Query 008060
Match_columns 579
No_of_seqs 392 out of 1319
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 18:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 6.2E-42 1.3E-46 354.7 42.0 449 28-560 8-472 (485)
2 TIGR01299 synapt_SV2 synaptic 100.0 2E-40 4.3E-45 364.8 41.1 436 17-549 153-740 (742)
3 TIGR00887 2A0109 phosphate:H+ 100.0 1.1E-39 2.4E-44 352.6 40.0 441 21-555 6-501 (502)
4 PRK10077 xylE D-xylose transpo 100.0 1.1E-38 2.5E-43 343.3 45.5 436 25-560 6-475 (479)
5 KOG0254 Predicted transporter 100.0 5.9E-38 1.3E-42 339.5 41.4 451 28-560 42-501 (513)
6 TIGR00879 SP MFS transporter, 100.0 1.2E-37 2.6E-42 334.0 41.7 442 26-551 23-479 (481)
7 COG2271 UhpC Sugar phosphate p 100.0 1.3E-37 2.8E-42 308.4 28.4 401 26-543 24-435 (448)
8 PRK09556 uhpT sugar phosphate 100.0 4.1E-36 8.8E-41 322.0 32.9 413 14-540 12-447 (467)
9 PRK10642 proline/glycine betai 100.0 4.1E-35 8.8E-40 316.0 40.1 402 30-549 15-436 (490)
10 PRK11663 regulatory protein Uh 100.0 1.4E-35 3.1E-40 314.7 34.8 406 27-548 19-430 (434)
11 TIGR00898 2A0119 cation transp 100.0 8.8E-36 1.9E-40 323.0 33.1 394 52-551 110-503 (505)
12 COG2814 AraJ Arabinose efflux 100.0 9.1E-35 2E-39 292.7 36.8 378 27-543 9-387 (394)
13 PRK12307 putative sialic acid 100.0 2.8E-34 6.1E-39 304.4 37.7 377 25-523 12-389 (426)
14 TIGR02332 HpaX 4-hydroxyphenyl 100.0 1.2E-34 2.6E-39 305.4 33.6 398 27-532 4-411 (412)
15 PRK03545 putative arabinose tr 100.0 7.7E-34 1.7E-38 297.5 38.1 374 28-542 6-380 (390)
16 PRK10406 alpha-ketoglutarate t 100.0 2.1E-33 4.6E-38 298.0 39.6 384 27-540 18-422 (432)
17 TIGR00891 2A0112 putative sial 100.0 1.5E-33 3.2E-38 296.2 38.1 393 25-526 6-400 (405)
18 PRK11551 putative 3-hydroxyphe 100.0 1.4E-33 3E-38 297.2 36.3 385 25-541 9-395 (406)
19 PF00083 Sugar_tr: Sugar (and 100.0 2.6E-40 5.5E-45 353.3 -18.9 431 37-556 6-450 (451)
20 KOG0253 Synaptic vesicle trans 100.0 1E-32 2.2E-37 266.2 33.8 434 17-550 64-527 (528)
21 PRK09705 cynX putative cyanate 100.0 6.1E-33 1.3E-37 290.8 35.1 379 28-549 7-388 (393)
22 PRK11273 glpT sn-glycerol-3-ph 100.0 1.1E-32 2.4E-37 294.2 37.2 400 26-541 24-434 (452)
23 PRK09952 shikimate transporter 100.0 2.9E-32 6.3E-37 289.6 39.6 391 27-545 18-435 (438)
24 PRK03893 putative sialic acid 100.0 1.7E-32 3.7E-37 296.6 37.6 415 27-533 16-444 (496)
25 PRK14995 methyl viologen resis 100.0 2.9E-32 6.2E-37 294.1 38.6 392 28-517 3-413 (495)
26 TIGR00903 2A0129 major facilit 100.0 9.2E-33 2E-37 285.6 32.6 355 43-539 3-362 (368)
27 PRK15075 citrate-proton sympor 100.0 6.3E-32 1.4E-36 286.9 39.3 364 28-521 12-398 (434)
28 KOG0252 Inorganic phosphate tr 100.0 3.6E-34 7.9E-39 284.8 20.3 440 26-560 36-515 (538)
29 TIGR00893 2A0114 d-galactonate 100.0 1.2E-32 2.6E-37 287.4 31.3 392 40-540 3-397 (399)
30 TIGR00890 2A0111 Oxalate/Forma 100.0 1.4E-32 3E-37 285.5 31.2 371 32-536 5-376 (377)
31 PRK10091 MFS transport protein 100.0 3.6E-31 7.7E-36 276.5 35.7 372 32-543 4-377 (382)
32 TIGR00712 glpT glycerol-3-phos 100.0 1.7E-31 3.8E-36 283.9 33.4 406 29-546 25-437 (438)
33 PRK03699 putative transporter; 100.0 2.9E-31 6.4E-36 278.3 33.7 376 27-540 3-378 (394)
34 TIGR00894 2A0114euk Na(+)-depe 100.0 9.1E-32 2E-36 288.5 29.8 400 24-540 12-448 (465)
35 PLN00028 nitrate transmembrane 100.0 4.1E-31 8.9E-36 283.4 34.4 385 29-541 34-432 (476)
36 PRK15034 nitrate/nitrite trans 100.0 2.5E-30 5.5E-35 269.7 38.7 380 27-543 30-455 (462)
37 PRK15402 multidrug efflux syst 100.0 1.2E-30 2.6E-35 274.9 35.7 388 26-543 8-396 (406)
38 PRK10489 enterobactin exporter 100.0 8.5E-32 1.8E-36 284.6 26.7 381 40-555 26-412 (417)
39 TIGR00892 2A0113 monocarboxyla 100.0 9.8E-32 2.1E-36 286.7 27.2 400 26-538 14-417 (455)
40 TIGR00895 2A0115 benzoate tran 100.0 1.2E-30 2.5E-35 273.3 34.6 386 24-514 10-397 (398)
41 PRK10213 nepI ribonucleoside t 100.0 3.4E-30 7.3E-35 269.9 37.9 367 29-537 18-386 (394)
42 PRK05122 major facilitator sup 100.0 1E-30 2.2E-35 274.8 33.5 365 31-541 15-388 (399)
43 PRK03633 putative MFS family t 100.0 8.9E-30 1.9E-34 265.9 36.9 361 33-538 8-368 (381)
44 KOG0255 Synaptic vesicle trans 100.0 1.7E-30 3.8E-35 282.4 32.7 429 20-555 74-505 (521)
45 TIGR00711 efflux_EmrB drug res 100.0 1.5E-30 3.3E-35 280.5 31.6 391 31-518 2-411 (485)
46 PRK12382 putative transporter; 100.0 7.5E-30 1.6E-34 267.5 35.9 364 33-542 17-389 (392)
47 TIGR00881 2A0104 phosphoglycer 100.0 4.3E-31 9.3E-36 274.5 26.1 375 39-524 3-379 (379)
48 PRK10504 putative transporter; 100.0 1.1E-29 2.4E-34 272.9 37.4 391 32-521 11-419 (471)
49 TIGR00710 efflux_Bcr_CflA drug 100.0 7.4E-30 1.6E-34 266.4 34.4 284 34-362 8-292 (385)
50 PRK09874 drug efflux system pr 100.0 5.3E-29 1.1E-33 262.3 37.2 375 35-542 18-398 (408)
51 TIGR00900 2A0121 H+ Antiporter 100.0 1.2E-29 2.6E-34 262.4 31.0 354 36-519 4-365 (365)
52 COG2223 NarK Nitrate/nitrite t 100.0 3.7E-29 8E-34 249.0 30.9 387 26-543 9-402 (417)
53 PRK10473 multidrug efflux syst 100.0 7.2E-29 1.6E-33 260.1 34.9 283 34-362 6-289 (392)
54 TIGR00899 2A0120 sugar efflux 100.0 7.1E-29 1.5E-33 258.1 34.3 363 38-539 4-371 (375)
55 PRK15403 multidrug efflux syst 100.0 1.3E-28 2.9E-33 259.4 36.4 281 32-356 17-298 (413)
56 TIGR00897 2A0118 polyol permea 100.0 2.1E-28 4.6E-33 257.3 36.3 374 37-540 19-399 (402)
57 PRK10133 L-fucose transporter; 100.0 2E-28 4.3E-33 259.6 35.5 376 26-537 21-428 (438)
58 cd06174 MFS The Major Facilita 100.0 2E-28 4.3E-33 251.4 34.2 346 35-539 3-349 (352)
59 PRK11043 putative transporter; 100.0 4E-28 8.7E-33 255.2 36.5 352 36-522 11-362 (401)
60 TIGR00883 2A0106 metabolite-pr 100.0 2.7E-28 5.8E-33 254.9 33.8 363 41-532 3-391 (394)
61 KOG1330 Sugar transporter/spin 100.0 1.8E-30 3.9E-35 260.0 16.1 280 25-339 27-310 (493)
62 PF07690 MFS_1: Major Facilita 100.0 2.4E-29 5.1E-34 258.9 24.8 347 37-508 2-352 (352)
63 KOG2532 Permease of the major 100.0 6.3E-29 1.4E-33 261.0 27.3 365 59-541 66-446 (466)
64 PRK11195 lysophospholipid tran 100.0 1.7E-27 3.8E-32 249.3 35.1 370 36-540 8-378 (393)
65 PRK11102 bicyclomycin/multidru 100.0 9.7E-28 2.1E-32 250.0 32.1 268 45-355 5-273 (377)
66 PRK11010 ampG muropeptide tran 100.0 2.2E-27 4.8E-32 255.1 34.7 375 36-541 17-402 (491)
67 PRK11646 multidrug resistance 100.0 4.2E-27 9.2E-32 247.0 34.5 358 40-537 19-383 (400)
68 KOG2533 Permease of the major 100.0 1.5E-28 3.3E-33 258.5 23.1 298 27-349 41-350 (495)
69 PRK11652 emrD multidrug resist 100.0 7.8E-27 1.7E-31 244.8 35.4 353 30-517 7-360 (394)
70 TIGR00885 fucP L-fucose:H+ sym 100.0 5.9E-27 1.3E-31 246.2 33.8 360 33-531 5-401 (410)
71 PRK10054 putative transporter; 100.0 4.1E-27 8.9E-32 246.7 32.0 363 38-538 14-380 (395)
72 PRK15011 sugar efflux transpor 100.0 3.1E-26 6.7E-31 240.1 35.8 364 38-544 22-392 (393)
73 TIGR00902 2A0127 phenyl propri 100.0 1.5E-26 3.2E-31 241.6 33.0 361 36-537 9-374 (382)
74 TIGR00886 2A0108 nitrite extru 100.0 4.5E-27 9.8E-32 243.8 28.9 293 35-361 5-310 (366)
75 TIGR00896 CynX cyanate transpo 100.0 7.8E-27 1.7E-31 241.3 29.0 337 42-519 11-350 (355)
76 TIGR00805 oat sodium-independe 100.0 2.6E-26 5.6E-31 252.5 29.7 307 32-358 34-415 (633)
77 TIGR00889 2A0110 nucleoside tr 100.0 5.9E-26 1.3E-30 239.5 31.3 378 36-548 7-408 (418)
78 PF06609 TRI12: Fungal trichot 100.0 5.1E-25 1.1E-29 234.4 38.2 323 30-362 43-400 (599)
79 PRK09528 lacY galactoside perm 99.9 1.7E-25 3.6E-30 236.8 32.4 374 40-544 19-405 (420)
80 PRK11128 putative 3-phenylprop 99.9 2.8E-25 6.1E-30 232.0 32.7 357 40-537 13-374 (382)
81 PRK11902 ampG muropeptide tran 99.9 1E-24 2.2E-29 229.4 35.2 371 37-540 5-388 (402)
82 PRK06814 acylglycerophosphoeth 99.9 2.3E-25 4.9E-30 264.2 33.9 396 32-537 16-417 (1140)
83 PRK08633 2-acyl-glycerophospho 99.9 5.3E-25 1.1E-29 261.7 35.1 369 47-540 26-408 (1146)
84 TIGR00882 2A0105 oligosacchari 99.9 2E-24 4.2E-29 226.8 33.9 373 36-540 7-393 (396)
85 KOG2504 Monocarboxylate transp 99.9 2.5E-26 5.4E-31 244.3 19.5 414 25-543 40-476 (509)
86 COG0738 FucP Fucose permease [ 99.9 3E-24 6.5E-29 212.5 30.1 369 32-538 14-405 (422)
87 KOG3764 Vesicular amine transp 99.9 1.6E-26 3.4E-31 226.7 10.3 382 28-540 18-452 (464)
88 TIGR00792 gph sugar (Glycoside 99.9 6.4E-24 1.4E-28 225.8 29.1 337 52-521 21-384 (437)
89 TIGR00901 2A0125 AmpG-related 99.9 1.6E-23 3.4E-28 216.6 28.5 273 47-361 4-294 (356)
90 PF05977 MFS_3: Transmembrane 99.9 2E-23 4.3E-28 223.2 30.0 373 35-539 14-391 (524)
91 KOG2615 Permease of the major 99.9 2E-24 4.3E-29 210.8 20.2 164 48-212 42-216 (451)
92 COG2807 CynX Cyanate permease 99.9 6.3E-23 1.4E-27 200.1 29.9 370 30-540 11-383 (395)
93 TIGR00924 yjdL_sub1_fam amino 99.9 9.9E-23 2.2E-27 218.1 33.0 417 34-543 13-469 (475)
94 TIGR00806 rfc RFC reduced fola 99.9 3E-23 6.5E-28 212.5 26.4 301 36-350 32-336 (511)
95 TIGR02718 sider_RhtX_FptX side 99.9 2.9E-22 6.3E-27 209.9 34.7 374 33-537 3-386 (390)
96 PRK10207 dipeptide/tripeptide 99.9 1.2E-22 2.6E-27 217.6 31.9 415 33-541 16-475 (489)
97 PTZ00207 hypothetical protein; 99.9 3E-22 6.6E-27 214.7 31.6 417 25-547 22-557 (591)
98 TIGR01301 GPH_sucrose GPH fami 99.9 9.7E-21 2.1E-25 199.3 34.9 413 36-547 9-476 (477)
99 PF03825 Nuc_H_symport: Nucleo 99.9 6.3E-20 1.4E-24 190.7 34.0 376 38-546 9-399 (400)
100 PRK09584 tppB putative tripept 99.9 4.5E-20 9.8E-25 198.8 32.1 163 37-203 27-194 (500)
101 PRK09669 putative symporter Ya 99.9 1.9E-19 4.2E-24 191.8 30.0 337 51-521 30-392 (444)
102 PRK10429 melibiose:sodium symp 99.9 4E-19 8.6E-24 190.8 29.7 357 38-520 13-396 (473)
103 TIGR00788 fbt folate/biopterin 99.9 9.5E-20 2.1E-24 194.6 24.3 404 32-544 27-447 (468)
104 KOG2563 Permease of the major 99.8 1.4E-18 2.9E-23 174.5 29.8 400 24-550 38-458 (480)
105 PF11700 ATG22: Vacuole efflux 99.8 3.2E-17 6.9E-22 173.8 37.2 360 70-547 71-472 (477)
106 PRK15462 dipeptide/tripeptide 99.8 1.7E-17 3.7E-22 175.5 34.8 167 35-205 13-184 (493)
107 PF13347 MFS_2: MFS/sugar tran 99.8 3.5E-18 7.5E-23 181.3 28.7 338 52-521 23-388 (428)
108 PF01306 LacY_symp: LacY proto 99.8 8.9E-19 1.9E-23 179.0 22.7 378 38-547 14-405 (412)
109 PRK09848 glucuronide transport 99.8 9.6E-18 2.1E-22 179.0 30.1 349 38-520 15-391 (448)
110 KOG4686 Predicted sugar transp 99.8 6.5E-20 1.4E-24 171.8 11.1 384 27-540 40-441 (459)
111 PRK11462 putative transporter; 99.8 4.2E-17 9E-22 174.1 34.2 255 53-354 32-305 (460)
112 KOG2325 Predicted transporter/ 99.8 5.4E-18 1.2E-22 175.1 23.1 416 26-538 29-471 (488)
113 KOG3626 Organic anion transpor 99.8 4.2E-17 9E-22 175.0 27.0 454 31-518 97-650 (735)
114 TIGR01272 gluP glucose/galacto 99.8 5.4E-17 1.2E-21 164.0 24.1 277 118-528 6-301 (310)
115 COG2211 MelB Na+/melibiose sym 99.8 1.1E-15 2.4E-20 157.9 33.4 339 53-520 35-399 (467)
116 COG2270 Permeases of the major 99.7 1.1E-14 2.4E-19 145.9 30.1 354 70-549 59-435 (438)
117 COG3104 PTR2 Dipeptide/tripept 99.7 2.4E-14 5.3E-19 146.6 27.1 173 33-209 23-205 (498)
118 PF03137 OATP: Organic Anion T 99.7 5E-18 1.1E-22 182.4 -0.3 310 33-358 5-390 (539)
119 PRK10642 proline/glycine betai 99.7 3E-15 6.5E-20 161.6 20.4 181 50-233 269-458 (490)
120 PF03209 PUCC: PUCC protein; 99.6 2.1E-12 4.6E-17 130.0 31.3 333 56-517 5-363 (403)
121 KOG2816 Predicted transporter 99.6 4.1E-13 8.9E-18 141.0 23.1 368 28-517 19-392 (463)
122 TIGR00880 2_A_01_02 Multidrug 99.5 4E-14 8.7E-19 124.6 11.2 136 75-211 4-140 (141)
123 PF03092 BT1: BT1 family; Int 99.5 4.7E-13 1E-17 141.4 17.5 383 51-546 10-416 (433)
124 TIGR00889 2A0110 nucleoside tr 99.5 3.9E-13 8.5E-18 142.0 15.8 161 52-212 229-405 (418)
125 TIGR01299 synapt_SV2 synaptic 99.5 1.1E-12 2.5E-17 145.5 18.5 140 72-213 598-737 (742)
126 PRK09528 lacY galactoside perm 99.5 9.6E-13 2.1E-17 139.3 16.3 140 72-212 265-406 (420)
127 PRK11551 putative 3-hydroxyphe 99.4 3.2E-12 7E-17 134.6 18.1 157 51-210 240-396 (406)
128 PRK15011 sugar efflux transpor 99.4 4.1E-12 8.9E-17 133.3 18.4 155 52-211 237-392 (393)
129 TIGR00890 2A0111 Oxalate/Forma 99.4 1.5E-12 3.2E-17 135.0 14.5 148 52-203 226-375 (377)
130 cd06174 MFS The Major Facilita 99.4 7.2E-12 1.6E-16 128.3 17.4 165 40-208 184-350 (352)
131 PRK05122 major facilitator sup 99.4 1.2E-11 2.6E-16 129.9 17.7 155 52-212 237-391 (399)
132 TIGR00895 2A0115 benzoate tran 99.4 2.2E-11 4.8E-16 127.2 19.2 170 286-546 27-196 (398)
133 PRK09874 drug efflux system pr 99.4 1.9E-11 4E-16 128.7 18.5 157 50-207 238-395 (408)
134 TIGR00892 2A0113 monocarboxyla 99.4 1.6E-11 3.5E-16 131.2 16.7 159 43-204 253-415 (455)
135 TIGR00902 2A0127 phenyl propri 99.4 2.5E-11 5.5E-16 126.8 17.8 155 47-207 221-376 (382)
136 TIGR00899 2A0120 sugar efflux 99.3 2.1E-11 4.6E-16 126.6 17.0 151 56-211 225-375 (375)
137 PF05631 DUF791: Protein of un 99.3 4.2E-10 9E-15 111.9 24.6 266 48-358 51-325 (354)
138 TIGR02332 HpaX 4-hydroxyphenyl 99.3 5.6E-11 1.2E-15 125.4 19.7 179 278-547 10-194 (412)
139 PRK10054 putative transporter; 99.3 3.9E-11 8.5E-16 125.9 18.4 171 285-546 16-186 (395)
140 PRK11663 regulatory protein Uh 99.3 2.4E-11 5.3E-16 129.1 16.4 170 285-545 32-201 (434)
141 PRK10489 enterobactin exporter 99.3 5.8E-11 1.3E-15 125.6 19.1 158 51-212 243-402 (417)
142 PRK12382 putative transporter; 99.3 3.7E-11 8E-16 125.9 17.1 150 52-207 237-386 (392)
143 TIGR00893 2A0114 d-galactonate 99.3 3.1E-11 6.7E-16 125.7 16.4 164 293-547 11-174 (399)
144 PRK09556 uhpT sugar phosphate 99.3 7.3E-11 1.6E-15 126.7 17.5 170 35-208 262-447 (467)
145 PRK03545 putative arabinose tr 99.3 1.4E-10 3.1E-15 121.5 19.3 149 53-207 228-377 (390)
146 PF01770 Folate_carrier: Reduc 99.3 1.5E-09 3.2E-14 111.0 25.7 311 32-352 6-325 (412)
147 TIGR00710 efflux_Bcr_CflA drug 99.3 1.1E-10 2.3E-15 121.8 18.2 168 290-548 19-186 (385)
148 TIGR00883 2A0106 metabolite-pr 99.3 2.7E-11 5.9E-16 126.3 13.2 157 41-200 229-391 (394)
149 TIGR00879 SP MFS transporter, 99.3 6.3E-11 1.4E-15 126.9 16.2 180 30-213 283-474 (481)
150 TIGR00897 2A0118 polyol permea 99.3 1.7E-10 3.6E-15 121.5 19.0 157 47-209 238-400 (402)
151 PRK09705 cynX putative cyanate 99.3 1.4E-10 3E-15 121.7 18.0 162 47-213 221-385 (393)
152 PRK03699 putative transporter; 99.3 1.2E-10 2.5E-15 122.3 16.8 161 47-212 221-382 (394)
153 COG2271 UhpC Sugar phosphate p 99.3 1.1E-10 2.3E-15 117.4 15.3 178 277-545 30-209 (448)
154 PRK10213 nepI ribonucleoside t 99.3 1.7E-10 3.7E-15 121.0 17.3 162 294-546 38-199 (394)
155 PRK03633 putative MFS family t 99.3 2E-10 4.3E-15 120.0 17.7 150 52-208 221-370 (381)
156 PRK09952 shikimate transporter 99.2 3E-10 6.5E-15 120.9 19.2 154 56-212 276-435 (438)
157 PRK03893 putative sialic acid 99.2 7.3E-11 1.6E-15 127.7 14.7 146 50-199 294-442 (496)
158 PRK10473 multidrug efflux syst 99.2 2.8E-10 6E-15 119.3 18.0 175 283-548 10-184 (392)
159 COG2814 AraJ Arabinose efflux 99.2 3.1E-10 6.7E-15 115.4 17.5 170 283-543 20-189 (394)
160 PRK15462 dipeptide/tripeptide 99.2 4.3E-10 9.3E-15 119.4 19.4 162 289-539 22-186 (493)
161 TIGR00881 2A0104 phosphoglycer 99.2 4.7E-11 1E-15 123.8 11.9 165 291-546 10-175 (379)
162 PRK10077 xylE D-xylose transpo 99.2 4.3E-10 9.3E-15 121.1 19.5 160 49-212 289-460 (479)
163 TIGR00711 efflux_EmrB drug res 99.2 1.1E-10 2.3E-15 126.0 14.0 174 283-547 9-182 (485)
164 TIGR00891 2A0112 putative sial 99.2 6E-10 1.3E-14 116.8 19.3 172 283-546 19-192 (405)
165 TIGR00900 2A0121 H+ Antiporter 99.2 2.4E-10 5.2E-15 117.9 15.7 131 52-185 232-364 (365)
166 PRK11128 putative 3-phenylprop 99.2 4.6E-10 9.9E-15 117.3 17.9 147 53-205 227-374 (382)
167 PRK11646 multidrug resistance 99.2 5.7E-10 1.2E-14 117.3 18.6 167 288-545 22-188 (400)
168 PF07690 MFS_1: Major Facilita 99.2 1.7E-10 3.6E-15 118.5 13.7 167 289-545 9-175 (352)
169 PRK11010 ampG muropeptide tran 99.2 5E-09 1.1E-13 113.0 25.2 156 53-212 245-405 (491)
170 TIGR00712 glpT glycerol-3-phos 99.2 1.9E-10 4.1E-15 122.5 14.0 164 295-546 46-210 (438)
171 PRK10504 putative transporter; 99.2 6.5E-10 1.4E-14 119.5 18.0 170 285-545 19-188 (471)
172 PRK10091 MFS transport protein 99.2 5.1E-10 1.1E-14 116.9 16.7 166 291-547 18-183 (382)
173 PLN00028 nitrate transmembrane 99.2 1.1E-09 2.4E-14 117.8 19.4 167 285-543 45-220 (476)
174 PRK15402 multidrug efflux syst 99.2 1.1E-09 2.3E-14 115.5 18.9 165 292-547 29-193 (406)
175 TIGR00924 yjdL_sub1_fam amino 99.2 1.1E-09 2.4E-14 117.6 19.2 163 286-538 20-188 (475)
176 PRK15403 multidrug efflux syst 99.2 7.3E-10 1.6E-14 116.9 17.6 158 299-547 39-196 (413)
177 PRK14995 methyl viologen resis 99.2 4.2E-10 9.2E-15 121.7 16.0 177 279-546 9-186 (495)
178 PRK11102 bicyclomycin/multidru 99.2 3.5E-10 7.5E-15 117.8 14.7 162 294-546 9-170 (377)
179 TIGR00882 2A0105 oligosacchari 99.2 1.2E-09 2.6E-14 114.7 18.4 133 72-205 257-390 (396)
180 TIGR00903 2A0129 major facilit 99.2 6.8E-10 1.5E-14 115.1 16.0 164 292-547 7-170 (368)
181 KOG3098 Uncharacterized conser 99.2 2.4E-08 5.1E-13 103.9 27.0 252 75-364 56-334 (461)
182 PF05977 MFS_3: Transmembrane 99.2 1.1E-09 2.4E-14 117.7 18.0 152 50-205 237-389 (524)
183 PF11700 ATG22: Vacuole efflux 99.2 1.6E-09 3.4E-14 115.3 18.7 163 47-212 298-470 (477)
184 TIGR00887 2A0109 phosphate:H+ 99.1 1.3E-09 2.7E-14 118.3 18.2 164 50-213 307-492 (502)
185 PRK11273 glpT sn-glycerol-3-ph 99.1 1.3E-09 2.9E-14 116.5 17.9 157 48-208 270-433 (452)
186 PRK11652 emrD multidrug resist 99.1 2.5E-09 5.3E-14 112.2 19.1 163 294-547 26-188 (394)
187 TIGR00886 2A0108 nitrite extru 99.1 2.2E-09 4.8E-14 111.1 18.4 169 286-545 11-191 (366)
188 PRK12307 putative sialic acid 99.1 2E-09 4.4E-14 114.0 18.0 136 51-190 251-388 (426)
189 KOG0569 Permease of the major 99.1 4.4E-09 9.5E-14 110.3 19.5 180 28-212 267-457 (485)
190 TIGR00792 gph sugar (Glycoside 99.1 4.3E-09 9.4E-14 111.9 19.7 115 72-186 260-382 (437)
191 PRK09584 tppB putative tripept 99.1 3.9E-09 8.6E-14 114.0 19.1 160 288-536 33-195 (500)
192 PRK10207 dipeptide/tripeptide 99.1 4.7E-09 1E-13 112.9 19.2 160 288-536 26-188 (489)
193 PRK11043 putative transporter; 99.1 7.5E-09 1.6E-13 108.8 20.1 153 299-542 29-181 (401)
194 TIGR00894 2A0114euk Na(+)-depe 99.1 1.9E-09 4.2E-14 115.7 15.1 148 309-544 73-221 (465)
195 TIGR02718 sider_RhtX_FptX side 99.1 9.7E-09 2.1E-13 107.6 19.3 149 53-205 230-386 (390)
196 TIGR00898 2A0119 cation transp 99.1 3.7E-09 8E-14 114.7 16.7 137 74-213 360-498 (505)
197 PRK15075 citrate-proton sympor 99.0 9.5E-09 2.1E-13 109.3 18.6 139 47-189 254-398 (434)
198 COG2223 NarK Nitrate/nitrite t 99.0 1.3E-08 2.8E-13 102.7 17.3 167 288-544 26-195 (417)
199 PRK10406 alpha-ketoglutarate t 99.0 1.5E-08 3.3E-13 107.7 19.0 157 51-211 263-425 (432)
200 KOG2504 Monocarboxylate transp 99.0 3.1E-09 6.7E-14 113.8 13.4 177 31-210 298-476 (509)
201 COG2270 Permeases of the major 99.0 6E-09 1.3E-13 105.1 13.9 177 32-212 255-431 (438)
202 PRK15034 nitrate/nitrite trans 99.0 3E-08 6.6E-13 104.3 19.7 178 281-545 39-235 (462)
203 PF06813 Nodulin-like: Nodulin 99.0 1.6E-08 3.5E-13 97.4 16.3 178 29-213 1-185 (250)
204 PRK11902 ampG muropeptide tran 99.0 2.4E-08 5.3E-13 105.0 18.9 147 55-209 234-389 (402)
205 TIGR00880 2_A_01_02 Multidrug 99.0 3.9E-09 8.5E-14 92.5 10.6 135 321-545 7-141 (141)
206 TIGR00896 CynX cyanate transpo 99.0 8.1E-09 1.7E-13 106.7 14.3 137 50-190 216-354 (355)
207 TIGR00885 fucP L-fucose:H+ sym 99.0 2.8E-08 6.1E-13 104.7 18.2 158 293-538 20-203 (410)
208 PRK08633 2-acyl-glycerophospho 99.0 1.3E-08 2.7E-13 121.8 17.4 144 55-201 257-401 (1146)
209 PF03825 Nuc_H_symport: Nucleo 99.0 1.9E-08 4.2E-13 104.9 16.6 170 40-212 216-398 (400)
210 TIGR01272 gluP glucose/galacto 98.9 3.4E-08 7.4E-13 99.9 17.7 130 61-197 173-302 (310)
211 KOG1330 Sugar transporter/spin 98.9 7.1E-10 1.5E-14 112.6 5.2 160 305-554 61-221 (493)
212 PF01306 LacY_symp: LacY proto 98.9 3.1E-08 6.7E-13 101.9 16.7 143 69-212 259-403 (412)
213 KOG3762 Predicted transporter 98.9 7.1E-09 1.5E-13 106.9 11.7 181 263-539 363-544 (618)
214 TIGR00901 2A0125 AmpG-related 98.9 3.3E-08 7.2E-13 102.1 16.4 75 473-547 101-183 (356)
215 KOG0637 Sucrose transporter an 98.9 2.3E-08 5.1E-13 101.4 14.2 146 33-181 34-202 (498)
216 KOG2615 Permease of the major 98.9 7.8E-09 1.7E-13 102.4 10.5 147 310-547 66-218 (451)
217 PRK06814 acylglycerophosphoeth 98.9 3.3E-08 7.1E-13 118.1 17.4 146 53-201 247-413 (1140)
218 PRK11195 lysophospholipid tran 98.8 1.7E-07 3.7E-12 98.3 18.5 143 56-204 231-374 (393)
219 TIGR00926 2A1704 Peptide:H+ sy 98.8 1.2E-06 2.7E-11 96.5 25.9 153 52-207 9-179 (654)
220 PRK09848 glucuronide transport 98.8 2E-07 4.3E-12 99.6 19.1 130 53-185 250-389 (448)
221 PF06609 TRI12: Fungal trichot 98.8 2.8E-08 6.1E-13 106.9 12.5 153 296-541 64-216 (599)
222 COG0477 ProP Permeases of the 98.8 1.4E-07 3.1E-12 93.7 16.7 159 41-202 12-177 (338)
223 TIGR00805 oat sodium-independe 98.8 4E-08 8.6E-13 108.9 13.5 226 279-545 36-283 (633)
224 PRK09669 putative symporter Ya 98.8 4E-07 8.7E-12 97.1 19.6 115 72-186 267-390 (444)
225 PRK10133 L-fucose transporter; 98.8 2.9E-07 6.2E-12 97.9 18.3 139 58-202 287-425 (438)
226 PF06963 FPN1: Ferroportin1 (F 98.8 2.2E-05 4.8E-10 82.0 30.9 314 33-363 4-344 (432)
227 PF13347 MFS_2: MFS/sugar tran 98.7 9.2E-08 2E-12 101.5 13.6 143 40-186 234-386 (428)
228 KOG3764 Vesicular amine transp 98.7 1.4E-08 2.9E-13 101.3 6.6 150 310-549 104-254 (464)
229 PRK10429 melibiose:sodium symp 98.7 2.3E-07 4.9E-12 99.9 16.3 115 72-186 269-395 (473)
230 PTZ00207 hypothetical protein; 98.7 3.4E-07 7.4E-12 99.2 17.5 166 292-545 43-208 (591)
231 KOG4686 Predicted sugar transp 98.7 1.5E-07 3.2E-12 89.5 12.6 171 32-209 268-442 (459)
232 KOG0255 Synaptic vesicle trans 98.7 1.1E-07 2.5E-12 103.5 13.6 143 310-546 116-258 (521)
233 KOG0253 Synaptic vesicle trans 98.7 9E-08 1.9E-12 94.3 11.2 130 80-212 392-521 (528)
234 KOG3574 Acetyl-CoA transporter 98.7 1.7E-06 3.7E-11 85.7 19.5 144 29-178 29-189 (510)
235 TIGR01301 GPH_sucrose GPH fami 98.7 5.2E-07 1.1E-11 95.7 16.4 179 291-546 19-222 (477)
236 COG2807 CynX Cyanate permease 98.6 1.2E-06 2.6E-11 86.8 16.7 175 23-205 204-380 (395)
237 TIGR00769 AAA ADP/ATP carrier 98.6 3.8E-05 8.2E-10 81.2 28.9 130 53-182 25-189 (472)
238 TIGR00806 rfc RFC reduced fola 98.6 1.5E-06 3.3E-11 90.4 16.9 157 296-546 46-206 (511)
239 KOG2532 Permease of the major 98.6 7.7E-07 1.7E-11 94.3 14.3 146 310-543 71-217 (466)
240 COG3104 PTR2 Dipeptide/tripept 98.6 6.9E-07 1.5E-11 92.4 13.3 163 291-541 36-205 (498)
241 PF02487 CLN3: CLN3 protein; 98.5 1.7E-05 3.6E-10 81.5 22.5 134 72-211 62-197 (402)
242 KOG0254 Predicted transporter 98.5 1.8E-06 3.8E-11 93.9 15.1 140 315-546 92-233 (513)
243 KOG3810 Micronutrient transpor 98.5 3.2E-06 6.9E-11 82.9 14.5 256 76-347 49-306 (433)
244 KOG2533 Permease of the major 98.5 2E-06 4.4E-11 91.5 13.4 90 458-547 137-232 (495)
245 PF03209 PUCC: PUCC protein; 98.4 1.9E-05 4.1E-10 80.3 19.3 187 12-205 193-393 (403)
246 PRK11462 putative transporter; 98.4 1.4E-05 3.1E-10 85.5 19.7 114 72-185 266-388 (460)
247 PF06779 DUF1228: Protein of u 98.4 1.1E-06 2.4E-11 68.9 7.6 82 42-126 3-84 (85)
248 KOG3762 Predicted transporter 98.4 8.8E-07 1.9E-11 91.8 9.0 149 57-209 397-546 (618)
249 TIGR00788 fbt folate/biopterin 98.4 2.9E-06 6.3E-11 91.0 13.2 125 59-186 281-415 (468)
250 KOG0252 Inorganic phosphate tr 98.4 6.3E-07 1.4E-11 91.2 6.8 179 31-213 304-501 (538)
251 COG2211 MelB Na+/melibiose sym 98.4 8.7E-06 1.9E-10 85.0 15.4 144 40-186 245-398 (467)
252 KOG4332 Predicted sugar transp 98.3 6.1E-06 1.3E-10 78.0 11.6 101 47-151 53-154 (454)
253 PF00083 Sugar_tr: Sugar (and 98.2 4.3E-08 9.3E-13 104.7 -5.1 145 313-545 47-194 (451)
254 PF06813 Nodulin-like: Nodulin 98.2 1.8E-05 3.9E-10 76.4 13.4 140 291-517 17-157 (250)
255 PF05978 UNC-93: Ion channel r 98.2 2.6E-05 5.6E-10 69.6 13.2 109 73-182 41-149 (156)
256 KOG2816 Predicted transporter 98.2 1.9E-05 4.2E-10 83.4 13.7 137 322-551 72-208 (463)
257 COG0738 FucP Fucose permease [ 98.1 4.7E-05 1E-09 76.9 14.2 159 38-203 243-402 (422)
258 PF13000 Acatn: Acetyl-coenzym 98.1 0.00025 5.5E-09 73.6 19.7 45 473-517 423-467 (544)
259 COG3202 ATP/ADP translocase [E 98.1 0.012 2.5E-07 61.4 29.9 155 26-184 22-210 (509)
260 KOG1237 H+/oligopeptide sympor 98.0 0.00053 1.2E-08 74.5 19.7 156 48-207 55-242 (571)
261 KOG2325 Predicted transporter/ 98.0 3.7E-05 8E-10 80.6 10.1 163 301-549 59-236 (488)
262 PF03219 TLC: TLC ATP/ADP tran 97.9 0.024 5.2E-07 60.6 30.2 154 26-183 19-205 (491)
263 TIGR00926 2A1704 Peptide:H+ sy 97.8 0.00046 1E-08 76.4 16.7 163 296-540 7-180 (654)
264 TIGR00939 2a57 Equilibrative N 97.8 0.0051 1.1E-07 65.0 22.0 38 473-510 390-427 (437)
265 PF00854 PTR2: POT family; In 97.7 0.00049 1.1E-08 71.6 14.3 108 100-208 2-121 (372)
266 PF12832 MFS_1_like: MFS_1 lik 97.7 0.00013 2.9E-09 56.7 7.1 70 37-109 6-75 (77)
267 KOG1479 Nucleoside transporter 97.6 0.0076 1.7E-07 61.7 20.3 176 32-214 19-208 (406)
268 PF05631 DUF791: Protein of un 97.6 0.0062 1.3E-07 61.3 19.2 54 304-358 62-115 (354)
269 PF07672 MFS_Mycoplasma: Mycop 97.6 0.00046 1E-08 65.9 10.2 56 154-209 2-61 (267)
270 PF03137 OATP: Organic Anion T 97.5 2.3E-05 4.9E-10 85.0 -0.5 198 303-541 29-249 (539)
271 PF12832 MFS_1_like: MFS_1 lik 97.4 0.0016 3.5E-08 50.6 9.3 67 284-351 8-74 (77)
272 KOG3626 Organic anion transpor 97.2 0.0052 1.1E-07 67.6 13.7 207 303-548 123-348 (735)
273 KOG2563 Permease of the major 97.0 0.011 2.4E-07 60.9 12.5 60 302-362 70-129 (480)
274 PF03092 BT1: BT1 family; Int 96.8 0.014 3.1E-07 61.8 12.5 68 478-546 109-179 (433)
275 PF02487 CLN3: CLN3 protein; 96.7 0.022 4.7E-07 58.9 12.7 107 72-182 284-395 (402)
276 PF05978 UNC-93: Ion channel r 96.6 0.039 8.4E-07 49.3 12.1 71 288-358 8-83 (156)
277 PRK03612 spermidine synthase; 96.6 0.091 2E-06 57.0 17.1 134 60-198 44-186 (521)
278 KOG3098 Uncharacterized conser 96.5 0.14 3E-06 54.0 17.4 143 38-181 247-411 (461)
279 KOG3097 Predicted membrane pro 96.5 0.81 1.8E-05 45.5 20.9 100 78-178 67-177 (390)
280 TIGR00769 AAA ADP/ATP carrier 96.2 0.082 1.8E-06 56.2 13.9 41 475-515 149-189 (472)
281 COG0477 ProP Permeases of the 96.0 0.19 4.1E-06 49.2 14.5 61 295-355 21-82 (338)
282 PF01770 Folate_carrier: Reduc 95.8 0.11 2.3E-06 53.9 12.1 156 297-546 24-185 (412)
283 PF06963 FPN1: Ferroportin1 (F 95.5 0.46 9.9E-06 50.0 15.6 146 34-182 261-416 (432)
284 KOG1237 H+/oligopeptide sympor 95.0 0.99 2.1E-05 49.5 16.9 164 312-540 73-243 (571)
285 PF00854 PTR2: POT family; In 94.4 0.094 2E-06 54.5 6.8 75 467-541 45-122 (372)
286 PF06779 DUF1228: Protein of u 94.2 0.51 1.1E-05 37.2 9.0 71 293-364 9-79 (85)
287 PF01733 Nucleoside_tran: Nucl 93.9 0.013 2.8E-07 59.1 -0.7 38 473-510 266-303 (309)
288 PRK03612 spermidine synthase; 93.7 1.2 2.6E-05 48.3 13.9 50 489-538 143-193 (521)
289 KOG2601 Iron transporter [Inor 92.6 1.1 2.4E-05 45.4 10.3 166 33-201 29-217 (503)
290 TIGR00939 2a57 Equilibrative N 92.5 2.8 6E-05 44.5 14.2 112 69-181 307-431 (437)
291 PF03219 TLC: TLC ATP/ADP tran 89.1 3.2 6.9E-05 44.6 10.8 42 475-516 164-205 (491)
292 COG3202 ATP/ADP translocase [E 88.8 8.3 0.00018 40.8 13.1 42 475-516 168-209 (509)
293 KOG1479 Nucleoside transporter 87.4 6.9 0.00015 40.5 11.4 127 53-180 265-401 (406)
294 KOG3880 Predicted small molecu 87.1 1.2 2.6E-05 43.9 5.4 135 72-211 65-201 (409)
295 KOG0637 Sucrose transporter an 86.4 0.54 1.2E-05 48.9 2.8 133 72-204 335-490 (498)
296 KOG4332 Predicted sugar transp 85.7 11 0.00024 36.7 10.9 133 72-205 285-426 (454)
297 PF06912 DUF1275: Protein of u 82.7 42 0.00091 31.4 16.0 38 149-186 153-190 (209)
298 PF07672 MFS_Mycoplasma: Mycop 82.5 24 0.00052 34.2 11.9 100 72-172 144-253 (267)
299 KOG2601 Iron transporter [Inor 82.2 29 0.00063 35.6 12.7 47 491-537 175-221 (503)
300 PF13000 Acatn: Acetyl-coenzym 81.2 4.8 0.00011 42.7 7.3 66 284-349 8-77 (544)
301 KOG3880 Predicted small molecu 73.6 13 0.00028 37.0 7.3 142 33-181 253-401 (409)
302 COG4262 Predicted spermidine s 72.9 1.2E+02 0.0025 31.1 14.0 108 72-181 46-162 (508)
303 PF01733 Nucleoside_tran: Nucl 72.4 1.4 3E-05 44.4 0.5 108 73-180 186-306 (309)
304 KOG3810 Micronutrient transpor 71.1 42 0.0009 34.2 10.2 110 71-183 273-384 (433)
305 PF02990 EMP70: Endomembrane p 63.7 1E+02 0.0022 33.6 12.6 22 320-341 305-326 (521)
306 COG5336 Uncharacterized protei 58.4 31 0.00067 28.3 5.5 38 72-109 45-83 (116)
307 COG3619 Predicted membrane pro 58.2 1.7E+02 0.0038 27.8 17.1 115 72-186 58-196 (226)
308 KOG2881 Predicted membrane pro 54.7 2.1E+02 0.0046 27.7 13.2 26 330-355 258-283 (294)
309 KOG4830 Predicted sugar transp 54.7 0.58 1.3E-05 44.8 -5.5 353 37-559 23-406 (412)
310 COG5336 Uncharacterized protei 50.4 72 0.0016 26.2 6.4 53 485-537 36-90 (116)
311 PRK09609 hypothetical protein; 50.1 2.8E+02 0.006 27.8 15.3 33 187-219 77-111 (312)
312 KOG3574 Acetyl-CoA transporter 45.5 1.7E+02 0.0036 30.5 9.5 63 128-191 375-437 (510)
313 PRK10263 DNA translocase FtsK; 43.6 1.4E+02 0.0031 35.9 10.0 18 169-186 142-159 (1355)
314 PF11947 DUF3464: Protein of u 37.5 1.5E+02 0.0033 26.2 7.0 51 120-173 95-145 (153)
315 COG1230 CzcD Co/Zn/Cd efflux s 36.2 4.5E+02 0.0098 26.2 13.1 81 28-117 22-105 (296)
316 PF07857 DUF1632: CEO family ( 34.0 4.5E+02 0.0098 25.6 10.9 23 188-210 114-136 (254)
317 KOG1277 Endosomal membrane pro 31.1 56 0.0012 34.1 3.7 30 72-101 326-360 (593)
318 PF11947 DUF3464: Protein of u 31.0 78 0.0017 28.0 4.2 35 472-506 111-145 (153)
319 PF06027 DUF914: Eukaryotic pr 28.4 3.5E+02 0.0076 27.5 9.0 27 315-341 170-196 (334)
320 CHL00182 tatC Sec-independent 28.3 5.6E+02 0.012 24.8 15.4 39 97-135 113-151 (249)
321 PF07857 DUF1632: CEO family ( 27.5 65 0.0014 31.3 3.4 20 488-507 76-95 (254)
322 PRK10263 DNA translocase FtsK; 27.4 5.5E+02 0.012 31.3 11.3 19 322-340 62-80 (1355)
323 COG2233 UraA Xanthine/uracil p 27.1 3.9E+02 0.0085 28.4 9.2 125 33-162 18-145 (451)
324 PF03606 DcuC: C4-dicarboxylat 26.8 7.6E+02 0.016 26.4 11.7 14 333-346 105-118 (465)
325 COG0861 TerC Membrane protein 26.7 6E+02 0.013 24.7 19.2 61 134-197 28-88 (254)
326 PRK13629 threonine/serine tran 26.0 8.2E+02 0.018 26.0 16.3 29 152-180 18-46 (443)
327 COG4769 Predicted membrane pro 25.9 91 0.002 27.8 3.7 52 79-136 83-134 (181)
328 PF02632 BioY: BioY family; I 25.3 1.9E+02 0.0042 25.5 5.8 25 76-100 60-84 (148)
329 PF03547 Mem_trans: Membrane t 25.2 1.4E+02 0.003 30.9 5.7 16 325-340 8-23 (385)
330 KOG1278 Endosomal membrane pro 24.9 1E+02 0.0022 33.2 4.4 39 301-339 348-386 (628)
331 PRK11588 hypothetical protein; 24.3 9.3E+02 0.02 26.1 12.2 39 89-127 136-176 (506)
332 TIGR02230 ATPase_gene1 F0F1-AT 23.9 4E+02 0.0088 21.7 7.2 25 331-355 61-86 (100)
333 PF11151 DUF2929: Protein of u 22.6 3E+02 0.0065 19.8 5.7 47 165-212 9-55 (57)
334 COG1268 BioY Uncharacterized c 22.0 2.3E+02 0.0051 26.0 5.7 23 76-98 89-111 (184)
335 COG1230 CzcD Co/Zn/Cd efflux s 21.8 8E+02 0.017 24.5 12.1 33 495-527 159-191 (296)
336 PF02694 UPF0060: Uncharacteri 21.7 1.9E+02 0.0042 23.8 4.5 48 72-119 57-104 (107)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-42 Score=354.67 Aligned_cols=449 Identities=34% Similarity=0.603 Sum_probs=376.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--------cc--cccch-hhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD--------FK--SVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRF 96 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~--------~~--~s~~~-~~~~g~l~s~~~lg~~i~~l~~G~lsDr~ 96 (579)
+.........++.+-.++....+++..+.+.+- +| .++++ ....+.+.+++.+|.++|+++.|+++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666677888888777766555433 34 22222 23458899999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHh---cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH
Q 008060 97 GRRTSILVADFLFFVGAVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL 173 (579)
Q Consensus 97 Grr~vl~~~~~l~~i~~ll~~~---a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i 173 (579)
|||..+.++.++..++.++..+ .+++.+++++|++.|+..|........++.|..|++.||....+...+..+|..+
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll 167 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL 167 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence 9999999988888777776655 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHh-cCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhh
Q 008060 174 SYLINLA-FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYR-KGREEEAQAILRKVYPAHEVETEIRDLKESVDK 251 (579)
Q Consensus 174 g~~l~~~-l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (579)
+..++.- +......|++.+.+..+++++..+.+.++||||||+.. |++++++++.++..++.++.+++.++..+..++
T Consensus 168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~ 247 (485)
T KOG0569|consen 168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE 247 (485)
T ss_pred HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 9777743 33333359999999999999999999999999999988 899999999999999887766555544433322
Q ss_pred hHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 008060 252 EIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (579)
++ ..+.+..+++++++++..++...+.+.+...+++.+.+...+|...++++.|. +...+.+.....++...+.+++
T Consensus 248 ~~--~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 248 EE--LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred hc--cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12235678999999999999999999999999999999999999999999987 5667788888889999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCC
Q 008060 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDC 411 (579)
Q Consensus 332 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (579)
+.+++||.|||++++.++.++.+..+++........... .|.
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------------------------~~~------------ 366 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--------------------------SWL------------ 366 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hHH------------
Confidence 999999999999999999999888887776644221100 111
Q ss_pred CcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchh
Q 008060 412 GFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV 491 (579)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 491 (579)
.|..+...+++...+..|.+|+.|.+.+|++|++.|+.
T Consensus 367 ------------------------------------------~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~a 404 (485)
T KOG0569|consen 367 ------------------------------------------SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSA 404 (485)
T ss_pred ------------------------------------------HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHH
Confidence 44557888899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHHHHHhh
Q 008060 492 CGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 560 (579)
Q Consensus 492 ~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (579)
++++....+++++++....+..+.+..|. ..|+.+.+.+++..++.++.+||||+|+.+|+.++.+++
T Consensus 405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999998 789999999999999999999999999999998887766
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=2e-40 Score=364.77 Aligned_cols=436 Identities=19% Similarity=0.214 Sum_probs=333.1
Q ss_pred HHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060 17 RECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF 96 (579)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~ 96 (579)
++.+++....+++|.++++++++.+..+++...++.++|.+.++++++..+. +++.+++.++.+++++++|+++||+
T Consensus 153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~---g~l~s~~~lG~iiG~li~G~LsDR~ 229 (742)
T TIGR01299 153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK---GMLGLIVYLGMMVGAFFWGGLADKL 229 (742)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445566788999999999999999999999999999999999988777 9999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060 97 GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL 176 (579)
Q Consensus 97 Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~ 176 (579)
|||+++++++++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++..+++.+|.++++.
T Consensus 230 GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~ 309 (742)
T TIGR01299 230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA 309 (742)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhccCc------------CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchh----h
Q 008060 177 INLAFTRAP------------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE----T 240 (579)
Q Consensus 177 l~~~l~~~~------------~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~----~ 240 (579)
++..+.... .+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+... .
T Consensus 310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~ 389 (742)
T TIGR01299 310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE 389 (742)
T ss_pred HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh
Confidence 886665321 249999999888888877778889999999999999999999998887654321 1
Q ss_pred hH---HHhhhhhhhhH--H-hhcc----------------chhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 241 EI---RDLKESVDKEI--E-EEGS----------------SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYY 298 (579)
Q Consensus 241 ~~---~~~~~~~~~~~--~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (579)
.. ...+.....+. + +... ....+++++++.+ +++..+..... ++...++++.+..|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~-wf~~~~~yygl~~w 467 (742)
T TIGR01299 390 KVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGV-WFTLSFGYYGLSVW 467 (742)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 00 00000000000 0 0000 0011355556554 44444444434 45566678999999
Q ss_pred HHHHHHHh---C---------------------------------------C-----C----------------------
Q 008060 299 SPTIVQLS---G---------------------------------------F-----A---------------------- 309 (579)
Q Consensus 299 ~~~~~~~~---~---------------------------------------~-----~---------------------- 309 (579)
+|.+++.. . . .
T Consensus 468 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (742)
T TIGR01299 468 FPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFK 547 (742)
T ss_pred HHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhh
Confidence 99876431 0 0 0
Q ss_pred ---------------------------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060 310 ---------------------------------------------SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL 344 (579)
Q Consensus 310 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 344 (579)
+.........+..++.+++.+++|+++||+|||++
T Consensus 548 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~ 627 (742)
T TIGR01299 548 NCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM 627 (742)
T ss_pred ccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 00112344556678889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060 345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (579)
+.++.++.+++.+++.+...
T Consensus 628 l~~~~~lsai~~ll~~~~~s------------------------------------------------------------ 647 (742)
T TIGR01299 628 LAGSMVLSCISCFFLSFGNS------------------------------------------------------------ 647 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcc------------------------------------------------------------
Confidence 99888888888776654321
Q ss_pred cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHH
Q 008060 425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISN 504 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~ 504 (579)
.+..++..+ +..++..+..+..+++++|++|++.|++++|+.++.+.+|+
T Consensus 648 -----------------------------~~~ll~~~~-l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGa 697 (742)
T TIGR01299 648 -----------------------------ESAMIALLC-LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAA 697 (742)
T ss_pred -----------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 111122222 22333334456677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060 505 LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLP 549 (579)
Q Consensus 505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (579)
+++|.+.+.+.+. +...+|++++++.++++++.+ ++|||+++.
T Consensus 698 iigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 698 VLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 9999999988775 456788888888888777654 569998865
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=1.1e-39 Score=352.60 Aligned_cols=441 Identities=21% Similarity=0.302 Sum_probs=318.1
Q ss_pred hhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhc-ccc-cchhhHHHHHHHHHHHHHHHHHHhHhhhhccccc
Q 008060 21 SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF-KSV-DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR 98 (579)
Q Consensus 21 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~-~~s-~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Gr 98 (579)
++....+++++.+..++++.+.++++...++.+.|.+..++ +.+ ..+....+++.+.+.++..++++++|+++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr 85 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR 85 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445667888888899999999999999999999887753 211 1112233899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcch------hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHH
Q 008060 99 RTSILVADFLFFVGAVIMAAAPN------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF 172 (579)
Q Consensus 99 r~vl~~~~~l~~i~~ll~~~a~~------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ 172 (579)
|+++.++.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++......+|..
T Consensus 86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~ 165 (502)
T TIGR00887 86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888765 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC----------------------cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHH-HHHHHH
Q 008060 173 LSYLINLAFTRA----------------------PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREE-EAQAIL 229 (579)
Q Consensus 173 ig~~l~~~l~~~----------------------~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~-~~~~~~ 229 (579)
+++.++..+... ..+||+.|.+.++++++..+..+++||+|+|+..+++.+ ++.+.+
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~ 245 (502)
T TIGR00887 166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDM 245 (502)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHH
Confidence 999888765320 114999999888888877777888999999998877764 355555
Q ss_pred HhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 230 RKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR---TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS 306 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (579)
++....+..++ .++..+. +++ ++..+.+++++++++ +.++..+.. ....+.+...++....|.|.++++.
T Consensus 246 ~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~p~i~~~~ 318 (502)
T TIGR00887 246 SAVLQVKIEAE-PDEVEKA----STA-VEVPKASWSDFFTHFFKWRHGKHLLGT-AGSWFLLDIAFYGVNLNQKVILSAI 318 (502)
T ss_pred HHHhccccccC-cccccch----hcc-ccchhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHccccccHHHHHHH
Confidence 55433211111 0110000 000 011123466676643 222222222 2222333344556667789998877
Q ss_pred CCCchhH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 008060 307 GFASNRT-----------ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA 375 (579)
Q Consensus 307 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (579)
+...... .........++.+++.++.++++||+|||++++.+..+..++..++........
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~-------- 390 (502)
T TIGR00887 319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS-------- 390 (502)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 7643211 111233444566778899999999999999988888777777666654432100
Q ss_pred ccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcch
Q 008060 376 VETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGW 455 (579)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (579)
..
T Consensus 391 ------------------------------------------------------------------------------~~ 392 (502)
T TIGR00887 391 ------------------------------------------------------------------------------TH 392 (502)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred HHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh----------cccchhhH
Q 008060 456 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA----------IGTSWTFL 525 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~----------~g~~~~~~ 525 (579)
..+....++..++..+..+..+.+.+|++|++.|+++.|+.++.++++++++|.+++.+.+. .++...|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (502)
T TIGR00887 393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472 (502)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence 11222223333445566677788899999999999999999999999999999999999884 34456788
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCChHHHHH
Q 008060 526 IFGVISVAALLFVLIFVPETKGLPIEEIEK 555 (579)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (579)
+++++++++.++. +++|||++++.||+++
T Consensus 473 i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 473 IFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 8888888877654 5779999999877654
No 4
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=1.1e-38 Score=343.30 Aligned_cols=436 Identities=37% Similarity=0.652 Sum_probs=327.6
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhc--------ccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF--------KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF 96 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~--------~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~ 96 (579)
..++..+......++.+..+++...+++..|.+.+++ +.+..+. +++.+++.++..++++++|+++||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~ig~~~~~~~~G~l~dr~ 82 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL---GFCVASALIGCIIGGALGGYCSNRF 82 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677778888899999999999999999999888 5555555 9999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhc------------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhH
Q 008060 97 GRRTSILVADFLFFVGAVIMAAA------------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG 164 (579)
Q Consensus 97 Grr~vl~~~~~l~~i~~ll~~~a------------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~ 164 (579)
|||++++++.++++++.++++++ ++++.+++.|+++|++.|...+...++++|++|+++|++++++.+
T Consensus 83 Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~ 162 (479)
T PRK10077 83 GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQ 162 (479)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHH
Confidence 99999999999999998887763 235678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc--------cCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCC
Q 008060 165 FLITSGQFLSYLINLAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAH 236 (579)
Q Consensus 165 ~~~~iG~~ig~~l~~~l~--------~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~ 236 (579)
.+..+|.++++.+++.+. +.. +||+.|++.+++.++..+..+++||+|+++..+++.++.++..++.....
T Consensus 163 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~ 241 (479)
T PRK10077 163 FAIIFGQLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT 241 (479)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh
Confidence 999999999988876553 233 49999999888777776667788999999888887777766665554332
Q ss_pred chhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 008060 237 EVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALL 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (579)
......++...... .+ .......+. ..............+.+..+++...++.|.+.++.+.. .....+
T Consensus 242 ~~~~~~~~~~~~~~----~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~-~~~~~~ 310 (479)
T PRK10077 242 LATQALQEIKHSLD----HG----RKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS-TDIALL 310 (479)
T ss_pred hHHHHHHHHHHHHH----Hh----hhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCC-CchHHH
Confidence 22111111110000 00 000011111 01111222233334455556667778889888877664 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccc
Q 008060 317 LSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATAD 396 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (579)
.....++..+++.+++++++||+|||++++.+..+++++.+++........
T Consensus 311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~----------------------------- 361 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA----------------------------- 361 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc-----------------------------
Confidence 666777888999999999999999999999999888888777654432110
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccccc
Q 008060 397 RWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAP 476 (579)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (579)
..+.....++++..++..+..+..
T Consensus 362 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 385 (479)
T PRK10077 362 --------------------------------------------------------PGIVALLSMLFYVAAFAMSWGPVC 385 (479)
T ss_pred --------------------------------------------------------ccHHHHHHHHHHHHHHhccccchh
Confidence 012233444555555555556777
Q ss_pred ceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH------HhcccchhhHHHHHHHHHHHHHhhhhccCCCCCCh
Q 008060 477 WIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT------QAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPI 550 (579)
Q Consensus 477 ~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (579)
+.+++|.+|++.|++++|+.+..+++++++++.+++.+. +..++...|++++++++++.++.+++.||+|+++.
T Consensus 386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 465 (479)
T PRK10077 386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 465 (479)
T ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence 899999999999999999999999999999987776554 56778888999998888888887778999999998
Q ss_pred HHHHHHHHhh
Q 008060 551 EEIEKMLELR 560 (579)
Q Consensus 551 ~~~~~~~~~~ 560 (579)
||.++..+++
T Consensus 466 ~~~~~~~~~~ 475 (479)
T PRK10077 466 EEMEALWEPE 475 (479)
T ss_pred HHHHHHHhhc
Confidence 8877766544
No 5
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=339.51 Aligned_cols=451 Identities=42% Similarity=0.695 Sum_probs=363.4
Q ss_pred hhHHHHHHHHHHHHHhhhh--hhhhhhhhhhhhhhcccccchh----hHHHHHHHHHHHHHHHHHHhHhhhhccccchHH
Q 008060 28 YVLRLAFSAGIGGLLFGYD--TGVISGALLYIRDDFKSVDRKT----LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTS 101 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~--~~~~~~~lp~i~~~~~~s~~~~----~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~v 101 (579)
..........+..+..+++ ....++....+.++........ ...+++.+++.++..+++++.|+++|++|||+.
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4445555556666666665 5566777777776543322222 233899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 102 ILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 102 l~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
++++.+++.++.+++++++|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..++...
T Consensus 122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996666555
Q ss_pred ccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCC--CchhhhHHHhhhhhhhhHHhhccc
Q 008060 182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPA--HEVETEIRDLKESVDKEIEEEGSS 259 (579)
Q Consensus 182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
.+...+||..+.+..+++++..+..+++||+|+|+.++++.+++++.+++..+. .+...+.++.... ...+.....
T Consensus 202 ~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~--~~~~~~~~~ 279 (513)
T KOG0254|consen 202 SKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIK--LLVEAEVAE 279 (513)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHH--HHHhhhccc
Confidence 433114999999999999888888888999999999999999999999998883 3333333333311 111111111
Q ss_pred hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT 339 (579)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 339 (579)
.+....++++ |..++..++++.+..++++.+++...+|.+.+++..+..+.. .......++..+++.+++.++.||+
T Consensus 280 ~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~ 356 (513)
T KOG0254|consen 280 GKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRF 356 (513)
T ss_pred ccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1113444554 778888888999999999999999999999999999886554 5555666777888999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCC
Q 008060 340 GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419 (579)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (579)
|||++++.+...+.++.+++.........+..
T Consensus 357 gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~------------------------------------------------ 388 (513)
T KOG0254|consen 357 GRRKLLLFGAAGMSICLVILAVVGVFALYYPN------------------------------------------------ 388 (513)
T ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC------------------------------------------------
Confidence 99999999999999999988877654322100
Q ss_pred CCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHH
Q 008060 420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA 499 (579)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~ 499 (579)
+.....++.++..+++...+..+++++.|.+.+|++|.+.|+.+.++....
T Consensus 389 -----------------------------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~ 439 (513)
T KOG0254|consen 389 -----------------------------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAV 439 (513)
T ss_pred -----------------------------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHH
Confidence 123357888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH-HhhhhccCCCCCChHHHHHHHHhh
Q 008060 500 NWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALL-FVLIFVPETKGLPIEEIEKMLELR 560 (579)
Q Consensus 500 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 560 (579)
+++.+.+....+....+..+....|..++.++.+..+ +.++++||||++++||+++.++++
T Consensus 440 n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 440 NWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 9999998888887777766545677777777777777 778899999999999999877665
No 6
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=1.2e-37 Score=333.99 Aligned_cols=442 Identities=41% Similarity=0.683 Sum_probs=324.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccc--------cchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSV--------DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG 97 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s--------~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G 97 (579)
.++.+.....+.++.+...++...+++..+.+..+++.+ ..+. +++.+++.++..++++++|+++||+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g 99 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW---GLVVSIFLVGGFIGALFAGWLSDRFG 99 (481)
T ss_pred cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH---HHHHHHHHHHHHHHHHHhhHhhhhhh
Confidence 344455555666677788889999999999999988876 4455 99999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhc---chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHH
Q 008060 98 RRTSILVADFLFFVGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS 174 (579)
Q Consensus 98 rr~vl~~~~~l~~i~~ll~~~a---~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig 174 (579)
||++++++.++++++.+++.+. .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..++
T Consensus 100 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 179 (481)
T TIGR00879 100 RKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA 179 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999988554 4456899999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhh
Q 008060 175 YLIN---LAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDK 251 (579)
Q Consensus 175 ~~l~---~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (579)
+.++ ....+..+ ||+.|++.++..++..+..+++||+|+++..+++.++..+..++.......+....+.....+.
T Consensus 180 ~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
T TIGR00879 180 YGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258 (481)
T ss_pred HHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 9999 66555555 9999999777776666667788999988776666665555444433222111111110000000
Q ss_pred hHHhhccchhhhHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 008060 252 EIEEEGSSEKINLVKLLKTRT-VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI 330 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (579)
....+.+..+..+.+.++..+ .....+....+..+..........++.|.++++.+... ..++.......++.+++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 337 (481)
T TIGR00879 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTF 337 (481)
T ss_pred HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHH
Confidence 000111111111233333211 22333333334444444555566778888888877654 6677888888888999999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCC
Q 008060 331 VSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPD 410 (579)
Q Consensus 331 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (579)
+.++++||++||+.+..++.+.+++.+++.........+..
T Consensus 338 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 378 (481)
T TIGR00879 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS--------------------------------------- 378 (481)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc---------------------------------------
Confidence 99999999999999988887777777666543221100000
Q ss_pred CCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccch
Q 008060 411 CGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRG 490 (579)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 490 (579)
....+..+....++..+++.+..+....+..|.+|++.|+
T Consensus 379 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (481)
T TIGR00879 379 ----------------------------------------KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418 (481)
T ss_pred ----------------------------------------cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence 0012333455556666666666677778889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChH
Q 008060 491 VCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIE 551 (579)
Q Consensus 491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (579)
+++|+.++..++|++++|.+.+.+.++.|+.+.|++.+++++++.++.+++.||+|+++.+
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9999999999999999999999999999999999999999999888877778988877653
No 7
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=308.44 Aligned_cols=401 Identities=17% Similarity=0.126 Sum_probs=314.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
+++|+.+++.+++++...++.+..++...|.+.++.+++..+. |++.+.+.+.|.++..+.|.++||.++|+.+.++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l---G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL---GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 4578899999999999999999999999999999999999888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH--HHhcc
Q 008060 106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN--LAFTR 183 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~--~~l~~ 183 (579)
+++.++.+++++++++++.+.++-++.|+++|..+|++...++.|+|+++||+..++++++.++|..+.|++. +++..
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc---
Q 008060 184 APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS--- 259 (579)
Q Consensus 184 ~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 259 (579)
+.+ ||..|++.++++++..++ ++..+++|+..-...-++ ..++..+..+++++.
T Consensus 181 ~~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~---------------------~~~d~~e~~~~~~~~~~l 238 (448)
T COG2271 181 HGG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE---------------------YRGDPLEIYEEEKENEGL 238 (448)
T ss_pred ccc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH---------------------hhcCchhhhhhhccCCCc
Confidence 776 999999999988877766 666788875221111000 000000000111111
Q ss_pred --hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 260 --EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID 337 (579)
Q Consensus 260 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 337 (579)
.+.-.+..+++|.+|.. .+..++....-+.+..|.|.|+.+..+.+...+.......-.++++|++++|+++|
T Consensus 239 s~~~i~~~YVL~Nk~iW~l-----a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD 313 (448)
T COG2271 239 TAWQIFVKYVLKNKLIWLL-----ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD 313 (448)
T ss_pred cHHHHHHHHHHcChHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12233445566665543 34444455568899999999999998889999999999999999999999999999
Q ss_pred hc--CCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCccc
Q 008060 338 RT--GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCA 415 (579)
Q Consensus 338 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (579)
|+ |||....+.+.+.....++......
T Consensus 314 klfkgrR~p~~~i~~~~i~~~~~~~w~~~--------------------------------------------------- 342 (448)
T COG2271 314 KLFKGRRGPMALIFMLLITASLVLYWLAP--------------------------------------------------- 342 (448)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence 96 5666554433333222222222111
Q ss_pred CCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH
Q 008060 416 SHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI 495 (579)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi 495 (579)
++ ++......++.++++..|..-+.-....|..|.+..|++.|+
T Consensus 343 -----------------------------------~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf 386 (448)
T COG2271 343 -----------------------------------NG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGF 386 (448)
T ss_pred -----------------------------------Cc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhch
Confidence 11 223344444444444444443445678899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 496 AATANWI-SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 496 ~~~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
...++++ |++.+....|.+.|..||...|.++.+.++++.++......
T Consensus 387 ~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 387 VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 88899999999999999999999998888888877655443
No 8
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=4.1e-36 Score=322.02 Aligned_cols=413 Identities=14% Similarity=0.037 Sum_probs=294.6
Q ss_pred hhhHHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhh
Q 008060 14 SAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93 (579)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~ls 93 (579)
.+++|++.+....+..+.++..+++.++..++++..+++..|.+.+|+|.+..+. |++.+.+.+++.+++++.|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~ 88 (467)
T PRK09556 12 LDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL---GMIGLGFSITYGVGKTLVGYYA 88 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhhHh
Confidence 3455544444445567788888999999999999999999999999999998888 9999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHH
Q 008060 94 DRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLIT 168 (579)
Q Consensus 94 Dr~Grr~vl~~~~~l~~i~~ll~~~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~ 168 (579)
||+|||+++.+++++++++.++.++ +++++.+++.|+++|++.+...|...++++||+|+++|+++++++..+.+
T Consensus 89 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~ 168 (467)
T PRK09556 89 DGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN 168 (467)
T ss_pred hccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc
Confidence 9999999999888888777766654 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCc--CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHh
Q 008060 169 SGQFLSYLINLAFTRAP--GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDL 245 (579)
Q Consensus 169 iG~~ig~~l~~~l~~~~--~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (579)
+|.+++++++.++.... ++||..|.+.+++.++..++ +++.+++|+....+. .++ . ..... ..
T Consensus 169 lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~---~~~~~--~~----- 234 (467)
T PRK09556 169 LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEE---I---FGEPI--SE----- 234 (467)
T ss_pred hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhh---c---ccCcc--ch-----
Confidence 99999999987766532 24999999888877766555 455566664211110 000 0 00000 00
Q ss_pred hhhhhhhHHhhccch-hhh-HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 008060 246 KESVDKEIEEEGSSE-KIN-LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG 323 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (579)
+++..+.++.. ... .++.+++|.+|...+. .++..........|.|.|+++..+.+..++++......+
T Consensus 235 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~ 305 (467)
T PRK09556 235 ----EDKETESTDMTKWQIFVEYVLKNPVIWLLCFA-----NIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEI 305 (467)
T ss_pred ----hhhccccccCcHHHHHHHHHHcChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 00000000000 111 1236777776643332 223333455677899999977655577777888888888
Q ss_pred HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccccc
Q 008060 324 LNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKC 403 (579)
Q Consensus 324 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (579)
+.+++.++.|+++||++||+.+.....+..++..++..... .
T Consensus 306 ~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-~------------------------------------- 347 (467)
T PRK09556 306 GALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-T------------------------------------- 347 (467)
T ss_pred HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-C-------------------------------------
Confidence 89999999999999999998766554444333222222111 0
Q ss_pred ccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccc
Q 008060 404 LKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEI 483 (579)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (579)
..+...+..++++ .+..+..........|.
T Consensus 348 -------------------------------------------------~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~ 377 (467)
T PRK09556 348 -------------------------------------------------SEYMYLASLFALG-FLVFGPQLLIGVAAVGF 377 (467)
T ss_pred -------------------------------------------------cHHHHHHHHHHHH-HHHhhHHHHHHHHHHhh
Confidence 0111112222222 12222222223456699
Q ss_pred cccccchhhhHHHHHHHHH-HHHHHHHHHHHHHH------------hcccchhhHHHHHHHHHHHHHhhh
Q 008060 484 YPLRFRGVCGGIAATANWI-SNLIVAQSFLSLTQ------------AIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 484 ~p~~~~g~~~gi~~~~~~~-g~~i~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+|++.+|++.|+.++.+++ |++++|.+.|.+.| ..||+..|.+.+++++++.+..++
T Consensus 378 ~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 378 VPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred cchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 77999999999999 578999999998888888776554
No 9
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=4.1e-35 Score=315.98 Aligned_cols=402 Identities=16% Similarity=0.180 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchh-hHHHH--HHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060 30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT-LLQES--IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (579)
Q Consensus 30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~-~~~g~--l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~ 106 (579)
++.+....++.+++++|...++...|.+.++++.+.++. .+.+. +.++.++++.++++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346667788999999999999999999999987544332 11122 358888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhH--------HHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH
Q 008060 107 FLFFVGAVIMAAAPNPGA--------LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN 178 (579)
Q Consensus 107 ~l~~i~~ll~~~a~~~~~--------ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~ 178 (579)
++++++++++++++|+++ ++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 899999999999999999999999999999999999999988888888888666
Q ss_pred HHhcc--------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhh
Q 008060 179 LAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVD 250 (579)
Q Consensus 179 ~~l~~--------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (579)
..+.. ..+ ||+.|++.++++++..++...+||+|++...+++.++..+
T Consensus 175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~----------------------- 230 (490)
T PRK10642 175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR----------------------- 230 (490)
T ss_pred HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------
Confidence 54432 344 9999999877666555556678999886533221111000
Q ss_pred hhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 008060 251 KEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI 330 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (579)
+...+.++.++.+++++. ++....... ..+.....++....|.|.++++..+.+.....+......++.+++.+
T Consensus 231 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~ 304 (490)
T PRK10642 231 ---EGLQDGPKVSFKEIATKH--WRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQP 304 (490)
T ss_pred ---ccccccccCCHHHHHHHh--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000001122345555531 222222221 22233455677778999999765444555566666777788899999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCC
Q 008060 331 VSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPD 410 (579)
Q Consensus 331 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (579)
+.|+++||+|||+.+..+..+..++...+.......
T Consensus 305 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 340 (490)
T PRK10642 305 VMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN-------------------------------------------- 340 (490)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------------------------
Confidence 999999999999988777654433322222111100
Q ss_pred CCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccch
Q 008060 411 CGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRG 490 (579)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 490 (579)
......+..++...+.+.+ ......+..|++|++.||
T Consensus 341 ------------------------------------------~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg 377 (490)
T PRK10642 341 ------------------------------------------VIGLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRY 377 (490)
T ss_pred ------------------------------------------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccch
Confidence 0111122222222222222 223346677899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060 491 VCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVPETKGLP 549 (579)
Q Consensus 491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (579)
++.|+.+..+.+++.++|.+.+.+.+..+ ++.++++..+.++++++.. +++||++++.
