Query 008060
Match_columns 579
No_of_seqs 392 out of 1319
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.7E-45 1.3E-49 392.9 42.1 443 22-560 3-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.3E-37 4.4E-42 329.9 23.7 402 26-541 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 8.9E-36 3E-40 314.8 36.8 376 26-537 21-428 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 7.5E-31 2.6E-35 281.5 29.4 419 39-548 21-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3.3E-32 1.1E-36 281.6 10.4 358 34-527 3-362 (375)
6 2cfq_A Lactose permease; trans 100.0 6.5E-29 2.2E-33 261.1 12.0 378 43-549 19-407 (417)
7 2xut_A Proton/peptide symporte 99.9 5.9E-27 2E-31 253.3 15.8 164 41-208 22-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.7E-12 6E-17 136.5 16.4 170 36-209 257-433 (451)
9 2cfq_A Lactose permease; trans 99.3 5.3E-12 1.8E-16 131.9 13.3 141 72-213 262-404 (417)
10 3o7q_A L-fucose-proton symport 99.3 4.7E-11 1.6E-15 125.0 19.7 151 49-205 276-428 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.3 1.2E-11 4.3E-16 131.7 13.1 167 287-543 24-198 (491)
12 2gfp_A EMRD, multidrug resista 99.2 2.8E-11 9.5E-16 124.2 11.9 172 286-548 10-181 (375)
13 4gc0_A D-xylose-proton symport 99.2 1.7E-10 5.9E-15 122.8 18.1 174 36-212 282-466 (491)
14 2xut_A Proton/peptide symporte 99.2 2.4E-10 8.1E-15 122.9 15.4 166 289-543 25-200 (524)
15 2g9p_A Antimicrobial peptide l 32.0 14 0.00049 19.9 0.6 14 88-101 2-15 (26)
16 2cr8_A MDM4 protein; ZF-ranbp 25.7 21 0.00072 23.8 0.8 23 392-414 6-31 (53)
17 2zz9_A Aquaporin-4; water tran 21.4 87 0.003 29.9 4.5 15 518-532 205-219 (301)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.7e-45 Score=392.93 Aligned_cols=443 Identities=37% Similarity=0.652 Sum_probs=352.7
Q ss_pred hccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccc-----chhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060 22 LSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVD-----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRF 96 (579)
Q Consensus 22 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~-----~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~ 96 (579)
.++++++.+.+.+..+++.++.++|...++..+|.+.++++.+. ....+.|++.+++.+|..+|++++|+++||+
T Consensus 3 ~~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~ 82 (491)
T 4gc0_A 3 TQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF 82 (491)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred CCcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777888888889999999999999999999998886432 1223458999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHh------------------cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchh
Q 008060 97 GRRTSILVADFLFFVGAVIMAA------------------APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGA 158 (579)
Q Consensus 97 Grr~vl~~~~~l~~i~~ll~~~------------------a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~ 158 (579)
|||++++++.+++.++.+++++ ++|+++++++|+++|++.|+..+....+++|+.|+++|++
T Consensus 83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~ 162 (491)
T 4gc0_A 83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK 162 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence 9999999999999999999984 7899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccCc-------CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHh
Q 008060 159 LVSTNGFLITSGQFLSYLINLAFTRAP-------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRK 231 (579)
Q Consensus 159 ~~~~~~~~~~iG~~ig~~l~~~l~~~~-------~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~ 231 (579)
..++.+.+..+|..+++.++..+.... ..||+.+.+..++.++..+..+++||+|+|+..+++.+++.+.+++
T Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence 999999999999999999887765432 1488888888888888888888999999999999999999888877
Q ss_pred hcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Q 008060 232 VYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN 311 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
.......+++..+..+....+ .+.......++.+ ..........+.++.+.+.+.+|.|.+.+..+.. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 311 (491)
T 4gc0_A 243 IMGNTLATQAVQEIKHSLDHG------RKTGGRLLMFGVG----VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS-T 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHTTHHHHSCCT----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC-H
T ss_pred hcCCchhHHHHHHHHHHHHhh------hhhhhHHHHhccc----HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC-c
Confidence 654332222222111111111 0111112222222 2334455566677788888888998888877764 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcc
Q 008060 312 RTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSS 391 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (579)
...........+..+++.+++++++||+|||+.++.+...+.++.+.+........
