..... .... ++|..+++++.+++|..||.++++.+....
T Consensus 159 -----w~~~~~~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 159 -----NSVKLSGTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp -----EEEECSSCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred -----EEEECCCCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 34443333333 3333 799999999888899999999998876553
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=1e-12 Score=142.90 Aligned_cols=236 Identities=9% Similarity=-0.004 Sum_probs=152.0
Q ss_pred eEEEEccCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAIC-----SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~-----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++|||||++||.+ +.+.+|++||+.+|+... ..+.. ......+.|.+.
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~----------------~~~~~~~~wspD------- 178 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIE----------------GGKYATPKWTPD------- 178 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBS----------------CCTTCCCEECTT-------
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccC----------------cccccceEEecC-------
Confidence 455999999999944 345689999999887531 10000 001134566654
Q ss_pred cCCcEEEEEECCCe-------------EEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEE
Q 008058 84 LGSSLLVLGTGGGD-------------VLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVC 142 (579)
Q Consensus 84 ~~~~~l~~~~~~g~-------------i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg----~v~ 142 (579)
+..|+.++.+.. |++|++.++. .+.. ...|...+.++.|+|||++|+.++.++ .|+
T Consensus 179 --g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 179 --SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp --SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred --CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 677888887665 9999998876 2222 234556889999999999988877666 677
Q ss_pred EEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee--eEEeecC--CCCEEEEEEecCCCE
Q 008058 143 EIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKFSGH--PGAVRFMTFSDNGKY 213 (579)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~--~~~~~~h--~~~v~~l~~~~~~~~ 213 (579)
+||..+++ ...+..+...+....+ ++|.+++.+. +.|.+||+.+++. ...+..| ...+..+.|+ ++..
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 88765554 3445555556666666 5666555443 6899999987653 2344333 4457888888 5556
Q ss_pred EEEEecCCCeEEEEEcCC-CccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEE----cCCeEEEEECCCcee
Q 008058 214 VLSSAVGERYIALWRTDG-VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS----ETGVCYIWYGQNIEE 286 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~ 286 (579)
+++.. .|+..++|.+.. ++. ...+..+ ...+..+.++ |++..++... ..++|++||+.+++.
T Consensus 333 v~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 333 SLEYL-KDATSEVRVATLKGKP-----VRTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE-ETTEEEEEEEETTCCE-----EEECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE-ECCEEEEEEEeCCCCe-----eEEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66655 689888886652 221 1222222 3334444555 7887776433 357899999988753
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=2e-12 Score=140.48 Aligned_cols=236 Identities=10% Similarity=-0.006 Sum_probs=146.9
Q ss_pred EccCCCEEEEEeCCC---cEEEE--ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 13 fs~dg~~las~s~dg---~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+|+|++++....++ .-.+| +...+.....+. ... +..+| ........|.|. ++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d-~~~----------~a~~~-~~~~~~~~~SPD---------G~ 133 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLD-PNG----------WSKDG-TVSLGTWAVSWD---------GK 133 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEEC-GGG----------SSSSS-CEEEEEEEECTT---------SS
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEc-hHH----------hccCC-CEEEEEEEECCC---------CC
Confidence 458999988877643 33445 444443322221 000 01122 123445556543 66
Q ss_pred EEEEEEC-----CCeEEEEEccCCeEEEEecCCCCCCE--EEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008058 88 LLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAGADGM-------------VCEIDPL 147 (579)
Q Consensus 88 ~l~~~~~-----~g~i~iwd~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~dg~-------------v~iwd~~ 147 (579)
.|+.+.. +..|++||+.+++.+. ..+...+ .+++|+|||+.|+.++.|.. |++|++.
T Consensus 134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~ 210 (695)
T 2bkl_A 134 KVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG 210 (695)
T ss_dssp EEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT
T ss_pred EEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC
Confidence 6664432 3469999999998641 1122222 68999999999999988776 9999998
Q ss_pred CCc----eeeEeecCCCCeeEEEEccCCCEEEEEC--C----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058 148 TGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 148 ~~~----~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 217 (579)
++. .+.....+...+.++.|+|||++|+.++ + .|++|+..+++ ...+..+...+....+ ++|. ++..
T Consensus 211 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~ 287 (695)
T 2bkl_A 211 TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVL 287 (695)
T ss_dssp SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEE
T ss_pred CCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEE
Confidence 876 2223333445788999999999888765 4 77888766554 4455556666666666 6666 5555
Q ss_pred ec---CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 218 AV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 218 s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
+. .++.|.+||+.++.......+. ..++...+..+.+. ++..+++...||..++|.++
T Consensus 288 s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 288 TDEGAPRQRVFEVDPAKPARASWKEIV-PEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp ECTTCTTCEEEEEBTTBCSGGGCEEEE-CCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCCCEEEEEeCCCCCccCCeEEe-cCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 53 2578999999876431111111 12224455555664 56788888999988888654
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=9.5e-12 Score=120.06 Aligned_cols=189 Identities=8% Similarity=-0.018 Sum_probs=132.1
Q ss_pred ceEEeeecccccccccCCc-EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 69 TCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~-~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
..++|.+. ++ +++++..++.|..||..++ ...+ ..+...+.+++++|+|+++++...++.|.+||..
T Consensus 31 eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 31 EGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred cCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 35666654 44 7888888999999999988 3333 3466789999999999987777677899999998
Q ss_pred CCceeeEeecC----CCCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEE
Q 008058 148 TGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (579)
Q Consensus 148 ~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-------------------g~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (579)
+++........ ...+..++++|+|+++++.. +.|+.++.. ++ +..+..+......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence 88754433221 22567899999999888721 356666654 43 4455566777899
Q ss_pred EEEecCCCEEEEEecCCCeEEEEEcC-CCcc-ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 205 MTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 205 l~~~~~~~~l~s~s~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
++|+|+++.+++. ..++.|.+|++. .++. . ....+ .........++++ ++|++.++. ++.|.+||.+
T Consensus 177 i~~s~dg~~lv~~-~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 177 LAFLPSGNLLVSD-TGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEECTTSCEEEEE-TTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECTT
T ss_pred EEECCCCCEEEEe-CCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECCC
Confidence 9999999988544 468899999997 3332 1 01122 2223334556776 888866555 7889999864
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=1.5e-11 Score=119.55 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=154.6
Q ss_pred EEEEccCCCEEEE-------EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 10 ~~~fs~dg~~las-------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++|+++|+++++ +..++.|.+||..+++... +.... ..++ ......+.+.+.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~------------~~~~-~~~~~~i~~~~~------ 81 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPE------------VNGY-GGIPAGCQCDRD------ 81 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCE------------ETTE-ECCEEEEEECSS------
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecc------------cCCC-CCCCceEEEecC------
Confidence 4589999988777 5678899999988887643 21100 0011 112234444432
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEE-ecC--C-CCCCEEEEEEccCCCEEEEEeCC---------------CcEEE
Q 008058 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSD--C-HPGGVSAISFATHGSCIYSAGAD---------------GMVCE 143 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~--~-h~~~V~~l~~~~~~~~l~s~~~d---------------g~v~i 143 (579)
+..+.+++..+.|.+||.. ++.... ... + ....+.+++++++|+.+++...+ +.|..
T Consensus 82 ---~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ---ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp ---SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred ---CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 2456677766689999998 765422 111 1 12358899999999877776555 57888
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEc----cCCCEEEEE-C--CeEEEEECC-CCe-----eeEEeecCC-CCEEEEEEec
Q 008058 144 IDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFSD 209 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~----p~g~~l~~~-~--g~i~vwd~~-~~~-----~~~~~~~h~-~~v~~l~~~~ 209 (579)
||.. ++..... .+......++++ |+|+.++.+ . +.|.+||.. +++ ....+.++. ..+..+++++
T Consensus 158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 8865 5543332 233456889999 999766554 3 799999986 444 233344444 5678999999
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC
Q 008058 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 283 (579)
+|+.+++.. .++.|.+||..+++.. .....+......++++ ++|++|++++ .++.|..|+...
T Consensus 236 ~G~l~v~~~-~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEc-CCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence 998877765 5889999998865533 1223333455667776 8998665554 568999998764
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=1.8e-11 Score=119.92 Aligned_cols=223 Identities=10% Similarity=0.026 Sum_probs=151.5
Q ss_pred CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008058 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (579)
Q Consensus 25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~ 104 (579)
.++.|.+||..+++....+.... +. ..+......+... ++.+.++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---n~---------~~lg~~~~~i~~~----------~~~lyv~~~~~~~v~viD~~ 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---NG---------FKLGDVAQSMVIR----------DGIGWIVVNNSHVIFAIDIN 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---HS---------SCCBSCEEEEEEE----------TTEEEEEEGGGTEEEEEETT
T ss_pred CCceEEEEECCCCEEhhhhHhhh---cC---------cccCccceEEEEE----------CCEEEEEEcCCCEEEEEECc
Confidence 37899999999998765432100 00 0001111122221 14445555567899999999
Q ss_pred CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCC-----CCeeEEEEccCCCEEEEE-
Q 008058 105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA- 177 (579)
Q Consensus 105 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~g~~l~~~- 177 (579)
+++.+.++. .......++++++++ ++.+. .++.|.+||+.+++....+.... .....+++ .+++++++.
T Consensus 73 t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred ccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence 999987773 346789999999984 55554 78999999999998887776433 14567777 455555554
Q ss_pred --CCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeEEeeec
Q 008058 178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 178 --~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
++.|.+||..+++.+.++.... ....+.++|+|++++++. .+ +.|.+||..+++.. .......
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~ 223 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL 223 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred CCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence 2799999999999888876433 457899999998766654 44 78999999887633 1122211
Q ss_pred CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 286 (579)
......++++ |++++++++.. .|.+||..+++.
T Consensus 224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence 2234567776 88999888765 899999877654
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.45 E-value=1.7e-10 Score=111.02 Aligned_cols=232 Identities=8% Similarity=-0.014 Sum_probs=153.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++++++|+++++...++.|.+||.. +.... +..... ......+++.+. +.+
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~----------------~~~~~~i~~~~~---------g~l 70 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTP----------------DAKVMCLTISSD---------GEV 70 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSST----------------TCCEEEEEECTT---------SCE
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcc----------------cCceeeEEECCC---------CCE
Confidence 455999999977766667899999987 55432 221100 011223333321 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||. +++.... .......+.++++
T Consensus 71 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 71 WFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 5555557889999986 44321112234567999999999987777777889999998 5654332 2223457899999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+++|+++++.. +.|..||. +++.... +..+...+..++++++|+.+++.. .++.|.+|+. +++.. .....
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 221 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----EFKIP 221 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----EEECC
Confidence 99998888775 79999998 6654432 333456688999999998766554 5789999998 54422 12222
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
........+.++ ++|...++...++.|..||.
T Consensus 222 ~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 TPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred CCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence 233445566676 78886665557889999987
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.4e-10 Score=111.89 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=132.3
Q ss_pred eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008058 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 149 (579)
...|.+.+ +.++++...++.|+.||..+++.. .+ .....+.+++++|+|+++++ . ++.|.+||..++
T Consensus 17 gp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 17 SPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp EEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred CCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 56676543 566777777889999999988763 22 23467999999999995444 4 567999999887
Q ss_pred ceeeEeecC----CCCeeEEEEccCCCEEEEEC-----------CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCE
Q 008058 150 SLLGKFRAS----TKGISCMAVSSDGKMLATAA-----------GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 150 ~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-----------g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~ 213 (579)
+........ ...++.++++|+|+++++.. ....+|.+.. ++. ..+..+....+.++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCE
Confidence 654332221 23578999999999777652 1234444432 333 233334455789999999998
Q ss_pred EEEEecCCCeEEEEEcC--CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 214 VLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 214 l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
++.+...++.|.+|++. ++..........+.........++++ ++|++.++...++.|..||.++++.+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 87666568899999974 44322111222332223345666776 889877777778899999987776543
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=3.6e-11 Score=131.62 Aligned_cols=236 Identities=11% Similarity=0.018 Sum_probs=148.1
Q ss_pred eEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
-.++|||||++||.++.+ .+|++||+.+|+.+.... .. .....+.|.+.
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~------------------~~~~~~~wspD------- 219 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KW------------------VKFSGLAWLGN------- 219 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EE------------------EESCCCEESTT-------
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CC------------------ceeccEEEECC-------
Confidence 345999999999987653 369999999998754211 00 01124556542
Q ss_pred cCCcEEEEEECCC--------------eEEEEEccCCeE--EEEe-cCCCCCCEEEEEEccCCCEEEEEeCCC-----cE
Q 008058 84 LGSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MV 141 (579)
Q Consensus 84 ~~~~~l~~~~~~g--------------~i~iwd~~~~~~--~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg-----~v 141 (579)
+.|+.++.++ .|++|++.++.. ...+ ...+...+.++.|+|||++|+..+.++ .|
T Consensus 220 ---~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 ---DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTV 296 (741)
T ss_dssp ---SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred ---CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence 2355555443 399999977652 1111 123334689999999999988777544 89
Q ss_pred EEEeCCCC--ceeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCC--eeeEEeecCCCCEEEEEEecCC
Q 008058 142 CEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNG 211 (579)
Q Consensus 142 ~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~ 211 (579)
++||+.++ +....+..+...+.... +|+|+.|+..+ +.|.+||+.++ +....+..+...+..+.|+ ++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 99999877 31455555555555543 48888877654 46999999874 3333445555556677877 44
Q ss_pred CEEEEEecCCCeEEEEEcC-CCccccceeEEeeec-CceeeEeEEecCCcccCCCcEEEEE-E---cCCeEEEEECCCce
Q 008058 212 KYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIE 285 (579)
Q Consensus 212 ~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~-~---~dg~i~iwd~~~~~ 285 (579)
..+++.. .|+..++|.+. .++. ...+.. ....+....++ |++..|+.. + ..++|++||+.+++
T Consensus 375 ~lv~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 375 RLFASYI-HDAKSQVLAFDLDGKP-----AGAVSLPGIGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSCE-----EEECBCSSSCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE-ECCEEEEEEEeCCCCc-----eeeccCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4555554 68887777654 2221 122322 23344556665 777755533 2 35799999998876
Q ss_pred e
Q 008058 286 E 286 (579)
Q Consensus 286 ~ 286 (579)
.
T Consensus 444 ~ 444 (741)
T 1yr2_A 444 T 444 (741)
T ss_dssp E
T ss_pred E
Confidence 3
No 198
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=2.3e-10 Score=115.42 Aligned_cols=233 Identities=11% Similarity=0.028 Sum_probs=150.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|+|+|+++++...++.|++||..++........... . +++|.+. +..
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-------------------~-~ia~~~~---------g~~ 184 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-------------------G-KPAVTKD---------KQR 184 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-------------------C-BCEECTT---------SSE
T ss_pred eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-------------------C-ceeEecC---------CCc
Confidence 4569999999777777789999999988877654432111 1 1344332 667
Q ss_pred EEEEECCC--eEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE----eecCC
Q 008058 89 LVLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAST 159 (579)
Q Consensus 89 l~~~~~~g--~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~ 159 (579)
++++..++ .|.+|+...+.....+ ...+...+.+++++|++..|+.+..++.|+.||..++..... ..++.
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 78877765 7999998876543222 122446678999999666677777889999999987753222 12222
Q ss_pred CCe-e-EEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCC---------------CCEEEEEEecCCCEEEEEec
Q 008058 160 KGI-S-CMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 160 ~~v-~-~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~---------------~~v~~l~~~~~~~~l~s~s~ 219 (579)
..- . .++|+|+ +.++++-. +.|+.|+.... +..+.++. .....++++|+|+.+++ ..
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva-d~ 341 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV-DG 341 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE-ET
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE-eC
Confidence 221 3 9999996 54444444 79999987643 33444432 34789999999985544 44
Q ss_pred -CCCeEEEEEcCCCccccceeEEeeec------------CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 220 -GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 220 -~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
.++.|+.|++.++... .+..... .-.....++++ ++|.++++-..+++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence 5889999997766422 1111000 01224556665 77777777777788887764
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=5e-10 Score=107.70 Aligned_cols=233 Identities=8% Similarity=0.024 Sum_probs=148.2
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++++|+++++...++.|..||.. ++. ..+.... . ......+.+.+. +.+
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---------------~-~~~~~~i~~~~~---------g~l 112 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN---------------P-DSAPYGITEGPN---------GDI 112 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---------------c-CCCceeeEECCC---------CCE
Confidence 455899999987777768889999976 443 2222100 0 011223333321 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|..||. +++........+...+.++++.++|+..++...++.|..||. +++.... .......+.++++
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 190 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK 190 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence 555556788999998 665543333334567899999999987777767789999998 6665432 2333456889999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+++|++.++.. +.|.+||. +++.... ...+...+.+++++++|+.+++.. .++.|..||.. +... .+...
T Consensus 191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~ 263 (299)
T 2z2n_A 191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQ 263 (299)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECS
T ss_pred CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCC
Confidence 99999877774 79999998 6654321 233456789999999998666553 57899999983 3211 12222
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
........+.+ ++|...++.. .+.+..++.++.
T Consensus 264 ~~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence 22223333443 3666555544 677888876654
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.39 E-value=1e-09 Score=109.19 Aligned_cols=186 Identities=8% Similarity=-0.109 Sum_probs=124.4
Q ss_pred EEccCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 12 ~fs~dg~~las~s~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
...|+++++..... .+ +|.+||..+++.+..+.....+ .+.++++ +
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD---------------------------g 77 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS---------------------------G 77 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC---------------------------C
Confidence 45688887776653 22 8899999999988777643222 4555554 7
Q ss_pred cEEEEEE----------CCCeEEEEEccCCeEEEEecCC------CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCC
Q 008058 87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT 148 (579)
Q Consensus 87 ~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~ 148 (579)
+.++++. .++.|.+||..+.+.+.++..+ +......+.|+|||++|+.++. ++.|.++| .+
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 7777776 3577999999998877665322 0123568999999999998874 57899999 99
Q ss_pred CceeeE-eecCCCCeeEEEEccCCCEE-EEEC--CeEEEEECCCCeeeEEee-----cCCCCE-EEEEEecCCCEEEEEe
Q 008058 149 GSLLGK-FRASTKGISCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFS-----GHPGAV-RFMTFSDNGKYVLSSA 218 (579)
Q Consensus 149 ~~~~~~-~~~~~~~v~~l~~~p~g~~l-~~~~--g~i~vwd~~~~~~~~~~~-----~h~~~v-~~l~~~~~~~~l~s~s 218 (579)
++.+.. +.... ++.+.|+++.. ++.+ |.+.++|. +++.+.... ....++ ....+.+++..++..+
T Consensus 157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 988877 65322 34556666432 3332 89999999 877663321 112222 2346677766555555
Q ss_pred cCCCeEEEEEcCCCc
Q 008058 219 VGERYIALWRTDGVK 233 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (579)
.++.+.+.|+....
T Consensus 232 -~~~~v~vid~~~~~ 245 (373)
T 2mad_H 232 -YSGKILQADISAAG 245 (373)
T ss_pred -CCceEEEEeccCCc
Confidence 57899999987653
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=5.1e-11 Score=130.38 Aligned_cols=184 Identities=12% Similarity=0.016 Sum_probs=121.7
Q ss_pred CcEEEEEECC-C----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc--------------EEEEeC
Q 008058 86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--------------VCEIDP 146 (579)
Q Consensus 86 ~~~l~~~~~~-g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~--------------v~iwd~ 146 (579)
++.|+.++.+ | .|++||+.+++.+.... +...+.+++|+|| +.|+.++.++. |++|++
T Consensus 174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l 250 (741)
T 1yr2_A 174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL 250 (741)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence 6667766544 3 59999999998764321 1122357899999 98888876654 899999
Q ss_pred CCCce--eeEeec--CCCCeeEEEEccCCCEEEEEC--C-----eEEEEECCCC--eeeEEeecCCCCEEEEEEecCCCE
Q 008058 147 LTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 147 ~~~~~--~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g-----~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~ 213 (579)
.++.. ...+.. +...+..+.|+|||++|+..+ + .|++||+.++ +....+..+...+.... +|+|+.
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence 77752 223332 223588999999999888665 2 8999999887 31556666665555553 488888
Q ss_pred EEEEecC---CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 214 VLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 214 l~s~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
|+..+.. ++.|.+||+.++. .. ......+....+..+.+. ++..+++...||..+||..+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 8887632 3459999987742 11 111223444445545553 56778888889987777543
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=1e-09 Score=109.18 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=153.1
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++|||||++++.+. .++.|.+||..+++.+..+........ ........+.|.+.
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-----------~~g~~p~~~~~spD---- 135 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------DVGPYSWMNANTPN---- 135 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-----------ccCCCccceEECCC----
Confidence 49999999998876 367899999999888877653200000 00000112333332
Q ss_pred ccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
+++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 777888774 47799999 99988766 532 12 24455655 34667778999999999 887663322
Q ss_pred -----cCCCC-eeEEEEccCCCE-EEEEC-CeEEEEECCCCe--eeEEeec----------CCCCEEEEEEecCCCEEEE
Q 008058 157 -----ASTKG-ISCMAVSSDGKM-LATAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 157 -----~~~~~-v~~l~~~p~g~~-l~~~~-g~i~vwd~~~~~--~~~~~~~----------h~~~v~~l~~~~~~~~l~s 216 (579)
....+ .....+.+++.. ++... +.+.+.|+.++. .+..+.- .......+.++|+++.+++
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence 11122 123456666544 33334 899999987552 2333321 1122445789999988877
Q ss_pred Eec---------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEE-cCCeEEEEECCCce
Q 008058 217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 217 ~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~ 285 (579)
+.. .++.|.++|..+.+.. ..+.... ....+.|+ |||+ .++++. .++.|.+||..+++
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~~i~~g~-~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEE-----EEEECCC-CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 642 1357999999887643 2333222 23456676 9999 777777 48999999999998
Q ss_pred eecc
Q 008058 286 ELRN 289 (579)
Q Consensus 286 ~~~~ 289 (579)
.+..
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 8765
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=1e-10 Score=126.78 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=150.2
Q ss_pred EEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 10 LTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.++|||||++||.+. .+.+|++||+.+|+.+.... . ......+.|. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~-----------------~~k~~~~~Ws-D-------- 184 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--K-----------------DVKFSGISWL-G-------- 184 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--E-----------------EEESCCCEEE-T--------
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--C-----------------CceeccEEEe-C--------
Confidence 348999999999643 23579999999998654210 0 0012345565 3
Q ss_pred CCcEEEEEECCC-------------eEEEEEccCCeE--EEEe-cCC-CCCCEEEEEEccCCCEEEEEeC----CCcEEE
Q 008058 85 GSSLLVLGTGGG-------------DVLALAVSAGQL--KWRL-SDC-HPGGVSAISFATHGSCIYSAGA----DGMVCE 143 (579)
Q Consensus 85 ~~~~l~~~~~~g-------------~i~iwd~~~~~~--~~~~-~~~-h~~~V~~l~~~~~~~~l~s~~~----dg~v~i 143 (579)
++.|+.++.+. .|++|++.++.. ...+ ... |...+.++.|+|||++|+.... +..|++
T Consensus 185 -g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 -NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp -TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred -CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 56677777663 399999987642 1111 122 4456789999999998755432 248999
Q ss_pred EeCCCCc-eeeEeecCCCCeeEEEEccCCCEEE-EEC-----CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEE
Q 008058 144 IDPLTGS-LLGKFRASTKGISCMAVSSDGKMLA-TAA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 144 wd~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~-~~~-----g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l 214 (579)
+|+.++. ....+..+....... ++++|..|+ .+. +.|..+|+.++.. ...+..|...+. .|++++++|
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9998764 445566566555554 666666554 443 5799999988654 456666766665 899999998
Q ss_pred EEEecCCC--eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC----CeEEEEECCCce
Q 008058 215 LSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIE 285 (579)
Q Consensus 215 ~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~ 285 (579)
+.....++ .|++|++..+... ...+.... .+....++ +++..++....+ ++++.||+.+++
T Consensus 341 v~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~-~~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGKRVR----EVALPGLG-SVSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEETTEEEEEEECTTSCEEE----EECCSSSS-EEEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCeeEEEEEECCCCeeE----EeecCCCc-eEEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 88775555 6888888754321 12222222 23333333 677766666554 799999988765
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=3e-10 Score=111.55 Aligned_cols=239 Identities=13% Similarity=0.128 Sum_probs=158.3
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEecccc-------ccccccccccccccccccCccceEEe
Q 008058 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
+++||||++++.++ .++.|.+||..+++.+.++.... .....+.|+++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD--------------- 147 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD--------------- 147 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence 49999999887765 36789999999999988875322 12333444444
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cc
Q 008058 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS 150 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~ 150 (579)
+++++++.. ++.|.++|+.+++.+.++... .. ...+....+.+++.+.||.+.+.++.+ ++
T Consensus 148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 777888764 688999999999998777422 12 223333456677888899999999876 55
Q ss_pred eeeEeecC----CCCe-eEEEEc-cCCCEEEEEC-CeEEEEECCCCe--eeEEee----------cCCCCEEEEEEecCC
Q 008058 151 LLGKFRAS----TKGI-SCMAVS-SDGKMLATAA-GQLKTFNCSDHK--KMQKFS----------GHPGAVRFMTFSDNG 211 (579)
Q Consensus 151 ~~~~~~~~----~~~v-~~l~~~-p~g~~l~~~~-g~i~vwd~~~~~--~~~~~~----------~h~~~v~~l~~~~~~ 211 (579)
...+...+ ..++ ....|. ++|++++... |.|++.|+.+.. .+..+. ........++++|++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 43322111 1222 224664 7887766666 999999997653 333332 011233457789999
Q ss_pred CEEEEEecC---------CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEc-CCeEEEEE
Q 008058 212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISE-TGVCYIWY 280 (579)
Q Consensus 212 ~~l~s~s~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~-dg~i~iwd 280 (579)
+.++..... .+.|.+.|+.+.+.. ....... ....+.++ +|++ +|+++.. ++.|.++|
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---~~i~vg~---~~~~lavs-----~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---AKFEMGH---EIDSINVS-----QDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEE---EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEE---EEEECCC---CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence 888776421 257999999998754 2222222 33456666 8986 6777654 89999999
Q ss_pred CCCceeecccC
Q 008058 281 GQNIEELRNTK 291 (579)
Q Consensus 281 ~~~~~~~~~~~ 291 (579)
..+++.+++.+
T Consensus 361 ~~t~k~~~~i~ 371 (386)
T 3sjl_D 361 AESGEELRSVN 371 (386)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCcEEEEec
Confidence 99999887654
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=4.5e-10 Score=109.07 Aligned_cols=191 Identities=10% Similarity=0.077 Sum_probs=124.9
Q ss_pred CcEEEE-------EECCCeEEEEEccCCeEEEEec---CCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058 86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~-------~~~~g~i~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (579)
+.++++ ++.++.|.+||..+++...... .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI 106 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence 555555 4778899999998887642221 124567999999999 65 4444445579999987 665432
Q ss_pred -eec----CCCCeeEEEEccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEe----
Q 008058 155 -FRA----STKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---- 208 (579)
Q Consensus 155 -~~~----~~~~v~~l~~~p~g~~l~~~~-----------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---- 208 (579)
... ....+.+++++|+|+++++.. +.|..||.. ++... +..+......++|+
T Consensus 107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d 184 (314)
T 1pjx_A 107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTT
T ss_pred EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccC
Confidence 221 123588999999999888775 256667665 54433 33344557889999
Q ss_pred cCCCEEEEEecCCCeEEEEEcC-CCccccceeEEeeecCc-eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 209 ~~~~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
|+++.++.+...++.|.+|+.. .++.........+.... .....++++ ++|...++...++.|.+||.++++
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 9997766665467899999986 33221111112222221 334556676 889888887788999999876553
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=1.9e-09 Score=103.71 Aligned_cols=232 Identities=10% Similarity=0.039 Sum_probs=152.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++++|+.+++...++.|.+||.. ++... +.... . ......+.+.+. +.+
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l 75 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---------------P-DAKVMCLIVSSL---------GDI 75 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---------------C-CCcceeEEECCC---------CCE
Confidence 345899999977777678999999987 65443 22110 0 011223333321 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.++++
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 5554457889999988 655322223344679999999999877777668899999987 654422 2223457899999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+++|++.++.. +.|..||. +++... ....+...+..++++++|...++.. ..+.|.+|+. .++.. .....
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 226 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIP 226 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECC
Confidence 99999777764 78999998 554433 1223455688999999998766554 5678999998 33321 12222
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
........++++ ++|...++...++.|..||.
T Consensus 227 ~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 TPNARPHAITAG-----KNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence 223344566666 78886666556789999987
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=8.6e-11 Score=111.47 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=130.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++++++|+++++.. ++.|.+||..++... .+.... ......+++.+. +.++
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~-----------------~~~p~~i~~~~~---------g~l~ 122 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDG-----------------LNYPEGLAVDTQ---------GAVY 122 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCS-----------------CSSEEEEEECTT---------CCEE
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCC-----------------cCCCcceEECCC---------CCEE
Confidence 449999999666555 889999998765432 221100 011223333321 5555
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (579)
++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||...+........+...+.++++++
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 201 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence 55566788999976655443222 23334678999999998777766788999999876654433333335789999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 170 ~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
+|.++++.. +.|.+||............+...+.+++++++|+.+++.. .++.|.++++...+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence 998777775 7899999876544332223446789999999998666655 69999999987654
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=7.2e-10 Score=108.85 Aligned_cols=276 Identities=14% Similarity=0.016 Sum_probs=164.9
Q ss_pred CcEEEEEEC-----CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008058 86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~-----~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~ 150 (579)
+..+++... ++.|.++|..+++.+.++..+.. + . +.++|||++++.++ .++.|.+||..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 666777765 57899999999999888765443 3 4 99999999988876 36789999999999
Q ss_pred eeeEeecCC-------CCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058 151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 151 ~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
.+.++.... .....++++|||++++++. +.|.++|+.+++.+.++.... . ...+....+.+++.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~- 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC- 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence 988876432 2467799999999888764 689999999999998886322 1 223333445566665
Q ss_pred CCCeEEEEEcCC-CccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce--eecccC----
Q 008058 220 GERYIALWRTDG-VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK---- 291 (579)
Q Consensus 220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---- 291 (579)
.||.+.+.++.. ++... .....+. ..........|. .++|++++ .+.+|+++++|..+.. .+....
T Consensus 197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred CCCCEEEEECCCCCeEEE-eecceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 689888888876 43210 0000000 001111111221 15776554 6668999999987653 222111
Q ss_pred -----CceEEeeecccCcccccccchhhhhcccc---ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-
Q 008058 292 -----ATKILSSSEDVNSKSQKSATAAIFAAKLQ---DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV- 362 (579)
Q Consensus 292 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~- 362 (579)
+-...-.....+.++++ .++.+..+ +.-+.....+++.+-. ......++.... .++.+++++||+
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg~-~~~~lavs~D~~~ 344 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMGH-EIDSINVSQDEKP 344 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEE-EECEEEECSSSSC
T ss_pred ccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECCC-CcceEEECCCCCe
Confidence 00000000000122222 33332211 1111112355655533 334444443322 678999999997
Q ss_pred eeeccccceecccceeee
Q 008058 363 LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 363 ~l~~s~s~d~~~~~w~~~ 380 (579)
.|.++...++++.+.|..
T Consensus 345 ~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 552445557888888864
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=3e-09 Score=104.01 Aligned_cols=183 Identities=14% Similarity=0.022 Sum_probs=121.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG 161 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~ 161 (579)
+.++++...++.|..||..+++... +. ....+.++.|+|+|+++++. .+ .|++||..+++........ ...
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~ 135 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR 135 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCC
Confidence 5566777778899999999887542 21 34579999999999876654 44 4999999888754332211 135
Q ss_pred eeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--C
Q 008058 162 ISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--G 231 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~--~ 231 (579)
+..++++|+|+++++.. +.|+.++ +++.. .+..+......++|+|+++.++.+...++.|.+|++. +
T Consensus 136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~ 212 (326)
T 2ghs_A 136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART 212 (326)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc
Confidence 88999999999777653 3566666 45433 3333344578999999999876665567899999986 4
Q ss_pred C-ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 232 V-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
+ ..........+.........+.++ ++|.+.++...++.|.+||.
T Consensus 213 Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 213 GLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp CCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred CCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence 4 321111222222223344556666 78887766666788888876
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=2.3e-09 Score=103.32 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=137.2
Q ss_pred EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
..|+|++. .+++...++.|..||..++... .+.. .. ...++.+.+. +. +
T Consensus 18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~------------------~~~~i~~~~d---------G~-l 67 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-DA------------------PVSSVALRQS---------GG-Y 67 (297)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-SS------------------CEEEEEEBTT---------SS-E
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-CC------------------ceEEEEECCC---------CC-E
Confidence 47899655 4555556889999999887653 2221 11 2234444332 55 4
Q ss_pred EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEe
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~ 155 (579)
+++. ++.|.+||..+++...... .+ ....+++++++|+|+++++... .+.|+.+|.. ++... +
T Consensus 68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~ 144 (297)
T 3g4e_A 68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y 144 (297)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence 5555 5679999999887542221 11 2245889999999996665432 2345555542 43332 3
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC---CeEEEEEC--CCCee-----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~--~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
.......+.++|+|+++.++.+. +.|.+||+ .++.. +..+..+......++++++|++.++.. .++.|.
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~ 223 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVI 223 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEE
Confidence 33334568999999999776554 78999987 45532 223334446678999999998776665 578899
Q ss_pred EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
.||..+++.. ..+..+...+.+++|. .|+++.|++++.
