Query 008059
Match_columns 579
No_of_seqs 264 out of 554
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ke4_A CDC42-interacting prote 92.1 0.35 1.2E-05 41.8 7.0 75 17-92 12-88 (98)
2 3o0z_A RHO-associated protein 83.2 8.8 0.0003 36.1 10.7 84 17-100 59-156 (168)
3 3ra3_B P2F; coiled coil domain 70.2 3.5 0.00012 26.8 2.7 20 68-87 9-28 (28)
4 1kd8_A GABH AIV, GCN4 acid bas 67.2 8.4 0.00029 27.2 4.4 27 65-91 7-33 (36)
5 2w6b_A RHO guanine nucleotide 65.9 9.7 0.00033 29.3 4.9 33 18-50 15-47 (56)
6 1fxk_A Prefoldin; archaeal pro 65.8 14 0.00048 31.2 6.7 79 19-97 14-103 (107)
7 3mq9_A Bone marrow stromal ant 64.0 9.2 0.00032 40.5 6.3 74 19-99 396-469 (471)
8 3ol1_A Vimentin; structural ge 62.1 15 0.00052 32.3 6.4 56 25-95 46-105 (119)
9 2zqm_A Prefoldin beta subunit 61.2 16 0.00055 31.2 6.3 80 20-99 20-110 (117)
10 4dzn_A Coiled-coil peptide CC- 59.9 19 0.00065 24.2 4.8 26 70-95 6-31 (33)
11 3m48_A General control protein 58.7 9.5 0.00032 26.5 3.3 23 65-87 6-28 (33)
12 4dzn_A Coiled-coil peptide CC- 58.3 13 0.00046 24.9 3.9 24 74-97 3-26 (33)
13 2wq1_A General control protein 57.6 14 0.00048 25.6 4.0 23 66-88 7-29 (33)
14 2lw1_A ABC transporter ATP-bin 55.2 41 0.0014 27.8 7.6 57 24-92 26-82 (89)
15 1g6u_A Domain swapped dimer; d 52.3 18 0.00062 26.1 4.1 24 73-96 20-43 (48)
16 1kd8_B GABH BLL, GCN4 acid bas 52.0 22 0.00076 25.0 4.4 26 66-91 8-33 (36)
17 1uo4_A General control protein 51.5 17 0.00058 25.3 3.7 23 65-87 7-29 (34)
18 1fmh_A General control protein 51.2 27 0.00093 23.5 4.5 24 68-91 3-26 (33)
19 1x79_B RAB GTPase binding effe 51.0 74 0.0025 28.0 8.7 63 23-99 9-71 (112)
20 2eqb_B RAB guanine nucleotide 50.8 29 0.00099 29.8 5.9 50 21-102 20-69 (97)
21 3swk_A Vimentin; cytoskeleton, 48.2 90 0.0031 25.8 8.5 28 23-50 24-51 (86)
22 3c3f_A Alpha/beta peptide with 46.1 28 0.00094 24.2 4.0 24 65-88 7-30 (34)
23 2l5g_B Putative uncharacterize 45.7 37 0.0013 24.8 4.8 29 69-97 5-33 (42)
24 2dfs_A Myosin-5A; myosin-V, in 45.7 39 0.0013 40.3 8.1 23 71-93 1021-1043(1080)
25 1ses_A Seryl-tRNA synthetase; 44.1 88 0.003 33.1 9.9 72 19-100 27-98 (421)
26 3um3_B Charged multivesicular 42.9 75 0.0026 27.5 7.4 55 28-90 7-61 (104)
27 4dac_A Computationally designe 42.7 5.3 0.00018 26.0 0.0 18 72-89 7-24 (28)
28 3he5_A Synzip1; heterodimeric 42.4 47 0.0016 24.1 4.9 16 76-91 6-21 (49)
29 1cxz_B Protein (PKN); protein- 41.2 1.4E+02 0.005 24.9 8.6 56 23-97 21-80 (86)
30 1m1j_C Fibrinogen gamma chain; 40.8 55 0.0019 34.9 7.5 75 21-98 32-116 (409)
31 1t2k_D Cyclic-AMP-dependent tr 39.4 49 0.0017 25.5 5.2 21 69-89 39-59 (61)
32 2lf0_A Uncharacterized protein 38.4 1E+02 0.0036 27.3 7.6 61 24-100 7-67 (123)
33 3oja_B Anopheles plasmodium-re 37.3 1.2E+02 0.0041 32.6 9.8 29 69-97 533-561 (597)
34 2xus_A Breast cancer metastasi 37.1 30 0.001 26.1 3.4 21 81-101 14-34 (49)
35 1uii_A Geminin; human, DNA rep 36.8 71 0.0024 26.6 5.9 37 43-94 38-74 (83)
36 2dfs_A Myosin-5A; myosin-V, in 36.8 1.1E+02 0.0039 36.3 10.2 29 20-48 921-949 (1080)
37 3he4_A Synzip6; heterodimeric 36.4 30 0.001 25.7 3.2 14 74-87 39-52 (56)
38 1ci6_A Transcription factor AT 36.0 59 0.002 25.4 5.2 25 69-93 33-57 (63)
39 3ra3_A P1C; coiled coil domain 35.8 17 0.00058 23.6 1.6 20 75-94 2-21 (28)
40 4dci_A Uncharacterized protein 35.5 2.6E+02 0.009 25.6 11.0 72 21-99 30-103 (150)
41 3ol1_A Vimentin; structural ge 34.9 1.2E+02 0.004 26.5 7.6 28 21-48 63-90 (119)
42 2yy0_A C-MYC-binding protein; 34.8 70 0.0024 24.3 5.3 34 65-98 18-51 (53)
43 3c3g_A Alpha/beta peptide with 34.6 54 0.0018 22.7 4.0 22 66-87 7-28 (33)
44 3he5_B Synzip2; heterodimeric 34.5 1.2E+02 0.0041 22.2 6.1 16 71-86 36-51 (52)
45 1gmj_A ATPase inhibitor; coile 34.0 1.2E+02 0.004 25.4 6.9 24 71-94 56-79 (84)
46 3o0z_A RHO-associated protein 33.5 24 0.00081 33.2 2.9 79 19-101 5-83 (168)
47 2r2v_A GCN4 leucine zipper; co 33.1 49 0.0017 23.0 3.7 23 65-87 7-29 (34)
48 1zme_C Proline utilization tra 32.8 35 0.0012 26.2 3.4 22 75-96 46-67 (70)
