Query 008063
Match_columns 579
No_of_seqs 129 out of 1624
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1574 Predicted metal-depend 100.0 9.3E-72 2E-76 583.2 54.2 526 44-579 4-533 (535)
2 cd01300 YtcJ_like YtcJ_like me 100.0 1.4E-60 3E-65 511.9 52.1 475 66-550 1-479 (479)
3 PF07969 Amidohydro_3: Amidohy 100.0 4.5E-41 9.8E-46 354.1 10.0 389 100-550 1-404 (404)
4 PRK06687 chlorohydrolase; Vali 100.0 1.5E-37 3.2E-42 327.8 32.4 379 47-578 2-409 (419)
5 PRK09045 N-ethylammeline chlor 100.0 1.8E-37 3.9E-42 329.0 32.9 387 43-579 5-415 (443)
6 PRK15493 5-methylthioadenosine 100.0 6E-37 1.3E-41 323.2 34.0 378 45-578 1-409 (435)
7 PRK07228 N-ethylammeline chlor 100.0 1.1E-36 2.3E-41 323.9 34.9 377 45-578 1-413 (445)
8 PRK08204 hypothetical protein; 100.0 7.6E-37 1.7E-41 325.6 33.2 380 45-578 2-416 (449)
9 cd01298 ATZ_TRZ_like TRZ/ATZ f 100.0 7.5E-36 1.6E-40 315.4 33.6 375 47-578 1-405 (411)
10 PRK06380 metal-dependent hydro 100.0 3.1E-35 6.7E-40 310.2 36.2 369 45-578 1-399 (418)
11 PRK06038 N-ethylammeline chlor 100.0 2.8E-35 6.1E-40 310.6 35.1 372 45-578 2-400 (430)
12 PRK08203 hydroxydechloroatrazi 100.0 2.7E-35 5.9E-40 313.3 32.4 381 47-578 4-423 (451)
13 PRK07203 putative chlorohydrol 100.0 3.1E-34 6.8E-39 304.2 39.6 388 47-578 2-414 (442)
14 PRK06151 N-ethylammeline chlor 100.0 2.9E-35 6.3E-40 314.9 31.7 387 45-579 1-438 (488)
15 PRK12393 amidohydrolase; Provi 100.0 2.8E-34 6.2E-39 304.8 38.5 388 45-578 2-428 (457)
16 PRK09228 guanine deaminase; Pr 100.0 1.4E-34 3E-39 304.8 35.0 198 362-579 207-431 (433)
17 PRK09356 imidazolonepropionase 100.0 1.1E-34 2.4E-39 305.3 33.2 386 44-579 2-406 (406)
18 TIGR03314 Se_ssnA putative sel 100.0 4.1E-34 8.9E-39 302.2 36.8 384 47-578 1-413 (441)
19 PRK08393 N-ethylammeline chlor 100.0 5E-34 1.1E-38 300.8 34.5 379 45-578 1-399 (424)
20 cd01303 GDEase Guanine deamina 100.0 1.2E-34 2.6E-39 305.4 29.1 198 363-574 205-429 (429)
21 PRK08418 chlorohydrolase; Prov 100.0 6.2E-34 1.3E-38 297.3 32.7 368 47-577 2-407 (408)
22 PRK07213 chlorohydrolase; Prov 100.0 3.1E-33 6.6E-38 289.8 35.1 358 47-576 2-375 (375)
23 cd01293 Bact_CD Bacterial cyto 100.0 1E-33 2.2E-38 297.7 31.3 378 48-577 1-398 (398)
24 TIGR02967 guan_deamin guanine 100.0 5.1E-33 1.1E-37 291.9 33.8 193 362-574 182-401 (401)
25 PRK09229 N-formimino-L-glutama 100.0 5.6E-33 1.2E-37 295.3 31.7 200 362-578 212-431 (456)
26 COG1228 HutI Imidazolonepropio 100.0 6.1E-35 1.3E-39 300.0 15.6 182 361-579 215-402 (406)
27 cd01313 Met_dep_hydrolase_E Me 100.0 3.1E-32 6.6E-37 286.2 32.4 196 363-575 204-418 (418)
28 PRK07572 cytosine deaminase; V 100.0 1.8E-32 3.9E-37 288.9 28.6 384 45-579 2-402 (426)
29 PRK09230 cytosine deaminase; P 100.0 9.2E-32 2E-36 282.3 32.5 387 45-579 4-406 (426)
30 PRK05985 cytosine deaminase; P 100.0 1.4E-31 3.1E-36 279.7 32.8 371 45-579 2-389 (391)
31 TIGR02022 hutF formiminoglutam 100.0 6.1E-32 1.3E-36 286.6 30.4 200 362-578 212-431 (455)
32 TIGR01224 hutI imidazoloneprop 100.0 3E-32 6.5E-37 284.0 26.6 183 363-576 194-377 (377)
33 cd01312 Met_dep_hydrolase_D Me 100.0 1.8E-31 3.9E-36 276.0 31.4 191 363-575 160-381 (381)
34 PRK14085 imidazolonepropionase 100.0 8.1E-32 1.8E-36 280.3 27.9 350 45-557 1-366 (382)
35 PLN02942 dihydropyrimidinase 100.0 7.1E-31 1.5E-35 280.5 33.6 363 44-578 4-441 (486)
36 PRK13309 ureC urease subunit a 100.0 9.1E-31 2E-35 274.8 30.7 197 363-579 229-461 (572)
37 PRK07583 cytosine deaminase-li 100.0 1.2E-30 2.6E-35 275.9 30.6 387 43-578 9-422 (438)
38 cd01296 Imidazolone-5PH Imidaz 100.0 1E-30 2.2E-35 272.1 28.4 273 239-574 84-371 (371)
39 COG0402 SsnA Cytosine deaminas 100.0 5.7E-31 1.2E-35 277.1 26.6 375 45-578 2-408 (421)
40 PRK07627 dihydroorotase; Provi 100.0 8.3E-31 1.8E-35 274.4 26.9 366 45-579 1-423 (425)
41 TIGR02033 D-hydantoinase D-hyd 100.0 6.3E-30 1.4E-34 273.3 33.8 210 363-578 160-437 (454)
42 cd01314 D-HYD D-hydantoinases 100.0 9E-30 1.9E-34 271.2 33.2 208 363-578 159-435 (447)
43 PRK13206 ureC urease subunit a 100.0 4.4E-30 9.6E-35 268.0 29.1 346 43-579 69-462 (573)
44 PRK13207 ureC urease subunit a 100.0 5E-30 1.1E-34 268.5 29.6 346 42-578 64-456 (568)
45 PRK09357 pyrC dihydroorotase; 100.0 9.9E-30 2.1E-34 268.7 31.7 211 363-579 156-422 (423)
46 KOG3968 Atrazine chlorohydrola 100.0 9.1E-31 2E-35 256.0 20.5 200 363-579 217-438 (439)
47 PRK08323 phenylhydantoinase; V 100.0 4.2E-29 9E-34 267.1 33.6 210 363-578 157-435 (459)
48 cd01299 Met_dep_hydrolase_A Me 100.0 1.9E-29 4E-34 259.7 27.8 195 330-561 135-341 (342)
49 PRK06189 allantoinase; Provisi 100.0 1.6E-28 3.5E-33 260.6 34.1 364 44-578 2-431 (451)
50 PRK12394 putative metallo-depe 100.0 6.4E-29 1.4E-33 258.1 29.8 181 363-579 170-375 (379)
51 PRK13985 ureB urease subunit b 100.0 7.7E-29 1.7E-33 256.3 29.8 349 43-579 63-457 (568)
52 PRK15446 phosphonate metabolis 100.0 5.5E-29 1.2E-33 257.5 28.0 356 44-579 1-381 (383)
53 TIGR03178 allantoinase allanto 100.0 3.7E-28 8E-33 257.6 33.7 361 46-578 1-428 (443)
54 TIGR01792 urease_alph urease, 100.0 8.9E-29 1.9E-33 259.6 27.7 347 41-578 62-455 (567)
55 cd01315 L-HYD_ALN L-Hydantoina 100.0 4E-28 8.6E-33 258.5 33.2 363 46-578 1-432 (447)
56 PRK13404 dihydropyrimidinase; 100.0 8.6E-29 1.9E-33 263.4 27.8 373 45-578 4-444 (477)
57 cd01297 D-aminoacylase D-amino 100.0 1.6E-28 3.6E-33 258.0 28.7 188 363-578 196-403 (415)
58 COG0044 PyrC Dihydroorotase an 100.0 1.2E-28 2.6E-33 254.6 25.4 368 45-578 1-420 (430)
59 PLN02795 allantoinase 100.0 2.4E-27 5.1E-32 253.3 35.6 375 44-578 43-488 (505)
60 cd00375 Urease_alpha Urease al 100.0 1.2E-27 2.6E-32 248.5 32.1 341 42-579 62-457 (567)
61 PRK13308 ureC urease subunit a 100.0 8.6E-28 1.9E-32 249.7 29.3 333 43-578 66-457 (569)
62 PRK09059 dihydroorotase; Valid 100.0 2.6E-27 5.7E-32 248.4 32.3 367 45-579 3-428 (429)
63 PRK09236 dihydroorotase; Revie 100.0 3.5E-27 7.5E-32 249.9 32.5 157 410-578 229-426 (444)
64 PRK06846 putative deaminase; V 100.0 3.3E-27 7.2E-32 247.8 30.9 187 363-578 203-404 (410)
65 TIGR02318 phosphono_phnM phosp 100.0 1.8E-27 3.8E-32 245.4 28.2 168 364-578 207-376 (376)
66 PLN02303 urease 100.0 3.5E-27 7.6E-32 252.6 29.9 196 363-579 494-726 (837)
67 PRK08044 allantoinase; Provisi 100.0 1.9E-26 4.1E-31 243.8 35.1 365 45-578 3-433 (449)
68 PRK07575 dihydroorotase; Provi 100.0 8E-27 1.7E-31 246.3 32.1 358 44-578 2-420 (438)
69 PRK09060 dihydroorotase; Valid 100.0 1.5E-26 3.2E-31 244.5 33.6 361 44-578 4-422 (444)
70 TIGR01975 isoAsp_dipep isoaspa 100.0 6.2E-27 1.4E-31 240.8 28.2 177 363-578 168-377 (389)
71 PRK02382 dihydroorotase; Provi 100.0 6.6E-26 1.4E-30 240.1 34.7 356 45-579 2-419 (443)
72 PRK07369 dihydroorotase; Provi 100.0 2.2E-26 4.8E-31 240.3 28.3 333 45-554 2-385 (418)
73 cd01309 Met_dep_hydrolase_C Me 100.0 7.8E-27 1.7E-31 240.2 23.6 177 367-578 181-359 (359)
74 PRK08417 dihydroorotase; Provi 100.0 5.9E-27 1.3E-31 243.2 22.2 211 363-579 127-386 (386)
75 PRK10657 isoaspartyl dipeptida 100.0 8.1E-26 1.8E-30 236.5 30.2 179 363-578 168-376 (388)
76 PRK09237 dihydroorotase; Provi 100.0 3.3E-26 7.1E-31 238.4 26.7 175 369-579 171-369 (380)
77 PRK09061 D-glutamate deacylase 99.9 3.7E-25 8E-30 236.7 30.9 214 363-578 196-489 (509)
78 COG1001 AdeC Adenine deaminase 99.9 1.1E-25 2.4E-30 231.1 24.4 322 42-578 21-358 (584)
79 TIGR01178 ade adenine deaminas 99.9 1.1E-24 2.3E-29 233.3 31.6 312 46-578 1-331 (552)
80 TIGR00857 pyrC_multi dihydroor 99.9 1.3E-24 2.8E-29 228.0 31.8 216 363-579 144-410 (411)
81 PRK01211 dihydroorotase; Provi 99.9 1.9E-24 4.1E-29 224.2 24.0 158 412-578 209-389 (409)
82 PRK10027 cryptic adenine deami 99.9 2E-23 4.4E-28 223.3 29.7 164 363-578 195-365 (588)
83 cd01304 FMDH_A Formylmethanofu 99.9 6.2E-23 1.3E-27 213.3 31.2 110 468-578 367-496 (541)
84 PRK04250 dihydroorotase; Provi 99.9 1.6E-23 3.4E-28 217.5 26.9 158 410-578 197-384 (398)
85 KOG2584 Dihydroorotase and rel 99.9 1.7E-25 3.6E-30 218.0 9.8 413 45-578 14-453 (522)
86 TIGR03121 one_C_dehyd_A formyl 99.9 1.3E-22 2.8E-27 212.0 32.1 109 469-578 371-498 (556)
87 PRK00369 pyrC dihydroorotase; 99.9 3.9E-23 8.4E-28 213.2 27.1 272 248-578 66-372 (392)
88 COG1820 NagA N-acetylglucosami 99.9 3.9E-24 8.5E-29 211.2 17.3 71 487-579 310-380 (380)
89 COG3964 Predicted amidohydrola 99.9 2E-23 4.4E-28 194.8 18.3 307 45-554 4-339 (386)
90 cd01308 Isoaspartyl-dipeptidas 99.9 5.8E-22 1.2E-26 207.3 28.6 64 47-114 2-65 (387)
91 cd00854 NagA N-acetylglucosami 99.9 6.3E-23 1.4E-27 212.4 19.9 173 369-574 175-374 (374)
92 PRK11170 nagA N-acetylglucosam 99.9 2E-21 4.4E-26 200.0 28.2 58 511-578 323-380 (382)
93 TIGR00221 nagA N-acetylglucosa 99.9 3.9E-22 8.5E-27 204.7 21.2 67 487-575 314-380 (380)
94 COG3454 Metal-dependent hydrol 99.9 5.5E-22 1.2E-26 187.5 18.7 96 462-578 282-377 (377)
95 TIGR03583 EF_0837 probable ami 99.9 1E-20 2.2E-25 196.0 28.7 172 365-577 165-364 (365)
96 COG0804 UreC Urea amidohydrola 99.9 3E-21 6.6E-26 186.6 21.3 346 42-578 64-456 (568)
97 cd01307 Met_dep_hydrolase_B Me 99.9 6.5E-21 1.4E-25 195.3 23.4 149 367-555 150-317 (338)
98 cd01295 AdeC Adenine deaminase 99.9 7.8E-21 1.7E-25 200.0 23.4 169 364-578 119-290 (422)
99 cd01318 DHOase_IIb Dihydroorot 99.9 2.9E-21 6.3E-26 198.3 18.6 289 248-574 25-361 (361)
100 cd01317 DHOase_IIa Dihydroorot 99.9 8.4E-20 1.8E-24 189.5 24.4 180 363-555 117-344 (374)
101 cd01302 Cyclic_amidohydrolases 99.8 7.5E-19 1.6E-23 179.4 22.4 259 247-555 24-307 (337)
102 PF01979 Amidohydro_1: Amidohy 99.8 5.3E-19 1.2E-23 181.3 18.3 165 363-552 141-333 (333)