T Consensus 378 ~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~ 436 (490)
T PRK10642 378 SALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCC
Confidence 99998766677888899999999988655 5656666666666666654 4568886543
No 10
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=1.4e-35 Score=314.74 Aligned_cols=406 Identities=14% Similarity=0.091 Sum_probs=290.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~ 106 (579)
+.++.+.....+..+..+++...++..+|.+.+++|.+..+. |++.+.+.+++.+++++.|+++||+|||+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~ 95 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI---GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence 456667777778888888888899999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
++.+++.++.+++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++++.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 175 (434)
T PRK11663 96 IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG 175 (434)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh-H
Q 008060 187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN-L 264 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 264 (579)
||+.|++.+++.++..+. .++++|+|++...+...+..++ . .+. .++ .+.++.+..+ .
T Consensus 176 -w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------------~---~~~-~~~-~~~~~~~~~~~~ 235 (434)
T PRK11663 176 -WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD--------------A---LEL-AQQ-QEGAGLSRKEIL 235 (434)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc--------------c---ccc-chh-ccccCCChhhhH
Confidence 999999988776655444 5567887653211100000000 0 000 000 0000000111 1
Q ss_pred -HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 008060 265 -VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT--GR 341 (579)
Q Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~ 341 (579)
...++++.++...+. .+........+..|.|.|+++..+.+...++.......++.++++++.|+++||+ ++
T Consensus 236 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 310 (434)
T PRK11663 236 TKYVLLNPYIWLLSFS-----YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGN 310 (434)
T ss_pred HHHHhcChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCC
Confidence 124555655443222 2223334556677889999665555677778888888899999999999999998 33
Q ss_pred chhh-HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCC
Q 008060 342 KKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420 (579)
Q Consensus 342 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (579)
|+.. ........+....+..... .
T Consensus 311 r~~~~~~~~~~~~~~~~~~~~~~~-~------------------------------------------------------ 335 (434)
T PRK11663 311 RGPMNLIFAAGILLSVGSLWLMPF-A------------------------------------------------------ 335 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHccc-c------------------------------------------------------
Confidence 3332 2222222222221111100 0
Q ss_pred CCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHH
Q 008060 421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN 500 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~ 500 (579)
.........+..+++..+..........|.+|++.||+++|+.++.+
T Consensus 336 ---------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 382 (434)
T PRK11663 336 ---------------------------------SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFA 382 (434)
T ss_pred ---------------------------------cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHH
Confidence 01111122222222222222223356689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060 501 WISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 501 ~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
++|++++|.++|.+.|..|+...|.+.+++++++.+..+...++.+++
T Consensus 383 ~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 383 YLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999999999999999999999999999888877666555544433
No 11
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=8.8e-36 Score=323.00 Aligned_cols=394 Identities=23% Similarity=0.351 Sum_probs=295.1
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF 131 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l 131 (579)
+..|.+.+|+++++++....+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 56788999999996555556999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccC
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE 211 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpe 211 (579)
.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++||
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999987765 4999999999888887777788999
Q ss_pred ChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHH
Q 008060 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVG 291 (579)
Q Consensus 212 sp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (579)
+|+|+..+++.+++.+..++..+.+......+......++ +..++.++.+.++++++|.++...+......+. .
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--- 339 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK--DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT-T--- 339 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh--hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH-H---
Confidence 9999999999888887777655443322111111110001 011111234678899998887766654433221 1
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060 292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP 371 (579)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
....+..+.+....+. + ........++..+++.++.+++.||+|||+.+..+.++.+++.+++......
T Consensus 340 -~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~------ 408 (505)
T TIGR00898 340 -AFSYYGLVLDLGNLGG-N---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD------ 408 (505)
T ss_pred -HHHHHHHhccccccCC-C---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC------
Confidence 1111122233333333 2 2233445567788999999999999999999988888777776665543210
Q ss_pred ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060 372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS 451 (579)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (579)
T Consensus 409 -------------------------------------------------------------------------------- 408 (505)
T TIGR00898 409 -------------------------------------------------------------------------------- 408 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060 452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS 531 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (579)
..+...... +...++..+..+..+.+.+|++|++.|++++|+.++.+.+|++++|.+.+ + +..+...++.+++++.
T Consensus 409 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 409 -LYFLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLA 484 (505)
T ss_pred -chHHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHH
Confidence 012222222 22222222234556688899999999999999999999999999999998 4 4456677888888888
Q ss_pred HHHHHHhhhhccCCCCCChH
Q 008060 532 VAALLFVLIFVPETKGLPIE 551 (579)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~ 551 (579)
+++.++. +++|||++++.+
T Consensus 485 ~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 485 LLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHHHHH-HcCcCCCCCCCC
Confidence 8887765 468999988764
No 12
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-35 Score=292.66 Aligned_cols=378 Identities=21% Similarity=0.203 Sum_probs=312.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~ 106 (579)
+..+..++.+.++.|..+........++|++.+|++.+..+. |++.|+|.++.+++.++...++||+.||++++..+
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a---G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l 85 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA---GQLITAYALGVALGAPLLALLTGRLERRRLLLGLL 85 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence 445667788889999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
.++.++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+..|
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060 187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (579)
||+.|++.+.++++..+. +..+| |+. ..++++.+..+..
T Consensus 166 -WR~~F~~ia~l~ll~~~~~~~~lP--~~~-------------------------------------~~~~~~~~~~~~~ 205 (394)
T COG2814 166 -WRATFLAIAVLALLALLLLWKLLP--PSE-------------------------------------ISGSLPGPLRTLL 205 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCC--Ccc-------------------------------------CCCCCCcchhHHH
Confidence 999999999998888777 67778 210 0011222334577
Q ss_pred HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 008060 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL 345 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 345 (579)
+.+|+|.++...+..++. +.+.+...+|...++++..+.+.....+....++++.++|..++|++.|| +.|+.+
T Consensus 206 ~~l~~p~v~~~l~~t~l~-----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l 279 (394)
T COG2814 206 RLLRRPGVLLGLLATFLF-----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL 279 (394)
T ss_pred HHhcCchHHHHHHHHHHH-----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH
Confidence 889999998766655443 44667777777778887777788888999999999999999999999999 888888
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcc
Q 008060 346 VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGA 425 (579)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (579)
.....++++..+.+.+....
T Consensus 280 ~~~~~l~a~~~l~l~~~~~~------------------------------------------------------------ 299 (394)
T COG2814 280 IAALLLLALALLALTFTGAS------------------------------------------------------------ 299 (394)
T ss_pred HHHHHHHHHHHHHHHHhcch------------------------------------------------------------
Confidence 88878887777776665331
Q ss_pred ccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHH
Q 008060 426 CLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNL 505 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~ 505 (579)
.+..+....+........ ........++ .-++.++.+.++.....++|..
T Consensus 300 ----------------------------~~~~~~~~~~wg~a~~~~-~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia 349 (394)
T COG2814 300 ----------------------------PALALALLFLWGFAFSPA-LQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA 349 (394)
T ss_pred ----------------------------HHHHHHHHHHHHHHhhhh-hhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH
Confidence 222233333322222211 1122344444 2357789999999999999999
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 506 IVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 506 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
+|..+.|.++|+.|+....++.+++.++++++.+...+
T Consensus 350 ~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 350 LGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888655433
No 13
>PRK12307 putative sialic acid transporter; Provisional
Probab=100.00 E-value=2.8e-34 Score=304.40 Aligned_cols=377 Identities=22% Similarity=0.230 Sum_probs=280.3
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
..+++++.+..+.++.+.++++.....+..|.+.+++|.++.+. +++.+++.++..+++++.|+++||+|||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~ 88 (426)
T PRK12307 12 ITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG---AFLATAAFIGRPFGGALFGLLADKFGRKPLMMW 88 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 34566777788889999999999999999999999999998888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+.++|.++++.+.+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 89 SIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060 185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL 264 (579)
Q Consensus 185 ~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.+ ||+.|++..+..++........||++++...+.+ ... ++.+...+......
T Consensus 169 ~~-w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~--------------~~~~~~~~~~~~~~ 221 (426)
T PRK12307 169 YG-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKG--------------KHSQSAWSVFSLSM 221 (426)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccc--------------cccccchhhhhHHH
Confidence 76 9999988654433333223334555432211000 000 00000000112345
Q ss_pred HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060 265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL 344 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 344 (579)
+++++++.++...+.... .+..+...+.+..+.|.++++.+. +....+.......++.+++.++.|++.||++||+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~ 298 (426)
T PRK12307 222 KGLFNRAQFPLTLCVFIV--LFSIFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT 298 (426)
T ss_pred HHHHhhchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 677787776544332221 122223333456678889888765 55566677777888899999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060 345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (579)
+..+..+..+..+++..... .
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~-~---------------------------------------------------------- 319 (426)
T PRK12307 299 FSIGLLMSFLFIFPLFRIPQ-D---------------------------------------------------------- 319 (426)
T ss_pred HHHHHHHHHHHHHHHHHHcc-c----------------------------------------------------------
Confidence 88777666554443332211 0
Q ss_pred cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHH-hhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060 425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYII-FFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS 503 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g 503 (579)
.+. .+..+++.. ....+..+....++.|.+|++.||+++|+.+...+++
T Consensus 320 -----------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~ 369 (426)
T PRK12307 320 -----------------------------NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATS 369 (426)
T ss_pred -----------------------------cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHH
Confidence 111 122222222 2222333444567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccchh
Q 008060 504 NLIVAQSFLSLTQAIGTSWT 523 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~ 523 (579)
+.++|.+.|.+.+..|+...
T Consensus 370 ~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 370 GTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHHHHHcccHHHH
Confidence 99999999999999886543
No 14
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=1.2e-34 Score=305.43 Aligned_cols=398 Identities=16% Similarity=0.125 Sum_probs=283.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~ 106 (579)
+.+|+.+..+++.++++++++..++...|.+.+|+|.+..+. |++.+++.+++++++++.|+++||+|||+++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~ 80 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF---GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM 80 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence 356888889999999999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc---
Q 008060 107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR--- 183 (579)
Q Consensus 107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~--- 183 (579)
++++++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+.++|.++++.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred ---CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060 184 ---APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259 (579)
Q Consensus 184 ---~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
.. +||+.|++.++++++..++ ++++||+|+... .-..++.+...+..+..... ..+. +.........
T Consensus 161 ~~~~~-gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~ 231 (412)
T TIGR02332 161 LMALK-GWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLT------LEQP-EGAFAHAAMP 231 (412)
T ss_pred CCCcc-chhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhcccc------cccc-cccccccccc
Confidence 23 4999999988887665554 567788874210 00011111111111000000 0000 0000000000
Q ss_pred hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRTALLLSLVTSGLNAAGSIVSIYFIDR 338 (579)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 338 (579)
.+..+++++ ++.++. .....++.....+.+.+|.|.++++.+ +.+...++.......++.+++.++.|+++||
T Consensus 232 ~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr 305 (412)
T TIGR02332 232 QRSMLREIF-TPAIML-----YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR 305 (412)
T ss_pred HHHHHHHhc-ChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 011223333 344432 223334445567778889999998743 3455677778888899999999999999999
Q ss_pred cCCchhh-HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCC
Q 008060 339 TGRKKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH 417 (579)
Q Consensus 339 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (579)
++||+.. .....+..++. ++..... .
T Consensus 306 ~~~r~~~~~~~~~~~~~~~-~~~~~~~--~-------------------------------------------------- 332 (412)
T TIGR02332 306 LKERKHHTALPYLFAAAGW-LLASATD--H-------------------------------------------------- 332 (412)
T ss_pred cCccHHHHHHHHHHHHHHH-HHHHhcC--C--------------------------------------------------
Confidence 9977753 33333333332 1111110 0
Q ss_pred CCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH
Q 008060 418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA 497 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~ 497 (579)
....+..+.+...+. ....+..+....|.+|++.|++++|+.+
T Consensus 333 ------------------------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~ 375 (412)
T TIGR02332 333 ------------------------------------NLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVIN 375 (412)
T ss_pred ------------------------------------HHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHH
Confidence 011111111111111 1112334456678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHH
Q 008060 498 TANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISV 532 (579)
Q Consensus 498 ~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~ 532 (579)
+.+++|++++|.+.|.+.+..| |...+.+.+++.+
T Consensus 376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~~ 411 (412)
T TIGR02332 376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAALLV 411 (412)
T ss_pred HhhhhhhhhhhhhcccccccCCCCchhHHHHHHHHh
Confidence 9999999999999999999875 8888877766543
No 15
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=7.7e-34 Score=297.49 Aligned_cols=374 Identities=18% Similarity=0.134 Sum_probs=280.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF 107 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~ 107 (579)
++|..+..+.+..+..........+++|.+.+++|.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 82 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV---GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV 82 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 34555555556555554555566678899999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060 108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT 187 (579)
Q Consensus 108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~ 187 (579)
+.+++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g- 161 (390)
T PRK03545 83 LFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG- 161 (390)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-
Confidence 9999999999999999999999999999998899999999999999999999999999999999999999999888777
Q ss_pred chhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHH
Q 008060 188 WRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK 266 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (579)
||+.|++.++++++..+. +..+||.|+ + + +...++..+
T Consensus 162 w~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~------------------------------------~~~~~~~~~ 200 (390)
T PRK03545 162 WRTTFLAIGGGALITLLLLIKLLPLLPS----E-H------------------------------------SGSLKSLPL 200 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-C------------------------------------cchHHHHHH
Confidence 999999999877766555 444565432 0 0 000123456
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060 267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV 346 (579)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 346 (579)
.+|+|.++......... .........+.+.++++..+.+....+.......++.++++++.++++||++||...
T Consensus 201 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~- 274 (390)
T PRK03545 201 LFRRPALVSLYLLTVVV-----VTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL- 274 (390)
T ss_pred HHhCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-
Confidence 77777765433332221 112233345666677665555666777777888888999999999999999987654
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060 347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (579)
.+..+..++..++....+
T Consensus 275 ~~~~~~~~~~~~l~~~~~-------------------------------------------------------------- 292 (390)
T PRK03545 275 IAIALLLVCLLLLLPAAN-------------------------------------------------------------- 292 (390)
T ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Confidence 444434333333322111
Q ss_pred cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060 427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i 506 (579)
..+...+...+.+.. .....+.......+..| +.|+.++|+.+...++|..+
T Consensus 293 --------------------------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~ 344 (390)
T PRK03545 293 --------------------------SEWHLSVLSIFWGIA-IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA 344 (390)
T ss_pred --------------------------hHHHHHHHHHHHHHH-HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence 011222222222222 22333334456667766 57899999999999999999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060 507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV 542 (579)
Q Consensus 507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (579)
||.+.|.+.|..|++..|.+.+++.++++++.+...
T Consensus 345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999888876554
No 16
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=100.00 E-value=2.1e-33 Score=298.04 Aligned_cols=384 Identities=20% Similarity=0.200 Sum_probs=264.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK---SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL 103 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~---~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~ 103 (579)
++++..+...+++.+.+++|...++...|.+.++++ .+..+..+.+.+.+..+++..++++++|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 445667777788899999999999999999999985 33333322244455566666699999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH
Q 008060 104 VADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY 175 (579)
Q Consensus 104 ~~~~l~~i~~ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~ 175 (579)
.++++++++++++++++++. .+++.|+++|++.|..++...++++|++|+++|+++.++...+...|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874 5899999999999999999999999999999999999999888888888888
Q ss_pred HHHHHhcc--------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhh
Q 008060 176 LINLAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKE 247 (579)
Q Consensus 176 ~l~~~l~~--------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (579)
.+...+.. ..+ ||+.|++.++++++...+...+||+|++.. +
T Consensus 178 ~~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~----------------------- 227 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R----------------------- 227 (432)
T ss_pred HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h-----------------------
Confidence 77655432 344 999999988877766555556677754210 0
Q ss_pred hhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 008060 248 SVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAA 327 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
+. .+..++++++++++.+...+.. .+.....++....|.|.++++..+.+....+.......++.++
T Consensus 228 -------~~--~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i 294 (432)
T PRK10406 228 -------AL--KEAGSLKGLWRNRRAFIMVLGF----TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFML 294 (432)
T ss_pred -------hh--cccccHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00 0012456677766554322211 1222334566778899998765444555666666666667788
Q ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCC
Q 008060 328 GSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKAS 407 (579)
Q Consensus 328 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (579)
+..+.|+++||++||+.+..+..+..+....+........
T Consensus 295 ~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 334 (432)
T PRK10406 295 IQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS---------------------------------------- 334 (432)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC----------------------------------------
Confidence 8889999999999999876655543333222221111000
Q ss_pred CCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc
Q 008060 408 SPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR 487 (579)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 487 (579)
..+..+..+.+.....+. ..+..+.+.+|.+|++
T Consensus 335 ---------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~ 368 (432)
T PRK10406 335 ---------------------------------------------SPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQ 368 (432)
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Confidence 011111111111111111 1234557789999999
Q ss_pred cchhhhHHHHHHHHH-HHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhh
Q 008060 488 FRGVCGGIAATANWI-SNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 488 ~~g~~~gi~~~~~~~-g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 540 (579)
.|++++|+.+..+++ .+...|.+.+.+ +..| +...+++.+++.+++.+..++
T Consensus 369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 369 VRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred ccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999887665 344577777754 5556 545566666666766666544
No 17
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=1.5e-33 Score=296.18 Aligned_cols=393 Identities=17% Similarity=0.170 Sum_probs=283.0
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
..+++|+.+..++++.+.++++....+++.|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA---ASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45678888999999999999999999999999999999998888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cC-cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060 185 PG-TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263 (579)
Q Consensus 185 ~~-~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
.+ +||+.|++.+++.++..+....+||++++...+.+.++..+..++..+.. ...+ ...+.....
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~ 228 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE-------------HRIA-NIVMTLAAA 228 (405)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc-------------hhhh-hhhhhhhHH
Confidence 43 49999998777666665556677888654332221111111111000000 0000 000000001
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK 343 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 343 (579)
.++. .++.+..... .................+.|.++.+..+.+..+.+.+.....++.+++.++.+++.||++||+
T Consensus 229 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~ 305 (405)
T TIGR00891 229 MVQS--AGKRWPTFVY-LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK 305 (405)
T ss_pred hhhh--hhhhhHHHHH-HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 1111 1111111111 111111222223445567788887655556777788888888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060 344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (579)
.+..+.....+....+... . .
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~-~--------------------------------------------------------- 326 (405)
T TIGR00891 306 AYVCSLLAGQLLIIPVFAI-G-A--------------------------------------------------------- 326 (405)
T ss_pred hhHHHHHHHHHHHHHHHHh-C-C---------------------------------------------------------
Confidence 8877765543322222211 1 0
Q ss_pred ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060 424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS 503 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g 503 (579)
..+...+.. ....+...+..+....+..|.+|++.||+++|+.+...++|
T Consensus 327 -----------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 376 (405)
T TIGR00891 327 -----------------------------NVAVLGLGL-FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLG 376 (405)
T ss_pred -----------------------------chHHHHHHH-HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHH
Confidence 011112222 22223333344555678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-cchhhHH
Q 008060 504 NLIVAQSFLSLTQAIG-TSWTFLI 526 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g-~~~~~~~ 526 (579)
+.++|.+.|.+.|..| |...+..
T Consensus 377 ~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 377 GALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999998 7655544
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=1.4e-33 Score=297.18 Aligned_cols=385 Identities=21% Similarity=0.227 Sum_probs=288.4
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
..+++|.++..+++..+.++++....+...|.+.+++|.++.+. +++.+.+.++..+++++.|+++||+|||+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM---GWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 45588889999999999999999999999999999999988888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred cCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060 185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263 (579)
Q Consensus 185 ~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
.+ ||+.|++.+++.++..+. ..++||+|++...+.+.++. +..
T Consensus 166 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------------------~~~ 209 (406)
T PRK11551 166 AA-WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----------------------------------APV 209 (406)
T ss_pred cC-HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------------------hhh
Confidence 76 999999888765555544 56678887543221110000 000
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK 343 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 343 (579)
..+.++.+..+.... .....+......+....|.|.++++.+. +....+.......++.+++.++.|+++||++||+
T Consensus 210 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 286 (406)
T PRK11551 210 LRALFGEGRATATLL--LWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR 286 (406)
T ss_pred HHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 111111111111111 1111222233445666788999888655 5566677778888889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060 344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (579)
.+..+.....++.+++....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 307 (406)
T PRK11551 287 VVLLIYAGILASLAALAAAPS----------------------------------------------------------- 307 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-----------------------------------------------------------
Confidence 887766555555443332110
Q ss_pred ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060 424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS 503 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g 503 (579)
.+. +....++..+...+..+...++..|.+|++.||++.|+.+....+|
T Consensus 308 ------------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 356 (406)
T PRK11551 308 ------------------------------FAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLG 356 (406)
T ss_pred ------------------------------HHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHH
Confidence 111 2222222222222334556678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhh
Q 008060 504 NLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
++++|.+.|.+.+..+ +...+...+...+++.++.+..
T Consensus 357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998755 4445555555555555554443
No 19
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.6e-40 Score=353.34 Aligned_cols=431 Identities=37% Similarity=0.648 Sum_probs=334.1
Q ss_pred HHHHHHhhhhhhhhhhhhhhhh--hhcccccc------hhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060 37 GIGGLLFGYDTGVISGALLYIR--DDFKSVDR------KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL 108 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp~i~--~~~~~s~~------~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l 108 (579)
.++.+..+++...++...+... .++..+.. +..+.+++.+...+|..+|++++|.++||+|||+.++++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4555778888888777766554 22222221 123458999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060 109 FFVGAVIMAAAP---NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP 185 (579)
Q Consensus 109 ~~i~~ll~~~a~---~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~ 185 (579)
..++.++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+....
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 99999999999999999999999999999999999999999999999999999888876553322
Q ss_pred --CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060 186 --GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263 (579)
Q Consensus 186 --~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
..||+.+++.++++++..+..+++||||+|+.++++.+++++.+++.++.+..+++.++..+..++. +..+..
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 240 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES-----QESKAS 240 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc-----ccccee
Confidence 1499999999999888877788899999999999999999988888655433333322222211111 111156
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK 343 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 343 (579)
+.++++++..++..+..+.+..+.++.+.....+|.|.+++..+..+. ........+..+++.+++.+++||+|||+
T Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~ 317 (451)
T PF00083_consen 241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRK 317 (451)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence 777788766556666666666666677777777888888877766554 33334455667788888889999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060 344 LLVISLSGVILSLGVLS-AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF 422 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (579)
+++.+..+.+++.+.+. ........
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 343 (451)
T PF00083_consen 318 LLIIGLLLMAICSLILGIIFFLGVSS------------------------------------------------------ 343 (451)
T ss_pred cccccccccccccccccccccccccc------------------------------------------------------
Confidence 99988888877776664 11110000
Q ss_pred CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHH
Q 008060 423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI 502 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~ 502 (579)
++...+..++..+++...+..+.++..+.+.+|++|++.|+++.|+....+++
T Consensus 344 ---------------------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i 396 (451)
T PF00083_consen 344 ---------------------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI 396 (451)
T ss_pred ---------------------------ccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 00012233455555666777788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHHH
Q 008060 503 SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKM 556 (579)
Q Consensus 503 g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (579)
+++++|.+...+.+..+....+.++++++++..++.++++||||+++.||++++
T Consensus 397 ~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 397 GGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 999999999988888886678888899888888888899999999999999875
No 20
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1e-32 Score=266.22 Aligned_cols=434 Identities=21% Similarity=0.254 Sum_probs=328.9
Q ss_pred HHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060 17 RECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF 96 (579)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~ 96 (579)
+|.+......+.+|...+....+++.+.+.....+.+.|.+.+.++.+..+. .++......|..+++..+|.++|++
T Consensus 64 ~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~---~llt~~v~~gmllga~~w~l~~d~~ 140 (528)
T KOG0253|consen 64 DEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA---PLLTLSVFLGMLVGAMVWGLSADTI 140 (528)
T ss_pred hhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh---hHHHHHHHhhhhhhhhhhheehhhh
Confidence 3444455567889999999999999998888888999999999999887777 9999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060 97 GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL 176 (579)
Q Consensus 97 Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~ 176 (579)
|||+.+.+.....++...+.+.++|+..+.++|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.++...
T Consensus 141 grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~ 218 (528)
T KOG0253|consen 141 GRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEAL 218 (528)
T ss_pred hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 888888899999999998887777 899999999999
Q ss_pred HHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhh---------h
Q 008060 177 INLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK---------E 247 (579)
Q Consensus 177 l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 247 (579)
++.......| |||.....+.+..+.....+++||+||++..+++.+++.+.++++...|..+....... +
T Consensus 219 law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 219 LAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred HHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 9988888887 99999988888888888889999999999999999999998888876554332111100 0
Q ss_pred hh--hhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------
Q 008060 248 SV--DKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG------------------ 307 (579)
Q Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 307 (579)
.. ++.+....+....+...++ .|.+++..+.....++. +...++....+....++...
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~ 375 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRAN 375 (528)
T ss_pred hhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhc
Confidence 00 0001111122223344444 45555555544433332 22223333322222222111
Q ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCC
Q 008060 308 -FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTC 386 (579)
Q Consensus 308 -~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (579)
-.+......-........++|.++.+.++||+|||+.+...+++..++.+++.......
T Consensus 376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn-------------------- 435 (528)
T KOG0253|consen 376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN-------------------- 435 (528)
T ss_pred CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc--------------------
Confidence 01223334444566777999999999999999999999999888887777665543211
Q ss_pred CCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHH
Q 008060 387 PDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYII 466 (579)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (579)
....+.+..-
T Consensus 436 ----------------------------------------------------------------------~~tvllf~ar 445 (528)
T KOG0253|consen 436 ----------------------------------------------------------------------AYTVLLFTAR 445 (528)
T ss_pred ----------------------------------------------------------------------hhHHHHHHHH
Confidence 1233333344
Q ss_pred hhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 467 FFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
.|.-+.....+.|..|++|+..|+++.|.+...+.+|+++.|++. +........+..+++++++++++.+.++.-|||
T Consensus 446 afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 446 AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 444555677889999999999999999999999999999999888 444455667888899999999998888888999
Q ss_pred CCCh
Q 008060 547 GLPI 550 (579)
Q Consensus 547 ~~~~ 550 (579)
+|..
T Consensus 524 GR~l 527 (528)
T KOG0253|consen 524 GRSL 527 (528)
T ss_pred CCCC
Confidence 9863
No 21
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=100.00 E-value=6.1e-33 Score=290.76 Aligned_cols=379 Identities=14% Similarity=0.101 Sum_probs=281.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF 107 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~ 107 (579)
..|.....++++.+.... ...+++.+|.+++|+|.+..+. +++.+.+.+++.+++++.|+++||+|||+++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~ 82 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA---ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLL 82 (393)
T ss_pred hHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHH
Confidence 345555555555444333 3667899999999999998888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060 108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT 187 (579)
Q Consensus 108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~ 187 (579)
+++++.+++++++|++.+++.|+++|++.+...+....++.+++| ++|+++++++..+...|..+++.+++++.++..+
T Consensus 83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~ 161 (393)
T PRK09705 83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET 161 (393)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999997 7799999999999999999999999998887645
Q ss_pred chhHHHHhhHHHHHHHHHHHhcc-CChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHH
Q 008060 188 WRWMLGVAGIPALLQFILMLLLP-ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK 266 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~~~~lp-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (579)
||+.+.+.++..++..+.++... +.|+ + + +++ +....+
T Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~-------------------------------~~~---~~~~~~ 200 (393)
T PRK09705 162 WYQTLAWWALPAVVALFAWWWQSAREVA----S---S-------------------------------HKT---TTTPVR 200 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc----c---c-------------------------------cCC---CcCCcc
Confidence 99988776665544433333321 1111 0 0 000 011223
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060 267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV 346 (579)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 346 (579)
.+++++.+...+ ..+....++.....|.|.++++.+. +...++....+..++.++++++.+++.||++||+.+.
T Consensus 201 ~l~~~~~~~l~~-----~~~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~ 274 (393)
T PRK09705 201 VVFTPRAWTLGV-----YFGLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLM 274 (393)
T ss_pred cccCHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 445555443222 1222334566777889999988544 6777788888899999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060 347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (579)
.+..+..++..++..... .
T Consensus 275 ~~~~l~~~~~~~~~~~~~-~------------------------------------------------------------ 293 (393)
T PRK09705 275 LALVLQLVGFCGFIWLPL-Q------------------------------------------------------------ 293 (393)
T ss_pred HHHHHHHHHHHHHHHccc-h------------------------------------------------------------
Confidence 877766666554432211 0
Q ss_pred cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccc-ccccchhhhHHHHHHHHHHHH
Q 008060 427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIY-PLRFRGVCGGIAATANWISNL 505 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~gi~~~~~~~g~~ 505 (579)
.. .....+.+.+.+ +..+.......+.. |++.+|+.+|+.+..+++++.
T Consensus 294 ---------------------------~~--~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 343 (393)
T PRK09705 294 ---------------------------LP--VLWAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG 343 (393)
T ss_pred ---------------------------HH--HHHHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 111122222222 22333334445555 467899999999999999999
Q ss_pred HHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060 506 IVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVPETKGLP 549 (579)
Q Consensus 506 i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (579)
++|.+.|++.|..| +...|.+.++++++..++.+.+.||++++.
T Consensus 344 ~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 344 LAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999987 777788888888888777778888887764
No 22
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=100.00 E-value=1.1e-32 Score=294.24 Aligned_cols=400 Identities=13% Similarity=0.080 Sum_probs=271.7
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
++++|.++..+++.....+.++..++...|.+.++ |.+..+. +++.+++.+++.++++++|+++||+|||++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~---g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~ 99 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 99 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH---HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence 34566666767777777788877788889999888 9988888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHH-HHHHHHHH
Q 008060 106 DFLFFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF-LSYLINLA 180 (579)
Q Consensus 106 ~~l~~i~~ll~~~a----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~-ig~~l~~~ 180 (579)
.++.+++.++++++ .+++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++..
T Consensus 100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 179 (452)
T PRK11273 100 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG 179 (452)
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999988875 37888999999999999988888888899999999999999999999999874 45554433
Q ss_pred hccCcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060 181 FTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259 (579)
Q Consensus 181 l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
+.... +||+.|++.+++.++..++ .+++||+|+....+. .++.+. +. .+..+. +++++.+
T Consensus 180 ~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~-------------~~~~~~-~~~~~~~ 240 (452)
T PRK11273 180 MAWFN-DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN---DY-------------PDDYNE-KHEQELT 240 (452)
T ss_pred HHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh---cc-------------cccccc-ccCCCcc
Confidence 33333 5999999988776665544 677788875321111 110000 00 000000 0000000
Q ss_pred hhhh-HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060 260 EKIN-LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR 338 (579)
Q Consensus 260 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 338 (579)
.+.. ....+|++.+|...+...+. ....+....|.|.|+++..+.+...++....+..++.+++.++.|+++||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr 315 (452)
T PRK11273 241 AKQIFMQYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 315 (452)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 12356666665543332222 22345667789999988655456667777778888889999999999999
Q ss_pred c--CCchhhH-HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCccc
Q 008060 339 T--GRKKLLV-ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCA 415 (579)
Q Consensus 339 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (579)
+ +||+... ....+..++.+++... . ..
T Consensus 316 ~~~~r~~~~~~~~~~l~~~~~~~~~~~-~-~~------------------------------------------------ 345 (452)
T PRK11273 316 VFRGNRGATGVFFMTLVTIATIVYWLN-P-AG------------------------------------------------ 345 (452)
T ss_pred HccCCcchHHHHHHHHHHHHHHHHHHh-c-cc------------------------------------------------
Confidence 8 4444322 2222222222222111 1 00
Q ss_pred CCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH
Q 008060 416 SHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI 495 (579)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi 495 (579)
..+...+.+..... ...+.......+..|.+|++.||+++|+
T Consensus 346 -------------------------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 387 (452)
T PRK11273 346 -------------------------------------NPTVDMACMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGF 387 (452)
T ss_pred -------------------------------------ChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcChhhhhhHHHH
Confidence 01111121111111 1111112223456799999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060 496 AATANWISNLI-VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 496 ~~~~~~~g~~i-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
.++..++|+.+ +|.+.|.+.|..|++..|++.+++++++.++...+
T Consensus 388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 388 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 79999999999999999999998888887765543
No 23
>PRK09952 shikimate transporter; Provisional
Probab=100.00 E-value=2.9e-32 Score=289.61 Aligned_cols=391 Identities=14% Similarity=0.144 Sum_probs=270.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhc--ccccchhhHHHHHH-----HHHHHHHHHHHHhHhhhhccccc
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLY-IRDDF--KSVDRKTLLQESIV-----SMAVAGAIIGAAIGGWMNDRFGR 98 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~--~~s~~~~~~~g~l~-----s~~~lg~~i~~l~~G~lsDr~Gr 98 (579)
.++++.+....++.+.+++|...++.+.|. +.+++ +.++.. +++. ++.+++..+++++.|+++||+||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Gr 93 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM----GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGR 93 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 344567778888999999999999988875 55555 555542 4332 45667788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHH
Q 008060 99 RTSILVADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSG 170 (579)
Q Consensus 99 r~vl~~~~~l~~i~~ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG 170 (579)
|++++++.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..+....+..+|
T Consensus 94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999987 58899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc--------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH
Q 008060 171 QFLSYLINLAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEI 242 (579)
Q Consensus 171 ~~ig~~l~~~l~~--------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (579)
..++..+...+.. ..+ ||+.|++.+++.++...+....||+|++...+++.++
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------ 234 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------ 234 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------------------
Confidence 9988877766542 344 9999998887765554445567888765322111000
Q ss_pred HHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 008060 243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS 322 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (579)
.+ .+......++++++.+...+.. .+......+....|.|.|+++..+.+...........+
T Consensus 235 ------------~~--~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g 296 (438)
T PRK09952 235 ------------AK--KRIPVIEALLRHPGAFLKIIAL----RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVG 296 (438)
T ss_pred ------------cc--ccCCHHHHHHHchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 0001112244555444322211 12233345566778888887654444444444444556
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccc
Q 008060 323 GLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMK 402 (579)
Q Consensus 323 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (579)
+..+++.++.|+++||++||+.+..+.++..++...+........
T Consensus 297 ~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 341 (438)
T PRK09952 297 GLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQS----------------------------------- 341 (438)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------------------------------
Confidence 667888899999999999999888776655544433322211000
Q ss_pred cccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc
Q 008060 403 CLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE 482 (579)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (579)
..+..+....+.....+ ...+..+++..|
T Consensus 342 --------------------------------------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e 370 (438)
T PRK09952 342 --------------------------------------------------IFWIVFFSIMLANIAHD-MVVCVQQPMFTE 370 (438)
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 01111112222222221 223455688899
Q ss_pred ccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 483 IYPLRFRGVCGGIAATAN-WISNLIVAQSFLSLTQAI--GTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 483 ~~p~~~~g~~~gi~~~~~-~~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
.+|++.|+++.|+.+..+ .+++.++|.+.+.+.+.. +|...+.+.+++++++.+..+ ..+|+
T Consensus 371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~ 435 (438)
T PRK09952 371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDN 435 (438)
T ss_pred HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence 999999999999976654 489999999999998854 367777878888887777654 45654
No 24
>PRK03893 putative sialic acid transporter; Provisional
Probab=100.00 E-value=1.7e-32 Score=296.61 Aligned_cols=415 Identities=17% Similarity=0.164 Sum_probs=282.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~ 106 (579)
+++|+.+..++++.+.+.++....++.+|.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 92 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA---ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI 92 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 456778888889999999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
++.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHH-Hhhh--hhhhhHHhhccchhh-
Q 008060 187 TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR-DLKE--SVDKEIEEEGSSEKI- 262 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~- 262 (579)
||+.|++.++..++..+....+||++++...+++.++.++..+.....+....... .... ...............
T Consensus 173 -w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
T PRK03893 173 -WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV 251 (496)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 99999876555444444455567775543222111110111110000000000000 0000 000000000000000
Q ss_pred ---------hHH-HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008060 263 ---------NLV-KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVS 332 (579)
Q Consensus 263 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (579)
.+. ...+.+..+...........+..+...+....+.|.|+++..+.+....+.+.....++.+++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~ 331 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG 331 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000000000111111111111111122355678999975544567778888888899999999999
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCC
Q 008060 333 IYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG 412 (579)
Q Consensus 333 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (579)
|+++||++||+++..+..+..+..+++.....
T Consensus 332 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 363 (496)
T PRK03893 332 GFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG------------------------------------------------ 363 (496)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhccc------------------------------------------------
Confidence 99999999999887766555544433222110
Q ss_pred cccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhh
Q 008060 413 FCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVC 492 (579)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 492 (579)
..+.......+...+.+.+..+....+..|.+|++.||++
T Consensus 364 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 403 (496)
T PRK03893 364 ----------------------------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG 403 (496)
T ss_pred ----------------------------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence 0111122222222233334445555778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060 493 GGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA 533 (579)
Q Consensus 493 ~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 533 (579)
+|+.+....+|+.++|.+.|.+.+..|+...+...++...+
T Consensus 404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 404 LGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777665544433
No 25
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=2.9e-32 Score=294.08 Aligned_cols=392 Identities=13% Similarity=0.026 Sum_probs=287.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF 107 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~ 107 (579)
++|..+..++++.++..+|.++.+..+|.+.+++|.+..+. +|+.+.|.+++.++++++|+++||+|||++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~---~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL---LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35778899999999999999999999999999999988888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
+++++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.+..+
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999888888887776 67899999999999999999999999999999887
Q ss_pred cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHH------------HHhhcCCCchhhh-HH----Hhhhh
Q 008060 187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAI------------LRKVYPAHEVETE-IR----DLKES 248 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~----~~~~~ 248 (579)
|||.|++...++++..++ .+++||.|+.. +.+.+..... ++........... .. .....
T Consensus 160 -wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (495)
T PRK14995 160 -WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL 236 (495)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence 999999988776666555 56677765311 1111111100 0000000000000 00 00000
Q ss_pred hhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 008060 249 VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAG 328 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (579)
......+.+..++.-..+++|+|.++...+..+ +.........++.|.|++...+.+...+++...+..++..++
T Consensus 237 ~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~ 311 (495)
T PRK14995 237 GLFIRTQLAASRPMIDMRLFTHRIILSGVVMAM-----TAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS 311 (495)
T ss_pred HHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 000001111222223356788877654333322 223345566678899999887778899999999999999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCC
Q 008060 329 SIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASS 408 (579)
Q Consensus 329 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (579)
.++.|++.||+|+|+.+..+..+..++..++.......
T Consensus 312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~------------------------------------------ 349 (495)
T PRK14995 312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFST------------------------------------------ 349 (495)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC------------------------------------------
Confidence 99999999999999988888877777766554432100
Q ss_pred CCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc
Q 008060 409 PDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF 488 (579)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 488 (579)
..+......++.+.+.+.. .+.......+..|++.
T Consensus 350 --------------------------------------------~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~ 384 (495)
T PRK14995 350 --------------------------------------------QQWQAWGLMALLGFSAASA-LLASTSAIMAAAPPEK 384 (495)
T ss_pred --------------------------------------------chHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHHh
Confidence 0122222333333333222 2334456667889999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 489 RGVCGGIAATANWISNLIVAQSFLSLTQA 517 (579)
Q Consensus 489 ~g~~~gi~~~~~~~g~~i~~~~~g~~~~~ 517 (579)
++.+.++.++...+|+.+|+.+.|.+.+.
T Consensus 385 ~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 385 AAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 26
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=9.2e-33 Score=285.62 Aligned_cols=355 Identities=12% Similarity=0.027 Sum_probs=252.8
Q ss_pred hhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh
Q 008060 43 FGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP 122 (579)
Q Consensus 43 ~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~ 122 (579)
+......+++.+|.+.+|+|.+..+. |++.+.+.+++.+++++.|+++||+|||++++.++.....+.+.....+++
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 79 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEEL---GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY 79 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence 34456678899999999999998888 999999999999999999999999999998766655555544333334799
Q ss_pred hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHH
Q 008060 123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQ 202 (579)
Q Consensus 123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~ 202 (579)
+.+++.|+++|++.+. .+.....++|++|+++|++++++...+..+|.++++++++++.+..+ ||+.|++.++++++.
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence 9999999999999986 55666667999999999999999999999999999999999988777 999999988877766
Q ss_pred HHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHH
Q 008060 203 FIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGV 281 (579)
Q Consensus 203 ~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (579)
.++ ++++||+|++.. +.. +.+ +...++++++++|.+|...+.
T Consensus 158 ~~~~~~~lp~~p~~~~---~~~--------------------------~~~------~~~~~~~~ll~~~~~~~~~~~-- 200 (368)
T TIGR00903 158 IILVLAALPALPFQAA---EGF--------------------------GFK------DAVKEFGALAGRKDLWIIGAI-- 200 (368)
T ss_pred HHHHHHHcCCCCCCCC---CCc--------------------------chH------HHHHHHHHHHcChhHHHHHHH--
Confidence 555 667899875310 000 000 001235678888887654433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhhHH-HHHHHHHHHH
Q 008060 282 GLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK---KLLVI-SLSGVILSLG 357 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~ 357 (579)
.++....++.+..|+|.|+++.+. +.. .+.......+.+.++ .++++||..|| +.... ...+.++...
T Consensus 201 ---~~~~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~ 272 (368)
T TIGR00903 201 ---LGFGVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL 272 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333444567788899999988665 443 444444444444444 57788877543 33222 2222222222
Q ss_pred HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccc
Q 008060 358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLC 437 (579)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (579)
.+....+
T Consensus 273 ~~~~~~~------------------------------------------------------------------------- 279 (368)
T TIGR00903 273 ALAFELN------------------------------------------------------------------------- 279 (368)
T ss_pred HHHHccc-------------------------------------------------------------------------
Confidence 2211100
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 438 HDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA 517 (579)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~ 517 (579)
.+. .+.......++..+..+..+++.+|.+|++.||+++|+.+..+++++.++|.+.+.+..
T Consensus 280 ----------------~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~- 341 (368)
T TIGR00903 280 ----------------RLA-LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS- 341 (368)
T ss_pred ----------------cHH-HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-
Confidence 111 12222222233333334566889999999999999999999999999999999988774
Q ss_pred cccchhhHHHHHHHHHHHHHhh
Q 008060 518 IGTSWTFLIFGVISVAALLFVL 539 (579)
Q Consensus 518 ~g~~~~~~~~~~~~~~~~~~~~ 539 (579)
|....|.++++..+++.+..+
T Consensus 342 -~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 342 -SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred -CHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888877754
No 27
>PRK15075 citrate-proton symporter; Provisional
Probab=100.00 E-value=6.3e-32 Score=286.95 Aligned_cols=364 Identities=18% Similarity=0.182 Sum_probs=247.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHH-----HHHHHHHHHHhHhhhhccccchHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM-----AVAGAIIGAAIGGWMNDRFGRRTSI 102 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~-----~~lg~~i~~l~~G~lsDr~Grr~vl 102 (579)
.|++....++++.+.+++|+..++...|.+.++++.++.+.. .+..+. ..++..+++++.|+++||+|||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 455578888999999999999999999999999998776651 222222 2333457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHH
Q 008060 103 LVADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS 174 (579)
Q Consensus 103 ~~~~~l~~i~~ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig 174 (579)
+.+.++++++.++++++++++ .+++.|+++|++.+...+....+++|++|+++|++++++...+..+|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 468999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHhc--------cCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhh
Q 008060 175 YLINLAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK 246 (579)
Q Consensus 175 ~~l~~~l~--------~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (579)
+.+++.+. +..+ ||+.|++..+...+........||++++..+
T Consensus 170 ~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~---------------------------- 220 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLAR---------------------------- 220 (434)
T ss_pred HHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh----------------------------
Confidence 88777653 3445 9999987554322222212223333211000
Q ss_pred hhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 008060 247 ESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNA 326 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (579)
+++.+.+...++..+++..+ +... ...+.+...++....|.|.|+++..+.+..+.++......++++
T Consensus 221 --------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~ 288 (434)
T PRK15075 221 --------KHRPSMREIFRSLAANWRIV---LAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNF 288 (434)
T ss_pred --------hhccccccHHHHHHHhHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00000011112222322221 1111 22223344567788889999987544466667777788888899
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH-HHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccccccc
Q 008060 327 AGSIVSIYFIDRTGRKKLLVISLSGVILSLGV-LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLK 405 (579)
Q Consensus 327 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (579)
++.++.|+++||++||+.+..+..+..+.... +..... ..
T Consensus 289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------------- 329 (434)
T PRK15075 289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA-AP-------------------------------------- 329 (434)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-CC--------------------------------------
Confidence 99999999999999999877655443322211 111111 00
Q ss_pred CCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc
Q 008060 406 ASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP 485 (579)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 485 (579)
..........+...+++ ...+..+.+..|.+|
T Consensus 330 -----------------------------------------------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p 361 (434)
T PRK15075 330 -----------------------------------------------SFARMLAVELWLSFLYG-SYNGAMVVALTEVMP 361 (434)
T ss_pred -----------------------------------------------chHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCC
Confidence 00011111111222222 223344567899999
Q ss_pred cccchhhhHHHHHHHHH-HHHHHHHHHHHHHHhcccc
Q 008060 486 LRFRGVCGGIAATANWI-SNLIVAQSFLSLTQAIGTS 521 (579)
Q Consensus 486 ~~~~g~~~gi~~~~~~~-g~~i~~~~~g~~~~~~g~~ 521 (579)
++.|+++.|+.+..+.. ++.++|.+.|.+.|..|+.
T Consensus 362 ~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 362 AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999999997655554 5888999999999998864
No 28
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=284.83 Aligned_cols=440 Identities=22% Similarity=0.322 Sum_probs=313.1
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcc-ccc----chhhHHHHHHHHHHHHHHHHHHhHhhhhccccchH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK-SVD----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT 100 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~-~s~----~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~ 100 (579)
.++..+.+.+...+.+.+.+|..+++.+.|.+...|. .+. -..-..+.+..+..+|..+||++.|++.||+|||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 5566778888889999999999999999998876543 221 11112388999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH
Q 008060 101 SILVADFLFFVGAVIMAAAP-------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL 173 (579)
Q Consensus 101 vl~~~~~l~~i~~ll~~~a~-------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i 173 (579)
++...++++.+++++++++. -.+++...|+++|+|.|+-+|...++.+|....+.||...+...+..++|...
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 99999999999999887753 25788899999999999999999999999999999999998888888887777
Q ss_pred HHHHHHHhcc----CcC----------cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCH-HHHHHHHHhhcCCCch
Q 008060 174 SYLINLAFTR----APG----------TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGRE-EEAQAILRKVYPAHEV 238 (579)
Q Consensus 174 g~~l~~~l~~----~~~----------~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~-~~~~~~~~~~~~~~~~ 238 (579)
|.+++-.+.. ..+ -||..|.+.+++.++.+...+.+||++++.....+. +.+. .+..+....
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~ 272 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV 272 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc
Confidence 7766655432 111 399999999999888888888999999876332211 1111 111111111
Q ss_pred hhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH---
Q 008060 239 ETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTAL--- 315 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 315 (579)
+.+.++. ........+.....+.+.+..+ .-+.++ +....++..=.+++....+...+++..+..+.....
T Consensus 273 ~~~~~~~----~~~~~~~~~~~~~~F~~~f~~~-hg~~Ll-gt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~ 346 (538)
T KOG0252|consen 273 DIEAEST----AESDVPPPSNSFGLFSRLFLRW-HGKHLL-GTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHEL 346 (538)
T ss_pred ccchhhc----cccCCCCcccccchHHHHHHHH-HHHHHH-HHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHH
Confidence 0000000 0000011111122233444433 223333 333444444445666666777777766654332222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCc
Q 008060 316 -----LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYS 390 (579)
Q Consensus 316 -----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (579)
....+...+.++|.++...++|++|||+..+.+++++.+..+.+....+...
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~----------------------- 403 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE----------------------- 403 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-----------------------
Confidence 1222333334557777888999999999999999999988887776543100
Q ss_pred cccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhcc
Q 008060 391 SAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSP 470 (579)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (579)
...+. ++...+..++...
T Consensus 404 ------------------------------------------------------------~~~Gf--~v~y~l~~ff~NF 421 (538)
T KOG0252|consen 404 ------------------------------------------------------------NTIGF--VVLYSLTFFFGNF 421 (538)
T ss_pred ------------------------------------------------------------ccCce--eehHHHHHHHHhc
Confidence 00122 4445555556666
Q ss_pred CcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-----hcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 471 GMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ-----AIGTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 471 ~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
|.......+.+|.+|++.||++.|+....+..|++++...++++.+ ..|.+..+++++++++++.++.+ ++|||
T Consensus 422 GPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEt 500 (538)
T KOG0252|consen 422 GPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPET 500 (538)
T ss_pred CCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeecc
Confidence 7677778999999999999999999999999999999999999999 78999999999999999988864 57899
Q ss_pred CCCChHHHHHHHHhh
Q 008060 546 KGLPIEEIEKMLELR 560 (579)
Q Consensus 546 ~~~~~~~~~~~~~~~ 560 (579)
|++++||++++.+.+
T Consensus 501 k~~~leei~~e~~~~ 515 (538)
T KOG0252|consen 501 KGKSLEEISNEEESN 515 (538)
T ss_pred cccCHHHhcChhhcc
Confidence 999999986554443
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=100.00 E-value=1.2e-32 Score=287.43 Aligned_cols=392 Identities=19% Similarity=0.213 Sum_probs=286.8
Q ss_pred HHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 008060 40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA 119 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a 119 (579)
++...++...++...|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 79 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQY---GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA 79 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhH---HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999998888 999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHH
Q 008060 120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA 199 (579)
Q Consensus 120 ~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~ 199 (579)
++++.+++.|++.|++.+...+....++.|++|+++|++++++......+|..+++.+++.+.+..+ ||+.|++.+++.
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 158 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLG 158 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888777 999999998877
Q ss_pred HHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHH
Q 008060 200 LLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI 278 (579)
Q Consensus 200 l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (579)
++..+. +++.||+|+... ..+.++.....+.. . .+.+.+++++..+...++.+++|.++...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
T TIGR00893 159 IIWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGL-------------L--AEQQGKGPSTPKKYQIKELLKDRRVWGLAL 222 (399)
T ss_pred HHHHHHhhheecCCCCccc-cCCHHHHhhcchhh-------------c--cccccccccCCCccchHHHhcCHHHHHHHH
Confidence 766665 444566543110 00111100000000 0 000001111222345667778777654433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHHHHHHHHHH
Q 008060 279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV-ISLSGVILSLG 357 (579)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~ 357 (579)
.. +...........+.|.++++..+.+....++......++.+++.++.|++.||++||+... .......++.+
T Consensus 223 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
T TIGR00893 223 GQ-----FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL 297 (399)
T ss_pred HH-----HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 32 2333455667778899988766667777788888888889999999999999999986221 11111111111
Q ss_pred HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccc
Q 008060 358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLC 437 (579)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (579)
+...........
T Consensus 298 ~~~~~~~~~~~~-------------------------------------------------------------------- 309 (399)
T TIGR00893 298 VLSLLMFATNYV-------------------------------------------------------------------- 309 (399)
T ss_pred HHHHHHHHhccc--------------------------------------------------------------------
Confidence 111110000000
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 438 HDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA 517 (579)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~ 517 (579)
+..+ .........++..+..+..+++..|.+|++.||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 310 --------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 310 --------------NIPY--AALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred --------------hhHH--HHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence 0011 222222223333345677788999999999999999999999999999999999999999
Q ss_pred cc-cchhhHHHHHHHHHHHHHhhh
Q 008060 518 IG-TSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 518 ~g-~~~~~~~~~~~~~~~~~~~~~ 540 (579)
.| +...|.+.+++.+++.+..++
T Consensus 374 ~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 374 TGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Confidence 88 988999888888887766543
No 30
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=100.00 E-value=1.4e-32 Score=285.47 Aligned_cols=371 Identities=19% Similarity=0.141 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
.+....+..+..+. ....++..|.+.+++|.+..+. +++.+++.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 5 VLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV---AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred EeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 34444444444443 5567899999999999998888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
+.++++++++++.+++.|++.|++.+...+.....+.+++| ++|++++++...+.++|..+++.+.+.+.+..+ ||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 158 (377)
T TIGR00890 81 GFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHH
Confidence 99999999999999999999999999888888888999997 569999999999999999887777767666665 9999
Q ss_pred HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060 192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT 270 (579)
Q Consensus 192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (579)
|++.+++.++..+. +++++++|+... +.+ ++.+.+..+.++.+++
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~~~~~~ 204 (377)
T TIGR00890 159 FIYMGIIFLLVIVLGAFLIGYPPGQLI-KTN---------------------------------IEVSVKDYTVWEMLRT 204 (377)
T ss_pred HHHHHHHHHHHHHHHHHheecCchhcc-ccC---------------------------------cccchhhhhHHHHHcC
Confidence 99999887776666 444554432100 000 0000011234566777
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060 271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS 350 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 350 (579)
+.++...+.... ..........+.+.+.++.+. +....+.......++.++++++.|++.||++||+.+..+..
T Consensus 205 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 278 (377)
T TIGR00890 205 PQFWVLYLSFFL-----NAVSGLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG 278 (377)
T ss_pred ccHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 766543332221 112223333445666666554 55566777788888899999999999999999999888887
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060 351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN 430 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (579)
+..++.+++......
T Consensus 279 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 293 (377)
T TIGR00890 279 ISAVGMAAMLFIPML----------------------------------------------------------------- 293 (377)
T ss_pred HHHHHHHHHHHcccc-----------------------------------------------------------------
Confidence 777776655432110
Q ss_pred cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060 431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS 510 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~ 510 (579)
..+.......+.....+ ...+....+..|.+|++.|+++.|+.+....+|..++|.+
T Consensus 294 ----------------------~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 350 (377)
T TIGR00890 294 ----------------------NDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI 350 (377)
T ss_pred ----------------------hhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 01111222222222222 2234445678899999999999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHH
Q 008060 511 FLSLTQAIGTSWTFLIFGVISVAALL 536 (579)
Q Consensus 511 ~g~~~~~~g~~~~~~~~~~~~~~~~~ 536 (579)
.|.+.+..||+..|.+.+++.+++.+
T Consensus 351 ~g~l~~~~g~~~~f~~~~~~~~~~~~ 376 (377)
T TIGR00890 351 ASHALTEIGFEYTFIVTGAFALTSLA 376 (377)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 99999999999999988887777643
No 31
>PRK10091 MFS transport protein AraJ; Provisional
Probab=100.00 E-value=3.6e-31 Score=276.47 Aligned_cols=372 Identities=13% Similarity=0.100 Sum_probs=272.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
.+..+.+..++.+.......+.+|.+.+++|.+..+. |++.+.+.+++.++++++|+++||+|||+++..+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA---GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH---hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 3455666778888888889999999999999998888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
+.+++++++|++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++.+++++.+..+ ||+.
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~ 159 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYT 159 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHH
Confidence 999999999999999999999999999888888999999999999999999999999999999999999988776 9999
Q ss_pred HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060 192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT 270 (579)
Q Consensus 192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (579)
|++.+++.++..+. ++.+||.++ +.+. +..+..+.+++
T Consensus 160 f~~~~~~~~~~~~~~~~~lp~~~~----~~~~-------------------------------------~~~~~~~~~~~ 198 (382)
T PRK10091 160 FLLIAVFNIAVLASIYFWVPDIRD----EAKG-------------------------------------GLREQFHFLRS 198 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc----cccc-------------------------------------CHHHHHHHhcC
Confidence 99998876665554 455677532 0000 00011233455
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060 271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS 350 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 350 (579)
+..+...+.. +....+......+.+.++++..+.+....+++.....++.+++.++.+++.||+++|+.+..+..
T Consensus 199 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~ 273 (382)
T PRK10091 199 PAPWLIFAAT-----MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDF 273 (382)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHH
Confidence 5444322211 11122233334455666665445567778888888899999999999999999999999888887
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060 351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN 430 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (579)
+.+++.+++....+.
T Consensus 274 ~~~i~~~~~~~~~~~----------------------------------------------------------------- 288 (382)
T PRK10091 274 IIVLALLMLFFFGGM----------------------------------------------------------------- 288 (382)
T ss_pred HHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence 777766554432210
Q ss_pred cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060 431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS 510 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~ 510 (579)
.+...+...+...+......+.......+..|++.++.+ ..+....+|++++|.+
T Consensus 289 -----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~ 343 (382)
T PRK10091 289 -----------------------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYC 343 (382)
T ss_pred -----------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHH
Confidence 112222222222222111122222334444455555544 3467788999999999
Q ss_pred HHHHHHh-cccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 511 FLSLTQA-IGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 511 ~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
.|.+.|. .+|+..+.+.++++++.........+
T Consensus 344 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 344 GGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred hHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 9999996 57988888888777776665544433
No 32
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=100.00 E-value=1.7e-31 Score=283.89 Aligned_cols=406 Identities=14% Similarity=0.071 Sum_probs=280.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060 29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL 108 (579)
Q Consensus 29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l 108 (579)
++..+....+.....+.++..+....|.+.+ +|.+..+. +++.+++.++..+++++.|+++||+|||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~ 100 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL---GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh---HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence 5666677777778888888888888888876 59988888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 109 FFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 109 ~~i~~ll~~~a----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
.+++.++.++. ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+.++|..+++.+.+...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99998887764 46778889999999999999898889999999999999999999999999999998877765443
Q ss_pred cCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060 185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263 (579)
Q Consensus 185 ~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
..+||+.|++.++++++..+. ++++||+|+....+...+. +. +... +..++ .+.+.+.++..
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~------~~~~~-~~~~~~~~~~~ 243 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY--------RN--DYPD------DYNEK-AEQELTAKEIF 243 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc--------cc--cccc------ccccc-cccccchHHHH
Confidence 224999999998887775544 6667887653211000000 00 0000 00000 00000000111
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK 343 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 343 (579)
....+|++.++...+... +.+...+....|.|.|+++..+.+...+++...+..++++++.++.|+++||+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 244 MQYVLPNKLLWYIAIANV-----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHccCchHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 124567776655433322 223345567778999998865556677788888888889999999999999996543
Q ss_pred hhHHHHHHHHHHHH-HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060 344 LLVISLSGVILSLG-VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF 422 (579)
Q Consensus 344 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (579)
....+.....+..+ ++......
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 341 (438)
T TIGR00712 319 RGATGVFFMTLVTIAVIVYWMNP--------------------------------------------------------- 341 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcC---------------------------------------------------------
Confidence 32333322222211 11111110
Q ss_pred CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHH
Q 008060 423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI 502 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~ 502 (579)
.+..+...+.++..+ ....+..........|.+|++.||+++|+.+..+++
T Consensus 342 ----------------------------~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 392 (438)
T TIGR00712 342 ----------------------------AGNPLVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 392 (438)
T ss_pred ----------------------------CCchHHHHHHHHHHH-HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHh
Confidence 001121122222221 111121112224567899999999999999999888
Q ss_pred HH-HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 503 SN-LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 503 g~-~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
++ +++|.+.|.+.|..|+...|.+.+++.+++.+..+++.||.|
T Consensus 393 gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 393 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 75 689999999999999999999999888888888777777755
No 33
>PRK03699 putative transporter; Provisional
Probab=100.00 E-value=2.9e-31 Score=278.30 Aligned_cols=376 Identities=12% Similarity=0.099 Sum_probs=277.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD 106 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~ 106 (579)
..+++.....++..+..+......++.+|.+.+++|.+..+. +++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~ 79 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM---SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF 79 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345667777788888999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|+++++......++|..++|.+.+.+.....
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 159 (394)
T PRK03699 80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999899999999999999999999988999999999999888765333
Q ss_pred cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHH
Q 008060 187 TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK 266 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (579)
+||+.|.+.+++.++..++.++ .+.|+.. ++.+ ++.++ ..++
T Consensus 160 gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~-~~~~--------------------------------~~~~~----~~~~ 201 (394)
T PRK03699 160 EWYWVYACIGLVYVAIFILTLF-SEFPALG-KHAP--------------------------------KADKP----VAKE 201 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-cCCcccc-ccCc--------------------------------cccCc----cccc
Confidence 4999999888776665554333 2222100 0000 00000 0000
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060 267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV 346 (579)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 346 (579)
. .++.++ ...+..++.....+.+..|.|.|+++..+.+..+++.+.....++.++++++.++++||++||+.+.
T Consensus 202 ~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~ 275 (394)
T PRK03699 202 K-WGIGVL-----FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT 275 (394)
T ss_pred c-CChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence 0 112221 1112223333445667789999997765557777888888888889999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060 347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (579)
....+..+...++....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 293 (394)
T PRK03699 276 VLAGLALVLMYLFVNTDD-------------------------------------------------------------- 293 (394)
T ss_pred HHHHHHHHHHHHHHHcCC--------------------------------------------------------------
Confidence 766555554433322110
Q ss_pred cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060 427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i 506 (579)
.+...+..++. ++...+..+...+...|..|. .++...|.......+|..+
T Consensus 294 ---------------------------~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i 344 (394)
T PRK03699 294 ---------------------------PSHLLYAILGL-GFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTML 344 (394)
T ss_pred ---------------------------chHHHHHHHHH-HHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHH
Confidence 11112222222 222222334444556666654 4577888899999999999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060 507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+|.+.|.+.+..|++..+++.+++.+++.+.+..
T Consensus 345 ~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 345 TFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999888888887765433
No 34
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=100.00 E-value=9.1e-32 Score=288.47 Aligned_cols=400 Identities=20% Similarity=0.203 Sum_probs=287.7
Q ss_pred cCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh----------------------hcccccchhhHHHHHHHHHHHH
Q 008060 24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD----------------------DFKSVDRKTLLQESIVSMAVAG 81 (579)
Q Consensus 24 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~----------------------~~~~s~~~~~~~g~l~s~~~lg 81 (579)
...+.||.+...+++.....+.++..++...+.+.+ |++.+..+. |++.+.+.++
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~ 88 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ---GLILSSHFYG 88 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh---hHHHHHHHHH
Confidence 346678888999999999999999999999988876 777877777 9999999999
Q ss_pred HHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhh
Q 008060 82 AIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 159 (579)
Q Consensus 82 ~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a--~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~ 159 (579)
+.+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus 89 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 168 (465)
T TIGR00894 89 QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRL 168 (465)
T ss_pred HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999998887543 5688999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccCc-CcchhHHHHhhHHHHHHHHHHHh-ccCChhHHHhcCCHHHHHHHHHhhcCCCc
Q 008060 160 VSTNGFLITSGQFLSYLINLAFTRAP-GTWRWMLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHE 237 (579)
Q Consensus 160 ~~~~~~~~~iG~~ig~~l~~~l~~~~-~~Wr~~f~i~~i~~l~~~i~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~ 237 (579)
+++...+..+|.++++++++.+.+.. + ||+.|++.++++++..++++. .+|+|+..... +.++.+.
T Consensus 169 ~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~---------- 236 (465)
T TIGR00894 169 LGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEKKY---------- 236 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHHHH----------
Confidence 99999999999999999999998874 6 999999999888777766544 55666421111 1111100
Q ss_pred hhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 008060 238 VETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLL 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (579)
..+..+++ ..+...+..+++.++++.++...+. .++...+.+.+..|+|.|+++..+.+....++.
T Consensus 237 -------i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~ 302 (465)
T TIGR00894 237 -------INSSLQGQ--KGSTRQSLPIKAIPKSLPVWAIWFA-----IFGHFWLYTILPTYLPTFISWVLRVSGKENGLL 302 (465)
T ss_pred -------HHhhcccc--cCCCCCCCCHHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHH
Confidence 00000000 0011122357778888877654333 334445567778899999987666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhhH--------HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060 318 SLVTSGLNAAGSIVSIYFIDRTGRKKLLV--------ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY 389 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (579)
.....++.+++.+++|+++||+++|+... .+......+..++..... ..
T Consensus 303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------------- 359 (465)
T TIGR00894 303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-SA---------------------- 359 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-CC----------------------
Confidence 88889999999999999999976543211 111111111111111110 00
Q ss_pred ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060 390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS 469 (579)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (579)
..+..++.+.+...+.
T Consensus 360 ---------------------------------------------------------------~~~~~~~~~~l~~~~~- 375 (465)
T TIGR00894 360 ---------------------------------------------------------------AFYLTIIILTLANAVS- 375 (465)
T ss_pred ---------------------------------------------------------------chHHHHHHHHHHHHHh-
Confidence 0112222222222222
Q ss_pred cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHHHhhh
Q 008060 470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI---GTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
.+..+..+....|..|. .+|.++|+.++.+.++++++|.+.|.+.+.. +|...|.+.+++.+++.++..+
T Consensus 376 ~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 376 SGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 22223334455676654 8899999999999999999999999987653 3778888888888888776543
No 35
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=100.00 E-value=4.1e-31 Score=283.42 Aligned_cols=385 Identities=18% Similarity=0.083 Sum_probs=258.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060 29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL 108 (579)
Q Consensus 29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l 108 (579)
+++.+....+..+...++....++..|.+.+++|.+..+. +++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 110 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI---GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLML 110 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4455556666677777777788899999999999988888 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc----C
Q 008060 109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR----A 184 (579)
Q Consensus 109 ~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~----~ 184 (579)
++++.++.+++++++.+++.|+++|++.+... ....+++|++|+++|++++++......+|..+++.+.+.+.. .
T Consensus 111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~ 189 (476)
T PLN00028 111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA 189 (476)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988654 456688999999999999999987777777777666654421 1
Q ss_pred ----cCcchhHHHHhhHHHHHHHHHHHhccCC-hhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060 185 ----PGTWRWMLGVAGIPALLQFILMLLLPES-PRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259 (579)
Q Consensus 185 ----~~~Wr~~f~i~~i~~l~~~i~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
..+||+.|++.+++.++..+..++++++ |+ ++.++.+ ++.+.++..
T Consensus 190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~------------------------~~~~~~~~~ 240 (476)
T PLN00028 190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK------------------------KSGTMPKDS 240 (476)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH------------------------hcCcccccc
Confidence 1149999999998887776665555443 32 1000000 000000001
Q ss_pred hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT 339 (579)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 339 (579)
....+++.++++++|...+.. +..+........+.|.|+.+..+.+...++.+.....++++++++++|+++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~ 315 (476)
T PLN00028 241 FSKVLRYGVTNYRTWILALTY-----GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA 315 (476)
T ss_pred HHHHHHHHHcCchhHHHHHHH-----HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 122345567777765433221 122223344566788888766555677788888888999999999999999999
Q ss_pred CCchh----hHHHHHHHHHH-HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcc
Q 008060 340 GRKKL----LVISLSGVILS-LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFC 414 (579)
Q Consensus 340 ~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (579)
+||+. .........++ ..++..... .
T Consensus 316 ~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-~------------------------------------------------ 346 (476)
T PLN00028 316 ARRFGMRGRLWALWIVQTLGGVFCIWLGRA-N------------------------------------------------ 346 (476)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHHHHhccc-c------------------------------------------------
Confidence 86521 11111111111 111111100 0
Q ss_pred cCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhH
Q 008060 415 ASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGG 494 (579)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 494 (579)
..+..++.++++..+.... .+..+.+..++. ++.+|++.|
T Consensus 347 --------------------------------------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~g 386 (476)
T PLN00028 347 --------------------------------------SLGAAIVVMILFSIFVQAA-CGATFGIVPFVS-RRSLGVISG 386 (476)
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHHh-hhhhcccCcccC-hhhchhhhh
Confidence 0111122222222222111 223445556664 478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060 495 IAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 495 i~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
+.+..+.+|++++|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus 387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 998888888888877654 2223458889999998888887776443
No 36
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=100.00 E-value=2.5e-30 Score=269.73 Aligned_cols=380 Identities=13% Similarity=0.051 Sum_probs=280.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
+..++.+....++.++......+++++.+.+.+ +++++..+. +++.+++.+++.++.++.|++.||+|+|+++.++
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~---g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~ 106 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL---FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFS 106 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 345567888888888899999999999999876 899999988 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 008060 106 DFLFFVGAVIMAAA-----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180 (579)
Q Consensus 106 ~~l~~i~~ll~~~a-----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~ 180 (579)
.+++++.+++.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++.+.
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999986 8999999999999998 77889999999999999999999999977777777766666554
Q ss_pred hc-----cCcC------------cchhHHHHhhHHHHHHHHHHHh-ccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH
Q 008060 181 FT-----RAPG------------TWRWMLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHEVETEI 242 (579)
Q Consensus 181 l~-----~~~~------------~Wr~~f~i~~i~~l~~~i~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (579)
+. ...+ +||..+++..++.++..++.++ .++.|+
T Consensus 186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------- 237 (462)
T PRK15034 186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------------- 237 (462)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----------------------------
Confidence 33 1111 3788888887777666666444 333221
Q ss_pred HHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 008060 243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS 322 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (579)
++...++..+.+|+|..|...++. ++.+.++..+.++.|.|+++... ............
T Consensus 238 --------------~~~~~~~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~ 296 (462)
T PRK15034 238 --------------SRASIADQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGP 296 (462)
T ss_pred --------------cccCHHHHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHH
Confidence 111234567789999887644433 44455666777788999876432 222222233445
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccc
Q 008060 323 GLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMK 402 (579)
Q Consensus 323 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (579)
+...+.++++|+++||+|+++++.++++.+.++...+.........
T Consensus 297 l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~---------------------------------- 342 (462)
T PRK15034 297 FIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGS---------------------------------- 342 (462)
T ss_pred HHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccc----------------------------------
Confidence 6688899999999999999999998888777766544433221100
Q ss_pred cccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc
Q 008060 403 CLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE 482 (579)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (579)
..-+...+.+.......+++-+ ..+-++.+
T Consensus 343 -------------------------------------------------~~~~~~~~~~~~l~~~~G~gng-svfk~ip~ 372 (462)
T PRK15034 343 -------------------------------------------------GNFIAFYAVFMGLFLTAGLGSG-STFQMIAV 372 (462)
T ss_pred -------------------------------------------------cHHHHHHHHHHHHHHHhcccch-HHHHhhHH
Confidence 0112222222222233333322 33456666
Q ss_pred cccc---------------------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhh
Q 008060 483 IYPL---------------------RFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 483 ~~p~---------------------~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 540 (579)
++|+ +..|.+.|+....+.+|+++.|.++|...+..| +...|+.+.+..+++.++.|.
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6663 256899999999999999999999999998876 777899999999999888876
Q ss_pred hcc
Q 008060 541 FVP 543 (579)
Q Consensus 541 ~~~ 543 (579)
..-
T Consensus 453 ~y~ 455 (462)
T PRK15034 453 VYG 455 (462)
T ss_pred Hhc
Confidence 543
No 37
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=100.00 E-value=1.2e-30 Score=274.85 Aligned_cols=388 Identities=16% Similarity=0.116 Sum_probs=282.4
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
++..+.....+.+..++..++...+.+.+|.+.+++|.+..+. ++..+.+.+++.+++++.|+++||+|||++++++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV---PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4567777888888888889999999999999999999988887 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060 106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP 185 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~ 185 (579)
..+.+++.++..++++++.+++.|+++|++.+...+....++.|++|+++|.+++++......+|..++|.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999888889999999999999999999998888899999999999998877
Q ss_pred CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060 186 GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL 264 (579)
Q Consensus 186 ~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
+ ||+.|++.+++.++..+. ++..||+++... + + ...++...+.
T Consensus 165 ~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-------------------------------~~~~~~~~~~ 208 (406)
T PRK15402 165 P-WRGMFVLFAALAALSFFGLWRAMPETAGRVG---E-K-------------------------------LSLKELGRDY 208 (406)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---c-c-------------------------------ccHHHHHHHH
Confidence 6 999999988877766654 455676642100 0 0 0000012345
Q ss_pred HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060 265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL 344 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 344 (579)
++.+++|.++...+..... .........+.|.++.+..+.+....+.......++.+++.++.+++.||+++|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~ 283 (406)
T PRK15402 209 KLVLKNRRFVAGALALGLV-----SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL 283 (406)
T ss_pred HHHHcCcHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 6677888765543332221 11223344556777765544466666666666677788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060 345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (579)
+..+..+..++.+++.........
T Consensus 284 ~~~~~~~~~~g~~~~~~~~~~~~~-------------------------------------------------------- 307 (406)
T PRK15402 284 IRMGLWPMVAGLLLAALATVISSH-------------------------------------------------------- 307 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc--------------------------------------------------------
Confidence 888887777776666554211100
Q ss_pred cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHH
Q 008060 425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISN 504 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~ 504 (579)
..+.......++..+.+.. .+....... ..+++.+|+..++.++...++.