49 2dq0_A Seryl-tRNA synthetase; 32.4 75 0.0026 34.1 7.1 71 20-100 31-103 (455)
50 1nkp_B MAX protein, MYC proto- 31.8 68 0.0023 26.0 5.2 31 67-97 48-78 (83)
51 2dgc_A Protein (GCN4); basic d 31.8 58 0.002 25.5 4.5 31 67-97 31-61 (63)
52 3hnw_A Uncharacterized protein 31.6 2.3E+02 0.0078 25.4 9.1 22 69-90 113-134 (138)
53 3l4f_A RHO guanine nucleotide 31.2 74 0.0025 25.0 4.9 32 19-50 13-44 (61)
54 1fmh_A General control protein 31.1 51 0.0018 22.1 3.4 18 74-91 2-19 (33)
55 3ghg_C Fibrinogen gamma chain; 31.1 1.2E+02 0.0042 32.2 8.3 75 25-99 43-117 (411)
56 2hy6_A General control protein 31.0 66 0.0023 22.4 4.0 24 65-88 7-30 (34)
57 3ghg_A Fibrinogen alpha chain; 30.9 86 0.0029 34.4 7.0 41 24-82 114-154 (562)
58 2pnv_A Small conductance calci 30.0 44 0.0015 24.5 3.2 30 68-97 7-40 (43)
59 2oxj_A Hybrid alpha/beta pepti 29.7 72 0.0025 22.2 4.0 22 66-87 8-29 (34)
60 3he5_A Synzip1; heterodimeric 29.6 51 0.0017 23.9 3.4 18 69-86 6-23 (49)
61 3na7_A HP0958; flagellar bioge 28.9 2.4E+02 0.008 27.5 9.5 33 65-97 89-121 (256)
62 3viq_B Mating-type switching p 28.6 43 0.0015 28.1 3.4 30 69-98 4-33 (85)
63 1hjb_A Ccaat/enhancer binding 28.6 77 0.0026 26.5 5.0 31 68-98 45-75 (87)
64 2bni_A General control protein 28.5 66 0.0022 22.4 3.7 23 65-87 7-29 (34)
65 2lw1_A ABC transporter ATP-bin 28.3 53 0.0018 27.1 4.0 31 70-100 19-49 (89)
66 1ci6_A Transcription factor AT 28.3 1E+02 0.0036 23.9 5.4 19 71-89 42-60 (63)
67 2dq3_A Seryl-tRNA synthetase; 28.1 2.1E+02 0.0073 30.2 9.6 72 20-99 30-101 (425)
68 2ocy_A RAB guanine nucleotide 28.0 1.6E+02 0.0055 27.2 7.4 24 78-101 77-100 (154)
69 3qne_A Seryl-tRNA synthetase, 28.0 1.2E+02 0.004 33.1 7.6 71 20-100 33-105 (485)
70 2fxo_A Myosin heavy chain, car 27.1 2.3E+02 0.0079 24.8 8.2 82 14-99 35-123 (129)
71 1l8d_A DNA double-strand break 27.0 1.1E+02 0.0037 25.8 5.9 25 24-48 21-45 (112)
72 2v71_A Nuclear distribution pr 25.8 1.6E+02 0.0054 28.1 7.2 73 17-96 39-111 (189)
73 2wvr_A Geminin; DNA replicatio 25.4 1.1E+02 0.0037 29.6 5.9 29 68-96 117-145 (209)
74 3bas_A Myosin heavy chain, str 24.9 2.9E+02 0.01 22.7 9.1 30 21-50 15-44 (89)
75 1gu4_A CAAT/enhancer binding p 24.6 64 0.0022 26.5 3.7 31 67-97 44-74 (78)
76 1lwu_B Fibrinogen beta chain; 24.4 1E+02 0.0035 31.7 6.1 31 64-94 26-56 (323)
77 2wt7_A Proto-oncogene protein 24.3 1.4E+02 0.0047 23.1 5.4 22 70-91 27-48 (63)
78 1wle_A Seryl-tRNA synthetase; 23.6 1E+02 0.0036 33.5 6.3 81 20-100 70-150 (501)
79 2z5i_A TM, general control pro 23.4 96 0.0033 23.4 4.2 27 75-101 7-33 (52)
80 1jnm_A Proto-oncogene C-JUN; B 23.1 1.4E+02 0.0048 22.9 5.3 23 69-91 25-47 (62)
81 1wlq_A Geminin; coiled-coil; 2 22.8 1.4E+02 0.0049 24.8 5.4 26 69-94 41-66 (83)
82 3tnu_A Keratin, type I cytoske 22.6 3.9E+02 0.013 23.4 10.0 61 24-99 42-103 (131)
83 1joc_A EEA1, early endosomal a 22.1 1.1E+02 0.0039 26.8 5.1 32 68-99 6-37 (125)
84 1t2k_D Cyclic-AMP-dependent tr 22.0 1.6E+02 0.0056 22.4 5.4 30 67-96 30-59 (61)
85 1dh3_A Transcription factor CR 21.9 89 0.0031 23.7 3.8 26 68-93 24-49 (55)
86 4g1a_A AQ-C16C19 peptide; heli 21.6 42 0.0015 22.4 1.6 15 75-89 2-16 (32)
87 1jnm_A Proto-oncogene C-JUN; B 21.3 63 0.0021 25.0 2.9 22 69-90 39-60 (62)
88 2zvf_A Alanyl-tRNA synthetase; 20.8 2E+02 0.0069 25.8 6.8 32 61-92 27-58 (171)
89 2kes_A Synphilin-1; synphillin 20.0 1.7E+02 0.0058 21.5 4.6 29 22-50 6-34 (48)
No 1
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=92.13 E-value=0.35 Score=41.82 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=55.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 17 SNRERKMALLEDVDKLKRKLRHEENVHRALERAFTR--PLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNF 92 (579)
Q Consensus 17 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~--~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l 92 (579)
+..+||..|++.|.+|++.+++|..=|.+|++..+- ....+.. |..+-.+.-|.-.+|..|++|+-+++..+.++