T Consensus 224 ~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~ 261 (297)
T 3g4e_A 224 RLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA 261 (297)
T ss_dssp EECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred EEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence 9999877633 3344444455666674 156666666554
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=3.8e-09 Score=101.51 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=146.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++++|+++++...++.|..||.. ++.. .+.... . ......++..+. +.+
T Consensus 65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l 117 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDI 117 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCE
Confidence 455889999877776667889999987 6543 222110 0 011223333321 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|..||.. ++............+.++++.++|+..++...++.|..||. +++.... ...+...+.++++
T Consensus 118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 195 (300)
T 2qc5_A 118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS 195 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE
Confidence 5555557889999988 65542222334567899999999996666666788999998 5654432 2223447899999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+++|++.++.. +.|.+||. +++.... +..+...+.+++++++|+..++.. .++.|..|+.. ++.. .+...
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~-g~~~----~~~~~ 268 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRITND-NTIQ----EYQLQ 268 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECTT-SCEE----EEECC
T ss_pred CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEECCC-CcEE----EEECC
Confidence 99998877765 68999998 4443332 334456789999999998666553 57899999983 3311 12222
Q ss_pred cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 281 (579)
........+.++ ++|...++.. . .|..+|.
T Consensus 269 ~~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 269 TENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred ccCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence 222334555565 7877555544 4 7777764
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=3.3e-11 Score=118.93 Aligned_cols=183 Identities=8% Similarity=0.063 Sum_probs=126.1
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+++.+ ++++...++++|+.++ ++||++...+... ...... +.+.....+ .. ++.+.| +
T Consensus 39 ~~nlL--ais~~~gll~a~~~~~-l~v~~~~~l~~~~--~~~~~~-----~~~~~~~~l-p~-V~~l~f---d------- 96 (388)
T 1xip_A 39 SLQNL--DISNSKSLFVAASGSK-AVVGELQLLRDHI--TSDSTP-----LTFKWEKEI-PD-VIFVCF---H------- 96 (388)
T ss_dssp CCBCE--EEETTTTEEEEEETTE-EEEEEHHHHHHHH--HSSSCC-----CCCSEEEEC-TT-EEEEEE---E-------
T ss_pred cccEE--EEcCCCCEEEEeCCCE-EEEEEhhHhhhhh--cccccc-----ccceEEeeC-CC-eeEEEE---C-------
Confidence 45444 9999999999999884 6679865433000 000000 000000011 12 566666 2
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+..|+++ .++.|++||+.+....... ..|..++.++.+.+. .+++++.||.|.+||+.++.... +...|+|
T Consensus 97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 7788888 8899999999865543232 356778888887764 38889999999999999887653 3458999
Q ss_pred EEEccCCCEEEEECCeEEEEECCCCee--eEEe------e---cCCCCEEEEEEecCCCEEEEEe
Q 008058 165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~g~i~vwd~~~~~~--~~~~------~---~h~~~v~~l~~~~~~~~l~s~s 218 (579)
++|+|+|..+..++|.+++|+...++. .+++ . +|...|.+|.|.+++.++++-+
T Consensus 168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999933333339999999888775 5566 2 3788899999999998887744
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=5.6e-10 Score=120.25 Aligned_cols=240 Identities=16% Similarity=0.193 Sum_probs=158.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccc-cccc-cccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
++..++.++.|+.|..+|..+|+.+..+... .... .....++ +.. +..+++++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-------------~v~------------~g~v~vg~ 174 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-------------RVV------------NGKVVIGN 174 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-------------EEE------------TTEEEECC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-------------EEE------------CCEEEEEe
Confidence 4567888889999999999999999887642 1000 0000000 000 33455554
Q ss_pred C------CCeEEEEEccCCeEEEEecCCC-C-----------------------------CCEEEEEEccCCCEEEEEeC
Q 008058 94 G------GGDVLALAVSAGQLKWRLSDCH-P-----------------------------GGVSAISFATHGSCIYSAGA 137 (579)
Q Consensus 94 ~------~g~i~iwd~~~~~~~~~~~~~h-~-----------------------------~~V~~l~~~~~~~~l~s~~~ 137 (579)
. +|.|..||..+|+.++++.... . .....++++|++..++.++.
T Consensus 175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~ 254 (689)
T 1yiq_A 175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG 254 (689)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence 3 6889999999999988764211 0 01125788898899999887
Q ss_pred CCc-------------------EEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEE
Q 008058 138 DGM-------------------VCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTF 184 (579)
Q Consensus 138 dg~-------------------v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--g~i~vw 184 (579)
++. |..||..+|+.+..++.. . .++.......+|+ .++.++ |.++++
T Consensus 255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence 764 999999999998887642 1 1222223333565 677776 899999
Q ss_pred ECCCCeeeEEeecCC-C--------------------------------------CEEEEEEecCCCEEEEEecC-----
Q 008058 185 NCSDHKKMQKFSGHP-G--------------------------------------AVRFMTFSDNGKYVLSSAVG----- 220 (579)
Q Consensus 185 d~~~~~~~~~~~~h~-~--------------------------------------~v~~l~~~~~~~~l~s~s~~----- 220 (579)
|.++|+.+....-.. . ....++|+|+...+++....
T Consensus 335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 414 (689)
T 1yiq_A 335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY 414 (689)
T ss_dssp ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence 999999874432110 0 01136888888777765311
Q ss_pred ---------------------------------------CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCccc
Q 008058 221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (579)
Q Consensus 221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (579)
++.|..||+.+++.. .....+....... +.
T Consensus 415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~----- 483 (689)
T 1yiq_A 415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-----WEVPYVTIFNGGT-LS----- 483 (689)
T ss_dssp ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----
T ss_pred eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-----eEccCCCCccCcc-ce-----
Confidence 377999999998743 3333333222222 22
Q ss_pred CCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 262 DAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 262 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+..+++++.||.++.||.++|+.+...+
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 467789999999999999999999987654
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.28 E-value=9.2e-10 Score=110.13 Aligned_cols=237 Identities=13% Similarity=0.120 Sum_probs=157.9
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc-------cccccccccccccccccccCccceEEe
Q 008058 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
+++||||++++.+. .++.|.++|..+++.+.++... ......+.++++
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD--------------- 187 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD--------------- 187 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 49999999888775 3678999999999998887532 112334445544
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc
Q 008058 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~ 150 (579)
+++++++.. ++.|.+.|+.+++.+.++..+. . ....|++ +.+++.+.||.+.+.+..+++
T Consensus 188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 778888874 5789999999999987774322 1 2334443 556777788888888886665
Q ss_pred eeeE----eecCCCCe-eEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeec----------CCCCEEEEEEecCC
Q 008058 151 LLGK----FRASTKGI-SCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG----------HPGAVRFMTFSDNG 211 (579)
Q Consensus 151 ~~~~----~~~~~~~v-~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~----------h~~~v~~l~~~~~~ 211 (579)
.... +.....++ ..+.+.+++..++... +.+.+.|...... +..+.- .......++++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 4422 22112221 2456788888766655 8999999875532 111110 01112236899998
Q ss_pred CEEEEEec---------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEE-cCCeEEEEE
Q 008058 212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (579)
Q Consensus 212 ~~l~s~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~dg~i~iwd 280 (579)
+.++++.. .++.|.++|..+.+.. ..+.-.. ....+.|+ |||+ ++++.. .++.|.++|
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~-~P~gia~s-----pDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGH-EIDSINVS-----QDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCC-CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence 87777642 1357999999998754 2222222 23455666 9999 888888 499999999
Q ss_pred CCCceeeccc
Q 008058 281 GQNIEELRNT 290 (579)
Q Consensus 281 ~~~~~~~~~~ 290 (579)
..+++.++.+
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999988664
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=1.3e-08 Score=99.51 Aligned_cols=218 Identities=14% Similarity=0.099 Sum_probs=135.5
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+|+|++. ++++...++.|..||..+++... +.. .....++.|.+. +.+
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~d---------g~l 103 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISD---------SKQ 103 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEET---------TEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCC---------CeE
Confidence 458999865 44555567899999998776432 221 112345666543 444
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecC--CC-CCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~--~h-~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
++++.+ .|.+||..+++....... +. ...+.+++++|+|+++++... .+.|+.+| +++.. .+....
T Consensus 104 -~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 -LIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp -EEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred -EEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 445544 499999988876422211 11 236899999999987665432 24566666 45443 333233
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECC--CC-e-----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-K-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~-~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
.....++|+|+|+.++.+. +.|.+||+. ++ + .+..+......+..++++++|.+.++.. .++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 4578999999998776554 799999986 55 3 2223333445678899999998776654 578899999
Q ss_pred cCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
.. ++.. ..+..+...+.+++|. .+++..|++++.
T Consensus 258 ~~-g~~~-----~~i~~~~~~~~~~af~----g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 TD-GNHI-----ARYEVPGKQTTCPAFI----GPDASRLLVTSA 291 (326)
T ss_dssp TT-CCEE-----EEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred CC-CCEE-----EEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence 83 3322 2333344445666664 156666655544
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=8.6e-10 Score=118.58 Aligned_cols=241 Identities=17% Similarity=0.223 Sum_probs=161.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccc-cccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
++..++.++.|+.|..+|..+|+.+..+... .........+.+ +. .+..+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p------------~v------------~~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP------------RV------------FKGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC------------EE------------ETTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc------------EE------------ECCEEEEEec
Confidence 4567888889999999999999999888643 110000000000 00 0345666654
Q ss_pred ------CCeEEEEEccCCeEEEEecCCCCC-------------------------------CEEEEEEccCCCEEEEEeC
Q 008058 95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA 137 (579)
Q Consensus 95 ------~g~i~iwd~~~~~~~~~~~~~h~~-------------------------------~V~~l~~~~~~~~l~s~~~ 137 (579)
+|.|+.||..+|+.++++...... ....++++|++..++.+..
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 688999999999998877432111 1135788899999988876
Q ss_pred CC-------------------cEEEEeCCCCceeeEeecCC---------CCeeEEEEccCC---CEEEEEC--CeEEEE
Q 008058 138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF 184 (579)
Q Consensus 138 dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g---~~l~~~~--g~i~vw 184 (579)
++ .|..+|..+|+.+..++... .....+....+| +.++.++ |.++++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 59999999999988876421 122333444477 5777777 899999
Q ss_pred ECCCCeeeEEeecCCC-----------CE------------------------EEEEEecCCCEEEEEec----------
Q 008058 185 NCSDHKKMQKFSGHPG-----------AV------------------------RFMTFSDNGKYVLSSAV---------- 219 (579)
Q Consensus 185 d~~~~~~~~~~~~h~~-----------~v------------------------~~l~~~~~~~~l~s~s~---------- 219 (579)
|.++|+.+..+..... ++ ..++|+|++..+++...
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 9999998876642210 01 15688998888777542
Q ss_pred --------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEE
Q 008058 220 --------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 220 --------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
..+.|..||+.+++.. ....+........ +. .++..+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----~~g~~v 491 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----WSVEHVSPWNGGT-LT-----TAGNVV 491 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----eecCCCCCCcCcc-eE-----eCCCEE
Confidence 0278999999988743 3333332222222 22 466788
Q ss_pred EEEEcCCeEEEEECCCceeecccC
Q 008058 268 LAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 268 ~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
++++.||.+++||..+++.+..+.
T Consensus 492 ~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEECCCCceeeeee
Confidence 889999999999999999987654
No 217
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.21 E-value=8e-12 Score=124.50 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=118.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..+++++.||.|+.||..+|+.+..++. ..+....+.. ++..+++++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~---------------------------~g~~~v~~s~d 58 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV---------------------------EEPAFLPDPND 58 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc---------------------------CCCEEEEeCCC
Confidence 678999999999999999999999988764 2111111111 14456777899
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l 174 (579)
|.|+.||..+|+.++.........+. +..+. ++..+++++.|+.|+.||..+|+.+..+..+. ...++|++..+
T Consensus 59 g~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v 133 (369)
T 2hz6_A 59 GSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLL 133 (369)
T ss_dssp CCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------E
T ss_pred CEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEE
Confidence 99999999999876655321111110 00111 34567888889999999999999888776543 23456677778
Q ss_pred EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 175 ~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
++++ +.|+.||.++++.+.++..+. .....+.++. ..+++++ .|+.+..||..+++.. +........
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~-----W~~~~~~pv 205 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL-----WIQNYASPV 205 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE-----EEEECSSCE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE-----EEecCCCce
Confidence 7776 899999999998776654221 1223333331 3455565 6999999999988743 343333334
Q ss_pred eEeEEecCCcccCCCcEEEE--EEcCCeEEEEECCCce
Q 008058 250 MDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE 285 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~ 285 (579)
+....++ ++|...+. ...++.++.+|..+|+
T Consensus 206 ~~~~~~~-----~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 206 VAFYVWQ-----REGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp EEEEECT-----TSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred EEEEEec-----CCceEeccceeecccceeeeehhcCC
Confidence 4444443 45543210 0113456666666665
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.19 E-value=4.8e-09 Score=103.60 Aligned_cols=232 Identities=11% Similarity=-0.006 Sum_probs=145.3
Q ss_pred EEc--cCCCEEEEEe-CCCcEEEEECCCC----eEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 12 ~fs--~dg~~las~s-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.++ +++++|+..+ .+++|.|+|+.+. +....+....- ....-++ ... .+...+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~-~~~~g~s---------~Ph-~~~~~p--------- 147 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV-KKVSGYS---------RLH-TVHCGP--------- 147 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH-HHHHCEE---------EEE-EEEECS---------
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc-ccccCCC---------ccc-ceeECC---------
Confidence 457 8888777654 5889999999765 55555520000 0000000 000 000011
Q ss_pred CCcEEEEEECC------CeEEEEEccCCeEEEEecCC-CC-CCEEEEEEccCCCEEEEEe-------------------C
Q 008058 85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A 137 (579)
Q Consensus 85 ~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~s~~-------------------~ 137 (579)
++ +++++..+ |.|.++|..+++.+.+...+ .. .--.++.|+|+++.+++.. .
T Consensus 148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 14 45555554 67999999999998877533 22 2245688999999888874 3
Q ss_pred CCcEEEEeCCCCceeeEeecCC--CCeeEEEE--ccCCCEEEEEC--------CeEEEEECCCCee--eEEe--ecC---
Q 008058 138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQKF--SGH--- 198 (579)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--~p~g~~l~~~~--------g~i~vwd~~~~~~--~~~~--~~h--- 198 (579)
+.+|.+||+.+++.+.++.... .....+.| +|+|+++++++ ++|.+|....++. ...+ ...
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 6899999999998888877531 24556666 99999777643 5787766554432 1111 110
Q ss_pred -------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc----------e----eeE
Q 008058 199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA----------V----FMD 251 (579)
Q Consensus 199 -------------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----------~----~~~ 251 (579)
......|.++|||++|.++....+.|.+||+...... +.+......+ . .-.
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~--~lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP--VLTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--EEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEEEEeCCeeccccccccccCCCCCC
Confidence 2346789999999999998877899999998643222 1222222110 0 135
Q ss_pred eEEecCCcccCCCcEEEEEE
Q 008058 252 CRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~~ 271 (579)
.+.++ |||++|+++.
T Consensus 385 ~~~lS-----pDGk~LyVaN 399 (462)
T 2ece_A 385 MLEIS-----RDGRRVYVTN 399 (462)
T ss_dssp CEEEC-----TTSSEEEEEC
T ss_pred EEEEc-----CCCCEEEEEc
Confidence 56666 9999999998
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=1.5e-08 Score=102.07 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=123.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEe----ecCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~----~~~~ 159 (579)
+.++++...++.|+.||+.++....... .. .... ++|+|+++.++++..++ .|..||...+.....+ ....
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 5555555566889999999887754332 22 2233 99999999999988766 7999998766544443 2144
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE----eecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~----~~~h~~~v--~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
..+.+++++|++..|+.+. +.|+.||..++..... ..++...- ..++|+|++..|+.+...++.|+.|+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 5778999999444444455 7899999987753222 22222222 39999996555555555788999998765
Q ss_pred CccccceeEEeeecC--------------ceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCce
Q 008058 232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~ 285 (579)
... . . .... -.....++++ ++|.++++-+ .+++|+.|+..++.
T Consensus 299 ~~~----~-~-~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 299 ECE----W-F-CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CEE----E-E-EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEE----E-E-EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCE
Confidence 311 1 1 1111 1224556676 8999777777 78899999977665
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=6.9e-09 Score=111.75 Aligned_cols=199 Identities=12% Similarity=0.151 Sum_probs=127.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+..+..............+ .... ....+ +..+++++.++
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~~------------~g~v~v~~~dg 131 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCD----AVNR--GVAVW------------KGKVYVGVLDG 131 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCC--CCEEE------------TTEEEEECTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccccccc----CCCC--ccEEE------------CCEEEEEccCC
Confidence 456777888899999999999999988643221110000000 0000 00011 56789999999
Q ss_pred eEEEEEccCCeEEEEecCC-CCCCEEEEEEcc---CCCEEEEEe------CCCcEEEEeCCCCceeeEeecCC-------
Q 008058 97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST------- 159 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~---~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (579)
.|..+|..+|+.+++.... +......+..+| ++ .++.++ .+|.|+.||..+|+.+..+....
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 9999999999998877543 211111111122 44 444443 37899999999999887765211
Q ss_pred ------------------------CCeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEE
Q 008058 160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (579)
Q Consensus 160 ------------------------~~v~~l~~~p~g~~l~~~~--g-------------------~i~vwd~~~~~~~~~ 194 (579)
.....++++|++.+++.+. + .|..||.++|+.+..
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0112578899888888876 3 399999999999887
Q ss_pred eec--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 195 ~~~--h~-------~~v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
++. |. .++.......+|+ .++.++ .+|.++++|..+++..
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL 342 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence 764 22 2222223334564 566655 7999999999998754
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.17 E-value=4.7e-09 Score=105.01 Aligned_cols=274 Identities=13% Similarity=0.001 Sum_probs=166.2
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~ 150 (579)
+..++++... +.|.++|+.+++.+.++..+. .+ .+.++|||++++.+. .++.|.++|..+++
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 5556666653 689999999999998886554 34 899999999988886 36789999999999
Q ss_pred eeeEeecC-------CCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEe
Q 008058 151 LLGKFRAS-------TKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA 218 (579)
Q Consensus 151 ~~~~~~~~-------~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s 218 (579)
.+.++... ......+.++|||++++++. +.|.+.|+.+++.+.++.-.. . ....|++ +.+++.+
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNC 236 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEc
Confidence 98887632 23456789999999998864 689999999999988886422 1 2334443 4445554
Q ss_pred cCCCeEEEEEcCCCccccce-eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee--cccC----
Q 008058 219 VGERYIALWRTDGVKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTK---- 291 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---- 291 (579)
.||.+.+.+...++..... ..+..... .......+. +++..++..+..|.+.+.|....... ....
T Consensus 237 -~dG~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~-----~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 237 -RDGSLARVDFADGETKVTNTEVFHTEDE-LLINHPAFS-----LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp -TTSSEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEEC-----TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred -CCCCEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeec-----CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence 6888888887444322000 00111111 111122344 78888888888899999998654321 1000
Q ss_pred -C--c-eEEee-ecccCcccccccchhhhhccccc---eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-
Q 008058 292 -A--T-KILSS-SEDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV- 362 (579)
Q Consensus 292 -~--~-~~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~- 362 (579)
. . ..... ....++++++ .++.+..++ .-+...+.+.+.+- .......++.... ....++|+|||+
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~----rlyVa~~~~~~gthk~~s~~VsVID~-~T~kvv~~I~vg~-~P~gia~spDg~~ 383 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSD----RIYLLVDQRDEWKHKAASRFVVVLNA-ETGERINKIELGH-EIDSINVSQDAEP 383 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGT----EEEEEEEECCTTCTTSCEEEEEEEET-TTCCEEEEEEEEE-EECEEEECCSSSC
T ss_pred cccccccccCCceeeEEcCCCC----EEEEEecccccccccCCCCEEEEEEC-CCCeEEEEEECCC-CcCeEEEccCCCE
Confidence 0 0 00000 0001233333 333332211 00001234555553 2334444444332 478899999999
Q ss_pred eeecccc-ceecccceeee
Q 008058 363 LLPMSQS-LLKSKRGRYVQ 380 (579)
Q Consensus 363 ~l~~s~s-~d~~~~~w~~~ 380 (579)
++ ++.. .++++.+.|..
T Consensus 384 ~l-yv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 384 LL-YALSAGTQTLHIYDAA 401 (426)
T ss_dssp EE-EEEETTTTEEEEEETT
T ss_pred EE-EEEcCCCCeEEEEECC
Confidence 77 4444 58888888874
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=8.4e-10 Score=108.79 Aligned_cols=239 Identities=8% Similarity=0.070 Sum_probs=141.3
Q ss_pred EEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 10 LTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++++|+|+.+++... ++.++||.+.+++. ..+..... . ..++.. ....+.+.+. +.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~---------~-~~~~~~-~p~gv~~d~~---------g~ 79 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG---------N-AIITFD-TVLGIKSDGN---------GI 79 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS---------S-CCCCCS-CEEEEEECSS---------SE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc---------C-ccccee-EeeEEEEcCC---------Cc
Confidence 4589999999888642 34355665545543 22321110 0 001111 2233444332 44
Q ss_pred EEEEEEC-----CCeEEEEEccCCeEEEEecC-----CCCCCEEEEEEccCCCEEEEE-e---CCCcEEEEeCCCCceee
Q 008058 88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIYSA-G---ADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 88 ~l~~~~~-----~g~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~-~---~dg~v~iwd~~~~~~~~ 153 (579)
++++-+. ++.|.+||+.+++.+..+.. .+...+.++++++++..++.+ . .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 4444333 47899999999986655421 123457899999865555444 4 57899999998887666
Q ss_pred EeecCC-----------------------------CCeeEEEEccCCCEEEEEC---CeEEEEECC---CC-----eeeE
Q 008058 154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DH-----KKMQ 193 (579)
Q Consensus 154 ~~~~~~-----------------------------~~v~~l~~~p~g~~l~~~~---g~i~vwd~~---~~-----~~~~ 193 (579)
.+..|. ..+..|+|+|+|+.|+.+. +.++.++.. .+ +...
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 553321 2368899999999888776 466665532 11 0000
Q ss_pred --EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058 194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 194 --~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 271 (579)
...++.+....++++++|..+++.. .++.|.+||..+++.. .+.... .......+++. ++|.++++.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~ 309 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN 309 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence 1223445567899999998777765 6899999998444321 122211 13345667776 7777777766
Q ss_pred cCCeEEEE
Q 008058 272 ETGVCYIW 279 (579)
Q Consensus 272 ~dg~i~iw 279 (579)
..+.+.+|
T Consensus 310 ~~~~~~~f 317 (343)
T 2qe8_A 310 QLHHSAPL 317 (343)
T ss_dssp CGGGSGGG
T ss_pred cccccccc
Confidence 55444444
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=3.5e-08 Score=98.44 Aligned_cols=234 Identities=9% Similarity=0.019 Sum_probs=144.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..++.++.++.|..+|..+|+.+..+........ .. ..... +...+.. .+..+++++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~-----~~~~~---~~~~~~~-------~~~~v~v~~~~ 112 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FS-----KEPAL---LSGGVTV-------SGGHVYIGSEK 112 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CS-----CCCCC---EEEEEEE-------ETTEEEEEETT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----cc-----ccCcc---cccCceE-------eCCEEEEEcCC
Confidence 456788888899999999999998877653221100 00 00000 0000000 15678899999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~ 170 (579)
+.|..+|..+|+..++.... ......... .+..++.++.++.|+.+|..+|+.+..+....... ...... +
T Consensus 113 g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVA-GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEECS-SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred CEEEEEECCCCCEEEEEeCC-CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence 99999999999988776432 111111122 24578888899999999999999887766432211 222222 3
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeecCCCC----------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+ .++.+. +.+..+|..+++.+......... + ..... .+..++.++ .++.+..+|..+++..
T Consensus 189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence 4 455554 89999999999887766532110 1 11111 134566665 6899999999988643
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
....... ..... .++..|++++.+|.+..+|..+++.+...
T Consensus 263 ---w~~~~~~--~~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 263 ---WKRELGS--VNDFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ---EEECCCC--EEEEE-------EETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ---eeccCCC--CCCce-------EECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 2222221 11222 24567888889999999999999876543
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.11 E-value=2.5e-09 Score=105.53 Aligned_cols=164 Identities=12% Similarity=0.119 Sum_probs=114.3
Q ss_pred CcEEEEEECCCeEEEEEccCCe---------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
..++++|+.+ .+.+|++...+ ........+.. |+.++| |+++|+++ .++.|++||+.+........
T Consensus 49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~ 123 (388)
T 1xip_A 49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT 123 (388)
T ss_dssp TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE
T ss_pred CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc
Confidence 5677777776 55569976433 11101123556 999999 89999998 88999999998877666677
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.+...+.++.+.+.. +++... |.|.+||+.+++... +...|++++|+|+| ++.+. .||++++|+.......
T Consensus 124 ~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 124 SFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KDRSFQSFAWRNGEME 195 (388)
T ss_dssp ECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TTSCEEEEEEETTEEE
T ss_pred eeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cCCcEEEEcCCCcccc
Confidence 777888888877653 333334 999999999887643 44689999999999 45565 6999999988776521
Q ss_pred cceeEEee------e---cCceeeEeEEecCCcccCCCcEEEEE
Q 008058 236 SASCVLAM------E---HPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 236 ~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (579)
. ...+ . .+...+..+.|. +++.++++=
T Consensus 196 ~---k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y 231 (388)
T 1xip_A 196 K---QFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVF 231 (388)
T ss_dssp E---EEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEE
T ss_pred c---cceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEE
Confidence 0 1122 1 133555566665 677877753
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=6.6e-09 Score=100.50 Aligned_cols=218 Identities=15% Similarity=0.120 Sum_probs=133.0
Q ss_pred EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+|+|+|+ ++++...++.|..|+. ++.. ..+..+...+ ..+.|.+. ++++
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~------------------~gl~~d~d---------G~l~ 100 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFT------------------NGNAVDAQ---------QRLV 100 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCE------------------EEEEECTT---------SCEE
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCcc------------------ceeeECCC---------CCEE
Confidence 48999998 4555566889999998 4543 3333222212 23333321 5544
Q ss_pred EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCC
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPLTG 149 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s----~~~-------------dg~v~iwd~~~~ 149 (579)
+....++.|.+|+.. ++...... .+ ....+.++++.|+|+..++ |.. .+.|+.||..++
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 444455789999986 55321111 11 1234678999999997775 321 256888888777
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCee--eEEe-ecCCCCEEEEEEecCCCEEEEEe
Q 008058 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~--~~~~-~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
+..... .......++|+|||+.|+.+. +.|++|++..+.. ...+ ....+....++++++|++.++ +
T Consensus 180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~ 256 (305)
T 3dr2_A 180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-S 256 (305)
T ss_dssp CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-C
T ss_pred cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-c
Confidence 654433 334678899999999777654 3799999876541 1112 112344567899999985443 3
Q ss_pred cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
.+ .|.+|+... +.. ..+..+. ....++|. ++++.|..++.++.
T Consensus 257 -~~-gv~~~~~~g-~~~-----~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~l 299 (305)
T 3dr2_A 257 -GT-GVCVFDSDG-QLL-----GHIPTPG-TASNCTFD-----QAQQRLFITGGPCL 299 (305)
T ss_dssp -SS-EEEEECTTS-CEE-----EEEECSS-CCCEEEEC-----TTSCEEEEEETTEE
T ss_pred -CC-cEEEECCCC-CEE-----EEEECCC-ceeEEEEe-----CCCCEEEEEcCCeE
Confidence 34 499999843 322 2233333 35566776 78888888877543
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=1.7e-08 Score=103.37 Aligned_cols=240 Identities=9% Similarity=0.019 Sum_probs=156.3
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccc-cccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 15 ~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
+||+++..... +++|.+.|+.+.++...++-..+ ....+.+ ... | ++.+++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~------------------~~~-p------~~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRP------------------QKW-P------RSNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEE------------------CCS-S------BCSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceee------------------eec-C------CCcEEEEe
Confidence 48888887765 56799999999998885542211 1111111 110 1 15556655
Q ss_pred E------------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---------------
Q 008058 93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------------- 139 (579)
Q Consensus 93 ~------------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--------------- 139 (579)
+ .++.+.++|..+.+..+++.-+- ....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 3 23469999999999988876432 346778999999988887553
Q ss_pred -----------------------cEEEEeCCC--Cce-eeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe
Q 008058 140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK 190 (579)
Q Consensus 140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~ 190 (579)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ ++|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 477888877 544 455543 23567899999999999988 799999998653
Q ss_pred ------------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc------cccceeEEeeecCceeeEe
Q 008058 191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK------KQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 191 ------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~ 252 (579)
.+.+.. -......++|+|+| ++.++..-|++|.+||+.... .. ...+..+.-+-..-..
T Consensus 311 ~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yqpGh~ 387 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQPGHL 387 (595)
T ss_dssp HHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSCEEEE
T ss_pred cccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccccccc
Confidence 233333 23457889999999 777776789999999987621 10 1133344333222111
Q ss_pred EEecCCcccCCCcEEEEEEc-C-CeE-----------EEEECCCce
Q 008058 253 RCIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE 285 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~~~-d-g~i-----------~iwd~~~~~ 285 (579)
.+.....++|||++|++... . .++ .++|+..++
T Consensus 388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 21112234599999999875 1 233 889986543
No 227
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.10 E-value=1.6e-08 Score=93.95 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=133.5
Q ss_pred EEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++|+|||..+++.+. ++.|+++|..+++.+..+...... | . ..+.+. ++.+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-----f---------g---eGi~~~----------g~~l 78 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-----F---------G---EGLTLL----------NEKL 78 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-----C---------E---EEEEEE----------TTEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-----c---------e---EEEEEe----------CCEE
Confidence 389998754444443 579999999999998876521100 0 0 011111 0334
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS 163 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~ 163 (579)
.++.-.++.+.++|..+.+.+.++..+ ... ...+++||+.++.+..++.|.++|..+.+.+..+.... ..++
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 444445788999999999998877544 111 23355688888888788999999999998888766322 1467
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd 228 (579)
.+.|. +|..++... +.|.+.|..+++.+..+.-. ....+.|+|+|+++.+++++...+.+.+.+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 776555553 89999999999998888521 135689999999987777776778888888
Q ss_pred cCCC
Q 008058 229 TDGV 232 (579)
Q Consensus 229 ~~~~ 232 (579)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7654
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=2.3e-11 Score=121.09 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=103.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-Cee-
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS- 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~- 163 (579)
+..+++++.+|.|+.||..+|+.++++.. +.+.+..+.+++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 77899999999999999999999988743 4555555666787888888999999999999988766653321 110
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+..+. ++..+++++ +.|+.||.++|+.+.++..+. ...++|++..+++++ .|+.|+.||..+++.. .
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~-----W 154 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELR-----W 154 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCC-----C
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEE-----E
Confidence 11111 234455554 899999999999887776553 234567777888877 6899999999988754 1
Q ss_pred eeecCceeeEeEEecCCcccCCC---cEEEEEEcCCeEEEEECCCceeeccc
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
...... .....+. ++. ..+++++.||.++.||..+++.+...
T Consensus 155 ~~~~~~--~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 155 NATYFD--YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEEEE--ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred eEeccc--ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 111111 1111111 221 45777899999999999999876544
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.07 E-value=3.1e-08 Score=98.89 Aligned_cols=224 Identities=16% Similarity=0.137 Sum_probs=144.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..++.++.++.|..+|..+|+....+...... .+.+ +. .+..+++++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~p------------~~------------~~~~v~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-----LSRP------------VV------------SDGLVLIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-----CSCC------------EE------------ETTEEEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-----EcCC------------EE------------ECCEEEEEcCC
Confidence 4567888888999999999999988776532211 0000 00 04578889999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCE------EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-------- 161 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V------~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-------- 161 (579)
+.|..+|..+|+.+++.... .++ ..... .+..++.++.++.+..+|..+|+.+..+......
T Consensus 153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--C-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 99999999999988776432 111 11122 2456888888999999999999988776532110
Q ss_pred --e-eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 162 --I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 --v-~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
+ ....+ .++.+++.+. +.+..+|.++++.+.... ......+... +..++.++ .++.+..+|..+++..
T Consensus 229 ~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~--~~~l~~~~-~~g~l~~~d~~tG~~~-- 300 (376)
T 3q7m_A 229 SDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVD--GNRIYLVD-QNDRVMALTIDGGVTL-- 300 (376)
T ss_dssp -CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEE--TTEEEEEE-TTCCEEEEETTTCCEE--
T ss_pred cccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEE--CCEEEEEc-CCCeEEEEECCCCcEE--
Confidence 1 11111 1344444333 899999999998876654 2334444443 44666666 6889999999988743
Q ss_pred eeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 238 SCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.... ........... .+..|++++.+|.++.||..+++.+...