T Consensus 308 ----------------------------~~~~~~~~~~~~g~g~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 357 (406)
T PRK15402 308 ----------------------------AYLWLTAGLSLYAFGIGLA-NAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIF 357 (406)
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHH-hhhHHHHHh-hhccccccHHHHHHHHHHHHHH
Confidence 0112223333333333222 222222222 2345889999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 505 LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
.+++.+.+.+.+..+.....+..++..++..++...+.+
T Consensus 358 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK15402 358 TVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLK 396 (406)
T ss_pred HHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988877655444444444444444333333
No 38
>PRK10489 enterobactin exporter EntS; Provisional
Probab=100.00 E-value=8.5e-32 Score=284.62 Aligned_cols=381 Identities=17% Similarity=0.134 Sum_probs=283.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh-
Q 008060 40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA- 118 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~- 118 (579)
.+...+......+.+|.+.++++.+..+. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 102 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQV---GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN 102 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence 44455556677788898888888877666 99999999999999999999999999999999888877776665432
Q ss_pred ----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060 119 ----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV 194 (579)
Q Consensus 119 ----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i 194 (579)
.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.....++|..+|+.+++.+.+..+ |++.|++
T Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~ 181 (417)
T PRK10489 103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGL 181 (417)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHH
Confidence 56789999999999999998889889999999999999999999999999999999999999988766 9999998
Q ss_pred hhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhh
Q 008060 195 AGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR 274 (579)
Q Consensus 195 ~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (579)
.++..++..+..+.+|++++.. +.+ + +..++....++..+++|.++
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~--~~~-~-------------------------------~~~~~~~~~~~~~~~~~~~~ 227 (417)
T PRK10489 182 AAAGTFITLLPLLRLPALPPPP--QPR-E-------------------------------HPLRSLLAGFRFLLASPVVG 227 (417)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--ccc-c-------------------------------cchHHHHHHHHHHHcChHHH
Confidence 8877776666666777754210 000 0 00000112344556666655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 008060 275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL 354 (579)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 354 (579)
...+...... .......+.|.|+++..+.+....+++.....++.+++.++.+++.||.++++.+..+..+..+
T Consensus 228 ~~~~~~~~~~------~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~ 301 (417)
T PRK10489 228 GIALLGGLLT------MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFL 301 (417)
T ss_pred HHHHHHHHHH------HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHH
Confidence 4333322211 1234556778898885555667778888888899999999999999997777777777766666
Q ss_pred HHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccc
Q 008060 355 SLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVK 434 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (579)
+.+++....+
T Consensus 302 ~~~~~~~~~~---------------------------------------------------------------------- 311 (417)
T PRK10489 302 AVGLFGLMPM---------------------------------------------------------------------- 311 (417)
T ss_pred HHHHHHccch----------------------------------------------------------------------
Confidence 6554432110
Q ss_pred cccccccccccccCCCCCcchHHHHHHHHHHHhhccCc-ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060 435 DLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGM-GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513 (579)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~ 513 (579)
.+...+..++++. +.+. .+...+++.|..|++.||+++|+.++..++|..++|.+.|.
T Consensus 312 -------------------~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~ 370 (417)
T PRK10489 312 -------------------WILAVLCLALFGY--LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG 370 (417)
T ss_pred -------------------HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 1112222222222 2222 23445788899999999999999999999999999999999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHH
Q 008060 514 LTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEK 555 (579)
Q Consensus 514 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (579)
+.+..|+...+++.+++.++..++.+..++++|+++.||+|+
T Consensus 371 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 371 LGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 999999988998888887777777677788888777665543
No 39
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=100.00 E-value=9.8e-32 Score=286.73 Aligned_cols=400 Identities=14% Similarity=0.067 Sum_probs=275.6
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
..++|.++..+.+...........++..+|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||++++.+
T Consensus 14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 90 (455)
T TIGR00892 14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET---AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG 90 (455)
T ss_pred CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH---HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence 4567877777777766666666778889999999999998888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHH-HHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 106 DFLFFVGAVIMAAAPNPGALIT-GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~~~ll~-~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
.++.+++.++++++++++.+++ .|++.|++.+...+....++.++++ ++|++++++...+..+|..++|.+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~ 169 (455)
T TIGR00892 91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES 169 (455)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865 5799999999877777888899996 6799999999999999999999999999887
Q ss_pred cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060 185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL 264 (579)
Q Consensus 185 ~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.+ ||+.|++.+++.++..+..+++.+.++... +.+.++. ......... +..... ...+...+...
T Consensus 170 ~g-wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~--------~~~~~~-~~~~~~~~~~~ 234 (455)
T TIGR00892 170 FG-WRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKSK----EGLPPDGST--------KKLSKK-STAEKINRFLD 234 (455)
T ss_pred hC-hHHHHHHHHHHHHHHHHHHHHhCCCCcccc-ccccccc----ccCCCCCcc--------cccccc-chhhhhhhhcc
Confidence 77 999999999877766555444432211000 0000000 000000000 000000 00000001111
Q ss_pred HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCc
Q 008060 265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT--GRK 342 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~ 342 (579)
.+.+++|.++...+... ....+......+.|.|+++.+. +...++.+....+++.++++++.+++.||. ++|
T Consensus 235 ~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 308 (455)
T TIGR00892 235 FSLFTHRGFLVYLSGNV-----IMFLGFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH 308 (455)
T ss_pred hHHhcCchHHHHHHHHH-----HHHHHccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH
Confidence 35677777654333222 2223344556677888887655 566777888888888999999999999973 334
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060 343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF 422 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (579)
+....+......+...+......
T Consensus 309 ~~~~~~~~~~~~~l~~ll~~~~~--------------------------------------------------------- 331 (455)
T TIGR00892 309 VQYLFSFALLFNGLTHLLCALAG--------------------------------------------------------- 331 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------------------------------------------------
Confidence 33333322222222111111110
Q ss_pred CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHH
Q 008060 423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI 502 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~ 502 (579)
..+..++..++.+..+ ....+...+...|.+|++.+++++|+.+....+
T Consensus 332 ------------------------------~~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l 380 (455)
T TIGR00892 332 ------------------------------DYTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECC 380 (455)
T ss_pred ------------------------------hHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHH
Confidence 0122233333333332 223445567888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHh
Q 008060 503 SNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 503 g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~ 538 (579)
|++++|.+.|.+.+..| |...|.+.+++.+++.++.
T Consensus 381 g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 381 AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 99999999999999874 8889998888877776643
No 40
>TIGR00895 2A0115 benzoate transport.
Probab=100.00 E-value=1.2e-30 Score=273.28 Aligned_cols=386 Identities=24% Similarity=0.261 Sum_probs=273.4
Q ss_pred cCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH
Q 008060 24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL 103 (579)
Q Consensus 24 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~ 103 (579)
..++++++.+....+..+..+++....++..|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 86 (398)
T TIGR00895 10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADRIGRKRVLL 86 (398)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Confidence 344566777777777888888888889999999999999988887 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060 104 VADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183 (579)
Q Consensus 104 ~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~ 183 (579)
.+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 87 WSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcCcchhHHHHhhHHHHHHHH-HHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhh
Q 008060 184 APGTWRWMLGVAGIPALLQFI-LMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI 262 (579)
Q Consensus 184 ~~~~Wr~~f~i~~i~~l~~~i-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
..+ ||+.|++.+++.++..+ .+.++||++++...+ +.++..+..+........+.+ + ...+ +..++....
T Consensus 167 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~----~~~~--~~~~~~~~~ 237 (398)
T TIGR00895 167 VFG-WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-S----ALPE--QKATQGTKR 237 (398)
T ss_pred ccc-ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-c----cccc--cccccchhh
Confidence 777 99999998755554444 467788887655444 222222222221111000000 0 0000 000011112
Q ss_pred hHHH-hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060 263 NLVK-LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR 341 (579)
Q Consensus 263 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 341 (579)
+..+ .++.+..+...... ...+...........+.|.+.++.+. +....+.......++.+++.++.++++||++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (398)
T TIGR00895 238 SVFKALFQGKTARITVLLW--LLYFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLADRLGP 314 (398)
T ss_pred HHHHHHhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 2222 33333222222211 22223344556667778866666655 55667777788888999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060 342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL 421 (579)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (579)
|+...... +..+...++.....
T Consensus 315 ~~~~~~~~-~~~~~~~~~~~~~~--------------------------------------------------------- 336 (398)
T TIGR00895 315 RVTALLLL-LGAVFAVLVGSTLF--------------------------------------------------------- 336 (398)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhh---------------------------------------------------------
Confidence 84443333 33332222222111
Q ss_pred CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060 422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW 501 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~ 501 (579)
..+...+..++.+.+.+ +..+..+++..|.+|++.||++.|+.++...
T Consensus 337 -------------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 384 (398)
T TIGR00895 337 -------------------------------SPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGR 384 (398)
T ss_pred -------------------------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 01122333333333322 2345567889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008060 502 ISNLIVAQSFLSL 514 (579)
Q Consensus 502 ~g~~i~~~~~g~~ 514 (579)
+|.+++|.+.|.+
T Consensus 385 ~g~~~g~~~~G~l 397 (398)
T TIGR00895 385 LGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHhHHhc
Confidence 9999999999875
No 41
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=100.00 E-value=3.4e-30 Score=269.94 Aligned_cols=367 Identities=17% Similarity=0.121 Sum_probs=267.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060 29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL 108 (579)
Q Consensus 29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l 108 (579)
.|+.+..+.+..+..........+.+|.+.+++|.++.+. ++..+++.++..+++++.|+++||+|||++++.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 5555555555555555555566678899999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060 109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW 188 (579)
Q Consensus 109 ~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W 188 (579)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++.+.+..+ |
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w 173 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-W 173 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 9
Q ss_pred hhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060 189 RWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL 267 (579)
Q Consensus 189 r~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
|+.|++.++++++..+. ....||.|+.. +....+..+.
T Consensus 174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----------------------------------------~~~~~~~~~~ 212 (394)
T PRK10213 174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----------------------------------------SHQKQNTFRL 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCccc-----------------------------------------ccchhHHHHH
Confidence 99999988766655444 33456643200 0001123466
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060 268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYY-SPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV 346 (579)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 346 (579)
+++|.++...+..... +.+......+ .|.+.++.+. +....+......+++.+++.++.+++.||.+ |+.+.
T Consensus 213 l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~ 285 (394)
T PRK10213 213 LQRPGVMAGMIAIFMS-----FAGQFAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALA 285 (394)
T ss_pred hcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHH
Confidence 7777776544332111 1222333334 4677666555 5566777778788889999999999999954 44444
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060 347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (579)
.+..+..++..++....+
T Consensus 286 ~~~~~~~~~~~~l~~~~~-------------------------------------------------------------- 303 (394)
T PRK10213 286 GAPLVLAVSALVLTLWGS-------------------------------------------------------------- 303 (394)
T ss_pred HHHHHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence 444443333333322211
Q ss_pred cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060 427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i 506 (579)
..|......++.+.++... .+...+.+.+..| +.++...++.....++|..+
T Consensus 304 --------------------------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~ 355 (394)
T PRK10213 304 --------------------------DKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC 355 (394)
T ss_pred --------------------------hHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH
Confidence 0222233333333333222 2333346667676 44667778888888999999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060 507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLF 537 (579)
Q Consensus 507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (579)
||.+.|.+.|..|+...+...+++.++..++
T Consensus 356 G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 356 GAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 9999999999999888888777666555544
No 42
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=100.00 E-value=1e-30 Score=274.76 Aligned_cols=365 Identities=18% Similarity=0.149 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060 31 RLAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 31 ~~l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~ 109 (579)
+.+..+.+..+...++..+..+.+|. +.+++|.+..+. |++.+++.+++.+++++.|+++||+|||++++.+.++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA---GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH---HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 34455667777888888888889987 678899988887 99999999999999999999999999999999999988
Q ss_pred HHHHHHHHhc--------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 110 FVGAVIMAAA--------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 110 ~i~~ll~~~a--------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
+++.+.+.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 8776665443 25778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchh
Q 008060 182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK 261 (579)
Q Consensus 182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (579)
.+..+ ||+.+++.++..++..+.....|+.++ + + + ++
T Consensus 172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~------------------------------------~~ 208 (399)
T PRK05122 172 YHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP----V-K-G------------------------------------ER 208 (399)
T ss_pred HHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC----C-C-c------------------------------------cc
Confidence 88777 999988776655443333322222210 0 0 0 00
Q ss_pred hhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060 262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR 341 (579)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 341 (579)
.+..+.++. .+...... ......+.....+.|.++.+.+. + ..+.......++.+++.++.+++.||+++
T Consensus 209 ~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 278 (399)
T PRK05122 209 LPFRRVLGR--VWPYGMGL-----ALASIGFGTIATFITLYYAARGW-D--GAALALTLFGVAFVGARLLFGNLINRLGG 278 (399)
T ss_pred hhHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHccc-c--cchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 011122221 11111111 11122344455667777766554 2 23444556677788999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060 342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL 421 (579)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (579)
|+.+..+..+..++..++....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 301 (399)
T PRK05122 279 LRVAIVSLLVEILGLLLLWLAPS--------------------------------------------------------- 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------------------------------------------------
Confidence 99888877777766655543211
Q ss_pred CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060 422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW 501 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~ 501 (579)
.+..++...+.+.+++. ..+.......|..|++.||+++|+.+....
T Consensus 302 --------------------------------~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 348 (399)
T PRK05122 302 --------------------------------PWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLD 348 (399)
T ss_pred --------------------------------HHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12223333333333322 233333556688899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060 502 ISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 502 ~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
+|..++|.+.|.+.+..|++..|++.+++.+++.++.+++
T Consensus 349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888887765543
No 43
>PRK03633 putative MFS family transporter protein; Provisional
Probab=100.00 E-value=8.9e-30 Score=265.89 Aligned_cols=361 Identities=15% Similarity=0.124 Sum_probs=267.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
+..+.++.++.........+.+|.+.+++|.+..+. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV---GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667778888999999999999999999988887 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHH
Q 008060 113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML 192 (579)
Q Consensus 113 ~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f 192 (579)
.+++++++|++.+++.|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+... |+..+
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~ 163 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW 163 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence 99999999999999999999999999888888888899999999999999999999999999999999876532 33332
Q ss_pred HHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060 193 GVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (579)
Q Consensus 193 ~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
..+...... +...+.+..++ +. ++ .+..+..+.+++|.
T Consensus 164 -~~~~~~~~~-~~~~~~~~~~~----~~----------------------------------~~--~~~~~~~~~~~~~~ 201 (381)
T PRK03633 164 -VTGLVLAAI-LPLLFTRILNQ----QA----------------------------------EN--HDSTSIWPMLKLRQ 201 (381)
T ss_pred -HHHHHHHHH-HHHHHhcccCC----CC----------------------------------CC--CCCCCHHHHHHhcc
Confidence 222222111 11222121110 00 00 00123455677776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV 352 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 352 (579)
++...... +...........+.|.|+++.+. +....+.......++.+++.+..|++.||+++|+.+..+....
T Consensus 202 ~~~~~~~~-----~~~~~~~~~~~~~lp~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~ 275 (381)
T PRK03633 202 ARLGVNGC-----IISGIVLGSLYGLMPLYLNHQGM-SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVV 275 (381)
T ss_pred hHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHH
Confidence 65322211 11122334455678999887655 4556667777788889999999999999999999888777776
Q ss_pred HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060 353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (579)
.++.+.+.. .
T Consensus 276 ~~~~~~~~~--~-------------------------------------------------------------------- 285 (381)
T PRK03633 276 ILGSIAMLS--Q-------------------------------------------------------------------- 285 (381)
T ss_pred HHHHHHHhh--h--------------------------------------------------------------------
Confidence 665544321 0
Q ss_pred cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 008060 433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFL 512 (579)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g 512 (579)
+.......+++. ......|...+...|..|++.++...+..+...++|.+++|.+.|
T Consensus 286 ----------------------~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G 342 (381)
T PRK03633 286 ----------------------AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTA 342 (381)
T ss_pred ----------------------HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111122221 122334555677788888888888888888889999999999999
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHh
Q 008060 513 SLTQAIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 513 ~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
.+.|+.|+.+.|.+.+++.++..+..
T Consensus 343 ~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 343 MLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887665543
No 44
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-30 Score=282.43 Aligned_cols=429 Identities=23% Similarity=0.317 Sum_probs=302.8
Q ss_pred hhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccch
Q 008060 20 FSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR 99 (579)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr 99 (579)
.+.++..+.++......+.............++..+ ++.-+.+.....+..+++++|.++|++++|+++||+|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk 148 (521)
T KOG0255|consen 74 NPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE-----WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK 148 (521)
T ss_pred CccccccccccccccccccceeEecCCCCcccccch-----hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH
Confidence 344455555555444444443333333333333333 444444444459999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHH
Q 008060 100 TSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179 (579)
Q Consensus 100 ~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~ 179 (579)
++++.++++..++.++.++++|++.+++.|++.|++.++.......+++|++++++|+.+..+ ......+..+++.+++
T Consensus 149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a 227 (521)
T KOG0255|consen 149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA 227 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 7777777777888887
Q ss_pred HhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH-HHhhhh-hhhhHHhhc
Q 008060 180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEI-RDLKES-VDKEIEEEG 257 (579)
Q Consensus 180 ~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~ 257 (579)
++.. +||+.+++..+++++.++.+++.||+|||+..+++.+++.+.++++.+.+...... ...... .........
T Consensus 228 ~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~ 304 (521)
T KOG0255|consen 228 YITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF 304 (521)
T ss_pred HHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc
Confidence 7776 59999999999999888887777899999999999999999988876543111111 111111 111111122
Q ss_pred cchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 258 SSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS-PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336 (579)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 336 (579)
..++..+.++++.++.++.++...+.++. ....++. +......+. +. .+.....+.....+....+...
T Consensus 305 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~------~~~~y~gl~~~~~~lg~-~~---~~~~~~~~~~~~p~~~~~~~~~ 374 (521)
T KOG0255|consen 305 TEPKISFLDLFRTPRLRYRTLYLLFIWFV------FSLVYYGLSLNVSGLGG-NI---YLNFTLSGLVELPAYFRNGLLL 374 (521)
T ss_pred cCCCCchhhhhcCHHHHHHHHHHHHHHHH------HhHHHHhhhhhhhhcCc-hH---HHHHHHHHHHHhhHHHHHHHHH
Confidence 22335688999998877666655544421 1222222 222222222 22 2333334446788888889999
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccC
Q 008060 337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS 416 (579)
Q Consensus 337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (579)
|+.|||.....+..+..++++..........
T Consensus 375 ~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 405 (521)
T KOG0255|consen 375 PEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG------------------------------------------------- 405 (521)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhccch-------------------------------------------------
Confidence 9999999999999998888888877644211
Q ss_pred CCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH
Q 008060 417 HSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA 496 (579)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~ 496 (579)
.+...+...+..++.+.+.. ..+.+.+|++|+..|+.+.+..
T Consensus 406 -------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~ 447 (521)
T KOG0255|consen 406 -------------------------------------GWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAI 447 (521)
T ss_pred -------------------------------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHH
Confidence 01222222222223333333 3378999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHH
Q 008060 497 ATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEK 555 (579)
Q Consensus 497 ~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (579)
...+.++++++|.+...... ......+.+++....+.+++..+++|||+++++.+...
T Consensus 448 ~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~ 505 (521)
T KOG0255|consen 448 SAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLL 505 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHH
Confidence 99999999999977755444 44444444467777777777778899999998755443
No 45
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=100.00 E-value=1.5e-30 Score=280.52 Aligned_cols=391 Identities=16% Similarity=0.135 Sum_probs=283.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH
Q 008060 31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF 110 (579)
Q Consensus 31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~ 110 (579)
+.+..++++.+...++....++.+|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||++++.+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 78 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV---QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFT 78 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh---hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH
Confidence 35667778888999999999999999999999988888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060 111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW 190 (579)
Q Consensus 111 i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~ 190 (579)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.+..+ ||+
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~ 157 (485)
T TIGR00711 79 LGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRW 157 (485)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-cee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877 999
Q ss_pred HHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHH------------HhhcCCCchhh-hHHHh-h----hhhhh
Q 008060 191 MLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAIL------------RKVYPAHEVET-EIRDL-K----ESVDK 251 (579)
Q Consensus 191 ~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~-~----~~~~~ 251 (579)
.|++.+.++++..++ .+++||+++. .+.+.+...... .+.......+. ..... . .....
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (485)
T TIGR00711 158 IFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAF 235 (485)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 999988777666655 4556665331 111111111100 00000000000 00000 0 00000
Q ss_pred hHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 008060 252 EIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (579)
...+.+++++....+++++|.++...+.... .....+...++.|.|+++..+.+..++++...+..++.+++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 310 (485)
T TIGR00711 236 VVWELTDDNPLVDLRLFKYRNFTIGCVYMSL-----LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPI 310 (485)
T ss_pred HHHHHcCCCCccCHHHHcCCChHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111122223467788777655433322 23345566678899998876667888888888899999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCC
Q 008060 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDC 411 (579)
Q Consensus 332 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (579)
.|++.||++||+.+..+..+..++..++.......
T Consensus 311 ~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------------------------------------- 345 (485)
T TIGR00711 311 AGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD--------------------------------------------- 345 (485)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC---------------------------------------------
Confidence 99999999999998888877777766555221100
Q ss_pred CcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchh
Q 008060 412 GFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV 491 (579)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 491 (579)
...+.......+.+.+.+... +.......+..|++.+|+
T Consensus 346 ----------------------------------------~~~~~~~~~~~l~g~g~~~~~-~~~~~~~~~~~~~~~~g~ 384 (485)
T TIGR00711 346 ----------------------------------------TPFLAIALPQFIRGFGMGCFF-MPLTTIALSGLPPHKIAR 384 (485)
T ss_pred ----------------------------------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCHHHHhH
Confidence 001122222223332222222 222345557789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060 492 CGGIAATANWISNLIVAQSFLSLTQAI 518 (579)
Q Consensus 492 ~~gi~~~~~~~g~~i~~~~~g~~~~~~ 518 (579)
+.|+.++...+|+.+++.+.+.+.++.
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753
No 46
>PRK12382 putative transporter; Provisional
Probab=100.00 E-value=7.5e-30 Score=267.50 Aligned_cols=364 Identities=17% Similarity=0.144 Sum_probs=259.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
+..+.++.+...+......|.+|. +.+++|.+..+. |++.+++.+++.++++++|+++||+|||++++.+.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~---g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV---GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL 93 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence 333444556666677777888886 678999988888 9999999999999999999999999999999999887776
Q ss_pred HHHHHH---h-----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060 112 GAVIMA---A-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183 (579)
Q Consensus 112 ~~ll~~---~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~ 183 (579)
+.+... . .++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~ 173 (392)
T PRK12382 94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS 173 (392)
T ss_pred HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 654332 2 35789999999999999998889888999999999999999999999999999999999999988
Q ss_pred CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060 184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263 (579)
Q Consensus 184 ~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
..+ ||+.+.+..+..++........||.++ ++ ++ +.+
T Consensus 174 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------------------------~~----~~~ 210 (392)
T PRK12382 174 HFG-FAALALTTMVLPLLAWAFNGTVRKVPA----HA----------------------------------GE----RPS 210 (392)
T ss_pred ccC-hHHHHHHHHHHHHHHHHHHHhccCCCC----Cc----------------------------------cc----Cch
Confidence 776 998877655443332222222232211 00 00 001
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK 343 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 343 (579)
.++.++ .++...+.. +....+......+.|.++++.+... .+.......++.+++.++.|++.||+++|+
T Consensus 211 ~~~~~~--~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 280 (392)
T PRK12382 211 LWSVVG--LIWKPGLGL-----ALQGVGFAVIGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK 280 (392)
T ss_pred HHHHHH--HHHHhHHHH-----HHHHHHHhHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 111111 111111111 1112234455567778877765432 344455566777889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060 344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (579)
.+..+..+..++.+++....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 301 (392)
T PRK12382 281 VAIVSLLVETVGLLLLWLAPT----------------------------------------------------------- 301 (392)
T ss_pred ehHHHHHHHHHHHHHHHHccc-----------------------------------------------------------
Confidence 988888777777665443210
Q ss_pred ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060 424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS 503 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g 503 (579)
.+...+...+...+.+. ..+...+...|.+|++.||++.|+.++...+|
T Consensus 302 ------------------------------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 350 (392)
T PRK12382 302 ------------------------------AWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIA 350 (392)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 12223333333332222 23444466778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060 504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV 542 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (579)
+.++|.+.|.+.+..||+..|.+.+++.+++.++.++..
T Consensus 351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998888877765443
No 47
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=100.00 E-value=4.3e-31 Score=274.46 Aligned_cols=375 Identities=16% Similarity=0.130 Sum_probs=265.2
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060 39 GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA 118 (579)
Q Consensus 39 ~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~ 118 (579)
.++..++++..++...|.+.+++|.+..+. +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL---GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH---HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999998888 99999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH-HHHHHhccCcCcchhHHHHhhH
Q 008060 119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY-LINLAFTRAPGTWRWMLGVAGI 197 (579)
Q Consensus 119 a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~-~l~~~l~~~~~~Wr~~f~i~~i 197 (579)
+++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+..+ ||+.|++.++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 158 (379)
T TIGR00881 80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGI 158 (379)
T ss_pred hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 56666666665 9999998887
Q ss_pred HHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhH
Q 008060 198 PALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG 276 (579)
Q Consensus 198 ~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (579)
+.++..+. +++.||+|+....+...++ .+++ .+..+++.+++.+..+...++++++|.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (379)
T TIGR00881 159 IAIIVSLICFLLLRDSPQSCGLPPAEEM-------------PNEE----PDGDAEKKEEELTKKQIFLQYVLLNKVLWYI 221 (379)
T ss_pred HHHHHHHHHheeeCCCccccccCccccC-------------cccc----cccccccccccccchHHHHHHHHhcchHHHH
Confidence 76665544 5556776542111000000 0000 0000000001111122345567777776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHH
Q 008060 277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSL 356 (579)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 356 (579)
.+... ...........+.|.++++..+.+....+.......++.+++.++.+++.||..+|+.............
T Consensus 222 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 222 SLGYV-----FVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 33322 2233445667788888877655567777888888889999999999999998643332222222211111
Q ss_pred HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccc
Q 008060 357 GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDL 436 (579)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (579)
..+........
T Consensus 297 ~~~~~~~~~~~--------------------------------------------------------------------- 307 (379)
T TIGR00881 297 VSLLVYWLNPA--------------------------------------------------------------------- 307 (379)
T ss_pred HHHHHHhcCcc---------------------------------------------------------------------
Confidence 11111111000
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 437 CHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ 516 (579)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~ 516 (579)
...+. .....+..+.+..+..+....+..|.+|++.||++.|+.+....+|+.++|.+.|.+.|
T Consensus 308 ---------------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 308 ---------------ANPLM-DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred ---------------hhHHH-HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 00111 22222222222333334445678899999999999999999999999999999999999
Q ss_pred hcccchhh
Q 008060 517 AIGTSWTF 524 (579)
Q Consensus 517 ~~g~~~~~ 524 (579)
..||+..|
T Consensus 372 ~~g~~~~f 379 (379)
T TIGR00881 372 GFGWAGAF 379 (379)
T ss_pred hhcccccC
Confidence 99987654
No 48
>PRK10504 putative transporter; Provisional
Probab=99.98 E-value=1.1e-29 Score=272.86 Aligned_cols=391 Identities=17% Similarity=0.175 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
.+..++++.++..++...+++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM---HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3455667788888899999999999999999988888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
+.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.+..+ ||+.
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~ 166 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWI 166 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877 9999
Q ss_pred HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHh---------hcCCCc---hhhhHHHh-----hhhhhhhH
Q 008060 192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRK---------VYPAHE---VETEIRDL-----KESVDKEI 253 (579)
Q Consensus 192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~-----~~~~~~~~ 253 (579)
|++.....++..+. ....|+.+. .+.+.+........ ...... ........ ........
T Consensus 167 f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
T PRK10504 167 FLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL 243 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99988766665555 344454431 11111111110000 000000 00000000 00000000
Q ss_pred HhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008060 254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI 333 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (579)
+++...++....+++|+|.++...+..++. ..+.....++.|.|++...+.+....++...+..++.+++.++.+
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (471)
T PRK10504 244 HARNNNRALFSLKLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV 318 (471)
T ss_pred HHhcCCCCccCHHHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111122234578888876544333322 223455666788888875555777788888888888888889999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCc
Q 008060 334 YFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGF 413 (579)
Q Consensus 334 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (579)
++.||++||+++..+..+..+...++......
T Consensus 319 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 350 (471)
T PRK10504 319 QVVNRFGYRRVLVATTLGLALVSLLFMLVALL------------------------------------------------ 350 (471)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHhcccc------------------------------------------------
Confidence 99999999999888887777665555432110
Q ss_pred ccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhh
Q 008060 414 CASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCG 493 (579)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 493 (579)
+..+.......+.+.+.+.. .+.......+.+|++.+|.++
T Consensus 351 --------------------------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 391 (471)
T PRK10504 351 --------------------------------------GWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASSGN 391 (471)
T ss_pred --------------------------------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccchH
Confidence 00111112222222222222 233446777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008060 494 GIAATANWISNLIVAQSFLSLTQAIGTS 521 (579)
Q Consensus 494 gi~~~~~~~g~~i~~~~~g~~~~~~g~~ 521 (579)
|+.++...+|..+++.+.|.+.+..|+.
T Consensus 392 ~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 392 SLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998877653
No 49
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.98 E-value=7.4e-30 Score=266.45 Aligned_cols=284 Identities=18% Similarity=0.175 Sum_probs=226.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
..+.+..+..........+..|.+.+++|.++.+. +++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 84 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV---QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS 84 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence 33444456667788888999999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060 114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG 193 (579)
Q Consensus 114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~ 193 (579)
++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~ 163 (385)
T TIGR00710 85 LGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFA 163 (385)
T ss_pred HHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988776 999999
Q ss_pred HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060 194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (579)
Q Consensus 194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
+.+++.++..+. ++..||+++.. +. ++.+......++.++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------------------------~~~~~~~~~~~~~~~~~~ 207 (385)
T TIGR00710 164 FLSLAGILLSALIFFILPETLPYE----AR--------------------------------IQISTYFETFLLLLKSKM 207 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCc----cc--------------------------------CCHHHHHHHHHHHHcCch
Confidence 988777666555 45566653210 00 000001234556677777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV 352 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 352 (579)
++...+.... ..........+.|.++++..+.+....+.+.....++.+++.++.+++.||+++|+.+..+..+.
T Consensus 208 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 282 (385)
T TIGR00710 208 FWGYALIYGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF 282 (385)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7654433222 22234455667788887655556777888888888889999999999999999999988887777
Q ss_pred HHHHHHHHHH
Q 008060 353 ILSLGVLSAV 362 (579)
Q Consensus 353 ~~~~~~~~~~ 362 (579)
.++..++...
T Consensus 283 ~~~~~~~~~~ 292 (385)
T TIGR00710 283 AVSAVLLEIT 292 (385)
T ss_pred HHHHHHHHHH
Confidence 7766655543
No 50
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.97 E-value=5.3e-29 Score=262.32 Aligned_cols=375 Identities=16% Similarity=0.073 Sum_probs=272.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhcccccchh--hHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~--~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
.++++.++..+......+.+|.+.+++|.+..+. .+.|++.+++.++..++++++|+++||+|||++++.+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 3445566677777888899999999999886553 24588999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHH
Q 008060 113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML 192 (579)
Q Consensus 113 ~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f 192 (579)
.++..++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~ 175 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVF 175 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Confidence 9999999999999999999999865 567777889999999999999999999999999999999999988776 99999
Q ss_pred HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
++.+++.++..+. ++++||.++.. +.++ ..+..+..+.++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------------------~~~~~~~~~~~~~~ 218 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQPV----SKKE---------------------------------MLHMREVVTSLKNP 218 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccc----cchh---------------------------------hhHHHHHHHhCcCC
Confidence 9988877666555 45556543200 0000 00011223445555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHH
Q 008060 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR---TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVIS 348 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 348 (579)
+.+...+..... ..........+.|.|..+.+..... ..+.+.....++.+++.+..|+++||++||+.+..+
T Consensus 219 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~ 294 (408)
T PRK09874 219 KLVLSLFVTTLI----IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITA 294 (408)
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 554322221111 1122334445567776665443222 234455556677788889999999999999998887
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060 349 LSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI 428 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (579)
.....++.+.+....+
T Consensus 295 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 310 (408)
T PRK09874 295 LIFSVLLLIPMSFVQT---------------------------------------------------------------- 310 (408)
T ss_pred HHHHHHHHHHHHHhcc----------------------------------------------------------------
Confidence 7766655544332211
Q ss_pred cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060 429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~ 508 (579)
.+...+...+.+.+.+ ...+...+...+..|++.+|+.+|+.+....+|..++|
T Consensus 311 -------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp 364 (408)
T PRK09874 311 -------------------------PLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP 364 (408)
T ss_pred -------------------------HHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence 1222222222222222 22344445667788889999999999999999999999
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060 509 QSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV 542 (579)
Q Consensus 509 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (579)
.+.|.+.+..|++..|.+.+++.+++.++.++..
T Consensus 365 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 365 LMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887765543
No 51
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.97 E-value=1.2e-29 Score=262.36 Aligned_cols=354 Identities=11% Similarity=0.001 Sum_probs=265.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI 115 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll 115 (579)
+.++.++..+......+.+|.+..+++.+..+. +++.+++.++..++++++|+++||+|||++++.+.++.+++.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL---SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 345566777778888888899999998887777 99999999999999999999999999999999999999888888
Q ss_pred HHhcc-----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060 116 MAAAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW 190 (579)
Q Consensus 116 ~~~a~-----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~ 190 (579)
.++.. +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ ||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~ 159 (365)
T TIGR00900 81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKW 159 (365)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence 88877 999999999999999999999999999999999999999999999999999999999999988776 999
Q ss_pred HHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhh
Q 008060 191 MLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLL 268 (579)
Q Consensus 191 ~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (579)
.|++.++..++..+..+.+ ||.++ +.+.+. + + +..++.....++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------~-----------~---~~~~~~~~~~~~~~ 207 (365)
T TIGR00900 160 AIWVDAVGFAISALLIVSVRIPELAA----SEIQAL--------------S-----------N---AVLRDTREGIKFVL 207 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCC----cccccc--------------c-----------h---hHHHHHHhHHHHHH
Confidence 9998887666655544433 22211 000000 0 0 00000122345667
Q ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060 269 KTRTVRRGLIAGVGLQVFQQFVGINTVM-YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI 347 (579)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 347 (579)
|+|.++...+....... ...... .+.|.+.++..+.+....+.......++.+++.++.+++.||.+||+.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (365)
T TIGR00900 208 KNPLLRTLLLLALLFNL-----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTG 282 (365)
T ss_pred cCcHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 77777654443322221 222233 677888877545566777888888888899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccc
Q 008060 348 SLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACL 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (579)
+..+..++...+....+
T Consensus 283 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 299 (365)
T TIGR00900 283 AIFVIGLAILVVGLTPP--------------------------------------------------------------- 299 (365)
T ss_pred HHHHHHHHHHHHHhhch---------------------------------------------------------------
Confidence 76666665554443211
Q ss_pred ccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHH
Q 008060 428 ISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIV 507 (579)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~ 507 (579)
..+...+..++...+.+ ...+...++..|..|++.||++.|+.++..+++..++
T Consensus 300 -------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 353 (365)
T TIGR00900 300 -------------------------NFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG 353 (365)
T ss_pred -------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222333333333322 2345566888999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 008060 508 AQSFLSLTQAIG 519 (579)
Q Consensus 508 ~~~~g~~~~~~g 519 (579)
|.+.|.+.|..|
T Consensus 354 ~~~~g~l~~~~g 365 (365)
T TIGR00900 354 LILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHcC
Confidence 999999998754
No 52
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.7e-29 Score=249.01 Aligned_cols=387 Identities=16% Similarity=0.167 Sum_probs=308.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
++.+.+.+....+...+..+..++++++.+.|.+++++|.+|. +++.++..+...+..++.|.+.||+|.|++..++
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~---~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s 85 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK---GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS 85 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH---HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH
Confidence 3455667777778888888899999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchh---hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 106 DFLFFVGAVIMAAAPNP---GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~---~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
.++..+-.+..+++.+. +++++.+++.|++.+ .+.....+++.|||++++|.++|++. ..++|..+..++++.+.
T Consensus 86 ~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 86 MLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 99999999999987654 499999999999754 78888999999999999999999999 99999999999998887
Q ss_pred cCcCc--chhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060 183 RAPGT--WRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259 (579)
Q Consensus 183 ~~~~~--Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
...+. ||..-.+.....++..+. ++.+.+.|.... ..++.
T Consensus 164 ~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~-------------------------------------~~~~~ 206 (417)
T COG2223 164 VAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRA-------------------------------------SVKPQ 206 (417)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc-------------------------------------ccccc
Confidence 76653 999888888777776655 666666653100 00000
Q ss_pred hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT 339 (579)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 339 (579)
.+..++.++++++.|...+ .++..|.++..+..++|.|+++....+...++.........+.+.++++|+++||+
T Consensus 207 ~~~~~~~v~~~~~~W~lsl-----lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~ 281 (417)
T COG2223 207 LPAQLKAVFSNKDTWLLSL-----LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI 281 (417)
T ss_pred chhHHHHHhcCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc
Confidence 1145666777888876444 34455667788888999999988888888888888888888999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCC
Q 008060 340 GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419 (579)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (579)
|.+|++...+..++++...+........+.
T Consensus 282 Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~-------------------------------------------------- 311 (417)
T COG2223 282 GGRRVTLAVFVGMALAAALLSLFLTGFGHG-------------------------------------------------- 311 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHccccccccC--------------------------------------------------
Confidence 999999999998888888777654322110
Q ss_pred CCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHH
Q 008060 420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA 499 (579)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~ 499 (579)
...+..+........+.+.|- ...+-++..++|. +.|.+.|+....
T Consensus 312 --------------------------------~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~~-~~G~v~G~vga~ 357 (417)
T COG2223 312 --------------------------------GSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFPK-ETGAVTGIVGAI 357 (417)
T ss_pred --------------------------------cchHHHHHHHHHHHHHhccCc-chheeechHHHHh-hhhHHHHHHHHh
Confidence 012222332333333334443 3445778888865 569999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhcc
Q 008060 500 NWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 500 ~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
+.+|++.-|..+|...+.+| +...|+++..+.+++.++.+....
T Consensus 358 G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 358 GGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred ccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 888999999999999888766543
No 53
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.97 E-value=7.2e-29 Score=260.07 Aligned_cols=283 Identities=16% Similarity=0.170 Sum_probs=219.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
....+..+..........+.+|.+.+++|.+..+. ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL---HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 34444555566666677788999999999988877 999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060 114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG 193 (579)
Q Consensus 114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~ 193 (579)
+++.++++++.+++.|+++|++.+...+....++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~ 161 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFY 161 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877766 999999
Q ss_pred HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060 194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (579)
Q Consensus 194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
+.+++.++..+. .+.+||+++. +.+ ++.......++.++++.
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~---~~~----------------------------------~~~~~~~~~~~~~~~~~ 204 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETRPA---RAP----------------------------------AASSKPRENSESLLNRF 204 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCc---ccC----------------------------------CccchHHHHHHHHhCHH
Confidence 988777666555 5566776320 000 00001122345566666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV 352 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 352 (579)
++...+..... .........+.|.++++..+.+....+.......++.+++.++.+++.||++||+.+..+..+.
T Consensus 205 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~ 279 (392)
T PRK10473 205 FLSRLVITTLS-----VTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF 279 (392)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55443332221 1122334455677776554446666777777888889999999999999999999988888777
Q ss_pred HHHHHHHHHH
Q 008060 353 ILSLGVLSAV 362 (579)
Q Consensus 353 ~~~~~~~~~~ 362 (579)
.++.+++...
T Consensus 280 ~~~~~~~~~~ 289 (392)
T PRK10473 280 LAAGITLALS 289 (392)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 54
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.97 E-value=7.1e-29 Score=258.14 Aligned_cols=363 Identities=16% Similarity=0.134 Sum_probs=261.2
Q ss_pred HHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH-HHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV-ADFLFFVGAVI 115 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~-~~~l~~i~~ll 115 (579)
+..+..++......+.+|. +.+++|.+..+. |++.+.+.+...+.+++.|+++||+||||.++. +..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI---GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 3456677777788888886 578899988888 999999999999999999999999999887654 56666777788
Q ss_pred HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhh--hhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060 116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL--VSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG 193 (579)
Q Consensus 116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~--~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~ 193 (579)
++++++++.+++.|+++|.+.+...|...++..|+.|+++|+++ .+....+.++|.++++.+++.+.+..+ ||+.|+
T Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~ 159 (375)
T TIGR00899 81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFL 159 (375)
T ss_pred HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHH
Confidence 89999999999999999988888888888889999887777654 577888889999999999999988777 999999
Q ss_pred HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060 194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (579)
Q Consensus 194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
+.+++.++..+. ++++||.|++...+ + ...+.++.++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~----~~~~~~~~~~~~~ 200 (375)
T TIGR00899 160 TAALAFVLCGVLVWLFLPSYPRGAPGA-----------------------------------L----TRLEVRGLLASRD 200 (375)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCcccc-----------------------------------c----CcchhhhhhcCcc
Confidence 998877666655 45578875311000 0 0011223455555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV 352 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 352 (579)
++...+..... +........+.|.++++..+.+....+.......+..+++.++.|++.||++||+.+..+..+.
T Consensus 201 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 275 (375)
T TIGR00899 201 TRLLFVACTLM-----WGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAG 275 (375)
T ss_pred hHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHH
Confidence 54333222211 1123334456677876554546666676666666667888899999999999999887766554
Q ss_pred HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060 353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (579)
.+....+....+
T Consensus 276 ~~~~~~~~~~~~-------------------------------------------------------------------- 287 (375)
T TIGR00899 276 VAFYTGLAADNS-------------------------------------------------------------------- 287 (375)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 444333322111
Q ss_pred cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 008060 433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFL 512 (579)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g 512 (579)
.|.......+...+.+. ..+....+..|..|++ +++++|+.+...++|..++|.+.|
T Consensus 288 ---------------------~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g 344 (375)
T TIGR00899 288 ---------------------LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGG 344 (375)
T ss_pred ---------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222221 2344456777888764 579999999999999999999999
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHhh
Q 008060 513 SLTQAIGTSWTFLIFGVISVAALLFVL 539 (579)
Q Consensus 513 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 539 (579)
.+.+..|++..|++.+++.+++.++..
T Consensus 345 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 345 ILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888877653
No 55
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.97 E-value=1.3e-28 Score=259.37 Aligned_cols=281 Identities=14% Similarity=0.191 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
....+.+..+...+......+.+|.+.++++.+.... ++..+++.++++++++++|+++||+|||++++.+.+++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA---PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 3344455566677888999999999999999988888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
+.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+||++++.+.+..+ ||+.
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~ 172 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVL 172 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHH
Confidence 999999999999999999999999987777778889999999999999999999999999999999999887776 9999
Q ss_pred HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060 192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT 270 (579)
Q Consensus 192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (579)
|++.+++.++..+. ++.+||+++. +++. ...+....++++++|+
T Consensus 173 f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~--------------------------------~~~~~~~~~~~~ll~~ 217 (413)
T PRK15403 173 FAIIAVMGLIAFVGLLLAMPETVKR---GAVP--------------------------------FSAKSVLRDFRNVFRN 217 (413)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc---cCCC--------------------------------CChHHHHHHHHHHHcC
Confidence 99999887776655 4567887430 0000 0000012356677888
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060 271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS 350 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 350 (579)
|.++...+.... .+........+.|.++++..+.+....++......++.+++..+.+++.++..+++.......
T Consensus 218 ~~~~~~~l~~~~-----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 292 (413)
T PRK15403 218 RLFLTGAATLSL-----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP 292 (413)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 888764443222 233445566678999988766677777888777777788888888887755544444333333
Q ss_pred HHHHHH
Q 008060 351 GVILSL 356 (579)
Q Consensus 351 ~~~~~~ 356 (579)
+..++.
T Consensus 293 ~~~ig~ 298 (413)
T PRK15403 293 IQLVGL 298 (413)
T ss_pred HHHHHH
Confidence 333333
No 56
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.97 E-value=2.1e-28 Score=257.32 Aligned_cols=374 Identities=15% Similarity=0.060 Sum_probs=256.6
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH
Q 008060 37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM 116 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~ 116 (579)
.++.++.........+.++.+.+++|.+..+. +++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~ 95 (402)
T TIGR00897 19 YIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS---ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF 95 (402)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455666778899988888 999999999999999999999999999999999999998887655
Q ss_pred H---h-cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHH-HHHHHHHHHhccCcCcchhH
Q 008060 117 A---A-APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ-FLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 117 ~---~-a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~-~ig~~l~~~l~~~~~~Wr~~ 191 (579)
. + .++++.+++.|++.|++.+...+.....+.+++|+++|++++|+..++.++|. .+++.+++++.+..+ |+..
T Consensus 96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~ 174 (402)
T TIGR00897 96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNT 174 (402)
T ss_pred HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHH
Confidence 3 3 35788999999999999988888888889999999999999999999999997 589999998887766 7766
Q ss_pred HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060 192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT 270 (579)
Q Consensus 192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (579)
++......++..++ .++.++.++.. +.+ + +++.++.....++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~------------------------------~~~~~~~~~~~~~~~~~ 221 (402)
T TIGR00897 175 LWSALAFVLTGGVIALFSNKDIFTPQ--HMQ-T------------------------------REKFSELGKAATILFTN 221 (402)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcc--ccc-C------------------------------CcchhhHHHHHHHHHcC
Confidence 55544433333333 33344332100 000 0 00000011234567788
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHH
Q 008060 271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV-ISL 349 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~ 349 (579)
|.++...+.. +++....+...++.|.|+++.+. +....+.+.....++.+++.++.|+++||++||+.+. .+.
T Consensus 222 ~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~ 295 (402)
T TIGR00897 222 PNVLLGGMVR-----IINTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGG 295 (402)
T ss_pred hhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 7775433322 22334556677889999987655 5555667777778889999999999999999888764 233
Q ss_pred HHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccccc
Q 008060 350 SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLIS 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (579)
....++...+........+
T Consensus 296 l~~~~~~~~l~~~~~~~~~------------------------------------------------------------- 314 (402)
T TIGR00897 296 VGCGIFTLALYYIPQHFGH------------------------------------------------------------- 314 (402)
T ss_pred HHHHHHHHHHHHHHHccCC-------------------------------------------------------------
Confidence 3333332222221110000
Q ss_pred CcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHH
Q 008060 430 NSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQ 509 (579)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~ 509 (579)
..+...+..++.+.+.+ +..+. .....|.. ++.||+++|+.+....+++.++|.
T Consensus 315 -----------------------~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~ 368 (402)
T TIGR00897 315 -----------------------SFAVALIIAIALGIFLA-GYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPA 368 (402)
T ss_pred -----------------------cHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 01122222223332222 22333 34456664 468999999999999999999999
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060 510 SFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 510 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+.|.+.+..|+...+++.+++.+++.+...+
T Consensus 369 i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 369 IAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888887776544
No 57
>PRK10133 L-fucose transporter; Provisional
Probab=99.97 E-value=2e-28 Score=259.61 Aligned_cols=376 Identities=13% Similarity=0.081 Sum_probs=267.3
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
++.....+..+.+..+..++.....++..|.+++++|.++.+. |++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~---gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g 97 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3445556667777788889999999999999999999998888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 106 DFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 106 ~~l~~i~~ll~---~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
+++++++.+++ .++++++.+++.|+++|+|.+...+....++.|+.|+++|.+.+++.+..+.+|..+++.+++.+.
T Consensus 98 ~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 568999999999999999999999999999999887777777899999999999999999987654
Q ss_pred c-C-----------------c-------CcchhHHHHhhHH-HHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCC
Q 008060 183 R-A-----------------P-------GTWRWMLGVAGIP-ALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPA 235 (579)
Q Consensus 183 ~-~-----------------~-------~~Wr~~f~i~~i~-~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~ 235 (579)
. . . .+||+.|+....+ .++..+. ...+||.+. +++
T Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~-------------- 239 (438)
T PRK10133 178 LSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH-------------- 239 (438)
T ss_pred hcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc--------------
Confidence 1 0 0 1366666544433 2222222 222343211 000
Q ss_pred CchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhHH
Q 008060 236 HEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIV-QLSGFASNRTA 314 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 314 (579)
.+++......+.++++++|.++...+..++ ..........|.+.|+ ++..+.+...+
T Consensus 240 -----------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~g~s~~~a 297 (438)
T PRK10133 240 -----------------SDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFA 297 (438)
T ss_pred -----------------ccccccchhhhHHHHHhCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCCCCHHHH
Confidence 000001112345677888887654433222 2233444555667774 55556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccc
Q 008060 315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT 394 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (579)
++......++.++|+++.+++.||+++|+++..+..+.++++++.... .
T Consensus 298 g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-~------------------------------ 346 (438)
T PRK10133 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-G------------------------------ 346 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-C------------------------------
Confidence 888899999999999999999999999999887766665554433321 1
Q ss_pred cccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc
Q 008060 395 ADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT 474 (579)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (579)
+...+..+.+.+.+. ..+.|
T Consensus 347 -----------------------------------------------------------~~~~~~~~~l~glg~-~~i~P 366 (438)
T PRK10133 347 -----------------------------------------------------------GHVGLIALTLCSAFM-SIQYP 366 (438)
T ss_pred -----------------------------------------------------------ChHHHHHHHHHHHHH-HHHHH
Confidence 001122233333332 23456
Q ss_pred ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHH
Q 008060 475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLF 537 (579)
Q Consensus 475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~ 537 (579)
..++...+..|+ ..+++.++..+ ..+|+.++|.+.|.+.|..| .+..|++..+..+....+
T Consensus 367 ~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 367 TIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 666777887765 46788888864 55788999999999999887 677777655554444443
No 58
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.97 E-value=2e-28 Score=251.43 Aligned_cols=346 Identities=28% Similarity=0.337 Sum_probs=287.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060 35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114 (579)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l 114 (579)
.+.+..+...++....++..|.+.++++.+..+. +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 3456677788888889999999999999888887 9999999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060 115 IMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV 194 (579)
Q Consensus 115 l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i 194 (579)
+..+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+ ||+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 158 (352)
T cd06174 80 LLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLI 158 (352)
T ss_pred HHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876 9999999
Q ss_pred hhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhh
Q 008060 195 AGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR 274 (579)
Q Consensus 195 ~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (579)
.+++.++..+...+++ |.++
T Consensus 159 ~~~~~~~~~~~~~~~~------------------------------------------------------------~~~~ 178 (352)
T cd06174 159 LAILGLLLALLLLFLL------------------------------------------------------------RLLL 178 (352)
T ss_pred HHHHHHHHHHHHHHHH------------------------------------------------------------HHHH
Confidence 8887777666554431 1222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hhHHHHHHHH
Q 008060 275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK-LLVISLSGVI 353 (579)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~ 353 (579)
. .....+...........+.|.+.++..+.+....+.......++.+++.++.+++.||++||+ .+..+..+..
T Consensus 179 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (352)
T cd06174 179 L-----LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAA 253 (352)
T ss_pred H-----HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 112223334456677778888888774557777888888999999999999999999999999 8888888887
Q ss_pred HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060 354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV 433 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (579)
++.+.+....+
T Consensus 254 i~~~~~~~~~~--------------------------------------------------------------------- 264 (352)
T cd06174 254 LGLLLLALAPS--------------------------------------------------------------------- 264 (352)
T ss_pred HHHHHHHHhcc---------------------------------------------------------------------
Confidence 77776654321
Q ss_pred ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060 434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513 (579)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~ 513 (579)
.+. .....+..........+....+..|..|++.|++.+|+.+....++..++|.+.+.
T Consensus 265 --------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~ 323 (352)
T cd06174 265 --------------------LAL-LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323 (352)
T ss_pred --------------------HHH-HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22333333333334456777899999999999999999999999999999999999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHhh
Q 008060 514 LTQAIGTSWTFLIFGVISVAALLFVL 539 (579)
Q Consensus 514 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 539 (579)
+.+..+++..+.+.+++.+++.++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 324 LLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999988877654
No 59
>PRK11043 putative transporter; Provisional
Probab=99.97 E-value=4e-28 Score=255.22 Aligned_cols=352 Identities=17% Similarity=0.125 Sum_probs=256.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI 115 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll 115 (579)
+.+...+..+....+.|.+|.+.+++|.++.+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 87 (401)
T PRK11043 11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAV---SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG 87 (401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 333345555677788899999999999988888 99999999999999999999999999999999999999999999
Q ss_pred HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060 116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA 195 (579)
Q Consensus 116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~ 195 (579)
+.++++++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..++|.+++++.+..+ ||+.|++.
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~ 166 (401)
T PRK11043 88 MLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATL 166 (401)
T ss_pred HHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Confidence 99999999999999999999888888888899999999999999999988999999999999999988877 99999999
Q ss_pred hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR 275 (579)
Q Consensus 196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (579)
+++.++..+..++++|+++. .+ ++.++.++++.++++.++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~----~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 207 (401)
T PRK11043 167 FAITLLLILPTLRLKPSKKA----RK-----------------------------------QSQDALTFKQLLKSKTYLG 207 (401)
T ss_pred HHHHHHHHHHHHHcCCCCCc----cc-----------------------------------cchHHHHHHHHHcChhHHH
Confidence 88877776666566655320 00 0001234566777777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060 276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS 355 (579)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 355 (579)
..+..... ...+.....+.|.++++.+. +....++......++.+++.++.+++.||+++|+.+........++
T Consensus 208 ~~~~~~~~-----~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~ 281 (401)
T PRK11043 208 NVLIFAAC-----SAAFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS 281 (401)
T ss_pred HHHHHHHH-----HHHHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 33322211 12334455677888887655 5566677767777788899999999999999988766555555444
Q ss_pred HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccc
Q 008060 356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD 435 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (579)
.+.+.........
T Consensus 282 ~~~~~~~~~~~~~------------------------------------------------------------------- 294 (401)
T PRK11043 282 VIAIWLASLLSHP------------------------------------------------------------------- 294 (401)
T ss_pred HHHHHHHHHhccC-------------------------------------------------------------------
Confidence 4333222110000
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008060 436 LCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT 515 (579)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~ 515 (579)
..+..++...+...+.+ ...+.......+..| +.+|++.|+.++.+..++..++.+.|.+.
T Consensus 295 -----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 295 -----------------SLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred -----------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 01112222222222222 223444445556665 57899999999999999999999999887
Q ss_pred Hhcccch
Q 008060 516 QAIGTSW 522 (579)
Q Consensus 516 ~~~g~~~ 522 (579)
+......
T Consensus 356 ~~~~~~~ 362 (401)
T PRK11043 356 STPLLTT 362 (401)
T ss_pred CCChhHH
Confidence 7544433
No 60
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.97 E-value=2.7e-28 Score=254.86 Aligned_cols=363 Identities=18% Similarity=0.161 Sum_probs=251.0
Q ss_pred HHhhhhhhhhhhhhhhhhhhccc--ccchhhHHHHHH-----HHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 41 LLFGYDTGVISGALLYIRDDFKS--VDRKTLLQESIV-----SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 41 ~~~~~~~~~~~~~lp~i~~~~~~--s~~~~~~~g~l~-----s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
+.+++++..+++..+.+.+++.. ++++. +.+. +...++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 79 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV---ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT 79 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45678888888888888887653 23333 3332 33444455789999999999999999999999999999
Q ss_pred HHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc--
Q 008060 114 VIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-- 183 (579)
Q Consensus 114 ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~-- 183 (579)
+++++++++. .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~ 159 (394)
T TIGR00883 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL 159 (394)
T ss_pred HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999875 488999999999999999999999999999999999999999999999999988876542
Q ss_pred ------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhc
Q 008060 184 ------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEG 257 (579)
Q Consensus 184 ------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (579)
..+ ||+.|++.+++.++..+....+||+|++...+ +++
T Consensus 160 ~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~ 203 (394)
T TIGR00883 160 GDDALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ-----------------------------------EKH 203 (394)
T ss_pred CHHHhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-----------------------------------hcc
Confidence 334 99999988776666555555667765421100 000
Q ss_pred cchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 258 SSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID 337 (579)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 337 (579)
+..+.+.++.++++.... .. .....+...........+.|.++++..+.+....+.......++.+++.++.|+++|
T Consensus 204 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 280 (394)
T TIGR00883 204 KKKRGPIRETLTKHRKPF--LL-GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD 280 (394)
T ss_pred ccccCCHHHHHHhchHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233455555544111 11 112222333445666778899986655556667777778888889999999999999
Q ss_pred hcCCchhhHHHHHHHHHHH-HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccC
Q 008060 338 RTGRKKLLVISLSGVILSL-GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS 416 (579)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (579)
|++||+.+.....+..+.. ..+.......
T Consensus 281 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 310 (394)
T TIGR00883 281 RIGRRPVLIIFTVLAALLAVPLLMALLDSG-------------------------------------------------- 310 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------------------------------
Confidence 9999998765544443332 2222211100
Q ss_pred CCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH
Q 008060 417 HSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA 496 (579)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~ 496 (579)
..+......++...+.+ ...+...++..|.+|++.|+++.|+.
T Consensus 311 ------------------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~ 353 (394)
T TIGR00883 311 ------------------------------------SFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLA 353 (394)
T ss_pred ------------------------------------chHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeeh
Confidence 01222222233332222 23445568899999999999999985
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHH
Q 008060 497 -ATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISV 532 (579)
Q Consensus 497 -~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~ 532 (579)
+....+|..++|.+.|.+.+..| ++..++..++..+
T Consensus 354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 45566888899999999999988 6655555554443
No 61
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=259.99 Aligned_cols=280 Identities=18% Similarity=0.253 Sum_probs=224.0
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
..+..++.+.++++..+++.+|+..+..+.+.+++.||+++... |++.+.+.+++.+++|+.|+++|||+||+++.+
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~---Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v 103 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL---GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV 103 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc---cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence 45567778889999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
|.++|+++.+++++++.||+++++|.+.|+|.+.+.|+++++++|.+|..+|++++++++.+..+|..+|.+++..+...
T Consensus 104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCcchhHHHHhhHHHHHHHHHH-HhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060 185 PGTWRWMLGVAGIPALLQFILM-LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263 (579)
Q Consensus 185 ~~~Wr~~f~i~~i~~l~~~i~~-~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
.+.|||.|+..++++++..++. ++.+|++| +..++.+. +.+.........++
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~----------------------~~~~~~~~ts~~kD 236 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG----------------------ENKMVKPFTSVWKD 236 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc----------------------CCcCCCCccchHHH
Confidence 7789999999999999988884 55566543 11111000 00000112223455
Q ss_pred HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL---SGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT 339 (579)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 339 (579)
.+.+.|++.+....+......+. ...+.+|.|.+... ..+.+.....++..+...++.+|.+++|.++||+
T Consensus 237 l~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 237 LKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred HHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 66666666665444443333332 34444555554432 1222445566777888889999999999999994
No 62
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.97 E-value=2.4e-29 Score=258.93 Aligned_cols=347 Identities=24% Similarity=0.322 Sum_probs=257.0
Q ss_pred HHHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060 37 GIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI 115 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll 115 (579)
++..+...++.....+.+| .+.+++|.+..+. +++.+++.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI---GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH---HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence 4667778888888999999 8999999999888 99999999999999999999999999999999999999999777
Q ss_pred HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060 116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA 195 (579)
Q Consensus 116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~ 195 (579)
..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ ||+.|++.
T Consensus 79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~ 157 (352)
T PF07690_consen 79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLIS 157 (352)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHH
T ss_pred hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccc
Confidence 76768888999999999999999999999999999999999999999999999999999999999997776 99999999
Q ss_pred hHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhh-hHHHhhhcchh
Q 008060 196 GIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI-NLVKLLKTRTV 273 (579)
Q Consensus 196 ~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 273 (579)
+++.++..++ .++++++|+....+.+.++ + .+++.+.. .+++..+++.+
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~ 208 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKES---------------------------E--SKKPKPLKPGFKSLFKNPVL 208 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTTT---------------------------T----HHHCCCH-CTHHHHHHCC
T ss_pred cchhhhhhhhHhhhhhhccccccccccccc---------------------------c--cccccccccccccccccchh
Confidence 9988887765 3445554321110000000 0 00001111 24556666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060 274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFAS-NRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV 352 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 352 (579)
|...+ ..+...........+.|.|+++..+.+ ....+.......+.++++.++.+++.||+++|+.........
T Consensus 209 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (352)
T PF07690_consen 209 WILLI-----AFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL 283 (352)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhh-----hhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 51111 122223345567788888854444445 567777788888889999999999999999988877766666
Q ss_pred HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060 353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (579)
.++.+.+.......
T Consensus 284 ~~~~~~~~~~~~~~------------------------------------------------------------------ 297 (352)
T PF07690_consen 284 ILGALGLLLLPFSS------------------------------------------------------------------ 297 (352)
T ss_dssp HHHHHHHCCSHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhh------------------------------------------------------------------
Confidence 66555554432210
Q ss_pred cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060 433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA 508 (579)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~ 508 (579)
..+...+...+.+.+.+ ...+....+..|..|++.+|++.|+.++..+++++++|
T Consensus 298 --------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 298 --------------------SPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp --------------------HHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 01222333333333222 23556678999999999999999999999999999987
No 63
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.3e-29 Score=260.99 Aligned_cols=365 Identities=19% Similarity=0.220 Sum_probs=276.2
Q ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHhhc
Q 008060 59 DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLGV 136 (579)
Q Consensus 59 ~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~R~l~Gig~ 136 (579)
.+++.+..+. +++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++..++. +++.+++.|+++|++.
T Consensus 66 ~~~~ws~~~k---~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 66 GEYDWSSTEK---GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred ceecCCHHHH---HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 4677777777 9999999999999999999999999999999999999999999998875 4568899999999999
Q ss_pred hhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC-cCcchhHHHHhhHHHHHHHHHHHh-ccCChh
Q 008060 137 GMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA-PGTWRWMLGVAGIPALLQFILMLL-LPESPR 214 (579)
Q Consensus 137 g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~-~~~Wr~~f~i~~i~~l~~~i~~~~-lpesp~ 214 (579)
|..+|+...+.+.|.|++||++..++..++..+|.+++.+++|++.+. .| |++.|++.++++++..++|++ ..|+|.
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999998 65 999999999999999888655 456665
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Q 008060 215 WLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINT 294 (579)
Q Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (579)
. .+.-..+|.+. +++...++ ..++..+.+++++++++.+|...+ ..++.+.+++.
T Consensus 222 ~-h~~is~~El~~-----------------I~~~k~~~--~~~~~~~vP~~~i~ts~~vwai~~-----~~f~~~~~~~~ 276 (466)
T KOG2532|consen 222 K-HPNISEKELKY-----------------IEKGKSEA--HVKKKPPVPYKAILTSPPVWAIWI-----SAFGGNWGFYL 276 (466)
T ss_pred c-CCCCCHHHHHH-----------------HHhccccc--ccCCCCCCCHHHHHcCHHHHHHHH-----HHHHHHHHHHH
Confidence 3 11111122111 11111111 111114678999999999975444 34555667889
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--------hh-hHHHHHHHHHHHHHHHHHhcc
Q 008060 295 VMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK--------KL-LVISLSGVILSLGVLSAVFHE 365 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+..|.|.|+++..+.+....+++++++.+...+..+++|.++||+.+| |+ -.++....+++++.+.+...
T Consensus 277 l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~- 355 (466)
T KOG2532|consen 277 LLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD- 355 (466)
T ss_pred HHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC-
Confidence 999999999999999999999999999999999999999999998653 22 22344444444443333211
Q ss_pred cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060 366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
T Consensus 356 -------------------------------------------------------------------------------- 355 (466)
T KOG2532|consen 356 -------------------------------------------------------------------------------- 355 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---hcccch
Q 008060 446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ---AIGTSW 522 (579)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~---~~g~~~ 522 (579)
...+..++.+.+.....+... +..+....+. .+++.+..+|+.+....+.++++|.+.|.+.+ ...|+.
T Consensus 356 ------~~~~~a~~~l~~~~~~~g~~~-~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~ 427 (466)
T KOG2532|consen 356 ------EHRLLAVILLTIAIGLSGFNI-SGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI 427 (466)
T ss_pred ------CcchHHHHHHHHHHHHcccch-hhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence 112233333333333322221 1212222232 46788999999999999999999999999984 236999
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 008060 523 TFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~ 541 (579)
.|++.+++.+++.++..++
T Consensus 428 VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 428 VFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHhchheeEe
Confidence 9999999999998775544
No 64
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.97 E-value=1.7e-27 Score=249.34 Aligned_cols=370 Identities=14% Similarity=0.044 Sum_probs=257.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI 115 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll 115 (579)
++++.++..+.........+.+.++++.+..+. +++.+.+.+++.++++++|+++||+|||++++++.++.+++.++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQ---PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 445566666655555566666788888877766 99999999999999999999999999999999999999998888
Q ss_pred HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060 116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA 195 (579)
Q Consensus 116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~ 195 (579)
+.++.+. ++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.+++++.+. .|+..+.+.
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~ 159 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVC 159 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 7776664 78899999999999999999999999999999999999999999999999999999875 377777776
Q ss_pred hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR 275 (579)
Q Consensus 196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (579)
+...++..+..+.+||+|++...++. ++ .. ..+ ......+.++++|.++.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~-------------~~~---------------~~~~~~~~l~~~~~~~~ 209 (393)
T PRK11195 160 ALIYLLAALFNLFIPRLGARRPGQSW-NP-IA-------------LLR---------------DFFHACRVLWRDKLGRF 209 (393)
T ss_pred HHHHHHHHHHHhcCCCCcccccccCC-CH-HH-------------HHH---------------HHHHHHHHHHhCchhHH
Confidence 66555555556677876531100000 00 00 000 00112345667776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060 276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS 355 (579)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 355 (579)
..+..... +.......+..|.++++..+.+....+++.....++.++++++.+++.||.++++.+..+.. ..+.
T Consensus 210 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~ 283 (393)
T PRK11195 210 SLAGTTLF-----WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLV 283 (393)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHH
Confidence 33322221 11223444555677776666677788899899999999999999999999998887766643 2222
Q ss_pred HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccc
Q 008060 356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD 435 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (579)
...+....+
T Consensus 284 ~~~~~~~~~----------------------------------------------------------------------- 292 (393)
T PRK11195 284 VLLMALQHS----------------------------------------------------------------------- 292 (393)
T ss_pred HHHHHHHhH-----------------------------------------------------------------------
Confidence 222221100
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc-chhhhHHHHHHHHHHHHHHHHHHHHH
Q 008060 436 LCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF-RGVCGGIAATANWISNLIVAQSFLSL 514 (579)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~g~~~gi~~~~~~~g~~i~~~~~g~~ 514 (579)
.|...+...+.+.+.+.. .+...+...+..|++. +|.+.++.++..+++..++..+++.+
T Consensus 293 ------------------~~~~~~~~~~~G~~~g~~-~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 293 ------------------LLPAYPLLILIGALGGFF-VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred ------------------HHHHHHHHHHHHHhhhhh-hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 122223332333333322 2334456667655554 79999999999999999999998855
Q ss_pred HHhcccchhhHHHHHHHHHHHHHhhh
Q 008060 515 TQAIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 515 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+..|.+..+.+.+...++++.+.+.
T Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 354 -VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred -HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788887777766666655555433
No 65
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.97 E-value=9.7e-28 Score=250.01 Aligned_cols=268 Identities=21% Similarity=0.212 Sum_probs=212.1
Q ss_pred hhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhH
Q 008060 45 YDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGA 124 (579)
Q Consensus 45 ~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ 124 (579)
+....+.|.+|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSV---QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 445667799999999999998888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060 125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204 (579)
Q Consensus 125 ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i 204 (579)
+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|++.+++.++..+
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776 99999998887776655
Q ss_pred H-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHH
Q 008060 205 L-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGL 283 (579)
Q Consensus 205 ~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (579)
. .+++||+++.. ++++ .+.+....+.++.++++..+...+.
T Consensus 161 ~~~~~~~~~~~~~----~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---- 202 (377)
T PRK11102 161 LVFFFIPETLPKE----RRQP------------------------------FHLRTTIRNFASLFRHKRVLGYMLA---- 202 (377)
T ss_pred HHHHhCCccCccc----ccCC------------------------------CChHHHHHHHHHHHcChHHHHHHHH----
Confidence 5 55667753210 0000 0000012344566777766543322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060 284 QVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS 355 (579)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 355 (579)
.+..+.+......+.|.++.+..+.+....+.......++.+++.++.+++.||+|||+.+..+..+..+.
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 203 -SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM 273 (377)
T ss_pred -HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 12223344555556677666554446677788888888999999999999999999999988777654443
No 66
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.96 E-value=2.2e-27 Score=255.14 Aligned_cols=375 Identities=15% Similarity=0.049 Sum_probs=262.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-----cchHH-HHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRTS-ILVADFLF 109 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-----Grr~v-l~~~~~l~ 109 (579)
+.+..+..++.....++.+|...++.|.+.++. +.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i---g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTI---GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 444455666677788888899888888877777 665 3334443 6899999999999 99986 66777777
Q ss_pred HHHHHHHHhc---chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC-c
Q 008060 110 FVGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA-P 185 (579)
Q Consensus 110 ~i~~ll~~~a---~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~-~ 185 (579)
+++..+.++. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+. .
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777775 47888999999999999999999999999999999999999999999999999999999999883 4
Q ss_pred CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060 186 GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265 (579)
Q Consensus 186 ~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (579)
+ ||..|++.+++.++..+..+++||+++.. .+ ++ . .++....+++
T Consensus 172 G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~--------------------------~----~~~~~~~~l~ 216 (491)
T PRK11010 172 G-WQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK--------------------------T----LEQAVVAPLR 216 (491)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc--------------------------c----hhhhHHHHHH
Confidence 5 99999999987777766666678764210 00 00 0 0000122455
Q ss_pred HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS-LVTSGLNAAGSIVSIYFIDRTGRKKL 344 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~ 344 (579)
+.++++..+...+..+.. ..+......+.+.|+.+..+.+....+... ....++.+++.+++|+++||+++|+.
T Consensus 217 ~~~~~~~~~~~ll~~~l~-----~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~ 291 (491)
T PRK11010 217 DFFGRNNAWLILLLIVLY-----KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA 291 (491)
T ss_pred HHHcCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666666655433332221 122333344556666443344666666665 45567889999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060 345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (579)
+..+..+..++.+.+........
T Consensus 292 l~i~~~l~~l~~l~~~~l~~~~~--------------------------------------------------------- 314 (491)
T PRK11010 292 LMIFGILQGVSNAGYWLLSITDK--------------------------------------------------------- 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---------------------------------------------------------
Confidence 77665555544433322111000
Q ss_pred cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHH
Q 008060 425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISN 504 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~ 504 (579)
..+.......+....++.+. +..+++..++.+++.+++..|+.+....+|+
T Consensus 315 ----------------------------~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~ 365 (491)
T PRK11010 315 ----------------------------NLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGR 365 (491)
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 01111212222122222222 2335777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060 505 LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
.+++.+.|.+.|..||...|.+.+++++++.+..+..
T Consensus 366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887776543
No 67
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.96 E-value=4.2e-27 Score=247.01 Aligned_cols=358 Identities=15% Similarity=0.107 Sum_probs=252.8
Q ss_pred HHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060 40 GLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA 118 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~ 118 (579)
.++.........+.++ ++.+++|.+..+. |++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMV---GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555 4678899988887 99999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHH
Q 008060 119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP 198 (579)
Q Consensus 119 a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~ 198 (579)
+++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++. ..+ ||+.|++.++.
T Consensus 96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~ 173 (400)
T PRK11646 96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVL 173 (400)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999999999999999999999998 444 99999998877
Q ss_pred HHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHH
Q 008060 199 ALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGL 277 (579)
Q Consensus 199 ~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (579)
.++..++ .++.||.+. .+ .+++.+.++++.+++|.++...
T Consensus 174 ~~~~~i~~~~~~~~~~~-----~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 214 (400)
T PRK11646 174 FVLAAAFNAWLLPAYKL-----ST----------------------------------VRTPVREGMTRVLRDKRFVTYV 214 (400)
T ss_pred HHHHHHHHHHhCCcccc-----cc----------------------------------cchhhHHHHHHHHcCchHHHHH
Confidence 6665544 444554210 00 0000112455667777765433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhHHHHHHHHHHH
Q 008060 278 IAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID-RTGRKKLLVISLSGVILSL 356 (579)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~ 356 (579)
+..... +........+.|.++++.++. ....+.+.....++...+....+++.| |++.++.+..++.+..++.
T Consensus 215 ~~~~~~-----~~~~~~~~~~~p~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 215 LTLTGY-----YMLAVQVMLMLPIMVNDIAGS-PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM 288 (400)
T ss_pred HHHHHH-----HHHHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 322111 111223345788998887774 455566656555555555555566655 4665666666666666665
Q ss_pred HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccc
Q 008060 357 GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDL 436 (579)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (579)
.++....+
T Consensus 289 ~~l~~~~~------------------------------------------------------------------------ 296 (400)
T PRK11646 289 FPIGMVSN------------------------------------------------------------------------ 296 (400)
T ss_pred HHHHHhhh------------------------------------------------------------------------
Confidence 54443211
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 437 CHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ 516 (579)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~ 516 (579)
.+...+...++..+.. ...+...++..+..|++.||+++|+.+....+|..++|.+.|.+.|
T Consensus 297 -----------------~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 297 -----------------LQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred -----------------HHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 1112222222222222 2234556788899999999999999999999999999999999998
Q ss_pred hcc----cchhhHHHHHHHHHHHHH
Q 008060 517 AIG----TSWTFLIFGVISVAALLF 537 (579)
Q Consensus 517 ~~g----~~~~~~~~~~~~~~~~~~ 537 (579)
..+ ....+...+++.+++.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 359 LGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHhhcCCcchHHHHHHHHHHHHHHH
Confidence 753 344555555555555444
No 68
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=258.54 Aligned_cols=298 Identities=21% Similarity=0.195 Sum_probs=229.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhh-hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
+..+.++..+++.++....+...++. .+..+.+|.+....+. +.+.++++++++++++++|.+.||++..+.+...
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l---~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~ 117 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL---GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS 117 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh---hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence 34556666777777777777765433 3334668888888888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc--
Q 008060 106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-- 183 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~-- 183 (579)
.+++++..++....+|++.+++.|++.|+.+++.+|....+++.|+.+++|++.++++.+..++|.++|.+++..+..