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD-~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGD-PASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCC-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999998761 1111111 33445566666677778888888888777774
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.21 E-value=8.8 Score=36.12 Aligned_cols=84 Identities=19% Similarity=0.054 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCC----C---CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008059 17 SNRERKMALLEDVDKLKRKLRHEENVHRALERAFT---RPLGSLP----R---LPPYLPPYTLELLAEVAVLEEEVVRLE 86 (579)
Q Consensus 17 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~---~~~~~~~----~---~~~~lp~~~~eLl~Eia~lE~eV~~LE 86 (579)
.....|.+||+||..||.+|..|+.-|.--..... +-..++- . .-..+-...+.|-.-|..||-|-+.+|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567899999999999999999966553332110 0000000 0 000011234555666667777777777
Q ss_pred ----HHHHHHHHHHhhHH
Q 008059 87 ----EQVVNFRQGLYQEA 100 (579)
Q Consensus 87 ----~~v~~l~~~l~~e~ 100 (579)
=++..|+..+-||-
T Consensus 139 id~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 55777777777773
No 3
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=70.17 E-value=3.5 Score=26.81 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008059 68 TLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~ 87 (579)
--.|-.|||.||-||+-|||
T Consensus 9 narlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 34577899999999999986
No 4
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.22 E-value=8.4 Score=27.16 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=21.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v~~ 91 (579)
-.++.|||.|...||.||.+|+.-+-+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 357888999999999999988875543
No 5
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=65.87 E-value=9.7 Score=29.33 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 18 NRERKMALLEDVDKLKRKLRHEENVHRALERAF 50 (579)
Q Consensus 18 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (579)
.++.=.+|.||..+|++-|++|+.-|+-||+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999866
No 6
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.84 E-value=14 Score=31.16 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHH-----------HHHHHHHHHHHHHHH
Q 008059 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELL-----------AEVAVLEEEVVRLEE 87 (579)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl-----------~Eia~lE~eV~~LE~ 87 (579)
+.+...|.+.+..|+.++++=..+-..|+..=.......+.++.++.....+.+ .+|..||..+..++.
T Consensus 14 q~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 14 QQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777887777776666666766533332333444555554433333 334444555555555
Q ss_pred HHHHHHHHHh
Q 008059 88 QVVNFRQGLY 97 (579)
Q Consensus 88 ~v~~l~~~l~ 97 (579)
++..++..||
T Consensus 94 ~l~~lk~~l~ 103 (107)
T 1fxk_A 94 KLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.96 E-value=9.2 Score=40.52 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
++....|+|++.++|+.|.+=+.--..-.+ ...+| -..|.+++-.-++-|.-||.||..|++++.+++.++-+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANH----TVMAL---MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcch----hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888777654432111100 00000 01133344445577888899999999999988887765
Q ss_pred H
Q 008059 99 E 99 (579)
Q Consensus 99 e 99 (579)
+
T Consensus 469 ~ 469 (471)
T 3mq9_A 469 L 469 (471)
T ss_dssp H
T ss_pred h
Confidence 5
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.15 E-value=15 Score=32.32 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 008059 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAE----VAVLEEEVVRLEEQVVNFRQG 95 (579)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~E----ia~lE~eV~~LE~~v~~l~~~ 95 (579)
++.++..++.+.++|.++|..+|..+.. .+..+.+ -+-||..|--|.+++.-|+..