T Consensus 301 ---w~~~~~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 301 ---WTQSDLLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ---EEECTTTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ---EeecccCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 2222 11111111122 3467888999999999999999876543
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.07 E-value=6.1e-08 Score=104.19 Aligned_cols=199 Identities=11% Similarity=0.103 Sum_probs=128.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+..+.............. .... ..... .+..+++++.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~---~~~a~-----------~~~~v~v~~~dg 138 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC----DVVN---RGVAL-----------WKGKVYVGAWDG 138 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS----CSCC---CCCEE-----------ETTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc----cCCC---CCceE-----------ECCEEEEEcCCC
Confidence 44677777789999999999999988864332111000000 0000 00000 156789999999
Q ss_pred eEEEEEccCCeEEEEecCC-CC---CCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC-----
Q 008058 97 DVLALAVSAGQLKWRLSDC-HP---GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG----- 161 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~-h~---~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~----- 161 (579)
.|..+|..+|+.++++... .. ..+.+--.- .+..++.++. +|.|+.||..+|+.+..+......
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 9999999999998887532 10 112111011 2345555543 799999999999998877643211
Q ss_pred ---------------------------eeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeE
Q 008058 162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ 193 (579)
Q Consensus 162 ---------------------------v~~l~~~p~g~~l~~~~--g-------------------~i~vwd~~~~~~~~ 193 (579)
...++++|++..++.+. + .|..+|.++|+.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 13578899888888776 2 49999999999887
Q ss_pred Eeec--CC-------CCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccc
Q 008058 194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 194 ~~~~--h~-------~~v~~l~~~~~~---~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.++. |. ....-+....+| ..++.++ .+|.++++|..+++..
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence 7753 21 122233444577 5666665 7999999999998754
No 231
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=3.9e-08 Score=105.57 Aligned_cols=241 Identities=19% Similarity=0.230 Sum_probs=155.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC-
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (579)
++..++.++.|+.|..+|..+|+.+..+............+.+ +.. +..+++++.
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v~------------~~~v~vg~~~ 171 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP------------RVV------------KGKVIIGNGG 171 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC------------EEE------------TTEEEECCBC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC------------EEE------------CCEEEEeCCC
Confidence 3557888888999999999999999887642211000000000 000 344566554
Q ss_pred -----CCeEEEEEccCCeEEEEecCC--CC----------------------------CCEEEEEEccCCCEEEEEeCCC
Q 008058 95 -----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG 139 (579)
Q Consensus 95 -----~g~i~iwd~~~~~~~~~~~~~--h~----------------------------~~V~~l~~~~~~~~l~s~~~dg 139 (579)
+|.|..+|..+|+.++++... .. .....+++.|++..++.++.++
T Consensus 172 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g 251 (668)
T 1kv9_A 172 AEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNG 251 (668)
T ss_dssp TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCC
Confidence 488999999999998877421 10 0112468888888888887776
Q ss_pred -------------------cEEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEEEC
Q 008058 140 -------------------MVCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTFNC 186 (579)
Q Consensus 140 -------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--g~i~vwd~ 186 (579)
.|..+|..+|+.+..++.. . .++....+..+|+ .++.++ |.++++|.
T Consensus 252 ~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~ 331 (668)
T 1kv9_A 252 SPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDR 331 (668)
T ss_dssp ESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred CccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEEC
Confidence 3999999999998887642 1 2233333344675 566666 89999999
Q ss_pred CCCeeeEEeecCCC------------C------------------------EEEEEEecCCCEEEEEe------------
Q 008058 187 SDHKKMQKFSGHPG------------A------------------------VRFMTFSDNGKYVLSSA------------ 218 (579)
Q Consensus 187 ~~~~~~~~~~~h~~------------~------------------------v~~l~~~~~~~~l~s~s------------ 218 (579)
.+|+.+...+.... + -..++++|+...++...
T Consensus 332 ~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~ 411 (668)
T 1kv9_A 332 TNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGK 411 (668)
T ss_dssp TTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGG
T ss_pred CCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecc
Confidence 99998754432110 0 01267788766655421
Q ss_pred -----------------------cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058 219 -----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 219 -----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 275 (579)
..++.|..||+.+++.. ............... ..+.++++++.||.
T Consensus 412 ~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~vf~g~~dg~ 480 (668)
T 1kv9_A 412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGGTLS------TAGNLVFQGTAAGQ 480 (668)
T ss_dssp GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCCEEE------ETTTEEEEECTTSE
T ss_pred ccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE-----EEccCCCCCcCceeE------eCCCEEEEECCccc
Confidence 12478999999988743 333332222221211 35678888999999
Q ss_pred EEEEECCCceeecccC
Q 008058 276 CYIWYGQNIEELRNTK 291 (579)
Q Consensus 276 i~iwd~~~~~~~~~~~ 291 (579)
++.||.++++.+...+
T Consensus 481 l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 481 MHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred chhhhhhcChhheEec
Confidence 9999999999886554
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=1.7e-07 Score=95.96 Aligned_cols=189 Identities=8% Similarity=0.048 Sum_probs=133.1
Q ss_pred CcEEEEEECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEE-c-cCCCEEEEEe------------------CCCcEEEE
Q 008058 86 SSLLVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------ADGMVCEI 144 (579)
Q Consensus 86 ~~~l~~~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~-~-~~~~~l~s~~------------------~dg~v~iw 144 (579)
+++++++..++ .|.+.|+.+.++...+.-.......++++ + |+++++++++ .++.+.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 67777777654 59999999999876332233456889998 5 9999998884 34579999
Q ss_pred eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------------------------------------eEEEE
Q 008058 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------------------------------------QLKTF 184 (579)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g---------------------------------------~i~vw 184 (579)
|..+.+...++.... ....++++|+|+++++++ + .|.|.
T Consensus 181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 999998888877533 457788999999988776 2 26667
Q ss_pred ECCC--Cee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccc-eeEEeeecCceeeEeEE
Q 008058 185 NCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSA-SCVLAMEHPAVFMDCRC 254 (579)
Q Consensus 185 d~~~--~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~------~~~-~~~~~~~~~~~~~~~~~ 254 (579)
|.++ ++. +..++.. ....++.++|||+++++++..+.+|.++|+.+.+. ... .......- +.-..-..
T Consensus 260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~a 337 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTA 337 (595)
T ss_dssp ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEE
T ss_pred eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEE
Confidence 7766 444 4455432 24567999999999999988889999999986531 000 11222222 22234556
Q ss_pred ecCCcccCCCcEEEEE-EcCCeEEEEECCC
Q 008058 255 IDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (579)
Q Consensus 255 ~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 283 (579)
|+ |+| ++.+. -.|++|.+||+++
T Consensus 338 F~-----~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 338 FD-----GRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EC-----TTS-EEEEEETTTTEEEEEEHHH
T ss_pred EC-----CCC-eEEEEEecCCcEEEEEhhH
Confidence 76 899 55554 4599999999877
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.97 E-value=7.5e-08 Score=93.00 Aligned_cols=186 Identities=13% Similarity=0.055 Sum_probs=118.9
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v 162 (579)
.++++...++.|..|+. +++.. .+ ..+...+.+++++++|+.+++...++.|..||.. ++........ ...+
T Consensus 58 ~l~~~d~~~~~i~~~~~-~g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWRE-DGTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP 133 (305)
T ss_dssp EEEEEETTTTEEEEEET-TSCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred EEEEEECCCCEEEEEeC-CCCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence 36777778889999998 45432 22 2355678999999999966665566889999975 5533222111 1346
Q ss_pred eEEEEccCCCEEEE----EC---------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC---
Q 008058 163 SCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--- 220 (579)
Q Consensus 163 ~~l~~~p~g~~l~~----~~---------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--- 220 (579)
+.++++|+|++.++ |. +.|+.||..+++..... .......++|+|+++.|+.+...
T Consensus 134 ~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 78999999998886 21 46788887666544332 34557889999999987776533
Q ss_pred --CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 221 --ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 221 --d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
++.|.+|++...... ....+. .........+.++ ++|++ .+++.+ .|.+|+.+ ++.+.
T Consensus 212 ~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~l-wv~~~~-gv~~~~~~-g~~~~ 271 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWL-WSSSGT-GVCVFDSD-GQLLG 271 (305)
T ss_dssp -CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCE-EECCSS-EEEEECTT-SCEEE
T ss_pred CCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCE-EEecCC-cEEEECCC-CCEEE
Confidence 268999998765311 111111 1112223445565 78884 444444 59999974 44443
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=3e-08 Score=97.51 Aligned_cols=221 Identities=10% Similarity=-0.044 Sum_probs=135.3
Q ss_pred cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE----------CCCe
Q 008058 28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT----------GGGD 97 (579)
Q Consensus 28 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~----------~~g~ 97 (579)
+|.++|..+++.+.++.....+ .+.++++ +..++++. .++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spD---------------------------g~~lyVan~~~~r~~~G~~~~~ 97 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHS---------------------------GSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTT---------------------------SSCEEEEEEEETTTTSSSEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCC---------------------------CCEEEEEcccccccccCCCCCE
Confidence 7889999999999988754443 4555555 66677776 3677
Q ss_pred EEEEEccCCeEEEEecCC--C----CCCEEEEEEccCCCEEEEEeC--CCcEEE--EeCCCCceeeEeecCC--------
Q 008058 98 VLALAVSAGQLKWRLSDC--H----PGGVSAISFATHGSCIYSAGA--DGMVCE--IDPLTGSLLGKFRAST-------- 159 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~--h----~~~V~~l~~~~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~-------- 159 (579)
|.+||+.+++.+.++.-+ . ......+.|+|||++++.+.. +..|.+ +|+.+ +..+....
T Consensus 98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g 174 (368)
T 1mda_H 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGA 174 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEE
T ss_pred EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCC
Confidence 999999999998777422 0 123568999999999998874 457888 89865 23332100
Q ss_pred ----------CCeeEEEE--------------------------ccCCCEEEEEC-CeEEEEECCCCe--eeEEeec---
Q 008058 160 ----------KGISCMAV--------------------------SSDGKMLATAA-GQLKTFNCSDHK--KMQKFSG--- 197 (579)
Q Consensus 160 ----------~~v~~l~~--------------------------~p~g~~l~~~~-g~i~vwd~~~~~--~~~~~~~--- 197 (579)
+.+..+.. .+++..++..+ +.+.+.|..+.. .+..+.-
T Consensus 175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~ 254 (368)
T 1mda_H 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCT
T ss_pred CeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccc
Confidence 00001110 12222222221 456666664321 2222210
Q ss_pred ----CC---CCEEEEEEecCCCEEEEEec---C-----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC
Q 008058 198 ----HP---GAVRFMTFSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (579)
Q Consensus 198 ----h~---~~v~~l~~~~~~~~l~s~s~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
+. .....+.|+|+++.++.+.. . ++.+.++|+.+.+.. ..+.-.. ....+.++ |
T Consensus 255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-----~~i~vg~-~p~gi~~s-----~ 323 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-----GPISNGH-DSDAIIAA-----Q 323 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-----ECCEEEE-EECEEEEC-----C
T ss_pred cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE-----EEEECCC-CcceEEEC-----C
Confidence 00 11112689999998887642 1 235669999998744 2222221 24556676 8
Q ss_pred CCcE-EEEEE-cCCeEEEEECCCceeecccC
Q 008058 263 AGLY-VLAIS-ETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 263 ~~~~-l~s~~-~dg~i~iwd~~~~~~~~~~~ 291 (579)
||++ +++.. .++.|.++|+.+++.+..++
T Consensus 324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 324 DGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9985 55555 49999999999999887665
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=7.2e-08 Score=95.31 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=131.5
Q ss_pred CcEEEEEECCCeEEEEEccCC----eEEEEec------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~----~~~~~~~------~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~ 149 (579)
..+++.+..++.|+++|+.+. +....+. +.-...-..+...|+| .++++..+ |.|.++|..++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 345556667788999999765 5554441 0011245677888999 77776655 78999999999
Q ss_pred ceeeEeecCCC---CeeEEEEccCCCEEEEE---------------------CCeEEEEECCCCeeeEEeecC-C-CCEE
Q 008058 150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR 203 (579)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~~~---------------------~g~i~vwd~~~~~~~~~~~~h-~-~~v~ 203 (579)
+.+.++..... .-+.+-|+|+++.+++. +++|.+||+.+++.+.++.-. . ....
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 99999874322 23457889999999988 379999999999888887642 1 2345
Q ss_pred EEEE--ecCCCEEEEEec-----CCCeEEEEEcCCCccccceeEEeeecC----------------ceeeEeEEecCCcc
Q 008058 204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV 260 (579)
Q Consensus 204 ~l~~--~~~~~~l~s~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 260 (579)
.+.| +|++++++.++. .+++|.+|....++.. ...+..+... ......+.++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---- 329 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS---- 329 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence 6666 999999888875 6778888877654321 1111111100 1223445565
Q ss_pred cCCCcEEEEEEc-CCeEEEEECCC
Q 008058 261 DDAGLYVLAISE-TGVCYIWYGQN 283 (579)
Q Consensus 261 ~~~~~~l~s~~~-dg~i~iwd~~~ 283 (579)
+||++|.++.. .+.|.+||+..
T Consensus 330 -~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 330 -LDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp -TTSCEEEEEETTTTEEEEEECSS
T ss_pred -CCCCEEEEEeCCCCEEEEEEecC
Confidence 99999998877 78999999863
No 236
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.92 E-value=2.9e-07 Score=96.74 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=152.3
Q ss_pred EEccCCCE----EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fs~dg~~----las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+++|.+.. ++.++.|+.|.-+|..+|+.+...............+.+ +.. +.
T Consensus 112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP------------~v~------------~g 167 (599)
T 1w6s_A 112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YVV------------KD 167 (599)
T ss_dssp EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TT
T ss_pred EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC------------EEE------------CC
Confidence 55554444 888888999999999999998876532210000001111 000 34
Q ss_pred EEEEEEC------CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEE
Q 008058 88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS 124 (579)
Q Consensus 88 ~l~~~~~------~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~ 124 (579)
.+++++. +|.|+.+|..+|+.++++...... .+ ..++
T Consensus 168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a 247 (599)
T 1w6s_A 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (599)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence 4566653 789999999999998876432211 01 1345
Q ss_pred EccCCCEEEEEeCC----------------CcEEEEeCCCCceeeEeecCCC---------CeeEEEEc-cCC---CEEE
Q 008058 125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDG---KMLA 175 (579)
Q Consensus 125 ~~~~~~~l~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~-p~g---~~l~ 175 (579)
+.++...++.+..+ +.|..+|..+|+.+..++.... ...-+... .+| +.++
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~ 327 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT 327 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence 66777788877665 3799999999999888765321 11112222 567 4666
Q ss_pred EEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEE
Q 008058 176 TAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYV 214 (579)
Q Consensus 176 ~~~--g~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~~~~~~~l 214 (579)
.++ |.++++|.++|+.+....-.. .++ ..++++|+...+
T Consensus 328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~ 407 (599)
T 1w6s_A 328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF 407 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence 666 899999999999876654211 111 245677776665
Q ss_pred EEEec--------------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEec
Q 008058 215 LSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256 (579)
Q Consensus 215 ~s~s~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (579)
++... .++.+..||+.+++.. ...............
T Consensus 408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~~~- 481 (599)
T 1w6s_A 408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGTMA- 481 (599)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE-
T ss_pred EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-----eEecCCCCccCcceE-
Confidence 54320 2467888888887643 332222111111111
Q ss_pred CCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 257 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+..++.++.||.++.||.++|+.+...+
T Consensus 482 -----tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 -----TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp -----ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 256777789999999999999999887653
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.92 E-value=5.4e-08 Score=95.68 Aligned_cols=165 Identities=8% Similarity=-0.113 Sum_probs=109.5
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCceeeEeecC-------C
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS-------T 159 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-------~ 159 (579)
.|.++|..+++.+.++..+.. + .+.|+|||++++.+. .++.|.+||+.+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999999999988876654 4 799999999999886 3688999999999999998654 1
Q ss_pred CCeeEEEEccCCCEEEEEC----CeEEE--EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC--
Q 008058 160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG-- 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~----g~i~v--wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~-- 231 (579)
.....++++|||++++++. +.+.+ +|..+ +.++.-- +. ..+.|+++..+.+.+.|+.+.+.++..
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 2457899999999999874 57888 88876 4444321 11 123355443333333688888888876
Q ss_pred ---Cccccce-eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 232 ---VKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 232 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
++..... ........ .. .+ +++..++..+. +.+.+.|..+
T Consensus 197 ~~~~~v~~~~t~~i~vg~~--P~---~~------~~~~~~~~vs~-~~V~viD~~~ 240 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQ--AA---QA------NYPGMLVWAVA-SSILQGDIPA 240 (368)
T ss_dssp CCCEECCCCSCTTSCBCSC--CE---EE------TTTTEEEECBS-SCCEEEECCS
T ss_pred ccCCeEEEEeeeeeeCCCC--cc---cc------ccCCEEEEEcC-CEEEEEECCC
Confidence 3211000 00111111 11 13 45566666666 8888888754
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.92 E-value=3e-07 Score=96.67 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=151.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC-
Q 008058 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (579)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (579)
++..++.++.|+.|..+|..+|+.+..+............+.+ +.. +..+++++.
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v~------------~g~v~vg~~~ 169 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FVA------------KDTVLMGCSG 169 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEEECBC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC------------EEE------------CCEEEEEecC
Confidence 3557788888999999999999998876532210000000000 000 345666665
Q ss_pred -----CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEEEccCCCEE
Q 008058 95 -----GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAISFATHGSCI 132 (579)
Q Consensus 95 -----~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~~~~~~~~l 132 (579)
+|.|..+|..+|+.++++...... .+ ..+++.++...+
T Consensus 170 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v 249 (571)
T 2ad6_A 170 AELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF 249 (571)
T ss_dssp GGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE
T ss_pred CccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE
Confidence 789999999999998876432110 00 135667766777
Q ss_pred EEEeCC----------------CcEEEEeCCCCceeeEeecCC---------CCeeEEEEccCCC---EEEEEC--CeEE
Q 008058 133 YSAGAD----------------GMVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLK 182 (579)
Q Consensus 133 ~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g~---~l~~~~--g~i~ 182 (579)
+.+..+ +.|..+|..+|+.+..++... ....-+...++|+ .++.++ |.++
T Consensus 250 y~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~ 329 (571)
T 2ad6_A 250 YYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILY 329 (571)
T ss_dssp EEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEE
T ss_pred EEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEE
Confidence 776542 359999999999988776421 1111123334774 566666 8999
Q ss_pred EEECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEEEEEec----
Q 008058 183 TFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV---- 219 (579)
Q Consensus 183 vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~~~~~~~l~s~s~---- 219 (579)
++|..+++.+..+.-.. .++ ..++++|+...+++.+.
T Consensus 330 ~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 409 (571)
T 2ad6_A 330 TLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICM 409 (571)
T ss_dssp EEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEE
T ss_pred EEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccc
Confidence 99999999877654221 111 23578888777766541
Q ss_pred --------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEE
Q 008058 220 --------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 220 --------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
.++.|..||..+++.. ............... ..+..+
T Consensus 410 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~v 478 (571)
T 2ad6_A 410 DWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLV 478 (571)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEE
T ss_pred cccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-----EEecCCCCccceeEE------ECCCEE
Confidence 2478999999888743 333322222211111 245677
Q ss_pred EEEEcCCeEEEEECCCceeecccC
Q 008058 268 LAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 268 ~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
++++.||.++.||.++++.+...+
T Consensus 479 ~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 479 WYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCeEEEEECCCCCEEEEEe
Confidence 779999999999999999886554
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=8.4e-08 Score=103.90 Aligned_cols=186 Identities=12% Similarity=0.031 Sum_probs=121.3
Q ss_pred CcEEEEEE-CC----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008058 86 SSLLVLGT-GG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~-~~----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~-------------v~iwd~~ 147 (579)
++.++.+. .. ..|++||+.+++.+.....+ ....+++|+ ||+.|+.++.+.. |++|++.
T Consensus 140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg 216 (693)
T 3iuj_A 140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG 216 (693)
T ss_dssp SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence 66666544 23 35999999999865432211 112567899 9999998887743 9999998
Q ss_pred CCce--eeEee--c-CCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEE
Q 008058 148 TGSL--LGKFR--A-STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 148 ~~~~--~~~~~--~-~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~ 215 (579)
++.. ...+. . +...+.++.|+|||++|+... +.|+++|+.++. ....+..+....... |+++|..|+
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY 295 (693)
T ss_dssp SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence 7643 22232 2 344578899999999886543 489999998763 455666666666555 667666666
Q ss_pred EEecCC---CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CC--eEEEEECCCce
Q 008058 216 SSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIE 285 (579)
Q Consensus 216 s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~ 285 (579)
..+..+ +.|..|++.++....... ...+....+ .++ +++.+|+.... +| .|++|+++.+.
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~---~~s-----~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQVL---TVH-----SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCE---EEE-----EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCEE---EEE-----EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 555333 579999998765421111 123333333 555 77887777665 44 78999987553
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=1.9e-07 Score=85.67 Aligned_cols=173 Identities=8% Similarity=0.067 Sum_probs=119.8
Q ss_pred EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|+ ++.++.+.+.+| .|+++|.++|+.+..+..... .|. .. +.. . +..|
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~Fg---------eG---it~--~---------g~~l 99 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YFG---------EG---ISD--W---------KDKI 99 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CCE---------EE---EEE--E---------TTEE
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----cce---------eE---EEE--e---------CCEE
Confidence 677 666666666665 899999999999887753211 000 00 010 0 3334
Q ss_pred EEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008058 90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS 163 (579)
Q Consensus 90 ~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~ 163 (579)
+..+ .++.+.+||..+.+.+.++..+..+ +.+ ++|++.|+.+..++.|.++|..+.+.+.++.... ..++
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSCC--CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCCCc--eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 4444 5788999999999998777543211 333 3578888877778889999999999888866421 2345
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEe
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~l~s~s 218 (579)
.+.|. +|++.+..- +.|.+.|.++++.+..+.-. ..-.+.|+|+|+++.|+.+|
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 67876 776665553 89999999999998887532 13468999999988887776
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=2e-07 Score=90.83 Aligned_cols=249 Identities=16% Similarity=0.181 Sum_probs=157.2
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccc--cCccceEEeeeccccccccc-----
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL--SVDYTCMKWLSVDRKKKRKL----- 84 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~----- 84 (579)
.++.+|. +..++.++.|..|| .+++....+......+..+....+ +.. .... ..++.+ +.+.....
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~---g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKD---GTIYFGSDK-VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTT---TEECCSSCE-EEEECC-CGGGGGGSCC---
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecC---CcEEEecCc-EEEECC-CCcEEEEEECCCC
Confidence 4445564 56667788899999 888877655433222222222211 111 0011 222222 21111110
Q ss_pred -------CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 85 -------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 85 -------~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
.+..+.+++.++.|..+|.. ++...... .+...+.++...+++. ++.++.++.|..+|.. ++....+..
T Consensus 99 ~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 99 IVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp --CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred cccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 14567888889999999998 77765553 2444566677777776 6667788999999988 887777776
Q ss_pred CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
....+.++...++|.+.+.+ +.|..|| .+++.+..+......+.++...++|...+ ++ .++.+..++.. ++.
T Consensus 175 ~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-~~~gl~~~~~~-g~~--- 246 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TS-LDGHLYAINPD-GTE--- 246 (330)
T ss_dssp SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EE-TTTEEEEECTT-SCE---
T ss_pred CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-Ec-CCCeEEEECCC-CCE---
Confidence 66677888888888877777 9999999 77777777665666788888988886554 44 47888888743 322
Q ss_pred eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
................. +++ .|..++.+|.|..+|. +++.+.
T Consensus 247 --~~~~~~~~~~~~~~~~~-----~~g-~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 247 --KWRFKTGKRIESSPVIG-----NTD-TIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp --EEEEECSSCCCSCCEEC-----TTS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred --eEEeeCCCCccccceEc-----CCC-eEEEecCCCCEEEECC-CCcEEE
Confidence 12222222222333332 344 5778888999999995 565543
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=4e-07 Score=88.68 Aligned_cols=216 Identities=19% Similarity=0.220 Sum_probs=140.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..+..++.++.|..+|.. ++....+......+... ... ....+.+++.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~------------------~~~----------~~g~l~vgt~~~ 157 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP------------------IVS----------EDGTIYVGSNDN 157 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC------------------EEC----------TTSCEEEECTTS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee------------------EEc----------CCCEEEEEcCCC
Confidence 3456667777888888877 66655544222111111 100 033477888889
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
.|..||.. ++...... .....+.++.+.++|. ++.++ +.|..+| .+++....+......+.++...++|.+.+.
T Consensus 158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFK-TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp EEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred EEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence 99999999 77765553 2345667777777776 44454 7899999 788777776655567889999999887777
Q ss_pred EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEe
Q 008058 177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (579)
Q Consensus 177 ~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (579)
.. +.+..+|. +++.+..+......+..+.+.+++.. ..++ .++.+..+|. +++.. .........+.....
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~ 302 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTI-YFGS-YDGHLYAINP-DGTEK-----WNFETGSWIIATPVI 302 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCE-EEEC-TTCEEEEECT-TSCEE-----EEEECSSCCCSCCEE
T ss_pred cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeE-EEec-CCCCEEEECC-CCcEE-----EEEEcCCccccceEE
Confidence 76 88888874 56666666655444556667667754 4455 5778999985 44322 223333334444444
Q ss_pred cCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 256 DNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 256 ~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
. ++|. |..++.+|.+++...+
T Consensus 303 d-----~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 303 D-----ENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp C-----TTCC-EEEECTTSCEEEEEC-
T ss_pred c-----CCCE-EEEEcCCCeEEEEecc
Confidence 3 4555 6778999999988754
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.84 E-value=2.6e-07 Score=90.79 Aligned_cols=188 Identities=10% Similarity=0.107 Sum_probs=117.5
Q ss_pred eEEEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++|+++|+++++-.. ++.|.+||..+++.+..+........ .......+++.+.
T Consensus 70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~------------~~~~~~~v~vd~~------- 130 (343)
T 2qe8_A 70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITL------------SNSFVNDLAVDLI------- 130 (343)
T ss_dssp EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSC------------TTCCCCEEEEETT-------
T ss_pred eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcc------------cccccceEEEecC-------
Confidence 45699999986665433 57899999999997776653211000 0011123333322
Q ss_pred cCCcEEEEE-E---CCCeEEEEEccCCeEEEEecCCCC-----------------------------CCEEEEEEccCCC
Q 008058 84 LGSSLLVLG-T---GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGS 130 (579)
Q Consensus 84 ~~~~~l~~~-~---~~g~i~iwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~~~~~~ 130 (579)
+..++++ . .++.|.+||+.+++....+ .+|. ..+..++|+|+|+
T Consensus 131 --~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~ 207 (343)
T 2qe8_A 131 --HNFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE 207 (343)
T ss_dssp --TTEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred --CCEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence 2334444 3 5678999999888765333 2221 2368999999999
Q ss_pred EEEEEeCCC-cEEEEeCC---CCc-----eee--EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008058 131 CIYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 131 ~l~s~~~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~ 197 (579)
.|+.+..++ .++.++.. .+. ... ...++......++++++|.++++.. +.|.+||..+++.......
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~ 287 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD 287 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence 998887766 55555431 111 000 1112334567799999998888776 8999999856654332222
Q ss_pred -CCCCEEEEEEecCCCEEEEEe
Q 008058 198 -HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 198 -h~~~v~~l~~~~~~~~l~s~s 218 (579)
+...+.+++|.++++.+++.+
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEEC
T ss_pred CceecCCeeEECCCCcEEEEeC
Confidence 245688999999988777665
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.83 E-value=4.2e-06 Score=78.80 Aligned_cols=190 Identities=9% Similarity=-0.030 Sum_probs=118.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++++-..++.|..+++..+...... ........+++++|++..++.+. ..+.|.++++..................
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~ 126 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG 126 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE
Confidence 344444455678999999776543222 22335689999999776666554 5678999998643322222222246789
Q ss_pred EEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 165 MAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 165 l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
++++|++..|+.+. +.|..+++... ....+. ........++++|++..|+.+....+.|.++++......
T Consensus 127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--- 202 (267)
T 1npe_A 127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--- 202 (267)
T ss_dssp EEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred EEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE---
Confidence 99999655554443 47888887543 233332 233467899999988777777667789999998754321
Q ss_pred eEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeeccc
Q 008058 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 290 (579)
... ...... ..++. ++..|+.+. ..+.|.++|..+++.+...
T Consensus 203 ~~~--~~~~~P-~gi~~-------d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 203 KVL--EGLQYP-FAVTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEE--ECCCSE-EEEEE-------ETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEe--cCCCCc-eEEEE-------eCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 111 111112 22333 334555554 5689999999988776554
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=2.1e-06 Score=78.00 Aligned_cols=174 Identities=10% Similarity=0.156 Sum_probs=119.2
Q ss_pred EEccCCCEEEEEeCC--CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fs~dg~~las~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|++ +.++.+.+.+ ..|+++|..+|+.+..+...... | ... +... ++.+.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-----f---------geG---i~~~----------~~~ly 78 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-----F---------GAG---IVAW----------RDRLI 78 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-----C---------EEE---EEEE----------TTEEE
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-----c---------eeE---EEEe----------CCEEE
Confidence 6765 5555555554 48999999999998877532110 0 000 0100 13444
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (579)
.+.-.++.+.+||..+.+.+.++..+..+ ++++ ++++.|+.+..++.|.++|..+.+.+.++.... ..++.
T Consensus 79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTPRARFRYPGEG--WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEECSSCC--CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 55556788999999999998887543222 4444 577777777788999999999999888776422 24566
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008058 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~l~s~s 218 (579)
+.+. +|+.++..- ..|.+.|.++++.+..+.-. ..-.+.|+++|+++.|+.+|
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 7766 777665553 89999999999998877521 13468899999888777776
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=6.3e-06 Score=88.41 Aligned_cols=200 Identities=15% Similarity=0.170 Sum_probs=126.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+..+............... ... .....+ +..+++++.++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~--~~~~~~------------~~~v~v~~~dg 127 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD----AVN--RGVALW------------GDKVYVGTLDG 127 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCC--CCCEEE------------BTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcccccccccc----CCc--cceEEE------------CCEEEEEcCCC
Confidence 456777888899999999999999888643321110000000 000 000011 56788999999
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCC--------
Q 008058 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTK-------- 160 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~-------- 160 (579)
.|..+|..+|+.+++...........+...| .+..++.+.. +|.|+.+|..+|+.+..+.....
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~ 207 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH 207 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc
Confidence 9999999999998877542111000000111 1335555543 58999999999999888753110
Q ss_pred -----------------------CeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEEee
Q 008058 161 -----------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQKFS 196 (579)
Q Consensus 161 -----------------------~v~~l~~~p~g~~l~~~~--g-------------------~i~vwd~~~~~~~~~~~ 196 (579)
....++++|++..++.+. + .|..+|.++|+.+..++
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 112468888888887776 3 39999999999988776
Q ss_pred c--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 197 G--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 197 ~--h~-------~~v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
. |. .+.....+..+|+ .++.++ .+|.++++|..+++..
T Consensus 288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI 337 (668)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence 3 32 3333334445665 466655 7999999999998754
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=1.5e-06 Score=91.31 Aligned_cols=245 Identities=17% Similarity=0.132 Sum_probs=148.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc-EEEEEEC-
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG- 94 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~~~~- 94 (579)
+..++.++.|+.|.-+|..+|+.+..++...........+.+ +.... .. ++. .+++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP------------~v~~~-~~------~G~~~v~vg~~~ 177 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP------------TIVKD-GK------TGKVLLIHGSSG 177 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC------------EEEEC-TT------TCCEEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC------------EEeCC-Cc------CCcEEEEEeccc
Confidence 557778888999999999999998877533211000000011 00000 00 012 5666653
Q ss_pred -----CCeEEEEEccCCeEEEEecCCCC---------------------------------------CCE-EEEEEccCC
Q 008058 95 -----GGDVLALAVSAGQLKWRLSDCHP---------------------------------------GGV-SAISFATHG 129 (579)
Q Consensus 95 -----~g~i~iwd~~~~~~~~~~~~~h~---------------------------------------~~V-~~l~~~~~~ 129 (579)
+|.|..+|..+|+.+++...... ..+ ..+++.|+.
T Consensus 178 ~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~ 257 (582)
T 1flg_A 178 DEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET 257 (582)
T ss_dssp GGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred cccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence 68899999999998876532100 000 134666777
Q ss_pred CEEEEEeC--------------------C----CcEEEEeCCCCceeeEeec--CCC-------CeeEEEEc-cCCC---
Q 008058 130 SCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRA--STK-------GISCMAVS-SDGK--- 172 (579)
Q Consensus 130 ~~l~s~~~--------------------d----g~v~iwd~~~~~~~~~~~~--~~~-------~v~~l~~~-p~g~--- 172 (579)
..++.+.. | +.|..+|..+|+.+..++. |.. ...-+... .+|+
T Consensus 258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~ 337 (582)
T 1flg_A 258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVK 337 (582)
T ss_dssp TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEE
T ss_pred CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEE
Confidence 77777663 2 5899999999999888764 211 11112222 4674
Q ss_pred EEEEEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------------EEE
Q 008058 173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------------RFM 205 (579)
Q Consensus 173 ~l~~~~--g~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~l 205 (579)
.++.++ |.++++|.++|+.+..+.... .++ ..+
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~ 417 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM 417 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence 666676 899999999999887664321 000 134
Q ss_pred EEecCCCEEEEEec--------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058 206 TFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 206 ~~~~~~~~l~s~s~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
+++|+...+++... .++.|..||+.+++.. .............