T Consensus 118 ~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 118 GILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 999999998888899999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ----CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhcc
Q 008060 184 ----APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGS 258 (579)
Q Consensus 184 ----~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
.. +|||.|++.+++.++..++ ++++|+.|..-.-..++|+ .-..++ .++... ....++
T Consensus 198 ~~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek-~~~~~~-------------~~~~~~--~~~~~~ 260 (495)
T KOG2533|consen 198 GSGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK-ELVVER-------------LRESPS--GGIENK 260 (495)
T ss_pred CCCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH-HHHHHH-------------HHhccC--CCcccc
Confidence 23 5999999999988888776 6778998851100111110 000000 000000 001111
Q ss_pred chhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060 259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR 338 (579)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 338 (579)
.++..+++.+++|.+|...+..++ .....+++.+|+|.++.+..+.+..++..+..+..++++++.+++|+++||
T Consensus 261 ~~~~~~~~a~~dp~vw~~~l~~~~-----~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 261 FKWKGFKEALKDPGVWPFSLCYFF-----LKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHH-----HhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 456789999999999865554433 344567788999999998555678888999999999999999999999999
Q ss_pred c----CCchhhHHHH
Q 008060 339 T----GRKKLLVISL 349 (579)
Q Consensus 339 ~----~~~~~~~~~~ 349 (579)
. .+|.......
T Consensus 336 ~~~~~~~~~~~~~~~ 350 (495)
T KOG2533|consen 336 LKTIFARRLLFIVFL 350 (495)
T ss_pred HhhhHHHHHHHHHHH
Confidence 4 4444444333
No 69
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.96 E-value=7.8e-27 Score=244.84 Aligned_cols=353 Identities=17% Similarity=0.100 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060 30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~ 109 (579)
++.+....+......+......+.+|.+.+++|.+..+. +++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV---QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 334444444445556677788889999999999998888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060 110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
.++.++..++++++.+++.|++.|++.+...+....++.|++++++|+++.++...+..+|..++|.+++.+.+..+ ||
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~ 162 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR 162 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999988776 99
Q ss_pred hHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhh
Q 008060 190 WMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLL 268 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (579)
+.|++.++..++..+. .+++||+++.. + + ++..+..+++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~-~---------------------------------~~~~~~~~~~~~ 204 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRPAD----A-R---------------------------------RTRVLASYRTLL 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCccc----c-c---------------------------------hhHHHHHHHHHH
Confidence 9999988766655444 55677764210 0 0 000123455667
Q ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHH
Q 008060 269 KTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVIS 348 (579)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 348 (579)
++|.++...+..+. .+.+......+.+.++++..+.+....++......++.+++..+.+++.||.+++.. ..
T Consensus 205 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~ 277 (394)
T PRK11652 205 SNRRFNCYLLMLIG-----TLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QS 277 (394)
T ss_pred cChHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 77766554432221 122344445556777777555566677777777778888888999999999873322 22
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060 349 LSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI 428 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (579)
.....++.+++........
T Consensus 278 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 296 (394)
T PRK11652 278 VICCLLAGLLMWIPGWFGV------------------------------------------------------------- 296 (394)
T ss_pred HHHHHHHHHHHHHHHHhcc-------------------------------------------------------------
Confidence 2222222222211110000
Q ss_pred cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060 429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~ 508 (579)
...|.......+...+.+. ..+...+...|.+| +.+|++.++.+....+|+++++
T Consensus 297 -----------------------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~ 351 (394)
T PRK11652 297 -----------------------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAA 351 (394)
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Confidence 0122223333333333332 24455566677776 5789999999999999999999
Q ss_pred HHHHHHHHh
Q 008060 509 QSFLSLTQA 517 (579)
Q Consensus 509 ~~~g~~~~~ 517 (579)
.+.+.+.+.
T Consensus 352 ~~~~~~~~~ 360 (394)
T PRK11652 352 LLSAMLPQT 360 (394)
T ss_pred HHHHHccCC
Confidence 988877654
No 70
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.96 E-value=5.9e-27 Score=246.21 Aligned_cols=360 Identities=14% Similarity=0.076 Sum_probs=260.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
+..+++..+..++.....++++|.+++++|.+..+. |++.+.+.+++.+++++.|++.||+|||++++.++++++++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~---g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA---ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 456667778888888999999999999999998888 99999999999999999999999999999999999999999
Q ss_pred HHHHHh---cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc----
Q 008060 113 AVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---- 185 (579)
Q Consensus 113 ~ll~~~---a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~---- 185 (579)
.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+....
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~ 161 (410)
T TIGR00885 82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ 161 (410)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 988644 4689999999999999999999999999999999999999999999999999999999998774321
Q ss_pred ---------------------CcchhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH
Q 008060 186 ---------------------GTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEI 242 (579)
Q Consensus 186 ---------------------~~Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (579)
.+||+.|++.+++.++..+.+.+. ||.++ +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~------------------- 214 (410)
T TIGR00885 162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S------------------- 214 (410)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c-------------------
Confidence 149999999888766655444333 32110 0
Q ss_pred HHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHHHHHHHH
Q 008060 243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRTALLLSLVT 321 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 321 (579)
+ +++.....+..+++|+|.++...+..++ ..........+++.|.++.+ ..+...+.......
T Consensus 215 --------~---~~~~~~~~~~~~~~~~~~~~~~~l~~f~-----yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~ 278 (410)
T TIGR00885 215 --------D---AKQISFSASLSRLARIRHYREGVIAQFF-----YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGA 278 (410)
T ss_pred --------c---cccccchhhHHHHHhChhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 0 0000111234466777777654433222 12223345567788876543 22333333344445
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccc
Q 008060 322 SGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCM 401 (579)
Q Consensus 322 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (579)
.....+|+++++++.||+++|+++.+...+..++.++.....
T Consensus 279 ~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~-------------------------------------- 320 (410)
T TIGR00885 279 MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG-------------------------------------- 320 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--------------------------------------
Confidence 567899999999999999999988777766666655554421
Q ss_pred ccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeec
Q 008060 402 KCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNS 481 (579)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (579)
+...++.+.+...+.+ .++|..++...
T Consensus 321 ----------------------------------------------------~~~~~~~l~~~glf~s-~~fp~i~sl~~ 347 (410)
T TIGR00885 321 ----------------------------------------------------GHVGLYCLTLCSAFMS-LMFPTIYGIAL 347 (410)
T ss_pred ----------------------------------------------------ChHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1112333333343333 34577778888
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchhhHHHHHHH
Q 008060 482 EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI------GTSWTFLIFGVIS 531 (579)
Q Consensus 482 ~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~------g~~~~~~~~~~~~ 531 (579)
+..+++.+..+.++..+. +|+++.|.+.|.+.|.. +++.+|++..++.
T Consensus 348 ~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 348 KGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred hhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 888877655455555543 99999999999999954 4666776544333
No 71
>PRK10054 putative transporter; Provisional
Probab=99.96 E-value=4.1e-27 Score=246.68 Aligned_cols=363 Identities=11% Similarity=0.079 Sum_probs=259.6
Q ss_pred HHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM 116 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~ 116 (579)
+..++.........+.+| .+.+++|.+..+. |++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 444555566666666665 4667899998888 999999999999999999999999999999999999999999999
Q ss_pred HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhh
Q 008060 117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG 196 (579)
Q Consensus 117 ~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~ 196 (579)
+++++++.+++.|++.|.+.+...+....+..|.+|+++|++++++.....++|.+++|.+++++.+ .+ ||..|++.+
T Consensus 91 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~ 168 (395)
T PRK10054 91 PLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAA 168 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHH
Confidence 9999999999999999988888888889999999999999999999999999999999999999875 44 999999888
Q ss_pred HHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060 197 IPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR 275 (579)
Q Consensus 197 i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (579)
++.++..+. .+++||+++. ++.+ + .+..+.++.+|+|.++.
T Consensus 169 ~~~~i~~i~~~~~~~~~~~~----~~~~-------------------------------~---~~~~~~~~~~~~~~~~~ 210 (395)
T PRK10054 169 ICSAFPLVFIQIWVQRSEKA----IATE-------------------------------T---GSVWSPSVLLQDKALLW 210 (395)
T ss_pred HHHHHHHHHHHHHHhccccc----cccc-------------------------------h---hhhhhhhhhccCceehH
Confidence 777666544 4445554210 0000 0 00112356678887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060 276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG--FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI 353 (579)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 353 (579)
..+..++.... ......+.+.+..... ..+....+.......+.........|++.||.++|+.+..++.+..
T Consensus 211 ~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 285 (395)
T PRK10054 211 FTCSGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFV 285 (395)
T ss_pred HHHHHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHH
Confidence 55443332221 2222234444443221 2233444555555556566667788999999999999888887777
Q ss_pred HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060 354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV 433 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (579)
++...+....+
T Consensus 286 ~~~~~~~~~~~--------------------------------------------------------------------- 296 (395)
T PRK10054 286 IGLVGFIFSGN--------------------------------------------------------------------- 296 (395)
T ss_pred HHHHHHHHcch---------------------------------------------------------------------
Confidence 77665543211
Q ss_pred ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060 434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513 (579)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~ 513 (579)
..+..++...++..+. ....|...+.+.+..|++.|++..+..+ ..++|.+++|.+.|.
T Consensus 297 -------------------~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~ 355 (395)
T PRK10054 297 -------------------SLLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV 355 (395)
T ss_pred -------------------HHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence 0111122222222222 1223455677888899999999988765 677999999999999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHh
Q 008060 514 LTQAIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 514 ~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
+.|..|+...|++.+++..+..++.
T Consensus 356 l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 356 ILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHcChhhHHHHHHHHHHHHHHHH
Confidence 9999998888887776666665544
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.96 E-value=3.1e-26 Score=240.13 Aligned_cols=364 Identities=14% Similarity=0.099 Sum_probs=240.6
Q ss_pred HHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHH-HHHHHHHhHhhhhccccchHHH-HHHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSI-LVADFLFFVGAV 114 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~l-g~~i~~l~~G~lsDr~Grr~vl-~~~~~l~~i~~l 114 (579)
+..++..+......|.+|. +.+++|.+..+. |++.+...+ ++.++++++++ +||+||||.+ ..+.++.+++..
T Consensus 22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMV---GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 3355566666666676665 678899988887 998776544 66666655666 9999999875 456666677788
Q ss_pred HHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccch--hhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHH
Q 008060 115 IMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRG--ALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML 192 (579)
Q Consensus 115 l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~--~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f 192 (579)
+.+++++++.+++.+.+.|...+...|....+..|+.++++|. ...++.+.+.++|.+++|++++++.+..+ ||..|
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f 176 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMY 176 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHH
Confidence 8889999998877666555555667888888888888766553 44578888999999999999999988777 99999
Q ss_pred HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
++.++.+++..+. ++++||.++. +++.+ .+ .... .+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~----~~~~---~~~~ 215 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMRKE---LPLAT-------------------------------GT----LEAP---RRNR 215 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCC---Ccccc-------------------------------cc----cccc---cccc
Confidence 9998877766655 4557776420 00000 00 0000 0111
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060 272 T-VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS 350 (579)
Q Consensus 272 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 350 (579)
+ .+...... ...+........+.|.|+++..+.+....+.+.....+..+++.++.|+++||++||+.+..+..
T Consensus 216 ~~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~ 290 (393)
T PRK15011 216 RDTLLLFVIC-----TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAV 290 (393)
T ss_pred ccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1 11111111 11122334455678888876555566666766666667788899999999999999988766655
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060 351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN 430 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (579)
...+....+... +
T Consensus 291 ~~~~~~~~~~~~-~------------------------------------------------------------------ 303 (393)
T PRK15011 291 AGVCFYAGMLMA-H------------------------------------------------------------------ 303 (393)
T ss_pred HHHHHHHHHHHH-h------------------------------------------------------------------
Confidence 444433222211 1
Q ss_pred cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060 431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS 510 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~ 510 (579)
..+..+....+.....+.. .+....+..|..|+ .+|+++++.+...++|..++|.+
T Consensus 304 ----------------------~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l 359 (393)
T PRK15011 304 ----------------------SPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL 359 (393)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 0111122222111121111 11223556788875 58999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhhccC
Q 008060 511 FLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPE 544 (579)
Q Consensus 511 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (579)
.|.+.+..|++..|.+.+++.+++.+..+ ..||
T Consensus 360 ~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 360 AGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 99999999999999888888887776654 3454
No 73
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.96 E-value=1.5e-26 Score=241.60 Aligned_cols=361 Identities=14% Similarity=0.001 Sum_probs=263.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHH----HHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSI----LVADFLFFV 111 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl----~~~~~l~~i 111 (579)
+.+.++..++......|.+|.+.+++|.+..+. |++.+++.+...++++++|+++||+|||... ..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i---g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~ 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI---GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 445566777777888999999999999988888 9999999999999999999999999985433 222222222
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
..+..+++++.+++.|+++|.+.+...|...++..++ .++|+++.+......++|.+++|++++++.+..+ ||..
T Consensus 86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~ 160 (382)
T TIGR00902 86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNI 160 (382)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHH
Confidence 2444678999999999999999888889888887665 4678999999999999999999999999999887 9999
Q ss_pred HHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 192 LGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 192 f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
|++.++..++.. ..+.++|+++. +++ ++ +++.....+..+++|+|
T Consensus 161 f~~~~~~~~~~~-~~~~~~~~~~~---~~~-~~------------------------------~~~~~~~~~~~~~l~~~ 205 (382)
T TIGR00902 161 LAILTAGLAFML-IGFLIKPTIPP---KDA-IP------------------------------EDESQGDSAFIALLKNP 205 (382)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCCC---Ccc-cc------------------------------ccccccchhHHHHHcCh
Confidence 988765533333 33334443210 000 00 00001123467888988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG 351 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 351 (579)
+++...+...+. .........+.|.++++.+. +....++......++.+++.++.+++.||+++|+.+.++.+.
T Consensus 206 ~~~~~l~~~~l~-----~~~~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~ 279 (382)
T TIGR00902 206 MNLRFLAAVCLI-----QGAHAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIA 279 (382)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHH
Confidence 887655443332 23455666678889888655 556667777788888999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060 352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS 431 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (579)
..+...++....+
T Consensus 280 ~~~~~~~~~~~~~------------------------------------------------------------------- 292 (382)
T TIGR00902 280 CVGRWAIIGAIEA------------------------------------------------------------------- 292 (382)
T ss_pred HHHHHHHHHhHhh-------------------------------------------------------------------
Confidence 8888777654321
Q ss_pred ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH-HHHHHHHHHHHHH
Q 008060 432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA-TANWISNLIVAQS 510 (579)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~-~~~~~g~~i~~~~ 510 (579)
.|..+..-.+-...++.. .+....++++. |++.|+++.++.+ ....+|..++|.+
T Consensus 293 ----------------------~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 293 ----------------------FPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333444344332 23344677777 8889999999986 4567999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060 511 FLSLTQAIGTSWTFLIFGVISVAALLF 537 (579)
Q Consensus 511 ~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (579)
.|.+.|..|+ ..|+..++++++++++
T Consensus 349 ~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 349 AGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999986 6788888888877554
No 74
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.96 E-value=4.5e-27 Score=243.81 Aligned_cols=293 Identities=17% Similarity=0.132 Sum_probs=213.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
..+++.+........+++..|. +.+++|.+..+. +++.+++.+++.+++++.|+++||+|||++++++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL---GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh---hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4566667777888889999995 999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC--------
Q 008060 114 VIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA-------- 184 (579)
Q Consensus 114 ll~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~-------- 184 (579)
+++++++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++......+|..+++.+++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999 99999999999999866 4566788999999999999999999988888888887777665531
Q ss_pred -cCcchhHH-HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchh
Q 008060 185 -PGTWRWML-GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK 261 (579)
Q Consensus 185 -~~~Wr~~f-~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (579)
..+||+.| +..+++.++..++ ..+.+|+|+.. +.++ +. ...+. . ...++...
T Consensus 161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~-----~~~~~--------~-------~~~~~~~~ 215 (366)
T TIGR00886 161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PATG-KL-----SFKGA--------R-------WSVGTGAL 215 (366)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----ccch-hc-----ccccc--------c-------ccccchhH
Confidence 11499999 4445444443333 45566665311 0000 00 00000 0 00000011
Q ss_pred hhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060 262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR 341 (579)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 341 (579)
....+.+++|.++...+.. +...........+.|.|+++..+.+...++.+.....+.+++++++.|+++||++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~ 290 (366)
T TIGR00886 216 GDQLKVFRDRHTWILALLY-----SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG 290 (366)
T ss_pred HHHHHHHhccchhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence 2455677777765433322 22223345566778889887655567777877788888899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 008060 342 KKLLVISLSGVILSLGVLSA 361 (579)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~ 361 (579)
|+.+..+......+..++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~ 310 (366)
T TIGR00886 291 ARKLLMSFLGVAMGAFLVVL 310 (366)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 98887777666665555543
No 75
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.96 E-value=7.8e-27 Score=241.27 Aligned_cols=337 Identities=16% Similarity=0.170 Sum_probs=243.6
Q ss_pred HhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcch
Q 008060 42 LFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN 121 (579)
Q Consensus 42 ~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~ 121 (579)
.........++.+|.+.+++|.+..+. +++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++
T Consensus 11 ~~~~~~~~~~~~lp~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~ 86 (355)
T TIGR00896 11 NLRPALTSVGPLLPQIRSALGMSFSVA---GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG 86 (355)
T ss_pred cccCccccCcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence 333344667899999999999998888 999999999999999999999999999999999999888888877 7889
Q ss_pred hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHH
Q 008060 122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPAL 200 (579)
Q Consensus 122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l 200 (579)
++.+++.|++.|++.+...+....++.|++| ++|++++++...+.++|..+++.+++.+.+..+ +||+.|.+.++..+
T Consensus 87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999888888888999987 579999999999999999999999988876543 39999887776544
Q ss_pred HHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHH
Q 008060 201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG 280 (579)
Q Consensus 201 ~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (579)
+.. ..++|+.++. + + ++++..+...++.+|+|.++...+..
T Consensus 166 ~~~--~~~~~~~~~~---~-~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (355)
T TIGR00896 166 LAL--LAWIPQVRRR---V-A---------------------------------ANQTTTRLTPVRIWRSPLAWQVTVFF 206 (355)
T ss_pred HHH--HHHhhhhccc---c-C---------------------------------CCCCCCCCCCchhhcCHhHHHHHHHH
Confidence 332 2233443210 0 0 00000012344567777665433221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHHHH
Q 008060 281 VGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG-RKKLLVISLSGVILSLGVL 359 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~ 359 (579)
+.....+.....|.|.++++.+. +....+.......++.++++++.|++.||++ ||+.+..+..+..++.+.+
T Consensus 207 -----~~~~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T TIGR00896 207 -----GLQSGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL 280 (355)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 22233455667788999987655 6667788888889999999999999999994 5666666666666666555
Q ss_pred HHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccc
Q 008060 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHD 439 (579)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (579)
.....
T Consensus 281 ~~~~~--------------------------------------------------------------------------- 285 (355)
T TIGR00896 281 LFAPM--------------------------------------------------------------------------- 285 (355)
T ss_pred HHhhh---------------------------------------------------------------------------
Confidence 43311
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060 440 ESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE-IYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI 518 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~ 518 (579)
.+. .....++..+. ....+...+...+ ..+++.++...++.+..++++++++|.+.|.+.|..
T Consensus 286 --------------~~~-~~~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 286 --------------HGL-WAWALVLGLGQ-GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred --------------hHH-HHHHHHHHHhh-hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001 11222222222 1223333344443 344567789999999999999999999999999988
Q ss_pred c
Q 008060 519 G 519 (579)
Q Consensus 519 g 519 (579)
|
T Consensus 350 g 350 (355)
T TIGR00896 350 G 350 (355)
T ss_pred c
Confidence 7
No 76
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.95 E-value=2.6e-26 Score=252.55 Aligned_cols=307 Identities=15% Similarity=0.126 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
.++.+++..+...+.....+..++.+.++|+++..+. |++.+.+.++++++.++.|++.||+|||+.+.++++++++
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~---G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS---GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc---eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 3344556777778888999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc---------------------------------------------------hhhHHHHHHHHHHhhchhhh
Q 008060 112 GAVIMAAAP---------------------------------------------------NPGALITGRVFVGLGVGMAS 140 (579)
Q Consensus 112 ~~ll~~~a~---------------------------------------------------~~~~ll~~R~l~Gig~g~~~ 140 (579)
+++++++.+ .+..++++|+++|+|.+..+
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999987752 25677899999999999999
Q ss_pred hhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc---------------------CcchhHHHHhhHHH
Q 008060 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------------------GTWRWMLGVAGIPA 199 (579)
Q Consensus 141 ~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~---------------------~~Wr~~f~i~~i~~ 199 (579)
+...+++.|++|+++|+++++++..+..+|.++|+++++++.+.+ +.||..|++.+++.
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887543 12677788888877
Q ss_pred HHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHH
Q 008060 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA 279 (579)
Q Consensus 200 l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (579)
++..+.++++|++.+....+.+.+..++ +... ... ...........++.....++++++|.++...+.
T Consensus 271 ~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~ 338 (633)
T TIGR00805 271 LLTSIPFFFFPKALPKEGKRVNVDVHET--EKLE-KSE---------DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILA 338 (633)
T ss_pred HHHHHHHHhCccccCCcccccchhhhhh--hccc-ccc---------cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7776666777765221000000000000 0000 000 000000000011123456788898887654444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhhcCC--chhhHHHHHHHHHHH
Q 008060 280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG-LNAAGSIVSIYFIDRTGR--KKLLVISLSGVILSL 356 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~ 356 (579)
.+ .....++.+..|+|.|+++..+.+...++++.....+ +.++|.+++|+++||+++ |+.+..+.++..++.
T Consensus 339 ~~-----~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 339 QV-----IDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 33 3344567788899999998777777778777766554 568999999999999984 466666666666665
Q ss_pred HH
Q 008060 357 GV 358 (579)
Q Consensus 357 ~~ 358 (579)
++
T Consensus 414 ~~ 415 (633)
T TIGR00805 414 LL 415 (633)
T ss_pred HH
Confidence 44
No 77
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.95 E-value=5.9e-26 Score=239.48 Aligned_cols=378 Identities=13% Similarity=0.068 Sum_probs=256.0
Q ss_pred HHHHHHHhhhhhhhh-hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccc-hHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVI-SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILVADFLFFVGA 113 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~-~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Gr-r~vl~~~~~l~~i~~ 113 (579)
+++..+..+...... +++.+.+.+++|.+..+. |++.+++.++..++++++|.++||+|| |+++.++.++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i---Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI---GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 344455555555555 555566778899998888 999999999999999999999999965 778888888888888
Q ss_pred HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhh--------hcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060 114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS--------EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP 185 (579)
Q Consensus 114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~--------e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~ 185 (579)
.+..+.++++.+++.|++.|++.+...+...++.. |......|.+.+| .+|.++++.+++.+....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~ 157 (418)
T TIGR00889 84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL 157 (418)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc
Confidence 88889999999999999999987777776655432 2222223445444 468888888888774332
Q ss_pred CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060 186 GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265 (579)
Q Consensus 186 ~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (579)
.|+. |++.++..++..+..+++||+|+. +.+++ . ... +..+.+..
T Consensus 158 -~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~---------------------------~--~~~-~~~~~~~~ 202 (418)
T TIGR00889 158 -SNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAK---------------------------M--SIK-VMLGLDAF 202 (418)
T ss_pred -hhHH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccc---------------------------c--CHH-HHhhhhHH
Confidence 2554 445555555555555677887531 00000 0 000 00012345
Q ss_pred HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFAS-------NRTALLLSLVTSGLNAAGSIVSIYFIDR 338 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 338 (579)
+++|+|.++...+..++... .......+.|.++++.+... ....+.......+..+++.+..++++||
T Consensus 203 ~~~k~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr 277 (418)
T TIGR00889 203 ILFKNKRMAIFFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR 277 (418)
T ss_pred HHhcCCCeeeHHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888877654444333222 22334455677777665432 2445677777788889999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCC
Q 008060 339 TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS 418 (579)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (579)
+|||+++..+.++..++..++........
T Consensus 278 ~g~r~~l~~~~~~~~v~~~l~~~~~~~~~--------------------------------------------------- 306 (418)
T TIGR00889 278 FGIKKVMLLSLVAWALRFGFFAYGDPEYF--------------------------------------------------- 306 (418)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcCcchh---------------------------------------------------
Confidence 99999999988888777655544211000
Q ss_pred CCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH-
Q 008060 419 NKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA- 497 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~- 497 (579)
..+...+..++.....+ ...+....++.|.+|++.||+++|+.+
T Consensus 307 ----------------------------------~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 307 ----------------------------------GYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred ----------------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 01111222223333222 223444577899999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060 498 TANWISNLIVAQSFLSLTQAI------GTSWTFLIFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 498 ~~~~~g~~i~~~~~g~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
....+|.+++|.+.|.+.|.. ||+..|.+.+++.++..++.+++.+|+++.
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 567899999999999999984 578889999999888888888888877544
No 78
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.95 E-value=5.1e-25 Score=234.43 Aligned_cols=323 Identities=19% Similarity=0.219 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060 30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~ 109 (579)
...+..+++.....++.....+.+++.+..++|.++. . .|+.+.+.++.+++.++.|+++|.||||++++.+.++.
T Consensus 43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~-~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 43 IASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDN-W---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCcc-c---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3344445555555666777778888999999997643 4 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060 110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
.+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|....++..........+++.++..+.... +||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WR 196 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWR 196 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-Ccc
Confidence 99999999999999999999999999876664 4566899999999988887777666666667788887766554 499
Q ss_pred hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhc--------------------------CCCchhh---
Q 008060 190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVY--------------------------PAHEVET--- 240 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~--------------------------~~~~~~~--- 240 (579)
|.|++.++...+.+++.+++..+|++...+++....++.+++++ +.+....
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~ 276 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAP 276 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhh
Confidence 99999998777666553333333333222222111111122211 0000000
Q ss_pred hHHHhhhhhhhhHHhh--ccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch---hHHH
Q 008060 241 EIRDLKESVDKEIEEE--GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN---RTAL 315 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 315 (579)
.......-..----|. ..+++.-..+++|+++.....+ +..+.....++....+.|.........+. ...+
T Consensus 277 lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~l----vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~ 352 (599)
T PF06609_consen 277 LVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALL----VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG 352 (599)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee
Confidence 0000000000000011 1223445667888754322221 12222222344555556666554443333 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhh-HHHHHHHHHHHHHHHHH
Q 008060 316 LLSLVTSGLNAAGSIVSIYFIDRTGRKKLL-VISLSGVILSLGVLSAV 362 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~ 362 (579)
+...+..++..+|.++.|.+..+++|-|.. +++..++.+++.++...
T Consensus 353 ~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~ 400 (599)
T PF06609_consen 353 WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV 400 (599)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence 777788888889999999999998875554 46666666555555443
No 79
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.95 E-value=1.7e-25 Score=236.79 Aligned_cols=374 Identities=14% Similarity=0.045 Sum_probs=236.4
Q ss_pred HHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHH-
Q 008060 40 GLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA- 117 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~- 117 (579)
.++.........+.+|. +.+++|.+..+. |++.+++.++..++++++|+++||+|||++++++..+.+++.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 95 (420)
T PRK09528 19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDT---GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566664 556699988888 9999999999999999999999999999999887666554433211
Q ss_pred --hcc-----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060 118 --AAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW 190 (579)
Q Consensus 118 --~a~-----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~ 190 (579)
.++ .+...++.+++.|.+.....+....+..+ . .++|++.++......++|.++++++++.+.+. +|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~ 171 (420)
T PRK09528 96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQI 171 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchH
Confidence 111 11112223333343333333333333222 2 24567888898999999999999999998775 5999
Q ss_pred HHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060 191 MLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT 270 (579)
Q Consensus 191 ~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (579)
.|++.++++++..++.++++++++..... + ++ +.+++++...++..+.+|+
T Consensus 172 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---------------------------~~~~~~~~~~~~~~~~l~~ 222 (420)
T PRK09528 172 NFWLGSGSALILLVLLFFAKPDAPSTAKV-A-NA---------------------------LGANASAVSLKDALALLKL 222 (420)
T ss_pred hHHHHHHHHHHHHHHHhcccccccchhhh-c-cc---------------------------hhcccccccHHHHHHHccC
Confidence 99998877776666655543332100000 0 00 0000111123345667888
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060 271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI 347 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 347 (579)
|.++...+....... .+.....+.|.++.+.. ..+....+.+.....+..+++.++.|++.||+++|+.+..
T Consensus 223 ~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 297 (420)
T PRK09528 223 PKFWFLVLYVIGVAC-----FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLL 297 (420)
T ss_pred CCeEeehHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 877654443322211 12222233455554331 2234556677777778888999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccc
Q 008060 348 SLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACL 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (579)
+..+..++.+++....+
T Consensus 298 ~~~l~~~~~~l~~~~~~--------------------------------------------------------------- 314 (420)
T PRK09528 298 AGTIMAVRIIGSGFATG--------------------------------------------------------------- 314 (420)
T ss_pred HHHHHHHHHHHHHhccc---------------------------------------------------------------
Confidence 88777776666543211
Q ss_pred ccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH-HHHHHHHHHHH
Q 008060 428 ISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI-AATANWISNLI 506 (579)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi-~~~~~~~g~~i 506 (579)
.|.......+.....+. ..+....+..|.+|++.+++..+. .++...+|.++
T Consensus 315 --------------------------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i 367 (420)
T PRK09528 315 --------------------------PLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF 367 (420)
T ss_pred --------------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH
Confidence 12222222222222211 122234677788899999988766 57778899999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccC
Q 008060 507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPE 544 (579)
Q Consensus 507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (579)
+|.+.|.+.|..||+..|...+++.++..++.++..++
T Consensus 368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888877766555543
No 80
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.95 E-value=2.8e-25 Score=231.98 Aligned_cols=357 Identities=15% Similarity=0.003 Sum_probs=248.8
Q ss_pred HHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccch----HHHHHHHHHHHHHHHH
Q 008060 40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR----TSILVADFLFFVGAVI 115 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr----~vl~~~~~l~~i~~ll 115 (579)
++..........|.+|.+.+++|.+..+. |++.+++.++..++++++|+++||+||| +.+.++..+. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i---G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI---GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 34444556778899999999999988888 9999999999999999999999999984 3333222222 2233
Q ss_pred HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060 116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA 195 (579)
Q Consensus 116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~ 195 (579)
...+++++.+++.|++.|++.+...|...++..++ .++|+++++......++|.++||++++++.+..+ ||..|++.
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~ 164 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWIL 164 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHH
Confidence 44568899999999999999988889888887776 3568899999999999999999999999999887 99999887
Q ss_pred hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR 275 (579)
Q Consensus 196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (579)
++..++..+..++.||.++ +++.+ +..++...++++++|+|.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~----~~~~~-------------------------------~~~~~~~~~~~~i~~~~~~~~ 209 (382)
T PRK11128 165 TAGVASMLLGQLLRPTIMP----QGESR-------------------------------QQESAGWPAWKALLKEPTVWR 209 (382)
T ss_pred HHHHHHHHHHHHccCCCCC----ccccc-------------------------------cccccccchHHHHHcChhHHH
Confidence 7655444444444454321 00000 000011245678889888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060 276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS 355 (579)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 355 (579)
..+..++... .......+.|.|+++.+. +....+.+.....++.++..++.+++.||+++|+.+..+.....++
T Consensus 210 ~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 210 FLLCVSLLQG-----SHAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVR 283 (382)
T ss_pred HHHHHHHHHH-----HhHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 5544333322 234455566788877666 4555667777777888999999999999999999988888877776
Q ss_pred HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccc
Q 008060 356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD 435 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (579)
.+++....+
T Consensus 284 ~~~~~~~~~----------------------------------------------------------------------- 292 (382)
T PRK11128 284 WGLMGSTTA----------------------------------------------------------------------- 292 (382)
T ss_pred HHHHHhhhh-----------------------------------------------------------------------
Confidence 655543211
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH-HHHHHHHHHHHHHHHHH
Q 008060 436 LCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA-TANWISNLIVAQSFLSL 514 (579)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~-~~~~~g~~i~~~~~g~~ 514 (579)
.|...+..++.+..++.. .+....+..+. +++.+++..++.+ ....+|..++|.+.|.+
T Consensus 293 ------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l 352 (382)
T PRK11128 293 ------------------LPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL 352 (382)
T ss_pred ------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333333332 23334555665 4555688888886 44567779999999999
Q ss_pred HHhcccchhhHHHHHHHHHHHHH
Q 008060 515 TQAIGTSWTFLIFGVISVAALLF 537 (579)
Q Consensus 515 ~~~~g~~~~~~~~~~~~~~~~~~ 537 (579)
.|..|. ..++..+++.+++.++
T Consensus 353 ~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 353 YQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHhccH-HHHHHHHHHHHHHHHH
Confidence 999887 4666666666655443
No 81
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.95 E-value=1e-24 Score=229.40 Aligned_cols=371 Identities=14% Similarity=0.022 Sum_probs=253.2
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-----cchH-HHHHHHHHHH
Q 008060 37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRT-SILVADFLFF 110 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-----Grr~-vl~~~~~l~~ 110 (579)
...++..++........+|.+.++-|.+.++. |++..+... .+.++++|+++||+ |||| .++++.++.+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i---g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI---GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence 34466778888888899999988999999888 888666665 58899999999999 8875 6888888888
Q ss_pred HHHHHHHhc---chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060 111 VGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT 187 (579)
Q Consensus 111 i~~ll~~~a---~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~ 187 (579)
++..+.++. .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|..+++.++..+.+...+
T Consensus 80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 888877776 45788888888889888888999999999999999999999999999999999999999998875424
Q ss_pred chhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060 188 WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL 267 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
||..|++.+++.++..+..+++||+++.. ++.++ .+++.+.+++++
T Consensus 160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~-------------------------------~~~~~~~~~~~l 205 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRS-------------------------------LGEAVVGPLRDF 205 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccch-------------------------------hHHHHHHHHHHH
Confidence 99999998887766655566677764310 00000 000012356678
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCchhhH
Q 008060 268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVT-SGLNAAGSIVSIYFIDRTGRKKLLV 346 (579)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~ 346 (579)
+|+|.++...+...+...... ....+.+.++.+..+.+....+++.... .++.+++.++++++.||+++|+.+.
T Consensus 206 ~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~ 280 (402)
T PRK11902 206 FSRRGAWALLLLIVLYKLGDA-----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM 280 (402)
T ss_pred HhCcCHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 888887765544333222111 1112223334443333566666665443 4457899999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060 347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (579)
.+..+..+..+.+........
T Consensus 281 ~~~~~~~l~~l~~~~~~~~~~----------------------------------------------------------- 301 (402)
T PRK11902 281 LFGVLQAVSNLGYWVLAVTPK----------------------------------------------------------- 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----------------------------------------------------------
Confidence 666665555443332211000
Q ss_pred cccCcccccccccccccccccCCCCCcchHHHHHHHH---HHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060 427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLAL---YIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS 503 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g 503 (579)
..+.......+ ..........+....++.+.+|.+ ..++.+....++
T Consensus 302 --------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 351 (402)
T PRK11902 302 --------------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVG 351 (402)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHH
Confidence 01222222211 111111112334445666666654 445566666778
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060 504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+.+++.+.|.+.|..|+...|.+.+++++++.++.+.
T Consensus 352 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 352 RVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 8777778999999999999999999888888766543
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.95 E-value=2.3e-25 Score=264.23 Aligned_cols=396 Identities=11% Similarity=0.011 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH---HHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV---ADF 107 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~---~~~ 107 (579)
.+...+++.+.+.+....+..+.. .+..+.+.+.. .+.++..+++.+.++++++++|+++||+|||+++.. ..+
T Consensus 16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~ 93 (1140)
T PRK06814 16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNN--ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEI 93 (1140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchH--HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHH
Confidence 334445555555555544443333 33344333222 234889999999999999999999999999997533 222
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060 108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT 187 (579)
Q Consensus 108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~ 187 (579)
+..+..+.....++++.++++|+++|++.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++....+
T Consensus 94 ~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~- 172 (1140)
T PRK06814 94 GIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN- 172 (1140)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 3333333333458999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred chhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060 188 WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL 267 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
|++.|+..++..++.+++.+++|+++... ++...+ . ...+.....++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------~---~~~~~~~~~~~~~ 221 (1140)
T PRK06814 173 FVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID--------------------------R---NIIRSTITLLKYA 221 (1140)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec--------------------------c---chHHHHHHHHHHH
Confidence 99999555555565555566677653200 000000 0 0000012345666
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060 268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI 347 (579)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 347 (579)
.+++.++...+..... +.....+..+.|.|+++..+.+....+++.....++.++|.++.|+++|+..+++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~ 296 (1140)
T PRK06814 222 KADKRIWLAILGISWF-----WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI 296 (1140)
T ss_pred hcCchHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence 7777776544433322 22334556678999988766677788888899999999999999999998877776666
Q ss_pred HHHHHHHHHHHHHHHhcc-cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060 348 SLSGVILSLGVLSAVFHE-TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC 426 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (579)
+.++..++.+.+...... ........ .
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------------------------------------------~ 324 (1140)
T PRK06814 297 GALLMGLFGLDLAFASSSVPAEPAQLK----------------------------------------------------S 324 (1140)
T ss_pred HHHHHHHHHHHHHhccccccccccccc----------------------------------------------------c
Confidence 555555544433332000 00000000 0
Q ss_pred cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060 427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI 506 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i 506 (579)
++ ........|...+..++++.+.+. ..+...+++.+..|++.+|+++|+.++...++..+
T Consensus 325 ~~------------------~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i 385 (1140)
T PRK06814 325 IL------------------VFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA 385 (1140)
T ss_pred hh------------------hhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH
Confidence 00 000001233334434444433332 23345688899999999999999999999999999
Q ss_pred HHHHHHHHHHh-cccchhhHHHHHHHHHHHHH
Q 008060 507 VAQSFLSLTQA-IGTSWTFLIFGVISVAALLF 537 (579)
Q Consensus 507 ~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~ 537 (579)
++.+.|.+.+. .++...+++.+++.++..++
T Consensus 386 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 386 GTIILALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999988753 45555555555544444433
No 83
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.94 E-value=5.3e-25 Score=261.73 Aligned_cols=369 Identities=11% Similarity=-0.007 Sum_probs=250.1
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH---Hhcchhh
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAAPNPG 123 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~---~~a~~~~ 123 (579)
......+.+.+..+++.+... .+.+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1146)
T PRK08633 26 LGHKILIQNTLIKAYDGSEQV-ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFW 104 (1146)
T ss_pred HHHHHHHHHHHHHHcCcccHH-HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 344445555666677654433 345899999999999999999999999999999998887665555443 3457899
Q ss_pred HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC--------cCcchhHHHHh
Q 008060 124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA--------PGTWRWMLGVA 195 (579)
Q Consensus 124 ~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~--------~~~Wr~~f~i~ 195 (579)
.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.+. .++|++.+.+.
T Consensus 105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (1146)
T PRK08633 105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV 184 (1146)
T ss_pred HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 33355555544
Q ss_pred hHHH-HHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhh
Q 008060 196 GIPA-LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR 274 (579)
Q Consensus 196 ~i~~-l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (579)
.+.. ++.+++.+.+||+|+....+.+.+ ...........+..+++++.++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~~ 235 (1146)
T PRK08633 185 LLAVAVLGLIFAYRLPKVPAAAPEVFDKK-----------------------------KYLFPKLLWRNLKLLRSDRVLW 235 (1146)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCccccccc-----------------------------ccccHHHHHHHHHHHhcCcHHH
Confidence 4333 333344556677754211000000 0000000123455666777665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060 275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR-TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI 353 (579)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 353 (579)
...+...+. +........+.|.++.+..+.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++++
T Consensus 236 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 236 LAIIGLSYF-----WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLA 310 (1146)
T ss_pred HHHHHHHHH-----HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHH
Confidence 543332222 222344555677887765554555 77888888889999999999999999999888887777777
Q ss_pred HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060 354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV 433 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (579)
++.+++.....
T Consensus 311 ~~~~~~~~~~~--------------------------------------------------------------------- 321 (1146)
T PRK08633 311 LSLFLLPTAPS--------------------------------------------------------------------- 321 (1146)
T ss_pred HHHHHHHHhhh---------------------------------------------------------------------
Confidence 66655544311
Q ss_pred ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060 434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513 (579)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~ 513 (579)
.+..++..++++.+.+. ..+...+++.+..|++.||+++|+.+++.++|.++++.+.+.
T Consensus 322 --------------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 322 --------------------LASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred --------------------HHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12223333333333322 234456788899999999999999999999999888877665
Q ss_pred HHHh-cccchhhHHHHHHHHHHHHHhhh
Q 008060 514 LTQA-IGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 514 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+... .++...+++.+.+.++..++...
T Consensus 381 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1146)
T PRK08633 381 FSGLGLSPAGLFYLIALVTLIGTLYTLL 408 (1146)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 23334555555555444444333
No 84
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.94 E-value=2e-24 Score=226.81 Aligned_cols=373 Identities=14% Similarity=0.056 Sum_probs=249.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l 114 (579)
+....++.........|.+|. +.+++|.+..+. |++.+++.++..++++++|+++||+|||+.++.+....+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT---GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 334455555666667777776 456789988888 9999999999999999999999999999999887766655443
Q ss_pred HH---Hhcc-----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 115 IM---AAAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 115 l~---~~a~-----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
.. .+.+ .+..+++.|++.|++.+...+....+..|.. +++++.++......++|.++++.+++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-- 159 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-- 159 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--
Confidence 22 1221 2344567788899988888888877776653 2345677888888899999999999988765
Q ss_pred cchhHHHHhhHHHHHHHHHHHhc-cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060 187 TWRWMLGVAGIPALLQFILMLLL-PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (579)
+||+.|++.+++.++..++.+.. ||+|+. ++..+ ..+.++++.+.++..
T Consensus 160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----------------------~~~~~~~~~~~~~~~ 209 (396)
T TIGR00882 160 DPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN-----------------------ALGANASAFSLKLAL 209 (396)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc-----------------------ccccccCCCCHHHHH
Confidence 59999999988777766554443 443220 00000 000001111234567
Q ss_pred HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008060 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK 342 (579)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 342 (579)
+.+|+|.++...+..+.. ...+.....+.|.|+++.. ..+....+.......+..+++.+..+++.||++||
T Consensus 210 ~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~ 284 (396)
T TIGR00882 210 ELFRQRKFWMFVLYVVGV-----ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK 284 (396)
T ss_pred HHHcCCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888876543332221 1223334345566666543 22334456666777777888899999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060 343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF 422 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (579)
+.+.++..+.++...++....
T Consensus 285 ~~l~~~~~l~~l~~~~~~~~~----------------------------------------------------------- 305 (396)
T TIGR00882 285 NALLIAGTIMSVRIIGSSFAT----------------------------------------------------------- 305 (396)
T ss_pred hhHHHHHHHHHHHHHHHHhcC-----------------------------------------------------------
Confidence 998888877777665433211
Q ss_pred CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH-HHHHHH
Q 008060 423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI-AATANW 501 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi-~~~~~~ 501 (579)
..+.......+........ ......+..+..|++.+++..+. .+....
T Consensus 306 ------------------------------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~ 354 (396)
T TIGR00882 306 ------------------------------TALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQ 354 (396)
T ss_pred ------------------------------ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence 0222222222222222111 11223455667788888887776 578899
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060 502 ISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 502 ~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+|++++|.+.|.+.|..|++.+|.+.+++.++..+...+
T Consensus 355 lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 355 LAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887766543
No 85
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=244.34 Aligned_cols=414 Identities=16% Similarity=0.144 Sum_probs=296.5
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
...+-|.+++..++..+...-....++.+.+.++++++.+..+. +|+.++......+..++.+.+.||+|.|.+.+.
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~---~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~ 116 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI---AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA 116 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH---HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence 55677888888888877776667777888999999999988887 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHH-HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060 105 ADFLFFVGAVIMAAAPNPGALITGR-VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a~~~~~ll~~R-~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~ 183 (579)
|.++.+++.++.++++++|++++.. ++.|+|.|..+.....++..||++ +|+.+.|+..++.++|.++-|.+...+.+
T Consensus 117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 9999999999999999999998877 889999999999999999988875 49999999999999999999999999999
Q ss_pred CcCcchhHHHHhhHHHHHHHHHHHhccC-ChhHHHhcCCHHHHHHHHHhhcC------------CCchhhh--HHHhhhh
Q 008060 184 APGTWRWMLGVAGIPALLQFILMLLLPE-SPRWLYRKGREEEAQAILRKVYP------------AHEVETE--IRDLKES 248 (579)
Q Consensus 184 ~~~~Wr~~f~i~~i~~l~~~i~~~~lpe-sp~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~~~~~ 248 (579)
..| ||+.+++.+.+.+-..+....+++ +++.... .++..+....... .+..... ..+....
T Consensus 196 ~~G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (509)
T KOG2504|consen 196 KYG-WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATL 271 (509)
T ss_pred HhC-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhh
Confidence 998 999999999887666666444433 3221111 0000000000000 0000000 0000000
Q ss_pred hhhhHHhhccchhhhH----HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 008060 249 VDKEIEEEGSSEKINL----VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGL 324 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (579)
.+.+++......+... .++++++.++. ..+...+...++.....++|.+.+..+. +...+..+....++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~-----~~~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Siigi~ 345 (509)
T KOG2504|consen 272 KRGPDKWRNSPLQAFLSMLDLSLLKDPKFLL-----LALSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSIIGVS 345 (509)
T ss_pred hhCCccccccchhhhhhhhhHHHHcCchHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHHHHh
Confidence 0000001100112222 57777766643 3344455566778888889999997777 455566677778888
Q ss_pred HHHHHHHHHHHHhhcCCchhhH--HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccc
Q 008060 325 NAAGSIVSIYFIDRTGRKKLLV--ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMK 402 (579)
Q Consensus 325 ~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (579)
.++++++.|++.|+...++..+ ++.+..+++.+.+....
T Consensus 346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~--------------------------------------- 386 (509)
T KOG2504|consen 346 DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT--------------------------------------- 386 (509)
T ss_pred hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence 9999999999999988544433 44444444443332221
Q ss_pred cccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc
Q 008060 403 CLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE 482 (579)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (579)
.+..++..+++.++...........++.|
T Consensus 387 ---------------------------------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~ 415 (509)
T KOG2504|consen 387 ---------------------------------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVD 415 (509)
T ss_pred ---------------------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22224444444443333334454568889
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhcc
Q 008060 483 IYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 483 ~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
+.+.+.-..+.|+...+..++..++|.+.|.+.|..| |...|...++..+++.++.+ +.+
T Consensus 416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~-~~~ 476 (509)
T KOG2504|consen 416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL-ILR 476 (509)
T ss_pred HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH-HhH
Confidence 9999999999999999999999999999999999988 88899999998888887643 344
No 86
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3e-24 Score=212.51 Aligned_cols=369 Identities=15% Similarity=0.136 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
..+.+....++.++......+++|.+++.|+++..+. +++...++.|+.+.+++.|++.+|+|+|+-+++|+.++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a---~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av 90 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA---SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV 90 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH---HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445556667888888899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHH---hcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC----
Q 008060 112 GAVIMA---AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA---- 184 (579)
Q Consensus 112 ~~ll~~---~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~---- 184 (579)
++.++. -..++..++++-|+.|.|.+...+.+..+++...++++..+.+++.+..+++|.+++|++++.+...
T Consensus 91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~ 170 (422)
T COG0738 91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL 170 (422)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence 999984 5678999999999999999999999999999999998889999999999999999999999998773
Q ss_pred --------------cCcchhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhh
Q 008060 185 --------------PGTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKES 248 (579)
Q Consensus 185 --------------~~~Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (579)
...||++|...+...++..+..... |+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------- 216 (422)
T COG0738 171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------- 216 (422)
T ss_pred ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------
Confidence 1248888888887766666665443 33211
Q ss_pred hhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 008060 249 VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAG 328 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (579)
...+..+.+.....+++++|.++...+..++.. ........|++.|+.+..+.+..++........++.++|
T Consensus 217 ---~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYV-----G~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vG 288 (422)
T COG0738 217 ---AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYV-----GAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVG 288 (422)
T ss_pred ---ccccccccccchHHHHHhChHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 000111111125788899998887666544332 234566678889998866667888888888899999999
Q ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCC
Q 008060 329 SIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASS 408 (579)
Q Consensus 329 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (579)
++++.++..|+...|.+........+.++......
T Consensus 289 RFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~--------------------------------------------- 323 (422)
T COG0738 289 RFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG--------------------------------------------- 323 (422)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence 99999999999988887766655444444433331
Q ss_pred CCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc
Q 008060 409 PDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF 488 (579)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 488 (579)
+.. .+...+..+.+...+.|..++...+..| +.
T Consensus 324 ---------------------------------------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~ 356 (422)
T COG0738 324 ---------------------------------------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EH 356 (422)
T ss_pred ---------------------------------------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-cc
Confidence 112 2333334444444567877888888888 33
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060 489 RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 489 ~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
...+.+ ......+|+++.|.+.|++.|..|....+.....+|.+..++.
T Consensus 357 ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~ 405 (422)
T COG0738 357 TSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFF 405 (422)
T ss_pred ccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333 3344568999999999999999998877775666666555443
No 87
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-26 Score=226.73 Aligned_cols=382 Identities=18% Similarity=0.117 Sum_probs=276.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhccc--------------------------------------------
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS-------------------------------------------- 63 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~-------------------------------------------- 63 (579)
.|..++..++++.+.+.+..+.+.|++|....+.+-
T Consensus 18 ~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~ 97 (464)
T KOG3764|consen 18 SRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE 97 (464)
T ss_pred ccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence 344556667777778877788888888876554441
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhh
Q 008060 64 ---VDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140 (579)
Q Consensus 64 ---s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~ 140 (579)
...+...+|++.+++.+...+.+++.|.++||+|+|-.+++|++++..+++++++.+++++++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 11223345999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhhhcCCcc-cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhc
Q 008060 141 MTSPLYISEASPAK-IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRK 219 (579)
Q Consensus 141 ~~~~~~l~e~~p~~-~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~ 219 (579)
....++++|.||++ +|++++|+...+.++|..+||++||.+.+..| .+..|++.++++++...+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~----- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE----- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc-----
Confidence 99999999999965 57999999999999999999999999999998 999999999999998888666533311
Q ss_pred CCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 220 GREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299 (579)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (579)
. +++...+..+.++++++|..+........ ...+.....--+
T Consensus 252 -------------------------------~--~~~~~~~~~~~~~Ll~dP~I~~~agai~~-----~n~~lafLePtl 293 (464)
T KOG3764|consen 252 -------------------------------M--DPDSTEQGTPMWSLLMDPYILLIAGAITF-----SNSSLAFLEPTL 293 (464)
T ss_pred -------------------------------c--CccccccCccHHHHHhCchHhhhhcchhh-----ccchHHHhCccc
Confidence 0 01112234568899999987543322211 122233333334
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH--HHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 008060 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV--ISLSGVILSLGVLSAVFHETTSHSPMVSAVE 377 (579)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (579)
+.++.+....+....++......+...+++.++|.+.||++..+.+. .+.+....+.....+.....
T Consensus 294 slwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~----------- 362 (464)
T KOG3764|consen 294 SLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA----------- 362 (464)
T ss_pred HHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH-----------
Confidence 55555555556657788888888999999999999999999444333 33222222222222211100
Q ss_pred ccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHH
Q 008060 378 TSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLA 457 (579)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (579)
.-|..
T Consensus 363 ---------------------------------------------------------------------------~L~vp 367 (464)
T KOG3764|consen 363 ---------------------------------------------------------------------------QLWVP 367 (464)
T ss_pred ---------------------------------------------------------------------------HHhhh
Confidence 01222
Q ss_pred HHHHHHHHHhhccCcccccceeeccccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 008060 458 LVGLALYIIFFSPGMGTAPWIVNSEIYPLR---FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAA 534 (579)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 534 (579)
..++.+.+......+.|.. .+..+.-..+ ..|...++...+..+|.++||.+.|.+.+..|+.|...+.++..++.
T Consensus 368 ~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 368 NFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIY 446 (464)
T ss_pred hHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHH
Confidence 3333333333333333333 2333333333 67899999999999999999999999999999999999999998887
Q ss_pred HHHhhh
Q 008060 535 LLFVLI 540 (579)
Q Consensus 535 ~~~~~~ 540 (579)
.-++.+
T Consensus 447 apvl~l 452 (464)
T KOG3764|consen 447 APVLLL 452 (464)
T ss_pred HHHHHH
Confidence 766544
No 88
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.93 E-value=6.4e-24 Score=225.82 Aligned_cols=337 Identities=15% Similarity=0.079 Sum_probs=232.2
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc----ccchH-HHHHHHHHHHHHHHHHHhcch-----
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRT-SILVADFLFFVGAVIMAAAPN----- 121 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr----~Grr~-vl~~~~~l~~i~~ll~~~a~~----- 121 (579)
...+.+.+++|++.... |++.++..+..++..++.|+++|| +|||| .++++....+++.+++.+.++
T Consensus 21 ~l~~~~~~~~g~s~~~~---g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~ 97 (437)
T TIGR00792 21 YLLFFYTDVLGLSAAFV---GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG 97 (437)
T ss_pred HHHHHHHHccCCCHHHH---HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence 34556778899988888 999999999999999999999997 68755 566788888888887776654
Q ss_pred -hhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhcc-------CcCcchhHH
Q 008060 122 -PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTR-------APGTWRWML 192 (579)
Q Consensus 122 -~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~-------~~~~Wr~~f 192 (579)
+..+++.+++.+++.+...++..++..|.. ++++|++..++...+..+|..+++.+.+.+.. .. +||+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~-g~~~~~ 176 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKF-GWFMFA 176 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cHHHHH
Confidence 456677888889988887777788888887 46889999999988888888877766555442 22 499999
Q ss_pred HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
.+.+++.++..+. ++..+|.++.. + + +++++.......++++++|
T Consensus 177 ~i~~~l~~~~~~~~~~~~~e~~~~~----~-~-----------------------------~~~~~~~~~~~~~~l~~~~ 222 (437)
T TIGR00792 177 LVLALIGVVSLIICFFGTKERYSEI----P-K-----------------------------NIEKKLSLKQIFKALFKND 222 (437)
T ss_pred HHHHHHHHHHHHHHHcCCEecCCCC----C-c-----------------------------ccccCCCHHHHHHHHhCCH
Confidence 9998877766655 45566653100 0 0 0000111123456677888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG 351 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 351 (579)
.++...+..++.. .+......+.+.+.+.... +....+.+.....++.+++.++.++++||+|+|+++..+..+
T Consensus 223 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~ 296 (437)
T TIGR00792 223 QLLILCLAYLFYN-----LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILL 296 (437)
T ss_pred HHHHHHHHHHHHH-----HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 7765444333222 2233333344555544433 344455666667888999999999999999999998888877
Q ss_pred HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060 352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS 431 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (579)
.+++.+.+....+
T Consensus 297 ~~~~~~~~~~~~~------------------------------------------------------------------- 309 (437)
T TIGR00792 297 MVLGYLIFFFAGS------------------------------------------------------------------- 309 (437)
T ss_pred HHHHHHHHHHcch-------------------------------------------------------------------
Confidence 7776665543210
Q ss_pred ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccchhhhHHHHHHHHHHH
Q 008060 432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRGVCGGIAATANWISN 504 (579)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gi~~~~~~~g~ 504 (579)
..+...+...+...+.+. ..+..+++.+|..+ ++.+|..+|+.++...+|.
T Consensus 310 ---------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 310 ---------------------NLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 012222222222222222 23455677777654 5678999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 008060 505 LIVAQSFLSLTQAIGTS 521 (579)
Q Consensus 505 ~i~~~~~g~~~~~~g~~ 521 (579)
.+++.+.|.+.+..|+.
T Consensus 368 ~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 368 ALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999987764
No 89
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.93 E-value=1.6e-23 Score=216.62 Aligned_cols=273 Identities=11% Similarity=0.065 Sum_probs=194.2
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-----cchHH-HHHHHHHHHHHHHHHHhc-
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRTS-ILVADFLFFVGAVIMAAA- 119 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-----Grr~v-l~~~~~l~~i~~ll~~~a- 119 (579)
....++..|.+.+|+|.+..+. |++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~---g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~ 78 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTI---GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV 78 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHH---HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556788899999999999888 887655 455555 99999999998 89887 466777787777777776
Q ss_pred --chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-------cchh
Q 008060 120 --PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRW 190 (579)
Q Consensus 120 --~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-------~Wr~ 190 (579)
.+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+ +||.
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 4666777788888998888899999999999999999999999999999999999999988876654 2999
Q ss_pred HHHHhhHHHHHHHHHHH-hccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhh
Q 008060 191 MLGVAGIPALLQFILML-LLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK 269 (579)
Q Consensus 191 ~f~i~~i~~l~~~i~~~-~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
.|++.++..++..+..+ ..||+++. +.+.++ ++++.+..++++++
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~-------------------------------~~~~~~~~~~~~~~ 204 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQED---ASVPKP-------------------------------LTQAVLKPIREFFQ 204 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc---cccchh-------------------------------HHHHHHHHHHHHHH
Confidence 99999987776665544 35664210 000000 00001224456666
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCchhhHHH
Q 008060 270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVT-SGLNAAGSIVSIYFIDRTGRKKLLVIS 348 (579)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~ 348 (579)
++..+......+ ..+...........+.|.|+++.+. +....+.+.... .+..+++.++++++.||+|||+.+..+
T Consensus 205 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~ 281 (356)
T TIGR00901 205 RKNMIQALLLLL--LIVLYKLGDSAATVLTTLFLLDMGF-SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLF 281 (356)
T ss_pred hcCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 665222222111 1122233455667788888888555 555555555443 356789999999999999999998888
Q ss_pred HHHHHHHHHHHHH
Q 008060 349 LSGVILSLGVLSA 361 (579)
Q Consensus 349 ~~~~~~~~~~~~~ 361 (579)
.++..++..++..
T Consensus 282 ~~~~~~~~~~~~~ 294 (356)
T TIGR00901 282 GIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 8777766655544
No 90
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.93 E-value=2e-23 Score=223.21 Aligned_cols=373 Identities=16% Similarity=0.102 Sum_probs=269.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060 35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114 (579)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l 114 (579)
.++++.+...+...+....++-+..+..-++... +++..+..+...+.++++|.++||++||++++.+-++.++..+
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v---alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~ 90 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMV---ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL 90 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666665555555 9999999999999999999999999999999998887766554
Q ss_pred HHHh-----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060 115 IMAA-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 115 l~~~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
+.++ ..+.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.+...++..++||.++|.+....| -.
T Consensus 91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~ 169 (524)
T PF05977_consen 91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AA 169 (524)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HH
Confidence 4433 24788999999999999999999999999999999999999999999999999999999999988776 78
Q ss_pred hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhh
Q 008060 190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK 269 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
+.|++.++..++.++.....+..++. ++...+ ...+.-+..++-..+
T Consensus 170 ~~f~inalsfl~~i~~l~~~~~~~~~--~~~~~e-------------------------------~~~~~l~~G~ryv~~ 216 (524)
T PF05977_consen 170 AAFLINALSFLISILALLRWKPPPPP--SSLPRE-------------------------------RFFSALREGLRYVRS 216 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccc--cccchh-------------------------------hhhhhHHHHHHHHhc
Confidence 88888877665555444444332110 000000 000001123333444
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHH
Q 008060 270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL 349 (579)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 349 (579)
+|..+..++....+. .....+...+|.+.++..+.+....+++....++++++|.++.+++.+|+++++++..+.
T Consensus 217 ~~~l~~~l~~~~~~~-----l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~ 291 (524)
T PF05977_consen 217 SPPLRSVLLRSFLFN-----LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS 291 (524)
T ss_pred chHHHHHHHHHHHHH-----HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence 555544333222221 122334456788887776667788899999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccccc
Q 008060 350 SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLIS 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (579)
++.+++.+.+.+..+
T Consensus 292 ~~~a~~~~~lal~~~----------------------------------------------------------------- 306 (524)
T PF05977_consen 292 LLFALALLLLALSPS----------------------------------------------------------------- 306 (524)
T ss_pred HHHHHHHHHHhcchH-----------------------------------------------------------------
Confidence 777776666554322
Q ss_pred CcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHH
Q 008060 430 NSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQ 509 (579)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~ 509 (579)
.|...+.+++.+.+.. ...+...+...+..|++.||.++++.++....+..+|..
T Consensus 307 ------------------------~~~~~~~l~l~G~~~~-~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl 361 (524)
T PF05977_consen 307 ------------------------FWLALIALFLAGAAWI-IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL 361 (524)
T ss_pred ------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333332 223344577889999999999999999999999999999
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHhh
Q 008060 510 SFLSLTQAIGTSWTFLIFGVISVAALLFVL 539 (579)
Q Consensus 510 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 539 (579)
+.|.+.+..|...++.+.++..+++.++.+
T Consensus 362 l~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 362 LWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887776666666543
No 91
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.93 E-value=2e-24 Score=210.77 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=128.1
Q ss_pred hhhhhhhhhhhhhcccc----c-chhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh
Q 008060 48 GVISGALLYIRDDFKSV----D-RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP 122 (579)
Q Consensus 48 ~~~~~~lp~i~~~~~~s----~-~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~ 122 (579)
..+-+....+.++|+.- + ....+.|.+.+.|.++..+.++.+|.++||+|||+++++|++..++..++.+.++||
T Consensus 42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F 121 (451)
T KOG2615|consen 42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF 121 (451)
T ss_pred cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555421 1 234556999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc---CcCcchhHH--HHhhH
Q 008060 123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR---APGTWRWML--GVAGI 197 (579)
Q Consensus 123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~---~~~~Wr~~f--~i~~i 197 (579)
..+++.|++.|+..| ......++++|.+++++|+++++.+...+++|.++||.+|+++.. ..+.+...+ ++..+
T Consensus 122 ~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i 200 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFI 200 (451)
T ss_pred HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHH
Confidence 777777999999988 556677999999999999999999999999999999999999987 333222222 11222
Q ss_pred HHHH-HHHHHHhccCC
Q 008060 198 PALL-QFILMLLLPES 212 (579)
Q Consensus 198 ~~l~-~~i~~~~lpes 212 (579)
.... ..+..+++||+
T Consensus 201 ~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 201 LAAGDVTFFPWFLPET 216 (451)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 2222 22335778998
No 92
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.3e-23 Score=200.09 Aligned_cols=370 Identities=17% Similarity=0.171 Sum_probs=286.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060 30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~ 109 (579)
+..+..+.+..+..--..+..+|+++.+.+++|++.... |+++++..+...+.+++..+++.|+|.++.+.+++++.
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a---GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli 87 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA---GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI 87 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence 556666666667777778889999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060 110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
++|.++-... +.+.++.+-.+.|.|.+...+..+.++.+.||++ -+..+|+|.+..++|.++++.+...+.++.++||
T Consensus 88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~ 165 (395)
T COG2807 88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR 165 (395)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence 9999999887 8888999999999999999999999999999976 5999999999999999999999999988876699
Q ss_pred hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhh
Q 008060 190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK 269 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
....+.+.++++.++.|+.-. .|+ + ....+.+..+..+++|
T Consensus 166 ~aL~~WAl~allAl~~WlPq~--~r~-----~--------------------------------~~~~~~~~~~~~~vw~ 206 (395)
T COG2807 166 GALGFWALLALLALLIWLPQA--LRE-----Q--------------------------------AASIATKLVSVRKVWR 206 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--ccc-----c--------------------------------cccccccccccccccc
Confidence 999999999888888766432 110 0 0111111234456788
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHH
Q 008060 270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVIS 348 (579)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 348 (579)
+|..|...+ .+..|...++.+..|+|.++.+.|. +.++++.+.....+..++.++....+.+|. ++|+..+..
T Consensus 207 ~~~aW~vtL-----fmGlqS~~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~ 280 (395)
T COG2807 207 SPLAWQVTL-----FMGLQSLLYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA 280 (395)
T ss_pred CchhHHHHH-----HHHhhHHHHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 887776443 3455666789999999999999988 567778888888888999999999999975 456666666
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060 349 LSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI 428 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (579)
..++.++.+.+.+...
T Consensus 281 ~~~~l~G~~G~~~~P~---------------------------------------------------------------- 296 (395)
T COG2807 281 LLLMLVGLVGLLLAPG---------------------------------------------------------------- 296 (395)
T ss_pred HHHHHHHHHHHHHhhh----------------------------------------------------------------
Confidence 6666666666554321
Q ss_pred cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc-ccccccchhhhHHHHHHHHHHHHHH
Q 008060 429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE-IYPLRFRGVCGGIAATANWISNLIV 507 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~g~~~gi~~~~~~~g~~i~ 507 (579)
... ...+++ .+....+.+++..+.+.. .-.++..+.-.|..+..+++-++.+
T Consensus 297 -----------------------~~~---~lw~~l-lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G 349 (395)
T COG2807 297 -----------------------QLP---ILWALL-LGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFG 349 (395)
T ss_pred -----------------------hHH---HHHHHH-HhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence 011 111222 222222334444444443 3445677888999999999999999
Q ss_pred HHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhh
Q 008060 508 AQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 508 ~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 540 (579)
|.++|++.|..| |...+..+++..++..++.+.
T Consensus 350 P~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 350 PWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 999999999987 777777666666666555443
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.92 E-value=9.9e-23 Score=218.07 Aligned_cols=417 Identities=12% Similarity=0.073 Sum_probs=257.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh-hhh--cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHH
Q 008060 34 FSAGIGGLLFGYDTGVISGALLYI-RDD--FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLF 109 (579)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~lp~i-~~~--~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~ 109 (579)
..+.+..+...+......+.+|.+ .++ +|.+..+. +++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a---g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA---FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 334455566666666666667765 455 88988888 999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc---chhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI---RGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~---R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
+++.++.+++++++.+++.|++.|++.|...+...++++|++|+++ |++++++++.+.++|.++||.+++++.+..+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998754 8889999999999999999999999988777
Q ss_pred cchhHHHHhhHHHHHHHHHHHhccCC----hhHHHhcCCHHHHHHHHHhh---------------cCCCchhhhHHH---
Q 008060 187 TWRWMLGVAGIPALLQFILMLLLPES----PRWLYRKGREEEAQAILRKV---------------YPAHEVETEIRD--- 244 (579)
Q Consensus 187 ~Wr~~f~i~~i~~l~~~i~~~~lpes----p~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~--- 244 (579)
||+.|.+.++..++..+.+++.++. |+. .++.+.++.+...... ............
T Consensus 170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcccccccCCCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999886555544444443322 110 0000111100000000 000000000000
Q ss_pred hhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch----hHHHHHHHH
Q 008060 245 LKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN----RTALLLSLV 320 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 320 (579)
............++ ...+.-|++. . .++.++......+..+.......+.+.++....+. ...+++...
T Consensus 248 ~~~~~~~~~~~~~~----~~~~~~~~~~-~--~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~ 320 (475)
T TIGR00924 248 LAVIIFFFRLAFKP----RLDAVARNKM-Y--AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSL 320 (475)
T ss_pred HHHHHHHHHHHHhc----cCCHHHHhHH-H--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhh
Confidence 00000000000000 0000111111 1 11112222222233344444445555544321111 113455555
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-----chhh--HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccc
Q 008060 321 TSGLNAAGSIVSIYFIDRTGR-----KKLL--VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAA 393 (579)
Q Consensus 321 ~~~~~~~~~~~~g~l~d~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (579)
..+..++..++..++-.|..| +... .+|.++.+++++.+.........+
T Consensus 321 n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~------------------------ 376 (475)
T TIGR00924 321 NPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG------------------------ 376 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------------------
Confidence 555555555554443333333 3333 567777777777766542211000
Q ss_pred ccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcc
Q 008060 394 TADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMG 473 (579)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (579)
.+ ...|+.+.... +.........
T Consensus 377 -------------------------------------------------------~~-~s~~~~i~~~~-~~~~ge~~~~ 399 (475)
T TIGR00924 377 -------------------------------------------------------GL-TSPWFMVLIYL-FQTLGELMIS 399 (475)
T ss_pred -------------------------------------------------------Cc-cCHHHHHHHHH-HHHHHHHHHh
Confidence 00 01233333333 3333334446
Q ss_pred cccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 474 TAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 474 ~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
|....+..+..|++.||..+|+......+|+.+++.+.....+..++...|...++++++..++.++..|
T Consensus 400 p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 400 PLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999988887777777877888888888777776655444
No 94
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.92 E-value=3e-23 Score=212.45 Aligned_cols=301 Identities=14% Similarity=0.077 Sum_probs=203.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccch-hhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~-~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l 114 (579)
+|+..|+.- -+...+.+.|.+.+|+|++..+ . |.+.++++.+++++++++|+++||+|.|+++.++.+.+++..+
T Consensus 32 lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv~---G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~ 107 (511)
T TIGR00806 32 LCFYGFMAQ-FRPGESFITPYLLTVLNFTEETVT---NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWL 107 (511)
T ss_pred HHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 444433333 2777888999999999999998 6 9999999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060 115 IMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV 194 (579)
Q Consensus 115 l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i 194 (579)
+.++++++..+.+.|++.|++.|..+ +...++..|+|+++|+++.++..++..+|.++++++++++. ..+ ||+.+.+
T Consensus 108 L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~L 184 (511)
T TIGR00806 108 LLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999954 455 9986543
Q ss_pred h---hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 195 A---GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 195 ~---~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
. .....+.+++.+++|..+|-+..+.+.+............ .+..........+......-..-..++++..+++
T Consensus 185 n~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~ 262 (511)
T TIGR00806 185 NIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQM--VPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNP 262 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccC--CCCCccccchhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 3 3333444455677886555333332211100000000000 0000000000000000000011234566677777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS 350 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 350 (579)
.+..+.+... +...+++.+.+|.....++.....+...|..-.+..+.+.++++..|++-.+..+...+.++..
T Consensus 263 ~vl~WSlWwa-----~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~ 336 (511)
T TIGR00806 263 QLLLWSLWWV-----FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVV 336 (511)
T ss_pred chhhhhHHHH-----HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 7766555433 3344677777777666665543222244555566666688888999998655544334444443
No 95
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.92 E-value=2.9e-22 Score=209.90 Aligned_cols=374 Identities=14% Similarity=0.019 Sum_probs=248.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHH--HHHHHHHHHHHHHhH-hhhhccccchHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESI--VSMAVAGAIIGAAIG-GWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l--~s~~~lg~~i~~l~~-G~lsDr~Grr~vl~~~~~l~ 109 (579)
...+...++.+++......+.+|.+.++.|.+..+. |++ .++..+...+.++++ ++.+||+||||..++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i---Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~ 79 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL---AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL 79 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence 455667788899999999999999999999988888 886 466677787888888 55799999999876555332
Q ss_pred -HHHHHHHH-h--cch-hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 110 -FVGAVIMA-A--APN-PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 110 -~i~~ll~~-~--a~~-~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
++.....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+.+.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~ 159 (390)
T TIGR02718 80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK 159 (390)
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 1 222 333444555566677777777778888988888888888888888899999999988888888
Q ss_pred cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060 185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL 264 (579)
Q Consensus 185 ~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.+ ||..|++.+++.++..+..++++|+++. +.+ .++.+..+.
T Consensus 160 ~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~----------------------------------~~~~~~~~~ 201 (390)
T TIGR02718 160 FG-QRPAFLLVACVPLASLVCVLWLKDRAVA---SPE----------------------------------APLARRASL 201 (390)
T ss_pred hC-HHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccc----------------------------------cchhhHHHH
Confidence 87 9999999998877766665555443210 000 000012346
Q ss_pred HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCch
Q 008060 265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS-GLNAAGSIVSIYFIDRTGRKK 343 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~ 343 (579)
++.+|+|..+...+..++. .........+.+.|+++.+. +.+..+....... ...+++.++.|++.||+|+|+
T Consensus 202 ~~~l~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~ 275 (390)
T TIGR02718 202 FRFFRRPLAWSLLALALLS-----AMTAVSGFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR 275 (390)
T ss_pred HHHHcCcCHHHHHHHHHHH-----HHHHHHHHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6778888766544433222 22334455567788888766 5566666655554 456788899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060 344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP 423 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (579)
.+..+..+..+..............
T Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 300 (390)
T TIGR02718 276 TFILGVGLAGSLALLWFAQAAFWLA------------------------------------------------------- 300 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-------------------------------------------------------
Confidence 9887766553333222221110000
Q ss_pred ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccc-ccchhhhHHHHHHHHH
Q 008060 424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPL-RFRGVCGGIAATANWI 502 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~gi~~~~~~~ 502 (579)
| ..+.......+.....+.. .+...+...+..++ +.+|+.+++.+...++
T Consensus 301 --------------------------~--~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 351 (390)
T TIGR02718 301 --------------------------P--GIAVAWSCSAFGSLITGIT-SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL 351 (390)
T ss_pred --------------------------C--cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 0 0111111111111112222 22333444455555 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060 503 SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLF 537 (579)
Q Consensus 503 g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (579)
|..++|.+.|.+.|..|+...|...+++.+++.+.
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988998888877776554
No 96
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.92 E-value=1.2e-22 Score=217.62 Aligned_cols=415 Identities=9% Similarity=0.033 Sum_probs=248.6
Q ss_pred HHHHHHHHHHhhhhhhhhhh-hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFF 110 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~~ 110 (579)
+..+++..+...+....+.+ +..++.+++|.+..+. +++.+.+.....+..+++|+++|| +||||+++++.++++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a---~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA---FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 44444444555555544443 4446678899988888 889999998888889999999999 999999999999999
Q ss_pred HHHHHHHhcchhhH-HHHHHHHHHhhchhhhhhHhHhhhhcCCcc--cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060 111 VGAVIMAAAPNPGA-LITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFTRAPGT 187 (579)
Q Consensus 111 i~~ll~~~a~~~~~-ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~--~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~ 187 (579)
++.++++++.+... ++++|+++|+|.|...|...+++.|.+|++ +|++++++++.+.++|.++||.+++++.+..+
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g- 171 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG- 171 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 99999999876554 558999999999999999999999999877 45789999999999999999999999999887
Q ss_pred chhHHHHhhHHHHHHHHHHHhccCChhHHH--hcC-CHHHHHHHH------------HhhcCCCchhhhHHHhh---hhh
Q 008060 188 WRWMLGVAGIPALLQFILMLLLPESPRWLY--RKG-REEEAQAIL------------RKVYPAHEVETEIRDLK---ESV 249 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~--~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~---~~~ 249 (579)
||+.|++.++..++.++.+.+.++..+... .++ +.|.....+ ................. ...