T Consensus 46 ~~~~~edfk~KyE~E~~~r~~~E~di~~---------------lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 46 LAEDIMRLREKLQEEMLQREEAENTLQS---------------FRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---------------hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999987632 1233333 233666666666666665543
No 9
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.24 E-value=16 Score=31.21 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHH-----------HHHHHHHHHHHHHHHHHHH
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTL-----------ELLAEVAVLEEEVVRLEEQ 88 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~-----------eLl~Eia~lE~eV~~LE~~ 88 (579)
.+-..|.+.+..|+.++++=..+-..|+..=.......+..+.++..... .+=.+|..||..+..++++
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655555555554322222223344444444333 3334455566666666666
Q ss_pred HHHHHHHHhhH
Q 008059 89 VVNFRQGLYQE 99 (579)
Q Consensus 89 v~~l~~~l~~e 99 (579)
+..++..||+-
T Consensus 100 l~~lk~~l~~~ 110 (117)
T 2zqm_A 100 LKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666643
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.89 E-value=19 Score=24.19 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 70 ELLAEVAVLEEEVVRLEEQVVNFRQG 95 (579)
Q Consensus 70 eLl~Eia~lE~eV~~LE~~v~~l~~~ 95 (579)
.|-.|||.|..||+-|.=++..|++.
T Consensus 6 alkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44455555555555555555555444
No 11
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=58.68 E-value=9.5 Score=26.46 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (579)
-.++.|||.|-.-||.||.+|..
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35789999999999999999864
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=58.29 E-value=13 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 74 EVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 74 Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
|||.|..||+-|.+++..|++++-
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888777653
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=57.65 E-value=14 Score=25.57 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008059 66 PYTLELLAEVAVLEEEVVRLEEQ 88 (579)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~~ 88 (579)
.++.|||.+...||.||.+|-.-
T Consensus 7 dKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999998653
No 14
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.20 E-value=41 Score=27.82 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNF 92 (579)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l 92 (579)
.|+.+|.+|+.+ -..|+..|..|.. ...=+..+.+|+++++.++.++..++..=..|
T Consensus 26 ~le~~Ie~LE~~-------i~~le~~ladp~~-----y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 26 QLPQLLEDLEAK-------LEALQTQVADASF-----FSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHSTTG-----GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHhCccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444 3456666654321 11125689999999999999999888776553
No 15
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.28 E-value=18 Score=26.15 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 73 AEVAVLEEEVVRLEEQVVNFRQGL 96 (579)
Q Consensus 73 ~Eia~lE~eV~~LE~~v~~l~~~l 96 (579)
+|+|.||.|+.-||+++..|+..|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998877655
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.04 E-value=22 Score=25.03 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 66 PYTLELLAEVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~~v~~ 91 (579)
.++.|||.+-..||.||.+|..-+-+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 57899999999999999999776543
No 17
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=51.50 E-value=17 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (579)
-.++.|||.+-.-||.||.+|..
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35789999999999999999865
No 18
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=51.17 E-value=27 Score=23.45 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 68 TLELLAEVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~ 91 (579)
+-.|-+|+|..|+|--.|||.|..
T Consensus 3 vaqlekevaqaeaenyqleqevaq 26 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQ 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345677888888888888888877
No 19
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=50.97 E-value=74 Score=27.96 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 23 MALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 23 ~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
..|+-++.+|+++|..+.+.|.-||..++. +..+==.+|+.|=+-|-.=|+.+.+|++.+.|=
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~--------------k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQ--------------SSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998643 455666777777777888888888877766643
No 20
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.77 E-value=29 Score=29.81 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008059 21 RKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQEA 100 (579)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e~ 100 (579)
.....+-++.+|+.+|.+|...|.. +|.+...+|+.|.+|-..||.|+
T Consensus 20 ~~~~~~~e~~~L~~~l~eE~~~R~~--------------------------------aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 20 ELSDRDDEVKRLREDIAKENELRTK--------------------------------AEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666777777777777664 45666778888888888888886
Q ss_pred Hh
Q 008059 101 VY 102 (579)
Q Consensus 101 ~~ 102 (579)
-.
T Consensus 68 N~ 69 (97)
T 2eqb_B 68 NN 69 (97)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=48.24 E-value=90 Score=25.85 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 23 MALLEDVDKLKRKLRHEENVHRALERAF 50 (579)
Q Consensus 23 ~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (579)
-.++.+|..++.+.++|.++|..+|.-+
T Consensus 24 dn~~~~~edfk~KyE~E~~~R~~~E~d~ 51 (86)
T 3swk_A 24 DNLAEDIMRLREKLQEEMLQREEAENTL 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999876
No 22
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=46.07 E-value=28 Score=24.25 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEEQ 88 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~ 88 (579)
-.++.+||.|-..||.||.+|..-
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357899999999999999998653
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.68 E-value=37 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 69 LELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
-|||.-|.-+-.||.+-|++|..|+..+-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888877664
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.67 E-value=39 Score=40.31 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008059 71 LLAEVAVLEEEVVRLEEQVVNFR 93 (579)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v~~l~ 93 (579)
|=..|+-||.|...||+++.+|.
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666655
No 25
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.14 E-value=88 Score=33.13 Aligned_cols=72 Identities=25% Similarity=0.283 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
-+.=.+|.++-..|+.++++=++-|..+.+.++... ...+.+|++|+..|-++|..||+++..+..+|..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----------PEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777788888888888888889999887511 1468899999999999999999999998888876
Q ss_pred HH
Q 008059 99 EA 100 (579)
Q Consensus 99 e~ 100 (579)
..