T Consensus 418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~ 492 (582)
T 1flg_A 418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-----WEHKEHLPLWAGV 492 (582)
T ss_dssp EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-----EEEEESSCCCSCC
T ss_pred eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-----EEecCCCCCcccc
Confidence 56665554444321 2578999999888743 3332222211111
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
.. ..+..++.++.||.++.||.++|+.+...+
T Consensus 493 ~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 493 LA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EE------ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eE------eCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 11 245678889999999999999999987654
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.73 E-value=6.3e-06 Score=80.04 Aligned_cols=249 Identities=14% Similarity=0.089 Sum_probs=136.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccc--cccccccCccceEEeeecccccccccCCcE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++|+++|+++.++..++.|..|+..++... .+............... ............+++.+. ...
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g~ 93 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NNQ 93 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC---------CCc
Confidence 489999987888888899999998766543 22211000000000000 000000011223444321 234
Q ss_pred EEEEECCCeEEEEEccCCeEEEEe--cCC-CCCCEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCC
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDPL 147 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~--~~~-h~~~V~~l~~~~-~~~~l~s~~~-----------------dg~v~iwd~~ 147 (579)
|+++...+.|..+|..++...... ..+ ......++++.+ +|+..++... ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 677766666888888766432111 111 123578999999 8976665432 3679999987
Q ss_pred CCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecC--
Q 008058 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-- 220 (579)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~-- 220 (579)
+++...... .......++++|+|+.|+.+. +.|.+|++.... ....+....+ ...+++.++|++.++.. .
T Consensus 174 ~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~-~~~ 250 (322)
T 2fp8_A 174 TKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS-EEL 250 (322)
T ss_dssp TTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE-EET
T ss_pred CCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec-Ccc
Confidence 675433222 223457899999999776664 799999987521 1122221223 78899999998766654 2
Q ss_pred --------CCeEEEEEcCCCccccceeEEeeecC--ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 221 --------ERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 221 --------d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
.+.|..+|.. ++.. ..+..... ......+.+ .++...++....+.|..++++
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence 3567777764 3321 11221111 122333334 355555555567788888764
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=9e-07 Score=81.12 Aligned_cols=173 Identities=9% Similarity=0.053 Sum_probs=118.8
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.|+ ++.++.+.+.+|.|+++|.++|+.+..+ ... .. |.. .+.. . ++.+..+
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~----Fge------------Git~--~--------g~~Ly~l 111 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NI----FAE------------GLAS--D--------GERLYQL 111 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TC----CEE------------EEEE--C--------SSCEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-Cc----cee------------EEEE--e--------CCEEEEE
Confidence 666 3556666777889999999999987665 211 10 100 0000 0 1344445
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeEEE
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISCMA 166 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~ 166 (579)
.-.++.+.+||..+.+.+.++..+.. =++++ +|++.|+.+..++.|.++|..+.+.+.++.... ..++.+.
T Consensus 112 tw~~~~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 55678899999999999887753322 23444 578888888889999999999999888766422 1456778
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008058 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~l~s~s 218 (579)
|. +|++.+..- +.|.+.|.++++.+..+.-. ..-.+.|+|+|+++.|+.+|
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 77 776665553 89999999999988877421 13568999999877666665
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=9.3e-06 Score=75.35 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=124.2
Q ss_pred EEEEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCee
Q 008058 88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 88 ~l~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
.|+.++. ++.|.++|+.+++.+..+.-+.......+++. ++.++.+. .++.+.++|..+++.+.++..... .
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~ 108 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--D 108 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--S
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--C
Confidence 4666654 47899999999998877643322233455554 55655554 688999999999999998864311 1
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~ 236 (579)
...+++||+.++++. +.|.++|..+.+.+.++.-.. ..++.+.|. +|+ +.+....++.|.+.|..+++..
T Consensus 109 g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~- 185 (266)
T 2iwa_A 109 GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL- 185 (266)
T ss_dssp CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE-
T ss_pred eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE-
Confidence 234666888777766 899999999998887775221 236788888 675 4444435789999999998754
Q ss_pred ceeEEeee-----------cCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCc
Q 008058 237 ASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNI 284 (579)
Q Consensus 237 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 284 (579)
....+. ........++++ |+++.+++++ ..+++.+.++...
T Consensus 186 --~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 186 --GWILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp --EEEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred --EEEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence 222221 112356778887 8876655554 5788888886543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.67 E-value=1.4e-05 Score=83.93 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=120.5
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 17 g~~las~s~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
+..++.++. ++.|.-+|. .+|+.+..+..............+ .... .... .+..+++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~~~v~v~~~ 123 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----VVDR--GLAY------------GAGQIVKKQA 123 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------ETTEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccc----cccc--ccEE------------ECCEEEEEeC
Confidence 445666777 899999999 999999887633211000000000 0000 0000 1567889999
Q ss_pred CCeEEEEEccCCeEEEEecCCC-C--CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC---
Q 008058 95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG--- 161 (579)
Q Consensus 95 ~g~i~iwd~~~~~~~~~~~~~h-~--~~V~~-l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (579)
++.+..+|..+|+.+++..... . ..+.+ .... ++ .++.++. ++.|+.+|..+|+.+.++......
T Consensus 124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 9999999999999987764221 0 01111 1111 34 5666654 799999999999988876542210
Q ss_pred -----------------------------------eeEEEEccCCCEEEEECC------------------eEEEEECCC
Q 008058 162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD 188 (579)
Q Consensus 162 -----------------------------------v~~l~~~p~g~~l~~~~g------------------~i~vwd~~~ 188 (579)
...++++++...++.+.+ .|..+|.++
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 023567776666665542 599999999
Q ss_pred CeeeEEeec--CC--------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 189 HKKMQKFSG--HP--------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 189 ~~~~~~~~~--h~--------~~v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|+.+..++. |. .++. +...++|+ .++.++ .+|.++++|..+++..
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI 339 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence 998877753 21 2221 23335774 445554 7899999999988754
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.65 E-value=3e-05 Score=72.86 Aligned_cols=194 Identities=9% Similarity=-0.062 Sum_probs=117.7
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+++.|..+. .++.|.+++..++.....+.... .....+++.+.. +.+
T Consensus 40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------~~p~~ia~d~~~--------~~l 93 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------------------GSPEGIALDHLG--------RTI 93 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC------------------CCEEEEEEETTT--------TEE
T ss_pred EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC------------------CCccEEEEEecC--------CeE
Confidence 458898776666554 46789999987654332221100 011233333321 333
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (579)
.++-...+.|.++++...... .+..........++++|++..|+.+.. .+.|..+++. +.....+. ........
T Consensus 94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence 444445678999998754322 222222246799999997777666654 3688888875 43333332 23346789
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
++++|++..|+.+. +.|.++|.........+.+ ......+++. +..++.+....+.|.++|..+++.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 99999887776665 7999999976544333333 2334566654 455666654678999999987763
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=4e-06 Score=76.85 Aligned_cols=167 Identities=10% Similarity=0.067 Sum_probs=108.8
Q ss_pred EEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008058 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (579)
Q Consensus 109 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~v 183 (579)
+.++......-..++.|+ ++..+.+++.+| .|+.+|+.+++.+..+.... ......+.++++.+.... +.+.+
T Consensus 34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 334422233445899998 676666777766 89999999999998876543 333333334455555554 89999
Q ss_pred EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc---eeeEeEEecCCcc
Q 008058 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGV 260 (579)
Q Consensus 184 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 260 (579)
||..+.+.+.++.-.. ....++++++.|+.+. .++.|.++|..+.+... ........ ..++-+.+.
T Consensus 112 ~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---~I~V~~~g~~~~~lNELe~~---- 180 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---TITVTAHGEELPELNELEWV---- 180 (262)
T ss_dssp EETTTCCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---EEECEETTEECCCEEEEEEE----
T ss_pred EECccCcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---EEEeccCCccccccceeEEE----
Confidence 9999999999987432 2234456777777664 57889999998876542 12222111 222223442
Q ss_pred cCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 261 DDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 261 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
+|...+..-.++.|.+.|.++++.+..+
T Consensus 181 --~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 181 --DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp --TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred --CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 5654444445889999999999876654
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.53 E-value=4.5e-06 Score=76.48 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=108.6
Q ss_pred eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008058 107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (579)
Q Consensus 107 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~v 183 (579)
+.+.++......-..++.|+ ++..+.+.+.+|.|+.+|+.+++.+..+ -.. ........++++.|+... +.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEE
Confidence 34444432333456889997 3556677778899999999999988887 333 333322333444555444 89999
Q ss_pred EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCce---eeEeEEecCCcc
Q 008058 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGV 260 (579)
Q Consensus 184 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 260 (579)
||..+.+.+.++..... ...++++++.|+.+. .++.|.++|..+.+... ......... .+.-+.+.
T Consensus 121 ~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~---~I~V~~~g~~v~~lNeLe~~---- 189 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG---AVQVKLRGQPVELINELECA---- 189 (268)
T ss_dssp EETTTTEEEEEEECSSC---CCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEEE----
T ss_pred EECCcCcEEEEEeCCCc---eeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE---EEEeCCCCcccccccccEEe----
Confidence 99999999999974322 233446788887775 68899999998877542 112212211 22333442
Q ss_pred cCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 261 DDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 261 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
+|...+..-.++.|.+.|.++++.+..+
T Consensus 190 --dG~lyanvw~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 190 --NGVIYANIWHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp --TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred --CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence 6654444445889999999999877654
No 255
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=0.00027 Score=68.11 Aligned_cols=231 Identities=7% Similarity=-0.041 Sum_probs=132.2
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeE
Q 008058 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (579)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i 98 (579)
+|+.+. ...|+..|+.+......+... .....+.|.+.+ +.++++-...+.|
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~-------------------~~p~g~~~d~~~--------~~ly~~D~~~~~I 54 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVAS--------NRIYWSDLSQRMI 54 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSC-------------------SSEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCC-------------------CceEEEEEEeCC--------CEEEEEECCCCcE
Confidence 344444 346888898876654433211 112345555432 3344444456789
Q ss_pred EEEEccC---CeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058 99 LALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (579)
Q Consensus 99 ~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l 174 (579)
..+++.. +.....+.........++++.+.+..|+.+ ...+.|.++|+........+.........++++|.+..+
T Consensus 55 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134 (316)
T ss_dssp EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred EEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE
Confidence 9999876 122222222222456889998766555544 567899999986443333333334577999999966555
Q ss_pred EEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058 175 ATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 175 ~~~~----g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
+.++ +.|..+++.. .....+ ...-.....++++|++..|+.+-...+.|..+|+...... .+.........
T Consensus 135 y~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~ 210 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAH 210 (316)
T ss_dssp EEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSS
T ss_pred EEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCC
Confidence 4443 5788888753 333333 2234567899999987777776656789999998754322 22221111111
Q ss_pred eEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
...+++. ++..+++-...+.|..++..+++.+
T Consensus 211 P~giav~------~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 211 PFSLAVF------EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cEEEEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence 2233332 3455555556789999987776543
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=5.6e-05 Score=72.65 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=122.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|+++|+++++-..++.|..||..+. ....+.. .. ....+++.+. ++++
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~------------------~p~gia~~~d---------G~l~ 86 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EG------------------KVSGLAFTSN---------GDLV 86 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SS------------------EEEEEEECTT---------SCEE
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CC------------------CceeEEEcCC---------CcEE
Confidence 4589999986666667889999987653 3322221 11 1223333321 5544
Q ss_pred EEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eeEee---------c
Q 008058 90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR---------A 157 (579)
Q Consensus 90 ~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~---------~ 157 (579)
++..... .|..+|..+++...............++..+++..+++...++.|+.+|...++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 4433322 4777787787754222112223345666666554444444688999999875531 11110 1
Q ss_pred CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.-...+.+ +|+++.|+.+. +.|..|++.. ++. ...+.. ......++++++|+++++.. ..+.|.+++..
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~- 241 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD- 241 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-
Confidence 11234555 78888777665 7999999874 322 222221 13456789999998765544 57889999875
Q ss_pred CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 273 (579)
++.. .+.....+.....+++|... .|++..|++++..
T Consensus 242 G~~~---~~~~~~~~~~~p~~~a~~g~--~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 RSTT---IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG 278 (306)
T ss_dssp CCEE---EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred CCEE---EEeecccccCCceEEEEecc--cCCCCEEEEECCC
Confidence 3321 11122222233455666310 0455666665543
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=3.5e-05 Score=83.91 Aligned_cols=191 Identities=12% Similarity=0.032 Sum_probs=108.0
Q ss_pred EEEEc-cCCCEEEEEeC-CC----cEEEEECCCC-eEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058 10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 10 ~~~fs-~dg~~las~s~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+|| |||++||.+.. +| +|+++|+.+| +.+. . ........+.|.+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~-----------------~~~~~~~~~~WspD------ 231 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---D-----------------KVSGTNGEIVWGPD------ 231 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---C-----------------CEEEECSCCEECSS------
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---c-----------------cccCceeeEEEecC------
Confidence 45899 99999996653 23 4999999988 5211 0 00001234556554
Q ss_pred ccCCcEEEEEECC-----CeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-e
Q 008058 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-L 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~-----g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~-~ 151 (579)
++.|+....+ ..|+++++.++.. ...+...+.....++.|+|||++|+..+. ...|+++|+.++. .
T Consensus 232 ---g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 ---HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp ---TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred ---CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 4455555544 2588888877642 11221223345678899999999876653 3468889987752 2
Q ss_pred e--eEe-ecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 152 L--GKF-RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 152 ~--~~~-~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
. ..+ ........++.|+.++.+++.+. ..|..+|+.++..... +..|...+.--.+++.+.+|+.....+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~ 388 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA 388 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence 2 333 32334556666554444444433 3788888865322222 333444333233444566666665567
Q ss_pred Ce--EEEEEc
Q 008058 222 RY--IALWRT 229 (579)
Q Consensus 222 ~~--i~vwd~ 229 (579)
+. |.++++
T Consensus 389 g~~~l~~~dl 398 (751)
T 2xe4_A 389 GLTRIWTMMA 398 (751)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 75 455554
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=2e-05 Score=71.60 Aligned_cols=168 Identities=10% Similarity=0.006 Sum_probs=107.2
Q ss_pred EEEEecCCCCCCEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEE
Q 008058 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLK 182 (579)
Q Consensus 108 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~ 182 (579)
.+.++......-..++.|++ +..+.+.+.+ ..|+.+|+.+++.+..+..... +......+.++.|.... +.+.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEE
Confidence 34444222335577999986 5555566655 4899999999999988764433 23333333455555554 8999
Q ss_pred EEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc---eeeEeEEecCCc
Q 008058 183 TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGG 259 (579)
Q Consensus 183 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 259 (579)
+||..+.+.+.+++.... ...+++++..|+.+- .++.|.++|..+.+... ........ ..+.-+.+
T Consensus 89 v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~---~I~V~~~g~~~~~lNeLe~---- 157 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVG---SIKVTAGGRPLDNLNELEW---- 157 (243)
T ss_dssp EEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE----
T ss_pred EEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEE---EEEEccCCcccccceeeEE----
Confidence 999999999999974332 234446777777665 68899999999876542 12222121 12223333
Q ss_pred ccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 260 VDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 260 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.+|...+..-.+..|.+.|.++++.+..+
T Consensus 158 --~~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 158 --VNGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp --ETTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred --eCCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 25664444446789999999999876544
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.42 E-value=8.5e-05 Score=78.05 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=117.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+..+...........+ ..... ....+ +..+++++.++
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~------~~~~~--g~a~~------------~~~v~~~t~dg 127 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCC------DVVNR--GAAIY------------GDKVFFGTLDA 127 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSS------CSCCC--CCEEE------------TTEEEEEETTT
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccccccc------ccCCC--ccEEE------------CCEEEEEeCCC
Confidence 345556665445899999999999887643221110000 00000 00011 56788999999
Q ss_pred eEEEEEccCCeEEEEecCCC-C--CCEE-EEEEcc---CCC-EEEEEe------CCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 97 DVLALAVSAGQLKWRLSDCH-P--GGVS-AISFAT---HGS-CIYSAG------ADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h-~--~~V~-~l~~~~---~~~-~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.|..+|..+|+.+++..... . ..+. ...+.. +|+ .++.++ .++.|+.+|..+|+.+.........+
T Consensus 128 ~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~ 207 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM 207 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE
T ss_pred EEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc
Confidence 99999999999987764321 0 0111 111111 233 566654 37899999999999877654321000
Q ss_pred -----------------------------------------eEEEEccCCCEEEEEC-----------------------
Q 008058 163 -----------------------------------------SCMAVSSDGKMLATAA----------------------- 178 (579)
Q Consensus 163 -----------------------------------------~~l~~~p~g~~l~~~~----------------------- 178 (579)
..++++|+..+++.+.
T Consensus 208 ~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~ 287 (582)
T 1flg_A 208 GRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDS 287 (582)
T ss_dssp EEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCC
T ss_pred ccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCC
Confidence 1356667666666443
Q ss_pred ---CeEEEEECCCCeeeEEeec--CCC----CEEE-EEEe---cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058 179 ---GQLKTFNCSDHKKMQKFSG--HPG----AVRF-MTFS---DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 179 ---g~i~vwd~~~~~~~~~~~~--h~~----~v~~-l~~~---~~~~---~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
+.|..+|.++|+.+-.++. |.. .+.. +.+. .+|+ .++.++ .+|.++++|..+++..
T Consensus 288 ~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 288 LYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp TTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred cccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEe
Confidence 4799999999999877753 321 1111 2222 4664 555555 7999999999988754
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.41 E-value=3.4e-05 Score=80.96 Aligned_cols=203 Identities=10% Similarity=0.066 Sum_probs=121.4
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 17 g~~las~s~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
+..++.++. ++.|.-+|. .+|+.+..+.............. .. ....+...+.+.. ....+++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~----~~---~~~g~av~p~~g~-----~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACC----DL---VNRGLAYWPGDGK-----TPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSS----CS---CCCCCEEECCCSS-----SCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccc----cc---cccceEEEecCCc-----ceeEEEEEcC
Confidence 446667777 899999999 99999988764322110000000 00 0000111010000 0234888999
Q ss_pred CCeEEEEEccCCeEEEEecCCCC---CCEEE-EEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeecCCCC---
Q 008058 95 GGDVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG--- 161 (579)
Q Consensus 95 ~g~i~iwd~~~~~~~~~~~~~h~---~~V~~-l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (579)
++.+..+|..+|+.+++...... ..+.+ ..+ .++ .++.++ .+|.|+.+|..+|+.+..+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~ 207 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL 207 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence 99999999999999877642210 01111 111 144 455554 3899999999999988776643211
Q ss_pred ----------------------------------e-eEEEEccCCCEEEEEC--C----------------eEEEEECCC
Q 008058 162 ----------------------------------I-SCMAVSSDGKMLATAA--G----------------QLKTFNCSD 188 (579)
Q Consensus 162 ----------------------------------v-~~l~~~p~g~~l~~~~--g----------------~i~vwd~~~ 188 (579)
+ ..+++.++..+++.+. + .|..+|.++
T Consensus 208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T 287 (599)
T 1w6s_A 208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT 287 (599)
T ss_dssp TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCC
Confidence 0 1356667777777765 2 799999999
Q ss_pred CeeeEEeecCC----------CCEEEEEEe-cCC---CEEEEEecCCCeEEEEEcCCCccc
Q 008058 189 HKKMQKFSGHP----------GAVRFMTFS-DNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 189 ~~~~~~~~~h~----------~~v~~l~~~-~~~---~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
|+.+-.++... .++. +... .+| +.++.++ .+|.++++|..+++..
T Consensus 288 G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 288 GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALV 346 (599)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCCCCEe
Confidence 99887775322 1221 2222 467 3455554 7999999999988754
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00016 Score=69.96 Aligned_cols=186 Identities=14% Similarity=0.109 Sum_probs=115.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEe-cC---------C--------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SD---------C--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~---------~--------h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~ 147 (579)
+.+++++..++.|..|+..++....-. .. + ....+.++++.+++..|+.+...+.|..+|..
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence 566788888999999998876543111 00 0 11357899999833456666555668899976
Q ss_pred CCceeeEeec-----CCCCeeEEEEcc-CCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCE
Q 008058 148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV 202 (579)
Q Consensus 148 ~~~~~~~~~~-----~~~~v~~l~~~p-~g~~l~~~~-------------------g~i~vwd~~~~~~~~~~~~h~~~v 202 (579)
++.. ..+.. .......+++.| +|++.++.. +.|..||..+++......+ ....
T Consensus 110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p 187 (322)
T 2fp8_A 110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVP 187 (322)
T ss_dssp CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCC
T ss_pred CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccC
Confidence 5532 22221 113578899999 998777642 4688899877764332222 2335
Q ss_pred EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc----------
Q 008058 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------- 272 (579)
Q Consensus 203 ~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------- 272 (579)
..++|+|++++|+.+....+.|.+|++............. ... ...++++ ++|.+.++...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence 6799999998776665457899999987643211111111 122 4556666 78876666544
Q ss_pred CCeEEEEECC
Q 008058 273 TGVCYIWYGQ 282 (579)
Q Consensus 273 dg~i~iwd~~ 282 (579)
.+.|..+|.+
T Consensus 259 ~~~v~~~d~~ 268 (322)
T 2fp8_A 259 DPKGIKFDEF 268 (322)
T ss_dssp EEEEEEECTT
T ss_pred ccEEEEECCC
Confidence 3567777653
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00048 Score=68.45 Aligned_cols=199 Identities=6% Similarity=-0.084 Sum_probs=119.6
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPL 147 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~ 147 (579)
..++|.+.+ +.++++-...+.|..+++..+.....+ ........++++.+.+..|+.+ ...+.|.+.++.
T Consensus 119 ~gl~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d 189 (386)
T 3v65_B 119 IALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 189 (386)
T ss_dssp EEEEEETTT--------TEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred EEEEEecCC--------CeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence 356666542 344444456677999998876543333 2223345788998866665544 456788888876
Q ss_pred CCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~ 223 (579)
.......+...-.....++++|.+..|+.+. +.|..+++............-.....|+|+|++..|+.+-...+.
T Consensus 190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence 4433333333335779999999776666554 578888876543332233334557899999877777776656788
Q ss_pred EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
|..+++...... .+.. ...... ..+++. ++..+++-...+.|..++..+++.+
T Consensus 270 I~~~d~dG~~~~---~~~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 270 IERANLDGSHRK---AVIS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEECTTSCSCE---EEEC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEeCCCCeeE---EEEE-CCCCCc-eEEEEE------CCEEEEeeCCCCeEEEEECCCCcce
Confidence 999998754322 1111 111122 223332 3455555556778888886666544
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.32 E-value=0.001 Score=66.38 Aligned_cols=192 Identities=8% Similarity=-0.060 Sum_probs=115.0
Q ss_pred cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.+..+-...+.|+.+++.... ....+.........++++.+.++.|+.+ ...+.|.+.++........+.......
T Consensus 125 ~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P 204 (400)
T 3p5b_L 125 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 204 (400)
T ss_dssp EEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCE
T ss_pred ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCc
Confidence 333444456778888886521 1112223344568899999855555544 567889999986554433344344468
Q ss_pred eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
..|+++|.+..|+.+. +.|...++........+...-.....|++++++..|+.+-...+.|..+|+......
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~--- 281 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--- 281 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---
Confidence 9999999665555543 578888886543333333334567899999988877777656788999998764422
Q ss_pred eEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
.+.... ..........+ .+..+++-...+.|..+|..+++.+.
T Consensus 282 ~~~~~~~~l~~P~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 282 TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEEECSSTTSSEEEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEEeCCCCCCCCEEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 222211 11222222222 33455555567889999977776543
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0017 Score=63.34 Aligned_cols=198 Identities=6% Similarity=-0.078 Sum_probs=117.6
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPL 147 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~ 147 (579)
..++|.+.+ +.++++-...+.|..+++..+...... ........++++.+.+..|+.+ ...+.|.+.++.
T Consensus 76 ~~l~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 76 IALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp EEEEEETTT--------TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEeccc--------cEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC
Confidence 356666542 334444445677999998876543222 2223456789998866555544 456789999986
Q ss_pred CCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~ 222 (579)
.......+...-.....++++|.+..|+.+. +.|..+++.... ...+ ...-.....++++|++..|+.+-...+
T Consensus 147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 4433323333335679999999666655554 568888876432 2333 223445789999987777777665678
Q ss_pred eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
.|..+++...... .+.. ...... ..+++. ++...++-...+.|..++..+++.+
T Consensus 226 ~I~~~~~dG~~~~---~~~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 226 VIERANLDGSHRK---AVIS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEEETTSCSCE---EEEC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEEeCCCCceE---EEEe-CCCCCc-eEEEEE------CCEEEEecCCCCeEEEEEccCCCcc
Confidence 8999998764322 1111 111112 223332 3444455555778888886666543
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.23 E-value=0.0015 Score=71.63 Aligned_cols=245 Identities=9% Similarity=0.142 Sum_probs=146.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .++..+++|+ |-.|+.++-|..|+..++.... +..... . .+-....+.++....
T Consensus 310 ~~i--~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~-~----------~~l~~~~V~~i~~d~-------- 366 (795)
T 4a2l_A 310 RSV--RSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPY-K----------NSLSDNVVSCIVEDK-------- 366 (795)
T ss_dssp SCE--EEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTT-S----------SSCSCSSEEEEEECT--------
T ss_pred CcE--EEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCC-C----------CCCCCCeeEEEEECC--------
Confidence 346 3447788886 4456666668888866554322 211000 0 000111233333222
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
...|.+|+.++-|..|+..++....-... -....|.++...++|+.|..|+.++-+..||..+++... +.
T Consensus 367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~ 443 (795)
T 4a2l_A 367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FN 443 (795)
T ss_dssp --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-EC
T ss_pred --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-ee
Confidence 33477899988899999988765422211 123579999998888757777777779999988776433 32
Q ss_pred c-----CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 157 A-----STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 157 ~-----~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
. ....|.++...++|++.+...+-+.+||..+++....... +...|.++...++|+..+.+ .+ -+.
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~-Gl~ 520 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG--EE-GLS 520 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE--SS-CEE
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe--CC-ceE
Confidence 1 2457999999999987776666789999887754322111 23568999999999866544 34 488
Q ss_pred EEEcCCCccccceeE-EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 226 LWRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 226 vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.|+..+++. ..... .....+...+.++..+ ++|...+ ++.. -+..||.++.+
T Consensus 521 ~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 521 VFKQEGLDI-QKASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp EEEEETTEE-EECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTTE
T ss_pred EEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCCc
Confidence 888766542 00000 0001122345555554 6666444 4444 68888877654
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.23 E-value=0.00056 Score=65.86 Aligned_cols=198 Identities=7% Similarity=-0.067 Sum_probs=117.4
Q ss_pred eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q 008058 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLT 148 (579)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~ 148 (579)
.+.|.+.+ +.+..+-...+.|..+++..+.....+.........++++.+.+..|+.+ ...+.|.++++..
T Consensus 39 ~ld~d~~~--------~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 39 AVDFVFSH--------GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp EEEEEGGG--------TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeCC--------CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 56666543 34444445567799999876632111111122456789998755555544 4677899999864
Q ss_pred CceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~ 223 (579)
......+.........++++|.+..|+.+. +.|..+++.... ...+ ...-...+.|+++|++..|+.+-...+.
T Consensus 111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~ 189 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 189 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence 332222333445779999998655555443 578888876432 2233 2333456899999977777776656789
Q ss_pred EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
|..+++...... .+.. ...... ..+++. .+..+.+-...+.|..++..+++..
T Consensus 190 I~~~d~dG~~~~---~~~~-~~~~~P-~glav~------~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 190 IHKSNLDGTNRQ---AVVK-GSLPHP-FALTLF------EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEETTSCSCE---EEEC-SCCSCE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEcCCCCceE---EEec-CCCCCc-eEEEEe------CCEEEEEecCCCeEEEEECCCCCce
Confidence 999998754322 1111 111222 223332 2344555555788999998777654
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.22 E-value=0.00089 Score=61.63 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=127.1
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~ 146 (579)
....++|.+.. +.+.++...++.|...|.. ++.+.++..+-....-++++.+++.++++.-.++.+.++++
T Consensus 28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 45567777543 5566778888889999998 77776663333356889999998877676657788999987
Q ss_pred CCCce---eeEee------cCCCCeeEEEEccCCCEEEEEC--C--eEEEEECC-CCeeeEEee-------cCCCCEEEE
Q 008058 147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNCS-DHKKMQKFS-------GHPGAVRFM 205 (579)
Q Consensus 147 ~~~~~---~~~~~------~~~~~v~~l~~~p~g~~l~~~~--g--~i~vwd~~-~~~~~~~~~-------~h~~~v~~l 205 (579)
..... +.... ..+.....++|+|+++.|+++. . .|+.|+-. ....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 22221 1233678999999997777766 3 45555510 111122221 133457899
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-------ceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------AVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i 278 (579)
+++|....++..+..++.+.++|.... .. ....+... -.....+++. ++|+ |...++-+.+++
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~-lyIvsE~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGN-IYIVSEPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCC-EEEEETTTEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCC-EEEEcCCceEEE
Confidence 999987777777778889999997754 22 22233211 1234567777 8887 555588788888
Q ss_pred EEC
Q 008058 279 WYG 281 (579)
Q Consensus 279 wd~ 281 (579)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 754
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=9.6e-05 Score=79.26 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=127.3
Q ss_pred ceEEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeee
Q 008058 8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 8 ~~~~~fs~-dg~~las~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
...+++.| +|+.++.|+.++ .+.+||..+++....-... ......+...+...
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------------~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------------TKHDMFCPGISMDG 252 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------------CSCCCSSCEEEECT
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------------CCCCCccccccCCC
Confidence 34567787 888888887543 5778888776532110000 00000011111111
Q ss_pred cccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEe-CC-----CcEEEEeCC
Q 008058 76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAG-AD-----GMVCEIDPL 147 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~-~d-----g~v~iwd~~ 147 (579)
++.++++|+. +.++.+||+.+++....- ..+... -.++++.++|+.++.|+ .+ ..+.+||..
T Consensus 253 ---------~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 253 ---------NGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp ---------TSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ---------CCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 1667777774 457999999988764221 112222 13455667899988888 34 569999998
Q ss_pred CCceeeEe----ecCCCCeeEEEEccCCCEEEEE----------C-CeEEEEECCCCeeeEEeecCCC---------CEE
Q 008058 148 TGSLLGKF----RASTKGISCMAVSSDGKMLATA----------A-GQLKTFNCSDHKKMQKFSGHPG---------AVR 203 (579)
Q Consensus 148 ~~~~~~~~----~~~~~~v~~l~~~p~g~~l~~~----------~-g~i~vwd~~~~~~~~~~~~h~~---------~v~ 203 (579)
+++-...- ......-....+..++..++.| . ..+..||..+.........+.. .-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 76532210 0000000001112334444443 2 5688999887764433322211 223
Q ss_pred EEEEec-CCCEEEEEecCCC-----------eEEEEEcCCCccccceeEE--eeecCceeeEeEEecCCcccCCCcEEEE
Q 008058 204 FMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 204 ~l~~~~-~~~~l~s~s~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (579)
++.|.. +++.++.+|. ++ .+.+||..+..-. .+. .+........++.. |+++.++.
T Consensus 403 av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~R~~~~~~~l------~~g~i~v~ 472 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFARTFHTSVVL------PDGSTFIT 472 (656)
T ss_dssp EEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSCCBSCEEEEC------TTSCEEEE
T ss_pred eEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCCcccCCeEEC------CCCCEEEE
Confidence 445543 6666666653 22 5777777665422 111 11222112222322 78999999
Q ss_pred EEcC-----------CeEEEEECCCce
Q 008058 270 ISET-----------GVCYIWYGQNIE 285 (579)
Q Consensus 270 ~~~d-----------g~i~iwd~~~~~ 285 (579)
|+.+ ..+.+||..+.+
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCc
Confidence 8864 467888876643
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.13 E-value=0.0017 Score=62.07 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=109.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C-cEEEEeCCCCceeeEeec-CCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRA-STKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g-~v~iwd~~~~~~~~~~~~-~~~~v 162 (579)
+.++++-..++.|..||...+... ... ....+.++++.++|+.+++.... + .|..+|..+++....... .....
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 555555557888999998764332 221 23468999999999865554332 2 477788777765433221 12234
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEee---------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~---------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~ 230 (579)
..++..+++..+++.. +.|+.+|..+++. +.... +.-.....+ +|++++|+.+....+.|..|++.
T Consensus 120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 5566666665555553 8999999876531 21111 111234555 88888777776678899999987
Q ss_pred C-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
. ++.......... .....++++ ++|++.++....+.|.+|+..
T Consensus 198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECCC
Confidence 5 322111111111 123445555 788776666667788888754
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.12 E-value=0.0028 Score=69.62 Aligned_cols=239 Identities=12% Similarity=0.049 Sum_probs=142.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++..+++|+ |-.|+.++-|..|+..++....-......... +-....+.++...+. +..
T Consensus 360 ~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~~---------g~~ 419 (795)
T 4a2l_A 360 SCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESAR----------GIGSNNIKAVYVDEK---------KSL 419 (795)
T ss_dssp EEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETT---------TTE
T ss_pred EEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCccc----------CCCCccEEEEEEcCC---------CCE
Confidence 4447788886 44577776789999887765432211000000 000112223332211 444
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec------CC
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST 159 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~ 159 (579)
|.+|+.++-|..||..+++...-... .....|.++...++|+..+ |+.+ -+..||..+++....... ..
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCC
Confidence 78889888899999998875422210 1345799999988887544 4454 488999877654322111 23
Q ss_pred CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee-------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
..|.++...++|.+.+...+-+..||..+++. .+. .....|.++...++|...+++ .. -+..||..+.