T Consensus 172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 251 (489)
T PRK10207 172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI 251 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999876533333333444332211100 001 011111000 00000000000000000 000
Q ss_pred hhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc---hhHHHHHHHHHHHHH
Q 008060 250 DKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL-SGFAS---NRTALLLSLVTSGLN 325 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~ 325 (579)
.--..+.+ . .+.+|+|.+....+. ......+..+....+..+.+.++ ..... ......+.....+..
T Consensus 252 ~f~~~~~~-~-----~~~~r~r~~~~~~l~---~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~i 322 (489)
T PRK10207 252 IFFREAFK-L-----DKTGRNKMFVAFVLM---LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWV 322 (489)
T ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHHH---HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHH
Confidence 00000000 0 134444443321111 11122223334444556666653 22210 001223333344456
Q ss_pred HHHHHHHHHHHhhcCCchh-------hHHHHHHHHHHHHHHHHHhc-ccCCCCCccccccccccCCCCCCCCcccccccc
Q 008060 326 AAGSIVSIYFIDRTGRKKL-------LVISLSGVILSLGVLSAVFH-ETTSHSPMVSAVETSHFSNLTCPDYSSAATADR 397 (579)
Q Consensus 326 ~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (579)
++.+++.+++.||+++|+. +.+|+++.+++++.+..... ....+
T Consensus 323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~---------------------------- 374 (489)
T PRK10207 323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ---------------------------- 374 (489)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----------------------------
Confidence 6777888999999998873 66777777777655432211 00000
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccc
Q 008060 398 WDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPW 477 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (579)
+....|+.+....+...+.. ...+...
T Consensus 375 ----------------------------------------------------~~~s~~~~i~~~~l~g~Ge~-~~~~~g~ 401 (489)
T PRK10207 375 ----------------------------------------------------GLTSPWFIVLVYLFQSLGEL-FISALGL 401 (489)
T ss_pred ----------------------------------------------------CccCHHHHHHHHHHHHHHHH-HHhHHHH
Confidence 00012333333333333322 2345556
Q ss_pred eeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH----------hcccchhhHHHHHHHHHHHHHhhhh
Q 008060 478 IVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ----------AIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 478 ~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
..+.+..|++.+|.++|+.+....+|+.++..+...... ...+.+.|...++.+++..++.++.
T Consensus 402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999877754421 1124566777777777666665443
No 97
>PTZ00207 hypothetical protein; Provisional
Probab=99.91 E-value=3e-22 Score=214.74 Aligned_cols=417 Identities=13% Similarity=0.092 Sum_probs=262.4
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060 25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
+.++||..+..........+. ...++...+.+++++|.+..+. +++.++. ....+++++.|+++||+|||+++++
T Consensus 22 ~e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l---~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vlli 96 (591)
T PTZ00207 22 NEPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDL---STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVL 96 (591)
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHH---HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 445677766655555444443 3456677789999999998887 7777764 3455678899999999999999999
Q ss_pred HHHHHHHHHHHHHhc------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH-HHHH
Q 008060 105 ADFLFFVGAVIMAAA------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL-SYLI 177 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i-g~~l 177 (579)
+.++++++.++++++ .+++.+.+.|++.|+|.+...+.+...+.+||| ++||+++|+...+.++|.++ +++.
T Consensus 97 g~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 97 SMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred HHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 689999999999999999999999999999997 67999999999999999976 5555
Q ss_pred HHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC--hhHHHhcCCHHHHHHHHHhh----------------------
Q 008060 178 NLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES--PRWLYRKGREEEAQAILRKV---------------------- 232 (579)
Q Consensus 178 ~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes--p~~l~~~~~~~~~~~~~~~~---------------------- 232 (579)
.+++.+ +|+..|++.+++.++..++ +.++++. |++...+++.++.++..++.
T Consensus 176 ~~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~ 252 (591)
T PTZ00207 176 LAFFSD---NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVIL 252 (591)
T ss_pred HHHHHH---hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHH
Confidence 555442 4999898888877776665 4444433 34332222111111110000
Q ss_pred ----------------cCCCchh--------------------------------hhHHHhhhhhh-------hhH----
Q 008060 233 ----------------YPAHEVE--------------------------------TEIRDLKESVD-------KEI---- 253 (579)
Q Consensus 233 ----------------~~~~~~~--------------------------------~~~~~~~~~~~-------~~~---- 253 (579)
.+..... +...+..+..+ .+.
T Consensus 253 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (591)
T PTZ00207 253 IILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVE 332 (591)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccc
Confidence 0000000 00000000000 000
Q ss_pred -H-h-hccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchh-HHHHHHHHHHHHHHHH
Q 008060 254 -E-E-EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS-GFASNR-TALLLSLVTSGLNAAG 328 (579)
Q Consensus 254 -~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 328 (579)
+ + ..+....++++.+++..+|...+. +++....-..+..-+-++.+.. +..... ....+....++++.+|
T Consensus 333 ~~~~~~~P~~~~t~~q~l~~~d~Wll~~~-----~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~G 407 (591)
T PTZ00207 333 TDVDYIAPQFQETFIEGLKTARLWCLLWS-----IFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVG 407 (591)
T ss_pred ccccCCCCCCcchHHHHHhchhHHHHHHH-----HHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhh
Confidence 0 0 001111267777877777654333 2222333333444456666666 441222 1222567788889999
Q ss_pred HHHHHHHHhhcCCch--------h-hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccc
Q 008060 329 SIVSIYFIDRTGRKK--------L-LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWD 399 (579)
Q Consensus 329 ~~~~g~l~d~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (579)
++..|++.....+|+ + +.+..+ +.++.+++....+.
T Consensus 408 Rl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~---------------------------------- 452 (591)
T PTZ00207 408 RLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK---------------------------------- 452 (591)
T ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc----------------------------------
Confidence 999999883332222 1 222222 44444444443210
Q ss_pred ccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccccccee
Q 008060 400 CMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479 (579)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (579)
-...+..++.+..++. ..++....
T Consensus 453 -------------------------------------------------------~~L~~~~~lvg~~~G~-~~~~~~~i 476 (591)
T PTZ00207 453 -------------------------------------------------------AALPLPYFIAAFANGF-MAATIALV 476 (591)
T ss_pred -------------------------------------------------------cHhHHHHHHHHHHhhH-hHHHHHHH
Confidence 0112333333333333 24566689
Q ss_pred eccccccccchhhhHHHHHHHHHHHHHH-HHHHHHHHHhc----------c---cchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 480 NSEIYPLRFRGVCGGIAATANWISNLIV-AQSFLSLTQAI----------G---TSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 480 ~~~~~p~~~~g~~~gi~~~~~~~g~~i~-~~~~g~~~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
++|+|. ++-|+-.-+.....-+|..+- -.++|.++|.- | ++.+|++.+++++.+.+....+.-+|
T Consensus 477 ~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 477 TRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred HHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 999999 888998888888888888777 56788888753 2 56799999999999998876666555
Q ss_pred CC
Q 008060 546 KG 547 (579)
Q Consensus 546 ~~ 547 (579)
|+
T Consensus 556 r~ 557 (591)
T PTZ00207 556 RR 557 (591)
T ss_pred HH
Confidence 53
No 98
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.90 E-value=9.7e-21 Score=199.27 Aligned_cols=413 Identities=14% Similarity=0.099 Sum_probs=266.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHHHHH-HHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSILV-ADFLFF 110 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~vl~~-~~~l~~ 110 (579)
++...+...+......+.++.+.+++|.+.... +++..+..+...+.+++.|+++| |+||||.+++ +.....
T Consensus 9 ~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~---~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 9 VASVAAGVQFGWALQLSLLTPYVQELGIPHAWA---SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 334444445556666777777889999987777 99999999999999999999999 5999999877 466667
Q ss_pred HHHHHHHhcchhh-----------------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccc--hhhhhhhHHHHHHHH
Q 008060 111 VGAVIMAAAPNPG-----------------ALITGRVFVGLGVGMASMTSPLYISEASPAKIR--GALVSTNGFLITSGQ 171 (579)
Q Consensus 111 i~~ll~~~a~~~~-----------------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R--~~~~~~~~~~~~iG~ 171 (579)
++.++.+++++++ .++++-.+..++.....++..++++|.+|+++| +.+.++.+.+.++|.
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 7777777776643 223333444557888888899999999998865 589999999999999
Q ss_pred HHHHHHHHHh--ccCc------------CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCC
Q 008060 172 FLSYLINLAF--TRAP------------GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAH 236 (579)
Q Consensus 172 ~ig~~l~~~l--~~~~------------~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~ 236 (579)
++|+.+++.. .+.. .+.|+.|++.++..++..+. .+..+|.|.....+.+.++.
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~----------- 234 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA----------- 234 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-----------
Confidence 9999999865 2111 14788999988877776666 66678875311000000000
Q ss_pred chhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCch----
Q 008060 237 EVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL-SGFASN---- 311 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 311 (579)
+ +.++......++++++.-+.....+..+++..++...++..+..|.+.++.+ ....++
T Consensus 235 -------------~---~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~ 298 (477)
T TIGR01301 235 -------------A---PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298 (477)
T ss_pred -------------c---cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence 0 0000001112233333222222222233344455566777777777777653 222111
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCC
Q 008060 312 ------RTALLLSLVTSGLNAAGSIVSIYFIDRTGR-KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNL 384 (579)
Q Consensus 312 ------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (579)
....+......+...+.+++..++++|+|+ |++..++.++.+++++...+......+... . +.
T Consensus 299 ~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~-~--------~~- 368 (477)
T TIGR01301 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRY-Y--------DG- 368 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc-c--------cc-
Confidence 112344445555556777788899999985 677688888888888877765431110000 0 00
Q ss_pred CCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHH
Q 008060 385 TCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALY 464 (579)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (579)
..+.| +.|....+..++.....
T Consensus 369 ---------~~~~~-------------------------------------------------~~~~~~~~~~l~~~~~~ 390 (477)
T TIGR01301 369 ---------DGESL-------------------------------------------------PPPTGIKASALIVFAIL 390 (477)
T ss_pred ---------ccccc-------------------------------------------------CcchhhHHHHHHHHHHh
Confidence 00000 00111123344444444
Q ss_pred HHhhccCcccccceeecccccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHhhh
Q 008060 465 IIFFSPGMGTAPWIVNSEIYPL--RFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--TSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~~ 540 (579)
++.+.. ..+++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++.+++++++.++
T Consensus 391 Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 391 GIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred hHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 444433 356778999998884 556999999999999999999998888777665 566888889999999999999
Q ss_pred hccCCCC
Q 008060 541 FVPETKG 547 (579)
Q Consensus 541 ~~~~~~~ 547 (579)
.+|+++.
T Consensus 470 ~~~~~~~ 476 (477)
T TIGR01301 470 LLPRPRV 476 (477)
T ss_pred hCCCCCC
Confidence 9998764
No 99
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.88 E-value=6.3e-20 Score=190.75 Aligned_cols=376 Identities=17% Similarity=0.093 Sum_probs=261.9
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-chHHHHHHHHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-RRTSILVADFLFFVGAVIM 116 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-rr~vl~~~~~l~~i~~ll~ 116 (579)
..++..........|.++..-++.|.+..+. |.+.++..+...++++++|.++||++ +||++.+..++.++.....
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI---G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI---GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555566667788888889999988888 99999999999999999999999986 5778878888888777777
Q ss_pred HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHH-HHHhccCcC--cchhHHH
Q 008060 117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI-NLAFTRAPG--TWRWMLG 193 (579)
Q Consensus 117 ~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l-~~~l~~~~~--~Wr~~f~ 193 (579)
...++++.+++..++..+......|..-++..+... ++++-.|-.....++|.+++... ++.+....+ +....++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 888899999888888888888888888888888876 34666677777778887777544 222322221 1334566
Q ss_pred HhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchh
Q 008060 194 VAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV 273 (579)
Q Consensus 194 i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (579)
+.+...++.....+.+|+.|+.. + .++..++....+..+++|+|++
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~~----~------------------------------~~~~~~~~~~~~~~~llk~~~~ 209 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPKR----S------------------------------AKESVKKLLGLDALKLLKNPRF 209 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCcccc----c------------------------------cCCCcccccchHHHHHhcCccH
Confidence 66655555555556678775200 0 0001111122345689999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060 274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI 353 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 353 (579)
....+..+.. .........|.+.|+++.++.+....+....+..+..++.-...+++.+|+|.|+++.++.+..+
T Consensus 210 ~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~ 284 (400)
T PF03825_consen 210 LVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYA 284 (400)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6544443333 23456677788899999886555666666677788899999999999999999999999998888
Q ss_pred HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060 354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV 433 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (579)
+=..++....++
T Consensus 285 vR~~l~a~~~~~-------------------------------------------------------------------- 296 (400)
T PF03825_consen 285 VRWLLYAYFSDP-------------------------------------------------------------------- 296 (400)
T ss_pred HHHHHHHHhcCC--------------------------------------------------------------------
Confidence 877777665221
Q ss_pred ccccccccccccccCCCCCcchHHHHHHH----HHHHhhccCcccccceeeccccccccchhhhHHHHHH-HHHHHHHHH
Q 008060 434 KDLCHDESREWYTRGCPSKFGWLALVGLA----LYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA-NWISNLIVA 508 (579)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~-~~~g~~i~~ 508 (579)
.+....... +-+..++.. ......++.+..|++.|+++.|+.+.. ..+|++++.
T Consensus 297 --------------------~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~ 355 (400)
T PF03825_consen 297 --------------------WPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGS 355 (400)
T ss_pred --------------------cHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHH
Confidence 111111111 223333222 223347889999999999999998765 679999999
Q ss_pred HHHHHHHHhcccch------hhHHHHHHHHHHHHHhhhhccCCC
Q 008060 509 QSFLSLTQAIGTSW------TFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 509 ~~~g~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
.+.|.++|..|.+. .+.+.+++.++..++.+++.||++
T Consensus 356 ~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 356 LIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999987554 345555555555555555555543
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.88 E-value=4.5e-20 Score=198.76 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=130.2
Q ss_pred HHHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHHHHHHH
Q 008060 37 GIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAV 114 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~~i~~l 114 (579)
++..+...+....+...++ ++.+++|.+..+. +++.+.+........+++|+++|| +|||++++++.++.+++.+
T Consensus 27 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a---~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~ 103 (500)
T PRK09584 27 FSIELWERFGYYGLQGIMAVYLVKQLGMSEADS---ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYA 103 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 5668899988877 777777776666667899999999 5999999999999999999
Q ss_pred HHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc--chhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 115 IMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 115 l~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~--R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
++++++ +.+.+++.|+++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++.+..+ ||+.
T Consensus 104 l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~ 182 (500)
T PRK09584 104 LVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVA 182 (500)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHH
Confidence 998874 56677788999999999999999999999998653 4568899999999999999999999998887 9999
Q ss_pred HHHhhHHHHHHH
Q 008060 192 LGVAGIPALLQF 203 (579)
Q Consensus 192 f~i~~i~~l~~~ 203 (579)
|++.++..++..
T Consensus 183 F~i~~i~~~i~~ 194 (500)
T PRK09584 183 FALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHHH
Confidence 998876444433
No 101
>PRK09669 putative symporter YagG; Provisional
Probab=99.86 E-value=1.9e-19 Score=191.81 Aligned_cols=337 Identities=14% Similarity=0.066 Sum_probs=217.1
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc----ccchHH-HHHHHHHHHHHHHHHHhcch----
Q 008060 51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTS-ILVADFLFFVGAVIMAAAPN---- 121 (579)
Q Consensus 51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr----~Grr~v-l~~~~~l~~i~~ll~~~a~~---- 121 (579)
..+.+.+.+++|++.... |.+.++..+..++..|+.|.++|| +||||. ++.+.+..+++.++....++
T Consensus 30 ~~l~~~~t~~~gls~~~~---g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIM---GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 344556788899988888 999999999999999999999998 787555 55677777777665554443
Q ss_pred --hhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc------CcchhHH
Q 008060 122 --PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------GTWRWML 192 (579)
Q Consensus 122 --~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------~~Wr~~f 192 (579)
++.+++..++.+.+......+-.++..|+. ++++|++..++...+..+|..+++.+...+.... .+|+..+
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~ 186 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM 186 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 455666666777766667777778899988 4678999888888888888777766554433211 1488888
Q ss_pred HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
.+.++++++..+. ++..+|.++. + ++++.....+.++++|+|
T Consensus 187 ~i~~ii~~v~~~~~~~~~~e~~~~---~----------------------------------~~~~~~~~~~~~~~~~n~ 229 (444)
T PRK09669 187 MVMGLLGVVLFFCCFFMTKERYTP---E----------------------------------VDNSSSVWKDLKLLLGNS 229 (444)
T ss_pred HHHHHHHHHHHHHHhCCeEEecCC---C----------------------------------CcCCCCHHHHHHHHhCCc
Confidence 8777766655544 3334443110 0 001112234567788888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG 351 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 351 (579)
.++...+..++.... ........+.|.+.... +.+....+.....+..+++.++.++++||+|+|+.+..+..+
T Consensus 230 ~~~~l~~~~~~~~~~-----~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~ 303 (444)
T PRK09669 230 QWRIMFIFNVVLLTA-----VVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVA 303 (444)
T ss_pred hHHHHHHHHHHHHHH-----HHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 877654443332221 22222222333333322 333444455555677788889999999999999998877665
Q ss_pred HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060 352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS 431 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (579)
.+++...+.....
T Consensus 304 ~~~~~~~~~~~~~------------------------------------------------------------------- 316 (444)
T PRK09669 304 FVILSALIFFIPP------------------------------------------------------------------- 316 (444)
T ss_pred HHHHHHHHHHhCc-------------------------------------------------------------------
Confidence 5543332222111
Q ss_pred ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccchhhhHHHHHHHHHHH
Q 008060 432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRGVCGGIAATANWISN 504 (579)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gi~~~~~~~g~ 504 (579)
+..+...+..++...+.+ ...+..+++.+|..+ .+..|...|+.+++..+|.
T Consensus 317 --------------------~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~ 375 (444)
T PRK09669 317 --------------------SNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL 375 (444)
T ss_pred --------------------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence 012222333333333332 334666788888764 3456778899999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 008060 505 LIVAQSFLSLTQAIGTS 521 (579)
Q Consensus 505 ~i~~~~~g~~~~~~g~~ 521 (579)
++++.+.|.+.+..||.
T Consensus 376 alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 376 AIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999988873
No 102
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.85 E-value=4e-19 Score=190.78 Aligned_cols=357 Identities=13% Similarity=0.051 Sum_probs=221.6
Q ss_pred HHHHHhhhhhhhhhhh-hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccch-HHHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGA-LLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRR-TSILVADFLFFV 111 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~-lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr-~vl~~~~~l~~i 111 (579)
++.+...+.....++. ..++.+.+|++.... |.+..+.-+.-++..|+.|.++| |+||| +.++++.+..++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v---g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i 89 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV---GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV 89 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence 3444444444444443 445677789988777 99999999999999999999999 66994 556668777777
Q ss_pred HHHHHHhcch------hhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 112 GAVIMAAAPN------PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 112 ~~ll~~~a~~------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
+..+....++ +..+++..++.+++.....++-.++..|.. ++++|.+..++...+.++|..+.+.+...+...
T Consensus 90 ~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 90 VLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666544332 334556667778888888888889999998 588999999987777777766655554433221
Q ss_pred c------CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhc
Q 008060 185 P------GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEG 257 (579)
Q Consensus 185 ~------~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (579)
. .+|+....+.+++.++..+. ++..+|.++.. .. +..++++
T Consensus 170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~----~~----------------------------~~~~~~~ 217 (473)
T PRK10429 170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSD----NQ----------------------------VSAEGSH 217 (473)
T ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcc----cc----------------------------ccccccC
Confidence 1 13666666666665554444 34456643100 00 0000011
Q ss_pred cchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 258 SSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID 337 (579)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 337 (579)
..-+..++.++++|.++..++..++.. ........+.+.|.+...+ +....+.+.....++.+++.++.+++.|
T Consensus 218 ~~~~~~~~~~~~n~~~~~ll~~~~~~~-----~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~ 291 (473)
T PRK10429 218 LTLKDIVALIYKNDQLSCLLGMALAYN-----IASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVK 291 (473)
T ss_pred CCHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233445567776655444333222 2333444444555554444 3344455555666778899999999999
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCC
Q 008060 338 RTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH 417 (579)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (579)
|+|+|+.+..+..+.+++.+.+........
T Consensus 292 r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 321 (473)
T PRK10429 292 SLSRRILWAGASIFPVLSCGVLLLMGLAAP-------------------------------------------------- 321 (473)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHhccCc--------------------------------------------------
Confidence 999999988887766655554433211000
Q ss_pred CCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccch
Q 008060 418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRG 490 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g 490 (579)
+..+..++...+...+.+. ..+..+++.+|..+ .|..|
T Consensus 322 ----------------------------------~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G 366 (473)
T PRK10429 322 ----------------------------------HNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCES 366 (473)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchh
Confidence 0122222222222222222 23455677888754 45567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008060 491 VCGGIAATANWISNLIVAQSFLSLTQAIGT 520 (579)
Q Consensus 491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~ 520 (579)
..+|...+...++..+++.+.|.+.+..||
T Consensus 367 ~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 367 IAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999988776
No 103
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.85 E-value=9.5e-20 Score=194.61 Aligned_cols=404 Identities=13% Similarity=0.037 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-----chHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILVAD 106 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-----rr~vl~~~~ 106 (579)
.+.++...++..++.......+.|.+.+++|++..+. +...+...+...+-.+ +|+++||++ ||+.++++.
T Consensus 27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i---~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY---QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG 102 (468)
T ss_pred HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence 3444555567777774445566667778899999888 8899999999999555 999999998 778778877
Q ss_pred HHHH-HHHHHHHhcchhhHHH-HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhh---HHHHHHHHHHHHHHHHHh
Q 008060 107 FLFF-VGAVIMAAAPNPGALI-TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN---GFLITSGQFLSYLINLAF 181 (579)
Q Consensus 107 ~l~~-i~~ll~~~a~~~~~ll-~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~---~~~~~iG~~ig~~l~~~l 181 (579)
++.+ ++....+..++..... +.+++.+++.+...++.-++..|..+ +++....+.. ....++|..+++.+++.+
T Consensus 103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l 181 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL 181 (468)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence 7663 4434444445544444 48899999999999999999999998 5554433333 334458999999999999
Q ss_pred ccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchh
Q 008060 182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK 261 (579)
Q Consensus 182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (579)
.+..+ ||..|++.+++.++..+..++++|++.....+.+.++.. . .........+......
T Consensus 182 ~~~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~ 242 (468)
T TIGR00788 182 LDKTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM---------------N---MALLTLGVLANVKVQI 242 (468)
T ss_pred HHhcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchh---------------h---hhhhhhhHHHHHHHHH
Confidence 98877 999999998877777655677788631000000000000 0 0000000000001112
Q ss_pred hhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060 262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR 341 (579)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 341 (579)
.+.++.+++|..++.++..++... ...+. ....+. +.....+.++...+......+++.+++..+.+++.+|++.
T Consensus 243 ~~l~~~l~~~~i~~~l~fifl~~~--~~~~~-~~~~f~--~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~ 317 (468)
T TIGR00788 243 LGLRGAIQLLEIAKPLIFIFLSYA--NLPGA-SGSVFC--ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY 317 (468)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHh--hcCCC-CceeEE--EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 345566777777664443322111 01111 000000 1112234467778888888889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060 342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL 421 (579)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (579)
|+++.++.++.+++.+....... ||.
T Consensus 318 r~~l~~~~~l~~~~~~~~~~l~~--------------------------------~~~---------------------- 343 (468)
T TIGR00788 318 RLLFGVTTLLYTLSSLFDLILVK--------------------------------RWN---------------------- 343 (468)
T ss_pred HHHHHHHHHHHHHHHhCceeeee--------------------------------ccc----------------------
Confidence 99988888777776654322110 010
Q ss_pred CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060 422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW 501 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~ 501 (579)
...+.|+ .+.......+....++....+. ..++.+..|++.+|+..++.+...+
T Consensus 344 -----------------------~~~gi~~--~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~ 397 (468)
T TIGR00788 344 -----------------------LAFGISD--EVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILH 397 (468)
T ss_pred -----------------------cccCCCC--eeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHH
Confidence 0000111 1111222223333333333333 5888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc-----cchhhHHHHHHHHHHHHHh--hhhccC
Q 008060 502 ISNLIVAQSFLSLTQAIG-----TSWTFLIFGVISVAALLFV--LIFVPE 544 (579)
Q Consensus 502 ~g~~i~~~~~g~~~~~~g-----~~~~~~~~~~~~~~~~~~~--~~~~~~ 544 (579)
+|..+++.+.+.+.+..| ++..+....+..+..++.. ..++|+
T Consensus 398 lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 398 LGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999888 6555554444333332221 235776
No 104
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.85 E-value=1.4e-18 Score=174.45 Aligned_cols=400 Identities=14% Similarity=0.089 Sum_probs=279.5
Q ss_pred cCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH
Q 008060 24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL 103 (579)
Q Consensus 24 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~ 103 (579)
+-.++||.+++.+++..+.+++.+..++++.......|+ +.... -|+..+|++.+....+++-|+.|++|-|..++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~---~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA---DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH---HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 467889999999999999999999999999888888888 44445 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc------hhh--HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH
Q 008060 104 VADFLFFVGAVIMAAAP------NPG--ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY 175 (579)
Q Consensus 104 ~~~~l~~i~~ll~~~a~------~~~--~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~ 175 (579)
++..+.++|..+-..+. .++ ....+..+.+.++-........+-.-||++++|+.+..+-.++..+|.++|.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 99999999999876653 345 6668888888888877777778888899999999999999999999999999
Q ss_pred HHHHHhccCc----C-cchh--HHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhh
Q 008060 176 LINLAFTRAP----G-TWRW--MLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKE 247 (579)
Q Consensus 176 ~l~~~l~~~~----~-~Wr~--~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (579)
++...++... + .|.- .|+..+.++++.+++ .+..++.|+.-.+..
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s--------------------------- 246 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS--------------------------- 246 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh---------------------------
Confidence 9999988764 1 3544 355444444444443 333444332110000
Q ss_pred hhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 008060 248 SVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAA 327 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
...+.+.....+.+++++++++.... ..+......++...+.+...+...+. +...+|+......+++++
T Consensus 247 ----~~~~~~~~f~~si~~~~~n~~F~il~-----~~ygi~~g~F~~l~~~l~~~l~~sgY-~~~~aG~ig~l~iv~Gml 316 (480)
T KOG2563|consen 247 ----QAALQDASFPKSIKSCFKNRQFIILA-----ICYGIGLGLFNSLSTLLNLALCPSGY-EGVFAGYIGALMIVAGML 316 (480)
T ss_pred ----HhhhhcCcHHHHHHHHHcCccHHHHH-----HHHhhhHHHHHHHHHHhhhccccccC-CccccchhHHHHHHHHHH
Confidence 00011223467888999998884322 22222233344444444333334444 336788999999999999
Q ss_pred HHHHHHHHHhhcCCchhh-HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccC
Q 008060 328 GSIVSIYFIDRTGRKKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKA 406 (579)
Q Consensus 328 ~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (579)
++.+.|.+.||.++-+.. .+......++.+.+........
T Consensus 317 ga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~--------------------------------------- 357 (480)
T KOG2563|consen 317 GALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG--------------------------------------- 357 (480)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC---------------------------------------
Confidence 999999999998765443 3333333333222222111100
Q ss_pred CCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccc
Q 008060 407 SSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPL 486 (579)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 486 (579)
.. +.+...+...+++..+..|+-.-+..|..-|
T Consensus 358 ----------------------------------------------~~-viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP 390 (480)
T KOG2563|consen 358 ----------------------------------------------DS-VIVFTTCGLLGFFGTGYLPIGFELGVETTYP 390 (480)
T ss_pred ----------------------------------------------ce-EehhhhHHHHHHhhcCCCCcceeeeeeeccc
Confidence 01 1244445555666777778888888887555
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhhHHHHHHHHHHHHHhhhhccCCCCCCh
Q 008060 487 RFRGVCGGIAATANWISNLIVAQSFLSLTQAIG----TSWTFLIFGVISVAALLFVLIFVPETKGLPI 550 (579)
Q Consensus 487 ~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (579)
..-++..|+.+..+++-+.+-..+.+...+..+ +...-+.....+++..++..++.|+.++++.
T Consensus 391 v~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 391 VAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred cCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 666899999999999999999999999888777 5555566677777777776666665555443
No 105
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.83 E-value=3.2e-17 Score=173.78 Aligned_cols=360 Identities=21% Similarity=0.175 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH-HHHHHHHHHHHHHHhc-c-hhhHHHHHHHHHHhhchhhhhhHhHh
Q 008060 70 LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMAAA-P-NPGALITGRVFVGLGVGMASMTSPLY 146 (579)
Q Consensus 70 ~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~-~~~~l~~i~~ll~~~a-~-~~~~ll~~R~l~Gig~g~~~~~~~~~ 146 (579)
+.++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.+..+. + +++...+.-++.-++.+...+.-.++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999998776655 4445555566665553 3 45555555566667888888888999
Q ss_pred hhhcCCcccc--------------------------hhhhhhhHHHHHHHHHHHHHHHHHhccCcC-------cchhHHH
Q 008060 147 ISEASPAKIR--------------------------GALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRWMLG 193 (579)
Q Consensus 147 l~e~~p~~~R--------------------------~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-------~Wr~~f~ 193 (579)
+.|..+++++ ++..+.-.....+|..+..++.-.+....+ +-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999998888 899999888888888887777665543322 2488888
Q ss_pred HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060 194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (579)
Q Consensus 194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
+.++.-++..+. ++++||.|+....+....-..... ++-...+++..|.|.
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------~~l~~t~k~~~~~~~ 282 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF----------------------------KRLWRTFKEIRKLRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH----------------------------HHHHHHHHHHHhChH
Confidence 888765555544 677888764200000000000000 001223334444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhhHHHHH
Q 008060 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK--KLLVISLS 350 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~ 350 (579)
..+. ++..++..-+..++......|.++..+.+..+...+.....+.+++|++++|++.||+|.| +++..+..
T Consensus 283 ~~~f-----Lia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 283 LFLF-----LIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 4332 2334444557788888888888866666777778888888999999999999999999998 77766665
Q ss_pred HHHH-HHHHHH-HHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060 351 GVIL-SLGVLS-AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI 428 (579)
Q Consensus 351 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (579)
+..+ +...+. ........ .+
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~--------------------------~~-------------------------------- 379 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGL--------------------------KS-------------------------------- 379 (477)
T ss_pred HHHHHHHHHHHHhhhcccCc--------------------------cc--------------------------------
Confidence 5522 222222 11110000 01
Q ss_pred cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060 429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA 508 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~ 508 (579)
.|. ...+.++.+.+..+..+..-++.+|+.|++..+..+|+....+...+.+||
T Consensus 380 -------------------------~~~-f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 380 -------------------------PWE-FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred -------------------------HHH-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 122 444444455555555677789999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhccCCCC
Q 008060 509 QSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVPETKG 547 (579)
Q Consensus 509 ~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (579)
.++|.+.+.+| .+..+....++.++++++. ..++..|+
T Consensus 434 ll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 434 LLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 99999999988 8888988888888888875 44554443
No 106
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.83 E-value=1.7e-17 Score=175.48 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=128.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHH
Q 008060 35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVG 112 (579)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~ 112 (579)
.+++..+...+....+...+|. +.+++|.++.+. +.+.+.+.....++.+++|+++||+ ||||+++++.++.+++
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a---~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA---YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 3334444444444445455554 567789988888 8899999999999999999999999 9999999999999999
Q ss_pred HHHHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc--cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060 113 AVIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 113 ~ll~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~--~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
.++.+... +...+.+...+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+..+ ||
T Consensus 90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~ 168 (493)
T PRK15462 90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WA 168 (493)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hH
Confidence 87776543 2233444444555666777777788999999875 68999999999999999999999999988777 99
Q ss_pred hHHHHhhHHHHHHHHH
Q 008060 190 WMLGVAGIPALLQFIL 205 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~ 205 (579)
+.|.+.++..++.++.
T Consensus 169 ~~F~iaaigm~l~li~ 184 (493)
T PRK15462 169 MGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999876544433333
No 107
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.83 E-value=3.5e-18 Score=181.27 Aligned_cols=338 Identities=19% Similarity=0.208 Sum_probs=245.5
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHHH-HHHHHHHHHHHHHHHhc-c-----
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSI-LVADFLFFVGAVIMAAA-P----- 120 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~vl-~~~~~l~~i~~ll~~~a-~----- 120 (579)
...+.+.+.+|+++... |.+..+..+..++..|+.|.++| |+||||.. ++|....+++.++.... +
T Consensus 23 ~~~~f~~~~~gl~~~~~---g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALA---GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 45566778889988777 99999999999999999999999 89987765 46888888888877765 4
Q ss_pred --hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC------cchhH
Q 008060 121 --NPGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWM 191 (579)
Q Consensus 121 --~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~------~Wr~~ 191 (579)
....+.+..++..++......+-.++..|..+ +++|.+..+....+..+|..+...+.+.+.+..+ +|++.
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~ 179 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM 179 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence 23345667777789989888888999999998 5789999999988888888777766666654332 49999
Q ss_pred HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060 192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT 270 (579)
Q Consensus 192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (579)
.++.+++.++..++ .+..+|.++ +.+.++++..-+...++++++
T Consensus 180 ~~v~~iv~~v~~~i~~~~~ke~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~n 224 (428)
T PF13347_consen 180 ALVLAIVGLVFFLITFFFVKERSV-----------------------------------EVTEQEKKISLRDSLRSLFRN 224 (428)
T ss_pred HHHHHHHHHHHhhhhhheeeeccc-----------------------------------cccccccccccccchhhhccc
Confidence 98888887776666 555666211 000112222334567788888
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060 271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS 350 (579)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 350 (579)
|.++......++. ..+........+.|.+...+.+ ...+.......+..+++.++.++++||+|+|+.+..+..
T Consensus 225 r~~~~l~~~~~~~-----~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~ 298 (428)
T PF13347_consen 225 RPFRILLLAFFLQ-----WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL 298 (428)
T ss_pred chHHHHHHHHHHH-----HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence 8876544443332 2334444555566666655544 445566667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060 351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN 430 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (579)
+.+++.+.+.+....
T Consensus 299 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 313 (428)
T PF13347_consen 299 LAALGFLLLFFLGPG----------------------------------------------------------------- 313 (428)
T ss_pred HHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence 988888877766420
Q ss_pred cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccchhhhHHHHHHHHHH
Q 008060 431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRGVCGGIAATANWIS 503 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gi~~~~~~~g 503 (579)
..+..++...+.+.+.+ ......+++.+|+.+ .+..|..+|+.++...++
T Consensus 314 ----------------------~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 314 ----------------------SPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred ----------------------hHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 12333444444444443 334677788888875 345699999999999999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 008060 504 NLIVAQSFLSLTQAIGTS 521 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~ 521 (579)
..+++.+.+.+.+..|+.
T Consensus 371 ~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 999999999998877654
No 108
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.82 E-value=8.9e-19 Score=179.01 Aligned_cols=378 Identities=17% Similarity=0.134 Sum_probs=235.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH---HHH
Q 008060 38 IGGLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF---VGA 113 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~---i~~ 113 (579)
+..+...+..+..-|..+...+ +.|++.++. |.+.++..+...+.+++.|.++||.|.||-++..+.+.. ...
T Consensus 14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i---G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pf 90 (412)
T PF01306_consen 14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI---GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPF 90 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCHHHH---HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 3444445556666677776554 589999999 999999999999999999999999997776554332221 122
Q ss_pred HHHHhc----chhh-HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060 114 VIMAAA----PNPG-ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW 188 (579)
Q Consensus 114 ll~~~a----~~~~-~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W 188 (579)
+...+. .|++ ..+++-...|+......|..-+++.++. ++.+.-.|-..+..++|.+++..++|.+.+. +-
T Consensus 91 f~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p 166 (412)
T PF01306_consen 91 FIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NP 166 (412)
T ss_dssp HHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--Cc
Confidence 222222 2322 2233333344444445555555554443 2336667778889999999999999999875 35
Q ss_pred hhHHHHhhHHHHHHHHHHHhc-cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060 189 RWMLGVAGIPALLQFILMLLL-PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL 267 (579)
Q Consensus 189 r~~f~i~~i~~l~~~i~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
+..|++....+++..++.+.. |+.++..... +....++++.+.++..++
T Consensus 167 ~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~l 216 (412)
T PF01306_consen 167 NIIFWIASAAAIILLLLLLLLKPDVPPQAEVA------------------------------DALGAKKDKVSLKDVLSL 216 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---SSSSS-SS------------------------------TTSSS------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh------------------------------cccccCCCCCcHHHHHHH
Confidence 677887666555555443333 3332100000 000001111223456788
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060 268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL 344 (579)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 344 (579)
+|+|++|...+...+... .+...-...|.|....... ++...+++.....+..++...+..++.+|+|.|+.
T Consensus 217 ~k~~~fw~~~l~v~g~~~-----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~ 291 (412)
T PF01306_consen 217 FKMRNFWFFVLFVIGVAA-----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL 291 (412)
T ss_dssp TTSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hcchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence 999999875554443322 2333333345555543332 33556777788888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060 345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (579)
++++..++.+-.....+..+
T Consensus 292 Lllag~i~~iRi~~~~~~~~------------------------------------------------------------ 311 (412)
T PF01306_consen 292 LLLAGVIMAIRIIGSGFATN------------------------------------------------------------ 311 (412)
T ss_dssp HHHHHHHHHHHHHHHHT--S------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhcc------------------------------------------------------------
Confidence 99998888887776665432
Q ss_pred cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH-HHHHHHH
Q 008060 425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA-ATANWIS 503 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~-~~~~~~g 503 (579)
.|.....=.+-..-+..... ...-++++.+|+|..++...+. +...++|
T Consensus 312 -----------------------------~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~ 361 (412)
T PF01306_consen 312 -----------------------------PWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIG 361 (412)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 22222222222222222211 2246888999999988988885 7888999
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCC
Q 008060 504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKG 547 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (579)
.++.+.+.|.++|+.|++.+|++++.+.++..++..+.+++.++
T Consensus 362 ~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 362 IIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999999999999999999999999999888888777765544
No 109
>PRK09848 glucuronide transporter; Provisional
Probab=99.82 E-value=9.6e-18 Score=179.03 Aligned_cols=349 Identities=13% Similarity=0.058 Sum_probs=208.7
Q ss_pred HHHHHhhhhhhhhhh-hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc----cchHHH-HHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF----GRRTSI-LVADFLFFV 111 (579)
Q Consensus 38 l~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~----Grr~vl-~~~~~l~~i 111 (579)
++.+..........+ +.+++.+.+|++..+. |.+.+...+..++..++.|+++||. ||||.. .++.+...+
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAA---GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 333344444433333 3346777789988777 9999999999999999999999996 777755 555554444
Q ss_pred HHHHH-Hhc----c--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHH-----HHHHHHHHHH
Q 008060 112 GAVIM-AAA----P--NPGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLIT-----SGQFLSYLIN 178 (579)
Q Consensus 112 ~~ll~-~~a----~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~-----iG~~ig~~l~ 178 (579)
..++. ... . ..+.+++..++.+++.+...++..++..+... +++|.+..++...+.+ ++..++|.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~ 171 (448)
T PRK09848 92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK 171 (448)
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 211 1 12334445567788888888777777777664 4678887766554433 4555566665
Q ss_pred HHhccCcC-cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhh
Q 008060 179 LAFTRAPG-TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEE 256 (579)
Q Consensus 179 ~~l~~~~~-~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (579)
+....... .|.....+.++++++..+. ....||+++. +.+
T Consensus 172 ~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~--------------------------------------~~~ 213 (448)
T PRK09848 172 NSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR--------------------------------------IVA 213 (448)
T ss_pred HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC--------------------------------------Ccc
Confidence 54321111 1221112222222222222 2333444210 000
Q ss_pred ccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 257 GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336 (579)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 336 (579)
++..+..+++++|+|.++...+..++. +.+......+.|.|+++..+.+....++......++.+++.++.+++.
T Consensus 214 ~~~~~~~~~~l~~n~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 288 (448)
T PRK09848 214 QPSLKISLQTLKRNRPLFMLCIGALCV-----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMV 288 (448)
T ss_pred CCCHHHHHHHHhCCchHHHHHHHHHHH-----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233467788888886544443332 223344445567777766555555555555555566788999999999
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccC
Q 008060 337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS 416 (579)
Q Consensus 337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (579)
||+++|+.+..+..+.+++.+.+.....
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~~~~~~---------------------------------------------------- 316 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLFFWVSV---------------------------------------------------- 316 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHcCc----------------------------------------------------
Confidence 9999999999888877777665543210
Q ss_pred CCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccc-------ccc
Q 008060 417 HSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPL-------RFR 489 (579)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~ 489 (579)
...|...+...+...+.+.. .+..+++.+|..|. +.+
T Consensus 317 -----------------------------------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~ 360 (448)
T PRK09848 317 -----------------------------------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIE 360 (448)
T ss_pred -----------------------------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccch
Confidence 01222223233333332222 34455676776654 356
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008060 490 GVCGGIAATANWISNLIVAQSFLSLTQAIGT 520 (579)
Q Consensus 490 g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~ 520 (579)
|..+|+.++...+|.++++.+.+.+.+..||
T Consensus 361 G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 361 GLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999887776
No 110
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.82 E-value=6.5e-20 Score=171.77 Aligned_cols=384 Identities=16% Similarity=0.109 Sum_probs=256.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHH
Q 008060 27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVA 105 (579)
Q Consensus 27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~ 105 (579)
.+|.+.++..|+..+..++.....+.+..+...+.++...+. .++.++|.....+.++++|++.|| +|.|..-++-
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf---tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF---TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee---eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 457788888999999999999999999899999999988888 889999999999999999999996 5877766666
Q ss_pred HHHHHHHHHHHHh---cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 106 DFLFFVGAVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 106 ~~l~~i~~ll~~~---a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
+....+|.++++. .+.+|+++++||+.|+|.-...++...+..-||..++.+.++|+.....-+|..+-..+.+++.
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 6666677776654 6889999999999999988888888999999999999999999999999999998888887776
Q ss_pred cCcCcc-----hhHH---HHhh-HHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhH
Q 008060 183 RAPGTW-----RWML---GVAG-IPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEI 253 (579)
Q Consensus 183 ~~~~~W-----r~~f---~i~~-i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
+..+.. +... +..+ ..+....+....+ .|. .+.+++.+.+.. .
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~~-----D~rAerilh~e~------------------g- 248 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GLS-----DDRAERILHLEE------------------G- 248 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hhh-----hhHHHHHHhhhc------------------C-
Confidence 643200 0000 0000 0111111110000 000 011111111000 0
Q ss_pred HhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008060 254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI 333 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (579)
...+..+..-..-+ .|.+|...++++ +..+.+..+....|.++++..+.++..++-+.....+.+.+.++++|
T Consensus 249 -~~Ge~pkLtdv~~f-~ppfw~~~iicv-----~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg 321 (459)
T KOG4686|consen 249 -FLGEEPKLTDVNTF-YPPFWVLVIICV-----LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFG 321 (459)
T ss_pred -cccCCccccccccc-CccHHHHHHHHH-----HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHH
Confidence 00000011111112 234444444333 33445677777888888877666777777666666777899999999
Q ss_pred HHHhhcCCchhhHHHH-HHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCC
Q 008060 334 YFIDRTGRKKLLVISL-SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG 412 (579)
Q Consensus 334 ~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (579)
.++||.|++-.++.+. +...++-..+.+...+
T Consensus 322 ~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls----------------------------------------------- 354 (459)
T KOG4686|consen 322 AISDKYGFNLWWVASACILTLLGHSGLFFTFLS----------------------------------------------- 354 (459)
T ss_pred HhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc-----------------------------------------------
Confidence 9999999987766443 3333443333333211
Q ss_pred cccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhh
Q 008060 413 FCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVC 492 (579)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 492 (579)
+ .+.+.+.+..++.- ....|.+++.+.|.+..|++
T Consensus 355 -----------------------------------------P---y~~m~~lGLsysll-AcslWP~va~~vpE~qLGTa 389 (459)
T KOG4686|consen 355 -----------------------------------------P---YTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTA 389 (459)
T ss_pred -----------------------------------------H---HHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcch
Confidence 1 23333333333221 23357788889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-c---chhhHHHHHHHHHHHHHhhh
Q 008060 493 GGIAATANWISNLIVAQSFLSLTQAIG-T---SWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 493 ~gi~~~~~~~g~~i~~~~~g~~~~~~g-~---~~~~~~~~~~~~~~~~~~~~ 540 (579)
.|.++...++|-++.|++.|.+.|.-| + ..-|++.+.+++....+.+.
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998766 3 33455555566655555443
No 111
>PRK11462 putative transporter; Provisional
Probab=99.81 E-value=4.2e-17 Score=174.12 Aligned_cols=255 Identities=13% Similarity=0.051 Sum_probs=164.7
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc----ccchHHHH-HHHHHHHHHHHHHHhcch------
Q 008060 53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTSIL-VADFLFFVGAVIMAAAPN------ 121 (579)
Q Consensus 53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr----~Grr~vl~-~~~~l~~i~~ll~~~a~~------ 121 (579)
+...+.+.+|++.... |.+..+.-+.-++..|+.|.++|| +||||..+ ++.+..+++.+++-..++
T Consensus 32 l~~fyt~~~Gl~~~~~---g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~ 108 (460)
T PRK11462 32 MMFFYTDIFGIPAGFV---GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK 108 (460)
T ss_pred HHHHHHHhhCCCHHHH---HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence 4455678889988777 999999999999999999999995 79876654 576777777766654442
Q ss_pred hhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC------cchhHHHH
Q 008060 122 PGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWMLGV 194 (579)
Q Consensus 122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~------~Wr~~f~i 194 (579)
+..+++.-.+..++......+-.++..|..+ +++|++..++...+..+|..+++.+...+....+ +|+....+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i 188 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAV 188 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 3445566667788888888888889999987 7899999999999999988888777655443221 37777666
Q ss_pred hhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchh
Q 008060 195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV 273 (579)
Q Consensus 195 ~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (579)
.+++.++..++ +...+|.++. ++++...+...+..+++|.+
T Consensus 189 ~~ii~~i~~~i~~~~~kE~~~~--------------------------------------~~~~~~~~~~l~~~~~Nk~~ 230 (460)
T PRK11462 189 LSVVAFMMLAFCFFTTKERVEA--------------------------------------PPTTTSMREDLRDIWQNDQW 230 (460)
T ss_pred HHHHHHHHHHHHHhcceeccCC--------------------------------------CccCCCHHHHHHHHhCChHH
Confidence 66665555444 3334443210 00001123345667777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060 274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI 353 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 353 (579)
+......+.. .............|.+...+. ....+.+.....+.++++.++++++.||+++|+.+..+..+..
T Consensus 231 ~~l~~~~~~~-----~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~ 304 (460)
T PRK11462 231 RIVGLLTIFN-----ILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLA 304 (460)
T ss_pred HHHHHHHHHH-----HHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 5443322211 111222222222333333332 3333445566677788999999999999999988765544433
Q ss_pred H
Q 008060 354 L 354 (579)
Q Consensus 354 ~ 354 (579)
+
T Consensus 305 ~ 305 (460)
T PRK11462 305 V 305 (460)
T ss_pred H
Confidence 3
No 112
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.80 E-value=5.4e-18 Score=175.13 Aligned_cols=416 Identities=14% Similarity=0.172 Sum_probs=260.5
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccc-hHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILV 104 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Gr-r~vl~~ 104 (579)
++.+|+.+.+..+..++.....+++.+..-+..++++.+.+... .|++.++..++.++++++.|+.+.|.+. |+.++.
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f-fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~ 107 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF-FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV 107 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch-hhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence 45577888888888899999888887777666677554333221 2999999999999999999999999997 888899
Q ss_pred HHHHHHHHHHHH-Hh---cc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHH
Q 008060 105 ADFLFFVGAVIM-AA---AP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179 (579)
Q Consensus 105 ~~~l~~i~~ll~-~~---a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~ 179 (579)
|.++..++.++. +. .+ ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.++.
T Consensus 108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 999999999988 33 23 68899999999999988 55667789999988899999999999989999999998887
Q ss_pred HhccCc--C----------cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhh
Q 008060 180 AFTRAP--G----------TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK 246 (579)
Q Consensus 180 ~l~~~~--~----------~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (579)
.+.... | .+..+-|+.+++.++.++. .++++|.++....+..+++
T Consensus 187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~---------------------- 244 (488)
T KOG2325|consen 187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV---------------------- 244 (488)
T ss_pred HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc----------------------
Confidence 765432 1 1234556777777776666 5667777541111000000
Q ss_pred hhhhhhHHhhccchhhhHHHhhhcchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 008060 247 ESVDKEIEEEGSSEKINLVKLLKTRTVRRG-LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (579)
.+...-.+..+.++.-+. .+..+...+...+.....-....+..+...+....+..........+.+
T Consensus 245 ------------~~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g 312 (488)
T KOG2325|consen 245 ------------EEEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISG 312 (488)
T ss_pred ------------hhhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHH
Confidence 000111111222222222 2222222222222222223334455556667766666665555555555
Q ss_pred HHHHHHHHH---HH-hhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccc
Q 008060 326 AAGSIVSIY---FI-DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCM 401 (579)
Q Consensus 326 ~~~~~~~g~---l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (579)
++...+... .. .++.+|+.+..++.....+..+.........
T Consensus 313 ~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s---------------------------------- 358 (488)
T KOG2325|consen 313 ILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYS---------------------------------- 358 (488)
T ss_pred HHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccc----------------------------------
Confidence 554443322 22 2223455555554433333332222111110
Q ss_pred ccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCc---ccccce
Q 008060 402 KCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGM---GTAPWI 478 (579)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 478 (579)
.|++++. ..-.-+|+.--+||.+..+.-. ...++.+...++.++ .....+
T Consensus 359 --------------~pv~~~~-~~~~~~~~~~y~wc~~~~~v~~------------~~~l~~~i~~~g~~~P~~~~~~~t 411 (488)
T KOG2325|consen 359 --------------GPVQPYN-TTYAGCDFEEYSWCDTTTAVPL------------ILYLISFIVVFGIAFPFISTALDT 411 (488)
T ss_pred --------------ccccccc-ccccCcCcccchhhccCcccCh------------hhheeehhheeccccccccchHHH
Confidence 1222222 2234567777788887755522 222222222222222 233457
Q ss_pred eeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060 479 VNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 479 ~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
.-+|+..++.+++..|+....+.++..++|.+...+....|+++.+.+.++..++...+.
T Consensus 412 lySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 412 LYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred HHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999877777666665555443
No 113
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=4.2e-17 Score=175.02 Aligned_cols=454 Identities=15% Similarity=0.172 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH
Q 008060 31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF 110 (579)
Q Consensus 31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~ 110 (579)
..+.++++..+..++....+...+..+.+.|+++..+. |++.+.+-++..+...+..+..-|.-|-+.+-+|+++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s---G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS---GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG 173 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc---eeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence 45566777788888888888889999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--------------------c-----------------------------h---hhHHHHHHHHHHhhchh
Q 008060 111 VGAVIMAAA--------------------P-----------------------------N---PGALITGRVFVGLGVGM 138 (579)
Q Consensus 111 i~~ll~~~a--------------------~-----------------------------~---~~~ll~~R~l~Gig~g~ 138 (579)
++++++++- + + +..++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999998741 0 0 23567788999999999
Q ss_pred hhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc------------------CcchhHHHHhhHHHH
Q 008060 139 ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------------------GTWRWMLGVAGIPAL 200 (579)
Q Consensus 139 ~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------------------~~Wr~~f~i~~i~~l 200 (579)
.++...+|+-|...+++-+..+|+..+...+|.++|.++++++...+ |-|..-|++.+.+.+
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876432 136777888888888
Q ss_pred HHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHH
Q 008060 201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG 280 (579)
Q Consensus 201 ~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (579)
+..+.++++|+..+.-.++ .+.++ . +..+.+. . ....+......-++-+...++++++|.+..
T Consensus 334 ~~a~p~f~fPk~lp~~~~~---~~~~~-~-~~~k~~~--~-----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~----- 396 (735)
T KOG3626|consen 334 FSAVPLFFFPKELPKSQKR---KRARD-L-HVLKTES--G-----GAKSDKTFGKKIKDFPKSIKRLLSNPIFML----- 396 (735)
T ss_pred HHHHHHHhCcccCcccccc---chhhh-h-ccccccc--c-----cccCCcchhhhHHHHHHHHHHHhcCchHHH-----
Confidence 8888888888763311111 00000 0 0000000 0 000000000111223556777888887643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHHH
Q 008060 281 VGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS-LVTSGLNAAGSIVSIYFIDRTG--RKKLLVISLSGVILSLG 357 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~ 357 (579)
..+...+....+..+.+|+|-|++.....++..+..++ .+...+..+|.+++|++++|+. .|......++...++++
T Consensus 397 ~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~ 476 (735)
T KOG3626|consen 397 VVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL 476 (735)
T ss_pred HHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence 33444555667888899999999987777777776666 4444556788999999999975 34554454544444444
Q ss_pred HHHHHhccc---CC-----CCCccccccccccCCCCCCCCcc--ccccccccccccccCCCC-------CCCcccCC---
Q 008060 358 VLSAVFHET---TS-----HSPMVSAVETSHFSNLTCPDYSS--AATADRWDCMKCLKASSP-------DCGFCASH--- 417 (579)
Q Consensus 358 ~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~--- 417 (579)
.+....... .. .....+..++.|.+ ++.+ =|+ .=..++|+-| |++.+-. -|......
T Consensus 477 ~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~-~~s~-Cn~~C~C~~~~~~PV-Cg~~G~tY~SpChAGC~~~~~~~~~ 553 (735)
T KOG3626|consen 477 FYSLLFFIGCESSPVAGVTNSYEGSPAFTSHEN-PFSS-CNSDCSCDTSEYEPV-CGENGITYFSPCHAGCTESSGTSDG 553 (735)
T ss_pred HHHHHHEecCCCCcccceecCCCCCCccccCCC-chhh-hhcCCCCCCcCcCcc-cCCCCCEEeChhhhCCcccccCCCC
Confidence 432221111 00 00000111111111 0000 000 0011233211 1111110 11111111
Q ss_pred CCCCCCccccc----cCccccc-ccccc-cccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchh
Q 008060 418 SNKLFPGACLI----SNSTVKD-LCHDE-SREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV 491 (579)
Q Consensus 418 ~~~~~~~~~~~----~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 491 (579)
.+.+.-|.|+= .++.+|. .|+.+ +++-+ ..++.+++..+....+ .+....++-..+|++.|..
T Consensus 554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~----------~Fl~~~~~~sf~~~~~-~~p~~~i~LR~V~~e~ks~ 622 (735)
T KOG3626|consen 554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFL----------IFLALFAIGSFIGALG-AVPGMLIVLRCVPPEEKSF 622 (735)
T ss_pred ceeeccccccccccCCCceeecCCCCCCcchhhH----------HHHHHHHHHHHHHHhc-cCcceEEEEEccCchhchh
Confidence 12233455553 4444444 55555 44322 2233333333333333 2344578888999999999
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 008060 492 CGGIAATANW-ISNLIVAQSFLSLTQAI 518 (579)
Q Consensus 492 ~~gi~~~~~~-~g~~i~~~~~g~~~~~~ 518 (579)
++|+..++.+ +|.+-+|+++|+++|..
T Consensus 623 AlG~~~~~irllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 623 ALGFQWMLIRLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred hhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence 9999977655 67778899999999863
No 114
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.77 E-value=5.4e-17 Score=163.96 Aligned_cols=277 Identities=12% Similarity=0.067 Sum_probs=190.9
Q ss_pred hcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc------------
Q 008060 118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------------ 185 (579)
Q Consensus 118 ~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------------ 185 (579)
...+|+.+++.-|+.|.|.+...+....++++..+++++++.+++.+..+++|..++|++++.+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999877321
Q ss_pred ---CcchhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccch
Q 008060 186 ---GTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE 260 (579)
Q Consensus 186 ---~~Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (579)
.+||++|++.+.+.++..+.+.+. ||..+ +.++ +..+++
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~----------------------------~~~~~~-- 129 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA----------------------------RVSSGD-- 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc----------------------------cccccc--
Confidence 249999997776655555554444 43210 0000 000000
Q ss_pred hhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060 261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDR 338 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 338 (579)
..+.++.+++|.++.. .+..++..........|.+.|+++. .+.+...++........+.++|+++++++.||
T Consensus 130 ~~~~~~~~~~~~~~l~-----~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r 204 (310)
T TIGR01272 130 TTQKTSAFQFTHLVLG-----ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM 204 (310)
T ss_pred ccchhhHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111234555554432 2223333335667788899999754 34567778888888999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCC
Q 008060 339 TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS 418 (579)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (579)
+++|+.+..+..+..++.+++... +
T Consensus 205 ~g~~~~l~~~~~l~~~~~~l~~~~-~------------------------------------------------------ 229 (310)
T TIGR01272 205 ISQGRYLAFNAFLAVLLSIGAALT-H------------------------------------------------------ 229 (310)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHc-C------------------------------------------------------
Confidence 999998877776666655433321 1
Q ss_pred CCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHH
Q 008060 419 NKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAAT 498 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~ 498 (579)
++...+.+.+++ ++...+.|...+...+..|++ .+++.++. .
T Consensus 230 -----------------------------------~~~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~ 271 (310)
T TIGR01272 230 -----------------------------------GYVAMWFVLALG-LFNSIMFPTIFSLALNALGRH-TSQGSGIL-C 271 (310)
T ss_pred -----------------------------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-H
Confidence 111122222222 333334566566777777654 46677775 5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 008060 499 ANWISNLIVAQSFLSLTQAIGTSWTFLIFG 528 (579)
Q Consensus 499 ~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~ 528 (579)
.+.+|+++.|.+.|.+.|..|.+.+|++..
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 677999999999999999999888876433
No 115
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.1e-15 Score=157.87 Aligned_cols=339 Identities=18% Similarity=0.148 Sum_probs=237.7
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHH-HHHHHHHHHHHHHHHHhcch------
Q 008060 53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTS-ILVADFLFFVGAVIMAAAPN------ 121 (579)
Q Consensus 53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~v-l~~~~~l~~i~~ll~~~a~~------ 121 (579)
++-.+.+.+|++.... |.+..+.-+--++.-|+.|.++| |+||+|. ++.+.+..++...++-.+++
T Consensus 35 Ll~fYTdv~Gis~~~a---G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k 111 (467)
T COG2211 35 LLFFYTDVFGLSAALA---GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK 111 (467)
T ss_pred HHHHHhcccCCcHHHH---HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence 3345678889988887 98999999999999999999999 4787665 56687888888888877763
Q ss_pred hhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC------cchhHHHH
Q 008060 122 PGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWMLGV 194 (579)
Q Consensus 122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~------~Wr~~f~i 194 (579)
....++...+.+++......+-.++..|..+ ++||.+..++-..+.++|..+...+.+.+....+ +|+..-.+
T Consensus 112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~ 191 (467)
T COG2211 112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALV 191 (467)
T ss_pred hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 4556677788899999888888889999876 6889999999999999997776666655543221 47777777
Q ss_pred hhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchh
Q 008060 195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV 273 (579)
Q Consensus 195 ~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (579)
.++++++..+. ++-.+|.+... ...+...+.+-+.++...+++|.+
T Consensus 192 ~~vi~~i~~l~~~~~v~ER~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~Nrp~ 238 (467)
T COG2211 192 LGVIGVILLLFCFFNVKERVVET---------------------------------QPTKTGVKLKLKDSFLLIFKNRPL 238 (467)
T ss_pred HHHHHHHHHHHHHHHhhcccCcc---------------------------------ccCcccccccHHHHHHHHHccchH
Confidence 77766665555 44456653200 000000112223345567888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060 274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI 353 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 353 (579)
+...+..++. +.+.+........|.+...+.+.............+.+++.++..++++|+|+|+++.++.++.+
T Consensus 239 ~~~l~~~l~~-----~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~ 313 (467)
T COG2211 239 LLLLLMNLLL-----FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA 313 (467)
T ss_pred HHHHHHHHHH-----HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence 7655533332 23344444455556555555555556566666677677779999999999999999999999988
Q ss_pred HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060 354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV 433 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (579)
++.+++.+....
T Consensus 314 i~~~~~~f~~~~-------------------------------------------------------------------- 325 (467)
T COG2211 314 VGYLLLYFTPAG-------------------------------------------------------------------- 325 (467)
T ss_pred HHHHHHHhhcCc--------------------------------------------------------------------
Confidence 888888776410
Q ss_pred ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccc-------ccccchhhhHHHHHHHHHHHHH
Q 008060 434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIY-------PLRFRGVCGGIAATANWISNLI 506 (579)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~g~~~gi~~~~~~~g~~i 506 (579)
..++.++..++...+.+ ...+++|++++|.. ..|..|...|++.++..+|.++
T Consensus 326 -------------------~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al 385 (467)
T COG2211 326 -------------------SVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL 385 (467)
T ss_pred -------------------chHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 12222233233333332 33678899998875 3466699999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 008060 507 VAQSFLSLTQAIGT 520 (579)
Q Consensus 507 ~~~~~g~~~~~~g~ 520 (579)
+..+.|++.+..||
T Consensus 386 a~~~~g~~L~~~Gy 399 (467)
T COG2211 386 AGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999988775
No 116
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.72 E-value=1.1e-14 Score=145.94 Aligned_cols=354 Identities=16% Similarity=0.092 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH-HHHHHHHHHHHHHHhcch---hhHHHHHHHHHHhhchhhhhhHhH
Q 008060 70 LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMAAAPN---PGALITGRVFVGLGVGMASMTSPL 145 (579)
Q Consensus 70 ~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~-~~~~l~~i~~ll~~~a~~---~~~ll~~R~l~Gig~g~~~~~~~~ 145 (579)
+.+...++..+..++..|+.|.++|+.|+||..+ +...+..++..+..++++ ++..++...+..++.....+.-.+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 4488999999999999999999999999776654 455555556666666554 445556668888888888899999
Q ss_pred hhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh--cc---------------CcCcchhHHHHhhHHHHHHHHH-HH
Q 008060 146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF--TR---------------APGTWRWMLGVAGIPALLQFIL-ML 207 (579)
Q Consensus 146 ~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l--~~---------------~~~~Wr~~f~i~~i~~l~~~i~-~~ 207 (579)
++.+..++++-++..+.-.....+|..+.-++.... .. ....-|..+.+.++..++..+. ++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999998888888876666667766555443111 11 0113677888888766665555 55
Q ss_pred hccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHH
Q 008060 208 LLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQ 287 (579)
Q Consensus 208 ~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (579)
.+++.++-. ....+ ... ..-++-+.+++++.+++.+...++. .++
T Consensus 219 ~v~~~~~~~---~~~~~-------------------~l~--------~g~k~L~~t~k~i~~~~~i~~FLiA-----~~~ 263 (438)
T COG2270 219 NVHDAEKIS---SPPPT-------------------ALR--------NGFKELKSTFKEIRGRKNLVLFLIA-----RFF 263 (438)
T ss_pred ccccccccc---ccchH-------------------HHH--------HHHHHHHHHHHHHhcccchHHHHHH-----HHH
Confidence 555554200 00000 000 0001112345555555555433333 333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060 288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT 367 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
..-+.++.......|-....+.+..+..++.....+.+++|+++.|++.||+|.|+++..+.++..+..+...+....
T Consensus 264 ~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~-- 341 (438)
T COG2270 264 YIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE-- 341 (438)
T ss_pred HHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc--
Confidence 344667777777788775555567777888888899999999999999999999999888887776666555543220
Q ss_pred CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060 368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR 447 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
T Consensus 342 -------------------------------------------------------------------------------- 341 (438)
T COG2270 342 -------------------------------------------------------------------------------- 341 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHH
Q 008060 448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLI 526 (579)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~ 526 (579)
.....+.++.+.+..+.....-++..+++|+++.+..+|+.+..+..+.+++|..++.+.+.+| .+..+..
T Consensus 342 --------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~ 413 (438)
T COG2270 342 --------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS 413 (438)
T ss_pred --------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 1134444444455445555667899999999999999999999999999999999999999887 6667777
Q ss_pred HHHHHHHHHHHhhhhccCCCCCC
Q 008060 527 FGVISVAALLFVLIFVPETKGLP 549 (579)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~ 549 (579)
..++..++++.. ...|+.++++
T Consensus 414 i~vll~iGl~~L-~~v~~~~~~~ 435 (438)
T COG2270 414 IIVLLLIGLLLL-LRVKVPGRRE 435 (438)
T ss_pred HHHHHHhhHhhE-EeecCCCCcc
Confidence 777777777664 3455544443
No 117
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.68 E-value=2.4e-14 Score=146.61 Aligned_cols=173 Identities=20% Similarity=0.335 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhhhhhhhh-hhhhhhhhhhcc----cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVI-SGALLYIRDDFK----SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVAD 106 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~-~~~lp~i~~~~~----~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~ 106 (579)
+..++..-+...++..-+ +.+.-++..+++ .+++++ .-+.+.|..-.-+..+++|+++||+ |+|+.+++|.
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A---~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA---TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh---HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 334444455554444433 333445555665 887777 5566666655567789999999997 9999999999
Q ss_pred HHHHHHHHHHHhcc--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc--cchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 107 FLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 107 ~l~~i~~ll~~~a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~--~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
+++.+|.++.+.+. +...+.++-.+.++|.|..=+....+++|.+|++ +|...++++.++.++|+.++|++.+++.
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 99999999999984 7889999999999999999999999999999854 4788899999999999999999999999
Q ss_pred cCcCcchhHHHHhhHHHHHHHHHHHhc
Q 008060 183 RAPGTWRWMLGVAGIPALLQFILMLLL 209 (579)
Q Consensus 183 ~~~~~Wr~~f~i~~i~~l~~~i~~~~l 209 (579)
+..+ |+..|...++-..+.++.++..
T Consensus 180 ~~~g-~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 180 INYG-WHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HhhC-HHHHHHHHHHHHHHHHHHHHHc
Confidence 9988 9999998887655555554444
No 118
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.67 E-value=5e-18 Score=182.42 Aligned_cols=310 Identities=18% Similarity=0.184 Sum_probs=3.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
++.+++..+...+........++.+.+.|+++..+. |++.+.+-++..+..++..++.+|..|-|.+-+|.++++++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~---G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g 81 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS---GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG 81 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence 344555666667777888888999999999999999 99999999999999999999999988888889999999999
Q ss_pred HHHHHh--------------------------c------------------------chhhHHHHHHHHHHhhchhhhhh
Q 008060 113 AVIMAA--------------------------A------------------------PNPGALITGRVFVGLGVGMASMT 142 (579)
Q Consensus 113 ~ll~~~--------------------------a------------------------~~~~~ll~~R~l~Gig~g~~~~~ 142 (579)
++++++ . .-++.++++.++.|+|....++.
T Consensus 82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL 161 (539)
T PF03137_consen 82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL 161 (539)
T ss_dssp ----------------------------------------------------------------------SSS-------
T ss_pred HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence 998763 0 01466888999999999999999
Q ss_pred HhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc---------------------CcchhHHHHhhHHHHH
Q 008060 143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------------------GTWRWMLGVAGIPALL 201 (579)
Q Consensus 143 ~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~---------------------~~Wr~~f~i~~i~~l~ 201 (579)
..+|+-|..++++-+..+|+..+...+|.++|.++++.+...+ |.|-.-|++.+.+.++
T Consensus 162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998776431 1366667777777777
Q ss_pred HHHHHHhccCC-hhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhh-hhHHhhccchhhhHHHhhhcchhhhHHHH
Q 008060 202 QFILMLLLPES-PRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVD-KEIEEEGSSEKINLVKLLKTRTVRRGLIA 279 (579)
Q Consensus 202 ~~i~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (579)
..+.++++|+. |+... ..++.+...++.. +...+...+... +......++-....++++++|.+....+
T Consensus 242 ~aipl~~FPk~lp~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~l- 312 (539)
T PF03137_consen 242 SAIPLFFFPKKLPGTSE---RQEEKESSERKEE-----DSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLIL- 312 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCccCCCccc---ccchhhhhhcchh-----hhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHH-
Confidence 77777777765 32200 0000000000000 000000000000 0001112333556778888887744333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHH
Q 008060 280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSL-VTSGLNAAGSIVSIYFIDRTG--RKKLLVISLSGVILSL 356 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~ 356 (579)
...........+.+|.|-|++.....++..+.++.. +...++++|.+++|++.+|++ .|+.+....+...++.
T Consensus 313 ----a~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 313 ----AGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 333444567788889999998776666666665554 334467899999999999975 4455444444444444
Q ss_pred HH
Q 008060 357 GV 358 (579)
Q Consensus 357 ~~ 358 (579)
++
T Consensus 389 ~~ 390 (539)
T PF03137_consen 389 IL 390 (539)
T ss_dssp --
T ss_pred HH
Confidence 33
No 119
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.67 E-value=3e-15 Score=161.59 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=140.0
Q ss_pred hhhhhhhh-hhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH---HHhcchhhHH
Q 008060 50 ISGALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI---MAAAPNPGAL 125 (579)
Q Consensus 50 ~~~~lp~i-~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll---~~~a~~~~~l 125 (579)
....+|.+ .+++|.+..+. ++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...+
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHG---VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI 345 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 34455654 46678776665 77778888999999999999999999999988877654433322 2234567788
Q ss_pred HHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
+++|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+..+++..+++++.++.
T Consensus 346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 88999999887777777778889999999999999975444556667888888888776555888877777777777777
Q ss_pred HHhccCChhHHHhc-----CCHHHHHHHHHhhc
Q 008060 206 MLLLPESPRWLYRK-----GREEEAQAILRKVY 233 (579)
Q Consensus 206 ~~~lpesp~~l~~~-----~~~~~~~~~~~~~~ 233 (579)
.+++||+|+|+.++ ++.+|+.+.+++++
T Consensus 426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 426 GVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 77789999988754 88899999888876
No 120
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.60 E-value=2.1e-12 Score=130.05 Aligned_cols=333 Identities=15% Similarity=0.065 Sum_probs=220.4
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-----chHHHHH-HHHHHHHHHHHHHhc-----c----
Q 008060 56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILV-ADFLFFVGAVIMAAA-----P---- 120 (579)
Q Consensus 56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-----rr~vl~~-~~~l~~i~~ll~~~a-----~---- 120 (579)
-+..|+++...-. +.+.++..+.. ...+.+|+.||+.+ ||..+++ |..+...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv---~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~ 80 (403)
T PF03209_consen 5 VMIVELGVPAWLV---ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ 80 (403)
T ss_pred hHHHHhccHHHHH---HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3567888755444 77888777755 45899999999999 8877664 666666655555432 2
Q ss_pred ---h--h--hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060 121 ---N--P--GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG 193 (579)
Q Consensus 121 ---~--~--~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~ 193 (579)
+ . ....+...+.|+|.+.......++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+..-|..-.
T Consensus 81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 2 2 23445668889999999999999999999999999999999999999999999999999887664444333
Q ss_pred HhhHH--HHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060 194 VAGIP--ALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271 (579)
Q Consensus 194 i~~i~--~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (579)
+.+.. .+...++..+=.|.+. .... ...++++......+++...+|
T Consensus 161 ~~~~a~i~~~l~~ia~wg~E~r~-~~~~-------------------------------~~~~~~~~~f~~a~~~~~~~~ 208 (403)
T PF03209_consen 161 IQGVALIALLLNLIALWGQEPRR-SRRA-------------------------------AAAERPRPPFREAWRQVWASP 208 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC-cccc-------------------------------cCCCCCCccHHHHHHHHHhCC
Confidence 33322 2222222222233211 0000 001122223345677778888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhHHHHH
Q 008060 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID-RTGRKKLLVISLS 350 (579)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~ 350 (579)
+.++..+..+... .+++.--..+..|-.+..+.+..+..-+......+.++|....|++.. |.++++...+++.
T Consensus 209 ~a~~f~~fl~l~t-----~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~ 283 (403)
T PF03209_consen 209 QARRFFVFLFLGT-----LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL 283 (403)
T ss_pred ChhHHHHHHHHHH-----HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 8776444332221 123333333444545566667788888888899999999999998877 5777788788988
Q ss_pred HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060 351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN 430 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (579)
..++++.++.......
T Consensus 284 ~~~~~f~lii~a~~~~---------------------------------------------------------------- 299 (403)
T PF03209_consen 284 LGALAFALIILAGPLG---------------------------------------------------------------- 299 (403)
T ss_pred HHHHHHHHHHHHHhcc----------------------------------------------------------------
Confidence 8888888777654321
Q ss_pred cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc-ccceeeccccccccchhhhHHHHHHHHHHHHHHHH
Q 008060 431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT-APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQ 509 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~ 509 (579)
..|+......++ +++.|... ...+...++.+++..|..+|....+..++..++..
T Consensus 300 ----------------------~~~~~~~~~~l~--G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 300 ----------------------SPWLFRPGVFLL--GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred ----------------------cchHHHHHHHHH--HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 133333444333 33334332 22355567777788899999999999999999998
Q ss_pred HHHHHHHh
Q 008060 510 SFLSLTQA 517 (579)
Q Consensus 510 ~~g~~~~~ 517 (579)
..|.+.|.