103 cd01305 archeal_chlorohydrolas 99.8 8.8E-19 1.9E-23 173.1 17.4 136 368-530 127-263 (263)
104 PRK06886 hypothetical protein; 99.8 4.9E-17 1.1E-21 163.0 25.2 267 223-534 46-328 (329)
105 cd01306 PhnM PhnM is believed 99.8 1.6E-17 3.5E-22 166.0 21.2 165 363-574 160-325 (325)
106 COG1229 FwdA Formylmethanofura 99.8 3E-17 6.4E-22 159.4 20.5 107 471-577 381-508 (575)
107 COG3653 N-acyl-D-aspartate/D-g 99.7 1.4E-15 3.1E-20 148.9 26.9 65 44-114 5-72 (579)
108 PF13147 Amidohydro_4: Amidohy 99.6 2.8E-15 6.1E-20 150.7 16.0 77 461-549 224-304 (304)
109 cd01316 CAD_DHOase The eukaryo 99.6 7.4E-14 1.6E-18 142.0 25.8 182 374-578 120-332 (344)
110 KOG3892 N-acetyl-glucosamine-6 99.5 2.3E-14 4.9E-19 132.4 10.1 60 510-579 345-404 (407)
111 cd01292 metallo-dependent_hydr 99.5 1.1E-12 2.4E-17 130.0 20.7 234 239-530 27-275 (275)
112 cd01294 DHOase Dihydroorotase 99.5 2.7E-12 5.8E-17 131.4 23.8 171 364-544 111-308 (335)
113 PF13594 Amidohydro_5: Amidohy 99.3 3.1E-12 6.8E-17 97.9 5.1 44 67-113 1-44 (68)
114 cd01320 ADA Adenosine deaminas 99.3 3.9E-10 8.5E-15 115.1 21.3 142 363-534 170-314 (325)
115 TIGR01430 aden_deam adenosine 99.2 2.3E-09 4.9E-14 109.3 21.3 143 363-535 169-314 (324)
116 PRK05451 dihydroorotase; Provi 99.2 4.2E-09 9E-14 107.9 22.6 170 364-543 116-313 (345)
117 TIGR00856 pyrC_dimer dihydroor 99.2 4.9E-09 1.1E-13 106.8 21.5 175 364-557 113-315 (341)
118 PRK09358 adenosine deaminase; 99.1 3.7E-09 8.1E-14 108.5 18.2 142 363-534 179-323 (340)
119 PLN02599 dihydroorotase 99.0 3.7E-08 8E-13 100.6 22.2 169 364-540 134-329 (364)
120 cd00443 ADA_AMPD Adenosine/AMP 98.6 5.5E-06 1.2E-10 83.4 20.6 140 364-534 151-294 (305)
121 TIGR00010 hydrolase, TatD fami 98.5 1.2E-05 2.5E-10 78.9 19.9 134 365-533 107-252 (252)
122 cd01310 TatD_DNAse TatD like p 98.5 2E-05 4.3E-10 77.2 21.1 133 365-532 107-251 (251)
123 PTZ00124 adenosine deaminase; 98.5 1.1E-05 2.3E-10 82.6 19.0 138 367-534 207-350 (362)
124 PRK10812 putative DNAse; Provi 98.3 4.4E-05 9.6E-10 75.0 18.7 137 365-535 110-258 (265)
125 cd01321 ADGF Adenosine deamina 98.3 0.00011 2.5E-09 74.9 20.7 143 364-534 177-330 (345)
126 cd00530 PTE Phosphotriesterase 98.2 8.7E-05 1.9E-09 74.6 17.1 148 364-531 134-293 (293)
127 PRK11449 putative deoxyribonuc 98.1 0.00032 6.9E-09 68.7 19.0 137 365-533 113-258 (258)
128 PF00962 A_deaminase: Adenosin 98.0 0.00011 2.4E-09 75.1 14.8 237 241-534 72-321 (331)
129 COG1816 Add Adenosine deaminas 98.0 7.7E-05 1.7E-09 74.8 12.6 142 363-534 182-326 (345)
130 PRK10425 DNase TatD; Provision 98.0 0.0011 2.4E-08 64.8 20.2 138 366-533 108-258 (258)
131 COG0084 TatD Mg-dependent DNas 97.9 0.00057 1.2E-08 66.2 15.9 136 366-533 112-256 (256)
132 PRK09875 putative hydrolase; P 97.8 0.0011 2.3E-08 65.8 16.1 146 364-532 137-292 (292)
133 TIGR01431 adm_rel adenosine de 97.6 0.0078 1.7E-07 64.1 21.5 143 365-535 305-457 (479)
134 COG1099 Predicted metal-depend 97.6 0.0065 1.4E-07 56.0 17.4 136 365-534 113-254 (254)
135 PF01026 TatD_DNase: TatD rela 97.5 0.01 2.2E-07 58.2 19.3 133 366-532 111-255 (255)
136 KOG1097 Adenine deaminase/aden 97.2 0.0036 7.9E-08 63.2 11.8 142 365-534 226-372 (399)
137 COG0418 PyrC Dihydroorotase [N 97.1 0.21 4.5E-06 48.6 21.3 192 364-577 116-339 (344)
138 cd01311 PDC_hydrolase 2-pyrone 97.0 0.2 4.4E-06 49.3 21.8 107 364-486 108-225 (263)
139 PF02126 PTE: Phosphotriestera 97.0 0.016 3.5E-07 58.0 13.8 247 245-531 36-307 (308)
140 COG1735 Php Predicted metal-de 95.9 0.74 1.6E-05 45.1 17.0 154 364-533 150-314 (316)
141 TIGR01429 AMP_deaminase AMP de 94.9 0.27 5.8E-06 53.4 11.9 136 366-535 422-566 (611)
142 PF00449 Urease_alpha: Urease 94.6 0.062 1.3E-06 44.1 4.6 38 43-82 64-101 (121)
143 cd01319 AMPD AMP deaminase (AM 94.2 0.28 6.1E-06 52.1 9.9 121 381-535 328-454 (496)
144 PLN03055 AMP deaminase; Provis 94.1 0.25 5.3E-06 53.4 9.2 127 375-535 409-544 (602)
145 COG3618 Predicted metal-depend 93.9 6.9 0.00015 38.2 19.8 141 365-533 123-278 (279)
146 PRK06361 hypothetical protein; 93.2 0.43 9.3E-06 45.2 8.5 97 412-533 114-210 (212)
147 PLN02768 AMP deaminase 92.8 0.57 1.2E-05 52.0 9.4 121 381-535 651-777 (835)
148 PRK08392 hypothetical protein; 92.0 3.9 8.5E-05 38.8 13.3 44 424-483 141-184 (215)
149 PTZ00310 AMP deaminase; Provis 91.9 0.78 1.7E-05 54.1 9.7 126 376-535 1103-1237(1453)
150 PF12890 DHOase: Dihydro-orota 91.4 0.064 1.4E-06 45.5 0.3 20 98-117 1-20 (142)
151 KOG2902 Dihydroorotase [Nucleo 91.3 10 0.00022 35.9 14.4 82 366-449 117-207 (344)
152 PTZ00310 AMP deaminase; Provis 90.7 1.1 2.5E-05 52.9 9.5 135 368-535 465-608 (1453)
153 COG2159 Predicted metal-depend 90.2 4.1 8.9E-05 40.7 11.9 140 364-535 142-292 (293)
154 PF04909 Amidohydro_2: Amidohy 86.6 1.6 3.6E-05 42.6 6.5 142 369-533 120-273 (273)
155 PRK06740 histidinol-phosphatas 85.4 35 0.00076 34.7 15.5 51 424-482 243-293 (331)
156 PRK00912 ribonuclease P protei 81.4 28 0.00061 33.5 12.4 116 412-544 104-228 (237)
157 KOG3020 TatD-related DNase [Re 80.8 36 0.00078 33.8 12.8 71 368-444 137-207 (296)
158 COG4464 CapC Capsular polysacc 78.6 59 0.0013 30.5 15.1 53 250-302 23-77 (254)
159 KOG2584 Dihydroorotase and rel 78.4 90 0.0019 32.5 16.8 107 248-387 87-199 (522)
160 COG2355 Zn-dependent dipeptida 69.8 40 0.00088 33.7 10.0 134 368-531 151-307 (313)
161 cd01301 rDP_like renal dipepti 66.9 54 0.0012 33.0 10.5 102 366-483 154-266 (309)
162 COG0502 BioB Biotin synthase a 65.6 38 0.00083 34.2 8.9 112 361-479 82-198 (335)
163 COG1831 Predicted metal-depend 59.9 1.7E+02 0.0037 28.5 11.6 132 364-534 143-283 (285)
164 PF01244 Peptidase_M19: Membra 59.3 37 0.0008 34.4 7.8 143 368-531 162-318 (320)
165 PF07908 D-aminoacyl_C: D-amin 47.3 18 0.00038 25.1 2.3 15 564-578 17-31 (48)
166 PRK07114 keto-hydroxyglutarate 47.1 2.6E+02 0.0057 26.6 12.3 94 363-480 24-119 (222)
167 COG5016 Pyruvate/oxaloacetate 46.8 2.2E+02 0.0047 29.6 10.6 22 248-269 99-120 (472)
168 TIGR01182 eda Entner-Doudoroff 46.1 2.6E+02 0.0056 26.2 12.2 92 363-480 17-108 (204)
169 PRK06015 keto-hydroxyglutarate 45.4 2.6E+02 0.0057 26.1 12.0 92 363-480 13-104 (201)
170 cd01733 LSm10 The eukaryotic S 45.3 37 0.00081 26.3 4.1 37 42-78 40-76 (78)
171 TIGR00433 bioB biotin syntheta 42.2 2.9E+02 0.0063 27.3 11.2 109 363-477 62-175 (296)
172 cd01317 DHOase_IIa Dihydroorot 42.2 71 0.0015 33.1 7.0 42 91-142 2-43 (374)
173 cd01721 Sm_D3 The eukaryotic S 39.6 50 0.0011 24.9 3.9 36 43-78 32-67 (70)
174 PRK14042 pyruvate carboxylase 39.2 5.8E+02 0.013 28.4 13.6 108 248-389 97-207 (596)
175 TIGR01496 DHPS dihydropteroate 38.0 3.9E+02 0.0085 26.0 11.0 63 367-441 62-126 (257)
176 PRK06552 keto-hydroxyglutarate 35.1 3.9E+02 0.0085 25.2 10.1 79 363-445 22-100 (213)
177 PRK07945 hypothetical protein; 34.8 74 0.0016 32.5 5.5 77 423-526 248-326 (335)
178 PRK06256 biotin synthase; Vali 34.7 3.8E+02 0.0082 27.1 10.8 108 363-477 91-204 (336)
179 COG1603 RPP1 RNase P/RNase MRP 34.4 4.2E+02 0.0091 25.3 12.3 140 364-532 62-210 (229)
180 PRK07328 histidinol-phosphatas 33.4 78 0.0017 31.1 5.3 52 423-483 180-231 (269)
181 cd01724 Sm_D1 The eukaryotic S 31.5 86 0.0019 25.1 4.2 37 42-78 32-68 (90)
182 COG0800 Eda 2-keto-3-deoxy-6-p 30.9 4.2E+02 0.0091 25.0 9.2 91 363-480 22-113 (211)
183 PRK05301 pyrroloquinoline quin 29.0 3.9E+02 0.0086 27.5 10.0 112 363-480 46-161 (378)
184 COG1856 Uncharacterized homolo 28.7 5.2E+02 0.011 24.6 10.4 155 364-525 40-213 (275)
185 PLN02417 dihydrodipicolinate s 28.7 5.8E+02 0.012 25.1 16.6 69 247-317 22-90 (280)
186 PLN02389 biotin synthase 28.0 6.8E+02 0.015 26.0 11.3 110 362-479 115-232 (379)
187 PRK05718 keto-hydroxyglutarate 27.5 3.9E+02 0.0086 25.2 8.6 80 363-450 24-104 (212)
188 PF10055 DUF2292: Uncharacteri 27.2 78 0.0017 20.8 2.6 17 65-81 18-34 (38)
189 PRK12330 oxaloacetate decarbox 26.9 8.4E+02 0.018 26.4 13.4 108 248-389 98-210 (499)
190 cd01723 LSm4 The eukaryotic Sm 26.8 1.1E+02 0.0024 23.5 4.0 37 42-78 32-69 (76)
191 cd01731 archaeal_Sm1 The archa 26.6 1.3E+02 0.0027 22.5 4.2 37 43-79 32-68 (68)
192 PRK09613 thiH thiamine biosynt 26.1 8.4E+02 0.018 26.2 12.4 116 362-480 114-240 (469)
193 TIGR02109 PQQ_syn_pqqE coenzym 25.7 4.9E+02 0.011 26.5 9.9 112 363-480 37-152 (358)
194 PRK15108 biotin synthase; Prov 24.5 7.7E+02 0.017 25.2 11.0 107 363-478 76-189 (345)
195 PF15581 Imm35: Immunity prote 23.8 1.9E+02 0.0042 22.8 4.6 49 512-578 44-92 (93)
196 cd01726 LSm6 The eukaryotic Sm 23.8 1.4E+02 0.003 22.2 4.0 35 43-77 32-66 (67)
197 PRK08609 hypothetical protein; 23.6 4.8E+02 0.01 28.9 9.7 76 424-524 483-558 (570)
198 TIGR01856 hisJ_fam histidinol 22.8 80 0.0017 30.7 3.2 51 423-482 188-238 (253)
199 PRK09140 2-dehydro-3-deoxy-6-p 22.6 6.4E+02 0.014 23.6 9.7 75 363-444 19-94 (206)
200 cd01722 Sm_F The eukaryotic Sm 22.5 1.5E+02 0.0033 22.1 4.0 35 43-77 33-67 (68)
201 PRK09240 thiH thiamine biosynt 22.4 8.7E+02 0.019 25.1 11.1 108 361-475 102-217 (371)
202 PRK13404 dihydropyrimidinase; 22.3 4.7E+02 0.01 28.1 9.3 32 363-394 218-250 (477)
203 COG1387 HIS2 Histidinol phosph 22.3 2.1E+02 0.0045 27.5 5.9 47 423-485 150-198 (237)
204 PF03102 NeuB: NeuB family; I 22.3 5.1E+02 0.011 25.0 8.5 70 363-442 53-122 (241)
205 PF01081 Aldolase: KDPG and KH 22.2 4.9E+02 0.011 24.2 8.0 75 363-444 17-91 (196)
206 TIGR03569 NeuB_NnaB N-acetylne 21.5 3.1E+02 0.0067 27.9 7.1 70 363-442 73-142 (329)
207 PF07287 DUF1446: Protein of u 21.0 4.8E+02 0.01 26.9 8.4 110 365-479 57-166 (362)
208 smart00651 Sm snRNP Sm protein 21.0 1.3E+02 0.0029 22.0 3.4 36 43-78 30-66 (67)