T Consensus 498 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT--RE-GFYCFNEKDK 572 (795)
T ss_dssp CCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE--SS-CEEEEETTTT
T ss_pred ceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe--CC-CceeECCCCC
Confidence 57899999999987776667788999877765 332 123568899999999866554 24 4888998765
Q ss_pred ccccceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 233 KKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
+.. .+... -+...+..+..+ ++|...+++ ++-|..|+.++.+
T Consensus 573 ~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 573 QIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE--TTEEEEEETTTTE
T ss_pred cEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc--CCceEEEcCCCCc
Confidence 422 11111 122334445554 566654444 3567788877654
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.11 E-value=0.0017 Score=64.52 Aligned_cols=196 Identities=11% Similarity=-0.040 Sum_probs=113.5
Q ss_pred eEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 ~~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
..++|++.+..|.... ..+.|..++..++.....+....... ..++..+.. +.
T Consensus 119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p------------------~glavd~~~--------g~ 172 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP------------------GGLAVDWVH--------DK 172 (386)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC------------------CCEEEETTT--------TE
T ss_pred EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc------------------cEEEEEeCC--------Ce
Confidence 3458887665555444 46778888877654333222111011 112222211 33
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCeeE
Q 008058 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGISC 164 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~~~~~v~~ 164 (579)
+.++-...+.|.+.++...... .+.........++++.|.+..|+.+. .. +.|..+++. |.....+ ...-...+.
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNG 250 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred EEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCeee
Confidence 4444445567888877654432 22233345679999999777766654 33 678888875 3333333 223346789
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
|+++|++..|+.+. +.|..+|+........+.........|++. .+ .++.+....+.|..++..+++.
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCS
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcc
Confidence 99998777777665 789999987543333333334556788883 34 3444444678888888656543
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0032 Score=60.47 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=111.5
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC---CceeeE-eecCCCCeeEEE
Q 008058 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT---GSLLGK-FRASTKGISCMA 166 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~---~~~~~~-~~~~~~~v~~l~ 166 (579)
-+....|+..|+.+++....+ . ....+.+++|+++++.|+.+. .++.|+.+++.. +..... +...-.....++
T Consensus 6 ~~~~~~I~~i~~~~~~~~~~~-~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 6 FTNRHEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp EECBSSEEEEETTSCCCEEEE-C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred EECCCeEEEEECCCcceEehh-c-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 344467899999887655333 2 345689999998766665554 568999999875 122222 322234568899
Q ss_pred EccCCCEEEEE-C--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeEEe
Q 008058 167 VSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 167 ~~p~g~~l~~~-~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-~~i~vwd~~~~~~~~~~~~~~ 242 (579)
+++.+..|+.+ . +.|.+++.........+.........++++|.+..++.+.... +.|...++...... ..
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----~~- 158 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----SL- 158 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE----EE-
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE----EE-
Confidence 99755555544 3 7999999875433323333345678999999777666654333 67888887654321 11
Q ss_pred eecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC
Q 008058 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 283 (579)
....-.....++++ +++..|..+. ..+.|..+|.+.
T Consensus 159 ~~~~~~~P~gla~d-----~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 VTENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ECSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCceEEEEe-----ccCCEEEEEECCCCeEEEEecCC
Confidence 11222344566676 7766666665 467899999764
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.11 E-value=0.0021 Score=62.71 Aligned_cols=144 Identities=11% Similarity=-0.035 Sum_probs=89.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~~~~~v 162 (579)
+.+.++-...+.|.+.++...... .+.........+++++|.+..|+.+. .. +.|..+++. |.....+ ...-...
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~P 205 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWP 205 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESCCSSCSCE
T ss_pred CeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCc
Confidence 334444445677888888754432 22223345679999999766666554 34 788888875 4333333 2233467
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
+.|+++|++..|+.+. +.|..+|+........+.........+++. .+ .++.+....+.|..++..+++
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence 8999999777777665 789999987543333333334556778883 44 444444467788888865554
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.00082 Score=67.74 Aligned_cols=148 Identities=13% Similarity=0.122 Sum_probs=85.9
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++++| ++..|..+...+.|+.+|..++....... ... ....++|.+. ++.
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~------------------~P~~ia~d~~---------G~~ 192 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLS------------------KVRTICWTHE---------ADS 192 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCS------------------CEEEEEECTT---------SSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCC------------------CcceEEEeCC---------CCE
Confidence 458998 45556666555789999988766544332 111 1123344332 554
Q ss_pred EEEEECC-C----eEEEEEccCCeE-EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-CCC
Q 008058 89 LVLGTGG-G----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK 160 (579)
Q Consensus 89 l~~~~~~-g----~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~ 160 (579)
|+++... + .+..++....-. ...+. ......+++++| +|..+++-..++.|+.+|...+.....+.. ...
T Consensus 193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 5555542 2 244444332211 01111 123457788999 666555555778999999876654222222 223
Q ss_pred CeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008058 161 GISCMAVSSDGKMLATAA---GQLKTFNCS 187 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---g~i~vwd~~ 187 (579)
....++|+|+|++|+.+. +.|..++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 578999999999666654 789998765
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.01 E-value=0.0035 Score=57.68 Aligned_cols=189 Identities=7% Similarity=0.056 Sum_probs=113.0
Q ss_pred EEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
++|+|+++.|+ +...++.|...|.. ++.+..+.-. +. .....+++... +.++
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g~--~D~EGIa~~~~---------g~~~ 84 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------FV--KDLETIEYIGD---------NQFV 84 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------SC--SSEEEEEECST---------TEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------CC--CChHHeEEeCC---------CEEE
Confidence 49999876555 46678889999987 8877766421 10 12233444321 4444
Q ss_pred EEEECCCeEEEEEccCCeE---EEEec-----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEee--
Q 008058 90 VLGTGGGDVLALAVSAGQL---KWRLS-----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFR-- 156 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~---~~~~~-----~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~-- 156 (579)
++.-.++.+.++++..... +.... .......-+++|+|+++.|+++.......+|.+. ....+..+.
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 4444567788888765432 11111 1234567999999999888877765544454442 111222221
Q ss_pred -----cCCCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEeecCC---------CCEEEEEEecCCCEEEEEec
Q 008058 157 -----ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 157 -----~~~~~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~l~s~s~ 219 (579)
.+...+.+++++|.... ++... +.+.++|.+ ++.+..+.-.. ...-.|+|.++|+.+++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E-
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c-
Confidence 12236789999996544 44444 789999965 55554443211 25678999999985554 5
Q ss_pred CCCeEEEEEc
Q 008058 220 GERYIALWRT 229 (579)
Q Consensus 220 ~d~~i~vwd~ 229 (579)
+-+.++.+.-
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 5666666643
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.99 E-value=0.0067 Score=58.01 Aligned_cols=204 Identities=13% Similarity=0.194 Sum_probs=118.9
Q ss_pred ceEEeee-cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC----CC---EEEEEe-C--
Q 008058 69 TCMKWLS-VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GS---CIYSAG-A-- 137 (579)
Q Consensus 69 ~~~~w~~-~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~----~~---~l~s~~-~-- 137 (579)
....|.. .++. ..+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. .
T Consensus 28 dpavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~ 97 (355)
T 3amr_A 28 DPAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEG 97 (355)
T ss_dssp EEEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred CccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence 3467774 3443 455666667788999999 7887766632 56777776662 22 223333 3
Q ss_pred CCcEEEEeC--CCCceeeEeec------CC-CCeeEEEE--ccC-CC-EEEEEC--CeEEEEECC-------CCeeeEEe
Q 008058 138 DGMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNCS-------DHKKMQKF 195 (579)
Q Consensus 138 dg~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--~p~-g~-~l~~~~--g~i~vwd~~-------~~~~~~~~ 195 (579)
+++|.+|++ .++. +..+.. .. ..+..+|+ +|. ++ ++++.. |.+..|++. +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999966 3443 444421 11 45677787 774 54 344444 888888872 34667887
Q ss_pred ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee--cCceeeEeEEecCCcccCCCc-EEEEEEc
Q 008058 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGL-YVLAISE 272 (579)
Q Consensus 196 ~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~s~~~ 272 (579)
.- .+.+-.|...+....|+.+- ++.-|..++.+.........+.... +-...+..+..-. .++++ +|++++.
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQ 251 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQ 251 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEG
T ss_pred cC-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcC
Confidence 64 45788999998888888875 6765555554432211111222222 1111223333310 04455 6777774
Q ss_pred -CCeEEEEECC-Cceeec
Q 008058 273 -TGVCYIWYGQ-NIEELR 288 (579)
Q Consensus 273 -dg~i~iwd~~-~~~~~~ 288 (579)
+++..+||.+ +.+.+.
T Consensus 252 G~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 252 GNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp GGTEEEEEESSTTCCEEE
T ss_pred CCCEEEEEECCCCCcEEE
Confidence 7799999986 444433
No 277
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.98 E-value=0.0012 Score=63.20 Aligned_cols=189 Identities=13% Similarity=0.226 Sum_probs=117.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC--
Q 008058 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (579)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-- 94 (579)
..+++....++-+.|||+ +|+.++.+.. +..+++-..+.+ ....+ .-.++++...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~---------------~l~g~-----~~dla~as~R~~ 96 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDF---------------PLNGK-----KVDIAAASNRSE 96 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEE---------------EETTE-----EEEEEEEEECST
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccc---------------ccCCc-----eEeEEEEeCCCC
Confidence 345555566788999999 7888887753 222222222110 00000 0112333333
Q ss_pred -CCeEEEEEc--cCCeEEEEecC---C--CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceeeE
Q 008058 95 -GGDVLALAV--SAGQLKWRLSD---C--HP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLGK 154 (579)
Q Consensus 95 -~g~i~iwd~--~~~~~~~~~~~---~--h~-~~V~~l~~--~~~-~~-~l~s~~~dg~v~iwd~~-------~~~~~~~ 154 (579)
+++|.+|++ .++. +..+.. . .. ..+..+|+ +|. ++ +++....+|.+..|++. +++.+++
T Consensus 97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 467999976 4444 323311 0 11 55777888 774 44 57888889999999883 3466777
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-----CCeeeEEee-cC-CCCEEEEEEe--cCCC-EEEEEecCCC
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGER 222 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~-----~~~~~~~~~-~h-~~~v~~l~~~--~~~~-~l~s~s~~d~ 222 (579)
|.. ...+..+...+....|+.+. .-|..|+.+ +++.+..+. ++ ...+..|++. ++++ ||++++..++
T Consensus 176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 774 45788999998888888887 347777755 345565542 22 2468888884 5555 7777776788
Q ss_pred eEEEEEcC
Q 008058 223 YIALWRTD 230 (579)
Q Consensus 223 ~i~vwd~~ 230 (579)
+..+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999986
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.0027 Score=63.97 Aligned_cols=189 Identities=12% Similarity=0.110 Sum_probs=105.3
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058 10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++|+|+ +..|..+...+.|+.+|..++....... ..... ..+++.+. +.
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P------------------~giavd~d---------G~ 194 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQC------------------ADVNFTLN---------GD 194 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCE------------------EEEEECTT---------CC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCc------------------cEEEECCC---------CC
Confidence 4599985 4445555444899999998887654332 11111 23333332 55
Q ss_pred EEEEEECCC----e-EEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-ecC-C
Q 008058 88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAS-T 159 (579)
Q Consensus 88 ~l~~~~~~g----~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-~ 159 (579)
|+++...+ . +...+...+....... .......+++++| +|..+++-..++.|+.+|..++.....+ ... .
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444322 1 3333332221100010 1223456788999 6655555556788999998877653332 211 2
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeecC---------------CCCEEEEEE---------e
Q 008058 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S 208 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------~ 208 (579)
.....++|+|+|+.|+.+. +.|+.++.. ++.. ...+.+. -.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 2335799999999666655 789998865 3321 1223221 123567898 6
Q ss_pred cCCCEEEEEecCCCeEEEEEc
Q 008058 209 DNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 209 ~~~~~l~s~s~~d~~i~vwd~ 229 (579)
++|..+++- ...+.|+.++.
T Consensus 353 ~~g~lyvaD-~~n~~I~~~~~ 372 (433)
T 4hw6_A 353 DEYDFYFCD-RDSHTVRVLTP 372 (433)
T ss_dssp CCEEEEEEE-TTTTEEEEECT
T ss_pred CCCcEEEEE-CCCCEEEEECC
Confidence 666555544 36778888875
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0037 Score=62.91 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=92.3
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C----cEEEEeCCCCcee--eEeecCC
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST 159 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g----~v~iwd~~~~~~~--~~~~~~~ 159 (579)
..|+++...+.|+.+|+.++...... . .......++|+++|++|+.+... + .+..++. .+... ..+.. .
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~-~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~ 225 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVY-S-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-G 225 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEE-C-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-C
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEe-c-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-C
Confidence 44666666678999999887764333 2 44568999999999977666542 2 3444443 33222 23322 3
Q ss_pred CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.....++++| +|.++++-. +.|+.|+..++.....+. +.......++|+|+|++|+.+....+.|..++...
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 3457889999 666665543 899999998775422222 12234678999999997666655688999988764
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.90 E-value=0.0087 Score=64.80 Aligned_cols=191 Identities=8% Similarity=-0.061 Sum_probs=111.9
Q ss_pred cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058 87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.++++-...+.|+.+++.... ....+.........+|++.+.++.|+.+ ...+.|.+.++........+.......
T Consensus 437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P 516 (791)
T 3m0c_C 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 516 (791)
T ss_dssp EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCc
Confidence 334444455678888876521 1112223234567789999877666555 467889999986443333333344468
Q ss_pred eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
..|+++|.+..|+.+. +.|...++........+...-.....|++++.+..|+.+-...+.|...++......
T Consensus 517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--- 593 (791)
T 3m0c_C 517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--- 593 (791)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---
T ss_pred ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE---
Confidence 9999999765555544 578888886544333333344678899999877777776556778999998765432
Q ss_pred eEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
.+.... .-...+.+..+ .+..+++-...+.|...|..+++.+
T Consensus 594 ~v~~~~~~l~~P~glav~-------~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 594 TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEECTTTTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEecCCCccCCCCEEEEe-------CCEEEEEECCCCEEEEEeCCCCcce
Confidence 222111 11222333322 2233334345678888887666543
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.90 E-value=0.0006 Score=74.21 Aligned_cols=183 Identities=10% Similarity=0.089 Sum_probs=104.4
Q ss_pred CcEEEEEEC-CC----eEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce--e
Q 008058 86 SSLLVLGTG-GG----DVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL--L 152 (579)
Q Consensus 86 ~~~l~~~~~-~g----~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~--~ 152 (579)
++.|+.+.. +| .|+++|+.++ +.+.... .....++.|+|||+.|+....| ..|+.+++.++.. .
T Consensus 186 G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~ 262 (751)
T 2xe4_A 186 HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV 262 (751)
T ss_dssp TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE
T ss_pred CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE
Confidence 666665543 33 3999999998 6321111 1113467899999988777665 3688889877642 2
Q ss_pred eEeec-CCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCe-ee--EEe-ecCCCCEEEEEEecCCCEEEEEecCC-
Q 008058 153 GKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK-KM--QKF-SGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (579)
Q Consensus 153 ~~~~~-~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~-~~--~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d- 221 (579)
..+.. .......+.|+|||++|+... ..|+++|+.++. .. ..+ .+......++.|+. |..|+..+..+
T Consensus 263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~ 341 (751)
T 2xe4_A 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG 341 (751)
T ss_dssp EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence 33332 223567889999999888654 479999998752 12 333 33445556666554 45554444333
Q ss_pred ---CeEEEEEcCCCcccccee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe--EEEEEC
Q 008058 222 ---RYIALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWYG 281 (579)
Q Consensus 222 ---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~--i~iwd~ 281 (579)
..|..+++.+.... .. +.. ......+....+. ++..+++...+|. |+++++
T Consensus 342 a~~~~L~~~d~~~~~~~--~~~li~-~~~~~~l~~~~~~------~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 342 AVNHKLLIAPRGQPSDW--SHVLVD-HSEDVFMESIAVR------SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CTTCEEEEEETTSTTCC--CCEEEC-CCSSEEEEEEEEC------SSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEcCCCcccc--eeeEEC-CCCCcEEEEEEEE------CCEEEEEEEeCCEEEEEEEec
Confidence 35777776542111 11 111 1222233333332 3455666677885 555564
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.88 E-value=0.0069 Score=58.15 Aligned_cols=145 Identities=10% Similarity=-0.038 Sum_probs=91.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEe-ecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (579)
+.+.++-...+.|.++++...... .+.........++++.|.+..|+.+. ..+.|...++. |.....+ ...-...
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~P 168 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWP 168 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCc
Confidence 334444445677888888654332 22223445679999999777776665 25788888875 4333333 2223467
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
+.|+++|++..|+.+. +.|..+|+........+.+.......+++..+ .++.+....+.|..++..+++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence 8999999777777765 79999998743322222333455677777533 3444444678899998876653
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.86 E-value=0.0083 Score=59.70 Aligned_cols=145 Identities=8% Similarity=-0.077 Sum_probs=90.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCe
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (579)
+.+.++-...+.|.+.++........+ ........++++.|.+.+|+.+.. .+.|...++. |.....+ ...-...
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWP 248 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEECSSCSCE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEEECCCCce
Confidence 344444445677888888765443222 233456899999997777666652 3789999975 4333333 3333577
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
+.|+++|++..|+.+. +.|..+|+........... .......+++. +..++.+....+.|..++..+++.
T Consensus 249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence 9999999888777776 7899999865433222222 23345567763 334444433567888888666653
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.84 E-value=0.0043 Score=58.79 Aligned_cols=152 Identities=9% Similarity=0.039 Sum_probs=102.3
Q ss_pred ceEEeeecccccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCC----CC--CCEEEEEE---ccCCCEEEEEe--
Q 008058 69 TCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG-- 136 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~----h~--~~V~~l~~---~~~~~~l~s~~-- 136 (579)
.+..|... ...+.+++ ..|.|..||...+........+ .. ..+.++.| .|+++++++..
T Consensus 16 E~~~wd~~---------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 16 EDTIYDRT---------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp SCEEEETT---------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCccCcCC---------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 46777665 33455555 7899999999866543333222 11 14689999 68877776543
Q ss_pred -----------CCCcEEEEeCC---CCceeeEeec-------------CCCCeeEEEEccCCCEEEEEC---CeEEEEEC
Q 008058 137 -----------ADGMVCEIDPL---TGSLLGKFRA-------------STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (579)
Q Consensus 137 -----------~dg~v~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~ 186 (579)
.+..|..||+. +++.+....- .......++..++|+..++++ +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26779999998 7877655431 112478999999999999876 45666555
Q ss_pred CCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 187 SDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 187 ~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
.. +.+..+.. .....+.|+++|+|..|++... ++.+..+|+..
T Consensus 167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 43 33333311 1123679999999999998875 89999999884
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.84 E-value=0.00038 Score=74.60 Aligned_cols=227 Identities=5% Similarity=-0.077 Sum_probs=122.8
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+++.++|+.++.|+. ++.+.+||..+++....-. .. ...........+ ++.++
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~----------------~~R~~~s~~~~~---------dg~iy 301 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQ----------------VARGYQSSATMS---------DGRVF 301 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-CS----------------SCCSSCEEEECT---------TSCEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-CC----------------ccccccceEEec---------CCeEE
Confidence 577889999999984 5689999998775432110 00 001111111111 16777
Q ss_pred EEEE-CC-----CeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCc
Q 008058 90 VLGT-GG-----GDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPLTGS 150 (579)
Q Consensus 90 ~~~~-~~-----g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d---------g~v~iwd~~~~~ 150 (579)
++|+ .+ .++.+||+.+++....- ....... ....+..++..++.++.+ ..+..||..+..
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence 7777 34 45999999988764320 0000000 001122345555555444 356788887765
Q ss_pred eeeEeecCC---------CCeeEEEEcc-CCCEEEEEC--C-----------eEEEEECCCCeeeEEe--ecCCCC-EEE
Q 008058 151 LLGKFRAST---------KGISCMAVSS-DGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGA-VRF 204 (579)
Q Consensus 151 ~~~~~~~~~---------~~v~~l~~~p-~g~~l~~~~--g-----------~i~vwd~~~~~~~~~~--~~h~~~-v~~ 204 (579)
.......+. ..-.++.+.. ++++++.|+ + .|.+||..+.+..... ..+... -.+
T Consensus 381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 460 (656)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence 333222111 1223444433 677777776 1 6888888776544332 112222 234
Q ss_pred EEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 205 MTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 205 l~~~~~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
+...|+++.++.+|..+ ..+.+||..+.+-. .+..+..+.....+.... |+|+.++.|+.
T Consensus 461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG~ 530 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEECC
T ss_pred eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCCC
Confidence 56678999988887421 46899998775422 111222222222333443 78999998885
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.82 E-value=0.0031 Score=63.52 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=88.7
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCce-eeEeecCCC
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK 160 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~-~~~~~~~~~ 160 (579)
..|+++...+.|+.+|+.++...... .......+++|+++|+ |+.+...+ .+...+...+.. ...+. ...
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~ 228 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR 228 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence 44666655588999999888775332 2445689999999999 55554322 233344322211 01222 234
Q ss_pred CeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEe-ec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-SG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 161 ~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
....++++| +|.++++-. +.|+.+|..++.....+ .. ....-..++|+|++++|+.+....+.|..++...
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 557789999 666555543 78999999877653333 21 1222346999999997766665678999988763
No 287
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.0052 Score=67.24 Aligned_cols=243 Identities=9% Similarity=0.068 Sum_probs=140.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++..+++|. |-.|+.++-|..|+..++.... +........ . .+-....+.++.-.. ...
T Consensus 316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~------~--~~l~~~~v~~i~~d~----------~g~ 375 (781)
T 3v9f_A 316 RYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMN------E--SSLSNKVVSSVCDDG----------QGK 375 (781)
T ss_dssp EEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCC------S--SCCSSSCEEEEEECT----------TSC
T ss_pred EEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccc------c--CCCCCcceEEEEEcC----------CCC
Confidence 4447777776 4456656668888876554322 210000000 0 000011222222211 234
Q ss_pred EEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCCee
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKGIS 163 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~ 163 (579)
|.+|+.++-|..||..++....-. .......|.++...++|. |..|+.++-+..+|..+++.. .+.. ....|.
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVR 453 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEE
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEE
Confidence 778887778999998766543110 012346799999888776 555666677999998776543 3321 345799
Q ss_pred EEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC-----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058 164 CMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~ 238 (579)
++...++|.+.+...+-|..||..+++........ ...|.++...++|...+.+. .+| +..|+..+++..
T Consensus 454 ~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~G-l~~~~~~~~~~~--- 528 (781)
T 3v9f_A 454 VFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-GGG-VGIYTPDMQLVR--- 528 (781)
T ss_dssp EEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-SSC-EEEECTTCCEEE---
T ss_pred EEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-CCC-EEEEeCCCCeEE---
Confidence 99999888876666677999998876543322222 35789999999998666542 244 777887665422
Q ss_pred eEEee--ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 239 CVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 239 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.+.. ..+...+.++..+ ++|.. ..++.+|.+..||.++++
T Consensus 529 -~~~~~~~l~~~~i~~i~~d-----~~g~l-Wi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 529 -KFNQYEGFCSNTINQIYRS-----SKGQM-WLATGEGLVCFPSARNFD 570 (781)
T ss_dssp -EECTTTTCSCSCEEEEEEC-----TTSCE-EEEETTEEEEESCTTTCC
T ss_pred -EccCCCCCCCCeeEEEEEC-----CCCCE-EEEECCCceEEECCCCCc
Confidence 1111 1122344555554 56664 445556665888877654
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.71 E-value=0.00018 Score=77.35 Aligned_cols=192 Identities=8% Similarity=-0.044 Sum_probs=107.4
Q ss_pred EEEEE-ECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058 88 LLVLG-TGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 88 ~l~~~-~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.|+.+ ...+.|+.+++.. .... .+.........++++.+.+..|+ +-...+.|.++++........+......
T Consensus 419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~ 497 (699)
T 1n7d_A 419 RIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK 497 (699)
T ss_dssp EEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC
T ss_pred eEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC
Confidence 34444 3456788888875 2211 12111223456788886555544 4446788999998654433333322345
Q ss_pred eeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~ 237 (579)
...|+++|.+..|+.+. +.|..+++........+...-...+.|+|+|++..|+.+-...+.|.++++......
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-- 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-- 575 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--
Confidence 68899999766555544 578877765432222222223446789999987666666556788999998754322
Q ss_pred eeEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.+..... ...... +.+. . +..+++....+.|..++..+++.+..+
T Consensus 576 -~~~~~~~~~~~P~g-lavd-----~-~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 576 -TILEDEKRLAHPFS-LAVF-----E-DKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp -EECCCSSSCSSCCC-CEEE-----T-TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred -EEEecCCcCCCceE-eEEE-----C-CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 1211111 111122 2222 2 244444455789999998888766544
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.68 E-value=0.013 Score=63.45 Aligned_cols=143 Identities=8% Similarity=-0.074 Sum_probs=89.6
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS 163 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v~ 163 (579)
.++++-...+.|.+.++...... .+.........+|++.|.+.+|+.+.. .+.|...++. |.....+ ...-....
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN 561 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCce
Confidence 44444455677888888755433 232334456899999998777766653 2679999985 4444443 33335789
Q ss_pred EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.|++++.+..|+.+. +.|..+++........+... -....+|++. +.+|+.+-...+.|...+..+++
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 999998777777765 68999998654433333322 2234466653 33555554456777777766664
No 290
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.67 E-value=0.006 Score=57.99 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=93.1
Q ss_pred CcEEEEEECC-----CeEEEEEccCCe---EEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~ 151 (579)
+.+++.|+.+ .++.+||+.+++ ...... .........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 5566666654 359999998876 432211 111111222222 56666666643 3588999877653
Q ss_pred eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC
Q 008058 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
... +....... +++. -++++++.|+ ..+.+||..+.+-... +....... ++.. -+++.++.+|..
T Consensus 141 ~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~ 216 (301)
T 2vpj_A 141 SMLGDMQTAREGA-GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGGFD 216 (301)
T ss_dssp EEEEECSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBC
T ss_pred EECCCCCCCcccc-eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeCCC
Confidence 322 22111122 2222 2677777775 4689999988754322 11111111 2222 256666666532
Q ss_pred ----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058 221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 284 (579)
-..+.+||+.+.+-. .+..+..+.....++. -+++.++.|+.+ ..+.+||.++.
T Consensus 217 ~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 246889998876522 1212222222222222 255666666654 35677777654
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.012 Score=59.69 Aligned_cols=151 Identities=12% Similarity=0.182 Sum_probs=84.9
Q ss_pred EEEEcc-CCCEEEEE-eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEe-------eeccccc
Q 008058 10 LTSFSP-ALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK 80 (579)
Q Consensus 10 ~~~fs~-dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-------~~~~~~~ 80 (579)
.++|+| ++..|..+ ...+.|++.|..++............ ......++| .+.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~---------------~~~p~~ia~~~~~~~~d~~---- 203 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP---------------TNRIRSIAFNKKIEGYADE---- 203 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS---------------CSBEEEEEECCCBTTTBCT----
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc---------------cCCCcEEEEeecccccCCC----
Confidence 459998 34444444 44567889998887776544321100 001223444 222
Q ss_pred ccccCCcEEEEEECCC-------eEEEEEccC-CeEE-----EEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeC
Q 008058 81 KRKLGSSLLVLGTGGG-------DVLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g-------~i~iwd~~~-~~~~-----~~~~~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~ 146 (579)
+..++++...+ .|.+++... +... ..+. . -....+++++|++..| ++-..++.|+.+|+
T Consensus 204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 55566665554 266665443 2221 1111 1 1234577889955554 45557788999998
Q ss_pred C-------CCce-----------eeE-eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEEC
Q 008058 147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (579)
Q Consensus 147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~ 186 (579)
. ++.. ... +.. .....+.|+|+|+|+.|+.+. +.|+.++.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 7 5543 112 222 223568999999999766654 78888654
No 292
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.015 Score=63.57 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=114.9
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~ 160 (579)
..|.+|+.++-+..+|..+++...... ......|.++...++|. |..|+. +-+..||..+++........ ..
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLEN 495 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccc
Confidence 346778887889999998877642211 11346799999888776 555555 45899998776543332222 35
Q ss_pred CeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~ 235 (579)
.|.++...++|.+.+... +-+..||..+++. ..+.. ....|.++...++|...+++ .+|.+..||..+++..
T Consensus 496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T--~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT--GEGLVCFPSARNFDYQ 572 (781)
T ss_dssp CEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE--TTEEEEESCTTTCCCE
T ss_pred eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE--CCCceEEECCCCCcEE
Confidence 789999999998877775 6688899877653 33321 13568899998998865543 3665588887765422
Q ss_pred cceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.+... -+...+..+..+ ++|... .++.+| |..|+.++.+
T Consensus 573 ----~~~~~~gl~~~~i~~i~~d-----~~g~lW-~~t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 573 ----VFQRKEGLPNTHIRAISED-----KNGNIW-ASTNTG-ISCYITSKKC 613 (781)
T ss_dssp ----EECGGGTCSCCCCCEEEEC-----SSSCEE-EECSSC-EEEEETTTTE
T ss_pred ----EccccCCCCCceEEEEEEC-----CCCCEE-EEcCCc-eEEEECCCCc
Confidence 11111 112233444444 566644 445555 7777776543
No 293
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.65 E-value=0.0089 Score=57.91 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=79.5
Q ss_pred CCeEEEEEccCC--eE--EEEecCCCCCCEEEEEEccCCCEEEEEe-----------------CCCcEEEEeCCCCceee
Q 008058 95 GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 95 ~g~i~iwd~~~~--~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-----------------~dg~v~iwd~~~~~~~~ 153 (579)
+..|.+|++..+ .. +..+....-...+++.+.++|.+.++.. ..|.|+.+|. ++ +.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EE
Confidence 345777776653 22 2233222234689999999998766653 1255666665 33 22
Q ss_pred EeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEec-CCCEEEEEecCC-CeEE
Q 008058 154 KFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAVGE-RYIA 225 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d-~~i~ 225 (579)
.+...-...+.++|+||++.++.+. +.|+.|++.. ++. .+.+ ...+..-.+++.+ +|++.+++. .+ +.|.
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~-~~g~~v~ 292 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH-PNGMRIF 292 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE-SCHHHHH
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec-CCceEEE
Confidence 2222234668999999999888876 7999999863 322 2334 2345667889998 588766554 33 2344
Q ss_pred EEEc
Q 008058 226 LWRT 229 (579)
Q Consensus 226 vwd~ 229 (579)
.|+.
T Consensus 293 ~~~P 296 (355)
T 3sre_A 293 FYDA 296 (355)
T ss_dssp SCCT
T ss_pred EECC
Confidence 4443
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.47 E-value=0.054 Score=52.09 Aligned_cols=154 Identities=10% Similarity=0.162 Sum_probs=89.0
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEE-EeCCCCceeeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008058 114 DCHPGGVSAISFATHGSCIYSAGADGMVCE-IDPLTGSLLGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i-wd~~~~~~~~~~-~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~ 190 (579)
.++...+.++.+.|++.+++.+ .+|.++. +|- .++....+ ......+..+.+.+++++++.+. |.+++.+...++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE
T ss_pred cCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCC
Confidence 3456679999999998877665 4555544 342 12222222 22345788999999999888877 888776533344
Q ss_pred eeEEee-c---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee-ecCceeeEeEEecCCcccCCCc
Q 008058 191 KMQKFS-G---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGL 265 (579)
Q Consensus 191 ~~~~~~-~---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 265 (579)
.-..+. + +...+..+.+.+++..++++ .++.+ .+..+.++.- ..+... ..+.. +..+.+. ++ .
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g--~~g~i-~~S~DgG~tW--~~~~~~~~~~~~-~~~v~~~-----~~-~ 304 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG--GAGAL-LCSQDGGQTW--QQDVDVKKVPSN-FYKILFF-----SP-D 304 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEE--STTCE-EEESSTTSSC--EECGGGTTSSSC-CCEEEEE-----ET-T
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEe--CCCeE-EEeCCCCccc--EEcCccCCCCCC-eEEEEEE-----CC-C
Confidence 332222 1 22358889999888766654 36766 4555555422 111100 01222 3344443 33 4
Q ss_pred EEEEEEcCCeEEEEEC
Q 008058 266 YVLAISETGVCYIWYG 281 (579)
Q Consensus 266 ~l~s~~~dg~i~iwd~ 281 (579)
.+++++.+|.|.-++-
T Consensus 305 ~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 305 QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEECSTTEEEEECC
T ss_pred ceEEEcCCceEEEEcC
Confidence 4667778898877753
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.47 E-value=0.073 Score=56.16 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=109.7
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
.+|+. +....|+..++.+......+....-..+.+++|++.+..|+.+. .++.|+.+++........+.........+
T Consensus 7 ~~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 34444 46788999999876543333222345789999999776666554 67889999986543333333233467889
Q ss_pred EEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCccccceeEE
Q 008058 166 AVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 166 ~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
++++.+..|+.+. +.|.+.++........+...-.....|+++|...+|+.+-. ..+.|...++...... .+.