T Consensus 356 ~GG~~~D~ 363 (403)
T PF03209_consen 356 LGGALRDL 363 (403)
T ss_pred HHHHHHHH
Confidence 88888764
No 121
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.56 E-value=4.1e-13 Score=141.03 Aligned_cols=368 Identities=14% Similarity=0.123 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchh--hHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~--~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
..+.+.....+-.+..++......+..+.....++.+.... ...+.......+...+.++..|.++||+|||..+.+.
T Consensus 19 ~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~ 98 (463)
T KOG2816|consen 19 SMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLP 98 (463)
T ss_pred hhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHH
Confidence 34455566666667777777666667676666655433222 1112232233678888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhh--chhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060 106 DFLFFVGAVIMAAAPNPGALITGRVFVGLG--VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig--~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~ 183 (579)
++...+..+...+.. +|.++ +.|+. .+.......++++|....++|....++....+..+..++|.+++.+..
T Consensus 99 ~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 99 LFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred HHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888777776655 33333 44443 334567778899999999999999999999999999999999999988
Q ss_pred CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhh
Q 008060 184 APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI 262 (579)
Q Consensus 184 ~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
..+ .-.+|.+..+..++..+. ++++||+-..-.+. + ... +. ............+...
T Consensus 174 ~~~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~-~~~--~~---------------~~~~~~~~~~~~~~~~ 231 (463)
T KOG2816|consen 174 FLG-IALVFLIAAASGILSLLYMLLFLPESLQEKERS---D-ATL--RE---------------LTPGSLDSSHVADAFQ 231 (463)
T ss_pred hcC-chHHHHHHHHHHHHHHHHHhhccccccCccccc---c-ccc--cc---------------cCCCcccchhhhhhhh
Confidence 776 888888888888877776 67788883210000 0 000 00 0000000000000011
Q ss_pred hHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHhhcCC
Q 008060 263 NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI-YFIDRTGR 341 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~ 341 (579)
...+ .++++.. +.......+..........-..+.|++.....+....+.+.........++.++.. .+...++.
T Consensus 232 ~~~~-~~~~r~~---l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~ 307 (463)
T KOG2816|consen 232 SLTK-VGPDRLL---LLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGE 307 (463)
T ss_pred hhcc-cCCCccc---hHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 1122211 11111111000000000010113344444444555556555555555677776665 77777898
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060 342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL 421 (579)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (579)
|++...|.....+..+.+.+..+
T Consensus 308 ~~~i~lGl~~~~~~~~~~af~~~--------------------------------------------------------- 330 (463)
T KOG2816|consen 308 KRLISLGLLSEFLQLLLFAFATE--------------------------------------------------------- 330 (463)
T ss_pred hhHhhHHHHHHHHHHHHHHHhcc---------------------------------------------------------
Confidence 88888888888888888887644
Q ss_pred CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060 422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW 501 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~ 501 (579)
.|.+.....+. .+.....+...+..+...+++.+|.+.++......
T Consensus 331 --------------------------------~w~~~~~~v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~ 376 (463)
T KOG2816|consen 331 --------------------------------TWMMFAAGVVV--ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEG 376 (463)
T ss_pred --------------------------------chhhhHHHHHH--HhhcchhHHHHhHHHhhcccccccchhhHHHHHHH
Confidence 22222222222 22333456667888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 008060 502 ISNLIVAQSFLSLTQA 517 (579)
Q Consensus 502 ~g~~i~~~~~g~~~~~ 517 (579)
+.+.++|.+++.++..
T Consensus 377 l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 377 LSGVVSPALYGNIFAL 392 (463)
T ss_pred HhhhhhHHHHHHHHHH
Confidence 9999999999988754
No 122
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.54 E-value=4e-14 Score=124.61 Aligned_cols=136 Identities=29% Similarity=0.489 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc
Q 008060 75 VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAK 154 (579)
Q Consensus 75 ~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~ 154 (579)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888899999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHH-HhccC
Q 008060 155 IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILM-LLLPE 211 (579)
Q Consensus 155 ~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~-~~lpe 211 (579)
+|++++++......+|..+++.+++.+.+..+ |++.|++.+++.++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999988776 9999999887777666654 44454
No 123
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.50 E-value=4.7e-13 Score=141.37 Aligned_cols=383 Identities=16% Similarity=0.180 Sum_probs=226.5
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-----chHHHHHHHHHHHHHHHHHHhc----ch
Q 008060 51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILVADFLFFVGAVIMAAA----PN 121 (579)
Q Consensus 51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-----rr~vl~~~~~l~~i~~ll~~~a----~~ 121 (579)
....|.+++++|+++.+. ..+.+...+...+ -++.|.++|.+. ||+-++++.++.+++.+..+.. .+
T Consensus 10 ~~~~~~l~~~l~ls~~~~---~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQL---QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS 85 (433)
T ss_pred HHHHHHHHHHcCCCHHHH---HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence 456678899999998888 7777777777655 789999999873 4555566777766655555543 34
Q ss_pred hhHHHHHHHHHHhhchhhhhhHhHhhhhcCC--cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHH
Q 008060 122 PGALITGRVFVGLGVGMASMTSPLYISEASP--AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA 199 (579)
Q Consensus 122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p--~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~ 199 (579)
.....+.-++..+|....-.++-+++.|... ++.|+...+.......+|.+++..++|.+.+..+ +|..|.+.+++.
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~ 164 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALP 164 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHH
Confidence 6666677788889999999999999999874 3347788888888999999999999999998877 999999888776
Q ss_pred HHHHHHH-HhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHH
Q 008060 200 LLQFILM-LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI 278 (579)
Q Consensus 200 l~~~i~~-~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (579)
.+..+.. ++.+|.++ ...++... ..+..........++.....++.++.+..+...+
T Consensus 165 ~l~~~~~~~~~~e~~~-----~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 222 (433)
T PF03092_consen 165 LLMLIVALFLLEERKV-----RPADEVFS-----------------FGKEEVPCLFGSFREQLSELWRALQQRAIWQPIL 222 (433)
T ss_pred HHHHHHHHHhhhhccc-----cccchhhc-----------------ccccccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6666554 44444211 00000000 0000000000001122456677788887776655
Q ss_pred H-HHHHHHHHHHHHHHH-HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 008060 279 A-GVGLQVFQQFVGINT-VMYYSPTIVQLSG--FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL 354 (579)
Q Consensus 279 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 354 (579)
. .++.... ... ... ..++.. ...+ +.+....+.+..+..++.++|..+..+...+..-|+++....++.++
T Consensus 223 ~~~~~~~~~-~~~-~~a~~fy~~~---~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~ 297 (433)
T PF03092_consen 223 FFIFFFNLP-PSI-SSASSFYFQT---DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVL 297 (433)
T ss_pred HHHHHHHhc-cCC-CCccEEEEEe---ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2 1111110 000 000 011110 1112 12445555555666666777777776666666656665444433332
Q ss_pred HHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccc
Q 008060 355 SLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVK 434 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (579)
..+.-..... ||.
T Consensus 298 ~~l~~~~lv~--------------------------------~~n----------------------------------- 310 (433)
T PF03092_consen 298 ASLFDLLLVT--------------------------------RWN----------------------------------- 310 (433)
T ss_pred HhcccEEEEE--------------------------------EEe-----------------------------------
Confidence 2211111000 010
Q ss_pred cccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 008060 435 DLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSL 514 (579)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~ 514 (579)
...|.|++.-+..- -.+.-....+.+.|.. ...+|+.|+...|+.+++..+..++|..++..+...+
T Consensus 311 ----------~~~Gi~d~~f~lgd--~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l 377 (433)
T PF03092_consen 311 ----------LDLGIPDQWFALGD--TILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL 377 (433)
T ss_pred ----------eeeCcCCeEEEEEh--HHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11244555222222 2222223333333333 6788999999999999999999999999999998888
Q ss_pred HHhccc--------chhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 515 TQAIGT--------SWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 515 ~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
.+..|. .+..++..++.++.+.+. .++|+.+
T Consensus 378 ~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll-~lLp~~~ 416 (433)
T PF03092_consen 378 MELFGVTRDDFSNLWLLILICSVIQLLPLPLL-FLLPPQK 416 (433)
T ss_pred HHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HHcCCCc
Confidence 877652 334455555555555543 3456544
No 124
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.49 E-value=3.9e-13 Score=141.96 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=130.4
Q ss_pred hhhhhhhhhcccccch-----hhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc----hh
Q 008060 52 GALLYIRDDFKSVDRK-----TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP----NP 122 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~-----~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~----~~ 122 (579)
...+...++.+.+... ....+.+.++..++..++.++.|+++||+|||+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 4445555566544311 12338899999999999999999999999999999999999988877776632 24
Q ss_pred hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcC-----cchhHHHHhh
Q 008060 123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG-----TWRWMLGVAG 196 (579)
Q Consensus 123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~-----~Wr~~f~i~~ 196 (579)
+.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|.++||+++|++.+..+ +|+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999888998999999999999999999997 6789999999999999988643 3999999888
Q ss_pred HHHHHHHHH-HHhccCC
Q 008060 197 IPALLQFIL-MLLLPES 212 (579)
Q Consensus 197 i~~l~~~i~-~~~lpes 212 (579)
++.++..++ +++++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 877766665 5667776
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.48 E-value=1.1e-12 Score=145.46 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677889999999999999999999999999999999999999988888889999999988889999999999999
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060 152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP 213 (579)
Q Consensus 152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp 213 (579)
|.++|++++|+..+...+|.+++|++++.+... +...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999988764 356788888877777777777789873
No 126
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.46 E-value=9.6e-13 Score=139.31 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++.|.+
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 344 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF 344 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999899999999999999999999998888888889999999
Q ss_pred Ccccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060 152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES 212 (579)
Q Consensus 152 p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes 212 (579)
|++.|+...+. ++....+|.++++.+.+++.+..| ||..|.+.+++.++..++ ++.+++.
T Consensus 345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999887665 677788999999999999999887 999999988877666555 4444444
No 127
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.44 E-value=3.2e-12 Score=134.58 Aligned_cols=157 Identities=17% Similarity=0.085 Sum_probs=132.5
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008060 51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV 130 (579)
Q Consensus 51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~ 130 (579)
....|.+.++.|.+..+. +.+.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..+
T Consensus 240 ~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (406)
T PRK11551 240 LNWLPSLLVGQGLSRSQA---GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF 316 (406)
T ss_pred HHHHHHHHHhCCCChhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344577777788887777 89999999999999999999999999999998887777777777777888888888888
Q ss_pred HHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhcc
Q 008060 131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP 210 (579)
Q Consensus 131 l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lp 210 (579)
+.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+++.+.+..++|...++..+...++..+..+.+.
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 89998888888889999999999999999999999999999999999999988766577777777766666555544443
No 128
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.43 E-value=4.1e-12 Score=133.26 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=128.0
Q ss_pred hhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008060 52 GALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV 130 (579)
Q Consensus 52 ~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~ 130 (579)
...|. +.++++.+..+. +++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.++
T Consensus 237 ~~~p~~l~~~~~~~~~~~---g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (393)
T PRK15011 237 INMPLFIINELHLPEKLA---GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQL 313 (393)
T ss_pred HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34454 557788887776 88888877888889999999999999999888777666655555556778888888999
Q ss_pred HHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhcc
Q 008060 131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP 210 (579)
Q Consensus 131 l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lp 210 (579)
+.+++.+...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++..+..++.|
T Consensus 314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988887777778888999986 58999999999999999999999999998776 99999988888877777776666
Q ss_pred C
Q 008060 211 E 211 (579)
Q Consensus 211 e 211 (579)
|
T Consensus 392 ~ 392 (393)
T PRK15011 392 D 392 (393)
T ss_pred C
Confidence 5
No 129
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.43 E-value=1.5e-12 Score=134.96 Aligned_cols=148 Identities=17% Similarity=0.058 Sum_probs=126.0
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh--hHHHHHH
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP--GALITGR 129 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~--~~ll~~R 129 (579)
...+.+.++++.++.+. +++.+.+.++..+++++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..
T Consensus 226 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFL---VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV 302 (377)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 34455667788776666 889999999999999999999999999999999999888888887776643 3345667
Q ss_pred HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHH
Q 008060 130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF 203 (579)
Q Consensus 130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~ 203 (579)
++.|++.+...+....++.|.+|+++|++++++......+|..++|.+.+.+.+..+ |++.|.+.+++.++..
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence 888888888888888899999999999999999999999999999999999998877 9999998887666543
No 130
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.40 E-value=7.2e-12 Score=128.29 Aligned_cols=165 Identities=24% Similarity=0.344 Sum_probs=144.8
Q ss_pred HHHhhhhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchH-HHHHHHHHHHHHHHHHH
Q 008060 40 GLLFGYDTGVISGALLYIRDDF-KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT-SILVADFLFFVGAVIMA 117 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~~~-~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~-vl~~~~~l~~i~~ll~~ 117 (579)
.+.............|.+.++. |.+..+. ++..+...++..++.++.+++.||+|||+ .+..+..+..++.+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEA---GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666554 7777777 99999999999999999999999999999 99999999999999999
Q ss_pred hcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhH
Q 008060 118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI 197 (579)
Q Consensus 118 ~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i 197 (579)
..++.+.+.+..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+.+..+ |++.+++.++
T Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~ 339 (352)
T cd06174 261 LAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAA 339 (352)
T ss_pred HhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998776 9999999998
Q ss_pred HHHHHHHHHHh
Q 008060 198 PALLQFILMLL 208 (579)
Q Consensus 198 ~~l~~~i~~~~ 208 (579)
+.++..+..++
T Consensus 340 ~~~i~~i~~~~ 350 (352)
T cd06174 340 LALLAALLLLL 350 (352)
T ss_pred HHHHHHHHhee
Confidence 88877766543
No 131
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.38 E-value=1.2e-11 Score=129.94 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=130.1
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF 131 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l 131 (579)
...+.+..+.+. .+. ++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus 237 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 237 TFITLYYAARGW--DGA---ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHccc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334444444454 233 566778888999999999999999999999999988888888888888888888899999
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccC
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE 211 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpe 211 (579)
.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.+.+.++..+..+++++
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888888888899999999999999999999999999999999988777 999999988887777766555544
Q ss_pred C
Q 008060 212 S 212 (579)
Q Consensus 212 s 212 (579)
.
T Consensus 391 ~ 391 (399)
T PRK05122 391 R 391 (399)
T ss_pred c
Confidence 4
No 132
>TIGR00895 2A0115 benzoate transport.
Probab=99.37 E-value=2.2e-11 Score=127.22 Aligned_cols=170 Identities=20% Similarity=0.131 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcc
Q 008060 286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE 365 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+...........+.|.+.++.+. +....+++.....++.+++.++.|+++||+|||+.+..+..+..++.+++....+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~- 104 (398)
T TIGR00895 27 LMDGYDLAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN- 104 (398)
T ss_pred HHHHHHHHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc-
Confidence 33334445556667777777665 5566778888888889999999999999999999999888877777666554311
Q ss_pred cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060 366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
T Consensus 105 -------------------------------------------------------------------------------- 104 (398)
T TIGR00895 105 -------------------------------------------------------------------------------- 104 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 008060 446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFL 525 (579)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~ 525 (579)
.+. ++...++.+.......+...++..|.+|++.|+.++|+.+....+|..++|.+.+.+.+..||+..|.
T Consensus 105 --------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~ 175 (398)
T TIGR00895 105 --------VTQ-LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY 175 (398)
T ss_pred --------hHH-HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence 111 22222222222223345667889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCC
Q 008060 526 IFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~ 546 (579)
+.+++.++..++.+..+||+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 176 VGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhhhHHHHHHHHHHHhCCCCC
Confidence 987777776666666677764
No 133
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.37 E-value=1.9e-11 Score=128.73 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=129.9
Q ss_pred hhhhhhhhhhhcccccch-hhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 008060 50 ISGALLYIRDDFKSVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG 128 (579)
Q Consensus 50 ~~~~lp~i~~~~~~s~~~-~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~ 128 (579)
..+..+.+..+.+.+..+ ....+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344455544443322222 2223677777888889999999999999999999999988888888888888888899999
Q ss_pred HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML 207 (579)
Q Consensus 129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~ 207 (579)
+++.|++.+...+....++.+..|+++|++.++++.....+|..+||.+++.+.+..+ |++.|++.+++.++..+..+
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887 99999999988777666543
No 134
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.35 E-value=1.6e-11 Score=131.19 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=127.9
Q ss_pred hhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc--cchHHHHH--HHHHHHHHHHHHHh
Q 008060 43 FGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILV--ADFLFFVGAVIMAA 118 (579)
Q Consensus 43 ~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~--Grr~vl~~--~~~l~~i~~ll~~~ 118 (579)
...........+|.+.+++|.+..+. +++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++...
T Consensus 253 ~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 329 (455)
T TIGR00892 253 MFLGFFAPIIFLVPYAKDKGVDEYEA---AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL 329 (455)
T ss_pred HHHHccchHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445566667788887777 9999999999999999999999983 34443333 34444555566677
Q ss_pred cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHH
Q 008060 119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP 198 (579)
Q Consensus 119 a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~ 198 (579)
.++++.+++.+++.|++.+...+...+++.|.+|+++|++++++++....+|..+||.+++.+.+..++|++.|++.+++
T Consensus 330 ~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~ 409 (455)
T TIGR00892 330 AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI 409 (455)
T ss_pred hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998776699999998877
Q ss_pred HHHHHH
Q 008060 199 ALLQFI 204 (579)
Q Consensus 199 ~l~~~i 204 (579)
.++..+
T Consensus 410 ~li~~~ 415 (455)
T TIGR00892 410 VVSAGL 415 (455)
T ss_pred HHHHHH
Confidence 665544
No 135
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.35 E-value=2.5e-11 Score=126.76 Aligned_cols=155 Identities=12% Similarity=0.022 Sum_probs=133.2
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI 126 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll 126 (579)
...+....|.+.+++|.+.... |.+.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.++
T Consensus 221 ~~~~~~~~~~~l~~~g~s~~~~---g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T TIGR00902 221 HAAYYGFSAIYWQAAGISASAT---GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIF 297 (382)
T ss_pred HHHHHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 3334445566657789888777 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 127 ~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
+.+++.|++.+...+....++.+. |+++|+++.++++ ...++|.++++.++|++.+..+ + ..|++.+.+.++..++
T Consensus 298 ~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 298 LLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 9999999999986 5788999999999999999886 6 5566677666655444
Q ss_pred HH
Q 008060 206 ML 207 (579)
Q Consensus 206 ~~ 207 (579)
..
T Consensus 375 ~~ 376 (382)
T TIGR00902 375 IP 376 (382)
T ss_pred HH
Confidence 33
No 136
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.35 E-value=2.1e-11 Score=126.65 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=126.8
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Q 008060 56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135 (579)
Q Consensus 56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig 135 (579)
.+.+++|.+..+. +++.+.......++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++
T Consensus 225 ~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 301 (375)
T TIGR00899 225 LIIHELGLPDKLA---GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF 301 (375)
T ss_pred HHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788877776 8887777777788899999999999999999888777766666666677888888899999999
Q ss_pred chhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccC
Q 008060 136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE 211 (579)
Q Consensus 136 ~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpe 211 (579)
.+...+....++.|..|++ |+++++++.....+|..++|.+++.+.+..+ |+..|++.+++.++..+...+++|
T Consensus 302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence 9988888888999998864 6799999999999999999999999988877 999999998887777776655543
No 137
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.34 E-value=4.2e-10 Score=111.91 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=165.9
Q ss_pred hhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHH
Q 008060 48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALIT 127 (579)
Q Consensus 48 ~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~ 127 (579)
...+|.+..+-+++|.+..+. +.+....+...++..++.|.++||+|||+..+.-+++.+++++ +-..++++.+++
T Consensus 51 WLQGpY~Y~LY~~yg~~~~qI---a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~ 126 (354)
T PF05631_consen 51 WLQGPYLYALYESYGFSEHQI---AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLL 126 (354)
T ss_pred HhhcchhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHH
Confidence 344566666667899998888 9999999999999999999999999999999999999998886 445689999999
Q ss_pred HHHHHHhhchhhhhhHhHh-hhhcCC----cccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHH
Q 008060 128 GRVFVGLGVGMASMTSPLY-ISEASP----AKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPAL 200 (579)
Q Consensus 128 ~R~l~Gig~g~~~~~~~~~-l~e~~p----~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l 200 (579)
+|++.|++....+..--++ +.|+-. ++..+..++... ...++-.+++.+++-++.+..+ +-..+|.....+.+
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~ 206 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA 206 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 9999999999988887765 455532 222233333222 2233445556666666666544 23678887777666
Q ss_pred HHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHH
Q 008060 201 LQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA 279 (579)
Q Consensus 201 ~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (579)
+..++ ....+|.+..-. +. .+..+.-....+.+.++|+++.
T Consensus 207 ~~~~~I~~~W~ENyg~~~---~~-------------------------------~~~~~~~~~a~~~i~~d~ril~---- 248 (354)
T PF05631_consen 207 VAAVLILKTWPENYGDTS---SS-------------------------------SSLSGSFREAWRAILSDPRILL---- 248 (354)
T ss_pred HHHHHHHhcccccCCCcc---cc-------------------------------cchHHHHHHHHHHHHcCchhHH----
Confidence 66655 344566532000 00 0000011223445556666532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHH
Q 008060 280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGV 358 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~ 358 (579)
....+..+....+..+..|.|..- ......--+++.....+..++|+.+..++..+- .....+...+.+..+++.+
T Consensus 249 LG~~qslFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~ 325 (354)
T PF05631_consen 249 LGLIQSLFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAI 325 (354)
T ss_pred HHHHHHHHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 233444444555555666677664 111122246777777777899998887655543 3333333434444444433
No 138
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.34 E-value=5.6e-11 Score=125.44 Aligned_cols=179 Identities=13% Similarity=0.038 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHH
Q 008060 278 IAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG 357 (579)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 357 (579)
+....+.++.++.-.....+..|.+.++.+. +..+.++......++..++.+..|++.||+|||+++..+.++..++.+
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGL-SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3333444444455455555566655455544 677788888889999999999999999999999999988888888777
Q ss_pred HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccc
Q 008060 358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLC 437 (579)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (579)
+.....+
T Consensus 89 ~~~~~~~------------------------------------------------------------------------- 95 (412)
T TIGR02332 89 ATMFATG------------------------------------------------------------------------- 95 (412)
T ss_pred HHHHhcC-------------------------------------------------------------------------
Confidence 7665421
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 008060 438 HDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ- 516 (579)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~- 516 (579)
.+. ++..-++.+....+..+....++.|.+|++.|+.++|+.+....+|..+++.+.+.+.+
T Consensus 96 ----------------~~~-l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 96 ----------------PES-LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred ----------------HHH-HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111 22222233333333345555778999999999999999999999999999999998874
Q ss_pred -----hcccchhhHHHHHHHHHHHHHhhhhccCCCC
Q 008060 517 -----AIGTSWTFLIFGVISVAALLFVLIFVPETKG 547 (579)
Q Consensus 517 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (579)
..||++.|.+.++..++..++.++++||+++
T Consensus 159 ~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 159 DGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3689999999988888777766777788764
No 139
>PRK10054 putative transporter; Provisional
Probab=99.34 E-value=3.9e-11 Score=125.86 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060 285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
.++...+.+....++|.++++..+.+..+.++......++.+++.++.|+++||+|||+++..+.++..++.+++.+..+
T Consensus 16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~ 95 (395)
T PRK10054 16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN 95 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH
Confidence 34445566777778888887665557788888888888889999999999999999999998888877777766554321
Q ss_pred ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060 365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (579)
T Consensus 96 -------------------------------------------------------------------------------- 95 (395)
T PRK10054 96 -------------------------------------------------------------------------------- 95 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060 445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF 524 (579)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (579)
.+..++...+...... ...+....+..|..|++.|+++.|+.+...++|.+++|.+.+.+.+ .||+..|
T Consensus 96 ---------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f 164 (395)
T PRK10054 96 ---------VTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF 164 (395)
T ss_pred ---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence 1112222222222222 2244556778899999999999999999999999999999998875 6899999
Q ss_pred HHHHHHHHHHHHHhhhhccCCC
Q 008060 525 LIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
.+.+++.+++.++..+.+|+.+
T Consensus 165 ~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 165 WLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 9888888877666555565543
No 140
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.33 E-value=2.4e-11 Score=129.14 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060 285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
.+..+........+.|.+.++.+. +..+.+++.....++..++.++.|+++||+|||+++..+.++..++.++.....+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 110 (434)
T PRK11663 32 YALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS 110 (434)
T ss_pred HHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH
Confidence 333333344556678888888766 5667788888889999999999999999999999999888888887776654321
Q ss_pred ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060 365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (579)
T Consensus 111 -------------------------------------------------------------------------------- 110 (434)
T PRK11663 111 -------------------------------------------------------------------------------- 110 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060 445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF 524 (579)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (579)
.+..++...+...+.+.. .+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||++.|
T Consensus 111 ---------~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 111 ---------LWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred ---------HHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 111222222222223222 3455678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCC
Q 008060 525 LIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~ 545 (579)
.+.+++.++..++.++.+||+
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 181 MIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 998887776655545555654
No 141
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.33 E-value=5.8e-11 Score=125.57 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=133.6
Q ss_pred hhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 008060 51 SGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGR 129 (579)
Q Consensus 51 ~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R 129 (579)
....|.+.++ +|.+.... +++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...+..
T Consensus 243 ~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQI---GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL 319 (417)
T ss_pred HHhhHHHHHhccCCChhHh---HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 3445666555 88877776 9999999999999999999999998888888888888888888888888888888899
Q ss_pred HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH-HHHh
Q 008060 130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI-LMLL 208 (579)
Q Consensus 130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i-~~~~ 208 (579)
++.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+.+..+ ++..+++.++..++..+ .+..
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHh
Confidence 999999888778888899999999999999999999999999999999999999877 88888777765555444 4566
Q ss_pred ccCC
Q 008060 209 LPES 212 (579)
Q Consensus 209 lpes 212 (579)
+++.
T Consensus 399 ~~~~ 402 (417)
T PRK10489 399 LGEL 402 (417)
T ss_pred cccc
Confidence 6665
No 142
>PRK12382 putative transporter; Provisional
Probab=99.32 E-value=3.7e-11 Score=125.93 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=127.8
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF 131 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l 131 (579)
...|.+.++.+.+ +. ++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus 237 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 237 TFVSLYFASKGWA--MA---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHHhcCCc--hh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444444555543 23 566677888889999999999999999999999999988888888888888888899999
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML 207 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~ 207 (579)
.|++.+...+.....+.|.+|+++|++++++++....+|..++|.+.+++.+..+ |++.|.+.+++.++..+..+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence 9999998888888889999999999999999999999999999999999999887 99999999887777666543
No 143
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.32 E-value=3.1e-11 Score=125.67 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 008060 293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPM 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (579)
.......|.+.++.+. +....+++.....++.+++.++.|+++||+|||+.+..+..+..++..++....+
T Consensus 11 ~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-------- 81 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGL-SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA-------- 81 (399)
T ss_pred HhhhHhHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC--------
Confidence 4444555666666655 5667788888899999999999999999999999999888887777776655421
Q ss_pred cccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCC
Q 008060 373 VSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSK 452 (579)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (579)
T Consensus 82 -------------------------------------------------------------------------------- 81 (399)
T TIGR00893 82 -------------------------------------------------------------------------------- 81 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 008060 453 FGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISV 532 (579)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~ 532 (579)
.+...+...+.+.+ .....+....++.|.+|++.|+.++|+.+....+|..++|.+.+.+.+..+|++.|.+.+++.+
T Consensus 82 -~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (399)
T TIGR00893 82 -YVSLYILRVLLGAA-EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGI 159 (399)
T ss_pred -HHHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 12223333333333 2233455668899999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhhhhccCCCC
Q 008060 533 AALLFVLIFVPETKG 547 (579)
Q Consensus 533 ~~~~~~~~~~~~~~~ 547 (579)
+..++.++..||++.
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHhhheecCCCC
Confidence 777766666666544
No 144
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.29 E-value=7.3e-11 Score=126.74 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
.+++..++............|. +.+++|.+..+. ++..+...++..++.+++|+++||+|||+.+.....+..++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a---~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA---INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344444444444444555664 567799988887 889999999999999999999999999988766544443332
Q ss_pred --HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhcc-------
Q 008060 114 --VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTR------- 183 (579)
Q Consensus 114 --ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~------- 183 (579)
+.....++.+.+.+.+++.|++...........+.|.+|+++|+.+.|+.+....+ |..++|.+.|++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 22334456667778888888654333333345677999999999999999988886 77999999999998
Q ss_pred -----CcCcchhHHHHhhHHHHHHHHHHHh
Q 008060 184 -----APGTWRWMLGVAGIPALLQFILMLL 208 (579)
Q Consensus 184 -----~~~~Wr~~f~i~~i~~l~~~i~~~~ 208 (579)
..+ |+..|++.++..++..+..++
T Consensus 419 ~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 419 IFGYTLTG-WAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred cccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence 444 999999887777666555443
No 145
>PRK03545 putative arabinose transporter; Provisional
Probab=99.29 E-value=1.4e-10 Score=121.45 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=120.5
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH-HHHHhcchhhHHHHHHHH
Q 008060 53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA-VIMAAAPNPGALITGRVF 131 (579)
Q Consensus 53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~-ll~~~a~~~~~ll~~R~l 131 (579)
..|.+.+++|.+..+. +++.+...++..+++++.|+++||+|||++.. +..+..++. ++....++.+.+++..++
T Consensus 228 ~~~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l 303 (390)
T PRK03545 228 IEPFVQQVAGLSENFA---TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIF 303 (390)
T ss_pred HHHHHHHhcCCCccHH---HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 3345566678877777 88999999999999999999999999887544 444444443 334556788888888999
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML 207 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~ 207 (579)
.|++.+...+.....+.+..| ++|+++++++.....+|..+|++++|.+.+..+ ++..|++.+.+.++..+...
T Consensus 304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHH
Confidence 999887777777788888876 578999999999999999999999999999887 99999999988777666643
No 146
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.29 E-value=1.5e-09 Score=110.98 Aligned_cols=311 Identities=11% Similarity=0.060 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF 110 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~ 110 (579)
....+|+..|+..+ +-.-..+.|++.+. .|++.++.. .-+.-+..-.+....++...+.|..|.|++++++.+...
T Consensus 6 ~~~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~--~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 6 ITLLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVN--NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33444444444332 22223344555554 677777663 446666666778888999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cch
Q 008060 111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWR 189 (579)
Q Consensus 111 i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr 189 (579)
+..++.-+.++...+-+..++.|++.+ ...+-.+++-...|+++-.++.+...++.-+|..++.++|-.+....+ +.+
T Consensus 83 ~t~~lll~~~sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~ 161 (412)
T PF01770_consen 83 ITWLLLLFGTSVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF 161 (412)
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 999999999999999999999999887 467777888888898888999999999999999999999988876432 356
Q ss_pred hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCC--CchhhhHHHhhhhhh---hhHHhhccchhhhH
Q 008060 190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPA--HEVETEIRDLKESVD---KEIEEEGSSEKINL 264 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 264 (579)
..+.+......+..+..+++|..++-...+.+.++... .+..... ++.++...+..+... ......-..-..++
T Consensus 162 ~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (412)
T PF01770_consen 162 QLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDF 240 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHH
Confidence 66666665555566666778876653322222111100 0000000 000000000000000 00000011123456
Q ss_pred HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008060 265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK 342 (579)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 342 (579)
++..++|.++.+.+... +...++..+.+|.....++. ........|.+-....+.+.++++..|++..+..+.
T Consensus 241 ~~~y~~~~ll~WSlWWa-----~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~ 315 (412)
T PF01770_consen 241 KSCYSNPRLLLWSLWWA-----FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW 315 (412)
T ss_pred HHHhcCchHHHHHHHHH-----HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence 66777777766555433 33446677777776666665 222334456666777777888889999986666665
Q ss_pred hhhHHHHHHH
Q 008060 343 KLLVISLSGV 352 (579)
Q Consensus 343 ~~~~~~~~~~ 352 (579)
.-+.++....
T Consensus 316 ~~l~l~~~S~ 325 (412)
T PF01770_consen 316 GELALGVFSL 325 (412)
T ss_pred HHHHHHHHHH
Confidence 5555444433
No 147
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.29 E-value=1.1e-10 Score=121.78 Aligned_cols=168 Identities=16% Similarity=0.054 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCC
Q 008060 290 VGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSH 369 (579)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (579)
.+........|.+.++.+. +..+.++......++..++.++.|++.||+|||+.+..+..+..++.+++....+
T Consensus 19 ~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~----- 92 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN----- 92 (385)
T ss_pred HHHHHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 3444454556777777766 5567788888889999999999999999999999999888888777776654321
Q ss_pred CCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCC
Q 008060 370 SPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGC 449 (579)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (579)
T Consensus 93 -------------------------------------------------------------------------------- 92 (385)
T TIGR00710 93 -------------------------------------------------------------------------------- 92 (385)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 008060 450 PSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGV 529 (579)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~ 529 (579)
.+. +....++.+.......+....+..|.+|++.|+.++|+.+....+|..++|.+.+.+.+..||+..|++.++
T Consensus 93 ----~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 167 (385)
T TIGR00710 93 ----IET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL 167 (385)
T ss_pred ----HHH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 111 222222222222223445567889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhhhccCCCCC
Q 008060 530 ISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~ 548 (579)
+.++..+..++..||++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 168 AGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHhCCCCCCC
Confidence 8888777766667776543
No 148
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.28 E-value=2.7e-11 Score=126.27 Aligned_cols=157 Identities=17% Similarity=0.098 Sum_probs=120.1
Q ss_pred HHhhhhhhhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH--HHHH
Q 008060 41 LLFGYDTGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA--VIMA 117 (579)
Q Consensus 41 ~~~~~~~~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~--ll~~ 117 (579)
+.............|.+. ++++.+..+. +.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 305 (394)
T TIGR00883 229 IATTTTFYLITTYLPTYLTQTLGLSANSA---LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA 305 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445556554 6788877777 888899999999999999999999999998775554443332 2222
Q ss_pred h--cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060 118 A--APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGV 194 (579)
Q Consensus 118 ~--a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i 194 (579)
+ .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ ...+..+|..++|.+++++.+..++|++.++.
T Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 2 35677777888999999988999999999999999999999998 45666789999999999999887768888777
Q ss_pred hhHHHH
Q 008060 195 AGIPAL 200 (579)
Q Consensus 195 ~~i~~l 200 (579)
..+..+
T Consensus 386 ~~~~~l 391 (394)
T TIGR00883 386 LAALAL 391 (394)
T ss_pred HHHHHH
Confidence 665544
No 149
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.28 E-value=6.3e-11 Score=126.89 Aligned_cols=180 Identities=15% Similarity=0.071 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060 30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~ 109 (579)
+..+....+..+.............|.+.+++|.+..+. ++......++..++.++.|+++||+|||+.+.++.++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 359 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA---FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM 359 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 334444444444444444455566778888888887666 88888899999999999999999999999999998888
Q ss_pred HHHHHHHHh-----cc------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH
Q 008060 110 FVGAVIMAA-----AP------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN 178 (579)
Q Consensus 110 ~i~~ll~~~-----a~------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~ 178 (579)
+++.++.++ .+ +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~ 439 (481)
T TIGR00879 360 AICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF 439 (481)
T ss_pred HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777652 11 2223333333333322334466667789999999999999999999999999999999
Q ss_pred HHhccCcCcchhHHHHhhHHHHHHHHHH-HhccCCh
Q 008060 179 LAFTRAPGTWRWMLGVAGIPALLQFILM-LLLPESP 213 (579)
Q Consensus 179 ~~l~~~~~~Wr~~f~i~~i~~l~~~i~~-~~lpesp 213 (579)
+.+.+..+ |++.|++.++++++..+.. ++.||++
T Consensus 440 ~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 440 PTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHhcC-ccceehhHHHHHHHHHHHHheecccCC
Confidence 99988776 9999999888877776664 4556653
No 150
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.28 E-value=1.7e-10 Score=121.46 Aligned_cols=157 Identities=12% Similarity=0.020 Sum_probs=120.7
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH-HHHHHHHHHHHHHH-----hcc
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMA-----AAP 120 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~-~~~~l~~i~~ll~~-----~a~ 120 (579)
........|.+.+++|.+..+. +++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+... ..+
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 314 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEW---LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH 314 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3344456677778888887777 88888899999999999999999999988764 33333333333322 134
Q ss_pred hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHH
Q 008060 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL 200 (579)
Q Consensus 121 ~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l 200 (579)
+.+.+++..++.|++.+...+. ...+.|..| ++|++++|+.+....+|..++|.+++.+.+..+ |+..|++.+++.+
T Consensus 315 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~ 391 (402)
T TIGR00897 315 SFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYV 391 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHH
Confidence 6777778888999988876554 456677655 579999999999999999999999999999887 9999999988877
Q ss_pred HHHHHHHhc
Q 008060 201 LQFILMLLL 209 (579)
Q Consensus 201 ~~~i~~~~l 209 (579)
+..++..++
T Consensus 392 i~~~~~~~~ 400 (402)
T TIGR00897 392 VSAFLTAFI 400 (402)
T ss_pred HHHHHHHHh
Confidence 776665554
No 151
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.27 E-value=1.4e-10 Score=121.70 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=126.7
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc-hhhHH
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP-NPGAL 125 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~-~~~~l 125 (579)
........|.+.+++|.+..+. +.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+
T Consensus 221 ~~~~~~~lp~~l~~~g~s~~~a---g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 297 (393)
T PRK09705 221 YASLIAWLPAFYIEIGASAQYS---GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL 297 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhhh---hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3334445566666788887777 9999999999999999999999999999999888887777766554333 22222
Q ss_pred HHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060 126 ITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204 (579)
Q Consensus 126 l~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i 204 (579)
.-++.|++.+...+.......+.++ +++|++.+++.+....++..++|.+.+++.+..++|+..|++.++.+++..+
T Consensus 298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK09705 298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI 375 (393)
T ss_pred --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 2346688888888877777777775 5788999999999999999999999999999887799999888877766665
Q ss_pred H-HHhccCCh
Q 008060 205 L-MLLLPESP 213 (579)
Q Consensus 205 ~-~~~lpesp 213 (579)
. +.+.||++
T Consensus 376 ~~~~~~~~~~ 385 (393)
T PRK09705 376 ITLRFAPARF 385 (393)
T ss_pred HHHHhccccc
Confidence 5 55667763
No 152
>PRK03699 putative transporter; Provisional
Probab=99.26 E-value=1.2e-10 Score=122.32 Aligned_cols=161 Identities=16% Similarity=0.061 Sum_probs=131.5
Q ss_pred hhhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHH
Q 008060 47 TGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGAL 125 (579)
Q Consensus 47 ~~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~l 125 (579)
...+....|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||+++.....+..+...+....++.+.+
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 297 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDA---GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHL 297 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHh---hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 333444556554 6789888777 999999999999999999999999999999988877777777777777888777
Q ss_pred HHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
.+..++.|++.+..++...++..|..|. ++++..+.......+|..++|.+.+++.+..+ |+..+++.+++.++..+.
T Consensus 298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 298 LYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHH
Confidence 7788899998888888888888887764 46788888888999999999999999999877 999999888887777666
Q ss_pred HHhccCC
Q 008060 206 MLLLPES 212 (579)
Q Consensus 206 ~~~lpes 212 (579)
...+++.
T Consensus 376 ~~~~~~~ 382 (394)
T PRK03699 376 CILLGFV 382 (394)
T ss_pred HHHHHHH
Confidence 5555443
No 153
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.1e-10 Score=117.38 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHH
Q 008060 277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSL 356 (579)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 356 (579)
+++..++.+...+..--.+..-.|.+.++.+ .+..+.+.+.+...+..-++.++.|.++||.+.|+.+..++++.++..
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 3344444443333333344455666666655 477888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccc
Q 008060 357 GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDL 436 (579)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (579)
+++.+...
T Consensus 109 il~Gfs~s------------------------------------------------------------------------ 116 (448)
T COG2271 109 ILFGFSPS------------------------------------------------------------------------ 116 (448)
T ss_pred HHHhhhhH------------------------------------------------------------------------
Confidence 98887632
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHH--HHH
Q 008060 437 CHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSF--LSL 514 (579)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~--g~~ 514 (579)
...+..+..+.+.+...-.|.....+..-+|+++||+..++-|++.++|+++.|.+. +.+
T Consensus 117 ------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 117 ------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred ------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 122333333334443333566668888899999999999999999999999999999 899
Q ss_pred HHhcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 515 TQAIGTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 515 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
..+.+|+..|++-++++++..++.++..+++
T Consensus 179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888999999999999999888877766543
No 154
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.25 E-value=1.7e-10 Score=120.96 Aligned_cols=162 Identities=19% Similarity=0.092 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 008060 294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV 373 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (579)
......|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+.+++.++.....+
T Consensus 38 ~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------- 107 (394)
T PRK10213 38 LPVSLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS--------- 107 (394)
T ss_pred HHHhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh---------
Confidence 334456777777666 5566677777788889999999999999999999999999888887766554311
Q ss_pred ccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCc
Q 008060 374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKF 453 (579)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (579)
T Consensus 108 -------------------------------------------------------------------------------- 107 (394)
T PRK10213 108 -------------------------------------------------------------------------------- 107 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA 533 (579)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 533 (579)
.+..++.-.+.+.+.+ ...+....++.|.+|++.|+.+.++......+|..++|.+.+.+.+..||++.|++.+++.++
T Consensus 108 ~~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~ 186 (394)
T PRK10213 108 FSLLLIGRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL 186 (394)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 1222332233333222 234556678889999999999999999999999999999999999999999999998887777
Q ss_pred HHHHhhhhccCCC
Q 008060 534 ALLFVLIFVPETK 546 (579)
Q Consensus 534 ~~~~~~~~~~~~~ 546 (579)
..++.....||++
T Consensus 187 ~~l~~~~~~p~~~ 199 (394)
T PRK10213 187 CIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHCCCCC
Confidence 6655545567653
No 155
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.25 E-value=2e-10 Score=119.97 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=122.9
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF 131 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l 131 (579)
..+|.+.++.|.+.... +++.+...++..+++++.|+++||+|+|+++..+..+.+++.+... . .......+++
T Consensus 221 ~~lp~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l 294 (381)
T PRK03633 221 GLMPLYLNHQGMSDASI---GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI 294 (381)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence 34576666778777666 8889999999999999999999999999999888888777665543 2 2344556788
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHh
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL 208 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~ 208 (579)
.|++.....|...+.+.|..|+++++.+.+.+....++|.++||.+++++.+..+ |++.|.+.+.+.++..+.++.
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence 8888777889999999999998888888888888999999999999999999887 999999988877766555444
No 156
>PRK09952 shikimate transporter; Provisional
Probab=99.25 E-value=3e-10 Score=120.91 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=114.1
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh---c-chhhHHHHHHHH
Q 008060 56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA---A-PNPGALITGRVF 131 (579)
Q Consensus 56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~---a-~~~~~ll~~R~l 131 (579)
.+.+++|.+.... ..+..+..+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++
T Consensus 276 y~~~~~g~s~~~~---~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (438)
T PRK09952 276 YSTQNLGLPRELF---LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML 352 (438)
T ss_pred HHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556778766544 44445556667788899999999999999988887665554433322 2 234455556677
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCc-CcchhHHHHhhHHHHHHHHHHHhc
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAP-GTWRWMLGVAGIPALLQFILMLLL 209 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~-~~Wr~~f~i~~i~~l~~~i~~~~l 209 (579)
.|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. ++|+..+.+.++..++..+..+.+
T Consensus 353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 788888888888899999999999998888854 445589999999999998744 358988888888777777776666
Q ss_pred cCC
Q 008060 210 PES 212 (579)
Q Consensus 210 pes 212 (579)
+|+
T Consensus 433 ~~~ 435 (438)
T PRK09952 433 KDN 435 (438)
T ss_pred ccc
Confidence 665
No 157
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.25 E-value=7.3e-11 Score=127.72 Aligned_cols=146 Identities=16% Similarity=0.089 Sum_probs=114.1
Q ss_pred hhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc--chhhHHH
Q 008060 50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--PNPGALI 126 (579)
Q Consensus 50 ~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a--~~~~~ll 126 (579)
....+|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++.... .+.+.+.
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTV---ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLG 370 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 345566655 5888888777 999999999999999999999999999999888877766665544333 3444444
Q ss_pred HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHH
Q 008060 127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA 199 (579)
Q Consensus 127 ~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~ 199 (579)
+..++.+.......+....++.|.+|+++|++++++......+|..+||.+++.+.+..+ |+..+...+...
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~ 442 (496)
T PRK03893 371 LLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL 442 (496)
T ss_pred HHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence 555555444334456667789999999999999999999999999999999999999887 888876655443
No 158
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.24 E-value=2.8e-10 Score=119.32 Aligned_cols=175 Identities=17% Similarity=0.058 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060 283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+.+-.+........|.+.++.+. +....++......++.+++.++.|+++||+|||+.+..+..+..++..++...
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555666678888877766 55667777888888889999999999999999999998888877777665543
Q ss_pred hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060 363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (579)
.+
T Consensus 89 ~~------------------------------------------------------------------------------ 90 (392)
T PRK10473 89 ET------------------------------------------------------------------------------ 90 (392)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008060 443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSW 522 (579)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~ 522 (579)
.+..++...+.+ .......+....++.|.+|++.|+.+.|+.+....++..++|.+.+.+.+..||++
T Consensus 91 -----------~~~~~~~~~l~g-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~ 158 (392)
T PRK10473 91 -----------SSLFLAGRFLQG-IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQS 158 (392)
T ss_pred -----------HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence 111122222222 21112234556788999999999999999999999999999999998888889999
Q ss_pred hhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060 523 TFLIFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
.|++.+++.++..++.++..||++.+
T Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 159 LFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999988888777766667776543
No 159
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.24 E-value=3.1e-10 Score=115.36 Aligned_cols=170 Identities=19% Similarity=0.095 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060 283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..|......+.....+|.+-++.+. +...++.+...++.+..++.++...+.||+.||++++....+++++-++..+.
T Consensus 20 ~~~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA 98 (394)
T COG2814 20 LAAFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA 98 (394)
T ss_pred HHHHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455566677778888888877 66778999999999999999999999999999999999999999998887776
Q ss_pred hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060 363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (579)
.+
T Consensus 99 p~------------------------------------------------------------------------------ 100 (394)
T COG2814 99 PS------------------------------------------------------------------------------ 100 (394)
T ss_pred cc------------------------------------------------------------------------------
Confidence 43
Q ss_pred cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008060 443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSW 522 (579)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~ 522 (579)
+..+...=+........+.++..++..++.|+++|+.+++++.+...++..+|..+..++-|..||+.
T Consensus 101 ------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~ 168 (394)
T COG2814 101 ------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA 168 (394)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence 22233333333333334456777899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhcc
Q 008060 523 TFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~ 543 (579)
+|+..+++.++..+..+..+|
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999988898
No 160
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.24 E-value=4.3e-10 Score=119.45 Aligned_cols=162 Identities=13% Similarity=0.056 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060 289 FVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGVLSAVFHETT 367 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
...++.+..++|.|+++..+.+...++.+.........++.+++|+++||+ |||+.+.++.++..++.+++......
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~-- 99 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH-- 99 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 445677888899999876555777788888888888899999999999998 99999999999888887655422100
Q ss_pred CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060 368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR 447 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
T Consensus 100 -------------------------------------------------------------------------------- 99 (493)
T PRK15462 100 -------------------------------------------------------------------------------- 99 (493)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 008060 448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR--FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFL 525 (579)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~ 525 (579)
.....+.+.+...+.+ ...+...++++|.+|++ .|+++.++.++..++|++++|.+.+++.+..||++.|.
T Consensus 100 ------~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~ 172 (493)
T PRK15462 100 ------PSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFG 172 (493)
T ss_pred ------hhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence 0111222222222222 12344457889999875 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 008060 526 IFGVISVAALLFVL 539 (579)
Q Consensus 526 ~~~~~~~~~~~~~~ 539 (579)
+.++..+++.+..+
T Consensus 173 iaaigm~l~li~~~ 186 (493)
T PRK15462 173 LAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776666655543
No 161
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.23 E-value=4.7e-11 Score=123.76 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008060 291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS 370 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (579)
.........|.+.++.+. +..+.+++.....++.+++.++.|+++||+|||+++..+..+..++.+++....+
T Consensus 10 ~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------ 82 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS------ 82 (379)
T ss_pred hHHhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh------
Confidence 344555566766666565 5667788888889999999999999999999999999998888888777665421
Q ss_pred CccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCC
Q 008060 371 PMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP 450 (579)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (579)
T Consensus 83 -------------------------------------------------------------------------------- 82 (379)
T TIGR00881 83 -------------------------------------------------------------------------------- 82 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHH
Q 008060 451 SKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA-QSFLSLTQAIGTSWTFLIFGV 529 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~-~~~g~~~~~~g~~~~~~~~~~ 529 (579)
.+..++.. ++.+.......+...+++.|.+|++.|+.++|+.+....+|..++| .+.+.+.+..+|++.|++.++
T Consensus 83 ---~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (379)
T TIGR00881 83 ---LWVMAALW-ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGI 158 (379)
T ss_pred ---HHHHHHHH-HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 12222322 2223333333566678999999999999999999999999999999 466667777889999998888
Q ss_pred HHHHHHHHhhhhccCCC
Q 008060 530 ISVAALLFVLIFVPETK 546 (579)
Q Consensus 530 ~~~~~~~~~~~~~~~~~ 546 (579)
+.++..++.+++.||++
T Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 159 IAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHheeeCCCc
Confidence 88777666666666543
No 162
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.23 E-value=4.3e-10 Score=121.13 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=117.7
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--h-hh-H
Q 008060 49 VISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--N-PG-A 124 (579)
Q Consensus 49 ~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~-~~-~ 124 (579)
......|.+.+++|.+.... ++......+...++.++.|+++||+|||++++.+.++.+++.++.+... + .+ .
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~ 365 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV 365 (479)
T ss_pred HHHHHHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence 34455678888888877666 6666677888889999999999999999999999999888877765431 2 11 2
Q ss_pred HHHHHHHHHhhchh-hhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc------cCcCcchhHHHHhhH
Q 008060 125 LITGRVFVGLGVGM-ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT------RAPGTWRWMLGVAGI 197 (579)
Q Consensus 125 ll~~R~l~Gig~g~-~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~------~~~~~Wr~~f~i~~i 197 (579)
.....++.+.+.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+.+. +..+ |++.|++.++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ 444 (479)
T PRK10077 366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGC 444 (479)
T ss_pred HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHH
Confidence 22233444444433 23667889999999999999999999999999988876665443 4455 8888988887
Q ss_pred HHHHHHHH-HHhccCC
Q 008060 198 PALLQFIL-MLLLPES 212 (579)
Q Consensus 198 ~~l~~~i~-~~~lpes 212 (579)
++++..++ +++.||+
T Consensus 445 ~~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 445 MGVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHHhccccC
Confidence 76666665 4556776
No 163
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.22 E-value=1.1e-10 Score=125.98 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060 283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+.............|.+.++.+. +....++......++.+++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 87 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc
Confidence 33344444556666778888877766 55667888888999999999999999999999999999888888777665433
Q ss_pred hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060 363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (579)
.
T Consensus 88 ~------------------------------------------------------------------------------- 88 (485)
T TIGR00711 88 P------------------------------------------------------------------------------- 88 (485)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008060 443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSW 522 (579)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~ 522 (579)
++..++...++.+.......+...+++.|.+|++.|+.++++......+|..++|.+.+.+.+..||++
T Consensus 89 -----------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~ 157 (485)
T TIGR00711 89 -----------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW 157 (485)
T ss_pred -----------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence 111133333333333333455667889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhccCCCC
Q 008060 523 TFLIFGVISVAALLFVLIFVPETKG 547 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (579)
.|++.+.+.++..++.++..||+++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 158 IFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCccc
Confidence 9999888888777776666776543
No 164
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.22 E-value=6e-10 Score=116.84 Aligned_cols=172 Identities=15% Similarity=0.052 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060 283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..+.............|.+.++.+. +..+.++......++.+++.++.|+++||+|||+++..+..+.+++.++....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 97 (405)
T TIGR00891 19 LGWLLDAFDFFLVALVLAEVAGEFGL-TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555666667777666666 55667888888889999999999999999999999998888777776665543
Q ss_pred hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060 363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (579)
.+
T Consensus 98 ~~------------------------------------------------------------------------------ 99 (405)
T TIGR00891 98 PG------------------------------------------------------------------------------ 99 (405)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Q 008060 443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--T 520 (579)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~ 520 (579)
.+..++...+.+ .......+...+++.|.+|++.|+.++|+.++...+|.++++.+.+.+.+..+ |
T Consensus 100 -----------~~~l~~~~~l~G-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 100 -----------YITMFIARLVIG-IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred -----------HHHHHHHHHHHH-hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 111222222222 22223344556788999999999999999999999999999999999888766 8
Q ss_pred chhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 521 SWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
++.|.+.++..++..+ .....||++
T Consensus 168 ~~~f~~~~~~~~~~~~-~~~~~~~~~ 192 (405)
T TIGR00891 168 RALFFISILPIIFALW-LRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHHHH-HHHhCCCCh
Confidence 8888776655555433 334566654
No 165
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.21 E-value=2.4e-10 Score=117.92 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=116.8
Q ss_pred hhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcch-hhHHHHHH
Q 008060 52 GALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN-PGALITGR 129 (579)
Q Consensus 52 ~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~-~~~ll~~R 129 (579)
...|.+.++ ++.+..+. +++.+...++..++.++.+++.||+|||+.+..+..+.+++.++..+.++ ++.+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHY---GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW 308 (365)
T ss_pred HHhHHHHHHHhCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 455666554 78877777 99999999999999999999999999999999888888888888887774 88888999
Q ss_pred HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060 130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP 185 (579)
Q Consensus 130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~ 185 (579)
++.|++.+...+...+++.|.+|+++|+++.++......+|..+++.+++.+.+..
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999988753
No 166
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.21 E-value=4.6e-10 Score=117.28 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=121.9
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008060 53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFV 132 (579)
Q Consensus 53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~ 132 (579)
..|.+.+|.|.+..+. |.+.+...++..+..++.|++.||+|+|+++..+.++.+++.++.+++++.+.+++..++.
T Consensus 227 ~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (382)
T PRK11128 227 FSAIYWQAAGYSASTI---GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH 303 (382)
T ss_pred HHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3345556788877676 8888899999999999999999999999999999999999888888899999999999999
Q ss_pred HhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 133 GLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 133 Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
|++.+...+....++.+. +++++++..+.+. ...++|..+||.++|.+.+..+ + ..|+..+++.++.+++
T Consensus 304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence 999998889998888887 5556788888875 5567888999999999999887 6 4666666555544433
No 167
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.21 E-value=5.7e-10 Score=117.29 Aligned_cols=167 Identities=13% Similarity=-0.026 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060 288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT 367 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
...+.+....+.|.++++..+.+....++......+...+..++.|+++||+|||+++..+..+..++.+.+....+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~--- 98 (400)
T PRK11646 22 VVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE--- 98 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc---
Confidence 34455666777788876665557788888888888888888999999999999999999999888888777654311
Q ss_pred CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060 368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR 447 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
T Consensus 99 -------------------------------------------------------------------------------- 98 (400)
T PRK11646 99 -------------------------------------------------------------------------------- 98 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 008060 448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIF 527 (579)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (579)
.|...+...+..... ....+...+++.|.+|++.|+.++|+.+....+|..++|.+.+.+. ..||++.|++.
T Consensus 99 ------~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 99 ------PWLLWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred ------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 222233322222222 2223445677889999999999999999999999999999999998 67999999988
Q ss_pred HHHHHHHHHHhhhhccCC
Q 008060 528 GVISVAALLFVLIFVPET 545 (579)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~ 545 (579)
+++.++..++..+..||.
T Consensus 171 ~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 888777766555556654
No 168
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.20 E-value=1.7e-10 Score=118.52 Aligned_cols=167 Identities=22% Similarity=0.185 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCC
Q 008060 289 FVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTS 368 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (579)
...........|.++.+..+.+..+.+++.....++..++.++.|+++||+|||+++..+..+.+++.++..+. +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~---- 83 (352)
T PF07690_consen 9 GFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-S---- 83 (352)
T ss_dssp HHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-C----
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-h----
Confidence 33445555566634444444466778888888899999999999999999999999999998888884444432 1
Q ss_pred CCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccC
Q 008060 369 HSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRG 448 (579)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (579)
T Consensus 84 -------------------------------------------------------------------------------- 83 (352)
T PF07690_consen 84 -------------------------------------------------------------------------------- 83 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 008060 449 CPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFG 528 (579)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~ 528 (579)
..| .++...+..+.......+....++.|.+|+++|+.++|+.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus 84 ----~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 84 ----NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp ----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred ----hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 022 233333333333333456667899999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHhhhhccCC
Q 008060 529 VISVAALLFVLIFVPET 545 (579)
Q Consensus 529 ~~~~~~~~~~~~~~~~~ 545 (579)
++.++..++...+.++.
T Consensus 159 ~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHCCC---
T ss_pred chhhhhhhhHhhhhhhc
Confidence 99999877544444433
No 169
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.19 E-value=5e-09 Score=113.02 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=121.4
Q ss_pred hhhhhhhhcccccchhhHHHHHH-HHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH---Hhc-chhhHHHH
Q 008060 53 ALLYIRDDFKSVDRKTLLQESIV-SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAA-PNPGALIT 127 (579)
Q Consensus 53 ~lp~i~~~~~~s~~~~~~~g~l~-s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~---~~a-~~~~~ll~ 127 (579)
..|.+.+++|.+..+. +++. ....++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+
T Consensus 245 ~~~~l~~~~G~s~~~~---g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~ 321 (491)
T PRK11010 245 TTTFLIRGVGFDAGEV---GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA 321 (491)
T ss_pred HHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3345567789888887 8887 46668999999999999999999998777666555444322 333 45555555
Q ss_pred HHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060 128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML 207 (579)
Q Consensus 128 ~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~ 207 (579)
.-++..++.|...+...++..+..+++.+++..++.+...++|..+++.++|++.+..| |+..|.+.++++++..+...
T Consensus 322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence 66776666666667778888999999999999999999999999999999999999877 99999999988888777766
Q ss_pred hccCC
Q 008060 208 LLPES 212 (579)
Q Consensus 208 ~lpes 212 (579)
.++++
T Consensus 401 ~~~~~ 405 (491)
T PRK11010 401 VCRQT 405 (491)
T ss_pred HHHhc
Confidence 55543
No 170
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.19 E-value=1.9e-10 Score=122.51 Aligned_cols=164 Identities=15% Similarity=-0.046 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060 295 VMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS 374 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.....|.+. +. +.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+++........
T Consensus 46 ~~~~~p~~~-~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 116 (438)
T TIGR00712 46 FALAMPYLV-EQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATS------- 116 (438)
T ss_pred HHhhhHHHH-Hc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccc-------
Confidence 344556544 45 456777888888899999999999999999999999988888777777665543211000
Q ss_pred cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060 375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG 454 (579)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (579)
..
T Consensus 117 ------------------------------------------------------------------------------~~ 118 (438)
T TIGR00712 117 ------------------------------------------------------------------------------SI 118 (438)
T ss_pred ------------------------------------------------------------------------------hH
Confidence 01
Q ss_pred hHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchhhHHHHHHHHH
Q 008060 455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ-AIGTSWTFLIFGVISVA 533 (579)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~~~~ 533 (579)
+...+...+...+.+. ..+.....+.|.+|+++||+++|+.++...+++.+++.+.+...+ ..||+..|++.++++++
T Consensus 119 ~~l~~~~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i 197 (438)
T TIGR00712 119 AIMFVLLFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII 197 (438)
T ss_pred HHHHHHHHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1112222222322222 233444677889999999999999999999999999888776554 46899999999998888
Q ss_pred HHHHhhhhccCCC
Q 008060 534 ALLFVLIFVPETK 546 (579)
Q Consensus 534 ~~~~~~~~~~~~~ 546 (579)
..++.++++||++
T Consensus 198 ~~~~~~~~~~~~~ 210 (438)
T TIGR00712 198 VALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHhccCCH
Confidence 7766666677643
No 171
>PRK10504 putative transporter; Provisional
Probab=99.18 E-value=6.5e-10 Score=119.53 Aligned_cols=170 Identities=15% Similarity=0.042 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060 285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
.+........+..+.|.+.++.+. +....++......++..++.++.|+++||+|||+++..+..+..++.++.....+
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 97 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT 97 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444556677788999988766 5566677777778888999999999999999999998887777776665443211
Q ss_pred ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060 365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (579)
T Consensus 98 -------------------------------------------------------------------------------- 97 (471)
T PRK10504 98 -------------------------------------------------------------------------------- 97 (471)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060 445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF 524 (579)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (579)
.+..++..++.+ .......+.....+.|.+|++.|+++.|+.+....+|..++|.+.|.+.+..||++.|
T Consensus 98 ---------~~~l~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f 167 (471)
T PRK10504 98 ---------LNELLLARVLQG-VGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIF 167 (471)
T ss_pred ---------HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHH
Confidence 111222222222 2222234555677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCC
Q 008060 525 LIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~ 545 (579)
.+...+..+..+......|+.
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 998887777777666655554
No 172
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.18 E-value=5.1e-10 Score=116.92 Aligned_cols=166 Identities=16% Similarity=0.093 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008060 291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS 370 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (579)
.........|.+.++.+. +....++......++..++.++.|+++||+|||+++..+..+.+++.++.....+
T Consensus 18 ~~~~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~------ 90 (382)
T PRK10091 18 AEFGIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS------ 90 (382)
T ss_pred hHHHHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc------
Confidence 344555567777777666 5566788888889999999999999999999999999998888887776655321
Q ss_pred CccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCC
Q 008060 371 PMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP 450 (579)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (579)
T Consensus 91 -------------------------------------------------------------------------------- 90 (382)
T PRK10091 91 -------------------------------------------------------------------------------- 90 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 008060 451 SKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVI 530 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~ 530 (579)
.+..++...+.+.+.+ ...+.......|.+|+++|+.++|+......++..++|.+.+.+.+..||++.|.+.+++
T Consensus 91 ---~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 91 ---YLMLAIGRLVSGFPHG-AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred ---HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 1222333222222222 123344467788899999999999999999999999999999999989999999999988
Q ss_pred HHHHHHHhhhhccCCCC
Q 008060 531 SVAALLFVLIFVPETKG 547 (579)
Q Consensus 531 ~~~~~~~~~~~~~~~~~ 547 (579)
.++..+..++.+||.++
T Consensus 167 ~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 167 NIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 87777666666777543
No 173
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.18 E-value=1.1e-09 Score=117.83 Aligned_cols=167 Identities=12% Similarity=0.002 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060 285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
++..+........+.|.+.++.+. +..+.++......++.+++.++.|+++||+|||+++..+.++..++.++.....+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s 123 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS 123 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344445555566777777766 5556677777788888999999999999999999988887777776665544321
Q ss_pred ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060 365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (579)
T Consensus 124 -------------------------------------------------------------------------------- 123 (476)
T PLN00028 124 -------------------------------------------------------------------------------- 123 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH--------
Q 008060 445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ-------- 516 (579)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~-------- 516 (579)
.+..++..++.+.+.+ +.. ....+++|.+|++.||.++|+.+....+|+.+++.+.+.+.+
T Consensus 124 ---------~~~l~~~r~l~G~~~~-~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 192 (476)
T PLN00028 124 ---------ATGFIAVRFFIGFSLA-TFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP 192 (476)
T ss_pred ---------HHHHHHHHHHHHHHHH-hhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111222222222221 222 233467899999999999999998888888888776655432
Q ss_pred -hcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 517 -AIGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 517 -~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
..||++.|++.+++.++..++.+++.+
T Consensus 193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 193 SFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 148999999999988877766555443
No 174
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.18 E-value=1.1e-09 Score=115.47 Aligned_cols=165 Identities=12% Similarity=-0.011 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060 292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP 371 (579)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
...+....|.+.++.+. +....++......++..++.++.|+++||+|||+++..+.....++.+......+
T Consensus 29 ~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------- 100 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNA-GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS------- 100 (406)
T ss_pred hhhHhcchHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 33444445666666665 5566777778888889999999999999999999998888777777666544311
Q ss_pred ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060 372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS 451 (579)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (579)
T Consensus 101 -------------------------------------------------------------------------------- 100 (406)
T PRK15402 101 -------------------------------------------------------------------------------- 100 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060 452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS 531 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (579)
.+..++...+.+...+ ...+.......|.+|++.|+...++......++..++|.+.+.+.+..+|++.|++.+++.
T Consensus 101 --~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~ 177 (406)
T PRK15402 101 --IEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA 177 (406)
T ss_pred --HHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 1111222222222221 2234456777899999999999999988888999999999999999899999999999888
Q ss_pred HHHHHHhhhhccCCCC
Q 008060 532 VAALLFVLIFVPETKG 547 (579)
Q Consensus 532 ~~~~~~~~~~~~~~~~ 547 (579)
++..+..++..||+++
T Consensus 178 ~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 178 ALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHhCCCCCc
Confidence 8877766666777654
No 175
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.18 E-value=1.1e-09 Score=117.61 Aligned_cols=163 Identities=18% Similarity=0.027 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHH
Q 008060 286 FQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAV 362 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..-.+++.+..++|.|+++. .+.+..+++.......++..++.+++|+++|| +|||+++..+..+.+++.+++...
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 334456777888899999875 44567788888888999999999999999999 899999999999988888766643
Q ss_pred hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060 363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (579)
.+
T Consensus 100 ~~------------------------------------------------------------------------------ 101 (475)
T TIGR00924 100 IY------------------------------------------------------------------------------ 101 (475)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008060 443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF---RGVCGGIAATANWISNLIVAQSFLSLTQAIG 519 (579)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g 519 (579)
.+...+...+. +.......+...++.++.+|++. |+.+.++.+...++|.+++|.+.+.+.+..|
T Consensus 102 -----------~~~~~~~~~l~-g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 102 -----------PDLIFYGLGTI-AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred -----------HhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11112222222 22222234555678888888754 8889999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHh
Q 008060 520 TSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~ 538 (579)
|++.|.+.++..+++.+..
T Consensus 170 ~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 170 YHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999998887666665443
No 176
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.18 E-value=7.3e-10 Score=116.95 Aligned_cols=158 Identities=15% Similarity=0.015 Sum_probs=117.4
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 008060 299 SPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET 378 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (579)
+|.+.++.+. +............++..++.+..|+++||+|||+++..+..+..++.++.....+
T Consensus 39 l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-------------- 103 (413)
T PRK15403 39 IINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS-------------- 103 (413)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------------
Confidence 4455555555 5566677778888889999999999999999999999888877777666554311
Q ss_pred cccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHH
Q 008060 379 SHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLAL 458 (579)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (579)
.+..+
T Consensus 104 ---------------------------------------------------------------------------~~~l~ 108 (413)
T PRK15403 104 ---------------------------------------------------------------------------MTQFL 108 (413)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11222
Q ss_pred HHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060 459 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
+.-++.+.+.+ ...+.......|.+|++.++..+++.+....++..++|.+.+.+.+..||++.|++.+++.++..++.
T Consensus 109 ~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 109 IARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 22223222222 22334456788999999999999999999999999999999999988899999999999888887766
Q ss_pred hhhccCCCC
Q 008060 539 LIFVPETKG 547 (579)
Q Consensus 539 ~~~~~~~~~ 547 (579)
++.+||+++
T Consensus 188 ~~~lp~~~~ 196 (413)
T PRK15403 188 LLAMPETVK 196 (413)
T ss_pred HHhCCCCcc
Confidence 666788654
No 177
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.17 E-value=4.2e-10 Score=121.69 Aligned_cols=177 Identities=16% Similarity=-0.005 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060 279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV 358 (579)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 358 (579)
..+.+..+....-...+..-.|.+.++.+. +....++....+.++..++.+..|+++||+|||+++..+..+..++.++
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334444444455555566668888877765 5556778888888888899999999999999999999999988888877
Q ss_pred HHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccc
Q 008060 359 LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCH 438 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (579)
.....+
T Consensus 88 ~~~a~~-------------------------------------------------------------------------- 93 (495)
T PRK14995 88 AAFSPT-------------------------------------------------------------------------- 93 (495)
T ss_pred HHHcCC--------------------------------------------------------------------------
Confidence 665421
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 439 DESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEI-YPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA 517 (579)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~ 517 (579)
.+..++.-.+.+.+.+ +..+.......+. .|++.|+.++|+......+|..++|.+.+.+.+.
T Consensus 94 ---------------~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 94 ---------------ASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred ---------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1222333333333322 2333333444454 4778999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 518 IGTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 518 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
.||++.|++...+.++..++.++.+|+.+
T Consensus 158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 158 FYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999988888887777767777653
No 178
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.17 E-value=3.5e-10 Score=117.77 Aligned_cols=162 Identities=14% Similarity=0.003 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 008060 294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV 373 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (579)
......|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++..++....+
T Consensus 9 ~~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~--------- 78 (377)
T PRK11102 9 MYLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT--------- 78 (377)
T ss_pred HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 344556777777665 5667788888888999999999999999999999999988888887777655321
Q ss_pred ccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCc
Q 008060 374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKF 453 (579)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (579)
T Consensus 79 -------------------------------------------------------------------------------- 78 (377)
T PRK11102 79 -------------------------------------------------------------------------------- 78 (377)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA 533 (579)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 533 (579)
.+...+...+.+ .+.....+...++..|.+|++.|++++++.+....+|..++|.+.+.+.+..||++.|++.+++.++
T Consensus 79 ~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 157 (377)
T PRK11102 79 IDQLIYMRFLHG-LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL 157 (377)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 112222222222 2222233455678889999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhhhhccCCC
Q 008060 534 ALLFVLIFVPETK 546 (579)
Q Consensus 534 ~~~~~~~~~~~~~ 546 (579)
..++..+..||++
T Consensus 158 ~~~~~~~~~~~~~ 170 (377)
T PRK11102 158 AAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHhCCccC
Confidence 7777666677654
No 179
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.16 E-value=1.2e-09 Score=114.66 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
|.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+...+++.+.+++.+++.|++.+........+..+..
T Consensus 257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 336 (396)
T TIGR00882 257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888999999999999999999999999999999988888888899999999999999988776666777788888
Q ss_pred Ccccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 152 p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
+++.|+...+. ++....+|..+++.++|++.+..| |+..|.+.+++.++..++
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence 88888877766 678899999999999999999887 999999988877666554
No 180
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.16 E-value=6.8e-10 Score=115.07 Aligned_cols=164 Identities=15% Similarity=0.039 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060 292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP 371 (579)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
+..+....|.+.++.+. +..+.+++.....++..++.+..|+++||+|||+++.........+.... ...+
T Consensus 7 ~~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~~------- 77 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LDPF------- 77 (368)
T ss_pred HHHHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HHhc-------
Confidence 44555667888777776 56677888888889999999999999999999987655444333332211 1101
Q ss_pred ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060 372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS 451 (579)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (579)
T Consensus 78 -------------------------------------------------------------------------------- 77 (368)
T TIGR00903 78 -------------------------------------------------------------------------------- 77 (368)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060 452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS 531 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (579)
..+..++.-.+.+.+ .+.........+|.+|+++|++++++.+....+|..+++.+.+.+.+..||++.|.+.+++.
T Consensus 78 -~~~~l~~~R~l~G~g--~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~ 154 (368)
T TIGR00903 78 -NYEWLLACQLLAALG--QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA 154 (368)
T ss_pred -cHHHHHHHHHHHHhH--hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 011112222222222 22223334555889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhhccCCCC
Q 008060 532 VAALLFVLIFVPETKG 547 (579)
Q Consensus 532 ~~~~~~~~~~~~~~~~ 547 (579)
++..++.++.+||.++
T Consensus 155 ~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 155 AAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8887777777887643
No 181
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.4e-08 Score=103.87 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc
Q 008060 75 VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAK 154 (579)
Q Consensus 75 ~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~ 154 (579)
.++.+..+.+++++.+.+.|+.|+|+.+.++...+.+..+.+-+ .|-+.+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67788888999999999999999999999999999887777655 45667788899999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhccCcC--------cchhHH----------HHhhHHHHH---HHHHHHhccCCh
Q 008060 155 IRGALVSTNGFLITSGQFLSYLINLAFTRAPG--------TWRWML----------GVAGIPALL---QFILMLLLPESP 213 (579)
Q Consensus 155 ~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~--------~Wr~~f----------~i~~i~~l~---~~i~~~~lpesp 213 (579)
.+.+..++..+....+.++|..+...+..... .-|+.+ .+.+++..+ ..+...+.|..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~- 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK- 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-
Confidence 99999999988888888888766654432211 111111 111111111 11111111111
Q ss_pred hHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHH
Q 008060 214 RWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGIN 293 (579)
Q Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (579)
. ...+. +.. ++......+...+++++++........+...+ ...
T Consensus 214 ~------~~~~~------------------------~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~-----~~S 257 (461)
T KOG3098|consen 214 D------VVNCK------------------------SSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGL-----ETS 257 (461)
T ss_pred c------hhhhh------------------------hhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHH-----HHH
Confidence 0 00000 000 00111112344556666655332222222111 112
Q ss_pred HHHHHHHHHH---HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060 294 TVMYYSPTIV---QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR---TGRKKLLVISLSGVILSLGVLSAVFH 364 (579)
Q Consensus 294 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
......|..+ ...+..+....++.....+++.+++....+.+.+| +||+++..++..+..++.++.....+
T Consensus 258 f~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p 334 (461)
T KOG3098|consen 258 FWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP 334 (461)
T ss_pred HHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc
Confidence 2222223332 24455566667777788888889999999888876 57888888887777776666655444
No 182
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.15 E-value=1.1e-09 Score=117.70 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=134.8
Q ss_pred hhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 008060 50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG 128 (579)
Q Consensus 50 ~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~ 128 (579)
+..++|.+. +++|.+.... |++.+.+.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+..++.