209 PRK05835 fructose-bisphosphate 20.2 7.3E+02 0.016 24.9 9.3 79 363-444 25-108 (307)
No 1
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=9.3e-72 Score=583.20 Aligned_cols=526 Identities=37% Similarity=0.584 Sum_probs=473.2
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
.++++++||+|++++...+....|.|+||||++||..++.....+++.++||++|++|+|||||+|.|+..++.......
T Consensus 4 ~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~~ 83 (535)
T COG1574 4 AADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELN 83 (535)
T ss_pred ccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhccc
Confidence 46799999999999887778889999999999999999988877788999999999999999999999999998776778
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEE--eCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILG--GGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGI 201 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g--~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~ 201 (579)
+.++.+.+++.+.++...+..+.++|+.+ ++|..+.|.+..|+..++|++.+++|+++.+.++|..++|+++|+.+||
T Consensus 84 ~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~Gi 163 (535)
T COG1574 84 LDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAGI 163 (535)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcCC
Confidence 88999999999999999988888876665 5556666778899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHH-HHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLR-ASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
+..+++|.||.+.++.+|.++|++.|.+...+...+|..++++..+.... +++.+.+.|+|++.+++. + ...
T Consensus 164 ~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~------~~~ 236 (535)
T COG1574 164 TRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y------QGY 236 (535)
T ss_pred CCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c------ccc
Confidence 99999999998889999999999999999999999998877777777766 899999999999999874 1 233
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGL 360 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~ 360 (579)
......++.+...+.+++++........... .............+++.+++|++.||+++++++.+.+||.+.++..|.
T Consensus 237 ~~~~~~~r~~~~~~~l~~rv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~ 315 (535)
T COG1574 237 YADYEAYRALAAGGELPVRVALLLFTEDLKE-ERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGE 315 (535)
T ss_pred hhHHHHHHHHHhcCcceEEEEeeccccchhh-HHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCCC
Confidence 4666888899999999999998776655443 111112223356678888999999999999999999999999987789
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecc
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p 440 (579)
+.++++.+.++++.+.++|+++.+|+.||.+++.+++++++....++..+.++.++|++++++++++++++.|+.++++|
T Consensus 316 ~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP 395 (535)
T COG1574 316 LLLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQP 395 (535)
T ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeecc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
.+..++.+++.+++|.+|. +..+|++.|+++|+++++|||+|..+.+||..++.++.|....+.... .+..||.+|||
T Consensus 396 ~f~~~~~~~~~~rlG~~r~-~~~~p~~~ll~~G~~la~gSD~Pv~~~dP~~~i~~AVtr~~~~g~~~~-~~~~L~~~eAL 473 (535)
T COG1574 396 NFLFSDGEWYVDRLGEERA-SRSYPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAVTRKTPGGRVLG-PEERLTREEAL 473 (535)
T ss_pred ccccccchHHHHhhhhhhh-hccCcHHHHHHCCCeEeccCCCCCCCCChHHHHHHHHcCCCCCCCCCc-cccccCHHHHH
Confidence 9999888999999999999 999999999999999999999999999999999999998876542221 22279999999
Q ss_pred HHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeCC
Q 008063 521 IAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 521 ~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+++|.++|.+.|.++++|+|++||.|||+|+|.|+|+ ++..++..+|+.||++||+||.
T Consensus 474 ~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~i~~~~v~~T~~~Gk~VY~ 533 (535)
T COG1574 474 RAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDTKVVLTIVAGKVVYR 533 (535)
T ss_pred HHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHHhccceEEEEEEcCeEeec
Confidence 9999999999999999999999999999999999999 8888999999999999999985
No 2
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=100.00 E-value=1.4e-60 Score=511.86 Aligned_cols=475 Identities=44% Similarity=0.680 Sum_probs=413.1
Q ss_pred EEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCCCCCHHHHHHHHHHHHHcCC
Q 008063 66 SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSK 145 (579)
Q Consensus 66 ~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 145 (579)
.|.|+||||++||+..+.....+++.+++|++|++|+|||||+|+|+..++.....+++.++.+.+++...+++..+..+
T Consensus 1 a~~v~~g~i~~vg~~~~~~~~~~~~~~~~d~~~~~~~PGfiD~H~H~~~~~~~~~~~~l~~~~s~~e~~~~l~~~~~~~~ 80 (479)
T cd01300 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLSGVTSKEEALARIREDAAAAP 80 (479)
T ss_pred CeEEECCEEEEECCHHHHHhhcCCCcEEEECCCCEEccCcccccccchhhcccceeecCCCCCCHHHHHHHHHHHHHhCC
Confidence 37899999999998777655445678999999999999999999999988887778889999999999999999888888
Q ss_pred CCCeEEEeCCCCCCCC-CCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEE
Q 008063 146 KGSWILGGGWNNDLWG-GDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGL 224 (579)
Q Consensus 146 ~~~~~~g~~~~~~~~~-~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~ 224 (579)
.++||+|.||.+..|. +..|+++.||++++++|+++.+.++|..++|+++|+.+||+..++.|.|+.+.++++|+++|+
T Consensus 81 ~~~wi~~~g~~~~~~~~~~~p~~~~LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~~~~~~~~~g~~~~~~~g~~tG~ 160 (479)
T cd01300 81 PGEWILGFGWDESLLGEGRYPTRAELDAVSPDRPVLLLRRDGHSAWVNSAALRLAGITRDTPDPPGGEIVRDADGEPTGV 160 (479)
T ss_pred CCCeEEECCcCHHHcCCCCCCCHHHHhcccCCCcEEEEccCchHHHHHHHHHHHcCCCCCCCCCCCCEEeeCCCCCccEE
Confidence 8999999999999995 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEcc
Q 008063 225 LIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFF 304 (579)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~ 304 (579)
+.|.+...+...++..+.++..+.++...+.+++.|+|++.+.+.. .......++.+.+++.+++|+....
T Consensus 161 l~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiT~v~d~~~~---------~~~~~~~~~~l~~~~~l~~rv~~~~ 231 (479)
T cd01300 161 LVEAAAALVLEAVPPPTPEERRAALRAAARELASLGVTTVHDAGGG---------AADDIEAYRRLAAAGELTLRVRVAL 231 (479)
T ss_pred EeHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCC---------hhhHHHHHHHHHHCCCCeEEEEEEe
Confidence 9999888888888888999999999999999999999999997532 1123567888888887888876543
Q ss_pred Cccchh--hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeE
Q 008063 305 PLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQV 382 (579)
Q Consensus 305 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i 382 (579)
...... ...+..........++++.+++|++.||+++++++++.+||.+.++..|...++++.+.++++.|++.|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vKl~~DG~~~~~ta~l~~pY~~~~~~~g~~~~~~e~l~~~~~~a~~~g~~v 311 (479)
T cd01300 232 YVSPLAEDLLEELGARKNGAGDDRLRLGGVKLFADGSLGSRTAALSEPYLDSPGTGGLLLISPEELEELVRAADEAGLQV 311 (479)
T ss_pred ccccchhhhhhHHhhhccCCCCCcEEEeeEEEEEcCCCCcccccccCCcCCCCCCCCCccCCHHHHHHHHHHHHHCCCCE
Confidence 322211 111111112233567899999999999999999999999999988888888999999999999999999999
Q ss_pred EEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHh-hChhhhhh
Q 008063 383 AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKK-LGVDRAER 461 (579)
Q Consensus 383 ~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~-l~~~~~~~ 461 (579)
.+|+.|+.+++..++.+++.....|..+.++.+.|+..+++++++++++.|+.+++||.+...+.+..... +++.+. +
T Consensus 312 ~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~~~~~~~~~~~~~~lg~~~~-~ 390 (479)
T cd01300 312 AIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNHLYSDGDAAEDRRLGEERA-K 390 (479)
T ss_pred EEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCcccccCchHHHHHhcccHHHH-h
Confidence 99999999999999999998888887788999999999999999999999999999999987776655544 777777 8
Q ss_pred hhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 462 ESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 462 ~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
..+|++.+++.|+++++|||++..+.+++..++.++.+........+..+.+++++++|+++|.|||+.+|+++++|+|+
T Consensus 391 ~~~p~~~~~~~Gv~v~lGSD~~~~~~~p~~~~~~av~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe 470 (479)
T cd01300 391 RSYPFRSLLDAGVPVALGSDAPVAPPDPLLGIWAAVTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLE 470 (479)
T ss_pred cCchHHHHHHCCCeeeccCCCCCCCCCHHHHHHHHheeeCCCCCCCCCccccCCHHHHHHHHHHHHHHHhcccccccccc
Confidence 88999999999999999999988889999999999987654332222356789999999999999999999999899999
Q ss_pred CCCcccEEE
Q 008063 542 PGKIADFVI 550 (579)
Q Consensus 542 ~G~~ADlvv 550 (579)
+||.|||||
T Consensus 471 ~Gk~ADlvv 479 (479)
T cd01300 471 PGKLADFVV 479 (479)
T ss_pred CCcccceeC
Confidence 999999986
No 3
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=100.00 E-value=4.5e-41 Score=354.15 Aligned_cols=389 Identities=42% Similarity=0.612 Sum_probs=318.4
Q ss_pred eeecccccccccccccCccc-cccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCC-CCCC-ChHHh--hhhC
Q 008063 100 VVVPGFIDSHVHFIPGGLQM-ARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWG-GDLP-MASWI--DDIT 174 (579)
Q Consensus 100 ~V~PG~ID~H~H~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~~~p-~~~~l--d~~~ 174 (579)
+|+|||||+|+|+...+... ..++..+..+..++.+.++.+..+ .|.||....|. +++| +++.| |.+.
