BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008059
         (579 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
           Fragment)
          Length = 225

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
          Length = 225

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
 pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
           At 1.2a Resolution
 pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
           At 1.55a Resolution
          Length = 225

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
           Fragment)
          Length = 225

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
           Fragment)
          Length = 225

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
           (Core Fragment)
 pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
           Mutant
          Length = 225

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
           Mutant Complexed To Adenine
 pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
           Mutant
          Length = 225

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 311 FWDPYGTRSELWNIDIGPYKHHCAIEASSVDLNRTTNALFLIHRLKFL-----LGKLASV 365
           ++D YG ++  W ID  PYK    +  S V L +T  A  + +  +F+     +  LA+ 
Sbjct: 13  WYDKYGRKTLPWQIDKTPYK----VWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANA 68

Query: 366 SLEGLNH-QQKLAFWI---NIYNSCIMNAFLEHG-IPETPEMVVAL 406
            L+ + H    L ++    N++ +    A L  G  PET E V AL
Sbjct: 69  PLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAAL 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,271,642
Number of Sequences: 62578
Number of extensions: 576953
Number of successful extensions: 1198
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 8
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)