T Consensus 237 ~~aLlPl~a~~~l~~~a~~y---Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~ 313 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGY---GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA 313 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344567665 5688877777 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
.++.|++.........+.+.+..|++.|||+++++.+....+..+|.++.|.+.+..+ -+..+.+.++..++..++
T Consensus 314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999999999999999887 888888777655544444
No 183
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.15 E-value=1.6e-09 Score=115.31 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=140.6
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccch--HHHHHHHHHHHHHHHHHHh------
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVADFLFFVGAVIMAA------ 118 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr--~vl~~~~~l~~i~~ll~~~------ 118 (579)
.++++.......+++|.+..+. ..+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+
T Consensus 298 ~ti~~~~~i~a~~~lg~s~~~l---~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~ 374 (477)
T PF11700_consen 298 NTIISFAGIYATEVLGMSTTQL---IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF 374 (477)
T ss_pred HHHHHHHHHHHHHhcCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344455556677999999887 7777777888889999999999999999 8988888888665555555
Q ss_pred --cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhh
Q 008060 119 --APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG 196 (579)
Q Consensus 119 --a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~ 196 (579)
.++-+.+.+.-++.|++.|..++...++.++..|+++.+..+|++....-....+||++.+.+.+..++-|+.++...
T Consensus 375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~ 454 (477)
T PF11700_consen 375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLL 454 (477)
T ss_pred cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 678888999999999999999999999999999999999999999999999999999999999998888999999888
Q ss_pred HHHHHHHHHHHhccCC
Q 008060 197 IPALLQFILMLLLPES 212 (579)
Q Consensus 197 i~~l~~~i~~~~lpes 212 (579)
++.++.+++++.++.+
T Consensus 455 ~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 455 VLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHHHhhccch
Confidence 8888888877777554
No 184
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.15 E-value=1.3e-09 Score=118.29 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=109.0
Q ss_pred hhhhhhhhhhhcccccchhh--------HHHH-HHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc
Q 008060 50 ISGALLYIRDDFKSVDRKTL--------LQES-IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120 (579)
Q Consensus 50 ~~~~lp~i~~~~~~s~~~~~--------~~g~-l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~ 120 (579)
.....|.+.++.|.+..... .... ...+..++..++.++.++++||+|||++++++..+.+++.++.++..
T Consensus 307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33346777777776543210 0011 23344556667888999999999999999888887777766555432
Q ss_pred h----hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC---------c
Q 008060 121 N----PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG---------T 187 (579)
Q Consensus 121 ~----~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~---------~ 187 (579)
+ ...+...-+...++.....+....+.+|.+|.+.|++++++.+....+|.++++.+.+.+.+..+ +
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 1 11111111111222222345566778999999999999999999999999999999998877421 2
Q ss_pred chhHHHHhhHHHHHHHHHHHhccCCh
Q 008060 188 WRWMLGVAGIPALLQFILMLLLPESP 213 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~~~~lpesp 213 (579)
+...|++.+++.++..+..+++||+.
T Consensus 467 ~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chHHHHHHHHHHHHHHHHheEeccCC
Confidence 45677777777776666666779983
No 185
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.14 E-value=1.3e-09 Score=116.48 Aligned_cols=157 Identities=19% Similarity=0.137 Sum_probs=108.4
Q ss_pred hhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc--cchHHH-HHHHHHHHHHHHHHHh--cch
Q 008060 48 GVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSI-LVADFLFFVGAVIMAA--APN 121 (579)
Q Consensus 48 ~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~--Grr~vl-~~~~~l~~i~~ll~~~--a~~ 121 (579)
......+|.+. ++.|.+..+. +++...+.++..++.++.|+++||+ |||+.. +....+..++.++..+ ..+
T Consensus 270 ~~~~~~~P~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~ 346 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN 346 (452)
T ss_pred HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC
Confidence 33445666654 4578777666 8888889999999999999999999 555432 2222333333332222 334
Q ss_pred hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHH-HHHHHHHHhccCcCcchhHHHHhhHHHH
Q 008060 122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF-LSYLINLAFTRAPGTWRWMLGVAGIPAL 200 (579)
Q Consensus 122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~-ig~~l~~~l~~~~~~Wr~~f~i~~i~~l 200 (579)
.+...+..++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.+..+ |+..|++.++.++
T Consensus 347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~ 425 (452)
T PRK11273 347 PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSI 425 (452)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHH
Confidence 444555555556543333333345678999999999999999888888765 47999999999887 9999998888777
Q ss_pred HHHHHHHh
Q 008060 201 LQFILMLL 208 (579)
Q Consensus 201 ~~~i~~~~ 208 (579)
+.++....
T Consensus 426 ~~~~~~~~ 433 (452)
T PRK11273 426 LAVILLIV 433 (452)
T ss_pred HHHHHHHH
Confidence 77666443
No 186
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.13 E-value=2.5e-09 Score=112.21 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 008060 294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV 373 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (579)
......|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++.+......+
T Consensus 26 ~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------- 95 (394)
T PRK11652 26 IYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS--------- 95 (394)
T ss_pred HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 333446777777666 5667788888888999999999999999999999998888877777666544211
Q ss_pred ccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCc
Q 008060 374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKF 453 (579)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (579)
T Consensus 96 -------------------------------------------------------------------------------- 95 (394)
T PRK11652 96 -------------------------------------------------------------------------------- 95 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA 533 (579)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 533 (579)
.+..++...+.+.+.+ ...+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+..||++.|.+.+++.++
T Consensus 96 ~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~ 174 (394)
T PRK11652 96 LTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG 174 (394)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 1111222222222211 122334456678888889999999999999999999999999999989999999998887776
Q ss_pred HHHHhhhhccCCCC
Q 008060 534 ALLFVLIFVPETKG 547 (579)
Q Consensus 534 ~~~~~~~~~~~~~~ 547 (579)
..++..+..||++.
T Consensus 175 ~~~~~~~~~~~~~~ 188 (394)
T PRK11652 175 VTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHhCCccCc
Confidence 66655566777543
No 187
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.13 E-value=2.2e-09 Score=111.09 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHh-c
Q 008060 286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF-H 364 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 364 (579)
+..+........+.|.++++..+.+....+++.....++.+++.++.|+++||+|||+.+..+..+..++.+++.... +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~ 90 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS 90 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555666777788656555555777888888999999999999999999999999999999988888877766542 1
Q ss_pred ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060 365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (579)
T Consensus 91 -------------------------------------------------------------------------------- 90 (366)
T TIGR00886 91 -------------------------------------------------------------------------------- 90 (366)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 008060 445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA------- 517 (579)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~------- 517 (579)
.+..++..++.+.. . +..+....+++|.+|+++|+.++++......+|..+++.+.+.+.+.
T Consensus 91 ---------~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 91 ---------YSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred ---------HHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11222332332222 2 23334457888999999999999999988888888888877776653
Q ss_pred ---cccchhh-HHHHHHHHHHHHHhhhhccCC
Q 008060 518 ---IGTSWTF-LIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 518 ---~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 545 (579)
.+|++.| +..+++..+..++.+...+|.
T Consensus 160 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 160 PAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 3788888 444555555444444445543
No 188
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.12 E-value=2e-09 Score=114.04 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=100.9
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHH
Q 008060 51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITG 128 (579)
Q Consensus 51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~ 128 (579)
...+|.+.++.|.+.... +.+.+.+.++..++.++.|+++||+|||+.+..+.++.++..++....+ +...+.+.
T Consensus 251 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (426)
T PRK12307 251 FGLLPTYLAGEGFDTGVV---SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC 327 (426)
T ss_pred HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 345566666677766666 8888899999999999999999999999999888877766655544332 22222222
Q ss_pred HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW 190 (579)
Q Consensus 129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~ 190 (579)
.+..+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~ 388 (426)
T PRK12307 328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGA 388 (426)
T ss_pred HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHH
Confidence 2222333333345566788999999999999999999999999999999999988766 544
No 189
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.11 E-value=4.4e-09 Score=110.27 Aligned_cols=180 Identities=16% Similarity=0.074 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF 107 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~ 107 (579)
.|+...+.+.+......-+...+......+-++-|++.++. .++.....+...+..+++..+.||+|||+.++.+..
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a---~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~ 343 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEA---QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS 343 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34444444444433344444555556667888889988888 777888888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcc---hhh------HHHHHHHHHHhhchh-hhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHH
Q 008060 108 LFFVGAVIMAAAP---NPG------ALITGRVFVGLGVGM-ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177 (579)
Q Consensus 108 l~~i~~ll~~~a~---~~~------~ll~~R~l~Gig~g~-~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l 177 (579)
+..+..+++...- +.. ..+++.++..++.+. .-|...-+.+|.+|++.|+.++++..+...+...+-...
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~ 423 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA 423 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888766531 111 123333333333222 357778899999999999999999988888888887777
Q ss_pred HHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060 178 NLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES 212 (579)
Q Consensus 178 ~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes 212 (579)
-..+.+..|+ +.|++..+++++..+. ++.+|||
T Consensus 424 fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 424 FPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence 7777777663 7777777777776665 7889999
No 190
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.11 E-value=4.3e-09 Score=111.88 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhchhhhhhHhHhhhhc
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-PNPGALITGRVFVGLGVGMASMTSPLYISEA 150 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a-~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~ 150 (579)
+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777788899999999999999999999999999998888887777665 4667777888899999999999999999888
Q ss_pred CC-------cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 151 SP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 151 ~p-------~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
.+ ++++|.++++.+....+|..+++.+.+.+.+..|
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65 4567999999999999999999999999887554
No 191
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.10 E-value=3.9e-09 Score=113.99 Aligned_cols=160 Identities=13% Similarity=0.004 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhccc
Q 008060 288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHET 366 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
...+++.+..+++.|+++..+.+...+...............+++|+++|| +|||+.+..+..+..++..++....+
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~-- 110 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH-- 110 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 344567777888999866555566555555555544445555789999999 59999999999888888766654311
Q ss_pred CCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccc
Q 008060 367 TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYT 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (579)
T Consensus 111 -------------------------------------------------------------------------------- 110 (500)
T PRK09584 111 -------------------------------------------------------------------------------- 110 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060 447 RGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF--RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF 524 (579)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (579)
..+...+...+.+.+.+ ...+...++..|.+|++. |+.+.++.++..++|.+++|.+.|++.+..||++.|
T Consensus 111 ------~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F 183 (500)
T PRK09584 111 ------DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF 183 (500)
T ss_pred ------cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 01111222222222222 234455578899997643 456788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008060 525 LIFGVISVAALL 536 (579)
Q Consensus 525 ~~~~~~~~~~~~ 536 (579)
.+.++..+++.+
T Consensus 184 ~i~~i~~~i~~i 195 (500)
T PRK09584 184 ALSVVGMLITVV 195 (500)
T ss_pred HHHHHHHHHHHH
Confidence 988765555543
No 192
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.09 E-value=4.7e-09 Score=112.90 Aligned_cols=160 Identities=16% Similarity=0.045 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhccc
Q 008060 288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHET 366 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.-.+++.+..+++.|+++..+.+...+.++.........+..+++|+++|| +|||+++..+.++..++.+++......
T Consensus 26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~- 104 (489)
T PRK10207 26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK- 104 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 345677777888888877666566667777666666677778899999999 999999999999999988777653210
Q ss_pred CCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccc
Q 008060 367 TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYT 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (579)
T Consensus 105 -------------------------------------------------------------------------------- 104 (489)
T PRK10207 105 -------------------------------------------------------------------------------- 104 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060 447 RGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR--FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF 524 (579)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (579)
.....+...+. +.....+.+...+++.|.+|++ .|+.++++.+...++|.+++|.+.|++.++.||++.|
T Consensus 105 -------~~ll~~~~~l~-~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F 176 (489)
T PRK10207 105 -------PDLIFIALGTI-AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTY 176 (489)
T ss_pred -------hhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 01111222222 2222333455568899999887 4578899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008060 525 LIFGVISVAALL 536 (579)
Q Consensus 525 ~~~~~~~~~~~~ 536 (579)
++.++..+++.+
T Consensus 177 ~i~~i~~~~~~~ 188 (489)
T PRK10207 177 NLCGAGLIIALL 188 (489)
T ss_pred HHHHHHHHHHHH
Confidence 886654444433
No 193
>PRK11043 putative transporter; Provisional
Probab=99.08 E-value=7.5e-09 Score=108.81 Aligned_cols=153 Identities=16% Similarity=-0.043 Sum_probs=110.7
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 008060 299 SPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET 378 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (579)
.|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....+
T Consensus 29 ~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------- 93 (401)
T PRK11043 29 FKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES-------------- 93 (401)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence 3444555555 6677888888889999999999999999999999998888777776665544311
Q ss_pred cccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHH
Q 008060 379 SHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLAL 458 (579)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (579)
.+..+
T Consensus 94 ---------------------------------------------------------------------------~~~l~ 98 (401)
T PRK11043 94 ---------------------------------------------------------------------------AAQLL 98 (401)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11122
Q ss_pred HHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060 459 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
+...+.+.+.+ ...+.......|.+|++.++...+..+....++..++|.+.+.+.+..||++.|++.+++.++..+..
T Consensus 99 ~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 99 VLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred HHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 22222222111 11233346778899998888899999888899999999999999999999999999888888776665
Q ss_pred hhhc
Q 008060 539 LIFV 542 (579)
Q Consensus 539 ~~~~ 542 (579)
+++.
T Consensus 178 ~~~~ 181 (401)
T PRK11043 178 LRLK 181 (401)
T ss_pred HHcC
Confidence 4433
No 194
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.07 E-value=1.9e-09 Score=115.65 Aligned_cols=148 Identities=15% Similarity=0.019 Sum_probs=113.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCC
Q 008060 309 ASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPD 388 (579)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (579)
.+....+++.....++.+++.+..|+++||+|||+.+..+.++..++.++.......
T Consensus 73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----------------------- 129 (465)
T TIGR00894 73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG----------------------- 129 (465)
T ss_pred CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-----------------------
Confidence 356667888888899999999999999999999999988887777766554433210
Q ss_pred CccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhh
Q 008060 389 YSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFF 468 (579)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (579)
.+..++..-++.+..
T Consensus 130 -----------------------------------------------------------------~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 130 -----------------------------------------------------------------GIALVVFCRVIQGLA 144 (465)
T ss_pred -----------------------------------------------------------------CchHHHHHHHHHHHh
Confidence 111133333334444
Q ss_pred ccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHHHHhhhhccC
Q 008060 469 SPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA-IGTSWTFLIFGVISVAALLFVLIFVPE 544 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (579)
.....+....++.|.+|++.|+.++|+.+....+|.+++|.+.+.+.+. .||+..|.+.+++.++..++.+.+.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 4444566678999999999999999999999999999999999999988 499999999998887776665555554
No 195
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.05 E-value=9.7e-09 Score=107.57 Aligned_cols=149 Identities=16% Similarity=0.070 Sum_probs=112.8
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHH-HHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh------cchhhHH
Q 008060 53 ALLYIRDDFKSVDRKTLLQESIVSMAV-AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA------APNPGAL 125 (579)
Q Consensus 53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~-lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~------a~~~~~l 125 (579)
..+.+.+|.|.+.++. |++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+
T Consensus 230 ~~~~~l~~~G~s~~~i---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWI---GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA 306 (390)
T ss_pred HhhHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence 3445556689888877 88887775 466677899999999999999988877665333332221 2333444
Q ss_pred HHHHHHHHhhchhhhhhHhHhhhhcCCc-ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060 126 ITGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204 (579)
Q Consensus 126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~-~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i 204 (579)
.....+.+++.+...+.....+.+..++ +++++.+++.+...++|..+||.++|.+.+..+ |+..|+..+++.++..+
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence 5555666777787778888887788776 788999999999999999999999999998877 99999888876666544
Q ss_pred H
Q 008060 205 L 205 (579)
Q Consensus 205 ~ 205 (579)
.
T Consensus 386 ~ 386 (390)
T TIGR02718 386 L 386 (390)
T ss_pred H
Confidence 3
No 196
>TIGR00898 2A0119 cation transport protein.
Probab=99.05 E-value=3.7e-09 Score=114.75 Aligned_cols=137 Identities=23% Similarity=0.182 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 74 IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP--GALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 74 l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~--~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
...+..+...++.++.++++||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344556677888999999999999999999999999888888776654 45555667777777778888889999999
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060 152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP 213 (579)
Q Consensus 152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp 213 (579)
|++.|+.++|+.+....+|.+++|.+.+ +.+. ++...+.+.+...++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999998 4333 367788888877777777777888873
No 197
>PRK15075 citrate-proton symporter; Provisional
Probab=99.03 E-value=9.5e-09 Score=109.29 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=99.8
Q ss_pred hhhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH-HH---Hhcch
Q 008060 47 TGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV-IM---AAAPN 121 (579)
Q Consensus 47 ~~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l-l~---~~a~~ 121 (579)
........|.+. +.+|.+..+. ++....+.++..++.+++|+++||+|||++++.+..+..+..+ .. ...++
T Consensus 254 ~~~~~~~~p~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (434)
T PRK15075 254 FYLITVYTPTFGKTVLHLSAADS---LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS 330 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334445566654 4478877776 8888888899999999999999999999998776544332221 11 12344
Q ss_pred hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHH-HHHHHHHHHHHHHHHhccCcCcch
Q 008060 122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
+..+.+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+++.+..+ ++
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g-~~ 398 (434)
T PRK15075 331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG-DK 398 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC-Cc
Confidence 44455556666777776677677889999999999999998544 444557789999999988776 54
No 198
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.01 E-value=1.3e-08 Score=102.71 Aligned_cols=167 Identities=16% Similarity=0.076 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060 288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT 367 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
.|..+.......+.+-++.+. +..+.+++.....+.+.+.++..|.+.||+|.|++...+.+++.+-.+.+......++
T Consensus 26 ~F~VW~l~s~l~~~i~~~~~L-S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~ 104 (417)
T COG2223 26 GFMVWTLFSPLGVFIKSDFGL-SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS 104 (417)
T ss_pred HHHHHHHHHHHHhhhccccCC-CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 344445554455555555555 6677788888888889999999999999999999999999888888877777654221
Q ss_pred CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060 368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR 447 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
T Consensus 105 -------------------------------------------------------------------------------- 104 (417)
T COG2223 105 -------------------------------------------------------------------------------- 104 (417)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhh
Q 008060 448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG---TSWTF 524 (579)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g---~~~~~ 524 (579)
...++.+.++.+..+ +........+++.||++.+|.++|+.. .+++|..+...+.+.+....| |+.+.
T Consensus 105 -------~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 105 -------TWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred -------hHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111333333333333 334455689999999999999999999 999999999999999999988 89899
Q ss_pred HHHHHHHHHHHHHhhhhccC
Q 008060 525 LIFGVISVAALLFVLIFVPE 544 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~ 544 (579)
.+..+..++..+..++...+
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99888888888887776543
No 199
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.01 E-value=1.5e-08 Score=107.70 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=100.5
Q ss_pred hhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHH----hcchhhHH
Q 008060 51 SGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA----AAPNPGAL 125 (579)
Q Consensus 51 ~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~----~a~~~~~l 125 (579)
...+|. +.+++|.+..+. +...++..++..+++++.|+++||+|||+++.++.++.++..+... ..++....
T Consensus 263 ~~~lp~~l~~~~g~s~~~~---~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVA---SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA 339 (432)
T ss_pred HHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 344555 456678877666 7888888888889999999999999999988776554433332111 12233322
Q ss_pred HHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060 126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204 (579)
Q Consensus 126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i 204 (579)
+..-.+.+.+.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ..++|...+++.++..++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFL 418 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHH
Confidence 22222233333444455667889999999999999997765443 3444777777553 334476677766666666665
Q ss_pred HHHhccC
Q 008060 205 LMLLLPE 211 (579)
Q Consensus 205 ~~~~lpe 211 (579)
..+++++
T Consensus 419 ~~~~l~~ 425 (432)
T PRK10406 419 VSLMLHR 425 (432)
T ss_pred HHHHhhh
Confidence 5555443
No 200
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.01 E-value=3.1e-09 Score=113.80 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc--chHHHHHHHHH
Q 008060 31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG--RRTSILVADFL 108 (579)
Q Consensus 31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G--rr~vl~~~~~l 108 (579)
+....+++......+...+....+|.+.++.+.+..+. ..+.++..+...++.++.|+++|+.. ++.+..+++++
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a---a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~ 374 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA---AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI 374 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh---HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence 34556666677777778888888999999999988888 99999999999999999999999998 45567788888
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060 109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW 188 (579)
Q Consensus 109 ~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W 188 (579)
.+++.+.++++++++.+...-.+.|++.|........++.|....++-..+.|+.....+++..+||++++++.+..++|
T Consensus 375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y 454 (509)
T KOG2504|consen 375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY 454 (509)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence 89999999999999999999999999999988888889999999999999999999999999999999999999998889
Q ss_pred hhHHHHhhHHHHHHHHHHHhcc
Q 008060 189 RWMLGVAGIPALLQFILMLLLP 210 (579)
Q Consensus 189 r~~f~i~~i~~l~~~i~~~~lp 210 (579)
...|+..++..++....++..+
T Consensus 455 ~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 455 DHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeehhhcChHHHHHHHHHHHhH
Confidence 9999999998888887777765
No 201
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.99 E-value=6e-09 Score=105.08 Aligned_cols=177 Identities=17% Similarity=0.217 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
..+++.-..+.++.+. +++.....-.+++|++..+. .++.....+..+++++++|+|.||+|.|+++..+++++.+
T Consensus 255 ~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l---ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 255 VLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL---LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI 330 (438)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence 3444444445555433 33333334456999998888 7777777778889999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
.++..-+...-..+.++-.+.|.+.|..+..+.++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..++-|..
T Consensus 331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g 410 (438)
T COG2270 331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG 410 (438)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence 88888887777777788899999999999999999999999999999999999999999999999999999998888998
Q ss_pred HHHhhHHHHHHHHHHHhccCC
Q 008060 192 LGVAGIPALLQFILMLLLPES 212 (579)
Q Consensus 192 f~i~~i~~l~~~i~~~~lpes 212 (579)
+....++..+.+++++.+|+.
T Consensus 411 ~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 411 VLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhhHhhEEeecCC
Confidence 888887777777777767654
No 202
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.99 E-value=3e-08 Score=104.34 Aligned_cols=178 Identities=12% Similarity=0.028 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 008060 281 VGLQVFQQFVGINTVMYYSPTIVQ-LSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 359 (579)
..+.+...|..+.......+.+-+ +.+. +..+.+++.....++..+.++..|+++||+|.|+++..+..+..+..+.+
T Consensus 39 s~~~f~~~F~~w~~~~~l~~~~~~~~~~l-s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~ 117 (462)
T PRK15034 39 SVSCLLLAFCVWMLFSAVTVNLNKIGFNF-TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWL 117 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555 4444 66677777787888888999999999999999999998888887777766
Q ss_pred HHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccc
Q 008060 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHD 439 (579)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (579)
.+..++..+
T Consensus 118 ~~a~~~~~~----------------------------------------------------------------------- 126 (462)
T PRK15034 118 GIAVQNPNT----------------------------------------------------------------------- 126 (462)
T ss_pred HHHHcccCC-----------------------------------------------------------------------
Confidence 654221100
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH----
Q 008060 440 ESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT---- 515 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~---- 515 (579)
++..++++.++.+..+ +..+.....+++.+|+++||+++|+....+++|..+++.+.+.+.
T Consensus 127 --------------s~~~lli~r~l~Gigg-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 127 --------------PFGIFIVIALLCGFAG-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred --------------CHHHHHHHHHHHHHHH-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1222333333333322 234455678899999999999999998777788776666555433
Q ss_pred -Hh-------------cccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 516 -QA-------------IGTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 516 -~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
+. .+++.+.++.+++.++..++.+++.++.
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 32 2355566677777777776666665543
No 203
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.99 E-value=1.6e-08 Score=97.41 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060 29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL 108 (579)
Q Consensus 29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l 108 (579)
||..+......+...+ ....++..-|.+++.+|.+..+. ..+.+...+|..+ .++.|.+.|++|++.++.+|.+.
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l---~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~ 75 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL---NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVL 75 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH---HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHH
Confidence 4666555555554444 55667788899999999999888 8888899999876 58899999999999999999999
Q ss_pred HHHHHHHHHhc-------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 109 FFVGAVIMAAA-------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 109 ~~i~~ll~~~a-------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
..+|..+...+ .++|.+.+..++.|.+.+.....+.....+.||. +||.+.|+.-...+++..+-..+...+
T Consensus 76 ~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 76 GFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 99988876542 4678888888888888777767777777788985 699999999999999988777666666
Q ss_pred ccCcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060 182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESP 213 (579)
Q Consensus 182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp 213 (579)
..... -+..+.....+.++.++...+++..|
T Consensus 155 f~~~~-~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 155 FGDDP-SSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred cCCCh-HHHHHHHHHHHHHHHHHHhhheeccC
Confidence 55422 44444444445555555555665443
No 204
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.98 E-value=2.4e-08 Score=105.02 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=106.3
Q ss_pred hhhhhhcccccchhhHHHHHHHHH-HHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH---Hhc-chhhHHHHHH
Q 008060 55 LYIRDDFKSVDRKTLLQESIVSMA-VAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAA-PNPGALITGR 129 (579)
Q Consensus 55 p~i~~~~~~s~~~~~~~g~l~s~~-~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~---~~a-~~~~~ll~~R 129 (579)
+.+.+++|.+..+. +++.+.. .++..++.+++|++.||+|||+.+..+..+..+..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~~~G~~~~~~---g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 234 TFLIRGAGFSAGEV---GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 45667788887777 8877654 45688999999999999999998877776665554333 344 4556555544
Q ss_pred ----HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 130 ----VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 130 ----~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
+..|++.+...+....++.+.+|.+++ ++++...++|..+++.++|.+.+..| |+..|.+.++++++..++
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence 345566666677777778888776544 45555667788777778999999888 999999999888777666
Q ss_pred HHhc
Q 008060 206 MLLL 209 (579)
Q Consensus 206 ~~~l 209 (579)
.+..
T Consensus 386 ~~~~ 389 (402)
T PRK11902 386 LWLM 389 (402)
T ss_pred HHHH
Confidence 5443
No 205
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.97 E-value=3.9e-09 Score=92.48 Aligned_cols=135 Identities=23% Similarity=0.207 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccc
Q 008060 321 TSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDC 400 (579)
Q Consensus 321 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (579)
..++.+++.++.+++.||++||+.+..+.....++.+.+....+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 50 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------------------------------------ 50 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence 45667888999999999999999988887777766665543211
Q ss_pred cccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceee
Q 008060 401 MKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVN 480 (579)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (579)
.+...+...+.....+ ...+....+.
T Consensus 51 -----------------------------------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~ 76 (141)
T TIGR00880 51 -----------------------------------------------------ITVLIIARFLQGFGAA-FALVAGAALI 76 (141)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHH-HHHHhHHHHH
Confidence 1222222223322222 2345566788
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 481 SEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 481 ~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
.|.+|++.|++.+++.+....+|..++|.+.+.+.+..+|++.+.+.+++.++..+..+++.||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999988999999999888888877776666653
No 206
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.96 E-value=8.1e-09 Score=106.67 Aligned_cols=137 Identities=20% Similarity=0.134 Sum_probs=108.3
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 008060 50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPNPGALITG 128 (579)
Q Consensus 50 ~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~ 128 (579)
....+|.+.++.|.+..+. +.+.+...++..+++++.|+++||+ +||+.+..+..+.+++.++..+..+..... .
T Consensus 216 ~~~~lp~~~~~~g~~~~~~---g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 291 (355)
T TIGR00896 216 LIGWLPAILISHGASAATA---GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W 291 (355)
T ss_pred HHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 3345676667778877776 9999999999999999999999999 567777788888888777777665433332 4
Q ss_pred HHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060 129 RVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW 190 (579)
Q Consensus 129 R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~ 190 (579)
-++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.+..++|.+
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 567899999999888777776554 56678889998888899999999999999988776654
No 207
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.96 E-value=2.8e-08 Score=104.67 Aligned_cols=158 Identities=16% Similarity=0.052 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 008060 293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPM 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (579)
.......|.+.++.+. +..+.+++.....++.+++++..|++.||+|||+++..+..+.+++.+++......+
T Consensus 20 ~~~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~------ 92 (410)
T TIGR00885 20 DITNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM------ 92 (410)
T ss_pred HhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence 3444566777666555 667788898999999999999999999999999999999999888877754432110
Q ss_pred cccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCC
Q 008060 373 VSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSK 452 (579)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (579)
T Consensus 93 -------------------------------------------------------------------------------- 92 (410)
T TIGR00885 93 -------------------------------------------------------------------------------- 92 (410)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 008060 453 FGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA--------------- 517 (579)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~--------------- 517 (579)
..+..++..++.+.+.+. ..+....++.+..|++.|+...++.+....+|..++|.+.+.+...
T Consensus 93 ~~~~~l~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~ 171 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSP 171 (410)
T ss_pred cHHHHHHHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCH
Confidence 011222222222222222 2334446777888999999999999999999999999998877532
Q ss_pred -----------cccchhhHHHHHHHHHHHHHh
Q 008060 518 -----------IGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 518 -----------~g~~~~~~~~~~~~~~~~~~~ 538 (579)
.+|+++|++.+++.++..++.
T Consensus 172 ~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 172 EELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889988888777665544
No 208
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.95 E-value=1.3e-08 Score=121.79 Aligned_cols=144 Identities=15% Similarity=0.241 Sum_probs=121.6
Q ss_pred hhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008060 55 LYIRDDFKSVDR-KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVG 133 (579)
Q Consensus 55 p~i~~~~~~s~~-~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~G 133 (579)
+.+.+++|.+.. .. +++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|
T Consensus 257 ~~~~~~~g~s~~~~~---g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (1146)
T PRK08633 257 AYAKEVLGLDNTFQV---QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG 333 (1146)
T ss_pred HHHHHHhCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345677888776 66 99999999999999999999999999999999998888888888888889998989999999
Q ss_pred hhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHH
Q 008060 134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL 201 (579)
Q Consensus 134 ig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~ 201 (579)
++.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+.....++...|++.+.+.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888877654321366666665554433
No 209
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.95 E-value=1.9e-08 Score=104.91 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=130.9
Q ss_pred HHHhhhhhhhhhhhhhhhhhhcc-cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060 40 GLLFGYDTGVISGALLYIRDDFK-SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA 118 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~~~~-~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~ 118 (579)
.++.+.....+....+...++.| .+.... +.+.++..+.-.+.-...+++..|+|.|++++++.+.+++=..+.+.
T Consensus 216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 216 AFLIGISHAAYYTFFSIYLQELGGYSGSTI---GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666677777 455555 77778888888888999999999999999999999999998888888
Q ss_pred c-chhhHHHHH----HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHH-HHHHHHHHHHHHHHHhccCcC-----c
Q 008060 119 A-PNPGALITG----RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPG-----T 187 (579)
Q Consensus 119 a-~~~~~ll~~----R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~~~-----~ 187 (579)
. ++.+...+. ..+.|+..+..+.....++.+..|++.|+++.+++.. ..++|..+|..++|++.+..+ .
T Consensus 293 ~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~ 372 (400)
T PF03825_consen 293 FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFD 372 (400)
T ss_pred hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence 7 555444333 4569999999999999999999999999999999876 478999999999999998765 2
Q ss_pred chhHHHHhhHHHHHHHHH-HHhccCC
Q 008060 188 WRWMLGVAGIPALLQFIL-MLLLPES 212 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~-~~~lpes 212 (579)
|...+.+.+.+.++..++ +.+++|+
T Consensus 373 ~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 373 WSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 555666666655555555 4445543
No 210
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.95 E-value=3.4e-08 Score=99.87 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=105.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhh
Q 008060 61 FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140 (579)
Q Consensus 61 ~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~ 140 (579)
+|.+..+. ++..+.+..+..++.++.+++.||+|+|+++.++..+..++.++....++... ...-++.|++.+..+
T Consensus 173 ~g~s~~~a---~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~ 248 (310)
T TIGR01272 173 LGLPEDQA---AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMF 248 (310)
T ss_pred CCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHH
Confidence 68887777 99999999999999999999999999999998888888877766666554433 345568899999999
Q ss_pred hhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhH
Q 008060 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI 197 (579)
Q Consensus 141 ~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i 197 (579)
|...+...+.+|++ .+.+.++. ....+|.++.|.+.|.+.|..+ .+..|++..+
T Consensus 249 P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~~ 302 (310)
T TIGR01272 249 PTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPVP 302 (310)
T ss_pred HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHHH
Confidence 99999998988865 45666665 5667899999999999999777 7888774443
No 211
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.94 E-value=7.1e-10 Score=112.61 Aligned_cols=160 Identities=18% Similarity=0.084 Sum_probs=128.7
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCC
Q 008060 305 LSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNL 384 (579)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (579)
+..+.+....+++.....++..++++++|++.||++||+++.+|..+..++.+.-.+..+
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~-------------------- 120 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH-------------------- 120 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH--------------------
Confidence 344456677789999999999999999999999999999999999999888887776633
Q ss_pred CCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHH
Q 008060 385 TCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALY 464 (579)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (579)
-|..++.- .+
T Consensus 121 ---------------------------------------------------------------------Fwq~~l~R-~~ 130 (493)
T KOG1330|consen 121 ---------------------------------------------------------------------FWQVLLCR-GF 130 (493)
T ss_pred ---------------------------------------------------------------------HHHHHHHH-HH
Confidence 23223322 23
Q ss_pred HHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhcc
Q 008060 465 IIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
.+..-....|+..++++|.+|...|+.++++.+++..+|..+|-+..+.+.+..+ |+++|...+++.++.+++..++.+
T Consensus 131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 3333334567888999999999999999999999999999999888888877777 999999999999999999888888
Q ss_pred CCCCCChHHHH
Q 008060 544 ETKGLPIEEIE 554 (579)
Q Consensus 544 ~~~~~~~~~~~ 554 (579)
|.+++..++.+
T Consensus 211 eP~rga~~~~~ 221 (493)
T KOG1330|consen 211 EPERGARDEVD 221 (493)
T ss_pred Ccccccccccc
Confidence 88765544443
No 212
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.93 E-value=3.1e-08 Score=101.94 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhh
Q 008060 69 LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS 148 (579)
Q Consensus 69 ~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~ 148 (579)
...|.+.++..+.-++...+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+........|++
T Consensus 259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~ 338 (412)
T PF01306_consen 259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYIT 338 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060 149 EASPAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES 212 (579)
Q Consensus 149 e~~p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes 212 (579)
+.+|++..++...+ .+.+.++|.++.+.++|.+.|..| .+..|++.+.+.++..++ .+.++++
T Consensus 339 ~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 339 AHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999887777777 478889999999999999999987 999999888877666665 5666554
No 213
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.93 E-value=7.1e-09 Score=106.93 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=127.6
Q ss_pred hHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008060 263 NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK 342 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 342 (579)
...+++.++......+.. +....+...+.+++--++++.+.. ...-+.....-..+.++.-++.+++.+|+|+-
T Consensus 363 ~~~~~~~s~~~llff~~a-----v~mG~g~~lv~tFLfWHled~~~~-~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv 436 (618)
T KOG3762|consen 363 DVGKVFASPHILLFFFVA-----VVMGAGVGLVFTFLFWHLEDLGGI-KTLFGVVSALCHAGEILFYFFSFKLIEKIGHV 436 (618)
T ss_pred HHHHHhcCCCEEehhHHH-----HHHHHHHHHHHHHHHHHHhhcCCc-ceeeeehhhhhccchHHHHHHHHHHHHHhccc
Confidence 334666766654322222 223334556666665667777653 34445667777778899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060 343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF 422 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (579)
+++.+++.+.++-++.+....+
T Consensus 437 ~v~~lgLa~~~~Rf~~~S~L~n---------------------------------------------------------- 458 (618)
T KOG3762|consen 437 NVMYLGLACNVGRFLYYSYLQN---------------------------------------------------------- 458 (618)
T ss_pred ceeeehhhHHHHHHHHHHHhcC----------------------------------------------------------
Confidence 9999998888877776665432
Q ss_pred CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHH-HH
Q 008060 423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA-NW 501 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~-~~ 501 (579)
.|..+.+=.+-.+.....+ ....++++...|++.+.++.|+.... ..
T Consensus 459 -------------------------------~W~vLPieilqgit~aliW-aa~~sY~s~vaPp~l~at~Q~l~~g~f~G 506 (618)
T KOG3762|consen 459 -------------------------------PWMVLPIEILQGITHALIW-AAIISYASHVAPPGLRATAQGLLQGIFHG 506 (618)
T ss_pred -------------------------------chheeeHHHHHHHHHHHHH-HHHHHHHHhhCCCcchHHHHHHHHHHhcc
Confidence 3444444334344433332 33347889999999999999998554 56
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhh
Q 008060 502 ISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539 (579)
Q Consensus 502 ~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 539 (579)
+|..+|+++.|.+.+.+|.+..|.++++.+++.+++..
T Consensus 507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999998888776643
No 214
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.91 E-value=3.3e-08 Score=102.06 Aligned_cols=75 Identities=17% Similarity=0.086 Sum_probs=63.2
Q ss_pred ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHHHHhhhhccC
Q 008060 473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--------TSWTFLIFGVISVAALLFVLIFVPE 544 (579)
Q Consensus 473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (579)
.+...+++.|.+|+++|+.+.|+......+|.++++.+.+.+.+..| |+..|++.+++.++..++.++..||
T Consensus 101 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 101 DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45556789999999999999999999999999999999999988888 9999999998888776665555677
Q ss_pred CCC
Q 008060 545 TKG 547 (579)
Q Consensus 545 ~~~ 547 (579)
.++
T Consensus 181 ~~~ 183 (356)
T TIGR00901 181 PQE 183 (356)
T ss_pred CCc
Confidence 543
No 215
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.90 E-value=2.3e-08 Score=101.39 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHHHHH-HHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSILV-ADF 107 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~vl~~-~~~ 107 (579)
++.++...+...+....--..++++..++|+...-. +.+--...+...+.+++.|..+| ||||||.++. +.+
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~---S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS---SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc---cccccccccccceecccccccccccccccccccchHHHhhH
Confidence 333333334444444444456677888889877766 77777777778888999999999 5899887765 555
Q ss_pred HHHHHHHHHHhcchh-----------------hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchh-hhhhhHHHHHH
Q 008060 108 LFFVGAVIMAAAPNP-----------------GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGA-LVSTNGFLITS 169 (579)
Q Consensus 108 l~~i~~ll~~~a~~~-----------------~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~-~~~~~~~~~~i 169 (579)
..+++.++.+++.++ ..+++..-+.=++.......+.+++.|...++++.+ +.+++....++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 666777777765432 334444555556677788889999999998777766 99999999999
Q ss_pred HHHHHHHHHHHh
Q 008060 170 GQFLSYLINLAF 181 (579)
Q Consensus 170 G~~ig~~l~~~l 181 (579)
|..+|..++++.
T Consensus 191 GnvLGY~~g~y~ 202 (498)
T KOG0637|consen 191 GNVLGYALGSYL 202 (498)
T ss_pred cceeeeeccccc
Confidence 999999988744
No 216
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.90 E-value=7.8e-09 Score=102.35 Aligned_cols=147 Identities=24% Similarity=0.122 Sum_probs=106.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060 310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (579)
....++++...+.+..++.+...|.++||+|||.+++++.+..++...+.....+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~------------------------- 120 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN------------------------- 120 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 4567889999999999999999999999999999999999999887777666432
Q ss_pred ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060 390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS 469 (579)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (579)
...++..=+.++ ..
T Consensus 121 -----------------------------------------------------------------F~afv~aR~l~G-i~ 134 (451)
T KOG2615|consen 121 -----------------------------------------------------------------FAAFVLARFLGG-IF 134 (451)
T ss_pred -----------------------------------------------------------------HHHHHHHHHhhh-hc
Confidence 111222122333 33
Q ss_pred cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhH-HHHHHHHHH--HHHhhhhcc
Q 008060 470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ---AIGTSWTFL-IFGVISVAA--LLFVLIFVP 543 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~---~~g~~~~~~-~~~~~~~~~--~~~~~~~~~ 543 (579)
-+...+..++++|++++++|+.+++.++++..+|.++||.+.|++.+ ..|-++.++ .+.++.+.. .....+++|
T Consensus 135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp 214 (451)
T KOG2615|consen 135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP 214 (451)
T ss_pred cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445667999999999999999999999999999999999999987 445333222 222222222 233345688
Q ss_pred CCCC
Q 008060 544 ETKG 547 (579)
Q Consensus 544 ~~~~ 547 (579)
||-.
T Consensus 215 ETL~ 218 (451)
T KOG2615|consen 215 ETLP 218 (451)
T ss_pred cccc
Confidence 8843
No 217
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.88 E-value=3.3e-08 Score=118.07 Aligned_cols=146 Identities=9% Similarity=0.078 Sum_probs=118.3
Q ss_pred hhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc------------
Q 008060 53 ALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA------------ 119 (579)
Q Consensus 53 ~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a------------ 119 (579)
.+|. +.+.+|.+.... |++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (1140)
T PRK06814 247 QLPLLAKETLGGDENVA---TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK 323 (1140)
T ss_pred HhHHHHHHHcCCchHHH---HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence 4454 455678877777 999999999999999999999999888777666666666655544443
Q ss_pred --------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 120 --------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 120 --------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
.+.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.+...+....
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~ 403 (1140)
T PRK06814 324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI 403 (1140)
T ss_pred chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 677888888999999999999999999999999999999999999999999999999999887543346777
Q ss_pred HHHhhHHHHH
Q 008060 192 LGVAGIPALL 201 (579)
Q Consensus 192 f~i~~i~~l~ 201 (579)
+++.+++.++
T Consensus 404 ~~~~~~~~~~ 413 (1140)
T PRK06814 404 ILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHH
Confidence 6665554333
No 218
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.83 E-value=1.7e-07 Score=98.30 Aligned_cols=143 Identities=10% Similarity=0.065 Sum_probs=111.2
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Q 008060 56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135 (579)
Q Consensus 56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig 135 (579)
.+.+.+|.+..+. |++.+.+.++..+++++.+++.||+++|+++..+. +.++..++.++.++++..++..++.|++
T Consensus 231 ~~~~~lg~s~~~~---G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 231 WAPVALGITLNQP---AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3556688887777 99999999999999999999999999999888775 4455555566677888778888899999
Q ss_pred chhhhhhHhHhhhhcCCccc-chhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060 136 VGMASMTSPLYISEASPAKI-RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204 (579)
Q Consensus 136 ~g~~~~~~~~~l~e~~p~~~-R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i 204 (579)
.+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+... + -|..+.+.+...++.+.
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL-G-VPVVAVIVGFGLLVALA 374 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHH
Confidence 99888888888888766654 79999999999999999999999876443 3 45544444433333333
No 219
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.83 E-value=1.2e-06 Score=96.47 Aligned_cols=153 Identities=17% Similarity=0.275 Sum_probs=120.6
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHHHHHHHhcch--------h
Q 008060 52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPN--------P 122 (579)
Q Consensus 52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~~ll~~~a~~--------~ 122 (579)
.+..++.+.+|.++... ..+...+....-+..+++|.++|++ ||++.+.++.++..+|.++.+++.. .
T Consensus 9 iLvlYl~~~lg~~~~~A---~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTS---TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 34445666788877777 6677777777778899999999965 9999999999999999988876421 2
Q ss_pred hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc---cchhhhhhhHHHHHHHHHHHHHHHHHhccCc------CcchhHHH
Q 008060 123 GALITGRVFVGLGVGMASMTSPLYISEASPAK---IRGALVSTNGFLITSGQFLSYLINLAFTRAP------GTWRWMLG 193 (579)
Q Consensus 123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~---~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------~~Wr~~f~ 193 (579)
...+++-.+..+|.|++-|...+...|.++++ +|...+.++..+.++|+.+++++.+++.+.. .+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 34667778888999999999999999999754 3677888899999999999999998887432 14999999
Q ss_pred HhhHHHHHHHHHHH
Q 008060 194 VAGIPALLQFILML 207 (579)
Q Consensus 194 i~~i~~l~~~i~~~ 207 (579)
+.++..++.+++..
T Consensus 166 i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 166 VPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776666543
No 220
>PRK09848 glucuronide transporter; Provisional
Probab=98.82 E-value=2e-07 Score=99.62 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=101.6
Q ss_pred hhhhh-hhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHH
Q 008060 53 ALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGR 129 (579)
Q Consensus 53 ~lp~i-~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~R 129 (579)
..|.+ .+.+|.+.... ++......++..++.+++++++||+|+|+++.++.++.+++.++..+.+ +++.+++..
T Consensus 250 ~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 326 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFT---VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL 326 (448)
T ss_pred hheeeEeeecCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 34443 34456543332 4444445677888999999999999999999999988888877776654 677777788
Q ss_pred HHHHhhchhhhhhHhHhhhhcCCcc-------cchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060 130 VFVGLGVGMASMTSPLYISEASPAK-------IRGALVSTNGFLITSGQFLSYLINLAFTRAP 185 (579)
Q Consensus 130 ~l~Gig~g~~~~~~~~~l~e~~p~~-------~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~ 185 (579)
++.|+|.+...+...++.+|..+.+ ++|...++++....+|..+|+.+.+.+.+..
T Consensus 327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999998888754 3588999999999999999999998876543
No 221
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.82 E-value=2.8e-08 Score=106.94 Aligned_cols=153 Identities=21% Similarity=0.192 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 008060 296 MYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (579)
...++.+.++.|.. ....++.....+...++.++.|+++|.+|||..++.+.++..++.++.....+..
T Consensus 64 a~~l~~I~~diG~~--~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~--------- 132 (599)
T PF06609_consen 64 ASILPYINADIGGS--DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN--------- 132 (599)
T ss_pred HHHHHHHHHhcCCC--ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH---------
Confidence 33456666677664 3345677778888999999999999999999999999999999888776543211
Q ss_pred ccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcch
Q 008060 376 VETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGW 455 (579)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (579)
T Consensus 133 -------------------------------------------------------------------------------- 132 (599)
T PF06609_consen 133 -------------------------------------------------------------------------------- 132 (599)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 008060 456 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAAL 535 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 535 (579)
..+.+..+++.+ .|........++|+.|.+.|+...++.....-....++|.+...+..+.+|+|.|++.+++..+++
T Consensus 133 ~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 133 TFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 113334444333 333334456689999999998888777655444455666666666666789999999999888777
Q ss_pred HHhhhh
Q 008060 536 LFVLIF 541 (579)
Q Consensus 536 ~~~~~~ 541 (579)
+...++
T Consensus 211 vl~~~f 216 (599)
T PF06609_consen 211 VLIFFF 216 (599)
T ss_pred HHHHHH
Confidence 665443
No 222
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.81 E-value=1.4e-07 Score=93.75 Aligned_cols=159 Identities=29% Similarity=0.391 Sum_probs=126.6
Q ss_pred HHhhhhhhhhhhhhhhhhhhcccccc--hhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060 41 LLFGYDTGVISGALLYIRDDFKSVDR--KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA 118 (579)
Q Consensus 41 ~~~~~~~~~~~~~lp~i~~~~~~s~~--~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~ 118 (579)
+....+........+.+..+++.+.. .. ++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY---GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL 88 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHcCCCchhHHH---HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence 33336666667777777777766552 45 89999999999999999999999999998888888766666677777
Q ss_pred cch--hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc-ccchhhhhhhHH-HHHHHHHHHHHHHHHhccC-cCcchhHHH
Q 008060 119 APN--PGALITGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGF-LITSGQFLSYLINLAFTRA-PGTWRWMLG 193 (579)
Q Consensus 119 a~~--~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~-~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~-~~~Wr~~f~ 193 (579)
..+ .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 766 99999999999999999999999999999998 678999998888 5888888888887776654 124999666
Q ss_pred HhhHHHHHH
Q 008060 194 VAGIPALLQ 202 (579)
Q Consensus 194 i~~i~~l~~ 202 (579)
.........
T Consensus 169 ~~~~~~~~~ 177 (338)
T COG0477 169 LAALLGLLL 177 (338)
T ss_pred HHHHHHHHH
Confidence 666554433
No 223
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.81 E-value=4e-08 Score=108.88 Aligned_cols=226 Identities=15% Similarity=0.027 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060 279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV 358 (579)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 358 (579)
+...+..+.+..........++.+-++.+. +..+.+++.....++.+++.++.+++.||.+||+++.++.++++++.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l-ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL-STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCC-CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 333333444443333444445555555555 5566788888899999999999999999999999999999999999888
Q ss_pred HHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccc
Q 008060 359 LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCH 438 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (579)
+............ +. .+.+ . ....+.+-..|........ +.+..+..|.
T Consensus 115 ~alphf~~~~y~~----------~~---~~~~------~------~~~~~~~~~~c~~~~~~~~------~~~~~~~~~~ 163 (633)
T TIGR00805 115 LSLPHFLSGRYSY----------ST---TVSS------T------GNLSSANSFLCMENLTQAL------RPTQCPSECQ 163 (633)
T ss_pred HhChHHhcCCccc----------cc---cccc------c------ccccccccccccCCCCCCc------cccccccccc
Confidence 7665321110000 00 0000 0 0000000111210000000 0011112333
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060 439 DESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI 518 (579)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~ 518 (579)
+++.. ...+..+++.-++.+.......+...+++.|.+|++.|+...|+.+....+|.++++.+.+.+.+..
T Consensus 164 ~~~~~--------~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 164 KQHKE--------SLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred cccCC--------CceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 32211 1123334344444444444456677899999999999999999999999999999999999887542
Q ss_pred ----------------------ccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 519 ----------------------GTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 519 ----------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
+|+..|++.+++.++..+.. +++|++
T Consensus 236 ~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~ 283 (633)
T TIGR00805 236 VDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKA 283 (633)
T ss_pred cccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence 15566888887777766554 445544
No 224
>PRK09669 putative symporter YagG; Provisional
Probab=98.77 E-value=4e-07 Score=97.14 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh--cchhhHHHHHHHHHHhhchhhhhhHhHhhhh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA--APNPGALITGRVFVGLGVGMASMTSPLYISE 149 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~--a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e 149 (579)
+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777888889999999999999999998887766654433222 3577778888899999999999999999998
Q ss_pred cCCc-------ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 150 ASPA-------KIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 150 ~~p~-------~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
..+. ++.|..++.......+|..+|+.+++.+.+..|
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8752 223667788888999999999999998877554
No 225
>PRK10133 L-fucose transporter; Provisional
Probab=98.77 E-value=2.9e-07 Score=97.94 Aligned_cols=139 Identities=10% Similarity=-0.050 Sum_probs=109.8
Q ss_pred hhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhch
Q 008060 58 RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVG 137 (579)
Q Consensus 58 ~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g 137 (579)
++.+|.++.+. ++....+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.+ .+..-.+.|++.+
T Consensus 287 ~~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~ 362 (438)
T PRK10133 287 EEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMS 362 (438)
T ss_pred hhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH
Confidence 45688888888 9999999999999999999999999999999988888777777666666543 3456678999999
Q ss_pred hhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHH
Q 008060 138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQ 202 (579)
Q Consensus 138 ~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~ 202 (579)
..+|...+...+.++++ .+.+.++..+ ..+|..++|.+.+.+.+..++-|..|++..+..+..
T Consensus 363 ~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 363 IQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 99999999999998764 5677777764 446788888888888886543577776555443333
No 226
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.75 E-value=2.2e-05 Score=81.98 Aligned_cols=314 Identities=11% Similarity=-0.007 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
...++.++++...+.-+.....+.+..+..-+ +....+...-.-.+...+.++..|.+.||..|.+++..+++..-++
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~--sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG--SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS 81 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence 34456666776666666777777665554211 2211133344445556677888999999999999988776655443
Q ss_pred HHHHH------hc--c----hhhHHHHHH---HHHHhhchhhhh-hHhHhhhhcC------CcccchhhhhhhHHHHHHH
Q 008060 113 AVIMA------AA--P----NPGALITGR---VFVGLGVGMASM-TSPLYISEAS------PAKIRGALVSTNGFLITSG 170 (579)
Q Consensus 113 ~ll~~------~a--~----~~~~ll~~R---~l~Gig~g~~~~-~~~~~l~e~~------p~~~R~~~~~~~~~~~~iG 170 (579)
..+.+ +. . +-+...... .+.|.-.-.... ...++=.||. +++.+.+..+...-.--+.
T Consensus 82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c 161 (432)
T PF06963_consen 82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC 161 (432)
T ss_pred HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence 33222 11 1 112222222 222221111111 1112224443 2334456666666666778
Q ss_pred HHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhc----cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHh
Q 008060 171 QFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLL----PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDL 245 (579)
Q Consensus 171 ~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~l----pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (579)
.+++|++.|.+....+ .+....+.+...++..+. ++++ ...|. +..+.+.++.+...... .. .........
T Consensus 162 kllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 237 (432)
T PF06963_consen 162 KLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SS-SESSSDPSI 237 (432)
T ss_pred HHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-cc-ccccchhhH
Confidence 9999999999988766 777777777777777665 4333 22232 22221111100000000 00 000000000
Q ss_pred hhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 008060 246 KESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (579)
. +...+.-+.....++.-++.+.+....-..++.. ..-.+-..+..|+...|. +....+..-....+.+
T Consensus 238 ~----~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~------TVLsf~~lmt~yl~~~G~-s~~~igi~R~~gav~G 306 (432)
T PF06963_consen 238 L----KRLWNPLRTIIRGWRTYFRQPVFLASFALALLYF------TVLSFGGLMTAYLKSQGY-SPSVIGIFRGLGAVFG 306 (432)
T ss_pred H----HHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHH------HHhcCcHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 0 0000000111233444555554433222221111 112223345567777766 5566677777788889
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHh
Q 008060 326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363 (579)
Q Consensus 326 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
+.|+++..++.+|+|..+.-..+......++.+.....
T Consensus 307 l~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~ 344 (432)
T PF06963_consen 307 LLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF 344 (432)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887777776665555544443
No 227
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.75 E-value=9.2e-08 Score=101.55 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=116.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060 40 GLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA 118 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~ 118 (579)
.++............+++.++ ++.+ +.. +.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~---~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLI---SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCc-hhh---HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence 334444444555555555544 4443 334 77888999999999999999999999999999999999999999888
Q ss_pred cc--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc-------ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 119 AP--NPGALITGRVFVGLGVGMASMTSPLYISEASPA-------KIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 119 a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~-------~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|..++++....-+|..+++.+.+.+.+..|
T Consensus 310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 76 999999999999999999999999999998873 334888899999999999999998888765443
No 228
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.4e-08 Score=101.26 Aligned_cols=150 Identities=20% Similarity=0.083 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060 310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (579)
.+.+.+++....++..++.+++.|.+.||+|+|-.+++|+..+..+-+++.+...
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s------------------------- 158 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS------------------------- 158 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch-------------------------
Confidence 4566788888899999999999999999999999999999999999888877532
Q ss_pred ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060 390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS 469 (579)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (579)
+.+++..=..-+..+
T Consensus 159 -----------------------------------------------------------------y~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 159 -----------------------------------------------------------------YPMLFVARSLQGVGS 173 (464)
T ss_pred -----------------------------------------------------------------hHHHHHHHHHhhhhH
Confidence 122333333333333
Q ss_pred cCcccccceeecccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060 470 PGMGTAPWIVNSEIYPLRF-RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~-~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
....+...+++++.+|.+. |+.++|+.-.+..+|-.++|.+.|.++|..|++.+|++.++++++...+-++.++.++.+
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 3334455688899998765 699999999999999999999999999999999999999999999988877777766655
Q ss_pred C
Q 008060 549 P 549 (579)
Q Consensus 549 ~ 549 (579)
+
T Consensus 254 ~ 254 (464)
T KOG3764|consen 254 P 254 (464)
T ss_pred c
Confidence 4
No 229
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.74 E-value=2.3e-07 Score=99.88 Aligned_cols=115 Identities=10% Similarity=0.123 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhhchhhhhhHhHh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITGRVFVGLGVGMASMTSPLY 146 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~ 146 (579)
+++.++..++..++.+++++++||+|+|+.++++..+..++.+...+ ..+.+.+++.-++.|++.+...+...++
T Consensus 269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am 348 (473)
T PRK10429 269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM 348 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777888999999999999999999998888776666555432 3456777777788999999999999999
Q ss_pred hhhcCC-------cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 147 ISEASP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 147 l~e~~p-------~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
++|..+ .++.|..++......-+|..+++.+.+++.+..|
T Consensus 349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999865 2333668888999999999999999998876443
No 230
>PTZ00207 hypothetical protein; Provisional
Probab=98.73 E-value=3.4e-07 Score=99.18 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060 292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP 371 (579)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
.+.+..+.|.+.++.+.+ ..+.+.+...... .....+.+|++.||+|+|+++.++.++..++.++........-.
T Consensus 43 ~y~fsv~s~~L~~~lgls-~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~--- 117 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLT-QRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIE--- 117 (591)
T ss_pred HHHHHHHHHHHHHHhCcC-HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 345556677776666664 4445555444333 23456678999999999999999999999999887765321000
Q ss_pred ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060 372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS 451 (579)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (579)
T Consensus 118 -------------------------------------------------------------------------------- 117 (591)
T PTZ00207 118 -------------------------------------------------------------------------------- 117 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060 452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS 531 (579)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (579)
...|...+..++.+.+ .....+.....+.+.+| +.||.+.|+..+...+|+++.+.+...+.. .++...|++.+++.
T Consensus 118 ~s~~~l~l~r~l~G~G-~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~ 194 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLG-CMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFA 194 (591)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 0012222222222222 11122333455677786 678999999999999999875555554444 35667788888888
Q ss_pred HHHHHHhhhhccCC
Q 008060 532 VAALLFVLIFVPET 545 (579)
Q Consensus 532 ~~~~~~~~~~~~~~ 545 (579)
++..++.+++++..
T Consensus 195 ~vv~ll~~~~vr~p 208 (591)
T PTZ00207 195 LVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHhheeCC
Confidence 87777666655443
No 231
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.5e-07 Score=89.51 Aligned_cols=171 Identities=12% Similarity=0.104 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH-
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF- 110 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~- 110 (579)
++.++|+.+.+..+....+++. .+++.||+++.+. +.+.+....-.++.+++.|.++||+|++-..+.+..+..
T Consensus 268 ~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a---~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 268 VLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA---GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc---cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence 3444555554444444333332 5788999999988 888888888899999999999999999988776554443
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060 111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW 190 (579)
Q Consensus 111 i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~ 190 (579)
.+-.+..| +++.=.+...++|+............++...|.++.|.+.|..+...++|-++.|++++.+.+..+++-+
T Consensus 343 ~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~ 420 (459)
T KOG4686|consen 343 LGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN 420 (459)
T ss_pred HHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence 33333332 3333445667788887766666677788899999999999999999999999999999999997764333
Q ss_pred ---HHHHhhHHHHHHHHHHHhc
Q 008060 191 ---MLGVAGIPALLQFILMLLL 209 (579)
Q Consensus 191 ---~f~i~~i~~l~~~i~~~~l 209 (579)
.|++.+.+++....+.+.+
T Consensus 421 le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 421 LEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 3444445555554444443
No 232
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=103.54 Aligned_cols=143 Identities=22% Similarity=0.217 Sum_probs=117.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060 310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (579)
+.....+...+..++..+|++++|+++||+|||++++.+.++..++.+...+..+
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~------------------------- 170 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN------------------------- 170 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc-------------------------
Confidence 5566777888889999999999999999999999999999999888866665432
Q ss_pred ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060 390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS 469 (579)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (579)
+....+.=++.+++.
T Consensus 171 -----------------------------------------------------------------~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 171 -----------------------------------------------------------------YWMFLIFRFLSGFFG 185 (521)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHhhc
Confidence 333555556666666
Q ss_pred cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
.+.....+.+..|+++++.|+.+..+ ....+.++.+++...+++.. +|++.+++..+..++..++ +++.||.+
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 66677778999999999999999999 88889999999999998887 8999999988888877766 55566764
No 233
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.72 E-value=9e-08 Score=94.32 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=100.0
Q ss_pred HHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhh
Q 008060 80 AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 159 (579)
Q Consensus 80 lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~ 159 (579)
+.-.-|.++.+++.||+|||+.+..++++++++.++...+.+-....+.-|..-++..+.+.+.+.|..|.+|..-|+.+
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 34456788999999999999999999999999999887765543333333444444445566778899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCC
Q 008060 160 VSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES 212 (579)
Q Consensus 160 ~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpes 212 (579)
.|.-....-+|.++.|+++ ...+. +-..+..+.+.++++..+..+++|-.
T Consensus 472 vGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred hhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeec
Confidence 9999999999999999999 33333 24456666777777788887777743
No 234
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.7e-06 Score=85.70 Aligned_cols=144 Identities=18% Similarity=0.098 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc-----cccchHHHH
Q 008060 29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND-----RFGRRTSIL 103 (579)
Q Consensus 29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD-----r~Grr~vl~ 103 (579)
....+..+.+.+.+++...+..+ .+|.+.+.=|.|..+. +. .+..+..+. --+.|.++.| |+||||.-+
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~---a~-fS~ay~P~s-LKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ---AI-FSFAYWPFS-LKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh---hh-hhhhhhHHH-HHHHHHhhhHHHHHHhhcccccee
Confidence 33445555566788888888888 8898888667766665 32 222222222 2568889999 999998644
Q ss_pred H-HHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHH
Q 008060 104 V-ADFLFFVGAVIMAAA-----------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ 171 (579)
Q Consensus 104 ~-~~~l~~i~~ll~~~a-----------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~ 171 (579)
. +..+.+..+++.+.- ++...+....++.-+..+.--.+.-...-....+++-|-+......+...|.
T Consensus 103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gy 182 (510)
T KOG3574|consen 103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGY 182 (510)
T ss_pred eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhH
Confidence 3 555555555555432 2333333344555555555555556666667777777777776666666666
Q ss_pred HHHHHHH
Q 008060 172 FLSYLIN 178 (579)
Q Consensus 172 ~ig~~l~ 178 (579)
+++..+-
T Consensus 183 fL~~~if 189 (510)
T KOG3574|consen 183 FLGNVVF 189 (510)
T ss_pred Hhhccee
Confidence 5554443
No 235
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.67 E-value=5.2e-07 Score=95.68 Aligned_cols=179 Identities=14% Similarity=0.031 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCchhhHHH-HHHHHHHHHHHHHHhcc
Q 008060 291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID----RTGRKKLLVIS-LSGVILSLGVLSAVFHE 365 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 365 (579)
++.....+.+.|++..+. +....+.+.....+.+++..++.|+++| |+|||+.++.+ ....++++.++....+.
T Consensus 19 ~~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 356666777788887776 6677788888888899999999999999 59999998764 55555555555443221
Q ss_pred cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060 366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
...... +. ++
T Consensus 98 ~~~~~~-----------~~-------------------------------------------------------~~---- 107 (477)
T TIGR01301 98 GHLFGD-----------NL-------------------------------------------------------DK---- 107 (477)
T ss_pred hhhccc-----------cc-------------------------------------------------------cc----
Confidence 000000 00 00
Q ss_pred ccCCCCCcc---hHHHHHHHHHHHhhccCcccccceeeccccccccc--hhhhHHHHHHHHHHHHHHHHHHHHH--HHhc
Q 008060 446 TRGCPSKFG---WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFR--GVCGGIAATANWISNLIVAQSFLSL--TQAI 518 (579)
Q Consensus 446 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~gi~~~~~~~g~~i~~~~~g~~--~~~~ 518 (579)
.... +..++.+.+........ .+...++++|..|++.| +.+.++.+....+|+.+++.+.+.. .+..
T Consensus 108 -----~~~~~~i~~~~i~~~lld~~~n~~-~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 108 -----KTKPRAIIVFVVGFWILDVANNML-QGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 0001 11222222222222222 23445889999998765 6799999999999999999887764 2221
Q ss_pred -------------ccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 519 -------------GTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 519 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
+++..|.+.+++.+++.++..+..+|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 4677899988888898888888888864
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.2e-06 Score=86.81 Aligned_cols=175 Identities=21% Similarity=0.223 Sum_probs=139.2
Q ss_pred ccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHH
Q 008060 23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTS 101 (579)
Q Consensus 23 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~v 101 (579)
-|+++.-|.+.+...+-.+..+... .-+|.+..|-|.+..+. |++.+...+..+..++....+++|. .+|+.
T Consensus 204 vw~~~~aW~vtLfmGlqS~~~Y~~~----~WLP~ili~~G~sa~~a---G~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLLYYIVI----GWLPAILIDRGLSAAEA---GSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred cccCchhHHHHHHHHhhHHHHHHHH----HHHHHHHHHcCCCHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 4566667777776666655554433 45588889999999999 9999999999999999999999965 57777
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc-chhhhhhhHHHHHHHHHHHHHHHHH
Q 008060 102 ILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI-RGALVSTNGFLITSGQFLSYLINLA 180 (579)
Q Consensus 102 l~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~-R~~~~~~~~~~~~iG~~ig~~l~~~ 180 (579)
.+....++.++.+.+.+.+.-..++- -++.|+|.|..++.+...+.+..+..+ -++-.++.+....+=..+||.+.|+
T Consensus 277 ~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 277 VVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 78888888888888877765433333 489999999999999999999887544 4566677777777777889999999
Q ss_pred hccCcCcchhHHHHhhHHHHHHHHH
Q 008060 181 FTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 181 l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
+.|..++|+..+.......++..+.
T Consensus 356 lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 356 LHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777766665
No 237
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.64 E-value=3.8e-05 Score=81.20 Aligned_cols=130 Identities=8% Similarity=-0.065 Sum_probs=96.2
Q ss_pred hhhhhhhhcccccc--hhhHHHHHHHHHHHHHHHH-HHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc----c-----
Q 008060 53 ALLYIRDDFKSVDR--KTLLQESIVSMAVAGAIIG-AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA----P----- 120 (579)
Q Consensus 53 ~lp~i~~~~~~s~~--~~~~~g~l~s~~~lg~~i~-~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a----~----- 120 (579)
++-++++.+..+.. ....+.++.+...+..++. .++.+++++|++|++++-+....+....+++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 44567777766432 2233488888887776666 8999999999999999888777776666666553 1
Q ss_pred ----------------------hhhHHHHHHHHHHhhchhhhh-hHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHH
Q 008060 121 ----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177 (579)
Q Consensus 121 ----------------------~~~~ll~~R~l~Gig~g~~~~-~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l 177 (579)
+.|...+......+-...... .-..+..|.++.+|-.|..++++.+.++|..+++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455555555554 677899999999999999999999999999999999
Q ss_pred HHHhc
Q 008060 178 NLAFT 182 (579)
Q Consensus 178 ~~~l~ 182 (579)
..++.
T Consensus 185 ~~~~~ 189 (472)
T TIGR00769 185 IKYFS 189 (472)
T ss_pred HHHHH
Confidence 88876
No 238
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.60 E-value=1.5e-06 Score=90.36 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060 296 MYYSPTIVQLSGFASNRT-ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS 374 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.+..|.+.++.+.+ ..+ .+.+......+..+..+.+|+++||+|.|+++..+.+...+..+++.+...
T Consensus 46 s~a~p~L~~elglT-~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---------- 114 (511)
T TIGR00806 46 SFITPYLLTVLNFT-EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---------- 114 (511)
T ss_pred HHHHHHHHHHcCCC-HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 33455555566664 455 888888889999999999999999999999999999888888888777532
Q ss_pred cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060 375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG 454 (579)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (579)
-
T Consensus 115 -------------------------------------------------------------------------------l 115 (511)
T TIGR00806 115 -------------------------------------------------------------------------------V 115 (511)
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred hHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh---HHHHHHH
Q 008060 455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF---LIFGVIS 531 (579)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~---~~~~~~~ 531 (579)
+...+.-++++.+-+.. . ....++...+|+++|+++.|+.+.+..+|.++++.+.+. ....||+.-+ .+.....
T Consensus 116 ~~L~i~R~llGvaEA~~-~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~ 192 (511)
T TIGR00806 116 WHMQLMEVFYSVTMAAR-I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFM 192 (511)
T ss_pred HHHHHHHHHHHHHHHHH-H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Confidence 11233333333333322 3 666888999999999999999999999999999999998 5567765432 2223333
Q ss_pred HHHHHHhhhhccCCC
Q 008060 532 VAALLFVLIFVPETK 546 (579)
Q Consensus 532 ~~~~~~~~~~~~~~~ 546 (579)
.+++++. +++|..+
T Consensus 193 ~~a~~~a-~~LP~~~ 206 (511)
T TIGR00806 193 TFSVFLA-LFLKRPK 206 (511)
T ss_pred HHHHHHH-HhCCCCc
Confidence 3344443 4566433
No 239
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.58 E-value=7.7e-07 Score=94.31 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060 310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (579)
+..+-+++.+....+.+++.+.+|++.||+|-|+++..+.++.+++.++........
T Consensus 71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~----------------------- 127 (466)
T KOG2532|consen 71 SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG----------------------- 127 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 455667777888899999999999999999999999999999998888888765421
Q ss_pred ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060 390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS 469 (579)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (579)
.| .++.+=++.+...
T Consensus 128 ----------------------------------------------------------------~~-~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 128 ----------------------------------------------------------------FY-LLLVLRFLQGLGQ 142 (466)
T ss_pred ----------------------------------------------------------------ch-hhHHHHHHhHHHH
Confidence 22 2333333333333
Q ss_pred cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA-IGTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
....|....+.++-.|+++|++..++.....++|.+++-.+.|.+.+. .||+..|.+.+++.++-.++.+++..
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 334677778999999999999999999999999999999999999998 99999999999999888776555543
No 240
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.57 E-value=6.9e-07 Score=92.42 Aligned_cols=163 Identities=17% Similarity=-0.011 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhcc
Q 008060 291 GINTVMYYSPTIVQLSGF----ASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHE 365 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+++.+...+..|+..... .+...+.-+...+....-+..+++|+++|| +|+|+.+..|.+++.++.+++......
T Consensus 36 syYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~ 115 (498)
T COG3104 36 SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS 115 (498)
T ss_pred hhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc
Confidence 455555556666654333 455555555555555567788999999999 699999999999999999988764200
Q ss_pred cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060 366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
T Consensus 116 -------------------------------------------------------------------------------- 115 (498)
T COG3104 116 -------------------------------------------------------------------------------- 115 (498)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 008060 446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR--FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWT 523 (579)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~ 523 (579)
+...+.....+++.....+=+....+..|++|++ +|-.+.++..+..++|++++|.+.+++.++.||...
T Consensus 116 --------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~g 187 (498)
T COG3104 116 --------GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVG 187 (498)
T ss_pred --------cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHH
Confidence 0111333333333333344556668899999763 367788888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 008060 524 FLIFGVISVAALLFVLIF 541 (579)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~ 541 (579)
|...++-+.++++..++.
T Consensus 188 F~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 188 FGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999998886654
No 241
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.55 E-value=1.7e-05 Score=81.53 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
+.+.-+-.+...+..+.+.+..+|+.-+.=.....++..++.++.+++++.+.-+++-.+.+++.|........+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 445555666777778888889998874444456666788899999999999999999999999999988888886 4455
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHHHHHHHH-HhccC
Q 008060 152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFILM-LLLPE 211 (579)
Q Consensus 152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l~~~i~~-~~lpe 211 (579)
++ ...+-+.++.+.+.++|+..-..+.. .+ +-|..+++...+.++..+.+ +.+|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54 34677777778788888877766665 33 34777777766655555553 44443
No 242
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.50 E-value=1.8e-06 Score=93.93 Aligned_cols=140 Identities=21% Similarity=0.159 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccc
Q 008060 315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT 394 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (579)
+++.....+++.++.++.|+++|++|||+.++++.+...++.++.....+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------------------------------ 141 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------------------------------ 141 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------------------------------
Confidence 68888899999999999999999999999999999999999998887642
Q ss_pred cccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc
Q 008060 395 ADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT 474 (579)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (579)
.+...++-++.+.+.+.. ..
T Consensus 142 -----------------------------------------------------------~~~l~~GR~l~G~g~G~~-~~ 161 (513)
T KOG0254|consen 142 -----------------------------------------------------------WYQLIVGRILTGLGVGGA-SV 161 (513)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhccchhhh-hh
Confidence 122233444444333332 23
Q ss_pred ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI--GTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
+...+.+|+.|++.||...++.+....+|..++ .+.+...++. +|+..+.+..+.+++..+. .+++||+.
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 445899999999999999999999888777777 5666666654 7988888888877777777 67788653
No 243
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.49 E-value=3.2e-06 Score=82.92 Aligned_cols=256 Identities=13% Similarity=0.074 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc
Q 008060 76 SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI 155 (579)
Q Consensus 76 s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~ 155 (579)
-+..-.+.+.-++.-.+.|..--|+++++-.+......++.-+.++.+.+=+.-++.|...+ ...+-++++-+..++++
T Consensus 49 PvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~ 127 (433)
T KOG3810|consen 49 PVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEM 127 (433)
T ss_pred cchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHH
Confidence 33344555666777789999988999888777777778888889999999899999999765 56677788888999999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcC
Q 008060 156 RGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYP 234 (579)
Q Consensus 156 R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~ 234 (579)
+.++.+...+..-.|...|..++..++.... +.+..-.+.-....+..+..+++|..+|-+..+.+.++.. .
T Consensus 128 Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v----- 200 (433)
T KOG3810|consen 128 YKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--V----- 200 (433)
T ss_pred HHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--e-----
Confidence 9999999999999999999999988876533 2334444444434444455667776654443332222111 0
Q ss_pred CCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhH
Q 008060 235 AHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRT 313 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 313 (579)
.+.+....+.............-..++.+..++|.+..+.+...+- ..+++-+.+|....-++.. ......