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~------------------------ 367 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA------------------------ 367 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc------------------------
Confidence 45566667778889999999999999999999999998888888777765543211
Q ss_pred ccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccC
Q 008060 392 AATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPG 471 (579)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (579)
..+..++.+.++..++..+
T Consensus 368 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 368 -------------------------------------------------------------PGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------------------------chHHHHHHHHHHHHHHHhH
Confidence 2445566677777788888
Q ss_pred cccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------hcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060 472 MGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ------AIGTSWTFLIFGVISVAALLFVLIFVPET 545 (579)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (579)
..++.+.+.+|++|++.|++++|+.++.+++++++++.+++.+.+ ..+...+|++++++++++.++.++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 888889999999999999999999999999999999988876643 34566789999999999999999999999
Q ss_pred CCCChHHHHHHHHhh
Q 008060 546 KGLPIEEIEKMLELR 560 (579)
Q Consensus 546 ~~~~~~~~~~~~~~~ 560 (579)
|++++||+|+.+|++
T Consensus 467 kg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 467 KGKTLEELEALWEPE 481 (491)
T ss_dssp TTCCHHHHGGGTC--
T ss_pred CCCCHHHHHHHhCCC
Confidence 999999999887665
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.3e-37 Score=329.95 Aligned_cols=402 Identities=13% Similarity=0.074 Sum_probs=306.3
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
++.+++.+..+++..+..+++...+++.+|.+.+++ .+..+. |++.+++.++..++++++|+++||+|||++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH---HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 345677888888899999999999999999999999 888888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 106 DFLFFVGAVIMAA----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 106 ~~l~~i~~ll~~~----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccch
Q 008060 182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE 260 (579)
Q Consensus 182 ~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (579)
.+..++||+.|++.+++.++..++ ++++||+|+....+...+. .+..+ .+ .+++.+++...+
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~----~~~~~~~~~~~~ 241 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYP--DD----YNEKAEQELTAK 241 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------CCT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccc--cc----chhhhhcccccc
Confidence 765534999999999887766555 6778888754321111100 00000 00 000000111111
Q ss_pred hhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 008060 261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT- 339 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~- 339 (579)
+...++.+++|.++...+.. +...........+.|.|+++..+.+....+++.....++.+++.++.+++.||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 316 (451)
T 1pw4_A 242 QIFMQYVLPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 316 (451)
T ss_dssp HHHHHHTSSCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22246677777765444333 233445667778899999885555777788888889999999999999999999
Q ss_pred -CCchhhHHHHHHHH-HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCC
Q 008060 340 -GRKKLLVISLSGVI-LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH 417 (579)
Q Consensus 340 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (579)
+||+.+..+..+.. ++.+++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 342 (451)
T 1pw4_A 317 RGNRGATGVFFMTLVTIATIVYWMNP------------------------------------------------------ 342 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSCC------------------------------------------------------
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhc------------------------------------------------------
Confidence 99988777666555 4433322110
Q ss_pred CCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH
Q 008060 418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA 497 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~ 497 (579)
.+..+...+...+.+. ...+..+....+..|.+|++.||+++|+.+
T Consensus 343 ---------------------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (451)
T 1pw4_A 343 ---------------------------------AGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTG 388 (451)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred ---------------------------------ccCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 0012222333333322 222334455688999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060 498 TANWI-SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541 (579)
Q Consensus 498 ~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (579)
...++ |.+++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999888887776543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=8.9e-36 Score=314.75 Aligned_cols=376 Identities=14% Similarity=0.075 Sum_probs=296.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
+++++..+..+++..+..+++....++..|.+.+++|.+..+. |++.+++.++..++++++|+++||+|||++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 3445666677778888889999999999999999999999888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060 106 DFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182 (579)
Q Consensus 106 ~~l~~i~~ll~---~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~ 182 (579)
.++.+++.+++ +++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cCcCc------------------------chhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCC
Q 008060 183 -RAPGT------------------------WRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPA 235 (579)
Q Consensus 183 -~~~~~------------------------Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~ 235 (579)
+..+. ||+.|++.+++.++..+++++. ||+++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------- 238 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------------------- 238 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC-------------------
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-------------------
Confidence 55544 9999988887766665554443 4443200
Q ss_pred CchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCchhHH
Q 008060 236 HEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI-VQLSGFASNRTA 314 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 314 (579)
+++++++..+.+.++++|+|.++...+.... ..........+.|.| +++..+.+...+
T Consensus 239 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 297 (438)
T 3o7q_A 239 ----------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFA 297 (438)
T ss_dssp ----------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred ----------------cccccccchhhhHHHHHhChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCcchhHH
Confidence 0001112234567788888887765544322 233456667788999 888756577788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccc
Q 008060 315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT 394 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (579)
++......++.+++.++.++++||++||+.+..+..+..++.+++.....