T Consensus 97 ~~ 98 (421)
T 1ses_A 97 LL 98 (421)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=42.93 E-value=75 Score=27.48 Aligned_cols=55 Identities=25% Similarity=0.458 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 28 DVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVV 90 (579)
Q Consensus 28 eV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~ 90 (579)
+|.+|...++++...-.=+-.+|+++.+.- .-+. --||.+|+..||.|. |+++++
T Consensus 7 kVe~lmDei~E~~e~~~EI~e~Ls~~~~~~----~~~D--EdELe~ELe~Le~e~--l~~~~l 61 (104)
T 3um3_B 7 KVDELMQDIADQQELAEEISTAISKPVGFG----EEFD--EDELMAELEELEQEE--LDKNLL 61 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC----CCCC--HHHHHHHHHHHHHHH--HHHHhh
Confidence 589999999999999998999998765421 1122 378889988888663 444443
No 27
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=42.67 E-value=5.3 Score=25.98 Aligned_cols=18 Identities=50% Similarity=0.508 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008059 72 LAEVAVLEEEVVRLEEQV 89 (579)
Q Consensus 72 l~Eia~lE~eV~~LE~~v 89 (579)
=+.+.-||.||-+||.+|
T Consensus 7 danvkrlekevgklegev 24 (28)
T 4dac_A 7 DANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHhhhhhhh
Confidence 334444444444444433
No 28
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.42 E-value=47 Score=24.12 Aligned_cols=16 Identities=44% Similarity=0.478 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008059 76 AVLEEEVVRLEEQVVN 91 (579)
Q Consensus 76 a~lE~eV~~LE~~v~~ 91 (579)
|.||.||+.||.+-.+
T Consensus 6 aqlenevaslenenet 21 (49)
T 3he5_A 6 AQLENEVASLENENET 21 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHH
Confidence 4444444444444433
No 29
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=41.19 E-value=1.4e+02 Score=24.90 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 008059 23 MALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAE----VAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 23 ~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~E----ia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
..||+..+.|++++++|..++.--|+.+ +-..+ .+.||.|+.....++..|+.+|.
T Consensus 21 ~~le~~r~~ir~eI~KElKiKeGaENL~-------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 21 QQLELERERLRREIRKELKLKEGAENLR-------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhHHHHH-------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588899999999999998888666533 33333 56788899999999999888775
No 30
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=40.75 E-value=55 Score=34.86 Aligned_cols=75 Identities=11% Similarity=0.207 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 21 RKMALLEDVDKLKRKLRHEENVH-------RALERAFTRPLGSLPRLPPY---LPPYTLELLAEVAVLEEEVVRLEEQVV 90 (579)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r-------~~Le~al~~~~~~~~~~~~~---lp~~~~eLl~Eia~lE~eV~~LE~~v~ 90 (579)
.+..+..+|.+|+..|++=.++. .++....+.. .+..+.. .-.+.++++.||..+|.-|..-|.+|.
T Consensus 32 ~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~---Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~ 108 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE---KQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQ 108 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS---TTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44445556666655555444433 3333333321 2222221 245677899999999998887777777
Q ss_pred HHHHHHhh
Q 008059 91 NFRQGLYQ 98 (579)
Q Consensus 91 ~l~~~l~~ 98 (579)
.|+..|-.
T Consensus 109 ~l~~~~~~ 116 (409)
T 1m1j_C 109 QLTDMHIM 116 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766553
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.37 E-value=49 Score=25.47 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLEEQV 89 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v 89 (579)
.+|-.||..|+.||..|.+.+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555544
No 32
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=38.44 E-value=1e+02 Score=27.27 Aligned_cols=61 Identities=25% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008059 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQEA 100 (579)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e~ 100 (579)
.|.+|+.+|..+|+ ..++=|..|..+.. ...+.++..||+.|+.+|.+|..+-.. .|..|+
T Consensus 7 ~~K~Eiq~L~drLD---~~~rKlaaa~~rgd----------~~~i~qf~~E~~~l~k~I~~lk~~q~~---~lske~ 67 (123)
T 2lf0_A 7 VEKNEIKRLSDRLD---AIRHQQADLSLVEA----------ADKYAELEKEKATLEAEIARLREVHSQ---KLSKEA 67 (123)
T ss_dssp SHHHHHHHHHHHHH---HHHHHHHHSCTTTC----------TTHHHHHHHHHHHHHHHHHHHHHHHHH---TCCHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHH
Confidence 57899999999997 46777777765532 234677777777777777777544322 355554
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.29 E-value=1.2e+02 Score=32.65 Aligned_cols=29 Identities=31% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 69 LELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
+++-++..-+|.|+..||+++...+.++.
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 45556666666666666666666555444
No 34
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=37.11 E-value=30 Score=26.12 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 008059 81 EVVRLEEQVVNFRQGLYQEAV 101 (579)
Q Consensus 81 eV~~LE~~v~~l~~~l~~e~~ 101 (579)
+++.||++-..||-+||+|+.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl 34 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERL 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999975
No 35
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.83 E-value=71 Score=26.64 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 43 HRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQ 94 (579)
Q Consensus 43 r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~ 94 (579)
|.||+.||. .-+.|-.+|..+++||+.|++....|+-
T Consensus 38 R~AL~eaL~---------------EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 38 RKALYEALK---------------ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777763 3477888899999999999998888764
No 36
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.77 E-value=1.1e+02 Score=36.32 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALER 48 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~ 48 (579)
+....||.+|.+||.+|+++++-+..|..