T Consensus 1 ~v~PGfiD~H~H~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~-------~~~g~~~~~~~~~~~~~~~~~L~~D~~~ 73 (404)
T PF07969_consen 1 TVMPGFIDSHTHLDSAGLWDPRSVDLSGQGSIDEILCGIRAAAAK-------VGFGWDESLFPEGRLPPTREELPWDEAS 73 (404)
T ss_dssp EEEE-EEEEEEEHTTHHHHHTCSECHCTTTCCCCHHCCHHT-SSS-------EEEEEHHHHHCCSSTCTCHHHHHCTTSS
T ss_pred CCccChhHHhhChHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHh-------ccCCCCHHHhhcccccCCHHHhhhhhHh
Confidence 68999999999998766554 567778888888888888877553 88999988884 6777 99999 9999
Q ss_pred CCCeEEEEeCCCchhhhcHHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCC--CCHHHHHHHHHHH
Q 008063 175 PHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPE--VSVDERREALLRA 252 (579)
Q Consensus 175 ~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 252 (579)
+++|+++.+.++|..++|+++++. .+|.++|++.+.+.......++. .+.++.++.++..
T Consensus 74 ~~~Pv~~~~~~~h~~~~Ns~al~~------------------~~g~~~G~l~e~a~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (404)
T PF07969_consen 74 PDRPVFIRRFDGHSAWLNSAALEL------------------ADGEPTGILREAAMVLGWRAIPATAAELEEMREALREA 135 (404)
T ss_dssp SSSHEEEEECCCSEEEECHHHHHH------------------TEETTCCEEEHHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCcChHHHHhHHHhhc------------------cccCCceeeehhhhhhHHhhCccccCCHHHHHHHHHHH
Confidence 999999999999999999999998 56789999999988666666666 5678888888888
Q ss_pred HHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceE
Q 008063 253 SNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGV 332 (579)
Q Consensus 253 ~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 332 (579)
...+.+.|+|++.++... ....+.....++.+.....+++++..+. +.+++
T Consensus 136 ~~~~~a~GiTt~~d~~~~------~~~~~~~~~~~~~l~~~~~l~~rv~~~~-----------------------~~~~v 186 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYGGG------FASDPEDLEALRELAAEGGLPLRVHLYP-----------------------RIGGV 186 (404)
T ss_dssp HHHHCHTCEEEETTCECC------CGEHHHHHHHHHHHHHCTC--SEEEEEE-----------------------EEEEE
T ss_pred HHHhcCCCeEEecCCccc------cCCCHHHHHHHHHHhhhcCCCeeeeeec-----------------------ccCce
Confidence 999999999999998621 1245677888888999999999988653 56889
Q ss_pred EEEEcCccCCCcccccCC-CCCCC----CCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcC
Q 008063 333 KAFADGSLGSNSALFHEP-YADEP----HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTG 407 (579)
Q Consensus 333 k~~~dg~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~ 407 (579)
|.+.||......+.+..| +.+.. ++.+....+++.+.++++.+.+.|+++.+|+.|+.+++.+++++++....
T Consensus 187 k~~~dg~~~~~~a~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~-- 264 (404)
T PF07969_consen 187 KIFADGSPGGRTALLEEPYYADEPGAPVHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR-- 264 (404)
T ss_dssp EEESSSSTTHHHHHHHHHHHHHHHTSEEEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC--
T ss_pred eeccccccccchhhhccccccCcccccccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc--
Confidence 999999988777777776 44433 34566778888899999999999999999999999999999999887443
Q ss_pred CCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccch-hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 408 KRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDA-DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 408 ~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
..+.|+...++++++++++.++..+++|.+...+. ......+++++. +...+++.+.++|+++++|||++..+
T Consensus 265 -----~~i~h~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Gv~v~~gsD~p~~~ 338 (404)
T PF07969_consen 265 -----GRIEHAELIDPDDIERMAELGVTASVQPHFLFSWGGEWYEERLGPERA-RRIYPIRSLLDAGVRVALGSDAPVSP 338 (404)
T ss_dssp -----HEEEEHCBCCHHHHHHHHHHTTEEEECCTHHHHETEETHHHHHHHHCG-GGBTHHHHHHHCTTEEEE--TTTTSS
T ss_pred -----ceeeccccCCHHHHHHHHHhCCccccChhHhhhccchhhhhhhhhHHH-HHHhHHHHHHhccCceecCcCCcccc
Confidence 28999999999999999999999999997666555 667778888887 88899999999999999999999989
Q ss_pred CCHHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEE
Q 008063 487 INPLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 550 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvv 550 (579)
.+++..++.++.+...... ..+.....+|++|||+++|+|||+.+|+++++|+|+|||.|||||
T Consensus 339 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 339 PNPFRGIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp CCHHHHHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred cCcchhhhhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 9999999988876543210 112223779999999999999999999999889999999999997
No 4
>PRK06687 chlorohydrolase; Validated
Probab=100.00 E-value=1.5e-37 Score=327.75 Aligned_cols=379 Identities=21% Similarity=0.286 Sum_probs=255.1
Q ss_pred EEEEcCeEEeCCCCC--CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~~--~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++|+|++|+++++.. ..+++|+|+||||++|++..+... ++..++||+.|++|+|||||+|+|+++....
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~--~~~~~viD~~g~~v~PGlIn~H~H~~~~~~r------ 73 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFL--EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLR------ 73 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccc--cccCeEEeCCCCEEccceeeeccCCCccccc------
Confidence 578999999987643 367899999999999998654321 2356899999999999999999999775431
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
|... ..+...|+....- |
T Consensus 74 -g~~~---------------------------------~~~~~~wl~~~~~--~-------------------------- 91 (419)
T PRK06687 74 -GIRD---------------------------------DSNLHEWLNDYIW--P-------------------------- 91 (419)
T ss_pred -cccC---------------------------------CCCHHHHHHhhhc--c--------------------------
Confidence 1110 1112233332100 0
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.....++++.+...+.++.+++++|+|++.++.+..+ . . ..
T Consensus 92 -------------------------------~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~-~----~---~~ 132 (419)
T PRK06687 92 -------------------------------AESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNG-V----D---IQ 132 (419)
T ss_pred -------------------------------ccccCCHHHHHHHHHHHHHHHHhcCcceeehhhcccc-c----c---HH
Confidence 0012344667778888999999999999999753111 0 1 12
Q ss_pred HHHHHHhhcCCCeeEEEEccCc-----cc----hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPL-----ET----WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 355 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~ 355 (579)
..++.+.+ .++|..+.... .. ..+..++++......... ++... ..+.+
T Consensus 133 ~~~~a~~~---~Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----i~~~~---------~~~~~----- 190 (419)
T PRK06687 133 QIYQVVKT---SKMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPN-----FKVMV---------APHSP----- 190 (419)
T ss_pred HHHHHHHH---hCCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCc-----eEEEE---------eCCCC-----
Confidence 33333332 24444432211 10 111222222110000111 22211 12222
Q ss_pred CCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHH----HHHhcCCCCCCceEeeccCCChhhHHHHh
Q 008063 356 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKS----VVVTTGKRDQRFRIEHAQHLASGTAARFG 430 (579)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~----~~~~~~~~~~~~~i~H~~~~~~~~~~~~~ 430 (579)
..++++.++++++.|+++|+++++|+.+.. +....++.+.. .....+..+.+..+.||.+++++++++++
T Consensus 191 -----~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la 265 (419)
T PRK06687 191 -----YSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLA 265 (419)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHH
Confidence 237899999999999999999999998764 44555544332 34556778889999999999999999999
Q ss_pred hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCC
Q 008063 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 431 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.|+.+++||.++. .++ ...+|++.++++|+++++|||+..+ +.+++.+++.+...... ..
T Consensus 266 ~~g~~v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~----~~ 328 (419)
T PRK06687 266 SSQVAIAHNPISNL--------KLA-----SGIAPIIQLQKAGVAVGIATDSVASNNNLDMFEEGRTAALLQKM----KS 328 (419)
T ss_pred HcCCeEEECcHHhh--------hhc-----cCCCcHHHHHHCCCeEEEeCCCCCCCCChhHHHHHHHHHHHhcc----cc
Confidence 99999999999875 233 4566899999999999999997533 46888888876432110 01
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CC--C----hhhc----cCCeEEEEEECCEEe
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WE--D----FAAE----VSASIEATYVSGVQA 577 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~--~----~~~~----~~~~v~~v~v~G~~v 577 (579)
.....++++++++|+|.+||+.+|+++++|+|++||.|||+++|.+. +. + +..+ ...+|..|||+||+|
T Consensus 329 ~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v 408 (419)
T PRK06687 329 GDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQENMLSHLVYAVKSSDVDDVYIAGEQV 408 (419)
T ss_pred CCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCccCHHHHhheeCCCCCccEEEECCEEE
Confidence 12345899999999999999999999889999999999999999752 21 2 1222 256899999999998
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
+
T Consensus 409 ~ 409 (419)
T PRK06687 409 V 409 (419)
T ss_pred E
Confidence 6
No 5
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1.8e-37 Score=329.04 Aligned_cols=387 Identities=23% Similarity=0.277 Sum_probs=254.3
Q ss_pred CCccEEEEcCeEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 43 LEADLVVTNGVIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++++|+|+.|++++. ....+++|+|+||||++|++..+.... +++.++||++|++|+|||||+|+|+++...
T Consensus 5 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~-~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~--- 80 (443)
T PRK09045 5 EPVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARAR-YAAAETVELPDHVLIPGLINAHTHAAMSLL--- 80 (443)
T ss_pred ccccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCccccccc-CCcceEEeCCCCEEecCEeccccChhhHhh---
Confidence 34689999999999863 234677999999999999986543211 245789999999999999999999865421
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
++... ..+...|+....
T Consensus 81 ----~g~~~---------------------------------~~~~~~w~~~~~-------------------------- 97 (443)
T PRK09045 81 ----RGLAD---------------------------------DLPLMTWLQDHI-------------------------- 97 (443)
T ss_pred ----hhccC---------------------------------CCCHHHHHHhhh--------------------------
Confidence 01000 011112221100
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
........++++.+.........++++|+|++.++..+
T Consensus 98 --------------------------------~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~---------- 135 (443)
T PRK09045 98 --------------------------------WPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF---------- 135 (443)
T ss_pred --------------------------------hhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----------
Confidence 00000123557778888889999999999999997421
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccc-----hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCC
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLET-----WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 355 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~ 355 (579)
.+ ...+... +.++|......... .....+...........+.....+++.. ....+
T Consensus 136 ~~--~~~~~~~---~~G~R~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~---------~~~~~----- 196 (443)
T PRK09045 136 PE--AAAEAAH---QAGMRAQIGMPVLDFPTAWASDADEYLAKGLELHDQWRHHPLISTAF---------APHAP----- 196 (443)
T ss_pred HH--HHHHHHH---HcCCeEEEecccccCCCccccCHHHHHHHHHHHHHHhcCCCcEEEEE---------eCCCC-----
Confidence 11 1122222 23345543221111 0111111110000000000001122211 11122
Q ss_pred CCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHh
Q 008063 356 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFG 430 (579)
Q Consensus 356 ~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~ 430 (579)
..++++.++++++.|+++|+++.+|+... .+....++.+ -+.....+..+.+..+.|+.+++++++++++
T Consensus 197 -----~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la 271 (443)
T PRK09045 197 -----YTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLA 271 (443)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHH
Confidence 23789999999999999999999999743 3344444432 1234556777889999999999999999999
Q ss_pred hCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCC
Q 008063 431 DQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 431 ~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.|+.+++||.++. .++ ....+++.+.+.|+++++|||++.+ ..+++.+++.+...... ..
