Query 008060
Match_columns 579
No_of_seqs 392 out of 1319
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 17:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008060.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008060hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 8.8E-38 6.4E-42 327.5 27.7 406 26-542 20-431 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 1.9E-27 1.4E-31 243.8 24.7 385 36-550 12-408 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 8.4E-14 6.1E-18 140.8 14.6 140 72-212 262-403 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.2 5.6E-11 4.1E-15 121.9 16.5 150 55-208 274-429 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 9.1 1.4E+02 0.01 15.4 3.0 9 206-214 20-28 (30)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 6.7 6.8E+02 0.049 22.1 8.5 44 133-176 286-329 (383)
7 d1gq2a1 c.2.1.7 (A:280-580) Mi 5.5 64 0.0047 28.5 0.1 25 424-448 133-157 (298)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 5.5 3.5E+02 0.025 16.6 3.9 40 147-191 2-41 (53)
9 d1pj3a1 c.2.1.7 (A:280-573) Mi 5.2 68 0.005 28.2 0.1 25 424-448 136-160 (294)
10 d1q5wa_ g.41.11.1 (A:) Npl4 {R 4.5 1.4E+02 0.01 15.9 1.0 21 394-414 3-23 (31)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=8.8e-38 Score=327.53 Aligned_cols=406 Identities=13% Similarity=0.075 Sum_probs=300.0
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060 26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA 105 (579)
Q Consensus 26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~ 105 (579)
++++|.++..++++++..++++..++.+.|.+. |+|.+..+. |++.+++.+++.++++++|+++||+|||+++.++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 456888888899999999999999999888776 589999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060 106 DFLFFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181 (579)
Q Consensus 106 ~~l~~i~~ll~~~a----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l 181 (579)
.++.+++.++++++ ++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 99999999998876 47889999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccch
Q 008060 182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE 260 (579)
Q Consensus 182 ~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (579)
....++||+.|++.+++.++..++ +++.+|+|+........+. .++..+...+..+++....
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 238 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------------KNDYPDDYNEKAEQELTAK 238 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------------CCC-------------CCT
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------------hhhcccchhhccccccchh
Confidence 776656999999998877776666 5556666542211111100 0000000001111122222
Q ss_pred hhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008060 261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG 340 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 340 (579)
+...++.++++.++...... ++.....+....+.|.++++..+.+....+.......+..+++.++.|++.||++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 313 (447)
T d1pw4a_ 239 QIFMQYVLPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 313 (447)
T ss_dssp HHHHHHTSSCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHcCchHHHHHHHh-----hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc
Confidence 33455566666665433332 3334455667778899988877778888888889999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCC
Q 008060 341 RKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420 (579)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (579)
|++..........+....+.......
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 339 (447)
T d1pw4a_ 314 RGNRGATGVFFMTLVTIATIVYWMNP------------------------------------------------------ 339 (447)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSCC------------------------------------------------------
T ss_pred ccccccccchhHHHHHHHHHHHHhcc------------------------------------------------------
Confidence 88765544444333333332221110
Q ss_pred CCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHH
Q 008060 421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN 500 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~ 500 (579)
....+...+..++ .++...+..+..+.+..|.+|++.||++.|+.++.+
T Consensus 340 ------------------------------~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (447)
T d1pw4a_ 340 ------------------------------AGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388 (447)
T ss_dssp ------------------------------TTCHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred ------------------------------cccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 1112222333222 223333334566788899999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060 501 WIS-NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV 542 (579)
Q Consensus 501 ~~g-~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (579)
+++ .+++|.+.|.+.|..|+...|++.+++++++.++.+++.
T Consensus 389 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 566899999999999999999998888888877765543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=1.9e-27 Score=243.82 Aligned_cols=385 Identities=11% Similarity=0.043 Sum_probs=254.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060 36 AGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114 (579)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l 114 (579)
+.+..+...+......+.+|. +.+++|.+..+. |++.+++.++..++++++|+++||+|||++++++..+..++..
T Consensus 12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~ 88 (417)
T d1pv7a_ 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 334445555566667777776 677899998888 9999999999999999999999999999999999999999888
Q ss_pred HHHhcchhhHH----HHHHHHHHhhchhhhhhHhHhhhhcCCc--ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060 115 IMAAAPNPGAL----ITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW 188 (579)
Q Consensus 115 l~~~a~~~~~l----l~~R~l~Gig~g~~~~~~~~~l~e~~p~--~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W 188 (579)
+..+..+.... ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+. +|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 166 (417)
T d1pv7a_ 89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NN 166 (417)
T ss_dssp HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CH
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cc
Confidence 88877665443 4455555555555555554444444332 3456677778888899999999999998876 35
Q ss_pred hhHHHHhhHH-HHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060 189 RWMLGVAGIP-ALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL 267 (579)
Q Consensus 189 r~~f~i~~i~-~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
+..+...... .+...+.++..+|+|+... +.+ ++++..++.......+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------------~~~~~~~~~~~~~~~~~ 216 (417)
T d1pv7a_ 167 QFVFWLGSGCALILAVLLFFAKTDAPSSAT---VAN---------------------------AVGANHSAFSLKLALEL 216 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCSSSC---SSH---------------------------HHHSCCCCCCHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhcccccchh---hhh---------------------------hhhhhcccccccccccc
Confidence 5555555544 4444444666666653110 000 00111112222333444
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060 268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL 344 (579)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 344 (579)
++.+..+........... .........+.+..... ..+....+.......++..++..+.+++.||.++|+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 291 (417)
T d1pv7a_ 217 FRQPKLWFLSLYVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp TTSSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH
T ss_pred cccccccchhhhhHHHHH-----HHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc
Confidence 444444333332222211 11122222222222211 1233445566667777788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060 345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG 424 (579)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (579)
+..+..+..++.+++....+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 311 (417)
T d1pv7a_ 292 LLLAGTIMSVRIIGSSFATS------------------------------------------------------------ 311 (417)
T ss_dssp HHHHHHHHHHHHHHHHTCCC------------------------------------------------------------
T ss_pred hhhhHHHHHHhhhccccccc------------------------------------------------------------
Confidence 98888888777766554311
Q ss_pred cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH-HHHHHHH
Q 008060 425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA-ATANWIS 503 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~-~~~~~~g 503 (579)
.+...+...+...+.+ ...+...++..|.+|++.|+++.|+. +....+|
T Consensus 312 -----------------------------~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (417)
T d1pv7a_ 312 -----------------------------ALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred -----------------------------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 2233333333333333 23456678899999999999999985 5567799
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCCh
Q 008060 504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPI 550 (579)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (579)
.+++|.+.|.+.|..|++.+|++.++++++..++..+.+++++..+.
