BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008063
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 133/517 (25%), Positives = 228/517 (44%), Gaps = 66/517 (12%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAA-DGTNVLNLQGKVVVPGFID 107
+ NG I+T + L + I +G+++ G+ +++ G +++L+GK V+P F D
Sbjct: 6 LINGTIYTSFNPLKKVSGLVISHGKVIYAGDSEVAKKIVELSGGEIVDLKGKYVMPAFFD 65
Query: 108 SHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAV---------KNSKKGSWIXXXXXXXX 158
SH+H G+ + V LRG +E ++R+K + G W
Sbjct: 66 SHLHLDELGMSLEMVDLRGAKSIEELIQRLKRGKGRIIFGFGWDQDELGEW--------- 116
Query: 159 XXXXXXPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE-DPNGGTIMKTS 217
P ++ I PV++ R H+ +AN L+L+ +T + D + G I + S
Sbjct: 117 ------PTRKELNAI--DKPVFIYRKCFHVAVANDKMLELLNLTPSKDFDEDTGIIKEKS 168
Query: 218 SGEPTGLLIDAAMKLILPWIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQ 277
++ A K+I + ++V+ GV +V S
Sbjct: 169 --------LEEARKVINERV--LTVEDYVYYIKRAQEHLLDLGVKSV----------SFM 208
Query: 278 LSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFAD 337
E + K+ I V + E L + G + + + GVK F D
Sbjct: 209 SVNEKALRALFYLEREGKLSINVFAYVTPEVLDKLESI--GLGRFQGNRLTIAGVKLFTD 266
Query: 338 GSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD 397
GSLG+ +AL +PY+D+P G VME E L+ +T + GL VAIHAIGD+A D+ LD
Sbjct: 267 GSLGARTALLSKPYSDDPSTSGQLVMEREELIRITEKARSLGLDVAIHAIGDKALDVALD 326
Query: 398 MYKSVVVTTGKRDQRF--RIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLG 455
+++ TTG F RIEHA + R + + S+QP ++ D +++G
Sbjct: 327 VFE----TTG-----FPGRIEHASLVRDDQLERVKNLKVRLSVQPHFIISDW-WIVERVG 376
Query: 456 VDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSER-I 514
+R + Y F+ +D P+ +P + A+ R + ++ +
Sbjct: 377 EERV-KWVYRFKD-LMKVAELGFSTDSPIEPADPWLTVDAAVNRGKGKVKLYELTKDQAL 434
Query: 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551
+ DAL ++T +AR L +D+G L PG A+++IL
Sbjct: 435 DIKDALHSYTYGSARVS-LASDIGKLEPGFKAEYIIL 470
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 135/517 (26%), Positives = 219/517 (42%), Gaps = 73/517 (14%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAA-DGTNVLNLQGKVVVPGFID 107
+ NG I+T + + I N R++ G+ S ++A G +++L+GK V+P F D
Sbjct: 40 LINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFD 99
Query: 108 SHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAV---------KNSKKGSWIXXXXXXXX 158
SH+H G+ + V LRGV +E V RVK+ + G W
Sbjct: 100 SHLHLDELGMSLEMVDLRGVKSMEELVERVKKGRGRIIFGFGWDQDELGRW--------- 150
Query: 159 XXXXXXPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSS 218
P +D I PV+L R H+ + NS +++ + NL +
Sbjct: 151 ------PTREDLDVID--RPVFLYRRCFHVAVMNS---KMIDLLNLKPSKD--------F 191
Query: 219 GEPTGLLIDAAMKLILPWIPE--VSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESV 276
E TG++ + A++ I E ++V GV +V G GE
Sbjct: 192 DESTGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSV---GFMSVGEKA 248
Query: 277 QLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADL-INK-TGHVLSDWVYLGGVKA 334
+ + ++K+ V + E L +L + K G L W GV
Sbjct: 249 LKALFEL-------EREGRLKMNVFAYLSPELLDKLEELNLGKFEGRRLRIW----GVXL 297
Query: 335 FADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDL 394
F DGSLG+ +AL EPY D P G VM + ++ + + GL VA+HAIGD+A D+
Sbjct: 298 FVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVHAIGDKAVDV 357
Query: 395 VLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKL 454
LD ++ + RIEHA + R + + S QP ++ D ++
Sbjct: 358 ALDAFEEAEFSG-------RIEHASLVRDDQLERIKELKVRISAQPHFIVSDW-WIVNRV 409
Query: 455 GVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERI 514
G +RA + +Y ++ +D P+ +P +I A+ R P ER+
Sbjct: 410 GEERA-KWAYRLKT-LSSITKLGFSTDSPIEPADPWVSIDAAVNRYVVD------PGERV 461