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~ 949 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLE 949 (1080)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888777666665554
No 37
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.43 E-value=30 Score=25.73 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 008059 74 EVAVLEEEVVRLEE 87 (579)
Q Consensus 74 Eia~lE~eV~~LE~ 87 (579)
+||-||.+|++||.
T Consensus 39 dianlekdianler 52 (56)
T 3he4_A 39 DIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.04 E-value=59 Score=25.38 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLEEQVVNFR 93 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~ 93 (579)
++|=.+-+.|+.+|..|+.++..|+
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555544444
No 39
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.81 E-value=17 Score=23.63 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008059 75 VAVLEEEVVRLEEQVVNFRQ 94 (579)
Q Consensus 75 ia~lE~eV~~LE~~v~~l~~ 94 (579)
|..||-|---|||++..|++
T Consensus 2 idalefendaleqkiaalkq 21 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQ 21 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHH
Confidence 33455555556666555443
No 40
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=35.49 E-value=2.6e+02 Score=25.59 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 008059 21 RKMALLEDVDKLKRKLRH-EENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEV-AVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~-E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Ei-a~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
....|++.+.++..+|++ |+..++++...-..+. ..+++.+++=|+.| ..+|.|...++++...|.+++-|
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~-------~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQVRRQSA-------NPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777654 6777777755432221 12457888888888 89999999999999998888875
Q ss_pred H
Q 008059 99 E 99 (579)
Q Consensus 99 e 99 (579)
=
T Consensus 103 v 103 (150)
T 4dci_A 103 V 103 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.87 E-value=1.2e+02 Score=26.55 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 21 RKMALLEDVDKLKRKLRHEENVHRALER 48 (579)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r~~Le~ 48 (579)
.|.++|.|+..|++.++++.-.|.-||.
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 3455555555555555555555544443
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.78 E-value=70 Score=24.27 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
+..+-.|..|++-|-.+|..|.+++..|+.+|.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999998888753
No 43
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.65 E-value=54 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008059 66 PYTLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~ 87 (579)
.++.|||.+=..||.||.+|..
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5788999999999999999865
No 44
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.54 E-value=1.2e+02 Score=22.22 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 008059 71 LLAEVAVLEEEVVRLE 86 (579)
Q Consensus 71 Ll~Eia~lE~eV~~LE 86 (579)
|-.|||-||.||+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4456666666665444
No 45
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.00 E-value=1.2e+02 Score=25.36 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 71 LLAEVAVLEEEVVRLEEQVVNFRQ 94 (579)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v~~l~~ 94 (579)
-..||.-||.+|-++.+.|..|..
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666677777777666666543
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=33.46 E-value=24 Score=33.22 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
.++-..||..+..++..|+.|.+-..=|.+..+--.-.. ..+-..+.||=.=++.|+..-..||+++..|+.+|-+
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~----~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSI----SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567999999999999999886666665443100000 1133456777778899999999999999999999999
Q ss_pred HHH
Q 008059 99 EAV 101 (579)
Q Consensus 99 e~~ 101 (579)
|+-
T Consensus 81 Er~ 83 (168)
T 3o0z_A 81 ERR 83 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 973
No 47
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.13 E-value=49 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (579)
-.++.|||.+-..||.||.+|-+
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788999999999999998864
No 48
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.77 E-value=35 Score=26.23 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008059 75 VAVLEEEVVRLEEQVVNFRQGL 96 (579)
Q Consensus 75 ia~lE~eV~~LE~~v~~l~~~l 96 (579)
|..||..|..||+.|..|+..|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766544
No 49
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.44 E-value=75 Score=34.09 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTR--PLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~--~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
+.=.+|.++-.+|+.++++=++-|..+.+.++. ..+ ..+.+|++|+..|-++|..||+++..+..+|.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG----------EPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777777663 112 24589999999999999999999999888887
Q ss_pred hHH
Q 008059 98 QEA 100 (579)
Q Consensus 98 ~e~ 100 (579)
...
T Consensus 101 ~~~ 103 (455)
T 2dq0_A 101 YYL 103 (455)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 50
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.84 E-value=68 Score=26.01 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
.++.|-.++..|+.|+..|+++...|+.+|-
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777788888888888888888777664
No 51
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.76 E-value=58 Score=25.49 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
.+.+|=.+|+.|+.+-..|+.+|..|+.+|.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777888888888888888777664
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.60 E-value=2.3e+02 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLEEQVV 90 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~ 90 (579)
.+|-.|+..|+.++++||.++.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443
No 53
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=31.24 E-value=74 Score=25.04 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 19 RERKMALLEDVDKLKRKLRHEENVHRALERAF 50 (579)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (579)
+..-.+|.||..++++=|.+|...|+-||+.+
T Consensus 13 kDev~eLk~e~k~~k~~le~eqraRk~LE~~v 44 (61)
T 3l4f_A 13 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999876
No 54
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=31.13 E-value=51 Score=22.12 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008059 74 EVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 74 Eia~lE~eV~~LE~~v~~ 91 (579)
|+|.||.||+.-|-.--.