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l~ 162 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TLV 162 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EEE
Confidence 9998766665554 78999998754322222234455789999996556665531 2457777777655422 111
Q ss_pred eeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECC
Q 008058 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ 282 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~ 282 (579)
..-.....++++ +++..|..+. ..+.|..+|++
T Consensus 163 ---~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 163 ---PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp ---CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETT
T ss_pred ---CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCC
Confidence 122223444454 5444444443 34566666654
No 296
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.46 E-value=0.027 Score=53.48 Aligned_cols=183 Identities=11% Similarity=0.102 Sum_probs=94.1
Q ss_pred CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE
Q 008058 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~ 154 (579)
+.+++.|+.+ .++.+||+.+++....-. .........+.+ +++.++.|+.+ ..+.+||+.+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 5566666644 569999999887542211 111111222223 66667777655 4689999887653222
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEec
Q 008058 155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~-----------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
+....... +++. -++++++.|+ ..+.+||..+.+-... +...... .++... +++.++.+|.
T Consensus 134 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~ 209 (306)
T 3ii7_A 134 PSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFV-KDKIFAVGGQ 209 (306)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCE
T ss_pred CCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEE-CCEEEEEeCC
Confidence 11111111 2222 3677777775 2388999988753322 1111111 122222 5666666553
Q ss_pred CC----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058 220 GE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 220 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 284 (579)
.. ..+.+||+.+.+-. .+..+........++.+ +++.++.|+.+ ..+.+||..+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAAV-------GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEEE-------TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEEE-------CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 11 35888998876422 11122222222222222 55677777654 46777887664
No 297
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.45 E-value=0.03 Score=53.13 Aligned_cols=183 Identities=11% Similarity=0.056 Sum_probs=93.4
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeeE
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~ 154 (579)
+.+++.|+.+ .++.+||+.+++...... .........+.+ +++.++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 5566666644 348999999887542211 111111222223 566777776553 578899877643222
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC-
Q 008058 155 --FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG- 220 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~- 220 (579)
+...... .+++. -++++++.|+ ..+.+||..+.+-... +....... ++.. -+++.++.+|..
T Consensus 140 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 140 APMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDG 215 (302)
T ss_dssp CCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSS
T ss_pred CCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCC
Confidence 1111112 12222 2667777765 2588999987754322 22111111 2222 256666666532
Q ss_pred ---CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (579)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 284 (579)
...+.+||+.+.+-. .+..+........++. .+++.++.|+.++ .+.+||..+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVCA-------VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEe---eCCCCCCccccCeEEE-------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 136889998876422 1112221111112222 2566777776543 4788887655
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.44 E-value=0.069 Score=50.17 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=120.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecCC----C
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (579)
...+++-. ...+.++|+++.+.+.... ...+|.--.|-.+.. |+-.+ +..|+-|++.. ..+++.|.-|. .
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 152 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTC
T ss_pred ccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecchhcccc
Confidence 45566665 6779999999998876653 345788778865544 43332 56799999874 35666666553 3
Q ss_pred CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEec--CCCEEEE-Ee--cCCCeEEE
Q 008058 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--NGKYVLS-SA--VGERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s-~s--~~d~~i~v 226 (579)
.|..-..+++.++++..+ |.+.+|..+.+ .-+.+.||...-..+.+.. ....|++ +. ...+.+++
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhI 231 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 231 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 777888899999887654 68999998765 3445677765443333321 1112222 21 11257889
Q ss_pred EEcCCC---ccc-cceeE---EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 227 WRTDGV---KKQ-SASCV---LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 227 wd~~~~---~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
-++... ... ..+.+ +.-+......-.+..+ +.-..+...+.-|.+++||++++..+...
T Consensus 232 iEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs-----~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 232 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCCCCCCCcccccceeeCCccccCCceEEEEec-----ccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 888543 111 01111 1111223333344444 56678888999999999999999887643
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.41 E-value=0.046 Score=57.63 Aligned_cols=186 Identities=9% Similarity=0.009 Sum_probs=107.5
Q ss_pred EEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008058 88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (579)
Q Consensus 88 ~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (579)
.|+.+. ..+.|..+++........+.........++++.+.++.|+.+ ...+.|.+.++... ....+. ..-.....
T Consensus 53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~ 131 (619)
T 3s94_A 53 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRA 131 (619)
T ss_dssp EEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCC
T ss_pred EEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCce
Confidence 344444 456688888775532112222233568999999966665555 46789999998643 333332 34446789
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 165 l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
|+++|.+..|+.++ +.|...++............-.....|++++++..|+.+-...+.|...++....... ..
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~ 209 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VV 209 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--EE
Confidence 99999755555444 4777777754333222333345678999999877777766567789998887654321 11
Q ss_pred E-eeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceee
Q 008058 241 L-AMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEEL 287 (579)
Q Consensus 241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~ 287 (579)
. .+.++ . .+.+. .+ .|+.+ ...+.|...|..+++..
T Consensus 210 ~~~~~~P---~-gi~~~-----~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 210 KGSLPHP---F-ALTLF-----ED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ------C---C-CEEES-----SS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred eCCCCCc---e-EEEEe-----CC--EEEEecCCCCEEEEEECCCCccc
Confidence 1 12222 1 22232 23 44444 45778999998777543
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.38 E-value=0.01 Score=56.23 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=101.4
Q ss_pred EEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeE-eec----CC--CCeeEEEE---ccCCCEEEEEC----------
Q 008058 120 VSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK-FRA----ST--KGISCMAV---SSDGKMLATAA---------- 178 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~-~~~----~~--~~v~~l~~---~p~g~~l~~~~---------- 178 (579)
--++.|++....|+.++ ..++|..||...+..... +.. .. ..+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45678988666777776 789999999876644333 221 01 14689999 68888887522
Q ss_pred -----CeEEEEECC---CCeeeEEee--c-----------CCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCcccc
Q 008058 179 -----GQLKTFNCS---DHKKMQKFS--G-----------HPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQS 236 (579)
Q Consensus 179 -----g~i~vwd~~---~~~~~~~~~--~-----------h~~~v~~l~~~~~~~~l~s~s~~d-~~i~vwd~~~~~~~~ 236 (579)
+.+..||+. +++.+.... . -......++..++|+..++.+. - +.|...+..... .
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~pdG~~-~- 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSADGKT-V- 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECTTSCC-E-
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeCCCCE-E-
Confidence 469999999 777655442 1 1134789999999998887774 5 666666555432 1
Q ss_pred ceeEEeeec----CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 237 ASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
..+.... ...-.+.+.+. |+|..|++....|.|..||+.
T Consensus 172 --~~~~~~~~~~~~~~G~nGIv~~-----pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 172 --STFAWESGNGGQRPGYSGITFD-----PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp --EEEEECCCCSSSCCSCSEEEEE-----TTTTEEEEESSSSSEEEEECS
T ss_pred --eeeeecCCCcccccCcceEEEe-----CCCCEEEEEcCCCeEEEEcCC
Confidence 1121111 11123455666 999998888779999999987
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.35 E-value=0.057 Score=52.23 Aligned_cols=176 Identities=11% Similarity=0.113 Sum_probs=100.9
Q ss_pred CCCeEEEEEccCC--eEE-EEecC----CCCCCEEEEEEcc--CCC-EEEEEe-C--CCcEEEEeCCCC-c---eeeEee
Q 008058 94 GGGDVLALAVSAG--QLK-WRLSD----CHPGGVSAISFAT--HGS-CIYSAG-A--DGMVCEIDPLTG-S---LLGKFR 156 (579)
Q Consensus 94 ~~g~i~iwd~~~~--~~~-~~~~~----~h~~~V~~l~~~~--~~~-~l~s~~-~--dg~v~iwd~~~~-~---~~~~~~ 156 (579)
.+|.|.++|+.+. +.. ..+.. .......++.+.+ +|. +|+.+. . +.+|.+|++..+ . .+.++.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999999742 321 12211 1234678888876 454 455553 2 457778776543 2 233344
Q ss_pred cCC-CCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008058 157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 157 ~~~-~~v~~l~~~p~g~~l~~~~-------------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 216 (579)
+.. ...+.+.+.++|.+.++.. |.|+-+|. ++ +..+...-...+.++|+||++.++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 322 3688999999999887753 23444444 33 2223223345789999999998888
Q ss_pred EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEEcC-CeEEEEE
Q 008058 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISET-GVCYIWY 280 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d-g~i~iwd 280 (579)
+.+..+.|..|++...........+. .......++.+ + +|.+.+++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD-----~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVD-----PVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEEC-----TTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEe-----CCCCcEEEEecCCceEEEEEC
Confidence 77678899999987432221111221 12344555555 6 46666555433 2444343
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.31 E-value=0.23 Score=52.29 Aligned_cols=186 Identities=5% Similarity=-0.053 Sum_probs=112.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++.+-..++.|..+++........+ ........++++.+.++.|+.+ ...+.|.+.++........+...-.....
T Consensus 49 ~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~ 127 (628)
T 4a0p_A 49 NRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA 127 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCccc
Confidence 334444455677888888765433222 2222457789998776666555 45678999998644322223233446799
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 165 l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
|+++|....|+.+. +.|...++..... ..+...-.....|++++++..|+.+-...+.|..+++...... .
T Consensus 128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v- 202 (628)
T 4a0p_A 128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---V- 202 (628)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E-
T ss_pred EEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---E-
Confidence 99998544454443 5788888765433 3333345567899999987777777667789999999765421 1
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 285 (579)
.. ........ +++. .+...++-...+.|...|..+++
T Consensus 203 ~~-~~l~~P~g-lav~------~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 203 IA-DDLPHPFG-LTQY------QDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EE-ECCSCEEE-EEEE------TTEEEEEETTTTEEEEEETTTCC
T ss_pred ee-ccCCCceE-EEEE------CCEEEEecCCCCEEEEEECCCCC
Confidence 11 12222233 3332 23444444447888888876664
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.29 E-value=0.00091 Score=71.85 Aligned_cols=143 Identities=8% Similarity=-0.064 Sum_probs=83.8
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS 163 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v~ 163 (579)
.++++-...+.|.++++...... .+.........++++.|.+.+|+.+.. .+.|..+++. |.....+ ...-...+
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN 543 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSCSSCC
T ss_pred cEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCCCCcc
Confidence 33444445677888888765443 232223345678899997666665543 2678888875 3333332 22233567
Q ss_pred EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.|+|+|++..|+.+. +.|..+++........+. ........|++..+ .++.+....+.|..++..+++
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence 899999876666655 689999986533222222 11223345566543 444444456788888876664
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.28 E-value=0.042 Score=53.70 Aligned_cols=148 Identities=13% Similarity=0.190 Sum_probs=95.0
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe----------
Q 008058 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK---------- 190 (579)
Q Consensus 126 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~---------- 190 (579)
..+|..++.+ .++.||.-++......+.++.. -..+..+..+|+|++||..+ ..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 3355555555 3567777777644444455443 22678899999999999988 899999887321
Q ss_pred --eeEEeec------CCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccc-----eeEEeeecCceeeEeEE
Q 008058 191 --KMQKFSG------HPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRC 254 (579)
Q Consensus 191 --~~~~~~~------h~~~v~~l~~~~~---~~~l~s~s~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 254 (579)
..+.+.- ...+|..+.|||- +..|++-. .|+.|++||+........ ...+........+...+
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 1223321 2577999999995 45777776 699999999987432211 01112222234566777
Q ss_pred ecCCcccCCCcEEEEEE--cCCeEEEEE
Q 008058 255 IDNGGVDDAGLYVLAIS--ETGVCYIWY 280 (579)
Q Consensus 255 ~~~~~~~~~~~~l~s~~--~dg~i~iwd 280 (579)
|. ++|-.|...+ .+|.|+-.-
T Consensus 187 Fg-----~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 187 FS-----KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EC-----TTSSCEEEEECTTSCEEEEES
T ss_pred Ec-----CCCcEEEEEecCCCCCEEEEC
Confidence 87 5666666655 778877654
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.26 E-value=0.16 Score=49.81 Aligned_cols=194 Identities=12% Similarity=0.101 Sum_probs=121.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecCC----C
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (579)
...+++-. ...+.++|+.+.+.+.... ...+|.--.|-.+. .|+-. .+..|+-|++.. ..+++.|.-|. .
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccc
Confidence 34455554 7789999999998876653 23456666675444 44444 356799999864 35666666553 3
Q ss_pred CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEEEecC---CCeEEE
Q 008058 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG---ERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~---d~~i~v 226 (579)
.|..-..+++.++++..+ |.+.+|..+.+ .-..+.||...-..+.+..+ ...+++-+.. .+.+++
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 777888899999888654 68999998754 34556778665544443211 1123332212 268999
Q ss_pred EEcCCC-ccc---ccee---EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058 227 WRTDGV-KKQ---SASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 227 wd~~~~-~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 290 (579)
-++... ... ..+. .+.-+......-....+ +.-..+...+.-|.+++||++++..+...
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeeeee
Confidence 988543 100 0001 11111223344444454 66678889999999999999999887643
No 306
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.21 E-value=0.038 Score=52.58 Aligned_cols=183 Identities=7% Similarity=-0.001 Sum_probs=91.4
Q ss_pred CcEEEEEEC----C-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008058 86 SSLLVLGTG----G-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~----~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~ 150 (579)
+.+++.|+. + ..+.+||+.+++...... .........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 455566554 2 458999998887542211 111111222233 56666666533 468899987764
Q ss_pred eeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEec
Q 008058 151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 151 ~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
-... +........++.+ ++++++.|+ +.+.+||..+.+-.. .+....... ++... +++.++.+|.
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~ 224 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGY 224 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCB
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCC
Confidence 3221 1111112222222 677777775 368999998765322 111111111 22222 5666666653
Q ss_pred C----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058 220 G----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 220 ~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 284 (579)
. -..+.+||+.+.+-. .+..+........++.. +++.++.|+.+ ..+.+||..+.
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWT---FVAPMKHRRSALGITVH-------QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCccceEEEEeCCCCcEE---ECCCCCCCccceEEEEE-------CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 146889998876422 11122222111222222 45666666643 35677777654
No 307
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.16 E-value=0.086 Score=50.25 Aligned_cols=141 Identities=9% Similarity=0.030 Sum_probs=72.6
Q ss_pred CcEEEEEEC-----C------CeEEEEEccCCeEEEEecCCCCC--CEEEEEEccCCCEEEEEeCC--------CcEEEE
Q 008058 86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGAD--------GMVCEI 144 (579)
Q Consensus 86 ~~~l~~~~~-----~------g~i~iwd~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~d--------g~v~iw 144 (579)
+.+++.|+. . ..+..||+.+++... +...... ....+.+ +++.++.|+.+ ..+.+|
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEE
Confidence 566677763 1 128889998887532 1111111 1112222 56666666632 458999
Q ss_pred eCCCCceee--EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCC
Q 008058 145 DPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 145 d~~~~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~ 212 (579)
|+.+.+-.. .+...... .+++. -++++++.|+ +.+.+||..+.+-.. .+...... .+++. -+++
T Consensus 123 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~ 198 (315)
T 4asc_A 123 DRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATV-HDGR 198 (315)
T ss_dssp ETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTE
T ss_pred CCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEE-ECCE
Confidence 988764222 11111111 12222 4667777765 369999998764322 11111111 12222 2566
Q ss_pred EEEEEecCCC----eEEEEEcCCCc
Q 008058 213 YVLSSAVGER----YIALWRTDGVK 233 (579)
Q Consensus 213 ~l~s~s~~d~----~i~vwd~~~~~ 233 (579)
.++.+|..+. .+.+||+.+.+
T Consensus 199 iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 199 IIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEeccCCCCccceEEEEECCCCe
Confidence 7777764322 57888887764
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.16 E-value=0.051 Score=57.27 Aligned_cols=195 Identities=10% Similarity=-0.058 Sum_probs=107.6
Q ss_pred eEEEEccCCCEEEEEeC-CCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058 9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
+.++|++.+..|..+.. .+.|..++...... ...+...-.. ...++..... +
T Consensus 43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~------------------P~GlAvD~~~--------~ 96 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS------------------PDGLACDWLG--------E 96 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSC------------------EEEEEEETTT--------T
T ss_pred EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCC------------------cCeEEEEecC--------C
Confidence 45688887766665553 56777777764421 1112110001 1122222211 3
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS 163 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v~ 163 (579)
.+.++-...+.|.+.++...... .+....-....++++.|.+.+|+.+.. .+.|...++. |.....+ ...-...+
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEE-EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 34444455677999988765432 222234456789999997666666653 4677777765 4433333 22344679
Q ss_pred EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
.|++++++..|+.+. +.|..+|+..........+.......|++..+ .++.+-...+.|...|..+++
T Consensus 175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred EEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 999999877777766 78999998754432222212222345666554 555554456788888877664
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.14 E-value=0.18 Score=48.89 Aligned_cols=198 Identities=10% Similarity=0.131 Sum_probs=95.5
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|.|||++++ +..+|.|++++ ++... .+.... + +.. + ......+++.+.-.. +..|
T Consensus 35 ~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~-~~~~~~--v----~~~----g--~~~p~gia~~pdf~~------~g~l 92 (352)
T 2ism_A 35 ALAFLPDGGMLI-AERPGRIRLFR--EGRLS-TYAELS--V----YHR----G--ESGLLGLALHPRFPQ------EPYV 92 (352)
T ss_dssp EEEECTTSCEEE-EETTTEEEEEE--TTEEE-EEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCEE
T ss_pred EEEEcCCCeEEE-EeCCCeEEEEE--CCCcc-Eeecce--E----eec----C--CCCceeEEECCCCCC------CCEE
Confidence 569999998555 45679999998 45422 111110 0 000 0 011233444442111 2344
Q ss_pred EEEECC------CeEEEEEccCCe-----EEEE-ec--CCCCCCEEEEEEccCCCEEEEEeC-------------CCcEE
Q 008058 90 VLGTGG------GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMVC 142 (579)
Q Consensus 90 ~~~~~~------g~i~iwd~~~~~-----~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~~~-------------dg~v~ 142 (579)
+++... +.|..|+...+. .+.. +. .+.......++|.|||...++.+. .|.|.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ 172 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL 172 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence 444432 568888876431 1212 21 111112368999999975555432 25666
Q ss_pred EEeCCCC------------ceeeEeecCCCCeeEEEEcc-CCCEEEEEC--CeE------EEEECCCCe-----------
Q 008058 143 EIDPLTG------------SLLGKFRASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK----------- 190 (579)
Q Consensus 143 iwd~~~~------------~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~--g~i------~vwd~~~~~----------- 190 (579)
-+|.... .....+...-.....++|+| +|.++++-. +.+ .+.-+..+.
T Consensus 173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 6765420 11111111112357789999 566555433 231 133222221
Q ss_pred -------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058 191 -------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 191 -------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
++..+.. ......++| .+|..+++. ...+.|...++...
T Consensus 253 ~~~~~~~p~~~~~~-~~ap~G~~~-~~G~l~v~~-~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 253 NDPRYRDPLYFWPQ-GFPPGNLAF-FRGDLYVAG-LRGQALLRLVLEGE 298 (352)
T ss_dssp CCTTSCCCSEECTT-CCCEEEEEE-ETTEEEEEE-TTTTEEEEEEEEEE
T ss_pred CCCCCcCCeEecCC-CCCCcceEE-ECCEEEEEE-CCCCEEEEEEECCC
Confidence 2233322 234567788 466555444 35677777776543
No 310
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.023 Score=57.55 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=90.1
Q ss_pred EEEEEEC-CCeEEEEEccCCeEEEEecCC--CCCCEEEEEE-------ccCCCEEEEEeCCC-------cEEEEeCCC-C
Q 008058 88 LLVLGTG-GGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-G 149 (579)
Q Consensus 88 ~l~~~~~-~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~-------~~~~~~l~s~~~dg-------~v~iwd~~~-~ 149 (579)
.|+++.. .+.|++.|+.++.+......+ .......++| +++|++|+.+...+ .|.+++... +
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G 232 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG 232 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence 3555544 466999999988876433221 2235899999 99999777776554 266776443 2
Q ss_pred cee-----eEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-------CCee-----------eEEe-e-cCCCC
Q 008058 150 SLL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQKF-S-GHPGA 201 (579)
Q Consensus 150 ~~~-----~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~-------~~~~-----------~~~~-~-~h~~~ 201 (579)
... ..+.. ......++++|++..|+.+. +.|+.+|+. ++.. ...+ . +....
T Consensus 233 ~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~ 311 (496)
T 3kya_A 233 TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW 311 (496)
T ss_dssp CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence 221 22222 12446789999655555544 789999987 5543 1222 1 22344
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
...|+|+|+|++|+.+-...+.|+.++...
T Consensus 312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 678999999997666555678898876644
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.09 E-value=0.07 Score=51.27 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=71.9
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCC
Q 008058 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDH 189 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~ 189 (579)
.....+..+.+.++++.+ .++.+|.++..+...|+....+.. ....+.++.+.+++.+++++. |.| .+....+
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG 279 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence 355678999999988755 555788887775333443333321 123588999999888888887 766 4455555
Q ss_pred eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 190 ~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
+.-..+. .+...+..+.|.++++ +++++ .+|.|.-++-
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILLRYVT 320 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEEEECC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEEEEcC
Confidence 5444443 2345678899987665 44555 5887776653
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.99 E-value=0.29 Score=47.48 Aligned_cols=199 Identities=13% Similarity=0.085 Sum_probs=99.2
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|.|||++++ +..+|.|++++ .++. ..+.... + +.. + ......+++.+.-.. +..
T Consensus 32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~ 89 (354)
T 3a9g_A 32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSW 89 (354)
T ss_dssp EEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCE
T ss_pred eEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCE
Confidence 3569999997544 55669999997 3454 2222110 0 000 0 011223444442111 234
Q ss_pred EEEEEC----C----CeEEEEEccCC-------eEEEE-ecCCCCCCEEEEEEccCCCEEEEEeC-------------CC
Q 008058 89 LVLGTG----G----GDVLALAVSAG-------QLKWR-LSDCHPGGVSAISFATHGSCIYSAGA-------------DG 139 (579)
Q Consensus 89 l~~~~~----~----g~i~iwd~~~~-------~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~-------------dg 139 (579)
|+++.. + +.|..|+...+ +.+.. +..+.......+.|.|||.+.++.+. .|
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 444443 2 55777776654 11111 21111112467999999986665432 24
Q ss_pred cEEEEeCCCCce--------eeEe-ecCCCCeeEEEEcc-CCCEEEEECC-----eEEEEECCC----------------
Q 008058 140 MVCEIDPLTGSL--------LGKF-RASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSD---------------- 188 (579)
Q Consensus 140 ~v~iwd~~~~~~--------~~~~-~~~~~~v~~l~~~p-~g~~l~~~~g-----~i~vwd~~~---------------- 188 (579)
.|.-++.. ++. ...+ .++ .....++|+| +|+++++-.+ .|.+..--.
T Consensus 170 ~I~ri~~d-G~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEE-GRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTT-SCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCC-CCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence 56666653 320 1111 222 2357899999 6666665432 344432110
Q ss_pred CeeeEEeecCCCCEEEEEEe-------cCCCEEEEEecCCCeEEEEEcCCC
Q 008058 189 HKKMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~~-------~~~~~l~s~s~~d~~i~vwd~~~~ 232 (579)
..++..+.........+.|. .+|.++++. ...+.|...++...
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN 297 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence 01233331122356788884 467665554 35677888887653
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.95 E-value=0.41 Score=54.24 Aligned_cols=140 Identities=13% Similarity=0.162 Sum_probs=87.0
Q ss_pred CcEEEEEE----------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008058 86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (579)
Q Consensus 86 ~~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (579)
..++++|+ ..|.|++|++..++..........++|++++-- +| +|++| ...+|++|++...+.++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence 57889888 347799999986655433334456889988743 45 45544 357899999976654441
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEE--EECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058 155 FRASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~v--wd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~ 229 (579)
.... ..|..+.....+++++.|+ ..|.+ |+...++....- .-+...++++.|-.++ .++.+ +.+|.+.+...
T Consensus 921 ~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~a-D~~gNl~vl~~ 997 (1158)
T 3ei3_A 921 CNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGA-ENAFNLFVCQK 997 (1158)
T ss_dssp EEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEE-ETTSEEEEEEE
T ss_pred eecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEE-cCCCcEEEEec
Confidence 1112 1233334434578899998 55544 555444433222 2245678888887666 44444 47899998877
Q ss_pred CC
Q 008058 230 DG 231 (579)
Q Consensus 230 ~~ 231 (579)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.14 Score=48.20 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=74.6
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeeE
Q 008058 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 154 (579)
+.+++.|+.+ ..+.+||+.+++....-. .........+.+ +++.++.|+.+ ..+.+||+.+.+-...
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 5556666543 358999998887542211 111111222222 66666776654 4688999877643322
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC--
Q 008058 155 --FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE-- 221 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d-- 221 (579)
+........++. -++++++.|+ ..+.+||..+.+-... +....... ++.. -+++.++.+|..+
T Consensus 191 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~ 266 (301)
T 2vpj_A 191 TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GATV-LRGRLYAIAGYDGNS 266 (301)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSS
T ss_pred CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEEE-ECCEEEEEcCcCCCc
Confidence 111111122222 2567777775 3689999988754322 11111111 2222 3566666665322
Q ss_pred --CeEEEEEcCCCc
Q 008058 222 --RYIALWRTDGVK 233 (579)
Q Consensus 222 --~~i~vwd~~~~~ 233 (579)
..+.+||+.+.+
T Consensus 267 ~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 267 LLSSIECYDPIIDS 280 (301)
T ss_dssp BEEEEEEEETTTTE
T ss_pred ccccEEEEcCCCCe
Confidence 357888887764
No 315
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.78 E-value=0.27 Score=46.83 Aligned_cols=131 Identities=12% Similarity=0.052 Sum_probs=66.7
Q ss_pred EEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCceeeEeecCCCCe-eEEEEc
Q 008058 98 VLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLGKFRASTKGI-SCMAVS 168 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~v-~~l~~~ 168 (579)
+..||+.+++....-. .........+.+ +++.++.|+.+ ..+.+||+.+.+-...-....... .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7889988877642211 111111222223 56667777654 358889987764322211111111 12222
Q ss_pred cCCCEEEEEC--------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCc
Q 008058 169 SDGKMLATAA--------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVK 233 (579)
Q Consensus 169 p~g~~l~~~~--------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d----~~i~vwd~~~~~ 233 (579)
.++++++.|+ +.+.+||..+.+-... +...... .+++. -+++.++.+|..+ ..+.+||+.+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 4677777775 3589999988753322 1111111 12222 2566666666322 247788887764
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.015 Score=55.84 Aligned_cols=116 Identities=15% Similarity=0.193 Sum_probs=73.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccccccCCcEEEEE-ECC
Q 008058 18 DYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGG 95 (579)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~-~~~ 95 (579)
..++.++.||.|.-.|..+|+....++... .+... ...+ ... . ++..++.. +.|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~--~~~~------~~~--------~--------~~~~~vv~p~~d 66 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE--IQEP------SRL--------E--------TYETLIIEPFGD 66 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE--CCCS------CTT--------T--------SSEEEEECCSTT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE--ecCC------ccc--------c--------CCcEEEEEECCC
Confidence 478899999999999999999999887430 00000 0000 000 0 12333343 689
Q ss_pred CeEEEEEccCCeEEEEecCC---CCCCEEE---EEE-----ccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 96 GDVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~---h~~~V~~---l~~-----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
|.|..++..+|.....+... ...++.. ... ...+..+++++.+|.+...|+.+|+.+..+..
T Consensus 67 G~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 67 GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999888665443211 1223332 000 01455789999999999999999999998864
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.013 Score=56.22 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=105.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecC---
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRAS--- 158 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~--- 158 (579)
+..+++++.||.|.-+|..+|+..+++......++....- .+.+..++.+ +.||.++.+|..+|.....+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 5689999999999999999999999885442233332211 0112234444 58999999999888554443321
Q ss_pred -CCCeeE---EEE-c----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC--CC-----EEEEEEe-----cCCCEEE
Q 008058 159 -TKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL 215 (579)
Q Consensus 159 -~~~v~~---l~~-~----p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~--~~-----v~~l~~~-----~~~~~l~ 215 (579)
..++.. ..+ . ..+..+++|+ |.+...|+++|+.+.++.... +. ..+.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 112211 001 0 0344566666 899999999999998886321 11 1111110 1123455
Q ss_pred EEecCCCeEEEEEcCCCccccceeEEe-eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058 216 SSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 216 s~s~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 288 (579)
.+. .+..+.+.+ ++++ . ....+. .......... ...-....++.+ +.++.||.|.-+|..+|+.+.
T Consensus 170 ig~-~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~--~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGK-TIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPL--ALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEE-EEEECEECC-TTSC-C-CCCEEEEEECCTTTHHH--HTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred Eec-ceEEEEEEC-CCCC-e-EEEeccccccccccccc--ccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 554 466666666 3333 1 111000 0000000000 000000134565 457899999999999988765
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.60 E-value=0.25 Score=46.69 Aligned_cols=142 Identities=10% Similarity=0.031 Sum_probs=74.4
Q ss_pred CcEEEEEECC------CeEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCC
Q 008058 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~ 149 (579)
+.++++|+.+ ..+.+||+.+++....-... .......+.+ +++.++.|+. -..+.+||+.+.
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 5566666654 34999999988754221110 1111122222 5666666653 345889998876
Q ss_pred ceeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEe
Q 008058 150 SLLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 150 ~~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
+-... +...... .+++.. ++++++.|+ ..+.+||..+.+-.. .+.........+.+ +++.++.+|
T Consensus 180 ~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 255 (306)
T 3ii7_A 180 TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG 255 (306)
T ss_dssp EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence 43222 1111111 222222 677777776 468999998865322 12211111222222 566666666
Q ss_pred cC----CCeEEEEEcCCCc
Q 008058 219 VG----ERYIALWRTDGVK 233 (579)
Q Consensus 219 ~~----d~~i~vwd~~~~~ 233 (579)
.. -..+.+||+.+.+
T Consensus 256 ~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BCSSSBCCEEEEEETTTTE
T ss_pred cCCCeeeeeEEEEcCCCCe
Confidence 31 1467888887764
No 319
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.53 E-value=0.43 Score=46.18 Aligned_cols=180 Identities=10% Similarity=-0.013 Sum_probs=85.4
Q ss_pred CeEEEEEccCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCC-----------------------------------
Q 008058 96 GDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGAD----------------------------------- 138 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d----------------------------------- 138 (579)
.++.+||+.+++........ ......++. .+++.++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 45999999988764221111 111222233 467777777754
Q ss_pred ----CcEEEEeCCCCceeeE--eecCCCCeeEEEEccCCCEEEEEC--------CeEEEEEC--CCCeee--EEeecCCC
Q 008058 139 ----GMVCEIDPLTGSLLGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNC--SDHKKM--QKFSGHPG 200 (579)
Q Consensus 139 ----g~v~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~--~~~~~~--~~~~~h~~ 200 (579)
..+.+||+.+.+-... +......-.+++.. ++++++.|+ ..+..||+ .+.+-. ..+.....
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~ 242 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG 242 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence 5789999887643222 22111111233333 566777765 35777887 443321 11111111
Q ss_pred CEEEEEEecCCCEEEEEecCC---------------------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCc
Q 008058 201 AVRFMTFSDNGKYVLSSAVGE---------------------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG 259 (579)
Q Consensus 201 ~v~~l~~~~~~~~l~s~s~~d---------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
.....+...+++.++.+|..+ ..+.+||+.+.+-. .+..+..+.....++.
T Consensus 243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~----- 314 (357)
T 2uvk_A 243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---KSGELSQGRAYGVSLP----- 314 (357)
T ss_dssp CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---EEEECSSCCBSSEEEE-----
T ss_pred cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---eCCCCCCCcccceeEE-----
Confidence 111112234566666665211 24778898876522 2223322222222222
Q ss_pred ccCCCcEEEEEEcCC------eEEEEECCCceeec
Q 008058 260 VDDAGLYVLAISETG------VCYIWYGQNIEELR 288 (579)
Q Consensus 260 ~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~ 288 (579)
.+++.++.|+.++ .+.++++++.+.+.
T Consensus 315 --~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 315 --WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp --ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred --eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 3567777777543 35556777665543
No 320
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.52 E-value=1.4 Score=50.02 Aligned_cols=178 Identities=11% Similarity=0.122 Sum_probs=102.5
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEE---ccC-CCEEEEEe----------CCCcEEEEeCCCCceeeEe-ecCCC
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISF---ATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKF-RASTK 160 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~---~~~-~~~l~s~~----------~dg~v~iwd~~~~~~~~~~-~~~~~ 160 (579)
+.|++.|..+.+.+..+.-.....+.+++. ..+ ..+++.|. ..|.|++|++..++..... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 458999999888776554444455666553 322 46777775 3578999998755432221 12356
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
+|++++-- +|+++++.++.|++|++...+.++.-..+-..|..+.....+.+++.+-. -..+.++..+..... . ..
T Consensus 887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~-L-~~ 962 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGN-F-EE 962 (1158)
T ss_dssp CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTE-E-EE
T ss_pred cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCe-E-EE
Confidence 88888755 46666666799999999876544411111112333333334667777653 445555544332211 1 12
Q ss_pred EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
..-+.....+.++.+- +...++.+..+|.+.++..+.
T Consensus 963 ~a~D~~~~~vta~~~l------d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEIL------DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEEEEE------ETTEEEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEEEEE------ccCcEEEEcCCCcEEEEecCC
Confidence 2223333444444442 335778899999999987543
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.51 E-value=0.19 Score=47.41 Aligned_cols=142 Identities=13% Similarity=0.053 Sum_probs=74.0
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCcee
Q 008058 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~~ 152 (579)
+.++++|+.++ ++.+||+.+++....-.... ......+.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 56667776553 48899998887543211111 111122222 56666666542 45889998876432
Q ss_pred eE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC
Q 008058 153 GK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 153 ~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
.. +....... +++. -++++++.|+ +.+.+||..+.+-... +...... .++.. -+++.++.+|...