Query: 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551
S +AL +T +A+ E D+G L G A+++IL
Sbjct: 462 SREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIIL 497
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 16/71 (22%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAAD-----GTNVLNLQGKV 100
DL++ NG+I T D ++A +A+ NG+ VQ +AA G+ V++ +G
Sbjct: 4 DLIIKNGIICTASD--IYAAEIAVNNGK---------VQLIAASIDPSLGSEVIDAEGAF 52
Query: 101 VVPGFIDSHVH 111
+ PG ID+HVH
Sbjct: 53 ITPGGIDAHVH 63
>pdb|3GGM|A Chain A, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|B Chain B, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|C Chain C, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
pdb|3GGM|D Chain D, Crystal Structure Of Bt9727_2919 From Bacillus
Thuringiensis Subsp. Northeast Structural Genomics
Target Bur228b
Length = 81
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++ NG I T D S ++AI +G I +VG + A + T ++L+ K +PG
Sbjct: 5 DMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNS-ATEKTKKIDLKRKRAIPGL 63
Query: 106 IDSHVHFIPG 115
DSH+H I G
Sbjct: 64 NDSHIHVIRG 73
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQ 118
+ NG+I++V S + V++L G+++ PGFID HVH I GG Q
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGQ 77
>pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
>pdb|1RJQ|A Chain A, The Crystal Structure Of The D-Aminoacylase Mutant D366a
pdb|1RJR|A Chain A, The Crystal Structure Of The D-Aminoacylase D366a Mutant
In Complex With 100mm Zncl2
pdb|1RK5|A Chain A, The D-Aminoacylase Mutant D366a In Complex With 100mm
Cucl2
Length = 496
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
>pdb|1M7J|A Chain A, Crystal Structure Of D-Aminoacylase Defines A Novel Subset
Of Amidohydrolases
Length = 484
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 10 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 64
Query: 106 IDSHVH 111
IDSH H
Sbjct: 65 IDSHTH 70
>pdb|1RJP|A Chain A, Crystal Structure Of D-Aminoacylase In Complex With 100mm
Cucl2
pdb|1RK6|A Chain A, The Enzyme In Complex With 50mm Cdcl2
pdb|1V51|A Chain A, The Functional Role Of The Binuclear Metal Center In D-
Aminoacylase. One-Metal Activation And Second-Metal
Attenuation
Length = 496
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +++ G + G ++ + ++ RI +VG+ SA + +++ GKVV PGF
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-----SSARRRIDVAGKVVSPGF 76
Query: 106 IDSHVH 111
IDSH H
Sbjct: 77 IDSHTH 82
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ NG I T D+ + + IK+G+I +G Q L G V++ +G V PG ID
Sbjct: 4 IIKNGTIVTATDT--YEAHLLIKDGKIAMIG-----QNLEEKGAEVIDAKGCYVFPGGID 56
Query: 108 SHVHFIPGGLQMARVKLRGVSHKDEF 133
H H + L G KD+F
Sbjct: 57 PHTHL--------DMPLGGTVTKDDF 74
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116
+ NG+I++V S + V++L G+++ PGFID HVH I GG
Sbjct: 30 VANGKIIAVA--SNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG 75
>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
Resolution
pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
Acetohydroxamic Acid At 1.55 A Resolution
pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
Structure
pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
Complex With Citrate
Length = 570
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLNLQ 97
DL++TN +I D + ++ + +K+G IV +G + T V+ +
Sbjct: 68 DLLLTNALIL--DYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAE 125
Query: 98 GKVVVPGFIDSHVHFI 113
GK+V G ID+HVHFI
Sbjct: 126 GKIVTAGGIDTHVHFI 141
>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
Structure
Length = 570
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLNLQ 97