T Consensus 201 ---~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~-----scg~~QV~nY~Q~LW~~~~~~~~~vy 272 (433)
T KOG3810|consen 201 ---GDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALA-----SCGYYQVTNYTQILWKEVAPNPANVY 272 (433)
T ss_pred ---ccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHh-----hchhHHHHHHHHHHHHhhCCCchhhh
Confidence 0000000000000000001111234667778888887766654433 3466777777666655542 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060 314 ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI 347 (579)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 347 (579)
.|..-.+....++++.+..|++.-...|+.-+++
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll 306 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLL 306 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHH
Confidence 3444455566688888889998766666644333
No 244
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.45 E-value=2e-06 Score=91.48 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------hcccchhhHHHHHHH
Q 008060 458 LVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ------AIGTSWTFLIFGVIS 531 (579)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~~~~~ 531 (579)
++++-++.+.+..+..|....++...+.+++||..+|+.+....+|+++++.+...+.+ ..||++.|++-|++.
T Consensus 137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~ 216 (495)
T KOG2533|consen 137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT 216 (495)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence 66666677777777778888999999999999999999999999999999998877643 468999999999999
Q ss_pred HHHHHHhhhhccCCCC
Q 008060 532 VAALLFVLIFVPETKG 547 (579)
Q Consensus 532 ~~~~~~~~~~~~~~~~ 547 (579)
++..+++++++|+...
T Consensus 217 ~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 217 LVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHheEEEEecCChh
Confidence 9999988888886544
No 245
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.44 E-value=1.9e-05 Score=80.32 Aligned_cols=187 Identities=17% Similarity=0.259 Sum_probs=136.9
Q ss_pred CchhhHHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHh
Q 008060 12 DASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGG 90 (579)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G 90 (579)
++++..+...+-+..+.-.+.+..+++..+...+.. .++.+ =.+-||.+..+. ..+......|..++....|
T Consensus 193 ~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD----~iLEPygg~Vfgmsv~eT---T~Lta~~~~G~L~G~~~~g 265 (403)
T PF03209_consen 193 PRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQD----VILEPYGGEVFGMSVGET---TRLTAFWGGGTLLGMLLAG 265 (403)
T ss_pred CCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhH----HHcCCchhHHcCCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334455554444444444444444545444444333 33333 346689998888 8899999999999999999
Q ss_pred hhhc-cccchHHHHHHHHHHHHHHHHH---HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHH
Q 008060 91 WMND-RFGRRTSILVADFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFL 166 (579)
Q Consensus 91 ~lsD-r~Grr~vl~~~~~l~~i~~ll~---~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~ 166 (579)
++.. |.++|+.-.+++.+..++..+. +...+.+.+...-++.|++.|.......+.+.+...+++.|..+|.+...
T Consensus 266 ~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaa 345 (403)
T PF03209_consen 266 FLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAA 345 (403)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence 8887 6777887778887777766654 44568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCcC---------cchhHHHHhhHHHHHHHHH
Q 008060 167 ITSGQFLSYLINLAFTRAPG---------TWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 167 ~~iG~~ig~~l~~~l~~~~~---------~Wr~~f~i~~i~~l~~~i~ 205 (579)
..+...++..+++.+.|... .+-.+|.+.++..++.+++
T Consensus 346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776321 2555666666555444444
No 246
>PRK11462 putative transporter; Provisional
Probab=98.43 E-value=1.4e-05 Score=85.47 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHhhchhhhhhHhHhhhh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASMTSPLYISE 149 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e 149 (579)
+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+++.|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999999999999987765554444333333322 23344455566788777777766777777
Q ss_pred cCC-------cccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060 150 ASP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAP 185 (579)
Q Consensus 150 ~~p-------~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~ 185 (579)
..+ .++.|..++......-+|..+++.+++++.+..
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 665 222255556667788889999998888876543
No 247
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.41 E-value=1.1e-06 Score=68.92 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=75.8
Q ss_pred HhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcch
Q 008060 42 LFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN 121 (579)
Q Consensus 42 ~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~ 121 (579)
..++.+..++|++|.+++|.+++..+. |++.+.+++||.+|.+...++.++..+++.+..+++...+..+.+++.++
T Consensus 3 amGigRFayTplLP~M~~~~~ls~~~a---g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 3 AMGIGRFAYTPLLPLMQADGGLSLSQA---GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred chhhHHHHHHhHhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999999999 99999999999999999999999988899999999999999999999988
Q ss_pred hhHHH
Q 008060 122 PGALI 126 (579)
Q Consensus 122 ~~~ll 126 (579)
++.+.
T Consensus 80 ~~~w~ 84 (85)
T PF06779_consen 80 FWLWS 84 (85)
T ss_pred hHHHh
Confidence 87653
No 248
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.41 E-value=8.8e-07 Score=91.79 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=130.0
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhc
Q 008060 57 IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGV 136 (579)
Q Consensus 57 i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~ 136 (579)
-.++++....-. |........|-.+.-++.+++.+|+|+-+++.+++.+..+=.+..++..|.|+.+...+++|+..
T Consensus 397 Hled~~~~~~Lf---Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ 473 (618)
T KOG3762|consen 397 HLEDLGGIKTLF---GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITH 473 (618)
T ss_pred HHhhcCCcceee---eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHH
Confidence 456666444444 77778888888888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhHhhhhcCCcccchhhhhhhHH-HHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhc
Q 008060 137 GMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL 209 (579)
Q Consensus 137 g~~~~~~~~~l~e~~p~~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~l 209 (579)
+.++.+..+|+++..|++.|+.+.++... ..++|--+|.+++|.+.+.++ =|..|.+.++.+++.+++...+
T Consensus 474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998654 468999999999999999887 8999999988877776664443
No 249
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.39 E-value=2.9e-06 Score=90.95 Aligned_cols=125 Identities=9% Similarity=0.092 Sum_probs=108.3
Q ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh----------cchhhHHHHH
Q 008060 59 DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA----------APNPGALITG 128 (579)
Q Consensus 59 ~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~----------a~~~~~ll~~ 128 (579)
+.+|.++... |.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.++..
T Consensus 281 ~~lG~s~~~~---G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~ 357 (468)
T TIGR00788 281 QCLPGGPSFS---GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD 357 (468)
T ss_pred ccCCCCcchh---hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence 5688888888 99999999999999999999999999999999999999887765431 1344455666
Q ss_pred HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
-++.+++.+..+.+...++++..|+++++...++..+..++|..+++.+++.+.+..+
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7889999999999999999999999999999999999999999999999999887544
No 250
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.37 E-value=6.3e-07 Score=91.20 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhH-----HHHHHHHH-HHHHHHHHHhHhhhhccccchHHHHH
Q 008060 31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL-----QESIVSMA-VAGAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~-----~g~l~s~~-~lg~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
+.++..+..+|+.-......+.....+.+.++..+.+... ......+. ..+++.|-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 6777888888888888888888888898888866554422 11112222 22233355667789999999999999
Q ss_pred HHHHHHHHHHHHHhcch--------hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060 105 ADFLFFVGAVIMAAAPN--------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL 176 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a~~--------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~ 176 (579)
|.+++++..+..+...| .....+..++.-+|-+ .....+.+|.||.+-|+..-|+..+..-.|+++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988766 2223333444444433 334556799999999999999999999999999999
Q ss_pred HHHHhcc-----CcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060 177 INLAFTR-----APGTWRWMLGVAGIPALLQFILMLLLPESP 213 (579)
Q Consensus 177 l~~~l~~-----~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp 213 (579)
.-.++.+ ..+ -|+.|++.+.+.++..+..+++||+.
T Consensus 461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence 9999888 555 89999999999998888888899984
No 251
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.37 E-value=8.7e-06 Score=84.98 Aligned_cols=144 Identities=18% Similarity=0.239 Sum_probs=105.9
Q ss_pred HHHhhhhhhhhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060 40 GLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA 118 (579)
Q Consensus 40 ~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~ 118 (579)
.++......+.+.+..+..+ .+|.++... .+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~---~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f 321 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFA---YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF 321 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444333 234433334 66777777788888999999999999999999999999999998888
Q ss_pred cc--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc------cc-chhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 119 AP--NPGALITGRVFVGLGVGMASMTSPLYISEASPA------KI-RGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 119 a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~------~~-R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
.+ +.+.+++..++.+++.+...+...++++|..+- ++ -|...+......=+|.+++..+.++.....|
T Consensus 322 ~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 322 TPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred hcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65 788888999999999999999999998776542 22 2666677777777888888888777765443
No 252
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.32 E-value=6.1e-06 Score=78.02 Aligned_cols=101 Identities=15% Similarity=0.258 Sum_probs=79.3
Q ss_pred hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 008060 47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI 126 (579)
Q Consensus 47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll 126 (579)
.-..+|.+..+-+.++...++. |.+....+-..++...+.|.++|+-|||+..+.-++.+.+++ +.-.+++|-.++
T Consensus 53 DWLQgPYvYyLYstYgFgkG~I---gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLm 128 (454)
T KOG4332|consen 53 DWLQGPYVYYLYSTYGFGKGDI---GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLM 128 (454)
T ss_pred hhhcCceeeeeehhcCccCCcc---ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEe
Confidence 4445677777888888888888 888888888888899999999999999997665555555444 344578899999
Q ss_pred HHHHHHHhhchhhhhhHhHh-hhhcC
Q 008060 127 TGRVFVGLGVGMASMTSPLY-ISEAS 151 (579)
Q Consensus 127 ~~R~l~Gig~g~~~~~~~~~-l~e~~ 151 (579)
++|.+-|+..+..+...-++ +.|..
T Consensus 129 VGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 129 VGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888877654 56665
No 253
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.25 E-value=4.3e-08 Score=104.73 Aligned_cols=145 Identities=21% Similarity=0.161 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccc
Q 008060 313 TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSA 392 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (579)
...+......++.++|++++|+++||+|||+.+..+..+..++.++..+.....
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~-------------------------- 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYN-------------------------- 100 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence 356777888899999999999999999999999999988888887766653210
Q ss_pred cccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCc
Q 008060 393 ATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGM 472 (579)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (579)
++..+...-++.++...+.
T Consensus 101 -------------------------------------------------------------~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 101 -------------------------------------------------------------NFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred -------------------------------------------------------------ccccccccccccccccccc
Confidence 0111222222222222233
Q ss_pred ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh---cccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA---IGTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
.+....++.|..|++.|+...++.+....+|..++..+.-.+.+. .+|+..+.+.++.+++..+. ..++||+
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pES 194 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 456678999999999999999999988888877776554333222 34888887777777665554 3567876
No 254
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.24 E-value=1.8e-05 Score=76.45 Aligned_cols=140 Identities=23% Similarity=0.178 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008060 291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS 370 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (579)
..+.+..|.|.+-+..+. +..+...+.....++..+ .+..|.+.|++|.+.++.+|.....+++.++.......-.
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~-- 92 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP-- 92 (250)
T ss_pred cccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC--
Confidence 456677788877666655 667777777777777766 4888999999999999999999999999888776542211
Q ss_pred CccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCC
Q 008060 371 PMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP 450 (579)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (579)
T Consensus 93 -------------------------------------------------------------------------------- 92 (250)
T PF06813_consen 93 -------------------------------------------------------------------------------- 92 (250)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcchHHHHHHHHHHHhhccCc-ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 451 SKFGWLALVGLALYIIFFSPGM-GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA 517 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~ 517 (579)
+ .+.+ ...+..+..+.+... .+.......+.+| +.||++.|+.-....+++++-..+...+.+.
T Consensus 93 ~-~~~~-~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 93 S-LPVW-LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred c-cchH-HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 0 0111 222222333333222 2333344457787 5799999999999999999988888777665
No 255
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.23 E-value=2.6e-05 Score=69.61 Aligned_cols=109 Identities=12% Similarity=0.163 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC
Q 008060 73 SIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152 (579)
Q Consensus 73 ~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p 152 (579)
.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+.....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 35566777788888999999999999999999999988655443 56778899999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 153 AKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 153 ~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
+++|++..+++......+.++|.++...+.
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888776553
No 256
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.20 E-value=1.9e-05 Score=83.43 Aligned_cols=137 Identities=21% Similarity=0.158 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccc
Q 008060 322 SGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCM 401 (579)
Q Consensus 322 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (579)
++..++.+...|.++||+|||..+........+....+.+..
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-------------------------------------- 113 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-------------------------------------- 113 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--------------------------------------
Confidence 566788889999999999999999888877777776666542
Q ss_pred ccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeec
Q 008060 402 KCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNS 481 (579)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (579)
|+.++ .....+..........++++
T Consensus 114 -----------------------------------------------------~~~~~--~~~l~g~~~~~~s~~~a~va 138 (463)
T KOG2816|consen 114 -----------------------------------------------------YWFFL--LLGLSGGFSAIFSVGFAYVA 138 (463)
T ss_pred -----------------------------------------------------HHHhh--hcccccchhhhhhhhhhhee
Confidence 11122 11111111122345568999
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChH
Q 008060 482 EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIE 551 (579)
Q Consensus 482 ~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (579)
+....+.|....|+.+...+.+..++|...+.+.+..|+...|.+..+..++..+...+++||+..++.+
T Consensus 139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998766543
No 257
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.14 E-value=4.7e-05 Score=76.86 Aligned_cols=159 Identities=12% Similarity=0.051 Sum_probs=122.7
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM 116 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~ 116 (579)
++.++.--........++.+.+| .|.+..+. ....+.+..+..+|.+++.++..|+...|++.+..++..+-++..
T Consensus 243 l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a---a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~ 319 (422)
T COG0738 243 LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA---AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV 319 (422)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555666666555 67777777 889999999999999999999999999999999888888888888
Q ss_pred HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhh
Q 008060 117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG 196 (579)
Q Consensus 117 ~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~ 196 (579)
+++++...+ .+-++.|++.+..+|...+.-.+..| + .....|..-....+|.++-|.+.|++.|..+ -...+....
T Consensus 320 ~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~p 395 (422)
T COG0738 320 ALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVP 395 (422)
T ss_pred HHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 888885544 34577899999999999999999998 3 3555566666778899999999999999887 666666445
Q ss_pred HHHHHHH
Q 008060 197 IPALLQF 203 (579)
Q Consensus 197 i~~l~~~ 203 (579)
.+|.+.+
T Consensus 396 llc~lyV 402 (422)
T COG0738 396 LLCYLYV 402 (422)
T ss_pred HHHHHHH
Confidence 5555444
No 258
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=98.14 E-value=0.00025 Score=73.59 Aligned_cols=45 Identities=13% Similarity=-0.030 Sum_probs=36.7
Q ss_pred ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060 473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA 517 (579)
Q Consensus 473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~ 517 (579)
.....++-+.+..|..-|+.|.+.|+..++|+--...+.-++.|.
T Consensus 423 FVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 423 FVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 344457888899999999999999999999988777777666654
No 259
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=98.05 E-value=0.012 Score=61.42 Aligned_cols=155 Identities=11% Similarity=0.014 Sum_probs=108.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHH-HHHHHHHhHhhhhccccchHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~l-g~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
+++.+..++.+.+..++..+..+ ++-.+++.+..+......+.++-+...+ +..+..++.+++.+++.|.+++-+
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~ 97 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI 97 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 34455555555555555555444 4456778887775555555788888888 788889999999999999999888
Q ss_pred HHHHHHHHHHHHHhc---------c-----------------------hhhHHHHHHHHHHhhchhhhh-hHhHhhhhcC
Q 008060 105 ADFLFFVGAVIMAAA---------P-----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEAS 151 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a---------~-----------------------~~~~ll~~R~l~Gig~g~~~~-~~~~~l~e~~ 151 (579)
-+..+....+++++. + +.|...+.....-+-...... .-.....|.+
T Consensus 98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit 177 (509)
T COG3202 98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT 177 (509)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777652 0 113333333333333333333 4456678999
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060 152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRA 184 (579)
Q Consensus 152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~ 184 (579)
..+|-.|..++++.+.+++..++..+..++...
T Consensus 178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 989889999999999999999999888888753
No 260
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00053 Score=74.54 Aligned_cols=156 Identities=15% Similarity=0.262 Sum_probs=119.0
Q ss_pred hhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHHHHHHHhcc------
Q 008060 48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAP------ 120 (579)
Q Consensus 48 ~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~~ll~~~a~------ 120 (579)
.+....+.++.++++.....+ .-..+.+.-......+.++.++|-| ||-+.+.++.++..+|..+..++.
T Consensus 55 g~~~nlv~ylt~~~~~~~~~a---a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~ 131 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGA---ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL 131 (571)
T ss_pred cchhHHHHHHHHHhccchHHH---HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 345677788889999877665 6667777777778889999999976 898999988888888766544321
Q ss_pred -------------------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC---ccc---chhhhhhhHHHHHHHHHHHH
Q 008060 121 -------------------NPGALITGRVFVGLGVGMASMTSPLYISEASP---AKI---RGALVSTNGFLITSGQFLSY 175 (579)
Q Consensus 121 -------------------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p---~~~---R~~~~~~~~~~~~iG~~ig~ 175 (579)
....+....-+..+|.|+.-|...++-+|-++ +++ +...+.++....+.|..++.
T Consensus 132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~ 211 (571)
T KOG1237|consen 132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ 211 (571)
T ss_pred CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence 12356666778888999999999999999998 322 23677888889999999999
Q ss_pred HHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060 176 LINLAFTRAPGTWRWMLGVAGIPALLQFILML 207 (579)
Q Consensus 176 ~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~ 207 (579)
.+..+.-+..+ |.+.|.+.....++.+++++
T Consensus 212 t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 212 TVLVYIQDNVG-WKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHhhhhccc-ceeeccHHHHHHHHHHHHHH
Confidence 98888877776 99999888876665555543
No 261
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.97 E-value=3.7e-05 Score=80.56 Aligned_cols=163 Identities=15% Similarity=0.050 Sum_probs=111.7
Q ss_pred HHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 008060 301 TIVQL-SGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR-KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET 378 (579)
Q Consensus 301 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (579)
.|++. ....+.+..|+......++.+++++++|+...|.+. |+.++.++++++++.+++......+.
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~----------- 127 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN----------- 127 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 45554 223356677888888999999999999999999886 78888999999999988855543221
Q ss_pred cccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHH
Q 008060 379 SHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLAL 458 (579)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (579)
+..|+++
T Consensus 128 -------------------------------------------------------------------------~~~y~mL 134 (488)
T KOG2325|consen 128 -------------------------------------------------------------------------GVKYLML 134 (488)
T ss_pred -------------------------------------------------------------------------chHHHHH
Confidence 1123333
Q ss_pred HHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH---Hh---------c-ccchhhH
Q 008060 459 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT---QA---------I-GTSWTFL 525 (579)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~---~~---------~-g~~~~~~ 525 (579)
+.- +..+.+.+.....-.++++..-.+.|.++++..+...-+|.++||.+...+. +. + -|..+-+
T Consensus 135 ~~R--~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w 212 (488)
T KOG2325|consen 135 VAR--ILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW 212 (488)
T ss_pred HHH--HHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence 333 3333333444555677888666777888888887777788888876544332 11 1 1456788
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCC
Q 008060 526 IFGVISVAALLFVLIFVPETKGLP 549 (579)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~ 549 (579)
+.+++.++..++..++.+|.....
T Consensus 213 ~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 213 LMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHHHHHHHHHhheeecccCc
Confidence 888999999888888888765544
No 262
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.91 E-value=0.024 Score=60.57 Aligned_cols=154 Identities=11% Similarity=0.041 Sum_probs=98.2
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHH-HHHHHHHhHhhhhccccchHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSILV 104 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~l-g~~i~~l~~G~lsDr~Grr~vl~~ 104 (579)
.+..+..++.+.+..++..+..+.+ -.+++.+=.+......+..+-....+ +..+...+..+++++++|.+++-+
T Consensus 19 ~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~ 94 (491)
T PF03219_consen 19 HRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI 94 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3445555666666666655554433 34444443333333333555554444 455667789999999999998877
Q ss_pred HHHHHHHHHHHHHhc---------c----------------------hhhHHHHHHHHHHhhchhhhh-hHhHhhhhcCC
Q 008060 105 ADFLFFVGAVIMAAA---------P----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEASP 152 (579)
Q Consensus 105 ~~~l~~i~~ll~~~a---------~----------------------~~~~ll~~R~l~Gig~g~~~~-~~~~~l~e~~p 152 (579)
.+..+.....++++. + +.|.+.+.....-+-.....+ .-..+..|.++
T Consensus 95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666666655555541 0 123333333333333333333 45778899999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060 153 AKIRGALVSTNGFLITSGQFLSYLINLAFTR 183 (579)
Q Consensus 153 ~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~ 183 (579)
.+|-.|..+++..+.++|.+++..+..++.+
T Consensus 175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888877
No 263
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.85 E-value=0.00046 Score=76.43 Aligned_cols=163 Identities=17% Similarity=0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060 296 MYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS 374 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (579)
...+..|+.+..+.+...+..+........-+..+++|++.|+ +||++.+.++.++..++..++.........+
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~----- 81 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH----- 81 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc-----
Confidence 3334455544444445555555555555567778889999997 7999999999998888887776532100000
Q ss_pred cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060 375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG 454 (579)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (579)
+. ..
T Consensus 82 ---------------------------------------------------------------------------~~-~~ 85 (654)
T TIGR00926 82 ---------------------------------------------------------------------------PL-HD 85 (654)
T ss_pred ---------------------------------------------------------------------------ch-HH
Confidence 00 01
Q ss_pred hHHHHHHHHHHHhhccCcccccceeeccccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchhh
Q 008060 455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR---FRGVCGGIAATANWISNLIVAQSFLSLTQAI-------GTSWTF 524 (579)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~-------g~~~~~ 524 (579)
...++++++ +.+...++-+...+...|.++++ .+-....+...+.++|+++++.+.+.+.+.. +|..+|
T Consensus 86 ~~~l~gLaL-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 86 LLDLLGLAL-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHH-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 112222222 22223333455557777777643 3667888889999999999999999887543 588888
Q ss_pred HHHHHHHHHHHHHhhh
Q 008060 525 LIFGVISVAALLFVLI 540 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~ 540 (579)
.+.+++++++.++...
T Consensus 165 ~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 165 GVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888776544
No 264
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.75 E-value=0.0051 Score=65.01 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=29.4
Q ss_pred ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060 473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS 510 (579)
Q Consensus 473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~ 510 (579)
.+....+..+.+++++|-.+..++..+-.+|-++|..+
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777888999999988888888887777754
No 265
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.75 E-value=0.00049 Score=71.58 Aligned_cols=108 Identities=19% Similarity=0.364 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc--c-h------hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc---cchhhhhhhHHHH
Q 008060 100 TSILVADFLFFVGAVIMAAA--P-N------PGALITGRVFVGLGVGMASMTSPLYISEASPAK---IRGALVSTNGFLI 167 (579)
Q Consensus 100 ~vl~~~~~l~~i~~ll~~~a--~-~------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~---~R~~~~~~~~~~~ 167 (579)
|.++++.++..+|.++..++ + . .+.++++-++.++|.|+.-|....+++|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888884432 2 2 367889999999999999999999999999865 4677888999999
Q ss_pred HHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHh
Q 008060 168 TSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL 208 (579)
Q Consensus 168 ~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~ 208 (579)
++|..++..+.+++.+..+ |.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999998887 999999999877666665443
No 266
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.72 E-value=0.00013 Score=56.70 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=58.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060 37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~ 109 (579)
...++........+.|.+|...++.|.+..+. |.+.++..+...++++++|.++||+|+++.++....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i---Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQI---GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34455555666777788888888899988888 99999999999999999999999999998877765543
No 267
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.0076 Score=61.73 Aligned_cols=176 Identities=16% Similarity=0.060 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060 32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV 111 (579)
Q Consensus 32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i 111 (579)
...+.++..+........+....++..+.+...+.+............+...+....-..+.-|. |+++ ..++.+.++
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~-~~~l~~~~i 96 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRV-GYLLSLIAI 96 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHH
Confidence 33444444555666677777777888777765554443334444445555555566666666662 2222 222211111
Q ss_pred -H--HHHHHh-------cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH---
Q 008060 112 -G--AVIMAA-------APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN--- 178 (579)
Q Consensus 112 -~--~ll~~~-------a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~--- 178 (579)
. .+..+. ...+...++.-.+.+.+.|.......... ..+|++.-+..++ +.++++++..++.
T Consensus 97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a-~~~P~~ytqavm~----G~a~aG~l~Sl~~i~t 171 (406)
T KOG1479|consen 97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLA-GLFPSEYTQAVMS----GQALAGTLTSLLRILT 171 (406)
T ss_pred HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhh-hcCCHHHHHHHHh----cchhHhHHHHHHHHHH
Confidence 1 111222 12355666667778888777666665544 4456555443333 3333333322222
Q ss_pred -HHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChh
Q 008060 179 -LAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPR 214 (579)
Q Consensus 179 -~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~ 214 (579)
....+...+=-..|.+..++.+++++++..+|+.|-
T Consensus 172 ka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 172 KAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 222222222233455555666666666667777653
No 268
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.63 E-value=0.0062 Score=61.30 Aligned_cols=54 Identities=24% Similarity=0.116 Sum_probs=41.8
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060 304 QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV 358 (579)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 358 (579)
++.+. +..+...+.....+.+.+...+.|.++||+|||+.-+..+++..++++.
T Consensus 62 ~~yg~-~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 62 ESYGF-SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 55565 5555666666677778888889999999999999988888877777753
No 269
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.60 E-value=0.00046 Score=65.87 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=36.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHh---cc-CcCcchhHHHHhhHHHHHHHHHHHhc
Q 008060 154 KIRGALVSTNGFLITSGQFLSYLINLAF---TR-APGTWRWMLGVAGIPALLQFILMLLL 209 (579)
Q Consensus 154 ~~R~~~~~~~~~~~~iG~~ig~~l~~~l---~~-~~~~Wr~~f~i~~i~~l~~~i~~~~l 209 (579)
++|+..+.....+.++|.++.-+.--.- .+ ...+|++++.+.+++.++-++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777788888887654332111 11 11259999999998877777665554
No 270
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.47 E-value=2.3e-05 Score=84.95 Aligned_cols=198 Identities=16% Similarity=0.058 Sum_probs=0.9
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccC
Q 008060 303 VQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFS 382 (579)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (579)
++.....+..+.+++....-++.++..++..++.+|..|-+.+-.|.++++++.+++.............
T Consensus 29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~---------- 98 (539)
T PF03137_consen 29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE---------- 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc----------
Confidence 3444455677889999999999999999999999998888888899999999988877654332211000
Q ss_pred CCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc-hHHHHHH
Q 008060 383 NLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG-WLALVGL 461 (579)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 461 (579)
+..... ...+.++..|.+..+.+- .+..++.+.++++. ... +..+++.
T Consensus 99 ----------~~~~~~------~~~~~~~~~c~~~~~~~~-------~~~~~~~~~~~~~~--------~~~~~~~f~~g 147 (539)
T PF03137_consen 99 ----------EASNSN------GNSSISSNLCDSSSSSQA-------SSDCQDCCSSSSSS--------LSGYFYVFILG 147 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------cccccc------cccccccccccccccccc-------cCcccccccccccc--------chHHHHHHHHH
Confidence 000000 000111122211111110 01111111111111 111 1112222
Q ss_pred HHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh---------------------cc-
Q 008060 462 ALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA---------------------IG- 519 (579)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~---------------------~g- 519 (579)
-++.+..+....++-.+|+-|.++++..+...|+......+|-++|=.+.+...+. .|
T Consensus 148 q~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA 227 (539)
T PF03137_consen 148 QLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA 227 (539)
T ss_dssp ----SSS-------------------------------------------------------------------------
T ss_pred HHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence 22222222233556689999999999999999999888888877776555544311 13
Q ss_pred cchhhHHHHHHHHHHHHHhhhh
Q 008060 520 TSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
|...|++.+++.++..+....+
T Consensus 228 WWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 228 WWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6667888888888777765444
No 271
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.40 E-value=0.0016 Score=50.61 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060 284 QVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG 351 (579)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 351 (579)
.++..+.+...+.-|.|.++++.|. +..+.+.+..+..+..+++.++.|.++||.++++........
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3455566778888899999998777 667788888888899999999999999999998887655443
No 272
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.20 E-value=0.0052 Score=67.55 Aligned_cols=207 Identities=15% Similarity=-0.004 Sum_probs=118.7
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccC
Q 008060 303 VQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFS 382 (579)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (579)
++.....+....+++....-++..+......++.-|..|-+++-.|.++++++.++..+..............
T Consensus 123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~------- 195 (735)
T KOG3626|consen 123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV------- 195 (735)
T ss_pred hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhh-------
Confidence 3444444566688888888888888889999999999999999999999999988887653322111000000
Q ss_pred CCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHH
Q 008060 383 NLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLA 462 (579)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (579)
. ++ -.+.+..+.++.+|- ..+ -+...+.-+.+|+++++.+ .|..++...
T Consensus 196 -~------------~~--~~~~~~~~~s~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~---------~~llff~~q 244 (735)
T KOG3626|consen 196 -I------------KQ--SVENPSSSLSFCCCN-----KST--NLCRPSPENSKREKESTSY---------PFLLFFLGQ 244 (735)
T ss_pred -h------------hc--cccCCccccchhhcc-----CCc--cccCCCCCcccccccCCch---------hHHHHHHHH
Confidence 0 00 000000000111111 000 0111111222222222221 233333333
Q ss_pred HHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh------------------cc-cchh
Q 008060 463 LYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA------------------IG-TSWT 523 (579)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~------------------~g-~~~~ 523 (579)
++.+....-..++-.+++-|...++......|+..+...+|=++|=.+.+...+. .| |+..
T Consensus 245 ~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG 324 (735)
T KOG3626|consen 245 LLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG 324 (735)
T ss_pred HHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence 3333333334556678999999888889999999888888877776666655422 12 5668
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCC
Q 008060 524 FLIFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
|++.+.++++..+..++ .|+...+
T Consensus 325 FLi~g~~~~~~a~p~f~-fPk~lp~ 348 (735)
T KOG3626|consen 325 FLICGALLLFSAVPLFF-FPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHHHHh-CcccCcc
Confidence 88888888888887644 5554443
No 273
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.95 E-value=0.011 Score=60.87 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=48.3
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060 302 IVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV 362 (579)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+.++..+ +...+.+.+.++.+..++-.+.+-|+.||+|-|..+.++..+..++..+=...
T Consensus 70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is 129 (480)
T KOG2563|consen 70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS 129 (480)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444 55667788888999999999999999999999999999999888887765544
No 274
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.78 E-value=0.014 Score=61.83 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=54.3
Q ss_pred eeecccc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060 478 IVNSEIY---PLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK 546 (579)
Q Consensus 478 ~~~~~~~---p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (579)
+...|.. |.+ +|...+.......+|++++..+.|.+.+..+++..|.+.+.+..+..+..+++.+|.+
T Consensus 109 a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~ 179 (433)
T PF03092_consen 109 ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK 179 (433)
T ss_pred HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc
Confidence 4555544 444 7788888888999999999999999999999999999998888888777666667633
No 275
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.71 E-value=0.022 Score=58.91 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH--HHHHHH---HHHhcchhhHHHHHHHHHHhhchhhhhhHhHh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL--FFVGAV---IMAAAPNPGALITGRVFVGLGVGMASMTSPLY 146 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l--~~i~~l---l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~ 146 (579)
.+...+|.+|-.++.--...+ |+ |++.+.+++- ..+..+ ..-+.++.|..++.-+..|+..|..++.....
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666677777665554322111 33 4443333322 222222 23346889999999999999999999999999
Q ss_pred hhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 147 ISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 147 l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
+.|-.++++|..++|....+-++|..++.+++-++-
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887654
No 276
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.62 E-value=0.039 Score=49.31 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060 288 QFVGINTVMYYSPTIVQLSGFA-----SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV 358 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 358 (579)
.+.++.+........++..+.. +......-..+......+.+++.+.+.+++|.|+.++++.+...+-.+.
T Consensus 8 ~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~ 83 (156)
T PF05978_consen 8 LFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS 83 (156)
T ss_pred HHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433221 2233344445556667888889999999999999998888776654443
No 277
>PRK03612 spermidine synthase; Provisional
Probab=96.59 E-value=0.091 Score=56.96 Aligned_cols=134 Identities=14% Similarity=0.033 Sum_probs=80.6
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH--HH-HHHHHH----Hhcchh-hHHHHHHHH
Q 008060 60 DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL--FF-VGAVIM----AAAPNP-GALITGRVF 131 (579)
Q Consensus 60 ~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l--~~-i~~ll~----~~a~~~-~~ll~~R~l 131 (579)
-+|.+..+. +.+.+++.+|.++|+.+++++.++.-|+.. ..-+.+ .+ ++..+. ++...+ ..++..-++
T Consensus 44 ~~G~s~~~~---~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 44 LLGDSVTQF---STVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HhCchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544444 999999999999999999988744333322 221111 11 111111 111111 222344466
Q ss_pred HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc-CcCcchhHHHHhhHH
Q 008060 132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIP 198 (579)
Q Consensus 132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~-~~~~Wr~~f~i~~i~ 198 (579)
.++..|+..|....+..+... ++-++..|-......+|+++|.++.+++.- ..|..+..+++.++.
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~ 186 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN 186 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 788888888887776655432 224677888888999999999999887654 555455555544433
No 278
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.14 Score=53.98 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=92.6
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHhHhhhh---ccccchHHHHHHHHHHHHHH
Q 008060 38 IGGLLFGYDTGVISGALLYIRDDF-KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN---DRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 38 l~~~~~~~~~~~~~~~lp~i~~~~-~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~ls---Dr~Grr~vl~~~~~l~~i~~ 113 (579)
...+..+...+....+.|.-..-. ..........+...-...+|..++..+.+.++ +++||++.+.++..+..++.
T Consensus 247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~ 326 (461)
T KOG3098|consen 247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF 326 (461)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence 334455555555555555432221 22222222223333333344444445555555 56799999999888888877
Q ss_pred HHHHhc------------------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH
Q 008060 114 VIMAAA------------------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY 175 (579)
Q Consensus 114 ll~~~a------------------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~ 175 (579)
++.-.. +++...++.-+++|++-+......+.++.+.. +++|..+.++...-..++..++.
T Consensus 327 ~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 327 LLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence 776542 24566777789999999999999999999999 56689999998888888877766
Q ss_pred HHHHHh
Q 008060 176 LINLAF 181 (579)
Q Consensus 176 ~l~~~l 181 (579)
......
T Consensus 406 f~~~~~ 411 (461)
T KOG3098|consen 406 FFSPYL 411 (461)
T ss_pred hhhhhh
Confidence 655443
No 279
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=96.49 E-value=0.81 Score=45.52 Aligned_cols=100 Identities=13% Similarity=0.174 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc--cc
Q 008060 78 AVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA--KI 155 (579)
Q Consensus 78 ~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~--~~ 155 (579)
..+..+..+++.+.+..++|-|+.+.++...+... +..-+=+.+..++-.-...|++.+..+..--+|+++.-.. ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 34445566666678999999999999988877653 2333446788899999999999998887777776555432 23
Q ss_pred c---------hhhhhhhHHHHHHHHHHHHHHH
Q 008060 156 R---------GALVSTNGFLITSGQFLSYLIN 178 (579)
Q Consensus 156 R---------~~~~~~~~~~~~iG~~ig~~l~ 178 (579)
| .+..+.+...+.-+...|-.++
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~is 177 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLIS 177 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHH
Confidence 3 3445555555554544443333
No 280
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.23 E-value=0.082 Score=56.21 Aligned_cols=41 Identities=5% Similarity=0.037 Sum_probs=37.7
Q ss_pred ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008060 475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT 515 (579)
Q Consensus 475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~ 515 (579)
+.|.+.+|+...++..+..++....+++|..+++.+...+.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999998888776
No 281
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.96 E-value=0.19 Score=49.24 Aligned_cols=61 Identities=26% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060 295 VMYYSPTIVQLSGFASN-RTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS 355 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 355 (579)
.....+.+..+...... ...++......+...++.++.|.+.||.|||+.+..+.....++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 82 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG 82 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 33445555555544332 34566677777777888899999999999997777666553333
No 282
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.84 E-value=0.11 Score=53.94 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=92.2
Q ss_pred HHHHHHHHH--hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060 297 YYSPTIVQL--SGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS 374 (579)
Q Consensus 297 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.|+..|+.+ .+.+..+...-+.-+..-..++..+....+.|.++.|++++++.+...+...++.+...
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---------- 93 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---------- 93 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc----------
Confidence 344556554 34444333333333333345666777888999999999999998888888777766532
Q ss_pred cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060 375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG 454 (579)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (579)
T Consensus 94 -------------------------------------------------------------------------------- 93 (412)
T PF01770_consen 94 -------------------------------------------------------------------------------- 93 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhccCcc--cccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHH
Q 008060 455 WLALVGLALYIIFFSPGMG--TAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--TSWTFLIFGVI 530 (579)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~ 530 (579)
+..+.+.-++++.... ...++++=...|++.--++.+....+.-+|.+++..++-.+....+ +.....+....
T Consensus 94 ---v~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~ 170 (412)
T PF01770_consen 94 ---VLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS 170 (412)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2222222333332221 2334555555677777788888888888888888877766665333 44444444444
Q ss_pred HHHHHHHhhhhccCCC
Q 008060 531 SVAALLFVLIFVPETK 546 (579)
Q Consensus 531 ~~~~~~~~~~~~~~~~ 546 (579)
..+++++. +++|..+
T Consensus 171 ~~~a~~~~-~fLP~~~ 185 (412)
T PF01770_consen 171 VSLALLIA-LFLPMPK 185 (412)
T ss_pred HHHHHHHH-HHcCCCC
Confidence 44555544 4456543
No 283
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.51 E-value=0.46 Score=50.04 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
+...++..+.++..-.++.....+...-|.++... |..-+...+....+.+...++.+|+|..|.=+.++.....+.
T Consensus 261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i---gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L 337 (432)
T PF06963_consen 261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI---GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL 337 (432)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 33344444444433334455555555558877777 999999999999999999999999999988777776655444
Q ss_pred HHHHh---c---c----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 114 VIMAA---A---P----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 114 ll~~~---a---~----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
.++.. . + +...++.+-.+.=+|.=+.-.+..-++.|..|+++||...|...+..++-..+-..++-.+.
T Consensus 338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44332 1 1 22333333333333443455666778999999999999999999998888888777765443
No 284
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=95.05 E-value=0.99 Score=49.46 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCc
Q 008060 312 RTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYS 390 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (579)
..+.-.............+++++++|- +||-+++.++.++..++..++......+.....
T Consensus 73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~------------------- 133 (571)
T KOG1237|consen 73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF------------------- 133 (571)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-------------------
Confidence 333344444455567777899999997 588888888888888887776665443321100
Q ss_pred cccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhcc
Q 008060 391 SAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSP 470 (579)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (579)
-| .|+.....|. .|++.....+...+........
T Consensus 134 -------------------~~-----------------~~~~~~~~c~----------~~s~~q~~~~~~~l~lia~G~g 167 (571)
T KOG1237|consen 134 -------------------MC-----------------KFKPGGNVCE----------SPSKLQLAVLYGALYLIALGAG 167 (571)
T ss_pred -------------------cc-----------------cCCCCCCccc----------CcchHHHHHHHHHHHHheeccC
Confidence 01 0000000111 1122222223322223332333
Q ss_pred Ccccccceeecccccc----cc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060 471 GMGTAPWIVNSEIYPL----RF--RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540 (579)
Q Consensus 471 ~~~~~~~~~~~~~~p~----~~--~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (579)
+.-+-..+.-+|-++. +. +...+....+..++|..++-.+..++.++.||...|.+..+..+++.++.+.
T Consensus 168 g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 168 GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 4444455677777762 22 2356667777888888888888888888899999999999888888776543
No 285
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.35 E-value=0.094 Score=54.45 Aligned_cols=75 Identities=16% Similarity=-0.025 Sum_probs=58.3
Q ss_pred hhccCcccccceeeccccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060 467 FFSPGMGTAPWIVNSEIYPLR---FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~p~~---~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
....+.=|....+..|.++++ .|...........++|..+++.+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 333344455567888888765 456677788999999999999999999999999999999999999888875543
No 286
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=94.24 E-value=0.51 Score=37.21 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060 293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH 364 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+.+...+|...++.+. +..+++++.....++.++|.+...++.++..+++.+..+.+...+..+.+....+
T Consensus 9 FayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444456777666555 7888999999999999999999999999888888888888888888877776543
No 287
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=93.87 E-value=0.013 Score=59.14 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=2.4
Q ss_pred ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060 473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS 510 (579)
Q Consensus 473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~ 510 (579)
.+....+..+..++++|..+..++..+-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888888888777777766644
No 288
>PRK03612 spermidine synthase; Provisional
Probab=93.68 E-value=1.2 Score=48.34 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHh
Q 008060 489 RGVCGGIAATANWISNLIVAQSFLSLTQ-AIGTSWTFLIFGVISVAALLFV 538 (579)
Q Consensus 489 ~g~~~gi~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~ 538 (579)
.|...|-...++.+|+++|+++++++.- ..|...+.++.+.+.++.+++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999888764 6787666666666655555443
No 289
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=92.60 E-value=1.1 Score=45.40 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
.+.+.+++++.-...-+..........+++-.. ..+...-.-+-.....+..++.|...|+..|+|++...+.+.-++
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gns--l~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlS 106 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNS--LLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLS 106 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCce--ehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHH
Confidence 344556666665555555555555555544211 111122222233344566778889999999999988877655443
Q ss_pred HHHHH------hc------chhhHHHHHHHHHHhhch--hhhhhHhHh--hhhcC----Ccccchhhh---hhhHHHHHH
Q 008060 113 AVIMA------AA------PNPGALITGRVFVGLGVG--MASMTSPLY--ISEAS----PAKIRGALV---STNGFLITS 169 (579)
Q Consensus 113 ~ll~~------~a------~~~~~ll~~R~l~Gig~g--~~~~~~~~~--l~e~~----p~~~R~~~~---~~~~~~~~i 169 (579)
.++++ +. .++..+..+-.+.-.-.+ -....+..+ -.||. ..+.+.... +.....-..
T Consensus 107 v~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~ 186 (503)
T KOG2601|consen 107 VIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQS 186 (503)
T ss_pred HHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhh
Confidence 33332 22 244444443333222111 111122222 13332 233344444 333334445
Q ss_pred HHHHHHHHHHHhccCcCcchhHHHHhhHHHHH
Q 008060 170 GQFLSYLINLAFTRAPGTWRWMLGVAGIPALL 201 (579)
Q Consensus 170 G~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~ 201 (579)
-..+.|.+.|.+....+ -|..-.+.++..++
T Consensus 187 tn~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 187 TNLLAPVITGLIITFVS-LRASAGTFAAWALV 217 (503)
T ss_pred hhchhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence 56788999998887665 66654444444444
No 290
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=92.55 E-value=2.8 Score=44.49 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhccccch--HHHHHHH--HHHHHHHHHHHh---------cchhhHHHHHHHHHHhh
Q 008060 69 LLQESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVAD--FLFFVGAVIMAA---------APNPGALITGRVFVGLG 135 (579)
Q Consensus 69 ~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr--~vl~~~~--~l~~i~~ll~~~---------a~~~~~ll~~R~l~Gig 135 (579)
+..-....++.+|-.+|..+..+.. .-++| ++++.+. +++.-..++|.. -++-+..++.-++.|+.
T Consensus 307 ~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 307 FYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 3446677888888888887654431 11222 3333222 233333334432 24566777789999999
Q ss_pred chhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 136 ~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
.|-....++.+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888999998888876544
No 291
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=89.11 E-value=3.2 Score=44.59 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=38.0
Q ss_pred ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ 516 (579)
Q Consensus 475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~ 516 (579)
+.|.+++|+...++..+..++....+++|.++++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999888887776
No 292
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=88.84 E-value=8.3 Score=40.84 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=36.6
Q ss_pred ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060 475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ 516 (579)
Q Consensus 475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~ 516 (579)
+.|...+|+...++..+.+++.+..++++..++..+..++.+
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 557889999999999999999999999999998888877765
No 293
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=87.40 E-value=6.9 Score=40.53 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=83.2
Q ss_pred hhhhhhhhcccccc-hhhHHHHHHHH-HHHHHHHHHHhHhhhhccccchHHHHHHHH-HHHHHHHH-H------Hhcchh
Q 008060 53 ALLYIRDDFKSVDR-KTLLQESIVSM-AVAGAIIGAAIGGWMNDRFGRRTSILVADF-LFFVGAVI-M------AAAPNP 122 (579)
Q Consensus 53 ~lp~i~~~~~~s~~-~~~~~g~l~s~-~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~-l~~i~~ll-~------~~a~~~ 122 (579)
+.|.+..+-..+.. +.++.-.+..+ +.+.-.+|.+.+.++-+.= ||+..+..+. ...+-.+. | .+-.+-
T Consensus 265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~ 343 (406)
T KOG1479|consen 265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESD 343 (406)
T ss_pred ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCc
Confidence 44555444332222 34555667777 8888889877777776654 4444333322 22222222 1 224567
Q ss_pred hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 008060 123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180 (579)
Q Consensus 123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~ 180 (579)
+.+++.-.+.|+..|-.....+.+..+-.+++++..+-.+.......|.+.|..++..
T Consensus 344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7888899999999998889999999999999887777777777777777777776643
No 294
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=87.07 E-value=1.2 Score=43.93 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
|.+.-.-.+...+..+......||+.--.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+ .+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RY 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cC
Confidence 55555666677777788888888874322234556677788889999999999999999999988877766655433 33
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHHHHHHH-HHhccC
Q 008060 152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFIL-MLLLPE 211 (579)
Q Consensus 152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l~~~i~-~~~lpe 211 (579)
++. ..+.+..+.+....+|..--..+.+..+ +-|...++...+-++..+. ++.+++
T Consensus 144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 332 2233333334444444444444444221 3566666666554444444 444443
No 295
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=86.36 E-value=0.54 Score=48.92 Aligned_cols=133 Identities=14% Similarity=-0.065 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+...+.+.....|-..|+-.+....+....++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 45667788888899999999999999777766666667777778888888888888888888655544444333332221
Q ss_pred ---------------------Cc--ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060 152 ---------------------PA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204 (579)
Q Consensus 152 ---------------------p~--~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i 204 (579)
.+ .-+|...|+.+....+-+++.....|.+.+..|+-+.+-...+.++++...
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~ 490 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG 490 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence 11 123566677788888888877777777777766666666655555444433
No 296
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=85.69 E-value=11 Score=36.70 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccch--HHHHHHHHHHHHHHHHHHh----cc---hhhHHHHHHHHHHhhchhhhhh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVADFLFFVGAVIMAA----AP---NPGALITGRVFVGLGVGMASMT 142 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr--~vl~~~~~l~~i~~ll~~~----a~---~~~~ll~~R~l~Gig~g~~~~~ 142 (579)
|.+.+.+++..++|+-+..++..|-..| ..+.+..++.++...+... ++ +...-+++..+.-.+.|..+|.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS 364 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS 364 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence 8999999999999999998887765544 3444544444443333222 22 2233355556666778889999
Q ss_pred HhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 143 ~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
.+.+=+++.|.+.|+..+.++..-.++-..++-..- ...+...+-|..|-++.....+..+.
T Consensus 365 imkmRsqyIPEearstimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999887665544333221110 00111113567777777655554443
No 297
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=82.74 E-value=42 Score=31.43 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=19.1
Q ss_pred hcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 149 EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 149 e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
+++..++|.+.-.......-++..+|..+++.+.+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~ 190 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG 190 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44333433233333444555556666666666665544
No 298
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=82.49 E-value=24 Score=34.24 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHH----HHHHHHHHHHHHHHh-c----chhhHHHHHHHHHHhhchhhhh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSIL----VADFLFFVGAVIMAA-A----PNPGALITGRVFVGLGVGMASM 141 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~----~~~~l~~i~~ll~~~-a----~~~~~ll~~R~l~Gig~g~~~~ 141 (579)
....-++..|..+|....|+.... +.||+.+. .+.+++.+..+.... . .++..+++.-|+.|++.=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445556666777777788888764 45665543 234444444444211 2 1466778888888887655555
Q ss_pred hHhHhhhhcCCcccchhhhhhhHHHHHHHHH
Q 008060 142 TSPLYISEASPAKIRGALVSTNGFLITSGQF 172 (579)
Q Consensus 142 ~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ 172 (579)
....+-.|+ +...+.+.--.++..+++|-+
T Consensus 224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HHhcChhhh-cCCCcceehhHHHHHHHHHHH
Confidence 544444443 222222333334445555544
No 299
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=82.23 E-value=29 Score=35.60 Aligned_cols=47 Identities=6% Similarity=-0.021 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060 491 VCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLF 537 (579)
Q Consensus 491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (579)
...+.....-...+.+.|.+.|.+.+..+.+..-.++++..+++.-.
T Consensus 175 ~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~ 221 (503)
T KOG2601|consen 175 NMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWV 221 (503)
T ss_pred hcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHH
Confidence 33456666667788999999999999888888777888877775544
No 300
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=81.22 E-value=4.8 Score=42.67 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hCCCchhH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHH
Q 008060 284 QVFQQFVGINTVMYYSPTIVQL--SGFASNRT--ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL 349 (579)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 349 (579)
.++.|.........-.|.+++. .+.+-.++ -.+...++.+=-+-+.++=...++|+||||..++-.
T Consensus 8 LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 8 LYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred HHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 3444555555444456888876 22221111 122333444322333344455667899999876544
No 301
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=73.63 E-value=13 Score=36.97 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchH-HHH-----HH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT-SIL-----VA 105 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~-vl~-----~~ 105 (579)
.+-+++.++..++-+..+.+.+-. =...+..+.++ +.-|....|.+|..+ .+-+-|+=+-+ ... +-
T Consensus 253 MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~s--qYRwyqvlYQlGVFi-----SRSS~~~~~~p~l~~LailQ~v 325 (409)
T KOG3880|consen 253 MVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDS--QYRWYQVLYQLGVFI-----SRSSINLFTMPYLWLLAILQFV 325 (409)
T ss_pred HHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhh--cchhhheeeeeeEEE-----EeccceEEechHHHHHHHHHHH
Confidence 344555555555544433332211 12333333333 226777777766433 22222332222 111 11
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
-.++.+.-.+..+.++++..++.-+.-|+-.|..++...--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 2233333445567899999999999999988888888887788888889999999999988888888888777544
No 302
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=72.89 E-value=1.2e+02 Score=31.09 Aligned_cols=108 Identities=17% Similarity=0.078 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH----HHH-Hh----cchhhHHHHHHHHHHhhchhhhhh
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA----VIM-AA----APNPGALITGRVFVGLGVGMASMT 142 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~----ll~-~~----a~~~~~ll~~R~l~Gig~g~~~~~ 142 (579)
+.+.+.|.....+|+...-++.|.--.-+.+..-+++..++. .+. .| .++-+.+.+.-++.|.-.|.-.|.
T Consensus 46 S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL 125 (508)
T COG4262 46 SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPL 125 (508)
T ss_pred HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHH
Confidence 889999999999999988888876544433333222222211 111 22 245677888889999999999999
Q ss_pred HhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 143 ~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
.+.++..-.. +-.-..+.....-.+|...+.++-.++
T Consensus 126 ~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 126 LMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHH
Confidence 9988876221 111122222333556666665555444
No 303
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=72.43 E-value=1.4 Score=44.43 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHH--HHHHHHHHHHH----------hcchhhHHHHHHHHHHhhchhh
Q 008060 73 SIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVAD--FLFFVGAVIMA----------AAPNPGALITGRVFVGLGVGMA 139 (579)
Q Consensus 73 ~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~--~l~~i~~ll~~----------~a~~~~~ll~~R~l~Gig~g~~ 139 (579)
....+|.++-.+|..+.++.-=+ ..+|++++.++ +++.-..++|. +.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45677888888888877764211 13455444322 22222222221 2345567778889999999999
Q ss_pred hhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 008060 140 SMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180 (579)
Q Consensus 140 ~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~ 180 (579)
...++.+..+..++++|..+-.+......+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888888777644
No 304
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=71.10 E-value=42 Score=34.22 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccccchH--HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhh
Q 008060 71 QESIVSMAVAGAIIGAAIGGWMNDRFGRRT--SILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS 148 (579)
Q Consensus 71 ~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~--vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~ 148 (579)
-|..-.+..+..+++.+..|.+.-++.|.. .+..+.+..+...++++.+.++|...++..+.+.-.....+++..-++
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA 352 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIA 352 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence 377778888888999999999998887763 344455566666667778889888888887777777777777877788
Q ss_pred hcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060 149 EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183 (579)
Q Consensus 149 e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~ 183 (579)
+....+.-|..+|+.... +.++-.++....+|
T Consensus 353 ~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd 384 (433)
T KOG3810|consen 353 RNLSSELFGLVFGINTFV---ALILQSILTLIVVD 384 (433)
T ss_pred HhhhhhhheeeeehHHHH---HHHHHHhheEEEEc
Confidence 888777778888876543 33333444444444
No 305
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=63.67 E-value=1e+02 Score=33.63 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 008060 320 VTSGLNAAGSIVSIYFIDRTGR 341 (579)
Q Consensus 320 ~~~~~~~~~~~~~g~l~d~~~~ 341 (579)
...+.+.++..+++++-..++.
T Consensus 305 ~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 305 LYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHcCC
Confidence 3444455555555555555554
No 306
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.40 E-value=31 Score=28.26 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHH
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLF 109 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~ 109 (579)
.+-.+.=+++..+.....||+.||| |.++..++..++.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5566667777777788899999998 6666554444433
No 307
>COG3619 Predicted membrane protein [Function unknown]
Probab=58.17 E-value=1.7e+02 Score=27.81 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccc-hH-HH-HHHHHHHHHHHHHHHhc----chhhHHHHHHHHHHh----------
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGR-RT-SI-LVADFLFFVGAVIMAAA----PNPGALITGRVFVGL---------- 134 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Gr-r~-vl-~~~~~l~~i~~ll~~~a----~~~~~ll~~R~l~Gi---------- 134 (579)
........+.+++|......+..|..| .. .+ ..++++..+..+..++. ++....+..-|.+|+
T Consensus 58 a~~~~~pii~Fv~Gv~~~~~~~r~~~~~~~~~l~~~~~ll~~~v~~~~~~~p~~~~~~~~~il~~f~mg~Qnasf~k~~g 137 (226)
T COG3619 58 AVLLLLPILAFVLGVAAAELISRRATRSFIPVLLLVSLLLALIALLALGFIPESSPDFVAVILVAFAMGIQNASFRKVGG 137 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666777777777886666666666654 22 22 22333333333334432 355555544455442
Q ss_pred -hchhhhhhHh-----HhhhhcCCcccc-hhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060 135 -GVGMASMTSP-----LYISEASPAKIR-GALVSTNGFLITSGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 135 -g~g~~~~~~~-----~~l~e~~p~~~R-~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~ 186 (579)
..+..+.+.. .-+.+++..++. -..-.......-++.+.|.++++.+...++
T Consensus 138 ~~~~~t~~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g 196 (226)
T COG3619 138 APYGTTYVTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFG 196 (226)
T ss_pred ccccchhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222211 123555544322 222333444555566666666666654443
No 308
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=54.74 E-value=2.1e+02 Score=27.74 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060 330 IVSIYFIDRTGRKKLLVISLSGVILS 355 (579)
Q Consensus 330 ~~~g~l~d~~~~~~~~~~~~~~~~~~ 355 (579)
+.+-+++.|+..|.+.+.|.+++.+.
T Consensus 258 igGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred hhhHHHhhhheeEEEEEecchhHHHH
Confidence 33456778888888777665554443
No 309
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=54.73 E-value=0.58 Score=44.80 Aligned_cols=353 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc---------cccchHH--HHHH
Q 008060 37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND---------RFGRRTS--ILVA 105 (579)
Q Consensus 37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD---------r~Grr~v--l~~~ 105 (579)
..+.+.+....+..-..+-.+.++.+.++.+. ..+.-+..+.-++..++.|..+| |+|||+. ..-.
T Consensus 23 GvGHmlNDitAScWFTYlllfltqiglsp~~~---AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~wh~~gt 99 (412)
T KOG4830|consen 23 GVGHMLNDITASCWFTYLLLFLTQIGLSPSSR---AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSWHLIGT 99 (412)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHhcCCcchh---HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeeeeeccc
Q ss_pred HHHHHHHHHHHHhcc------------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH
Q 008060 106 DFLFFVGAVIMAAAP------------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL 173 (579)
Q Consensus 106 ~~l~~i~~ll~~~a~------------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i 173 (579)
.+...-+..+.+++. |...+.++-.+.|++-+..--...+.+
T Consensus 100 ~lVslSf~~ifg~a~iF~~~~~~s~vanlglyaialvVFgv~~A~~ke~tea~~-------------------------- 153 (412)
T KOG4830|consen 100 VLVSLSFPMIFGFAKIFLCKSTTSEVANLGLYAIALVVFGVGWASVKESTEALI-------------------------- 153 (412)
T ss_pred EEEEEechhhcCceeEEeeccHHHHHHHhHHHHHHhheeeeeeecccccHHHHH--------------------------
Q ss_pred HHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhH
Q 008060 174 SYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEI 253 (579)
Q Consensus 174 g~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
||.-+....+++...++++...+.|+ ..-.
T Consensus 154 ---------------R~~~~~~v~lG~~~~~vF~~~TrEP~-----------------------------------~~~~ 183 (412)
T KOG4830|consen 154 ---------------RLAGWLVVVLGITVAFVFYAFTREPT-----------------------------------NSFS 183 (412)
T ss_pred ---------------HHhhhheeeeceeEEEEEeecccCcc-----------------------------------cccC
Q ss_pred HhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008060 254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI 333 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (579)
.++.+..+..+...|++-.+....+..++--. ..+....|+|.|..+....+.....++-.+..+..+.-+.+-.
T Consensus 184 ~~~s~~~Rm~W~~WF~~v~~YQiAllYmLsRL-----~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~ 258 (412)
T KOG4830|consen 184 SDASELVRMHWTSWFGHVQFYQIALLYMLSRL-----YINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNS 258 (412)
T ss_pred cchhhhhcccchhhhhhhHHHHHHHHHHHHHH-----HhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcc
Q ss_pred HHHhhcCCchhhH-HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCC
Q 008060 334 YFIDRTGRKKLLV-ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG 412 (579)
Q Consensus 334 ~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (579)
-.--.-.|+|.+. .|.+....+...+........
T Consensus 259 eipwngkrlKayYsaGgiiwifcga~ilLlpr~i~--------------------------------------------- 293 (412)
T KOG4830|consen 259 EIPWNGKRLKAYYSAGGIIWIFCGAVILLLPRGIK--------------------------------------------- 293 (412)
T ss_pred cCCcCcceeeeeeecccHHHHHhhhheeecccchH---------------------------------------------
Q ss_pred cccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhh
Q 008060 413 FCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVC 492 (579)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 492 (579)
.+...+..++-+.-..+....+..+..--.-..+..+..
T Consensus 294 -----------------------------------------symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv 332 (412)
T KOG4830|consen 294 -----------------------------------------SYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFV 332 (412)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEE
Q ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHHHHHh
Q 008060 493 GGIAATANWISNLIVAQSF-------LSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLEL 559 (579)
Q Consensus 493 ~gi~~~~~~~g~~i~~~~~-------g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (579)
.|-..+.-.+++-++-.+. .....+..++-.+...-..+++-.++.++-+-.++-...+....+.|+
T Consensus 333 ~GamSF~DKlS~GiA~~lie~~~~a~~~~k~~~~~r~V~v~V~G~~LV~A~~~~l~lA~~~~~E~~~A~~~~e~ 406 (412)
T KOG4830|consen 333 YGAMSFFDKLSNGIAYQLIELWTPAYDALKSAIFYRRVMVFVPGTCLVLAFLVLLSLAPFKIGERRRARPEDEQ 406 (412)
T ss_pred EehHHHHHhhcccHHHHHHHhcCCcchhhhhhhhheEEEEEecchhHHHHHHHHHhhhhHhhhhhhhcCCcchh
No 310
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.44 E-value=72 Score=26.22 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=37.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHH
Q 008060 485 PLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--TSWTFLIFGVISVAALLF 537 (579)
Q Consensus 485 p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~ 537 (579)
.++.++.+.++-...-.+++++.....|++.|++- -.|.++++-++.+++.++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34567888888888888999999999999999863 234445555555555544
No 311
>PRK09609 hypothetical protein; Provisional
Probab=50.07 E-value=2.8e+02 Score=27.75 Aligned_cols=33 Identities=6% Similarity=0.184 Sum_probs=15.9
Q ss_pred cchhHHHHhhHH-HHHHHHH-HHhccCChhHHHhc
Q 008060 187 TWRWMLGVAGIP-ALLQFIL-MLLLPESPRWLYRK 219 (579)
Q Consensus 187 ~Wr~~f~i~~i~-~l~~~i~-~~~lpesp~~l~~~ 219 (579)
.|...|.+.+.+ +++..+. ++++..-.+|...+
T Consensus 77 ~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~ 111 (312)
T PRK09609 77 VYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKE 111 (312)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466666655533 3444433 44444444454433
No 312
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=45.51 E-value=1.7e+02 Score=30.51 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=51.7
Q ss_pred HHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 128 ~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
...+.+...-..+...++.-++..++...|..|.+.++..++|.---..+..++.|... |+-+
T Consensus 375 ~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt-v~~C 437 (510)
T KOG3574|consen 375 SYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT-VKQC 437 (510)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc-eeec
Confidence 45666666666778888899999999999999999999999998888888888888766 5544
No 313
>PRK10263 DNA translocase FtsK; Provisional
Probab=43.56 E-value=1.4e+02 Score=35.91 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhccCcC
Q 008060 169 SGQFLSYLINLAFTRAPG 186 (579)
Q Consensus 169 iG~~ig~~l~~~l~~~~~ 186 (579)
.|+++|.+++..+...+|
T Consensus 142 gGGIIG~lLs~lL~~LfG 159 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLH 159 (1355)
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 366666666666555444
No 314
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=37.49 E-value=1.5e+02 Score=26.24 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH
Q 008060 120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL 173 (579)
Q Consensus 120 ~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i 173 (579)
+++..+++.-.+.|+| ...+.+.+++--..+++.|..+|+-.+-.+++-+.
T Consensus 95 P~~~~~~~S~~~Fg~g---llGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLG---LLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred CchHHHHHHHHHHHHH---HHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 4555566655555554 33445666777777777799999887777776543
No 315
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=36.20 E-value=4.5e+02 Score=26.20 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc---ccchHHHHH
Q 008060 28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR---FGRRTSILV 104 (579)
Q Consensus 28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr---~Grr~vl~~ 104 (579)
++....+.+.+++++.-+..+..+..+..+.+.++...+.. +++.+... ..+..+-.++ ||.||.=++
T Consensus 22 r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~---al~lal~A------~~~a~r~~~~~~TfGy~R~eiL 92 (296)
T COG1230 22 RRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDAL---ALLLALIA------IKLARRPATKRFTFGYKRLEIL 92 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHH---HHHHHHHH------HHHhcCCCCCCCCccHhHHHHH
Confidence 34444455555555555555555566666777777554444 44333333 2233444444 788887666
Q ss_pred HHHHHHHHHHHHH
Q 008060 105 ADFLFFVGAVIMA 117 (579)
Q Consensus 105 ~~~l~~i~~ll~~ 117 (579)
+.++.++..+..+
T Consensus 93 aa~~nav~Li~~s 105 (296)
T COG1230 93 AAFLNALLLIVVS 105 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
No 316
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=33.95 E-value=4.5e+02 Score=25.55 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=11.3
Q ss_pred chhHHHHhhHHHHHHHHHHHhcc
Q 008060 188 WRWMLGVAGIPALLQFILMLLLP 210 (579)
Q Consensus 188 Wr~~f~i~~i~~l~~~i~~~~lp 210 (579)
..+.-++..++.++..+++.+++
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeec
Confidence 33444444455555555555553
No 317
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.10 E-value=56 Score=34.13 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc----cc-cchHH
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMND----RF-GRRTS 101 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsD----r~-Grr~v 101 (579)
|.+.+...+.+++.+++.|+.+. |. |||++
T Consensus 326 Gal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wi 360 (593)
T KOG1277|consen 326 GALLSAAIVVYALTSPINGYVSGSFYARLGGRRWI 360 (593)
T ss_pred hHHHHHHHHHHHhcccccccccceeeehhccHHHH
Confidence 66677777777888877777665 44 45554
No 318
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=31.00 E-value=78 Score=28.04 Aligned_cols=35 Identities=9% Similarity=-0.052 Sum_probs=23.7
Q ss_pred cccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060 472 MGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI 506 (579)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i 506 (579)
...+.|-+.+-.-.++..|+..|+-.+-.+++...
T Consensus 111 llGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 111 LLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 33344555666667777788888888877776544
No 319
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=28.40 E-value=3.5e+02 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060 315 LLLSLVTSGLNAAGSIVSIYFIDRTGR 341 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~ 341 (579)
-++....++...+....--++.++..+
T Consensus 170 Dll~l~~a~lya~~nV~~E~~v~~~~~ 196 (334)
T PF06027_consen 170 DLLALLGAILYAVSNVLEEKLVKKAPR 196 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 344444444455555555566655443
No 320
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=28.30 E-value=5.6e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=-0.053 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Q 008060 97 GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135 (579)
Q Consensus 97 Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig 135 (579)
.||...........+...+..++-....=.+.+++.+.+
T Consensus 113 Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~ 151 (249)
T CHL00182 113 ERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYG 151 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445443333333333333333443333335666777664
No 321
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=27.49 E-value=65 Score=31.30 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=8.6
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 008060 488 FRGVCGGIAATANWISNLIV 507 (579)
Q Consensus 488 ~~g~~~gi~~~~~~~g~~i~ 507 (579)
.|..++|+........+.+.
T Consensus 76 i~~iGLglg~liW~s~n~l~ 95 (254)
T PF07857_consen 76 IKTIGLGLGMLIWGSVNCLT 95 (254)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 322
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.43 E-value=5.5e+02 Score=31.30 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 008060 322 SGLNAAGSIVSIYFIDRTG 340 (579)
Q Consensus 322 ~~~~~~~~~~~g~l~d~~~ 340 (579)
..++.+|.++...+..-+|
T Consensus 62 Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 62 NLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred cccchHHHHHHHHHHHHHh
Confidence 4456666666666666666
No 323
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=27.12 E-value=3.9e+02 Score=28.39 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060 33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG 112 (579)
Q Consensus 33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~ 112 (579)
.+.+.+-+++..+......|. .+...++++.++. ..+.+.-.+...++.++--....+.|-|-....+.....++
T Consensus 18 ~~~lglQH~lamfg~~V~VPl--ivg~a~~l~~~~~---~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~ 92 (451)
T COG2233 18 LLLLGLQHLLAMFGATVLVPL--LVGLALGLSAEDT---AYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVA 92 (451)
T ss_pred HHHHHHHHHHHHHhcchHhhH--HhccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHH
Confidence 445556666666655544433 2457788888888 88999999999999998877544566565555554444444
Q ss_pred HHHHHh-c--chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhh
Q 008060 113 AVIMAA-A--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST 162 (579)
Q Consensus 113 ~ll~~~-a--~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~ 162 (579)
-+.... . ......+.+-+..|+..-...+.....+...+||---|..+-+
T Consensus 93 p~i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~~ 145 (451)
T COG2233 93 PMIAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVLV 145 (451)
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeee
Confidence 444333 2 2366666666666665554444443377888988766654443
No 324
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=26.78 E-value=7.6e+02 Score=26.43 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=7.7
Q ss_pred HHHHhhcCCchhhH
Q 008060 333 IYFIDRTGRKKLLV 346 (579)
Q Consensus 333 g~l~d~~~~~~~~~ 346 (579)
..+.+|+++|+..+
T Consensus 105 ~~l~k~l~~~~~~~ 118 (465)
T PF03606_consen 105 NLLIKPLKGKKNPL 118 (465)
T ss_pred HHHHHHhcCCcchh
Confidence 34557776554433
No 325
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=26.70 E-value=6e+02 Score=24.70 Aligned_cols=61 Identities=10% Similarity=-0.029 Sum_probs=38.3
Q ss_pred hhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhH
Q 008060 134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI 197 (579)
Q Consensus 134 ig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i 197 (579)
.-.|.-.....+++.+.+|+++|.|+.-+--.+.-+=-.+--..+.++.+. |.+.+.+.+.
T Consensus 28 ~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l---~~~l~~~fg~ 88 (254)
T COG0861 28 IVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTL---TQPLLYIFGL 88 (254)
T ss_pred HHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 335567777888999999999888776543333333333444455555553 7777777443
No 326
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=26.04 E-value=8.2e+02 Score=26.02 Aligned_cols=29 Identities=10% Similarity=-0.107 Sum_probs=21.4
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 008060 152 PAKIRGALVSTNGFLITSGQFLSYLINLA 180 (579)
Q Consensus 152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~ 180 (579)
.+.+.+...++++++.+.|...-|+..+.
T Consensus 18 ~~~d~~W~l~l~GTAIGAGmLfLPI~~g~ 46 (443)
T PRK13629 18 RKSDTTWTLGLFGTAIGAGVLFFPIRAGF 46 (443)
T ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHhc
Confidence 34455777888888888888888877764
No 327
>COG4769 Predicted membrane protein [Function unknown]
Probab=25.86 E-value=91 Score=27.81 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhc
Q 008060 79 VAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGV 136 (579)
Q Consensus 79 ~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~ 136 (579)
.+..++.+...-++..++|+|.+-++|... .-++.+|..++++.+++.|-..
T Consensus 83 sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~------mGaF~hNl~QLivas~Lv~~~~ 134 (181)
T COG4769 83 SFAGAILSTLFMYFLYQFGPKYLSLLGISV------MGAFTHNLGQLIVASFLVFTTS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEeeeehhh------HHHHHHhHHHHHHHHHHHhcch
Confidence 334444555566777899988875555443 3456799999999999887543
No 328
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=25.29 E-value=1.9e+02 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHhhhhccccchH
Q 008060 76 SMAVAGAIIGAAIGGWMNDRFGRRT 100 (579)
Q Consensus 76 s~~~lg~~i~~l~~G~lsDr~Grr~ 100 (579)
.-|.+|+.+...+.|++.+|..+++
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccc
Confidence 4478888999999999999988763
No 329
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.21 E-value=1.4e+02 Score=30.90 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhcC
Q 008060 325 NAAGSIVSIYFIDRTG 340 (579)
Q Consensus 325 ~~~~~~~~g~l~d~~~ 340 (579)
.++..+..|++..|.+
T Consensus 8 ~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4444555666666653
No 330
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.94 E-value=1e+02 Score=33.23 Aligned_cols=39 Identities=21% Similarity=0.052 Sum_probs=22.2
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT 339 (579)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 339 (579)
.++...|+.++..-+-++..+.+.-++..+++|+.+-|+
T Consensus 348 i~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 348 IFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARL 386 (628)
T ss_pred HHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhh
Confidence 444555665555545455555555566666666666663
No 331
>PRK11588 hypothetical protein; Provisional
Probab=24.33 E-value=9.3e+02 Score=26.09 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=22.1
Q ss_pred HhhhhccccchHHH--HHHHHHHHHHHHHHHhcchhhHHHH
Q 008060 89 GGWMNDRFGRRTSI--LVADFLFFVGAVIMAAAPNPGALIT 127 (579)
Q Consensus 89 ~G~lsDr~Grr~vl--~~~~~l~~i~~ll~~~a~~~~~ll~ 127 (579)
.+++.+|++.|..+ .+-+++++++....+++.....++-
T Consensus 136 i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~p 176 (506)
T PRK11588 136 ILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFAI 176 (506)
T ss_pred HHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 36777888766433 3445555666555666555444443
No 332
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.88 E-value=4e+02 Score=21.74 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=10.4
Q ss_pred HHHHHHh-hcCCchhhHHHHHHHHHH
Q 008060 331 VSIYFID-RTGRKKLLVISLSGVILS 355 (579)
Q Consensus 331 ~~g~l~d-~~~~~~~~~~~~~~~~~~ 355 (579)
..|+..| +++-++.+.+.+++..++
T Consensus 61 ~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 61 AVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 3344444 355444444444333333
No 333
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.60 E-value=3e+02 Score=19.80 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCC
Q 008060 165 FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES 212 (579)
Q Consensus 165 ~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpes 212 (579)
.+.-+|.+++.+.+......++ ++....+..+.+++..++...+|++
T Consensus 9 Ws~il~~vvgyI~ssL~~~~~n-~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 9 WSFILGEVVGYIGSSLTGVTYN-FTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456677777777766655444 6766666666666666665555544
No 334
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=21.96 E-value=2.3e+02 Score=25.98 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHhhhhccccc
Q 008060 76 SMAVAGAIIGAAIGGWMNDRFGR 98 (579)
Q Consensus 76 s~~~lg~~i~~l~~G~lsDr~Gr 98 (579)
.-|.+++.+...+.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 45788889999999999999875
No 335
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=21.85 E-value=8e+02 Score=24.45 Aligned_cols=33 Identities=12% Similarity=-0.050 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 008060 495 IAATANWISNLIVAQSFLSLTQAIGTSWTFLIF 527 (579)
Q Consensus 495 i~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (579)
..-..+..-+.++-++.+.+...+||.+.=.+.
T Consensus 159 ~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~ 191 (296)
T COG1230 159 YLHVLGDALGSVGVIIAAIVIRFTGWSWLDPIL 191 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccchHH
Confidence 333344444455556666677777877644443
No 336
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=21.73 E-value=1.9e+02 Score=23.77 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA 119 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a 119 (579)
|=+...|.-.+.+.++.+++..|+.-+-+-=.+|..+..+|..+..+.
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 667788888999999999999999988777677777766666655443
Done!