Query 008059
Match_columns 579
No_of_seqs 264 out of 554
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 17:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008059.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008059hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 67.4 16 0.0012 29.2 9.6 71 20-100 28-98 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 47.1 22 0.0016 28.3 6.9 76 24-99 19-98 (107)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 26.9 1E+02 0.0075 22.0 7.6 62 25-91 2-64 (66)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 20.9 66 0.0048 23.8 5.1 30 68-97 49-78 (79)
5 d2azeb1 e.63.1.2 (B:201-301) T 20.3 70 0.0051 25.4 5.3 32 67-98 2-33 (101)
6 d1cxzb_ a.2.6.1 (B:) Protein k 17.8 2E+02 0.015 22.0 7.5 64 19-97 17-80 (86)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 15.8 1.1E+02 0.0081 22.9 5.4 21 73-93 52-72 (88)
8 d1v74b_ a.24.20.1 (B:) Colicin 13.7 42 0.003 26.2 2.1 17 275-291 38-54 (87)
9 d2bz1a1 c.144.1.1 (A:1-174) GT 12.1 59 0.0043 28.0 3.0 46 460-505 26-85 (174)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 10.8 1.4E+02 0.01 23.7 4.9 31 67-97 2-32 (133)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=67.39 E-value=16 Score=29.16 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 20 ERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 20 ~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
+.=.+|.++...|+.++++=++-|..+.+.++... +..+.+|++|+..|-.+|..||+++..+..+++.-
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~----------~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----------PEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777888888876421 35678999999999999999999999988888765
Q ss_pred H
Q 008059 100 A 100 (579)
Q Consensus 100 ~ 100 (579)
.
T Consensus 98 l 98 (110)
T d1seta1 98 L 98 (110)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=47.12 E-value=22 Score=28.25 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008059 24 ALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLA----EVAVLEEEVVRLEEQVVNFRQGLYQE 99 (579)
Q Consensus 24 ~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~----Eia~lE~eV~~LE~~v~~l~~~l~~e 99 (579)
.+.+.+.+|+.++++=..+-..|+..=......-...|.+++....+++. .+..++.+|..|++++..+...+..=
T Consensus 19 ~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555555555543222222223344556655555554 46789999999999999988777643
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.89 E-value=1e+02 Score=21.96 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008059 25 LLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYT-LELLAEVAVLEEEVVRLEEQVVN 91 (579)
Q Consensus 25 LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~-~eLl~Eia~lE~eV~~LE~~v~~ 91 (579)
++.|+.+|+++|..=..--..++.-|+.+.- . .--|+.+ .+--.-++.++.++..|++.+..
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F-~----~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGF-R----EKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTH-H----HHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHH-H----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999988888888888888865421 1 1124333 33334466677777777777765
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91 E-value=66 Score=23.78 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 68 TLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 68 ~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
++.|-.++..++.++..|..+...|+.+|-
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556677777777777777777666653
No 5
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.33 E-value=70 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008059 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLYQ 98 (579)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~~ 98 (579)
+.+.|=+||+-|+++-..|.+++..++.+|..
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998888864
No 6
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.79 E-value=2e+02 Score=22.03 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 19 RERKMALLEDVDKLKRKLRHEENVHRALERAFTRPLGSLPRLPPYLPPYTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 19 ~~~r~~LeqeV~~Lq~~L~~E~~~r~~Le~al~~~~~~~~~~~~~lp~~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
...+..||..-+.|++++++|-.|+.--|+.+.- |..-=.-.+.||.|+..--.++..|+.+|-
T Consensus 17 ~~~q~~le~~r~~lr~eI~KELKIKeGAENL~~a---------------ttd~kk~~~~V~~eL~~sN~kL~~L~~eL~ 80 (86)
T d1cxzb_ 17 PGVQQQLELERERLRREIRKELKLKEGAENLRRA---------------TTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHH---------------HccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999877765521 000000123588888888888888888775
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=1.1e+02 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008059 73 AEVAVLEEEVVRLEEQVVNFR 93 (579)
Q Consensus 73 ~Eia~lE~eV~~LE~~v~~l~ 93 (579)
.-|-.|+.++..|+.++..|+
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~ 72 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 8
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=13.70 E-value=42 Score=26.21 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.2
Q ss_pred ccchHHHHhHHHHHHHH
Q 008059 275 NKVSEDTVRCLSSIFVR 291 (579)
Q Consensus 275 n~lSE~mvkC~~~i~~~ 291 (579)
++++.++-.|++.|||-
T Consensus 38 ~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 38 KDLSPNILNCGEELFMA 54 (87)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHH
Confidence 57788899999999996
No 9
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=12.10 E-value=59 Score=27.96 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=30.1
Q ss_pred CCCCeeeEeeccCCCC--CCC-ccccchhhH-----------HHHHHHHHHHHHhhccCc
Q 008059 460 WSEPLVTFALCCGSWS--SPA-VRVYTASQV-----------EEELEAAKKDYLQAAIGI 505 (579)
Q Consensus 460 ~~dPrVhFAL~cGs~S--sP~-lRvYta~~v-----------~~qLe~A~~efl~a~v~v 505 (579)
..|..+||||..|.++ .|+ |||-....+ ..+|+.|.+..-....||
T Consensus 26 ~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~Gv 85 (174)
T d2bz1a1 26 LATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGI 85 (174)
T ss_dssp TTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSEE
T ss_pred CCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCcE
Confidence 4577899999999765 334 587544333 357777777666655444
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.85 E-value=1.4e+02 Score=23.72 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008059 67 YTLELLAEVAVLEEEVVRLEEQVVNFRQGLY 97 (579)
Q Consensus 67 ~~~eLl~Eia~lE~eV~~LE~~v~~l~~~l~ 97 (579)
+..||.+.+.+++.++..|.+++..|+..+-
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999776665
Done!