DL++TN +I D + ++ + +K+G IV +G + T V+ +
Sbjct: 68 DLLLTNALIL--DYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAE 125
Query: 98 GKVVVPGFIDSHVHFI 113
GK+V G ID+HVHFI
Sbjct: 126 GKIVTAGGIDTHVHFI 141
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 55 FTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI- 113
+ ++ + A + +++G+I V + + AD V+++ GK++ PG +D HVH
Sbjct: 10 YMNEEGKIVATDLLVQDGKIAKVA-----ENITADNAEVIDVNGKLIAPGLVDVHVHLRE 64
Query: 114 PGG 116
PGG
Sbjct: 65 PGG 67
>pdb|3QGA|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGA|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae
pdb|3QGK|C Chain C, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|F Chain F, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|I Chain I, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|L Chain L, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|O Chain O, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
pdb|3QGK|R Chain R, 3.0 A Model Of Iron Containing Urease Urea2b2 From
Helicobacter Mustelae (Refined W NO ORDERED SOLVENT)
Length = 568
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYS--------AVQQLAADGTNVLNLQ 97
DLV+TN +I D + ++ + IKNG+I +G + GT L +
Sbjct: 66 DLVITNALII--DYTGIYKADIGIKNGKIHGIGKAGNKDMQDGVTPHMVVGVGTEALAGE 123
Query: 98 GKVVVPGFIDSHVHFI 113
G ++ G IDSH HF+
Sbjct: 124 GMIITAGGIDSHTHFL 139
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAAD-GTNVLNLQGKVVVPGF 105
L++ NG I T D S AD A + I +G Q L A GT V++ GK V PGF
Sbjct: 2 LLIKNGEIITAD-SRYKADIYA-EGETITRIG-----QNLEAPPGTEVIDATGKYVFPGF 54
Query: 106 IDSHVH-FIP 114
ID HVH ++P
Sbjct: 55 IDPHVHIYLP 64
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D +T G I G + + +++GRI ++G A + + GK+V PGF
Sbjct: 8 DFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-----HPARHAWDASGKIVAPGF 62
Query: 106 IDSHVH 111
ID H H
Sbjct: 63 IDVHGH 68
>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
Imidazole-4- Acetic Acid Sodium Salt, A Substrate
Homologue
Length = 421
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR--VKL 124
+ I +IV G A AD +++ G++V PG +D H H + GG + +KL
Sbjct: 40 VGIHEQKIVFAGQKGAEAGYEAD--EIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKL 97
Query: 125 RGVSHKD 131
+G+S+ D
Sbjct: 98 QGISYLD 104
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
DL++ NG + +++ + +A+K G+I ++G Q D V + G VV PG
Sbjct: 24 DLIIKNGTVILENEARVV--DIAVKGGKIAAIG------QDLGDAKEVXDASGLVVSPGX 75
Query: 106 IDSHVHF 112
+D+H H
Sbjct: 76 VDAHTHI 82
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 52 GVIFTGD--DSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSH 109
G I +GD +L AD++ +++G I ++G ++ A D T +++ G V PG +D+H
Sbjct: 10 GKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKD-AGDAT-IIDAAGSTVTPGLLDTH 67
Query: 110 VHFIPGGLQMARVK 123
VH + GG R K
Sbjct: 68 VH-VSGGDYAPRQK 80
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 66 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 123
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 124 IVTAGGIDTHIHWI 137
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|3HPA|A Chain A, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
pdb|3HPA|B Chain B, Crystal Structure Of An Amidohydrolase Gi:44264246 From An
Evironmental Sample Of Sargasso Sea
Length = 479
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPG 104
LV V+ T DD+ L + I++ RIV+VG + + + A + VL+L+G +V+PG
Sbjct: 32 LVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADE---VLDLRGHLVIPG 88
Query: 105 FIDSHVHF 112
+++H H
Sbjct: 89 LVNTHHHM 96
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+H+H+I
Sbjct: 125 IVTAGGIDTHIHWI 138