T Consensus 272 ~~g~~i~~~P~~~~--------~~~-----~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~----~~ 334 (443)
T PRK09045 272 ETGCSVVHCPESNL--------KLA-----SGFCPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKA----VA 334 (443)
T ss_pred HcCCeEEECHHHHh--------hhc-----cCCCcHHHHHHCCCeEEEecCCCCCCCCccHHHHHHHHHHHHhh----cc
Confidence 99999999998754 122 4456899999999999999998753 36888888876421110 01
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Ch-----hhc----cCCeEEEEEECCEEeC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DF-----AAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~-----~~~----~~~~v~~v~v~G~~v~ 578 (579)
....+++++++|+++|.|||+.+|+++++|+|++||.|||||+|.++++ .+ .++ ...+|..||++|++||
T Consensus 335 ~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~~~~~~lv~~~~~~~v~~v~v~G~~v~ 414 (443)
T PRK09045 335 GDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVYDPVSQLVYAAGREQVSHVWVAGKQLL 414 (443)
T ss_pred CCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCccChHhHhhEeCCCCCccEEEECCEEEE
Confidence 1235699999999999999999999988999999999999999999764 11 222 2568999999999997
Q ss_pred C
Q 008063 579 P 579 (579)
Q Consensus 579 ~ 579 (579)
.
T Consensus 415 ~ 415 (443)
T PRK09045 415 D 415 (443)
T ss_pred E
Confidence 3
No 6
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=100.00 E-value=6e-37 Score=323.25 Aligned_cols=378 Identities=18% Similarity=0.239 Sum_probs=254.9
Q ss_pred ccEEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccc
Q 008063 45 ADLVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (579)
Q Consensus 45 ~~~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~ 122 (579)
|+++|+|++|++++.. ...+++|+|+||+|++|++...... +++.++||++|++|+|||||+|+|+++....
T Consensus 1 ~~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~--~~~~~viD~~g~~i~PGlVn~H~H~~~~~~r---- 74 (435)
T PRK15493 1 MKTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASD--FEVDEVIDMKGKWVLPGLVNTHTHVVMSLLR---- 74 (435)
T ss_pred CeEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCcccccc--CCCCeEEeCCCCEEccceeecccCccchhhh----
Confidence 5689999999997643 3467899999999999998532211 2457899999999999999999998765321
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhh-hCCCCeEEEEeCCCchhhhcHHHHHHcCC
Q 008063 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVGI 201 (579)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~-~~~~~p~~~~~~~~~~~~~n~~~~~~~g~ 201 (579)
|.. ++.+...|+.. +.|
T Consensus 75 ---g~~---------------------------------~~~~l~~wl~~~~~~-------------------------- 92 (435)
T PRK15493 75 ---GIG---------------------------------DDMLLQPWLETRIWP-------------------------- 92 (435)
T ss_pred ---ccC---------------------------------CCCCHHHHHHhchhh--------------------------
Confidence 110 01222333322 100
Q ss_pred CCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchH
Q 008063 202 TNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWE 281 (579)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~ 281 (579)
.....++++.+...+.+..+++++|+|++.|+....+ .
T Consensus 93 ----------------------------------~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~-~------- 130 (435)
T PRK15493 93 ----------------------------------LESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIG-V------- 130 (435)
T ss_pred ----------------------------------chhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccc-c-------
Confidence 0012456788888899999999999999999742110 0
Q ss_pred HHHHHHHHHhhcCCCeeEEEEccCccc------hh----hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 282 DFADVYQWASYSEKMKIRVCLFFPLET------WS----SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~v~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
....+.+.+. +.++|.+....... .. +...++..... ..+. ++.. ...+.|+
T Consensus 131 ~~~~~~~a~~---~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----i~~~---------~~~~~~~ 192 (435)
T PRK15493 131 DQDAIMETVS---RSGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYYN-ESGM-----LTTM---------VAPHSPY 192 (435)
T ss_pred CHHHHHHHHH---HcCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhcC-CCCC-----eEEE---------EeCCCCC
Confidence 0112222222 24566544221111 11 11111111000 0011 1111 1123333
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhH
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTA 426 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~ 426 (579)
.++++.++++.+.|+++|+++++|+.+. .+.+...+.+ .+.....|..+.+..+.||.+++++++
T Consensus 193 ----------t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~ 262 (435)
T PRK15493 193 ----------TCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNER 262 (435)
T ss_pred ----------cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHH
Confidence 3789999999999999999999999865 3333333332 234455678888999999999999999
Q ss_pred HHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCC
Q 008063 427 ARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGW 504 (579)
Q Consensus 427 ~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~ 504 (579)
+++++.|+.+++||.++. .++ ...+|++.+.++|+++++|||+..+ +.+++.+|+.++.....
T Consensus 263 ~~la~~g~~v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~-- 327 (435)
T PRK15493 263 AFLAEHDVRVAHNPNSNL--------KLG-----SGIANVKAMLEAGIKVGIATDSVASNNNLDMFEEMRIATLLQKG-- 327 (435)
T ss_pred HHHHHcCCeEEEChHHHH--------HHh-----cCcccHHHHHHCCCeEEEccCccccCCCcCHHHHHHHHHHHHhh--
Confidence 999999999999999875 233 5566999999999999999997543 47899999876543210
Q ss_pred CCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CC-----C-Chhhcc----CCeEEEEEEC
Q 008063 505 DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SW-----E-DFAAEV----SASIEATYVS 573 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~-----~-~~~~~~----~~~v~~v~v~ 573 (579)
.......++++++++++|.+||+.+|+++ +|+|++||.||||++|.+ .. . .+.++. ...|.+|||+
T Consensus 328 --~~~~~~~~~~~~~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~p~~d~~~~lv~~~~~~~V~~v~V~ 404 (435)
T PRK15493 328 --IHQDATALPVETALTLATKGAAEVIGMKQ-TGSLEVGKCADFITIDPSNKPHLQPADEVLSHLVYAASGKDISDVIIN 404 (435)
T ss_pred --ccCCCCcCCHHHHHHHHhHHHHHHcCCCC-CCccCCCCcCCEEEEcCCCCCCcCCccChHHhEEEeCCCCCccEEEEC
Confidence 01123469999999999999999999975 899999999999999963 21 1 122222 4579999999
Q ss_pred CEEeC
Q 008063 574 GVQAY 578 (579)
Q Consensus 574 G~~v~ 578 (579)
||+|+
T Consensus 405 G~~v~ 409 (435)
T PRK15493 405 GKRVV 409 (435)
T ss_pred CEEEE
Confidence 99886
No 7
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1.1e-36 Score=323.93 Aligned_cols=377 Identities=22% Similarity=0.299 Sum_probs=249.4
Q ss_pred ccEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 45 ADLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 45 ~~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
|+++|+|++|+++++. ...+++|+|+||+|++|++..+.. .+.++||+.|++|+|||||+|+|+.+....
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~----~~~~vID~~G~~vlPGlId~H~H~~~~~~~----- 71 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLE----DYDDHIDATGKVVIPGLIQGHIHLCQTLFR----- 71 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccC----cCCeEEeCCCCEEecCEEecccCCccccce-----
Confidence 5699999999998653 347889999999999999864321 357899999999999999999998654210
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
+... ..+...|+...
T Consensus 72 --g~~~---------------------------------~~~~~~~~~~~------------------------------ 86 (445)
T PRK07228 72 --GIAD---------------------------------DLELLDWLKDR------------------------------ 86 (445)
T ss_pred --eccC---------------------------------CCCHHHHHHhh------------------------------
Confidence 0000 00111121110
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
........++++.....+....+++.+|+|++.++++... .
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~----------~ 127 (445)
T PRK07228 87 -----------------------------IWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHH----------T 127 (445)
T ss_pred -----------------------------hhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccC----------h
Confidence 0001123455777888888999999999999999863210 0
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc----------------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET----------------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
....+.+.+. ++|......... ..+..+.++....... +.+.. .+
T Consensus 128 ~~~~~a~~~~---g~r~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~i~~~~g~~~-----~~~~~-----------~~ 188 (445)
T PRK07228 128 DSAFEAAGES---GIRAVLGKVMMDYGDDVPEGLQEDTEASLAESVRLLEKWHGADN-----GRIRY-----------AF 188 (445)
T ss_pred HHHHHHHHHc---CCeEEEecceecCCcCCCccccccHHHHHHHHHHHHHHhcCCCC-----CceEE-----------EE
Confidence 1223333332 334333111000 0111111111000000 00000 00
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHH----HHHHhcCCCCCCceEeeccCCC
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLA 422 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~ 422 (579)
.|. ....++++.++++++.|+++|+++++|+.++.. .+.+.+... +.....+..+.+..+.|+.+++
T Consensus 189 -~~~-------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~ 260 (445)
T PRK07228 189 -TPR-------FAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLD 260 (445)
T ss_pred -eCC-------CCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCC
Confidence 010 112367899999999999999999999986543 222222211 2234456778899999999999
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHccc
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRI 500 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~ 500 (579)
+++++++++.|+.+++||.++.. ++ ....|++.+++.|+++++|||++.. ..++|..++.++...
T Consensus 261 ~~~~~~~~~~g~~v~~~P~~~~~--------~~-----~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~ 327 (445)
T PRK07228 261 EEEREILAETGTHVTHCPSSNLK--------LA-----SGIAPVPDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQ 327 (445)
T ss_pred HHHHHHHHHcCCeEEEChHHhhh--------cc-----cccCcHHHHHHCCCeEEEcCCCCccCCCccHHHHHHHHHHHh
Confidence 99999999999999999987642 22 4566999999999999999997643 367888887765422
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Ch-h------h----ccCCeEE
Q 008063 501 PPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DF-A------A----EVSASIE 568 (579)
Q Consensus 501 ~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~-~------~----~~~~~v~ 568 (579)
... ......++++++|+++|.|||+.+|+++.+|+|++||.|||||+|.+++. .+ . . ....+|.
T Consensus 328 ~~~----~~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~~~~~~~~~~~v~ 403 (445)
T PRK07228 328 KVD----RLGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHLVYAAHGSDVE 403 (445)
T ss_pred hhc----cCCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcccCHHHHhheeCCCCCee
Confidence 100 01124689999999999999999999888999999999999999998653 11 1 1 2256899
Q ss_pred EEEECCEEeC
Q 008063 569 ATYVSGVQAY 578 (579)
Q Consensus 569 ~v~v~G~~v~ 578 (579)
.||++|++||
T Consensus 404 ~v~v~G~~v~ 413 (445)
T PRK07228 404 TTMVDGKIVM 413 (445)
T ss_pred EEEECCEEEE
Confidence 9999999986
No 8
>PRK08204 hypothetical protein; Provisional
Probab=100.00 E-value=7.6e-37 Score=325.63 Aligned_cols=380 Identities=20% Similarity=0.243 Sum_probs=249.5
Q ss_pred ccEEEEcCeEEeCCC--CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccc
Q 008063 45 ADLVVTNGVIFTGDD--SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARV 122 (579)
Q Consensus 45 ~~~likn~~v~~~~~--~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~ 122 (579)
.+++|+|++|+++++ ....+++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+.+....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~-----~~~~~viD~~g~~v~PGlId~H~H~~~~~~~---- 72 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-----APDAEVVDARGMIVMPGLVDTHRHTWQSVLR---- 72 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEecCEEeeeeccchhhhc----
Confidence 458899999998765 33467899999999999998643 1356899999999999999999998554221
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCC
Q 008063 123 KLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (579)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~ 202 (579)
+.. .+.+..+|+....