T Consensus 298 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 347 (438)
T 3o7q_A 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG------------------------------ 347 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC------------------------------
Confidence 88888889999999999999999999999998888777776665544211
Q ss_pred cccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc
Q 008060 395 ADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT 474 (579)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (579)
...++.+.+...+. ....+
T Consensus 348 ------------------------------------------------------------~~~~~~~~~~g~~~-~~~~~ 366 (438)
T 3o7q_A 348 ------------------------------------------------------------HVGLIALTLCSAFM-SIQYP 366 (438)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHH-TTHHH
T ss_pred ------------------------------------------------------------cHHHHHHHHHHHHH-HHHHH
Confidence 11133333333333 33456
Q ss_pred ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHH
Q 008060 475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLF 537 (579)
Q Consensus 475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~ 537 (579)
..+++..|.+|++ ++.+.++.. .+.+|++++|.+.|.+.+..| ++..|.+.+++.++..++
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6678888999877 888888877 677999999999999999999 998888776665555443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=7.5e-31 Score=281.52 Aligned_cols=419 Identities=15% Similarity=0.087 Sum_probs=263.4
Q ss_pred HHHHhhhhhhhh-hhhhhhhhhh-----cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHHHH
Q 008060 39 GGLLFGYDTGVI-SGALLYIRDD-----FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFV 111 (579)
Q Consensus 39 ~~~~~~~~~~~~-~~~lp~i~~~-----~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~~i 111 (579)
..+...+..... ....+.+.++ +|.+..+. +++.+++.++..++++++|+++|| +|||++++.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~ 97 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA---ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIML 97 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 333333333333 3333445555 99988888 999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc--chhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060 112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR 189 (579)
Q Consensus 112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~--R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr 189 (579)
+.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+..+ ||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~ 176 (491)
T 4aps_A 98 GHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YH 176 (491)
T ss_dssp HHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Confidence 99999999999999999999999999999999999999999988 7778888999999999999999999988776 99
Q ss_pred hHHHHhhHHHHHHHHHHHhc-cCChh----HHHhcCCHHHHHHHHHh----------------hcCCCchhhhHHHhhhh
Q 008060 190 WMLGVAGIPALLQFILMLLL-PESPR----WLYRKGREEEAQAILRK----------------VYPAHEVETEIRDLKES 248 (579)
Q Consensus 190 ~~f~i~~i~~l~~~i~~~~l-pesp~----~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 248 (579)
+.|++.++..++..+.+++. ++..+ ....+.+.++.++..+. .....+.+.........
T Consensus 177 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (491)
T 4aps_A 177 VAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIV 256 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHH
Confidence 99999887766665554332 22110 00011122222222221 00000000000000000
Q ss_pred -hh---hhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 008060 249 -VD---KEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGL 324 (579)
Q Consensus 249 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (579)
.. .......+..+.. +..+++... ... .....+..+..+.....+.|.+.++....+....+.......++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4aps_A 257 AIAIPVFYFAWMISSVKVT--STEHLRVVS-YIP--LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF 331 (491)
T ss_dssp HHHHHHHHHHHHC--------------CTT-HHH--HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH
T ss_pred HHHHHHHHHHHHhhccccc--HHHHHHHHH-HHH--HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHH
Confidence 00 0000000000000 011111111 111 11111222223344455667787765554434455666777778
Q ss_pred HHHHHHHHHHHHhhcCCchhhH-----HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccc
Q 008060 325 NAAGSIVSIYFIDRTGRKKLLV-----ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWD 399 (579)
Q Consensus 325 ~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (579)
.+++.++.+++.||++||+... .+..+..++++++..........