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 518 DALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQA 577
D L T++ A+ LE+ +GS+ PGK AD V+ W + + +E Y+ GV+
Sbjct: 331 DLLKILTVNPAKILGLEDRIGSIEPGKDADLVV-----WSGHPFDXKSVVERVYIDGVEV 385
Query: 578 Y 578
+
Sbjct: 386 F 386
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101
+L ++ N +F S F + + NG++ VG + + +++L GK +
Sbjct: 2 SLSVKILFKNATVFP-ITSRPFKGDVLVSNGKVEKVG-----ENIEDPDAEIVDLTGKFL 55
Query: 102 VPGFIDSHVH 111
PGF+D+H H
Sbjct: 56 FPGFVDAHSH 65
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+V NG + +L + ++NG+I + V + +++ +G +V PGFI
Sbjct: 4 LIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPE-----AEIIDAKGLIVCPGFI 58
Query: 107 DSHVHF 112
D HVH
Sbjct: 59 DIHVHL 64
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Query: 69 IKNGRIVSVGNY---------SAVQQLA-----ADGTNVLNLQGKVVVPGFIDSHVHFI- 113
IKNG+++ G ++Q+A ++G ++++ +G V PGF+D HVH
Sbjct: 4 IKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLRE 63
Query: 114 PGG 116
PGG
Sbjct: 64 PGG 66
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+V NG + +L + ++NG+I + V + +++ +G +V PGFI
Sbjct: 49 LIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVPE-----AEIIDAKGLIVCPGFI 103
Query: 107 DSHVHF 112
D HVH
Sbjct: 104 DIHVHL 109
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADGTNVLNLQ 97
D V+TN VI D + + + IK+G I S+G N + T V+ +
Sbjct: 338 DTVITNAVII--DYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGE 395
Query: 98 GKVVVPGFIDSHVHFI 113
G +V G ID HVH+I
Sbjct: 396 GLIVTAGAIDCHVHYI 411
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADGTNVLNLQ 97
D V+TN VI D + + + IK+G I S+G N + T V+ +
Sbjct: 338 DTVITNAVII--DYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGE 395
Query: 98 GKVVVPGFIDSHVHFI 113
G +V G ID HVH+I
Sbjct: 396 GLIVTAGAIDCHVHYI 411
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG--------NYSAVQQLAADGTNVLNLQ 97
D V+TN VI D + + + IK+G I S+G N + T V+ +
Sbjct: 338 DTVITNAVII--DYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGE 395
Query: 98 GKVVVPGFIDSHVHFI 113
G +V G ID HVH+I
Sbjct: 396 GLIVTAGAIDCHVHYI 411
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVG-NYSAVQQLAADGTNVLNLQGKVVVPGFI 106
V+ G I T D L + + ++ GRIV +G N S G L+ G V+PG I
Sbjct: 4 VIKGGTIVTAD--LTYKADVKVEGGRIVEIGPNLS--------GAETLDATGCYVMPGGI 53
Query: 107 DSHVHF 112
D H H
Sbjct: 54 DPHTHL 59
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125
+A++NGRI G S + + + G+ + P ID H H + GG + ++R
Sbjct: 42 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMR 100
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550
R+++ + L A T +AA+A L + G+L GK ADF I
Sbjct: 352 RMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAI 389
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125
+A++NGRI G S + + + G+ + P ID H H + GG + ++R
Sbjct: 44 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMR 102
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550
R+++ + L A T +AA+A L + G+L GK ADF I
Sbjct: 354 RMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAI 391
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ +G I + G Y + A G + +++ +++VPGFID H+H
Sbjct: 40 VTDGVIKAFGPYEKIAA-AHPGVEITHIKDRIIVPGFIDGHIHL 82
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 524 TLSAARACFLENDVGSLSPGKIADFVIL 551
TL A ++++ +G+ PGK ADFV L
Sbjct: 382 TLGGAEGLYIDDKLGNFEPGKEADFVAL 409
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D+++ NG I T D + AD + IK+G+I +G + D G+ V PG
Sbjct: 2 DIIIKNGTIVTAD-GISRAD-LGIKDGKITQIGGALGPAERTIDAA------GRYVFPGG 53
Query: 106 IDSHVH 111
ID H H
Sbjct: 54 IDVHTH 59
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ G DD AD + I+NG I VG + + G V++ GK+V+PG ID