T Consensus 362 ~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 99999999999999999999999999999888887777776665554
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.49 E-value=8.4e-14 Score=140.82 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060 72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS 151 (579)
Q Consensus 72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~ 151 (579)
+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccchhhhhhh-HHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060 152 PAKIRGALVSTN-GFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES 212 (579)
Q Consensus 152 p~~~R~~~~~~~-~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes 212 (579)
|+++|+++.++. +....+|..++|.+++++.+..+ |++.|++.+++.++..++ .+.++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999975 56778999999999999999887 999999998877776666 4555443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.23 E-value=5.6e-11 Score=121.86 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=116.4
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH---HHHHHHh--cchhhHHHHHH
Q 008060 55 LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV---GAVIMAA--APNPGALITGR 129 (579)
Q Consensus 55 p~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i---~~ll~~~--a~~~~~ll~~R 129 (579)
..+.+.++.+..+. ++..+...++..++.++.|+++||++||+..........+ +.++... ..+.+..++.-
T Consensus 274 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T d1pw4a_ 274 TYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 350 (447)
T ss_dssp HHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred hhcccccccccchh---hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34556677877777 8999999999999999999999999987654433333222 2222222 35677778888
Q ss_pred HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHh
Q 008060 130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL 208 (579)
Q Consensus 130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~ 208 (579)
++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+++.+..+ |+..|++.+...++..++..+
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence 8899998888888999999999999999999998877766 56778999999999887 999998888776666665433
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.13 E-value=1.4e+02 Score=15.42 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=5.8
Q ss_pred HHhccCChh
Q 008060 206 MLLLPESPR 214 (579)
Q Consensus 206 ~~~lpesp~ 214 (579)
..+++|+||
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 456677775
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.72 E-value=6.8e+02 Score=22.11 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=17.3
Q ss_pred HhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060 133 GLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL 176 (579)
Q Consensus 133 Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~ 176 (579)
|+..+........++.+..+-++---+.++...+.-.|.+..++
T Consensus 286 G~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~gl 329 (383)
T d1u7ga_ 286 GVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGI 329 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHH
Confidence 44333333333333333333333334444444444444333333
No 7
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=5.51 E-value=64 Score=28.48 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=20.9
Q ss_pred ccccccCcccccccccccccccccC
Q 008060 424 GACLISNSTVKDLCHDESREWYTRG 448 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (579)
-++-+|||+++.+|++++-+..+.|
T Consensus 133 IIFaLSNPt~~~E~~~~~a~~wt~G 157 (298)
T d1gq2a1 133 IIFALSNPTSKAECTAEQLYKYTEG 157 (298)
T ss_dssp EEEECCSSGGGCSSCHHHHHHHTTT
T ss_pred EEEEccCCCCcCCCCHHHHhhhccc
Confidence 4788999999999999987766554
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.47 E-value=3.5e+02 Score=16.61 Aligned_cols=40 Identities=13% Similarity=-0.000 Sum_probs=21.7
Q ss_pred hhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060 147 ISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM 191 (579)
Q Consensus 147 l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~ 191 (579)
++...-+++...+..+.-+....|.+-+..+. ++. +||.+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl~lv-y~T----DWkli 41 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAVGLV-WAT----DWRLI 41 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----TCHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhheeee-eee----hHHHH
Confidence 34555566666666666666666655443333 222 48764
No 9
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.22 E-value=68 Score=28.23 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.5
Q ss_pred ccccccCcccccccccccccccccC
Q 008060 424 GACLISNSTVKDLCHDESREWYTRG 448 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (579)
=++-+|||+++.+|++++-+..+.|
T Consensus 136 IIFaLSNPt~~~e~~~~~a~~~t~g 160 (294)
T d1pj3a1 136 VIFALSNPTAQAECTAEEAYTLTEG 160 (294)
T ss_dssp EEEECCSSGGGCSCCHHHHHHHTTT
T ss_pred EEEEccCCCCcCCcCHHHHHhhccC
Confidence 4788999999999999977766544
No 10
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.52 E-value=1.4e+02 Score=15.94 Aligned_cols=21 Identities=33% Similarity=0.937 Sum_probs=12.9
Q ss_pred ccccccccccccCCCCCCCcc
Q 008060 394 TADRWDCMKCLKASSPDCGFC 414 (579)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~ 414 (579)
.++.|.|.-|--.++|.|+.|
T Consensus 3 ~samWsC~HCTf~N~pgtd~C 23 (31)
T d1q5wa_ 3 TSAMWACQHCTFMNQPGTGHC 23 (31)
T ss_dssp CCCCEECSSSCCEECTTCSBC
T ss_pred ccceeEeeeeeeecCCCCCcc
Confidence 456788777766666654333
Done!