T Consensus 332 ~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 381 (491)
T 4aps_A 332 IMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS------------------------------ 381 (491)
T ss_dssp HHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC------------------------------
T ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------------------
Confidence 8889999999999999987654 56666666655554432211000
Q ss_pred ccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccccccee
Q 008060 400 CMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479 (579)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (579)
+....+...+...+...+. ....+..+.+
T Consensus 382 --------------------------------------------------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~ 410 (491)
T 4aps_A 382 --------------------------------------------------GKVSPLWLVGSWALVILGE-MLISPVGLSV 410 (491)
T ss_dssp --------------------------------------------------TTCCTHHHHHHHHHHHHHH-HTTTTHHHHH
T ss_pred --------------------------------------------------CCccHHHHHHHHHHHHHHH-HHHhHHHHHH
Confidence 0001222233333333332 2335666789
Q ss_pred eccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060 480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 480 ~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
..|.+|++.||+++|+.+...++|.+++|.+.+.+.+ .++...|.+.+++++++.++.+++.++.+++
T Consensus 411 ~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887765 4677788888888888888777666655443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=3.3e-32 Score=281.59 Aligned_cols=358 Identities=15% Similarity=0.082 Sum_probs=274.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060 34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA 113 (579)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ 113 (579)
..+++..+...++...+.+.+|.+.+++|.+..+. +++.+++.++..++++++|+++||+|||++++.+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV---QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH---HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 45667778888889999999999999999988888 999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060 114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG 193 (579)
Q Consensus 114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~ 193 (579)
++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988776 999999
Q ss_pred HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060 194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272 (579)
Q Consensus 194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
+.+++.++..+. .+.+||++++.. ++++.+.+.++.+|+|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~ 200 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDA--------------------------------------PRTRLLTSYKTLFGNSG 200 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTC--------------------------------------CCCCTTTCSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCc--------------------------------------ccccHHHHHHHHhcCcc
Confidence 988887776664 566788753100 00112334566777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH-
Q 008060 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG- 351 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~- 351 (579)
++...+... ...........+.|.++++..+.+....+.......++.+++.++.+++.||.++ + +..+...
T Consensus 201 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~-~~~~~~~~ 273 (375)
T 2gfp_A 201 FNCYLLMLI-----GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-L-MWQSVICC 273 (375)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H-HHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHH
Confidence 765444332 2334556677788888877444466777888888888899999999999999877 2 2222222
Q ss_pred HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060 352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS 431 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (579)
...+..++........
T Consensus 274 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 289 (375)
T 2gfp_A 274 LLAGLLMWIPDWFGVM---------------------------------------------------------------- 289 (375)
T ss_dssp HHTSSSSSHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhccc----------------------------------------------------------------
Confidence 2222221111110000
Q ss_pred ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 008060 432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSF 511 (579)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~ 511 (579)
..+...+...+...+.+. ..+....+..|..| +.||++.|+.+....+|.+++|.+.
T Consensus 290 ---------------------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 290 ---------------------NVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred ---------------------cHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 012223333333333332 35666788899998 8899999999999999999999999
Q ss_pred HHHHHhcccchhhHHH
Q 008060 512 LSLTQAIGTSWTFLIF 527 (579)
Q Consensus 512 g~~~~~~g~~~~~~~~ 527 (579)
|.+.+..++...+.+.