Sbjct: 32 ILIKGGKVVNDDCTHEAD-VYIENGIIQQVGR----ELMIPGGAKVIDATGKLVIPGGID 86
Query: 108 SHVHF 112
+ HF
Sbjct: 87 TSTHF 91
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 51 NGVIFTGDD-SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSH 109
NG + D LL + I++G I V + + + + +V++++GK ++PG ID H
Sbjct: 10 NGALLDPDHPDLLQGFEILIEDGFIREVSD----KPIKSSNAHVIDVKGKTIMPGLIDLH 65
Query: 110 VHFIPGGLQMAR--------VKLRGVSHKDEFVRRVKEAVKNSKKGSW 149
VH + + R V LR V +RR V+++ +
Sbjct: 66 VHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAGGAGY 113
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
++ G DD AD + I+NG I VG + + G V++ GK+V+PG ID
Sbjct: 11 ILIKGGKVVNDDCTHEAD-VYIENGIIQQVGR----ELMIPGGAKVIDATGKLVIPGGID 65
Query: 108 SHVHF 112
+ HF
Sbjct: 66 TSTHF 70
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDS 108
+ G + T D+ + + I+ R+V++G+ QL+ +G ++ G V+PG ID
Sbjct: 5 IRGGTVVTAADT--YQADVLIEGERVVAIGH-----QLSVNGAEEIDATGCYVIPGGIDP 57
Query: 109 HVHF 112
H H
Sbjct: 58 HTHL 61
>pdb|2OOF|A Chain A, The Crystal Structure Of 4-imidazolone-5-propanoate
Amidohydrolase From Environmental Sample
pdb|2Q09|A Chain A, Crystal Structure Of Imidazolonepropionase From
Environmental Sample With Bound Inhibitor
3-(2,5-Dioxo-Imidazolidin-4-Yl)-Propionic Acid
Length = 416
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 58 DDSLLFADSMAIKNGRIVSV-------GNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHV 110
D LL ++ + GRI ++ G Y A Q + +GK+V PG ID H
Sbjct: 23 DYGLLEPHALGVHEGRIHALVPXQDLKGPYPAHWQ---------DXKGKLVTPGLIDCHT 73
Query: 111 HFIPGGLQMARVKLR 125
H I G + +LR
Sbjct: 74 HLIFAGSRAEEFELR 88
>pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant
Length = 567
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA------VQQLAADGTNVLNLQGK 99
DLV+TN +I D + + +K+GRI ++G V T V+ +GK
Sbjct: 67 DLVLTNALIV--DHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGK 124
Query: 100 VVVPGFIDSHVHFI 113
+V G ID+ +H+I
Sbjct: 125 IVTAGGIDTAIHWI 138
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 94 LNLQGKVVVPGFIDSHVHFI 113
++++GK V+PGFID HVH +
Sbjct: 50 IDVRGKTVMPGFIDCHVHVL 69
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIE 568
I +E + +AL + T AA ++ +G ++ G IAD V+L + ED
Sbjct: 338 IRAEVLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIGVVADEGAR 397
Query: 569 ATYV 572
YV
Sbjct: 398 VEYV 401
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 94 LNLQGKVVVPGFIDSHVHFI 113
++++GK V+PGFID HVH +
Sbjct: 50 IDVRGKTVMPGFIDCHVHVL 69
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIE 568
I +E + +AL + T AA ++ +G ++ G IAD V+L + ED
Sbjct: 338 IRAEVLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIGVVADEGAR 397
Query: 569 ATYV 572
YV
Sbjct: 398 VEYV 401
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVV 101
++ +D ++ G DD +AD + +++G I +G + G + ++V
Sbjct: 22 SMTSDRLLIKGGKIVNDDQSFYAD-IYMEDGLIKQIGE----NLIVPGGVKTIEAHSRMV 76
Query: 102 VPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAV 141
+PG ID H F QM +G++ D+F + K A+
Sbjct: 77 IPGGIDVHTRF-----QMPD---QGMTSADDFFQGTKAAL 108
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGF 105
D++V N + + D + AD + +K+G++ ++ ++ + + ++ GK V+PG
Sbjct: 3 DVIVKNCRLVS-SDGITEADIL-VKDGKVAAISADTS----DVEASRTIDAGGKFVMPGV 56
Query: 106 IDSHVHFI 113
+D HVH I
Sbjct: 57 VDEHVHII 64
>pdb|3BE7|A Chain A, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|B Chain B, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|C Chain C, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|D Chain D, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|E Chain E, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|F Chain F, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|G Chain G, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