T Consensus 2 evaqlekevaqaeaenyq 19 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQ 19 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhH
Confidence 688888888877765444
No 55
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.10 E-value=1.2e+02 Score=32.18 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
||..|.++...=..=+.+=.+|...+...--..|..-..+-.+.++.|.|+..+|.-|.+.+.+|..|+..+...
T Consensus 43 L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 43 LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444444443444445555665554332222221123445677899999999999999999998888776543
No 56
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.03 E-value=66 Score=22.39 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEEQ 88 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~ 88 (579)
-.++.|||.+=..||.||.+|-.-
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999999999998654
No 57
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.86 E-value=86 Score=34.39 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 008059 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEV 82 (579)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV 82 (579)
+|++.+..||.+++.+...-++|+..| .+++.||--||-+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnL------------------edq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNV------------------RAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 677777777777777777777777754 66666666666665
No 58
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.97 E-value=44 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.367 Sum_probs=23.5
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 008059 68 TLELLAEV----AVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 68 ~~eLl~Ei----a~lE~eV~~LE~~v~~l~~~l~ 97 (579)
+-+|+.|+ ..||.-|..||.++.+|...|-
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666 4699999999999999887663
No 59
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.72 E-value=72 Score=22.21 Aligned_cols=22 Identities=41% Similarity=0.482 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008059 66 PYTLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 66 ~~~~eLl~Eia~lE~eV~~LE~ 87 (579)
.++.|||.|=..||.||.+|..
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 5788999999999999998864
No 60
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.64 E-value=51 Score=23.92 Aligned_cols=18 Identities=44% Similarity=0.423 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLE 86 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE 86 (579)
-.|=.|+|.||.|-.-|.
T Consensus 6 aqlenevaslenenetlk 23 (49)
T 3he5_A 6 AQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHH
Confidence 456678999998744333
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.85 E-value=2.4e+02 Score=27.48 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
+.....|-.||..++.++..||.++..+...+-
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888887665553
No 62
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.63 E-value=43 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 69 LELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
..|-++|+.|++++..|++++..++.+|.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788999999999999999988877764
No 63
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.60 E-value=77 Score=26.54 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
+.+|-.|=+.|+.+|..|++++..|+.-|.+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777766654
No 64
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.55 E-value=66 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 008059 65 PPYTLELLAEVAVLEEEVVRLEE 87 (579)
Q Consensus 65 p~~~~eLl~Eia~lE~eV~~LE~ 87 (579)
-.++.|||.+=..||.||.+|..
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 35788999999999999999865
No 65
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.31 E-value=53 Score=27.15 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008059 70 ELLAEVAVLEEEVVRLEEQVVNFRQGLYQEA 100 (579)
Q Consensus 70 eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e~ 100 (579)
.+=.|+..||.+|..||.++..|..+|..-.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3446788888888888888888888776543
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.27 E-value=1e+02 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008059 71 LLAEVAVLEEEVVRLEEQV 89 (579)
Q Consensus 71 Ll~Eia~lE~eV~~LE~~v 89 (579)
|-.+|+.|+.||..|.+-+
T Consensus 42 L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 42 LKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554433
No 67
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.06 E-value=2.1e+02 Score=30.17 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
+.=.+|.++-.+|+.++++=++-|..+.+.++.....- ..+.+|++|+..|-++|..||+++..+..+|...
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--------KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--------SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777888888888888888889998887421111 1234555556666666666666666655555444
No 68
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.02 E-value=1.6e+02 Score=27.20 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 008059 78 LEEEVVRLEEQVVNFRQGLYQEAV 101 (579)
Q Consensus 78 lE~eV~~LE~~v~~l~~~l~~e~~ 101 (579)
.|.+...+|+.|.+|=..||.|+-
T Consensus 77 aE~~~~~ie~ElEeLTasLFeEAN 100 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTASLFDEAN 100 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777888888888888888864
No 69
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.97 E-value=1.2e+02 Score=33.07 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRP--LGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~--~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
+.=.+|.++-.+|+.++++=++-|..+-+.++.. .+ ..+.+|++|+..|-++|..||+++..+..+|.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~----------~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK----------EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666566666666555321 11 13578999999999999999999999888887
Q ss_pred hHH
Q 008059 98 QEA 100 (579)
Q Consensus 98 ~e~ 100 (579)
...
T Consensus 103 ~~l 105 (485)
T 3qne_A 103 SKI 105 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 70
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=27.08 E-value=2.3e+02 Score=24.84 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=47.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHH-------HHHHHHH
Q 008059 14 RRRSNRERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLE-------EEVVRLE 86 (579)
Q Consensus 14 ~~~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE-------~eV~~LE 86 (579)
.+....+....|.++...|+.+|+.|...-.-.+--+.+=.. --.-|..++.+|...+.-.| .+--+||
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~----~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIK----NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778899999999999999998774333322211000 00123445555555555433 3344567
Q ss_pred HHHHHHHHHHhhH
Q 008059 87 EQVVNFRQGLYQE 99 (579)
Q Consensus 87 ~~v~~l~~~l~~e 99 (579)
+++.+|+.+|-.+
T Consensus 111 ~e~~~Lk~~led~ 123 (129)
T 2fxo_A 111 DECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
No 71
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.97 E-value=1.1e+02 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 24 ALLEDVDKLKRKLRHEENVHRALER 48 (579)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~ 48 (579)
.|.++...++.++..=......|+.