T Consensus 347 g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 347 AMLPQTGQGSLGLLMT 362 (375)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccHHHHHH
Confidence 9998887777666553
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=6.5e-29 Score=261.11 Aligned_cols=378 Identities=11% Similarity=0.053 Sum_probs=244.0
Q ss_pred hhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH---HHHHh
Q 008060 43 FGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA---VIMAA 118 (579)
Q Consensus 43 ~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~---ll~~~ 118 (579)
.........+.+|. +.+++|.+..+. |++.+++.++..++++++|+++||+|||++++++..+++++. ....+
T Consensus 19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 19 YFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHTTTHHHHHHTTTCCCTTTS---HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444566665 566799998888 999999999999999999999999999999998888775532 11222
Q ss_pred cchh-hHHHHHHHHHHhhchhhhhhHhHhhhhcCCc--ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060 119 APNP-GALITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA 195 (579)
Q Consensus 119 a~~~-~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~--~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~ 195 (579)
++.. ..++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+. +||+.|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~ 173 (417)
T 2cfq_A 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLG 173 (417)
T ss_dssp HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHH
Confidence 2221 1234556666666665555444555555443 3457777777777888999999999998764 499999988
Q ss_pred hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR 275 (579)
Q Consensus 196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (579)
+++.++..+.+++.+|+++. +.+.++ . ++ .++++....+.++++++|.++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~-------------~~--~~~~~~~~~~~~~~~~~~~~~~ 224 (417)
T 2cfq_A 174 SGCALILAVLLFFAKTDAPS---SATVAN-----------A-------------VG--ANHSAFSLKLALELFRQPKLWF 224 (417)
T ss_dssp TTTTTTHHHHSCSSCCCCSC---SSCSSS-----------S-------------SS--SCCCCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCccccc---cccccc-----------c-------------cc--cccccccHHHHHHHhcCCchhh
Confidence 77655555544444443210 000000 0 00 0001111234567788887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060 276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV 352 (579)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 352 (579)
..+..... ...+.....+.|.|+.+.... +....++......++.+++.++.++++||+|||+++..+..+.
T Consensus 225 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 225 LSLYVIGV-----SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 44332221 112333344567777654321 1233456666677778899999999999999999988777776
Q ss_pred HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060 353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (579)
+++.+++... +
T Consensus 300 ~~~~~~~~~~-~-------------------------------------------------------------------- 310 (417)
T 2cfq_A 300 SVRIIGSSFA-T-------------------------------------------------------------------- 310 (417)
T ss_dssp HHHHHHHTTC-C--------------------------------------------------------------------
T ss_pred HHHHHHHHHh-c--------------------------------------------------------------------
Confidence 6654443221 0
Q ss_pred cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH-HHHHHHHHHHHHHHH
Q 008060 433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA-ATANWISNLIVAQSF 511 (579)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~-~~~~~~g~~i~~~~~ 511 (579)
..+..++...+....+. ...+..+.+.+|.+|++.||++.|+. +..+.+|++++|.+.
T Consensus 311 --------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 311 --------------------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp --------------------SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 01111222222222211 11233467899999999999999994 888899999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060 512 LSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLP 549 (579)
Q Consensus 512 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (579)
|.+.+..|+...|.+.+++++++.++.++..||+++.+
T Consensus 370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99999889888999999998888887766677655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=5.9e-27 Score=253.35 Aligned_cols=164 Identities=18% Similarity=0.294 Sum_probs=141.2
Q ss_pred HHhhhhhhhhhhhhh-hhhhhcc------cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHH
Q 008060 41 LLFGYDTGVISGALL-YIRDDFK------SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVG 112 (579)
Q Consensus 41 ~~~~~~~~~~~~~lp-~i~~~~~------~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~ 112 (579)
+...+......+.++ .+.+++| .+..+. +++.+++.++..++++++|+++||+ |||+++.++.++.+++
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~ 98 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA---KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVG 98 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH---HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 333333333334444 5677888 888888 9999999999999999999999999 9999999999999999
Q ss_pred HHHHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhh---hHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060 113 AVIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST---NGFLITSGQFLSYLINLAFTRAPGTW 188 (579)
Q Consensus 113 ~ll~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~---~~~~~~iG~~ig~~l~~~l~~~~~~W 188 (579)
.++.++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+..+ |
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~ 177 (524)
T 2xut_A 99 HAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-A 177 (524)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-H
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence 99999999 999999999999999999999999999999999999877666 899999999999999999988776 9
Q ss_pred hhHHHHhhHHHHHHHHHHHh
Q 008060 189 RWMLGVAGIPALLQFILMLL 208 (579)
Q Consensus 189 r~~f~i~~i~~l~~~i~~~~ 208 (579)
|+.|++.+++.++..+.+++
T Consensus 178 ~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 178 AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988876666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=1.7e-12 Score=136.48 Aligned_cols=170 Identities=18% Similarity=0.136 Sum_probs=141.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc--cchHHHHHHHHHHH-H