T Consensus 73 ---~~~---------------------------------~~~~~~~~~~~~~---------------------------- 88 (449)
T PRK08204 73 ---GIG---------------------------------ADWTLQTYFREIH---------------------------- 88 (449)
T ss_pred ---ccc---------------------------------CCCcHHHHHHhhc----------------------------
Confidence 000 0011112221100
Q ss_pred CCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
....+..++++...........++++|+|++.+++....+. ..
T Consensus 89 -------------------------------~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~------~~ 131 (449)
T PRK08204 89 -------------------------------GNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSP------EH 131 (449)
T ss_pred -------------------------------ccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCCh------hH
Confidence 00112345566777777788899999999999976432110 11
Q ss_pred HHHHHHHHhhcCCCeeEEEEccCccc-------------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccC
Q 008063 283 FADVYQWASYSEKMKIRVCLFFPLET-------------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHE 349 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~i~v~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~ 349 (579)
.....+.+. ..++|......... ........+.........+. . .....
T Consensus 132 ~~~~~~~~~---~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------~~~~~- 193 (449)
T PRK08204 132 ADAAIRGLA---EAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLT-----L---------GLAIR- 193 (449)
T ss_pred HHHHHHHHH---HcCCeEEEEccccCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceE-----E---------EEecC-
Confidence 122333332 33445443211110 01111111110000000000 0 00011
Q ss_pred CCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH--HHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHH
Q 008063 350 PYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA--NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAA 427 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~ 427 (579)
+....+++.++++++.|++.|+++.+|+.+... ....++. ....+..+.++.+.|+.++++++++
T Consensus 194 ---------~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~----l~~~g~~~~~~~i~H~~~~~~~~~~ 260 (449)
T PRK08204 194 ---------GPEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQ----LHDAGLLGPDLNLVHGNDLSDDELK 260 (449)
T ss_pred ---------CcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHH----HHHCCCCCCCeEEEecCCCCHHHHH
Confidence 112257899999999999999999999964421 1112222 2335667789999999999999999
Q ss_pred HHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCC--CC
Q 008063 428 RFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPP--GW 504 (579)
Q Consensus 428 ~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~--~~ 504 (579)
++++.|+.+++||.++. .++ ...+|++.+.++|+++++|||.+. .+.+++.+++.++..... ..
T Consensus 261 ~la~~g~~v~~~P~~~~--------~~g-----~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~a~~~~~~~~~~ 327 (449)
T PRK08204 261 LLADSGGSFSVTPEIEM--------MMG-----HGYPVTGRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARDNA 327 (449)
T ss_pred HHHHcCCCEEEChHHHh--------hhc-----CCCCcHHHHHhcCCceeeccccCCCCCcCHHHHHHHHHHHHHhhccc
Confidence 99999999999998753 223 446689999999999999999753 458999999887753211 00
Q ss_pred -----CCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-----C-hhhc----cCCeEEE
Q 008063 505 -----DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-----D-FAAE----VSASIEA 569 (579)
Q Consensus 505 -----~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-----~-~~~~----~~~~v~~ 569 (579)
...+..+.+++++++|+++|.|+|+.+|+++.+|+|++||.|||||+|.++++ + ..++ ...+|..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~~dp~~~lv~~~~~~~v~~ 407 (449)
T PRK08204 328 VHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVHDPVGAVVQSAHPGNVDS 407 (449)
T ss_pred ccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCCcChhhhheeccCCCCceE
Confidence 00123456899999999999999999999988999999999999999998543 1 2222 2469999
Q ss_pred EEECCEEeC
Q 008063 570 TYVSGVQAY 578 (579)
Q Consensus 570 v~v~G~~v~ 578 (579)
||++|++|+
T Consensus 408 v~v~G~~v~ 416 (449)
T PRK08204 408 VMVAGRAVK 416 (449)
T ss_pred EEECCEEEE
Confidence 999999986
No 9
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=100.00 E-value=7.5e-36 Score=315.36 Aligned_cols=375 Identities=21% Similarity=0.287 Sum_probs=246.3
Q ss_pred EEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 47 LVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 47 ~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
++|+|++|+++++. ...+++|+|+||||++|++..+.+. +++.++||++|++|+|||||+|+|+........ .
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~--~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~----~ 74 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPA--YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGL----A 74 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccccc--CCcCeEEeCCCCEEccCccccccchhhHHhhcc----c
Confidence 47999999998543 3467799999999999998644221 246789999999999999999999865321000 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
...+ +. +|+...
T Consensus 75 ~~~~---~~---------------------------------~~l~~~-------------------------------- 86 (411)
T cd01298 75 DDLP---LM---------------------------------EWLKDL-------------------------------- 86 (411)
T ss_pred CCCC---HH---------------------------------HHHHhh--------------------------------
Confidence 0000 11 111110
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFAD 285 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~ 285 (579)
....-...+.++.......+...++++|+|++.+++...+ ..
T Consensus 87 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-----------~~ 128 (411)
T cd01298 87 ---------------------------IWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP-----------DA 128 (411)
T ss_pred ---------------------------hhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch-----------HH
Confidence 0000012345677777888899999999999999863210 12
Q ss_pred HHHHHhhcCCCeeEEEEccCccch------------hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCC
Q 008063 286 VYQWASYSEKMKIRVCLFFPLETW------------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD 353 (579)
Q Consensus 286 ~~~~~~~~~~~~i~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~ 353 (579)
..+...+ .++++......... ++..+......... ...+|+... ...+
T Consensus 129 ~~~~~~~---~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~~---------~~~~--- 188 (411)
T cd01298 129 VAEAAEE---LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAA-----DGRIRVALA---------PHAP--- 188 (411)
T ss_pred HHHHHHH---hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCC-----CCceEEEEe---------CCCC---
Confidence 2222222 23444332211111 11111111100000 112333221 1111
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 354 EPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
..++++.+.++++.|+++|+++.+|+.++. ..+...+.+. +.....+..+.++.+.|+.+++++++++
T Consensus 189 -------~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~ 261 (411)
T cd01298 189 -------YTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIEL 261 (411)
T ss_pred -------ccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHH
Confidence 126789999999999999999999997663 3333333221 1123455566788999999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~ 506 (579)
+++.|+.+++||.++.. ++ ...++++.++++|+++++|||++.. ..+++.+++.++.....
T Consensus 262 l~~~gi~~~~~p~~~~~--------~~-----~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~---- 324 (411)
T cd01298 262 LAETGTGVAHNPASNMK--------LA-----SGIAPVPEMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKL---- 324 (411)
T ss_pred HHHcCCeEEEChHHhhh--------hh-----hCCCCHHHHHHCCCcEEEeCCCCccCCCcCHHHHHHHHHHHhcc----
Confidence 99999999999987541 22 3456899999999999999998754 46888888776533211
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--Chhhc--------cCCeEEEEEECCEE
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--DFAAE--------VSASIEATYVSGVQ 576 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~~~~~--------~~~~v~~v~v~G~~ 576 (579)
......+++++++|+++|.|||+.+|++ .+|+|++|+.|||||+|.+.+. +.+++ ...++..||++|++
T Consensus 325 ~~~~~~~~~~~~al~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~G~~ 403 (411)
T cd01298 325 AHGDPTALPAEEALEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSANGGDVDTVIVNGRV 403 (411)
T ss_pred ccCCCCcCCHHHHHHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHheEecCCCCeeEEEECCEE
Confidence 0112346999999999999999999998 6899999999999999998543 21222 25699999999999
Q ss_pred eC
Q 008063 577 AY 578 (579)
Q Consensus 577 v~ 578 (579)
||
T Consensus 404 v~ 405 (411)
T cd01298 404 VM 405 (411)
T ss_pred EE
Confidence 86
No 10
>PRK06380 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=3.1e-35 Score=310.21 Aligned_cols=369 Identities=19% Similarity=0.248 Sum_probs=247.9
Q ss_pred ccEEEEcCeEEeCCCC-CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 45 ADLVVTNGVIFTGDDS-LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 45 ~~~likn~~v~~~~~~-~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
|+++|+|++|+++++. ...+++|+|+||||++|++..+ ...++||++|++|+|||||+|+|+++...+
T Consensus 1 m~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~------~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~r----- 69 (418)
T PRK06380 1 MSILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE------EADYIIDATGKVVMPGLINTHAHVGMTASK----- 69 (418)
T ss_pred CeEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC------CCCEEEECCCCEEccCEEeeccCCCccccC-----
Confidence 5689999999998643 3467899999999999998532 345899999999999999999998765321
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
+.. +..+...|+....+
T Consensus 70 --g~~---------------------------------~~~~l~~~~~~~~~---------------------------- 86 (418)
T PRK06380 70 --GLF---------------------------------DDVDLEEFLMKTFK---------------------------- 86 (418)
T ss_pred --Ccc---------------------------------cCCCHHHHHHHHHh----------------------------
Confidence 110 01112233322110
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
.....++++++...+.++..++++|+|++.|+... .
T Consensus 87 --------------------------------~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~---------~--- 122 (418)
T PRK06380 87 --------------------------------YDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS---------E--- 122 (418)
T ss_pred --------------------------------hhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC---------h---
Confidence 01235668888888899999999999999987421 1
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc--h--------hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET--W--------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYAD 353 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~ 353 (579)
....+.+ .+.++|.+......+ . ....++.+... .... ++...
T Consensus 123 ~~~~~a~---~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----v~~~~----------------- 175 (418)
T PRK06380 123 DIIAKAA---EELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHR--NEEL-----VTPSI----------------- 175 (418)
T ss_pred HHHHHHH---HHhCCeEEEecccccCCcccccchHHHHHHHHHHHhc--CCCC-----eEEEE-----------------
Confidence 1222222 334566655321111 0 01111111100 0011 11100
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 354 EPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 354 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
++.+...++++.++++++.|+++|+++++|+.+.. ++....... -+.....+..+.+..+.|+.+++++++++
T Consensus 176 --~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~ 253 (418)
T PRK06380 176 --GVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKL 253 (418)
T ss_pred --ECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHH
Confidence 01123347899999999999999999999998653 332222211 12334456677899999999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~ 506 (579)
+++.|+.+++||.++. .++. ...+|++.+++.|+++++|||+..+ ..+++.+++.++..... .
T Consensus 254 la~~g~~v~~~P~sn~--------~l~~----~g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~~~~~~~~~~~~---~ 318 (418)
T PRK06380 254 LSKNGVKVSWNSVSNF--------KLGT----GGSPPIPEMLDNGINVTIGTDSNGSNNSLDMFEAMKFSALSVKN---E 318 (418)
T ss_pred HHHcCCEEEECHHHHH--------hhcc----CCCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHHHHHHHHHHhhh---c
Confidence 9999999999999864 2221 2466899999999999999997543 47888898876532110 0
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-C------hhhcc----CCeEEEEEECC
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-D------FAAEV----SASIEATYVSG 574 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~------~~~~~----~~~v~~v~v~G 574 (579)
.+ ....++++++|+++|.|+|+.||++ .|+|++||.||||++|.+.. . + +.++. ..+|..||++|
T Consensus 319 ~~-~~~~~~~~~~l~~aT~~gA~~lg~~--~G~l~~G~~ADlvv~d~~~~~~~p~~~~~~~~~lv~~~~~~~v~~v~v~G 395 (418)
T PRK06380 319 RW-DASIIKAQEILDFATINAAKALELN--AGSIEVGKLADLVILDARAPNMIPTRKNNIVSNIVYSLNPLNVDHVIVNG 395 (418)
T ss_pred cC-CCCcCCHHHHHHHHHHHHHHHhCCC--CCccCCCccCCEEEEeCCCCccCCCCccChHHheeecCCCCceeEEEECC
Confidence 01 1124899999999999999999994 79999999999999998721 1 1 23322 45899999999
Q ss_pred EEeC
Q 008063 575 VQAY 578 (579)
Q Consensus 575 ~~v~ 578 (579)
++|+
T Consensus 396 ~~v~ 399 (418)
T PRK06380 396 KILK 399 (418)
T ss_pred EEEE
Confidence 9986
No 11
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=2.8e-35 Score=310.62 Aligned_cols=372 Identities=21% Similarity=0.307 Sum_probs=250.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++++....+++|+|+||+|++|++... ++..++||+.|++|+|||||+|+|+.+...
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~-----~~~~~~id~~g~~v~PG~vd~H~H~~~~~~------- 69 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTP-----GDADTVIDAKGSVVMPGLVNTHTHAAMTLF------- 69 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCC-----CCCCEEEeCCCCEEecCeeecccCcchhhh-------
Confidence 35899999999886554466799999999999998522 234579999999999999999999865421
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
++... ..+...|+....