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444333344433
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.84 E-value=1.6e+02 Score=28.08 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 17 SNRERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGL 96 (579)
Q Consensus 17 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l 96 (579)
+.++.-.+||.++.++++++.+-..-..-|..=+..-. ..+-..-.+.-..|..|+.||..|-.....|+..|
T Consensus 39 sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k-------~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 39 GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK-------EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999888888877776666654432100 00001112333347777777777777776666655
No 73
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.41 E-value=1.1e+02 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGL 96 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~l 96 (579)
-+.|-.+|..+++||..|++....|+.-.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999999998888877533
No 74
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.87 E-value=2.9e+02 Score=22.72 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 21 RKMALLEDVDKLKRKLRHEENVHRALERAF 50 (579)
Q Consensus 21 ~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (579)
.-.+++.++.+|+..|+.+...|.-|+.-.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~ 44 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQN 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999853
No 75
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.64 E-value=64 Score=26.49 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
.+.+|-.|=+.|+.+|..|++++..|+.-|.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777665444
No 76
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=24.41 E-value=1e+02 Score=31.69 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 64 LPPYTLELLAEVAVLEEEVVRLEEQVVNFRQ 94 (579)
Q Consensus 64 lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~ 94 (579)
+|.+++.|-.++..|++.|.+||.+|..+..
T Consensus 26 ~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 26 VAGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp THHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888876433
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.28 E-value=1.4e+02 Score=23.14 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008059 70 ELLAEVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 70 eLl~Eia~lE~eV~~LE~~v~~ 91 (579)
+|-.++..|+.+-..|..+|..
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433333
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.59 E-value=1e+02 Score=33.46 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
+.=.+|.++-..|+.++++=++-|..+.+.++.....-......-...+.+|++|+..|-++|..||+++..+..+|...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666655566666665554210000000000113678999999999999999999999988888866
Q ss_pred H
Q 008059 100 A 100 (579)
Q Consensus 100 ~ 100 (579)
.
T Consensus 150 l 150 (501)
T 1wle_A 150 A 150 (501)
T ss_dssp H
T ss_pred H
Confidence 4
No 79
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.39 E-value=96 Score=23.42 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008059 75 VAVLEEEVVRLEEQVVNFRQGLYQEAV 101 (579)
Q Consensus 75 ia~lE~eV~~LE~~v~~l~~~l~~e~~ 101 (579)
-.-.|-.|.+||+.|+.|-..|+.+..
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344578888888888888888887753
No 80
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.06 E-value=1.4e+02 Score=22.91 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~ 91 (579)
.+|-.++..||.+-..|..+|..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 81
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.81 E-value=1.4e+02 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLEEQVVNFRQ 94 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~~l~~ 94 (579)
..|-.+|..+++||..|.+....|+-
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888877654
No 82
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.61 E-value=3.9e+02 Score=23.37 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTL-ELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~-eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
.|..-|..|+-+|+.-..++..||+.+.. +. ..=.++..+...|..||..+..+|.++-++
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e---------------~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEE---------------TKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888999999999999999998732 11 112245555566666666666666555443
No 83
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.06 E-value=1.1e+02 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
-..||+...-.|.||..|..++.+|+..|...
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999988643
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.99 E-value=1.6e+02 Score=22.42 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGL 96 (579)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l 96 (579)
.+.+|=.|-..|..+|..|+.++..|+..|
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666554
No 85
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.89 E-value=89 Score=23.74 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 68 TLELLAEVAVLEEEVVRLEEQVVNFR 93 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~ 93 (579)
+.+|=.+|+.||.|-..|..++..|+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666655555544
No 86
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.60 E-value=42 Score=22.39 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 008059 75 VAVLEEEVVRLEEQV 89 (579)
Q Consensus 75 ia~lE~eV~~LE~~v 89 (579)
||.||..|+-|||+-
T Consensus 2 iaaleqkiaaleqkc 16 (32)
T 4g1a_A 2 IAALEQKIAALEQKC 16 (32)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 455666666665543
No 87
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.30 E-value=63 Score=24.96 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008059 69 LELLAEVAVLEEEVVRLEEQVV 90 (579)
Q Consensus 69 ~eLl~Eia~lE~eV~~LE~~v~ 90 (579)
.+|-.+|..|+.||..|.+.++
T Consensus 39 ~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 39 SELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655553
No 88
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.81 E-value=2e+02 Score=25.78 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008059 61 PPYLPPYTLELLAEVAVLEEEVVRLEEQVVNF 92 (579)
Q Consensus 61 ~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l 92 (579)
|.-+|..+..|+.|+..+|.|+..|.+++...
T Consensus 27 ~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 27 PAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888888888888777663
No 89
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=20.05 E-value=1.7e+02 Score=21.45 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 22 KMALLEDVDKLKRKLRHEENVHRALERAF 50 (579)
Q Consensus 22 r~~LeqeV~~Lq~~L~~E~~~r~~Le~al 50 (579)
=.+|--.|.+|-+||.++..-|.+|.+-|
T Consensus 6 cmslasqvvkltkql~eqt~~rv~lq~ql 34 (48)
T 2kes_A 6 CMSLASQVVKLTKQLKEQTVERVTLQNQL 34 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999988765
Done!