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILVADFLFF-V 111 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~--Grr~vl~~~~~l~~-i 111 (579)
+.+..+.............|.+.++ +|.+..+. +++.+...++..++.++.|+++||+ |||+.+..+..+.. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3344444444455556666766655 88888777 9999999999999999999999999 99999888877766 6
Q ss_pred HHHHHHhc--chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhccCcCcc
Q 008060 112 GAVIMAAA--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTW 188 (579)
Q Consensus 112 ~~ll~~~a--~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~~~~~W 188 (579)
+.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++......+ |..++|.+.+.+.+..+ |
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~ 412 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W 412 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-S
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 66666666 36778888889999999988898899999999999999999999999999 99999999999999887 9
Q ss_pred hhHHHHhhHHHHHHHHHHHhc
Q 008060 189 RWMLGVAGIPALLQFILMLLL 209 (579)
Q Consensus 189 r~~f~i~~i~~l~~~i~~~~l 209 (579)
+..|++.+++.++..++.+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877777665444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=5.3e-12 Score=131.94 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77888888889999999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred Ccccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCCh
Q 008060 152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESP 213 (579)
Q Consensus 152 p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp 213 (579)
|++.|+.+.++ ++....+|.+++|.+++++.+..+ ++..|.+.+++.++..++ +...||.+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999998 478888999999999999988666 888998888877777666 44456553
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.32 E-value=4.7e-11 Score=125.01 Aligned_cols=151 Identities=13% Similarity=-0.005 Sum_probs=123.9
Q ss_pred hhhhhhhhh-h-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 008060 49 VISGALLYI-R-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI 126 (579)
Q Consensus 49 ~~~~~lp~i-~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll 126 (579)
......|.+ . +.+|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 333444544 4 4558888777 9999999999999999999999999999999999999999999999888877655
Q ss_pred HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060 127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205 (579)
Q Consensus 127 ~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~ 205 (579)
.. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..++++..|++.++..++..+.
T Consensus 353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 54 8889999999999999999999976 888888777 5669999999999999987766898888766554444433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.29 E-value=1.2e-11 Score=131.73 Aligned_cols=167 Identities=13% Similarity=-0.003 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHH
Q 008060 287 QQFVGINTVMYYSPTIVQLS-----GFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLS 360 (579)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~ 360 (579)
....+++....+.+.|+++. .+.+....+++.....++.+++.++.|+++|| +|||+++..+..+..++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 24 WERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888775 55677888899999999999999999999999 8999999999888888877665
Q ss_pred HHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccc
Q 008060 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDE 440 (579)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (579)
...+
T Consensus 104 ~~~~---------------------------------------------------------------------------- 107 (491)
T 4aps_A 104 LPFG---------------------------------------------------------------------------- 107 (491)
T ss_dssp SCCS----------------------------------------------------------------------------
T ss_pred Hhhh----------------------------------------------------------------------------
Confidence 4211
Q ss_pred cccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060 441 SREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF--RGVCGGIAATANWISNLIVAQSFLSLTQAI 518 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~ 518 (579)
.+..++..++.+.+. ....+...++++|.+|++. |+.+.++.+....+|..++|.+.+.+.+..
T Consensus 108 -------------~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 108 -------------ASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA 173 (491)
T ss_dssp -------------TTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -------------HHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 122233333333222 2234566789999999988 788888899999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 519 GTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 519 g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
||++.|++.++..+++.++.++..+
T Consensus 174 g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 174 GYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999988888777766554433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.24 E-value=2.8e-11 Score=124.22 Aligned_cols=172 Identities=10% Similarity=0.016 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcc
Q 008060 286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE 365 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.............|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++.+++....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~- 87 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS- 87 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc-
Confidence 33344455556667777666665 5667788888899999999999999999999999999999988888877766532
Q ss_pred cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060 366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
T Consensus 88 -------------------------------------------------------------------------------- 87 (375)
T 2gfp_A 88 -------------------------------------------------------------------------------- 87 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 008060 446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFL 525 (579)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~ 525 (579)
.+..++...+ .+.......+...+++.|.+|+++|+.++++.+....+|..++|.+.+.+.+..||++.|.