T Consensus 70 ~g~~~---------------------------------~~~~~~~~~~~~------------------------------ 86 (430)
T PRK06038 70 RGYAD---------------------------------DLPLAEWLNDHI------------------------------ 86 (430)
T ss_pred hhccC---------------------------------CCCHHHHHHhhh------------------------------
Confidence 01000 112223332210
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......++++.+...+....+++++|+|++.|.... ..
T Consensus 87 -----------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~---------~~--- 125 (430)
T PRK06038 87 -----------------------------WPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY---------MD--- 125 (430)
T ss_pred -----------------------------hhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC---------HH---
Confidence 0001234557777777888999999999999997521 01
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hh----hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WS----SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~ 354 (579)
...+... ..++|.+......+ .. ...++++....... ++++... .|
T Consensus 126 ~~~~a~~---~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~i~~~~~~~~-----g~v~~~~------------~~---- 181 (430)
T PRK06038 126 EVAKAVE---ESGLRAALSYGMIDLGDDEKGEAELKEGKRFVKEWHGAAD-----GRIKVMY------------GP---- 181 (430)
T ss_pred HHHHHHH---HhCCeEEEEchhccCCCccchHHHHHHHHHHHHHhcCCCC-----CceEEEE------------eC----
Confidence 1222222 23455543221101 11 11112111000000 0111100 01
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH-H----HHHHHhcCCCCCCceEeeccCCChhhHHHH
Q 008063 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM-Y----KSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (579)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~ 429 (579)
.....++++.++++++.|+++|+++++|+.++......+.. + .+.....+..+.+..+.|+.++++++++++
T Consensus 182 ---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~l 258 (430)
T PRK06038 182 ---HAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEIL 258 (430)
T ss_pred ---CcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHH
Confidence 11233789999999999999999999999977543332222 1 123456677888999999999999999999
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCC
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
++.|+.+++||.++.. ++ ...+|++.+.++|+++++|||++.. ..+++.+|+.++.+....
T Consensus 259 a~~g~~v~~~P~~n~~--------~~-----~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~---- 321 (430)
T PRK06038 259 RERGVNVSHNPVSNMK--------LA-----SGIAPVPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAALLHKVN---- 321 (430)
T ss_pred HhcCCEEEEChHHhhh--------hc-----cCCCCHHHHHHCCCeEEEeCCCCccCCCcCHHHHHHHHHHHhhhc----
Confidence 9999999999998752 22 4566899999999999999997543 478999998876433210
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-----CCC-hhhc----cCCeEEEEEECCEEe
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-----WED-FAAE----VSASIEATYVSGVQA 577 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-----~~~-~~~~----~~~~v~~v~v~G~~v 577 (579)
.....+++++++|+|+|.|||+.+|++ .|+|++||.||||++|.+. +.+ ...+ ...+|..||++|+++
T Consensus 322 ~~~~~~~~~~~al~~aT~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~v~~~~~~~v~~v~v~G~~v 399 (430)
T PRK06038 322 TMDPTALPARQVLEMATVNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVRDVPSHLVYSASGSDVDTTIVDGRIL 399 (430)
T ss_pred cCCCCcCCHHHHHHHHhHHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCCCChHHheeEeCCCCceeEEEECCEEE
Confidence 112356899999999999999999996 5999999999999999883 332 2233 245899999999998
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
|
T Consensus 400 ~ 400 (430)
T PRK06038 400 M 400 (430)
T ss_pred E
Confidence 6
No 12
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=100.00 E-value=2.7e-35 Score=313.29 Aligned_cols=381 Identities=20% Similarity=0.254 Sum_probs=251.1
Q ss_pred EEEEcCeEEeCCCCC--CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDSL--LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~~--~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
+++.|+.|+++++.. ..+++|+|+||||++|++..+.+ .++.++||++|++|+|||||+|+|+++....
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~---~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~------ 74 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALP---QPADEVFDARGHVVTPGLVNTHHHFYQTLTR------ 74 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCC---CCCCeEEeCCCCEEecceEeccccccchhcc------
Confidence 455567999998753 46789999999999999975432 1456899999999999999999999764221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+... ....+...|+...
T Consensus 75 -g~~~-------------------------------~~~~~~~~~~~~~------------------------------- 91 (451)
T PRK08203 75 -ALPA-------------------------------AQDAELFPWLTTL------------------------------- 91 (451)
T ss_pred -cccc-------------------------------cCCCcHHHHHHHH-------------------------------
Confidence 0000 0000111121110
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......++++.+...+.+...++++|+|++.+++..++.. ......
T Consensus 92 -----------------------------~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~----~~~~~~ 138 (451)
T PRK08203 92 -----------------------------YPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNG----LRDALD 138 (451)
T ss_pred -----------------------------hHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeecccc----ccchHH
Confidence 00011345688888889999999999999999975322211 001111
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc----------------chhhH----HHHHHhcCCCC-CCceEEceEEEEEcCccCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE----------------TWSSL----ADLINKTGHVL-SDWVYLGGVKAFADGSLGSN 343 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~----------------~~~~~----~~~~~~~~~~~-~~~~~~~g~k~~~dg~~~~~ 343 (579)
... +.....++|+....... ...+. .+.++...... .+. ++...
T Consensus 139 ~~~---~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-----i~~~~------- 203 (451)
T PRK08203 139 DQI---EAAREIGMRFHATRGSMSLGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAM-----LRIAL------- 203 (451)
T ss_pred HHH---HHHHHcCCeEEEecceeecCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCe-----EEEEE-------
Confidence 222 22233455555422110 01111 11111100000 011 11100
Q ss_pred cccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeec
Q 008063 344 SALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~ 418 (579)
.... ...++++.++++++.|+++|+++++|+.+. .+....++.+ .+.....+..+.++.+.|+
T Consensus 204 --~~~~----------~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~ 271 (451)
T PRK08203 204 --APCS----------PFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHC 271 (451)
T ss_pred --ecCC----------CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEE
Confidence 0111 223789999999999999999999998643 3334444322 1234556777889999999
Q ss_pred cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHH
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTA 496 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~ 496 (579)
.++++++++++++.|+.+++||.++. .++ ...++++.+++.|+++++|||++.+ ..+++.+++.+
T Consensus 272 ~~l~~~~~~~la~~g~~v~~~P~~~~--------~l~-----~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~ 338 (451)
T PRK08203 272 VHLDDAEIARLARTGTGVAHCPCSNM--------RLA-----SGIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQA 338 (451)
T ss_pred eCCCHHHHHHHHhcCCeEEECcHHhh--------hhc-----cCCCCHHHHHHCCCeEEEecCCCccCCCcCHHHHHHHH
Confidence 99999999999999999999998764 233 4566899999999999999998654 37899888877
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC------Chhhcc---CCeE
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE------DFAAEV---SASI 567 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~------~~~~~~---~~~v 567 (579)
+...... .....++++++|+++|.|||+.+|++ .+|+|++||.|||||+|.++.. ++..+. ..+|
T Consensus 339 ~~~~~~~-----~~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~p~~~l~~~~~~~v 412 (451)
T PRK08203 339 LLLQRLR-----YGPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRFAGAHDPVAALVLCGPPRA 412 (451)
T ss_pred HHHhhcc-----cCCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCccccCCccChHHHHHccCCCCc
Confidence 5432211 01345999999999999999999998 5899999999999999987642 222221 3589
Q ss_pred EEEEECCEEeC
Q 008063 568 EATYVSGVQAY 578 (579)
Q Consensus 568 ~~v~v~G~~v~ 578 (579)
..||++|++||
T Consensus 413 ~~v~v~G~~v~ 423 (451)
T PRK08203 413 DRVMVGGRWVV 423 (451)
T ss_pred cEEEECCEEEE
Confidence 99999999987
No 13
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=100.00 E-value=3.1e-34 Score=304.19 Aligned_cols=388 Identities=16% Similarity=0.165 Sum_probs=249.3
Q ss_pred EEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++|+|++|+++++. ...+++|+|+||+|++|++..+.... .++.++||++|++|+|||||+|+|+++........+
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~-~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~- 79 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAK-YPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMAN- 79 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccc-cCCCeEEeCCCCEEecceeeccccchhhhhcccccc-
Confidence 68999999986442 23567999999999999975433211 145689999999999999999999865422100000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
.....++ .+|+...
T Consensus 80 --~~~~~~l---------------------------------~~~l~~~------------------------------- 93 (442)
T PRK07203 80 --IPPPPDF---------------------------------ISILKNL------------------------------- 93 (442)
T ss_pred --cCCCCCH---------------------------------HHHHHhh-------------------------------
Confidence 0000001 1111110
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.....+.+++++.+...+.+...++++|+|++.++....... +...
T Consensus 94 ----------------------------~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~------~~~~ 139 (442)
T PRK07203 94 ----------------------------WWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYI------GGSL 139 (442)
T ss_pred ----------------------------eehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccc------cchH
Confidence 000112456688888888888999999999999974221110 1111
Q ss_pred -HHHHHHhhcCCCeeEEEEccCccc---hhhHHHHHHhcCCCCCCceE-Ec-eEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 -DVYQWASYSEKMKIRVCLFFPLET---WSSLADLINKTGHVLSDWVY-LG-GVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 -~~~~~~~~~~~~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~-g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
.+.+. ..+.++|.+......+ .+...+...........+.. .. .+.. ....+.
T Consensus 140 ~~~~~a---~~~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~---------~~~p~~--------- 198 (442)
T PRK07203 140 FTIADA---AKKVGLRAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEA---------MFGLHA--------- 198 (442)
T ss_pred HHHHHH---HHHhCCeEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEE---------EEccCC---------
Confidence 22222 2345566654322111 11111111110000000000 00 0000 001122
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHH----HHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDM----YKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~----~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
...++++.++++.+.|+++|+++++|+.+. .+.....+. ..+.....|..+.+..+.||.++++++++++++.|
T Consensus 199 -~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g 277 (442)
T PRK07203 199 -SFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETD 277 (442)
T ss_pred -CcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcC
Confidence 234788999999999999999999999854 444444442 22345667888899999999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
+.+++||.++. .++ ...+|+.+++++|+++++|||+. ..+++.+|+.+....... .....
T Consensus 278 ~~v~~~P~sn~--------~l~-----~g~~p~~~~~~~Gv~v~lGtD~~--~~d~~~~~~~a~~~~~~~-----~~~~~ 337 (442)
T PRK07203 278 TFVVHNPESNM--------GNA-----VGYNPVLEMIKNGILLGLGTDGY--TSDMFESYKVANFKHKHA-----GGDPN 337 (442)
T ss_pred CeEEECchhhh--------hcc-----cCCCCHHHHHHCCCeEEEcCCCC--CccHHHHHHHHHHHhccc-----cCCCC
Confidence 99999999885 233 45669999999999999999974 358899888874321110 01122
Q ss_pred CCHHHHHHHHcHHHHHhcc--cCCccccccCCCcccEEEeCCCCCC--C----hhhc----cCCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACF--LENDVGSLSPGKIADFVILSTSSWE--D----FAAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg--l~~~~G~I~~G~~ADlvvld~~~~~--~----~~~~----~~~~v~~v~v~G~~v~ 578 (579)
.+.+++++|+|.+||+.+| +++++|+|++||.||||++|.+... + ..++ ....|..||++|++|+
T Consensus 338 ~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G~~v~ 414 (442)
T PRK07203 338 VGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNEDNINGHILFGMNGGSVDTTIVNGKVVM 414 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCccccccceEeecCCCceEEEEECCEEEE
Confidence 4578999999999999999 4566899999999999999976422 1 1122 1568999999999986
No 14
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=2.9e-35 Score=314.95 Aligned_cols=387 Identities=19% Similarity=0.221 Sum_probs=250.2
Q ss_pred ccEEEEcCeEEeCCCC---CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccc
Q 008063 45 ADLVVTNGVIFTGDDS---LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMAR 121 (579)
Q Consensus 45 ~~~likn~~v~~~~~~---~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~ 121 (579)
|.++|+|++|++.++. ...+++|+|+||+|++|++... .++.++||+.|++|+|||||+|+|+.......
T Consensus 1 ~~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~-----~~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~-- 73 (488)
T PRK06151 1 MRTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFD-----GEVDRVIDAGNALVGPGFIDLDALSDLDTTIL-- 73 (488)
T ss_pred CeEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEecCEEeeecccchhhhhc--
Confidence 4689999999876542 3467899999999999998532 13457999999999999999999974311000
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhh-hCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 122 VKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~-~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
... ..+ .|+.. .++.