pdb|3BE7|H Chain H, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase
Length = 408
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+ + G + ++ AD + I+NG+I +G ++ V+++ +++PG +
Sbjct: 9 LIKSKGYLDIQTGEIIKAD-LLIRNGKIAEIG------KINTKDATVISIPDLILIPGLM 61
Query: 107 DSHVHFI 113
DSHVH +
Sbjct: 62 DSHVHIV 68
>pdb|3DUG|A Chain A, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|B Chain B, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|C Chain C, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|D Chain D, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|E Chain E, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|F Chain F, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|G Chain G, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
pdb|3DUG|H Chain H, Crystal Structure Of Zn-Dependent Arginine
Carboxypeptidase Complexed With Zinc
Length = 408
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L+ + G + ++ AD + I+NG+I +G ++ V+++ +++PG +
Sbjct: 9 LIKSKGYLDIQTGEIIKAD-LLIRNGKIAEIG------KINTKDATVISIPDLILIPGLM 61
Query: 107 DSHVHFI 113
DSHVH +
Sbjct: 62 DSHVHIV 68
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
+++ NG + +D F + ++NG I + ++ G V++ K+++PG I
Sbjct: 10 ILIKNGTVV--NDDRYFKSDVLVENGIIKEISKNIEPKE----GIKVVDATDKLLLPGGI 63
Query: 107 DSHVHF 112
D+H HF
Sbjct: 64 DTHTHF 69
>pdb|2OGJ|A Chain A, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|B Chain B, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|C Chain C, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|D Chain D, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|E Chain E, Crystal Structure Of A Dihydroorotase
pdb|2OGJ|F Chain F, Crystal Structure Of A Dihydroorotase
Length = 417
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 43 LEADLVVTN--GVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKV 100
L+A +++TN V F S D + +G+I +VG SA+Q A T ++ +G
Sbjct: 13 LQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVG--SALQ--APADTQRIDAKGAF 68
Query: 101 VVPGFIDSHVHFIPGGLQMA 120
+ PG++D HVH GG ++
Sbjct: 69 ISPGWVDLHVHIWHGGTDIS 88
>pdb|1CII|A Chain A, Colicin Ia
Length = 602
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 393 DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARK 452
D + YK+ + K ++ R E + L++ AAR D+ + +++ + D AD R+
Sbjct: 52 DKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGN-ADAADITRQ 110
Query: 453 KLGVDRAERESYLFQS 468
+ + +AE Y F++
Sbjct: 111 EFRLLQAELREYGFRT 126
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFI 106
L++ G + DD AD + +++G + ++G+ A G VL+ GK+V+PG I
Sbjct: 29 LLIRGGRVVN-DDFSEVADVL-VEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGI 86
Query: 107 DSHVHF 112
D+H H
Sbjct: 87 DTHTHM 92
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine Carboxypeptidase
Cc2672 From Caulobacter Crescentus Cb15 Complexed With
N-Methyl Phosphonate Derivative Of L-Arginine
Length = 403
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 69 IKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112
+ +GRI S+G G ++L G ++PG ID HVH
Sbjct: 27 VTDGRITSIGKKG---DAVPAGATAVDLPGVTLLPGLIDMHVHL 67
>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
Bound Zn
Length = 451
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 519 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554
AL TL+ ARA LE +GSL GK AD V S
Sbjct: 345 ALRMATLNGARALGLERLIGSLEAGKAADLVAFDLS 380
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 88 ADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVR 135