T Consensus 187 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 187 YIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCA-VNGLLYVVGGDDG 262 (302)
T ss_dssp EECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBCS
T ss_pred ECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEE-ECCEEEEECCcCC
Confidence 22 21111122 2222 2677777775 3799999988754321 1111111 12222 3566666666321
Q ss_pred ----CeEEEEEcCCCc
Q 008058 222 ----RYIALWRTDGVK 233 (579)
Q Consensus 222 ----~~i~vwd~~~~~ 233 (579)
..+.+||+.+.+
T Consensus 263 ~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 263 SCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSBCCCEEEEETTTTE
T ss_pred CcccccEEEEcCCCCe
Confidence 247888887764
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.47 E-value=0.6 Score=43.93 Aligned_cols=234 Identities=11% Similarity=0.121 Sum_probs=136.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
.--+|..+.+|.=. ..++.|+|+++...+..+.-. .. .+-|.-.+ .+.|+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-------------------e~--VvfWkWis--------~~~L~ 121 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------------DD--VTFWKWIS--------LNTVA 121 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-------------------SC--EEEEEECS--------SSEEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-------------------Cc--cEEEEecC--------CCeEE
Confidence 34588888888766 568999999999888766521 12 23333333 33444
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCC
Q 008058 91 LGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~ 159 (579)
..+ +..|+.|++.......+....| ...|..-..+++.++++..+ -.|.+.+|..+. +.-+.+.+|.
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 199 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 199 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee
Confidence 444 4679999997543332332333 35688888899999866544 236788999754 4445677776
Q ss_pred CCeeEEEEccC---CCEEEEEC-----CeEEEEECCCC---e------eeEEeec---CCCCEEEEEEecCCCEEEEEec
Q 008058 160 KGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH---K------KMQKFSG---HPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 160 ~~v~~l~~~p~---g~~l~~~~-----g~i~vwd~~~~---~------~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~ 219 (579)
.....+.+..+ .++++.+. +.+++-++... . .+..+-. ..+-.-++..++.-..++.-+
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT- 278 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT- 278 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE-
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe-
Confidence 54433333211 12344333 58888888432 1 1111111 133355777777766666666
Q ss_pred CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
.-|.+++||+.++... ....+......+. ... ....=++.....|.|.--.++..+.+
T Consensus 279 K~G~ihlyDleTgt~i---~~nrIS~d~iF~t-a~~------~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCI---YMNRISGETIFVT-APH------EATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp TTSEEEEEETTTCCEE---EEEECCSSCEEEE-EEE------GGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCcEEEEEEcccCcEE---EEeccCCCceEEe-ccc------CCCCcEEEEcCCCEEEEEEECcccEe
Confidence 6899999999999744 2222323332222 222 23344556667787776666555444
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.40 E-value=0.42 Score=45.34 Aligned_cols=180 Identities=8% Similarity=0.064 Sum_probs=91.7
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----C-------CcEEEEeCCCCceeeE--e
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-------GMVCEIDPLTGSLLGK--F 155 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d-------g~v~iwd~~~~~~~~~--~ 155 (579)
++.|+ ..+..||+.+++....-...............+++.++.|+. + ..+..||+.+++-... +
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44444 689999999988643222212122233333457777777773 1 1277889877653221 1
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCC--
Q 008058 156 RASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE-- 221 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~----------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~d-- 221 (579)
...... .+++.. ++++++.|+ +.+.+||..+.+-.. .++..... .+++ ..+++.++.+|..+
T Consensus 86 p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 86 PSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDR 161 (315)
T ss_dssp SSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTS
T ss_pred Ccchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCC
Confidence 111111 122222 566666665 358999998865321 12111111 1222 24566666665312
Q ss_pred ---CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058 222 ---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (579)
Q Consensus 222 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 284 (579)
..+.+||+.+.+-. .+..+..+.....++. -+++.++.|+.++ .+.+||..+.
T Consensus 162 ~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWK---ELAPMQTARSLFGATV-------HDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred cccceEEEEeCCCCeEE---ECCCCCCchhceEEEE-------ECCEEEEEeccCCCCccceEEEEECCCC
Confidence 36888998876422 1112222222222222 2567777777654 5778887665
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.19 E-value=0.2 Score=47.49 Aligned_cols=183 Identities=10% Similarity=0.019 Sum_probs=92.1
Q ss_pred CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC----C-----CcEEEEeCCCCce
Q 008058 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~----d-----g~v~iwd~~~~~~ 151 (579)
+.+++.|+.+ ..+.+||+.+++....-. .........+.+ ++..++.|+. + ..+.+||+.+.+-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 5566666642 359999999887642211 000111122222 5666666665 2 4688999877643
Q ss_pred eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008058 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~ 220 (579)
... +........++.+ ++++++.|+ ..+.+||..+.+-.. .+.........+.+ +++.++.+|..
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 221 1111112222222 677777776 468999998765322 12211111122222 56666666532
Q ss_pred ----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058 221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 284 (579)
-..+.+||+.+.+-. .+..+..+.....++.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 179 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCVL-------HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SSCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcCceEEEEeCCCCeEe---eCCCCCCccccceEEEE-------CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 145888998776422 11112222111222222 45666666654 45788887665
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.14 E-value=0.4 Score=42.36 Aligned_cols=137 Identities=10% Similarity=0.037 Sum_probs=78.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee------e
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------G 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------~ 153 (579)
..+|+....| +++.=.+.++.. ..++-.+-=..+.+++|+|+|.+ +.. .+|.++-.+..++... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGEL-YGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCE-EEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccE-EEE-eCCeEEEECCCCCCccccccccc
Confidence 3445556665 655544444331 11221111246789999998874 444 7888888887553221 1
Q ss_pred Eeec-CCCCeeEEEEccCCCEEEEECCeEEEEECCCCee------eEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058 154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~------~~~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~ 225 (579)
.+-. --....++.|.|+|.+.++..|.|+-++-.+... -..+.. -=..+..|.|.|+|...++. |+.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence 1110 0012578999999999999669998887533211 011111 11457899999999766553 66654
Q ss_pred EEE
Q 008058 226 LWR 228 (579)
Q Consensus 226 vwd 228 (579)
-+.
T Consensus 158 r~~ 160 (236)
T 1tl2_A 158 KAL 160 (236)
T ss_dssp EEC
T ss_pred ecC
Confidence 433
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.10 E-value=0.4 Score=54.25 Aligned_cols=195 Identities=11% Similarity=0.101 Sum_probs=115.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecC----CC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRAS----TK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~----~~ 160 (579)
...++.- ....+.|+|+.+...+.... ...+|.--.|-.+.. |+-. .+..|+-|++... .+++.|.-| ..
T Consensus 77 ~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 77 SKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcchhcccC
Confidence 3445554 36779999999887765542 235677777765443 3333 2556999999642 444445444 34
Q ss_pred CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEe--cCCCEEEEEec---CCCeEEE
Q 008058 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~---~d~~i~v 226 (579)
.|..-..+++.++++..+ |.+.+|..+.+ .-..+.||.+....+... +....+++-+. ..+.++|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 777888899999888654 78999988654 233456676554444332 11122322221 1267888
Q ss_pred EEcCCC-c--cc-cce---eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058 227 WRTDGV-K--KQ-SAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 227 wd~~~~-~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
-++... . .. ... ..+.-+......-.+..+ +.-..+...+.-|.+++||+.|+..+....
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence 888543 1 00 000 111111222333333343 566778888999999999999998876543
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.06 E-value=0.52 Score=44.77 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=54.5
Q ss_pred CcEEEEEECC-------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCce
Q 008058 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~ 151 (579)
+.+++.|+.+ .++.+||+.+++....-. ......-..+. .+++.++.|+. -..+.+||+.+.+-
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 5566676653 248899998887542211 00001111222 36666666653 23589999987643
Q ss_pred eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCe
Q 008058 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (579)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~ 190 (579)
... +...... .+++. -++++++.|+ ..+.+||..+.+
T Consensus 188 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 188 KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 222 1111111 22222 2677777775 368899988764
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.95 E-value=0.048 Score=53.28 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=78.5
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.|+.+ ..||+|++||..+ +.+|.|-.+-.+.....-.+....+....|...-........+..+.|+|....
T Consensus 67 ~i~ql--vlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~----- 138 (452)
T 3pbp_A 67 DTFHV--ISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR----- 138 (452)
T ss_dssp TTCEE--EECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-----
T ss_pred ceeEE--EECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-----
Confidence 45444 8999999999887 457888877633211000000011111122211001112456888999998766
Q ss_pred CCcEEEEEECCCeEEEEEccCCeE-EEEec--------CCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeC
Q 008058 85 GSSLLVLGTGGGDVLALAVSAGQL-KWRLS--------DCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDP 146 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~--------~~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~ 146 (579)
+..|++-+.|+.|++||+..... ...+. ......|.+++|.+++-.|+..+ ..|.|+..-.
T Consensus 139 -ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 139 -DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp -GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESS
T ss_pred -CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECC
Confidence 78999999999999999986321 11111 11225688889988766666654 6676665543
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.95 E-value=1.3 Score=42.82 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.2
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECC
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTL 35 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~ 35 (579)
..++|.|||++|..+...|.|++++..
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 356999999844455668999999853
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.93 E-value=1.4 Score=43.19 Aligned_cols=235 Identities=11% Similarity=0.120 Sum_probs=137.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+.--+|..+.+|.=. ..++.|+|+++...+..+.-. ..+.--.|.+. +.|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-------------------e~VvfWkWis~----------~~l 119 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------------DDVTFWKWISL----------NTV 119 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-------------------SCCCEEEEEET----------TEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-------------------CCceEEEecCC----------CeE
Confidence 334578888887765 568999999998887766522 12333445543 334
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecC
Q 008058 90 VLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~ 158 (579)
+.. .+..|+.|++.......+.+..| ...|..-..+++.++++..+ -.|.+.+|..+.+ .-+.+.+|
T Consensus 120 ~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 120 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp EEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred EEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 443 45679999997543332333333 35688888899999876543 2467889997644 44567777
Q ss_pred CCCeeEEEEccC---CCEEEEEC-----CeEEEEECCCC---e------eeEEe-e--cCCCCEEEEEEecCCCEEEEEe
Q 008058 159 TKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH---K------KMQKF-S--GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 159 ~~~v~~l~~~p~---g~~l~~~~-----g~i~vwd~~~~---~------~~~~~-~--~h~~~v~~l~~~~~~~~l~s~s 218 (579)
......+.+..+ .++++.+. +.++|-++... . .+..+ + ...+-..++..++.-..++..+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 655444443321 12334332 68889888532 1 11111 1 1123355778888776666666
Q ss_pred cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 287 (579)
.-|.+.+||+.++... +...-....+-..+.. ....=++.....|.|.--.++....+
T Consensus 278 -K~G~i~lyDleTgt~i-----~~nrIs~~~iF~t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 278 -KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp -TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred -cCceEEEEecccceee-----eeecccCCceEEeccc-----CCCCcEEEEccCceEEEEEEccccch
Confidence 6899999999999744 3322222222222222 33344555667777766655554443
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.39 E-value=3.8 Score=44.23 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=105.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----cCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~ 160 (579)
...|.+|+.+| +..||..+++... ........|.++.. .+| .|..++.+ -+..+|..+++.. .+. ....
T Consensus 73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~ 146 (758)
T 3ott_A 73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN 146 (758)
T ss_dssp TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence 45678888765 7899998876532 11112345777754 344 56667666 5888998765533 331 1234
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee--cC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~--~h----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~ 234 (579)
.|.++...++|.+.+...+-+..|+..+++.. .+. .. ...|.++...+++..|..++ . +-+..++..+++.
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeE
Confidence 68899888888877765566888998776532 221 11 12488888887766555554 2 3588888776542
Q ss_pred ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
. ....+ ....+..+... ++|.. ..|+. +-+.+++..+.
T Consensus 224 ~---~~~~l--~~~~i~~i~~d-----~~g~l-WigT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 K---QTEAF--HNNSIKSLALD-----GNGDL-LAGTD-NGLYVYHNDTT 261 (758)
T ss_dssp E---EEEEE--EEEEEEEEEEC-----TTCCE-EEEET-TEEEEECCTTS
T ss_pred E---eccCC--CCCeEEEEEEc-----CCCCE-EEEeC-CceeEEecCCC
Confidence 2 11111 12234445444 45554 44554 45788887654
No 332
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.19 E-value=1 Score=43.45 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEee---cCCCCeeEEEEccC---CCEEEEEC--------CeE
Q 008058 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFR---ASTKGISCMAVSSD---GKMLATAA--------GQL 181 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~v~~l~~~p~---g~~l~~~~--------g~i 181 (579)
...++++|.|+|+. +.+..+|.|++++ +++. +..+. ........|+++|+ +..|+++. +.|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45789999999985 4555779999998 4542 11111 12347899999998 44444432 467
Q ss_pred EEEECCCCe-----ee-EEee---cCCCCEEEEEEecCCCEEEEEe
Q 008058 182 KTFNCSDHK-----KM-QKFS---GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 182 ~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~~~~~~~l~s~s 218 (579)
..|+...++ .+ ..+. +.......++|.|+|..+++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 788876431 12 2233 1112246899999997666543
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.08 E-value=2.5 Score=40.50 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=23.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (579)
..++|.|||+++++--..|+|++++..++..
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 3569999998776665589999998766654
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.80 E-value=1.2 Score=50.63 Aligned_cols=190 Identities=13% Similarity=0.160 Sum_probs=107.4
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
-+|..+.+|.=. ..++.|+|+++...+..+.- ..++.--.|.+ .+.|+..
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis----------~~~l~lV 122 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWIS----------LNTVALV 122 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecC----------CCeeEEE
Confidence 467777666554 56788888877766554431 11222333443 2334433
Q ss_pred ECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCCCC
Q 008058 93 TGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.+..|+.|++.........+..| ...|..-..+++.++++..| -.|.+.+|....+ .-+.+.||.+.
T Consensus 123 -T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~ 200 (1630)
T 1xi4_A 123 -TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS 200 (1630)
T ss_pred -cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhh
Confidence 35679999997543332333333 45688888889999866543 3478888887543 33445666554
Q ss_pred eeEEEEc--c-CCCEEEEEC-----CeEEEEECCCC---ee------eEEe-ec--CCCCEEEEEEecCCCEEEEEecCC
Q 008058 162 ISCMAVS--S-DGKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 162 v~~l~~~--p-~g~~l~~~~-----g~i~vwd~~~~---~~------~~~~-~~--h~~~v~~l~~~~~~~~l~s~s~~d 221 (579)
...+... + ...+++.+. +.++|-++... .. +..+ +. ...-..++..++.-..+...+ .-
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it-k~ 279 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KY 279 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe-cC
Confidence 4333332 1 122333332 57888887542 11 1111 11 122234566666555555555 58
Q ss_pred CeEEEEEcCCCccc
Q 008058 222 RYIALWRTDGVKKQ 235 (579)
Q Consensus 222 ~~i~vwd~~~~~~~ 235 (579)
|.+.++|+.++...
T Consensus 280 G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 280 GYIHLYDLETGTCI 293 (1630)
T ss_pred ceEEEEecccchhh
Confidence 99999999998754
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.73 E-value=4.2 Score=41.29 Aligned_cols=256 Identities=11% Similarity=0.103 Sum_probs=134.8
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccc-cccCccceEEeeecc-ccc---ccccCCcEEEEEEC
Q 008058 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE-HLSVDYTCMKWLSVD-RKK---KRKLGSSLLVLGTG 94 (579)
Q Consensus 20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~-~~~---~~~~~~~~l~~~~~ 94 (579)
|.+|+..|.|+|+-+-+++.+..+....... ..-|..+-+.. -+. ....+.|-... |.. ....+++++++-..
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~-~~G~G~t~esk~il~-~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDS-ATGWGLTNESRHIMG-DSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCT-TTCTTTBHHHHHHHG-GGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCC-CcccCCchhHHHHHh-cCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 5678889999999999999988775221100 00000000000 000 00011121100 000 00113777888775
Q ss_pred C-CeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeC-------CCcE---------EE---EeCCCCcee
Q 008058 95 G-GDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMV---------CE---IDPLTGSLL 152 (579)
Q Consensus 95 ~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~-------dg~v---------~i---wd~~~~~~~ 152 (579)
. ..|-..++..-++-..+.-.....+.++.|- |+..|+++++. ||.. .+ .|..+.+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 4 4588888888776555544567789999996 68888887753 2321 01 122222221
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-C----------------eEEEEECC-------CCe-------eeEEeec----
Q 008058 153 GKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNCS-------DHK-------KMQKFSG---- 197 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-g----------------~i~vwd~~-------~~~-------~~~~~~~---- 197 (579)
..+.. .+....+...++|++.++.+ + -+.++|+. .|+ -+..+.+
T Consensus 231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 11111 12233445566777766653 1 25555542 010 0112211
Q ss_pred -----------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc-------ccceeE-EeeecCceeeEeEEecCC
Q 008058 198 -----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCV-LAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 198 -----------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~ 258 (579)
-......+.++|||++++.++--+.++.++|++.... ....++ ...+ .+.-..-..|+
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd-- 386 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFD-- 386 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEEC--
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEEC--
Confidence 1123457889999999999988889999999985221 001111 1222 22222335565
Q ss_pred cccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 259 GVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 259 ~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
++|.-..+.-.|..|.-|+++..
T Consensus 387 ---~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 387 ---GRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp ---SSSEEEEEETTTTEEEEEEHHHH
T ss_pred ---CCCceEeeeeecceEEEEeccHH
Confidence 78854444557999999998654
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.72 E-value=1.5 Score=46.84 Aligned_cols=147 Identities=9% Similarity=0.086 Sum_probs=80.1
Q ss_pred CcEEEEEECC----CeEEEEEccCCeEEEEe-c------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCC
Q 008058 86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~-~------~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~ 148 (579)
+.+++.|+.+ .++.+||+.+++..... . ......-..+.+..+++.++.|+.+ ..+.+||+.+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5566666643 45999999988754322 1 1111122233332267677777643 3588899887
Q ss_pred Cceee--EeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEE-----eecCCCCEEEEEEecC-CCEEEE
Q 008058 149 GSLLG--KFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQK-----FSGHPGAVRFMTFSDN-GKYVLS 216 (579)
Q Consensus 149 ~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~-----~~~h~~~v~~l~~~~~-~~~l~s 216 (579)
.+-.. .+.... .-.+++...++++++.|+ +.+.+||..+.+-... +.........+.+..+ ++.++.
T Consensus 478 ~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 53222 111111 112333334788888887 2799999988753221 1111112233555555 556666
Q ss_pred EecC-C-----CeEEEEEcCCCc
Q 008058 217 SAVG-E-----RYIALWRTDGVK 233 (579)
Q Consensus 217 ~s~~-d-----~~i~vwd~~~~~ 233 (579)
+|.. + +.+.+||+.+..
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 6531 2 458899998876
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.70 E-value=3.3 Score=39.95 Aligned_cols=126 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred EEEEECCCeEEEEEccCCe-EEEEe--cCCCCCCEEEEEEccC---CCEEEEEeC----C----CcEEEEeCCCC--c--
Q 008058 89 LVLGTGGGDVLALAVSAGQ-LKWRL--SDCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S-- 150 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~-~~~~~--~~~h~~~V~~l~~~~~---~~~l~s~~~----d----g~v~iwd~~~~--~-- 150 (579)
++++...|.|++++ ..++ .+..+ .........+++|+|+ +..|+.+.. + ..|..|+.... .
T Consensus 42 l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 120 (354)
T 3a9g_A 42 YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK 120 (354)
T ss_dssp EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence 77778889999997 3444 22221 1122356899999998 556665543 3 56888887543 1
Q ss_pred ---ee-eEeecC-CCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCC---------eeeEEeecCCCC
Q 008058 151 ---LL-GKFRAS-TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSGHPGA 201 (579)
Q Consensus 151 ---~~-~~~~~~-~~~v~~l~~~p~g~~l~~~~---------------g~i~vwd~~~~---------~~~~~~~~h~~~ 201 (579)
.+ ..+... ......|+|.|||.++++.+ |.|.-++.... ..+. -.+|..
T Consensus 121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn- 198 (354)
T 3a9g_A 121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN- 198 (354)
T ss_dssp EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-
T ss_pred ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-
Confidence 11 112211 12346799999998777642 24555554321 0111 134443
Q ss_pred EEEEEEec-CCCEEEEE
Q 008058 202 VRFMTFSD-NGKYVLSS 217 (579)
Q Consensus 202 v~~l~~~~-~~~~l~s~ 217 (579)
...++|+| +++.+++-
T Consensus 199 p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 199 PQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCEEEECTTTCCEEEEE
T ss_pred cceEEEeCCCCCEEEEe
Confidence 46799999 67655543
No 338
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.51 E-value=3.6 Score=39.60 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=71.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEE---EE---ecCCCCCCEEEEEEccC---CCEEEEEeC--------CCcEEEEeCCC
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLK---WR---LSDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~---~~---~~~~h~~~V~~l~~~~~---~~~l~s~~~--------dg~v~iwd~~~ 148 (579)
++.++++...|.|++++.. +... .. ...........++|+|+ +..|+.+.. ...|..|++..
T Consensus 29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD 107 (353)
T ss_dssp TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence 5536677788999999853 3321 11 11112356799999996 556655532 23566676653
Q ss_pred C--c--eeeE-eec------CCCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCCe------------
Q 008058 149 G--S--LLGK-FRA------STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------ 190 (579)
Q Consensus 149 ~--~--~~~~-~~~------~~~~v~~l~~~p~g~~l~~~~---------------g~i~vwd~~~~~------------ 190 (579)
+ + .... +.. .......|+|.|||.++++.+ |.|.-++....-
T Consensus 108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 187 (353)
T 2g8s_A 108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV 187 (353)
T ss_dssp TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence 3 1 1111 111 111246799999997776643 356666654320
Q ss_pred eeEEe-ecCCCCEEEEEEec-CCCEEEE
Q 008058 191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS 216 (579)
Q Consensus 191 ~~~~~-~~h~~~v~~l~~~~-~~~~l~s 216 (579)
....+ .+|. ....++|+| +|+.+++
T Consensus 188 ~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 188 RAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11122 2343 357899999 6655444
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.47 E-value=3.2 Score=38.91 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=89.2
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g 171 (579)
+.|+..++..++.. .+.. .. +..|+++++.|+-.. .+..|+..++. |.....+..+.. .+++|+|
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEEC
Confidence 45777777766533 2211 12 236778899988775 34466666765 444444443332 4567888
Q ss_pred CEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeEEeeecCc
Q 008058 172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 172 ~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
+.|+-.+ .+|++-++..+.....+. +... ..++|++.+|+-+...+ ..|..-++...... .+....
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~------~Lt~~~ 226 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV------VLTEAN 226 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE------ECSCSC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE------EEeCCC
Confidence 8888665 688888887765443333 2232 34669999888775323 35666666654422 111111
Q ss_pred eeeEeEEecCCcccCCCcEEEEEEc--CCeEEEEECC
Q 008058 248 VFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQ 282 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~ 282 (579)
+ .+++ |++.+|..++. .+.|..-+++
T Consensus 227 --~--~~~~-----~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 227 --I--EHYN-----VYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp --E--EEEE-----EETTEEEEEECSSSCEEEEEETT
T ss_pred --c--ceEE-----ECCCEEEEEECCCCcEEEEEECC
Confidence 1 2354 77788776543 3455555544
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.26 E-value=0.96 Score=39.97 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=78.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCce------eeEeecC--CCCeeEEEEccCCCEEEEECCeEEEEECCCCee------eEE
Q 008058 129 GSCIYSAGADGMVCEIDPLTGSL------LGKFRAS--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQK 194 (579)
Q Consensus 129 ~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~--~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~------~~~ 194 (579)
...|+....| +++.=.+.++.. ..++ +. -..+..++|+|+|.+.++.+|.++-.+..+.+. -..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccE
Confidence 3456666666 666655554431 1222 22 237789999999998888558877777654211 111
Q ss_pred ee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc--eeEEeeecCceeeEeEEecCCcccCCCcEEEEE
Q 008058 195 FS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA--SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 195 ~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (579)
+- +-.. -..+.|.|+|.+.++ + ||.|+-++..+...... .....-...-..+..+++. |+|...++.
T Consensus 82 IG~~Gw~~-F~a~~fD~~G~LYav-~--dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-----p~G~Lyav~ 152 (236)
T 1tl2_A 82 IGNGGWNQ-FQFLFFDPNGYLYAV-S--KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-----PNGYLYAVH 152 (236)
T ss_dssp EECSCGGG-CSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-----TTSCEEEEE
T ss_pred eccccccc-ceEEEECCCCCEEEe-C--CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-----CCceEEEEe
Confidence 11 1111 468899999976665 3 69888887644332210 0011111122344778887 898877666
Q ss_pred EcCCeEE
Q 008058 271 SETGVCY 277 (579)
Q Consensus 271 ~~dg~i~ 277 (579)
||.++
T Consensus 153 --dg~ly 157 (236)
T 1tl2_A 153 --GQQFY 157 (236)
T ss_dssp --TTEEE
T ss_pred --CCcEE
Confidence 77754
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.25 E-value=3.6 Score=38.59 Aligned_cols=133 Identities=10% Similarity=0.126 Sum_probs=77.9
Q ss_pred CcEEEEEE--CCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCCC
Q 008058 86 SSLLVLGT--GGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~--~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..|+... .++ .|...++...... ++.. +.. ..|+|+++.|+-.+. ...|+..++..+.....+. +
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~ 185 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C 185 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred CCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence 56677665 333 4666666543332 3322 222 456788888887765 6788888987655443333 2
Q ss_pred CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCc
Q 008058 161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~~~ 233 (579)
... ..++|++.+|+-.. ..|..-++.... ...+.. ..+ ..|+|++..|+.+.. ....|..-++....
T Consensus 186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 222 34669888888765 267666766543 334432 233 347888988887642 23567777776644
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.12 E-value=4.7 Score=42.96 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=79.5
Q ss_pred CcEEEEEECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeE---
Q 008058 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGK--- 154 (579)
Q Consensus 86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~--- 154 (579)
+.++++|+.+ .++.+||+.+++....-.......-.+++...+++.++.|+.++ .+.+||+.+.+-...
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 5666776643 35899999987654221100111112233324778888887654 699999887642221
Q ss_pred --eecCCCCeeEEEEccC-CCEEEEEC---------CeEEEEECCCCee-----eEEeec---CCCCEEEEEEecCCCEE
Q 008058 155 --FRASTKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~-g~~l~~~~---------g~i~vwd~~~~~~-----~~~~~~---h~~~v~~l~~~~~~~~l 214 (579)
.........++.+..+ +++++.|+ +.+.+||+.+.+. ...+.. ....-.++....+++.+
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy 611 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL 611 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence 1111122234555655 66777765 2588999988761 222211 11111233344446666
Q ss_pred EEEecC-------CCeEEEEEcCCCc
Q 008058 215 LSSAVG-------ERYIALWRTDGVK 233 (579)
Q Consensus 215 ~s~s~~-------d~~i~vwd~~~~~ 233 (579)
+.+|.. ...+.+||+.+.+
T Consensus 612 v~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 612 IVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EECCccCCCCCCCCCeEEEEECCCCe
Confidence 666531 2458888887764
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.96 E-value=1.8 Score=41.60 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=62.9
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCE-EEEEEccCCCEEEEEeC------CCcEEEEeC--CCCce--eeEeecCCCCeeE
Q 008058 96 GDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGA------DGMVCEIDP--LTGSL--LGKFRASTKGISC 164 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~~~------dg~v~iwd~--~~~~~--~~~~~~~~~~v~~ 164 (579)
..+.+||+.+++....-.......- .+++.. +++.++.|+. ...+.+||+ .+.+- +..+........+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4799999998875422111111111 222222 5556666653 345777876 33321 1111111111122
Q ss_pred EEEccCCCEEEEEC-C-----------------------eEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058 165 MAVSSDGKMLATAA-G-----------------------QLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~-g-----------------------~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s 218 (579)
.+...++++++.|+ . .+.+||..+.+- +..+......-. +...+++.++.+|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEee
Confidence 22233667777776 1 478999887543 333332222212 2334677777777
Q ss_pred cCC-----CeEEEEEcCCCccc
Q 008058 219 VGE-----RYIALWRTDGVKKQ 235 (579)
Q Consensus 219 ~~d-----~~i~vwd~~~~~~~ 235 (579)
... ..+.++++++++..
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCE
T ss_pred eCCCCCEeeeEEEEEEcCcEeE
Confidence 421 13555677776643
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.59 E-value=6.6 Score=39.29 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (579)
..++|.|||+++++-...+.|++++..++..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 4569999998776654335788887655553
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.51 E-value=9.4 Score=38.14 Aligned_cols=101 Identities=10% Similarity=0.183 Sum_probs=60.9
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEeec------CCCCeeEEEEccC---CCEEEEEC--------
Q 008058 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFRA------STKGISCMAVSSD---GKMLATAA-------- 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~------~~~~v~~l~~~p~---g~~l~~~~-------- 178 (579)
...++++|.|+|+.+++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|..+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45689999999986666543357998886555432 22221 2346779999995 44444332
Q ss_pred -------CeEEEEECCCC-------eeeE-Eeec-CCCCEEEEEEecCCCEEEEEe
Q 008058 179 -------GQLKTFNCSDH-------KKMQ-KFSG-HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 179 -------g~i~vwd~~~~-------~~~~-~~~~-h~~~v~~l~~~~~~~~l~s~s 218 (579)
..|.-|+...+ +.+. .+.. .......|+|.|||.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 24555554321 1122 2221 123468999999998777765
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.17 E-value=1.3 Score=44.81 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=68.9
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECCCC------ee-------eEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058 160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH------KK-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~------~~-------~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~ 223 (579)
.....+.++|||+++++++ .++.++|++.. +. +.... -.......+|.++| ...++-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 3456789999999999998 69999998742 11 22222 22345678999999 55566567999
Q ss_pred EEEEEcCCC------ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058 224 IALWRTDGV------KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 224 i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 272 (579)
|.-|++... +.. ...+..+.-+-..-.....-.....++|++|++.+.
T Consensus 401 vvkWni~~a~~~~~g~~~-~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKV-NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccC-CeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 999998653 211 123333443333333332222233488999988854
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.94 E-value=11 Score=35.91 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=63.9
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEe----ecCCCCeeEEEEccC----CCEEEEE---C-CeEE
Q 008058 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKF----RASTKGISCMAVSSD----GKMLATA---A-GQLK 182 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~----~~~~~~v~~l~~~p~----g~~l~~~---~-g~i~ 182 (579)
-...+.++|.|||+.+++--..|.|++++...++.. ..+ .........|+++|+ +.+.++- . +.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 356799999999987766655899999987655432 111 123457899999995 4444431 2 5666
Q ss_pred EEECCCC----------eee-EEeec-CCCCEEEEEEecCCCEEEEEe
Q 008058 183 TFNCSDH----------KKM-QKFSG-HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 183 vwd~~~~----------~~~-~~~~~-h~~~v~~l~~~~~~~~l~s~s 218 (579)
-|....+ +.+ ..+.. ....-..|.|.|||..+++.+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 6766541 112 22321 112345799999998777765
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.69 E-value=20 Score=38.40 Aligned_cols=140 Identities=12% Similarity=0.148 Sum_probs=85.8
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEec---CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----- 158 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----- 158 (579)
..|.+++.+ -+..||..+++...-.. .-....|.++...++|... .++.+| +..+|..+++.. .+...
T Consensus 113 g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~-~~~~~~~~~~ 188 (758)
T 3ott_A 113 DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-LCRYIPSNGKFE-GIPLPVHSSQ 188 (758)
T ss_dssp TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE-EEETTE-EEEEETTTTEEE-EECCCCCTTC
T ss_pred CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-HhhCccCCCceE-EecCCCcccc
Confidence 357777766 68889988766532100 1123468888888777654 455544 788897766432 22211
Q ss_pred -CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058 159 -TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 159 -~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~ 233 (579)
...|.++...+++..|..|. +-+..+|..+++......-....|.++...++|...+. + .+ -+.+++..+..