T Consensus 88 --------~~~l~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 88 --------LTVLIAASAM-QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158 (375)
T ss_dssp --------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred --------HHHHHHHHHH-HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence 1122222222 2222223345667888999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCC
Q 008060 526 IFGVISVAALLFVLIFVPETKGL 548 (579)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~ 548 (579)
+.+++.++..+..++.+||++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHCcccCCC
Confidence 99988888877666667776543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.23 E-value=1.7e-10 Score=122.76 Aligned_cols=174 Identities=12% Similarity=0.049 Sum_probs=121.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI 115 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll 115 (579)
.....+........+....+.+.+..+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccch---hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 333334444444555556677777777766665 56666777888899999999999999999999988888877766
Q ss_pred HHhc-----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc-----
Q 008060 116 MAAA-----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP----- 185 (579)
Q Consensus 116 ~~~a-----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~----- 185 (579)
.+.. ++...++..-+..+.......+....+.+|.+|.+.|+.++++......+|..+++.+.+.+.+..
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~ 438 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH 438 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5432 222222222222222222345677789999999999999999999999999998888776664321
Q ss_pred CcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060 186 GTWRWMLGVAGIPALLQFIL-MLLLPES 212 (579)
Q Consensus 186 ~~Wr~~f~i~~i~~l~~~i~-~~~lpes 212 (579)
.++.+.|++.++++++..+. ++++|||
T Consensus 439 ~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 439 FHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 02566788888777777665 6889999
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.17 E-value=2.4e-10 Score=122.86 Aligned_cols=166 Identities=12% Similarity=-0.017 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHHHHH
Q 008060 289 FVGINTVMYYSPTIVQLSGF------ASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGVLSA 361 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
..+++....+++.|+++..+ .+....+++.....++.+++.++.|+++||+ |||+++..+.++..++.+++..
T Consensus 25 ~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~ 104 (524)
T 2xut_A 25 RFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI 104 (524)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 33456666778888876555 5777788888889999999999999999999 9999999988888887776665
Q ss_pred HhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccc
Q 008060 362 VFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDES 441 (579)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (579)
...
T Consensus 105 ~~~----------------------------------------------------------------------------- 107 (524)
T 2xut_A 105 FEH----------------------------------------------------------------------------- 107 (524)
T ss_dssp TSS-----------------------------------------------------------------------------
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 320
Q ss_pred ccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 008060 442 REWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI---AATANWISNLIVAQSFLSLTQAI 518 (579)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi---~~~~~~~g~~i~~~~~g~~~~~~ 518 (579)
..+..++..++.+. ......+...+++.|.+|++.|+...++ .+....+|.+++|.+.+.+.+..
T Consensus 108 -----------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 108 -----------SVQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp -----------CHHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred -----------cHHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01222333333332 2233456667899999999999876666 88899999999999999999989
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhcc
Q 008060 519 GTSWTFLIFGVISVAALLFVLIFVP 543 (579)
Q Consensus 519 g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
||++.|++.+++.+++.++.++..+
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988887777665544333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=31.95 E-value=14 Score=19.93 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.2
Q ss_pred hHhhhhccccchHH
Q 008060 88 IGGWMNDRFGRRTS 101 (579)
Q Consensus 88 ~~G~lsDr~Grr~v 101 (579)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888999999864
No 16
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.74 E-value=21 Score=23.80 Aligned_cols=23 Identities=39% Similarity=0.987 Sum_probs=17.6
Q ss_pred ccccccccccccccCCCC---CCCcc
Q 008060 392 AATADRWDCMKCLKASSP---DCGFC 414 (579)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~---~~~~~ 414 (579)
+-..|.|.|.+|.+.+.| +|.-|
T Consensus 6 ~~~eD~WkC~~C~k~N~Pl~ryC~rC 31 (53)
T 2cr8_A 6 SGSEDEWQCTECKKFNSPSKRYCFRC 31 (53)
T ss_dssp SCCSCCEECSSSCCEECSSCCBCTTT
T ss_pred CCCcceeecccccccCCCccchhHHH
Confidence 445799999999999887 45555
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=21.39 E-value=87 Score=29.95 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=7.5
Q ss_pred cccchhhHHHHHHHH
Q 008060 518 IGTSWTFLIFGVISV 532 (579)
Q Consensus 518 ~g~~~~~~~~~~~~~ 532 (579)
+++.|.+++.=++..
T Consensus 205 w~~~WVy~vgPiiGa 219 (301)
T 2zz9_A 205 WENHWIYWVGPIIGA 219 (301)
T ss_dssp CTTTTHHHHHHHHHH
T ss_pred CcceeeeeeHHHHHH
Confidence 445566665444433
Done!