ADG N++N + +HVH +P +R V H+ +F R
Sbjct: 112 ADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFDIRFVQHEPDFTR 159
>pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein
Olei01672_1_465 From Oleispira Antarctica
Length = 468
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548
I +AL TL ARA +++ GSL PGK AD
Sbjct: 365 IPAIEALTXATLGGARALGIDDITGSLKPGKAADI 399
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 484 VADINPLCAIRTAMKRIP--PGWDNAWIPSERISLTDALIAHTL 525
D++PL A R M+ IP PG D +P+ ++ L D +IAH L
Sbjct: 1127 CKDMSPLVAAR--MRHIPLFPGSDWRDLPNIQVRLGDGVIAHKL 1168
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 484 VADINPLCAIRTAMKRIP--PGWDNAWIPSERISLTDALIAHTLS 526
D++PL A R M+ IP PG D +P+ ++ L D +IAH L
Sbjct: 688 CKDMSPLVAAR--MRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQ 730
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 484 VADINPLCAIRTAMKRIP--PGWDNAWIPSERISLTDALIAHTLS 526
D++PL A R M+ IP PG D +P+ ++ L D +IAH L
Sbjct: 769 CKDMSPLVAAR--MRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQ 811
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDS 108
+ NG + T D+ + + I ++V++G+ L A V++ G ++PG ID
Sbjct: 5 IRNGTVVTASDT--YQADVLIDGEKVVAIGS-----DLQATDAEVIDATGYYLLPGGIDP 57
Query: 109 HVHF 112
H H
Sbjct: 58 HTHL 61
>pdb|3EGJ|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3EGJ|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae.
pdb|3IV8|A Chain A, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|B Chain B, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|C Chain C, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
pdb|3IV8|D Chain D, N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio
Cholerae Complexed With Fructose 6-Phosphate
Length = 381
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 49 VTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFID 107
+TN I+TG+D +L ++ I +I +V ++ L ++ NV++L G + PGFID
Sbjct: 7 LTNCKIYTGND-VLVKHAVIINGDKIEAV---CPIESLPSE-MNVVDLNGANLSPGFID 60
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 415 IEHAQHLASGTAAR--FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXX 472
I H L S R F +G V + L D A +A L + AE Q
Sbjct: 219 IRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAA---LLMSEAEASRRGIQPLGRI 275
Query: 473 XXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACF 532
G D V P+ A R A++R GW +I D + AH AA+AC
Sbjct: 276 VSWATVGVDPKVMGTGPIPASRKALER--AGW--------KIGDLDLVEAHEAFAAQACA 325
Query: 533 LENDVG 538
+ D+G
Sbjct: 326 VNKDLG 331
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 415 IEHAQHLASGTAAR--FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXX 472
I H L S R F +G V + L D A +A L + AE Q
Sbjct: 219 IRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAA---LLMSEAEASRRGIQPLGRI 275
Query: 473 XXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACF 532
G D V P+ A R A++R GW +I D + AH AA+AC
Sbjct: 276 VSWATVGVDPKVMGTGPIPASRKALER--AGW--------KIGDLDLVEAHEAFAAQACA 325
Query: 533 LENDVG 538
+ D+G
Sbjct: 326 VNKDLG 331
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 317 NKTGHVLSDWV--YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME-LESLLSMTM 373
N G +LSD +GG+ G++G +A+F + P G + ++LS M
Sbjct: 224 NLLGDILSDLAAGLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAM 283
Query: 374 ASDKSGLQVAIHAIGDRANDLVLD 397
D G + A + ++A DLVL+
Sbjct: 284 MLDYLGEKEAAKRV-EKAVDLVLE 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,776,031
Number of Sequences: 62578
Number of extensions: 597428
Number of successful extensions: 1435
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 135
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)