T Consensus 189 ~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T-~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 189 SNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-T-DN-GLYVYHNDTTP 262 (758)
T ss_dssp SSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-E-TT-EEEEECCTTSC
T ss_pred ccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-e-CC-ceeEEecCCCc
Confidence 12488888888777555555 66888998776542211112345788888888876554 3 34 47788876543
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.30 E-value=15 Score=33.68 Aligned_cols=188 Identities=14% Similarity=0.139 Sum_probs=104.7
Q ss_pred CcEEEEEECCCeEEE---EEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc------eeeEe
Q 008058 86 SSLLVLGTGGGDVLA---LAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS------LLGKF 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~i---wd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~------~~~~~ 155 (579)
...++.-+..|.++- |++..+.... ++ .....|..+.... +..+++..+.+|.++...+.... ....+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 345778888888554 4444333221 22 2456677765422 56789999999999999865432 22223
Q ss_pred ecCCCCeeEEEEccCC-CEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058 156 RASTKGISCMAVSSDG-KMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g-~~l~~~~-g~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i 224 (579)
+. .+.+..+....+. .+++... |.++.+.... |.....+.. ...|..+...+++.+++..+ ..|.+
T Consensus 113 ke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T-~~G~~ 189 (276)
T 3no0_A 113 TE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVIT-AKGRV 189 (276)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEE-TTSCE
T ss_pred CC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEe-CCCcE
Confidence 32 3345555444333 4455555 8877776532 112222332 34566665555566777776 68999
Q ss_pred EEEEcCCCcccc--ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE--EECCCc
Q 008058 225 ALWRTDGVKKQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI--WYGQNI 284 (579)
Q Consensus 225 ~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i--wd~~~~ 284 (579)
+...+..-.... ...+..+...+..+.+... .+...++..+.+|.+.. ++...-
T Consensus 190 kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~------~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 190 KKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI------KEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE------SSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe------CCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 988875432211 1122223333444443333 24456777888888887 876543
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.95 E-value=35 Score=32.92 Aligned_cols=133 Identities=11% Similarity=0.162 Sum_probs=83.4
Q ss_pred eEEEEEccCC--eEEEEecCC-----CCCCEEEEEEc---cC----CCEEEEEe-CCCcEEEEeCCCCceeeEee----c
Q 008058 97 DVLALAVSAG--QLKWRLSDC-----HPGGVSAISFA---TH----GSCIYSAG-ADGMVCEIDPLTGSLLGKFR----A 157 (579)
Q Consensus 97 ~i~iwd~~~~--~~~~~~~~~-----h~~~V~~l~~~---~~----~~~l~s~~-~dg~v~iwd~~~~~~~~~~~----~ 157 (579)
+|.+||+.++ +.+.++.-. ..+.+.++.+. |+ +.+++.+. ..+-|.++|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999999 887665321 23468888887 22 34455444 46789999999887655432 1
Q ss_pred C--------------CCCeeEEEEccC----CCEEEEEC-CeEEEEECCC-----C---eeeEEeecCC---CCEEEEEE
Q 008058 158 S--------------TKGISCMAVSSD----GKMLATAA-GQLKTFNCSD-----H---KKMQKFSGHP---GAVRFMTF 207 (579)
Q Consensus 158 ~--------------~~~v~~l~~~p~----g~~l~~~~-g~i~vwd~~~-----~---~~~~~~~~h~---~~v~~l~~ 207 (579)
. ...+..|+++|+ ++.|.-.. ..-++|.+.+ . ..++.+ |.. +.-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEE
Confidence 0 237889999998 77777665 4445554432 1 122222 222 23345667
Q ss_pred e-cCCCEEEEEecCCCeEEEEEcCC
Q 008058 208 S-DNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 208 ~-~~~~~l~s~s~~d~~i~vwd~~~ 231 (579)
. .+|..+++- ...+.|..|+..+
T Consensus 283 D~~~G~ly~~~-~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAE-ANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEE-SSSSEEEEEETTS
T ss_pred eCCCCeEEEEe-ccCCeEEEEeCCC
Confidence 5 567555554 4788999999876
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.16 E-value=41 Score=32.46 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=77.8
Q ss_pred cEEEEeCCCC--ceeeEeecC------CCCeeEEEEc---cC----CCEEEEEC---CeEEEEECCCCeeeEEeecC---
Q 008058 140 MVCEIDPLTG--SLLGKFRAS------TKGISCMAVS---SD----GKMLATAA---GQLKTFNCSDHKKMQKFSGH--- 198 (579)
Q Consensus 140 ~v~iwd~~~~--~~~~~~~~~------~~~v~~l~~~---p~----g~~l~~~~---g~i~vwd~~~~~~~~~~~~h--- 198 (579)
.|.+||+.++ +.++++.-. ...+..+.+. |+ +.++..++ +.|.|||+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999998 888776532 2367888887 32 34555554 68999999998765544210
Q ss_pred ---------------CCCEEEEEEecC----CCEEEEEecCCCeEEEEEcCCCcccc---ceeEEeeecCc--eeeEeEE
Q 008058 199 ---------------PGAVRFMTFSDN----GKYVLSSAVGERYIALWRTDGVKKQS---ASCVLAMEHPA--VFMDCRC 254 (579)
Q Consensus 199 ---------------~~~v~~l~~~~~----~~~l~s~s~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~--~~~~~~~ 254 (579)
...+..|+.+|+ ++.|........ ++|.+.+.-... ...+..+.... ..-....
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 135778888887 777777664333 444443211100 01111222211 1111222
Q ss_pred ecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 255 IDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
.+ +.+|..+++--..+.|..|+..+
T Consensus 282 ~D----~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YD----PKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EC----TTTCEEEEEESSSSEEEEEETTS
T ss_pred Ee----CCCCeEEEEeccCCeEEEEeCCC
Confidence 31 03566666666677888887654
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.36 E-value=27 Score=34.91 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc---eeeEee---c------CCCCeeEEEEccC----CCEEEEEC--
Q 008058 118 GGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS---LLGKFR---A------STKGISCMAVSSD----GKMLATAA-- 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~---~~~~~~---~------~~~~v~~l~~~p~----g~~l~~~~-- 178 (579)
...+.|+|.|+|. .++.+...|.|++++..... .+..+. . .......|+|+|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3568999999996 45666789999999753221 122211 1 1357889999996 44444322
Q ss_pred ------------CeEEEEECCC----------CeeeEEee--cCCCCEEEEEEecCCCEEEEEe
Q 008058 179 ------------GQLKTFNCSD----------HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 179 ------------g~i~vwd~~~----------~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s 218 (579)
..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1444465542 12333332 1223467899999998877776
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.53 E-value=43 Score=30.67 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=86.4
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
..+++ . +|.|+.|-........ +...-...|..++...+ +.+.-. ||.|+.|=....-.+..-......|..++
T Consensus 74 hs~~l-~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~ 147 (282)
T 3qhy_B 74 HSLAL-K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD 147 (282)
T ss_dssp EEEEE-E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred EEEEE-E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence 33455 5 8999999865422110 00111246777776543 334445 99999996543211111111223566666
Q ss_pred EccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 167 ~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
...+-..+++ +|.|+.|-......+..-..-...|..++.-... .+.- . ||.|+.|-........ ......
T Consensus 148 ~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~al-~-~G~v~~wG~n~~gqlg----~p~~~~ 218 (282)
T 3qhy_B 148 GGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL-K-DGKVIAWGDNRYKQTT----VPTEAL 218 (282)
T ss_dssp ECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCTTSTTC----CCGGGG
T ss_pred cccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEEE-E-CCeEEEEECCCCCCCC----CCcccC
Confidence 6544334444 6888888655321111111112457777664433 2323 3 8999999866543221 011111
Q ss_pred ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
..+..+.+ ...+.++.+ ||.++.|-....
T Consensus 219 ~~v~~i~~--------G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 219 SGVSAIAS--------GEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp SSCCEEEE--------CSSCEEEEE-TTEEEEESTTCC
T ss_pred CCceEEEc--------CCCEEEEEE-CCEEEEecCCCC
Confidence 12222222 223334444 999999965443
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.68 E-value=25 Score=38.93 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=32.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (579)
++++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 667888888999999999999999999999988764
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=73.01 E-value=57 Score=29.86 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=88.6
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++ + +|.|+.|-......+. +.......|..++...+- .++. . ||.|+.|-....-.+..-..-...|..++..
T Consensus 37 ~~l-~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G 110 (282)
T 3qhy_B 37 LAL-K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAG 110 (282)
T ss_dssp EEE-E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEE
T ss_pred EEE-E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECc
Confidence 444 5 9999999865432111 011122357777664332 2333 4 8999999754321111111112467788877
Q ss_pred cCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCce
Q 008058 169 SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (579)
Q Consensus 169 p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (579)
.+-..+++ .|.|+.|-....-.+-.-......|..++.-.. +.+.-. |+.|+.|-........ ........
T Consensus 111 ~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~--~G~v~~wG~n~~gqlg----~p~~~~~~ 181 (282)
T 3qhy_B 111 AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK--NGGVIAWGDNYFGQTT----VPAEAQSG 181 (282)
T ss_dssp TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE--TTEEEEEECCTTSTTS----CCGGGGSS
T ss_pred CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE--CCEEEEecCCCCCCCC----CceecCCC
Confidence 66667777 889999976542111111112345666665433 333332 6899999876533221 01111122
Q ss_pred eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+..+.+ ...+.++- .||.++.|-....
T Consensus 182 v~~i~~--------G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 182 VDDVAG--------GIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp EEEEEE--------CSSEEEEE-ETTEEEEEECCTT
T ss_pred eEEEEe--------cCCEEEEE-ECCeEEEEECCCC
Confidence 333222 22333444 6999999975443
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.50 E-value=56 Score=36.05 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=33.2
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888899999999999999999999888753
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=68.98 E-value=77 Score=29.76 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=104.3
Q ss_pred CcEEEEEECCCeEEEEEc---cC------CeEEEEecC-CCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC---
Q 008058 86 SSLLVLGTGGGDVLALAV---SA------GQLKWRLSD-CHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG--- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~---~~------~~~~~~~~~-~h~~~V~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~--- 149 (579)
...+++-+..|.++-... .. |..+..+.. .....|.++..-+ +..+++..+.+|.++...+...
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 456788888888665543 32 222111111 2234566554433 5778999999999999876542
Q ss_pred ----ceeeEeecCCCCeeEE-EEccCCCEEEEEC-CeEEEEECC--CC---------eeeEEeecCCCCEEEEEEecCCC
Q 008058 150 ----SLLGKFRASTKGISCM-AVSSDGKMLATAA-GQLKTFNCS--DH---------KKMQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 150 ----~~~~~~~~~~~~v~~l-~~~p~g~~l~~~~-g~i~vwd~~--~~---------~~~~~~~~h~~~v~~l~~~~~~~ 212 (579)
.....++.. +.+..+ ..+.+..+++... |.+..+... .- .....+. ....|.++...+++.
T Consensus 133 ~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~ 210 (327)
T 3uc1_A 133 RSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT 210 (327)
T ss_dssp CSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC
T ss_pred ccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC
Confidence 222234432 344444 3444445555555 877777665 21 1112232 234566666655666
Q ss_pred EEEEEecCCCeEEEEEcCCCccccc--eeEE--eeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 213 YVLSSAVGERYIALWRTDGVKKQSA--SCVL--AMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 213 ~l~s~s~~d~~i~vwd~~~~~~~~~--~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+++..+ ..|.++.-.+..-..... .-+. .+.. .+..+.+... .+...++..+.+|.+.-++...-
T Consensus 211 ~ll~~T-~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~------~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 211 YLLVAT-SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV------DDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEEEE-TTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEE------CTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEEe-CCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEe------CCCccEEEEcCCCeEEEEehhhc
Confidence 777777 699999887654322110 1112 2222 3344443333 34456777888888888876543
No 358
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=66.94 E-value=92 Score=29.88 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=49.0
Q ss_pred CcEEEEEECCCeEEEEEccC-C-eEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCC----cEEEEeCCCCceeeEeec-
Q 008058 86 SSLLVLGTGGGDVLALAVSA-G-QLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADG----MVCEIDPLTGSLLGKFRA- 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~-~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~- 157 (579)
...|.+|+..| +.+++... + .............|.++++.| +...++.++..| .|...+ ..|+....+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 44688888877 55565443 2 221110011235799999998 334455555555 454432 23332222211
Q ss_pred -------------CCCCeeEEEEcc---CCCEEEEEC-CeEEEE
Q 008058 158 -------------STKGISCMAVSS---DGKMLATAA-GQLKTF 184 (579)
Q Consensus 158 -------------~~~~v~~l~~~p---~g~~l~~~~-g~i~vw 184 (579)
....|.++++.| .+.+.+.+. +.|...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 112477889987 344444333 555554
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.34 E-value=22 Score=36.65 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=32.5
Q ss_pred CEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCEEEE
Q 008058 119 GVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLAT 176 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~l~~ 176 (579)
..-.|+|+|.|+++++-..+ ..+.+.+..+++..+.+.++.+ .++.++|+||++.|.+
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 34678999999866654332 1234445455555444444332 5666666666655544
No 360
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_A
Probab=63.17 E-value=14 Score=33.75 Aligned_cols=60 Identities=15% Similarity=0.321 Sum_probs=43.8
Q ss_pred HHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCCCChhHHHHHHHH
Q 008058 495 RATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYK 557 (579)
Q Consensus 495 ~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~s~~~l~~~l~~l~~ 557 (579)
-..+.+|+...+..||++++. |-........+.+||.+||..-...| .++-...|+.|-+
T Consensus 180 l~~l~~ld~~~v~~LL~~~~~-wl~~~~~~~~~~~WlyaLLa~Ld~pL--~~~~~s~LR~LaR 239 (280)
T 3s6n_2 180 LSIVSRMNQATVTSVLEYLSN-WFGERDFTPELGRWLYALLACLEKPL--LPEAHSLIRQLAR 239 (280)
T ss_dssp HHHHTTSCHHHHHHHHHHHHH-GGGTSCCCHHHHHHHHHHHHHCCSSC--CHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHH
Confidence 356789999999999999995 65544456788899999999766665 4455555555544
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.71 E-value=37 Score=38.45 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=31.4
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (579)
.+.+++..++..++++-+.|+++|+||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455666778899999999999999999999988754
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.78 E-value=35 Score=34.81 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceeeEeecCC-CCeeEEEEccCCCEEEEE
Q 008058 118 GGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATA 177 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~g~~l~~~ 177 (579)
.....|.|.++|.+.++.... ..|..++..+++....+.... ..++.++|+||++.|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 346788898888765543211 134444554554443333221 245556666665555443
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.36 E-value=8.8 Score=43.52 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008058 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (579)
++++..++..++++-+.|+++|||++.+++++.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 555777888999999999999999999999988764
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.53 E-value=48 Score=33.83 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=44.0
Q ss_pred CeeEEEEccCCCEEEEEC--------------CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEec
Q 008058 161 GISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--------------g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~ 219 (579)
....|.|+++|.+.++.+ +.++.++..+++....+.+. ...++.++|+||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 567899999999888543 16777777778765555543 356899999999998887653
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.03 E-value=1.4e+02 Score=27.68 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=100.8
Q ss_pred CcEEEEEECCCeEEEEEccC---------CeEEEEec-CCCCCCEEEEEEc---cCCCEEEEEeCCCcEEEEeCCC----
Q 008058 86 SSLLVLGTGGGDVLALAVSA---------GQLKWRLS-DCHPGGVSAISFA---THGSCIYSAGADGMVCEIDPLT---- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~---------~~~~~~~~-~~h~~~V~~l~~~---~~~~~l~s~~~dg~v~iwd~~~---- 148 (579)
...+++.+..|.++-+.... |..+..+. -.....|.++..- +++.+++..+.+|.++...+..
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 132 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 132 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc
Confidence 55688888999866665531 22211111 1233456666442 3566788999999999987642
Q ss_pred ---CceeeEeecCCCCeeEEEE-ccCCCEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008058 149 ---GSLLGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~-~p~g~~l~~~~-g~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l 214 (579)
|.....+..+ +.+-.+.. ..+..+++... |.+..++... |.....+. ....|.++...+++..+
T Consensus 133 ~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~l 210 (307)
T 1zi0_A 133 RTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAI 210 (307)
T ss_dssp CTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEE
T ss_pred ccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEE
Confidence 2222223333 44444433 44455555555 8777776642 11112232 23456666554555667
Q ss_pred EEEecCCCeEEEEEcCCCcccc----ceeEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058 215 LSSAVGERYIALWRTDGVKKQS----ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 283 (579)
+..+ ..|.++-.++..-.... ......+.. ++..+...... +...++..+.+|.+.-++...
T Consensus 211 l~~T-~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~------~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTAT-QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD------DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEE-TTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEEC------TTCEEEEEESSCCEEEEEGGG
T ss_pred EEEE-cCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeC------CCceEEEEcCCCcEEEEeccc
Confidence 7776 68999888774322110 011112222 23444433332 345566777788777776544
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=52.83 E-value=1.8e+02 Score=28.75 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCeeEEEEccCCC--EEEEEC-CeEEEEECCCC---eeeEEee-----c----CCCCEEEEEEecC----CCEEEEEec-
Q 008058 160 KGISCMAVSSDGK--MLATAA-GQLKTFNCSDH---KKMQKFS-----G----HPGAVRFMTFSDN----GKYVLSSAV- 219 (579)
Q Consensus 160 ~~v~~l~~~p~g~--~l~~~~-g~i~vwd~~~~---~~~~~~~-----~----h~~~v~~l~~~~~----~~~l~s~s~- 219 (579)
.....|+|.|+|. ++++-- |.|++++.... ..+..+. + .......|+|+|+ +...++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3568999999996 666665 99999975422 1222221 1 1356788999996 443333221
Q ss_pred CC----------CeEEEEEcCCCc-----cccceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058 220 GE----------RYIALWRTDGVK-----KQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 220 ~d----------~~i~vwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 274 (579)
.+ ..|.-|.+.... ....+.++... ........+.|. |||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-----pDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-----PDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-----TTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-----CCCcEEEEeCCCC
Confidence 11 145556665321 11122333332 122334556676 8887776666543
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=52.63 E-value=1.5e+02 Score=27.73 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=80.6
Q ss_pred CcEEEEEECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--C----C---
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--T----G--- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~--~----~--- 149 (579)
...+++.+..|.|+.-.+..-. ....+ .. .+.+..+........++..+..|.+..+... . +
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l-ke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL-RD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC-CT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEE-CC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 6789999999999998876422 11122 22 3456665555556678888899998888765 2 1
Q ss_pred --ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-------eeeE--EeecCCCCEEEEEEecCCCEEEE
Q 008058 150 --SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQ--KFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 150 --~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-------~~~~--~~~~h~~~v~~l~~~~~~~~l~s 216 (579)
.....+. ....|.++...+++..++..+ |.++.-.+... +-+. .+..-.+.+..+....+...++.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 1111222 234666666655555555544 88777765421 1122 22221334555444444444555
Q ss_pred EecCCCeEEEEEcCC
Q 008058 217 SAVGERYIALWRTDG 231 (579)
Q Consensus 217 ~s~~d~~i~vwd~~~ 231 (579)
.+ .+|.+.-++...
T Consensus 266 ~T-~~G~~ir~~~~~ 279 (327)
T 3uc1_A 266 VT-SGGGVIRTAARQ 279 (327)
T ss_dssp EE-GGGCEEEEEGGG
T ss_pred Ec-CCCeEEEEehhh
Confidence 55 477777776644
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.89 E-value=2e+02 Score=27.49 Aligned_cols=190 Identities=14% Similarity=0.172 Sum_probs=95.2
Q ss_pred CcEEEEEECCCeEEEEEccCC-----------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-c---
Q 008058 86 SSLLVLGTGGGDVLALAVSAG-----------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-S--- 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~-----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~--- 150 (579)
....++-+.+|.|+.|-.... .....+..-....+..++++.-..+.+.-..||.|+.|-.... +
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 455677788999999975421 0111111112234556667666667777788999999954221 0
Q ss_pred -------eeeEeecC-CCCeeEEEEccCCCEEEEECCeEEEEECCC-Ce---------e-eEEeec-CCCCEEEEEEecC
Q 008058 151 -------LLGKFRAS-TKGISCMAVSSDGKMLATAAGQLKTFNCSD-HK---------K-MQKFSG-HPGAVRFMTFSDN 210 (579)
Q Consensus 151 -------~~~~~~~~-~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~-~~---------~-~~~~~~-h~~~v~~l~~~~~ 210 (579)
....+... ...|..++....-..+++..|.|+.|-... ++ . ...+.. ....|..++....
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g 221 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC
Confidence 11112211 125666665533223333338888886432 11 0 111111 1234666665432
Q ss_pred CCEEEEEecCCCeEEEEEcCCCccc------cceeEEeeec--CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058 211 GKYVLSSAVGERYIALWRTDGVKKQ------SASCVLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 211 ~~~l~s~s~~d~~i~vwd~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 282 (579)
..+.+... .|+.|+.|-....... .......+.. ...+..+.+ ...+.++.+.||.|+.|-..
T Consensus 222 ~~~t~~l~-~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--------G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 222 DAQTLCLT-DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--------GSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp SCEEEEEE-TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--------ETTEEEEEETTSCEEEEECC
T ss_pred CcEEEEEc-cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--------CCCEEEEEeCCCeEEEEeCC
Confidence 23444444 6999999975432111 0000011111 111222222 33566677889999999754
Q ss_pred Cc
Q 008058 283 NI 284 (579)
Q Consensus 283 ~~ 284 (579)
..
T Consensus 293 ~~ 294 (389)
T 3kci_A 293 DY 294 (389)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=46.24 E-value=63 Score=33.26 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=42.8
Q ss_pred CeeEEEEccCCCEEEEECC--------------eEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEe
Q 008058 161 GISCMAVSSDGKMLATAAG--------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~g--------------~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s 218 (579)
..-.|+|+|.|+++++-++ .+.+.+..+++..+-+.++ ...++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3467899999998887651 3566677777766656554 36799999999999887753
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.13 E-value=23 Score=37.21 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=27.3
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008058 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~ 44 (579)
..+..++++-+.|+++|+|++.+++++.+..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4457799999999999999999999988765
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=41.71 E-value=2.2e+02 Score=26.38 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=104.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEE-------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---C------C
Q 008058 86 SSLLVLGTGGGDVLALAVSAGQLK-------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---T------G 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~------~ 149 (579)
...+++.+.+|.|+--.+..-+.. ..+.....+.+..+........++..+..|.++-+... . |
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 567899999999998877543211 11111122445555555556677777888987776542 1 1
Q ss_pred ce---eeEeecCCCCeeEEEEcc---CCC-EEEEEC-CeEEEEECCC-------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008058 150 SL---LGKFRASTKGISCMAVSS---DGK-MLATAA-GQLKTFNCSD-------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 150 ~~---~~~~~~~~~~v~~l~~~p---~g~-~l~~~~-g~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l 214 (579)
.. .-.+. ....|.++...+ +.. +++... |.++...+.. |.....+.. ...+..+....++..+
T Consensus 88 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 11 11122 223455543332 234 444444 8888776642 222333443 4556665555445556
Q ss_pred EEEecCCCeEEEEEcCCCcc----ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058 215 LSSAVGERYIALWRTDGVKK----QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 284 (579)
+..+ .+|.+..+....-.. ........+...+..+.+... +++..|++.+..|..+.+++...
T Consensus 166 ~l~T-~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v------~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 166 ICLS-KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSV------KENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEE-TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEEC------TTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEe-CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEE------CCCCeEEEEECCCceEEEEHHHh
Confidence 6666 689988888754211 111222334444455555444 34567888999999988877543
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=40.95 E-value=3.5e+02 Score=28.54 Aligned_cols=189 Identities=9% Similarity=-0.020 Sum_probs=95.1
Q ss_pred cEEEEEECCCe----EEEEEccCCeEEEEecC--CCCC-----CEEEEEEccCCCEEEEE----------eCCCcEEEEe
Q 008058 87 SLLVLGTGGGD----VLALAVSAGQLKWRLSD--CHPG-----GVSAISFATHGSCIYSA----------GADGMVCEID 145 (579)
Q Consensus 87 ~~l~~~~~~g~----i~iwd~~~~~~~~~~~~--~h~~-----~V~~l~~~~~~~~l~s~----------~~dg~v~iwd 145 (579)
..++.-+.+|. ++++|+.+++.+..-+. ...+ ....++|..++..+++. +....|+.|.
T Consensus 143 ~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 222 (711)
T 4hvt_A 143 RYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWK 222 (711)
T ss_dssp EEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEE
T ss_pred EEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEE
Confidence 34444555554 99999999987632211 0000 01334776433333332 1124688888
Q ss_pred CCCCc--eeeEeecCCCCe-eEEEEccCCCE-----EEEEC-----CeEEEEECCC--CeeeEEeecCCCCEEEEEEecC
Q 008058 146 PLTGS--LLGKFRASTKGI-SCMAVSSDGKM-----LATAA-----GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDN 210 (579)
Q Consensus 146 ~~~~~--~~~~~~~~~~~v-~~l~~~p~g~~-----l~~~~-----g~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~ 210 (579)
+-+.. ....|.+....+ .+...++++++ +++.+ ..+++.|... ++ +..+..... ..+..+++
T Consensus 223 ~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~~~~~~ 299 (711)
T 4hvt_A 223 RGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--ATLQGSFK 299 (711)
T ss_dssp TTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--CEEEEEET
T ss_pred CCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--ceEeeeEC
Confidence 75542 233454433332 34555677662 34322 4667777653 33 223321221 12334456
Q ss_pred CCEEEEEec---------CCCeEEEEEcCCCcc-----ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC--
Q 008058 211 GKYVLSSAV---------GERYIALWRTDGVKK-----QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-- 274 (579)
Q Consensus 211 ~~~l~s~s~---------~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-- 274 (579)
+..++.... ..+.|...++..... .....++ .......+..+.+. .+..+++...+|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~------~~~l~~~~~~~~~~ 372 (711)
T 4hvt_A 300 EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT------KDRVFLATYDNVVA 372 (711)
T ss_dssp TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC------SSCEEEEEEETTEE
T ss_pred CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE------CCEEEEEEEECCEE
Confidence 655553211 356788888876421 1111222 23345556666664 346777777777
Q ss_pred eEEEEECCCce
Q 008058 275 VCYIWYGQNIE 285 (579)
Q Consensus 275 ~i~iwd~~~~~ 285 (579)
.+++++..++.
T Consensus 373 ~l~~~~~~~g~ 383 (711)
T 4hvt_A 373 KVVTFTLENEQ 383 (711)
T ss_dssp EEEEECEETTE
T ss_pred EEEEEECCCCc
Confidence 46777766553
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.03 E-value=47 Score=34.98 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=29.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (579)
.|.++.+ +..++++-+.|.++|+||+.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555555 467999999999999999999998877554
No 374
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=37.36 E-value=18 Score=27.43 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=28.6
Q ss_pred Chh-hHHHHhhccChhhHHHHHHHHHHHHhcCCCCc
Q 008058 490 PVK-KMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524 (579)
Q Consensus 490 ~~~-~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~ 524 (579)
-++ .|..|+..||+..+..+|+.+-.-...+|.+.
T Consensus 37 ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a 72 (109)
T 2l9b_A 37 TPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDA 72 (109)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 467 99999999999999999999886555666543
No 375
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=35.62 E-value=48 Score=26.93 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=40.3
Q ss_pred eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcC-CCCcchhHHHHHHHHH
Q 008058 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSR-SYKGKNILQWIYFILV 536 (579)
Q Consensus 484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~-~~~~~~~~~wl~~ll~ 536 (579)
+++..+...+|.+.|++|.......|++||-.-+..- ...+..++.|-.-++.
T Consensus 82 ~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e 135 (152)
T 3dwl_G 82 DVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVE 135 (152)
T ss_dssp HHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHH
Confidence 5677788889999999999999999999999766533 1345677777655544
No 376
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=32.87 E-value=58 Score=26.43 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.7
Q ss_pred eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCC-cchhHHHHHHHH
Q 008058 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYK-GKNILQWIYFIL 535 (579)
Q Consensus 484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~-~~~~~~wl~~ll 535 (579)
+++..+...+|+..|..|...+...|++||-.-+..-... +..++.|-.-++
T Consensus 81 ~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~ 133 (151)
T 1k8k_G 81 KVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKAL 133 (151)
T ss_dssp HHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcCCCcchHHHHHHHHHH
Confidence 5667777889999999999999999999999767543322 344556654444
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=27.13 E-value=3.7e+02 Score=24.72 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=81.4
Q ss_pred CcEEEEEECCCeEEEEEccC---C------eEEEEe-cCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCC----
Q 008058 86 SSLLVLGTGGGDVLALAVSA---G------QLKWRL-SDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLT---- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~---~------~~~~~~-~~~h~~~V~~l~~~~---~~~~l~s~~~dg~v~iwd~~~---- 148 (579)
...+++.+..|.++-+.... . ..+... .-.....|.++...+ ++.+++..+.+|.++...+..
T Consensus 58 ~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~ 137 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 137 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-
T ss_pred CCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc
Confidence 45688889999977776542 1 110000 011224455554433 466788889999999987743
Q ss_pred ---CceeeEeecCCCCeeEEEE-ccCCCEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008058 149 ---GSLLGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~-~p~g~~l~~~~-g~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l 214 (579)
|.....+.. .+.+-.+.. .++..+++... |.+..+.... |.....+.. ...|.++...+++..+
T Consensus 138 r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l 215 (312)
T 1suu_A 138 KSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYL 215 (312)
T ss_dssp ---CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEE
T ss_pred CCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeE
Confidence 222223443 345555444 34444555555 8888887643 112223332 3456666555556667
Q ss_pred EEEecCCCeEEEEEcCC
Q 008058 215 LSSAVGERYIALWRTDG 231 (579)
Q Consensus 215 ~s~s~~d~~i~vwd~~~ 231 (579)
++.+ ..|..+...+..
T Consensus 216 ~~vt-~~G~~kr~~~~e 231 (312)
T 1suu_A 216 LIVS-ENGYGKRLNMSK 231 (312)
T ss_dssp EEEE-TTSEEEEEEGGG
T ss_pred EEEE-CCCceEEEEHHH
Confidence 7766 689999888754
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.61 E-value=6.6e+02 Score=26.38 Aligned_cols=236 Identities=11% Similarity=0.124 Sum_probs=112.8
Q ss_pred EEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEecccccccccccccccccccc-ccCccceEEeeecccccccccC
Q 008058 12 SFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH-LSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 12 ~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
+++||+++++.+-. -..++++|+.+++.+.. +.. +..+.|. .......+.|...
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~--~~~---------~~~k~~~~~~~~~~~~~W~d~--------- 195 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN--GFE---------PITNSGKLLEGKFTYPTWINK--------- 195 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT--CSC---------CBCTTCCBCCEETCCEEEEET---------
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC--Ccc---------cccccccccccccceeeEECC---------
Confidence 48999998876422 24799999999987521 000 0000000 0012244577632
Q ss_pred CcEEEEEE--------C---CCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCE-----EEEEeCC---CcEE
Q 008058 86 SSLLVLGT--------G---GGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSC-----IYSAGAD---GMVC 142 (579)
Q Consensus 86 ~~~l~~~~--------~---~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~-----l~s~~~d---g~v~ 142 (579)
+-++.++ . -..|+.|.+-+.. .+..- ....--.+...++++++ +++.+.+ ..++
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 272 (711)
T 4hvt_A 196 -DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEV--PKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNY 272 (711)
T ss_dssp -TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEEC--CTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEE
T ss_pred -CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEecc--CCCceEEEEEEecCCCceEEEEEEEEecccCceeEE
Confidence 2233332 1 1348888876542 23222 12222334556677663 4444422 3456
Q ss_pred EEeCCC--CceeeEeecCCCCeeEEEEccCCCEEEEE-----------C-CeEEEEECCCCe-------eeEE-ee-cCC
Q 008058 143 EIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATA-----------A-GQLKTFNCSDHK-------KMQK-FS-GHP 199 (579)
Q Consensus 143 iwd~~~--~~~~~~~~~~~~~v~~l~~~p~g~~l~~~-----------~-g~i~vwd~~~~~-------~~~~-~~-~h~ 199 (579)
+.|... ++. ..+..... ..+..++++.+++.. . +.|...|+.++. .... +. ...
T Consensus 273 ~~~~~~~~~~~-~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 273 ILDTKYKNLKL-QKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp EEECSSSSCEE-EECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred EEcCCCCCCcc-eEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 666543 332 22322222 123344566665522 2 678889987642 2233 32 223
Q ss_pred CCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEc---C
Q 008058 200 GAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE---T 273 (579)
Q Consensus 200 ~~v~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~---d 273 (579)
..+..+.+..+ ..+++.. .++. +.++++.+++... .....+... ..+.....+ +++ .++++.+. -
T Consensus 350 ~~l~~~~~~~~-~l~~~~~-~~~~~~l~~~~~~~g~~~~-~~~i~lp~~-~~~~~~~~~-----~~~~~~~~~~ss~~~P 420 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATY-DNVVAKVVTFTLENEQWTK-PVVLKLPYQ-NAIFGMSSY-----EEEEEALITIENSIVP 420 (711)
T ss_dssp EEEEEEEECSS-CEEEEEE-ETTEEEEEEECEETTEECC-CEEECCCST-TCEEEEECC-----TTCSCEEEEEECSSSC
T ss_pred CeEEEEEEECC-EEEEEEE-ECCEEEEEEEECCCCceEE-EeccCCCCC-eEEEEEeec-----CcCCEEEEEEecCCCC
Confidence 45677888766 3444443 5664 6677765553110 011122221 223333333 444 44444443 4
Q ss_pred CeEEEEECC
Q 008058 274 GVCYIWYGQ 282 (579)
Q Consensus 274 g~i~iwd~~ 282 (579)
+.++.+|..
T Consensus 421 ~~~~~~d~~ 429 (711)
T 4hvt_A 421 PTIYLWVKT 429 (711)
T ss_dssp CEEEEECTT
T ss_pred CEEEEEeCC
Confidence 578888875
No 379
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.12 E-value=1.9e+02 Score=28.91 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=37.6
Q ss_pred CcEEEEEECCCeEEEEEcc-CCe-------EEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058 86 SSLLVLGTGGGDVLALAVS-AGQ-------LKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~-~~~-------~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~i 143 (579)
-..+++|+.+|.|+=.-.. .+. .+..+.- ....+|..+.+++++.+|+.++.++.+++
T Consensus 421 ~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 421 YDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 4678999999985433322 211 1112221 23578999999999999999988776554
Done!