T Consensus 74 ----~~~----------------------------------~~~--~~~~~~~~~~------------------------ 89 (488)
T PRK06151 74 ----GLD----------------------------------NGP--GWAKGRVWSR------------------------ 89 (488)
T ss_pred ----ccc----------------------------------cch--hHHhcccCch------------------------
Confidence 000 000 01000 0000
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
. ..........++++.+......+.+++++|+|++.|++..++. .+....
T Consensus 90 ----------------------------~-~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~-~~~~~~ 139 (488)
T PRK06151 90 ----------------------------D-YVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYR-QWAETY 139 (488)
T ss_pred ----------------------------h-hhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhcc-cccccc
Confidence 0 0000001245678888899999999999999999987532211 000111
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccc--------------------h---hhHHHHHHhcCCCCCCceEEceEEEEEc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLET--------------------W---SSLADLINKTGHVLSDWVYLGGVKAFAD 337 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~--------------------~---~~~~~~~~~~~~~~~~~~~~~g~k~~~d 337 (579)
.......+.. ...++|.+....... . .+..++++.......+. ++..
T Consensus 140 ~~~~~~~~a~---~~~GiR~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----i~~~-- 209 (488)
T PRK06151 140 AEFAAAAEAA---GRLGLRVYLGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGL-----VRGM-- 209 (488)
T ss_pred chHHHHHHHH---HHcCCeEEecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCc-----eEEE--
Confidence 1122222222 234555544321100 0 01111111110001111 1111
Q ss_pred CccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHH----HHHHhcCCCCCC
Q 008063 338 GSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYK----SVVVTTGKRDQR 412 (579)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~----~~~~~~~~~~~~ 412 (579)
..|. ....++++.++++++.|+++|+++++|+. +..+.+.+.+.+. +...+.+..+.+
T Consensus 210 ----------~~p~-------~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r 272 (488)
T PRK06151 210 ----------LAPD-------RIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPR 272 (488)
T ss_pred ----------EcCC-------CCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 0111 12237899999999999999999999996 5555555544322 234556777889
Q ss_pred ceEeeccCCCh---------hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 413 FRIEHAQHLAS---------GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 413 ~~i~H~~~~~~---------~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
+.+.||.++++ ++++++++.|+.+++||.++. .++ ....+++.+.+.|+++++|||+
T Consensus 273 ~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v~~~P~~~~--------~~g-----~~~~p~~~l~~~Gv~v~lGtD~- 338 (488)
T PRK06151 273 LLIPHATYISGSPRLNYSGGDDLALLAEHGVSIVHCPLVSA--------RHG-----SALNSFDRYREAGINLALGTDT- 338 (488)
T ss_pred cEEEEEEEcCCccccccCCHHHHHHHHhcCCEEEECchhhh--------hhc-----cccccHHHHHHCCCcEEEECCC-
Confidence 99999999999 999999999999999997653 233 4566899999999999999997
Q ss_pred CCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC------
Q 008063 484 VADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE------ 557 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~------ 557 (579)
.+.+++..++.++..... .......++++++|+++|.|||+.+|+++ +|+|++||.|||||+|.+.++
T Consensus 339 -~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~~d 412 (488)
T PRK06151 339 -FPPDMVMNMRVGLILGRV----VEGDLDAASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPVFD 412 (488)
T ss_pred -CCccHHHHHHHHHHHHHH----hcCCCCCCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCccC
Confidence 346888888776532110 00112348999999999999999999987 799999999999999988653
Q ss_pred Chhhc----cCCeEEEEEECCEEeCC
Q 008063 558 DFAAE----VSASIEATYVSGVQAYP 579 (579)
Q Consensus 558 ~~~~~----~~~~v~~v~v~G~~v~~ 579 (579)
+..++ ...+|..||++|++||.
T Consensus 413 ~~~~lv~~~~~~~v~~v~v~G~~v~~ 438 (488)
T PRK06151 413 PIRTLVTGGSGRDVRAVFVDGRVVME 438 (488)
T ss_pred HHHHHHhhCCCCCccEEEECCEEEEE
Confidence 12221 13589999999999873
No 15
>PRK12393 amidohydrolase; Provisional
Probab=100.00 E-value=2.8e-34 Score=304.83 Aligned_cols=388 Identities=21% Similarity=0.254 Sum_probs=250.9
Q ss_pred ccEEEEcCe-EEeCCCC--CCeee-EEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 45 ADLVVTNGV-IFTGDDS--LLFAD-SMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 45 ~~~likn~~-v~~~~~~--~~~~~-~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
.+++|+|++ |++.... ....+ +|+|+||+|++|++. . . .++.++||++|++|+|||||+|+|+++....
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~--~--~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~r-- 74 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-T--P--LPGERVIDATDCVVYPGWVNTHHHLFQSLLK-- 74 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-C--C--CCCCeEEeCCCCEEecCEeecccCccccccc--
Confidence 468999996 7876543 23444 899999999999982 1 1 2567899999999999999999999765321
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
|... . ...+..+|+....
T Consensus 75 -----g~~~--------------------------~-----~~~~~~~wl~~~~-------------------------- 92 (457)
T PRK12393 75 -----GVPA--------------------------G-----INQSLTAWLAAVP-------------------------- 92 (457)
T ss_pred -----cccc--------------------------c-----cCCchHHHhhhCc--------------------------
Confidence 1100 0 0011112221100
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcC-CCCCccccc
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRY-YPGESVQLS 279 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~-~~~~~~~~~ 279 (579)
.......++++.+...+.+..+++++|+|++.|+... .+.. .
T Consensus 93 ---------------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~----~ 135 (457)
T PRK12393 93 ---------------------------------YRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGM----P 135 (457)
T ss_pred ---------------------------------chhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhccccc----c
Confidence 0001234668888899999999999999999997421 1111 1
Q ss_pred hHHHHHHHHHHhhcCCCeeEEEEccCccc--------------hhhHHHHHHhcCCCCCCceE--Ece-EEEEEcCccCC
Q 008063 280 WEDFADVYQWASYSEKMKIRVCLFFPLET--------------WSSLADLINKTGHVLSDWVY--LGG-VKAFADGSLGS 342 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~g-~k~~~dg~~~~ 342 (579)
.+....+.+ ...+.++|..+...... .....+...........+.. ..+ +.+
T Consensus 136 ~~~~~~~~~---a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 204 (457)
T PRK12393 136 FDTGDILFD---EAEALGMRFVLCRGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRV-------- 204 (457)
T ss_pred cchHHHHHH---HHHHcCCeEEEEccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEE--------
Confidence 111112222 22345566654221100 00001111000000000000 000 000
Q ss_pred CcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEee
Q 008063 343 NSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H 417 (579)
......| ...++++.++++.+.|+++|+++++|+.+. .++....+.+. +.....+..+.++.+.|
T Consensus 205 -~~~~~~~---------~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H 274 (457)
T PRK12393 205 -VVAPTTP---------TFSLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAH 274 (457)
T ss_pred -EEcCCCC---------CCCcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEE
Confidence 0001111 124788999999999999999999999743 33444443322 23345666778899999
Q ss_pred ccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC--CCCCHHHHHHH
Q 008063 418 AQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV--ADINPLCAIRT 495 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~--~~~~~~~~~~~ 495 (579)
|.++++++++++++.|+.+++||.++. .++ ...++++.+.+.|+++++|||++. ...+++.+|+.
T Consensus 275 ~~~l~~~d~~~la~~g~~v~~~P~sn~--------~lg-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~ 341 (457)
T PRK12393 275 LVKLDAEEIALLAQTGTGIAHCPQSNG--------RLG-----SGIAPALAMEAAGVPVSLGVDGAASNESADMLSEAHA 341 (457)
T ss_pred EecCCHHHHHHHHHcCCeEEECchhhh--------hhc-----ccCCCHHHHHHCCCeEEEecCCcccCCCccHHHHHHH
Confidence 999999999999999999999998764 344 446699999999999999999754 35899999987
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-----C-----hhhccCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-----D-----FAAEVSA 565 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-----~-----~~~~~~~ 565 (579)
++.+.... .....++++++++++|.+||+.+|+++ +|+|++|+.|||+|+|.++.. + .......
T Consensus 342 a~~~~~~~-----~~~~~~~~~~~l~~~T~~~A~~l~~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~ 415 (457)
T PRK12393 342 AWLLHRAE-----GGADATTVEDVVHWGTAGGARVLGLDA-IGTLAVGQAADLAIYDLDDPRFFGLHDPAIAPVACGGPA 415 (457)
T ss_pred HHHHhhhc-----CCCCCCCHHHHHHHHhHHHHHHhCCCC-CCCcCCCCcCCEEEEeCCCcccCCCCCchhhhhccCCCC
Confidence 76543210 122359999999999999999999986 899999999999999987422 1 1111256
Q ss_pred eEEEEEECCEEeC
Q 008063 566 SIEATYVSGVQAY 578 (579)
Q Consensus 566 ~v~~v~v~G~~v~ 578 (579)
+|..||++|++||
T Consensus 416 ~v~~v~v~G~~v~ 428 (457)
T PRK12393 416 PVKALLVNGRPVV 428 (457)
T ss_pred CeeEEEECCEEEE
Confidence 8999999999986
No 16
>PRK09228 guanine deaminase; Provisional
Probab=100.00 E-value=1.4e-34 Score=304.81 Aligned_cols=198 Identities=24% Similarity=0.300 Sum_probs=159.2
Q ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~-g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
.++++.++++.+.|+++ ++++++|+.+. .+.....+.+ .+.....|..+.+..+.|+.++++++++++++.|
T Consensus 207 t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g 286 (433)
T PRK09228 207 TSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETG 286 (433)
T ss_pred cCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcC
Confidence 37889999999999998 99999999844 4444444432 3345667778889999999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+++||.++. .++ ...++++.+.++|+++++|||.+. .+.+++..|+.+...... ...
T Consensus 287 ~~v~~~P~sn~--------~lg-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~-------~~~ 346 (433)
T PRK09228 287 AAIAFCPTSNL--------FLG-----SGLFDLKRADAAGVRVGLGTDVGGGTSFSMLQTMNEAYKVQQL-------QGY 346 (433)
T ss_pred CeEEECCccHH--------hhc-----CCCcCHHHHHHCCCeEEEecCCCCCCCCCHHHHHHHHHHHhhc-------ccC
Confidence 99999999875 233 456689999999999999999865 357899998887643211 234
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-C------------hhhcc----CCeEEEEEECC
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-D------------FAAEV----SASIEATYVSG 574 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~------------~~~~~----~~~v~~v~v~G 574 (579)
+++++++|+++|.+||+.+|+++.+|+|++||.||||++|.++. . . +..+. ..+|..|||+|
T Consensus 347 ~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~~~~V~~v~VdG 426 (433)
T PRK09228 347 RLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGDDRAVAETYVAG 426 (433)
T ss_pred CCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCCccceeEEEECC
Confidence 58999999999999999999998799999999999999998752 1 1 11121 56999999999
Q ss_pred EEeCC
Q 008063 575 VQAYP 579 (579)
Q Consensus 575 ~~v~~ 579 (579)
++|+.
T Consensus 427 ~~v~~ 431 (433)
T PRK09228 427 RPVYR 431 (433)
T ss_pred EEecc
Confidence 99874
No 17
>PRK09356 imidazolonepropionase; Validated
Probab=100.00 E-value=1.1e-34 Score=305.27 Aligned_cols=386 Identities=24% Similarity=0.259 Sum_probs=239.8
Q ss_pred CccEEEEcCeEEeCCCC------CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCc
Q 008063 44 EADLVVTNGVIFTGDDS------LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGL 117 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~------~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~ 117 (579)
+++++|+|++|+++++. ...+++|+|+||||++|++..+.+. .++.++||++|++|+|||||+|+|+.....
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~--~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~ 79 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA--AYAAEVIDAGGKLVTPGLIDCHTHLVFGGN 79 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccc--ccCceEEECCCCEEeeceEecCCCcccCCC
Confidence 46799999999998653 3467899999999999998654321 133689999999999999999999865321
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHH
Q 008063 118 QMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQ 197 (579)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~ 197 (579)
.. .++..... ..+..+++..
T Consensus 80 ~~-----------~~~~~~~~------------------------~~~~~~~~~~------------------------- 99 (406)
T PRK09356 80 RA-----------NEFELRLQ------------------------GVSYEEIAAQ------------------------- 99 (406)
T ss_pred cH-----------HHHHHHHC------------------------CCcHHHHHHh-------------------------
Confidence 10 00000000 0000000000
Q ss_pred HcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccc
Q 008063 198 LVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQ 277 (579)
Q Consensus 198 ~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~ 277 (579)
.|+. ...+ ......++++.....+..+..++++|+|++.+.+.+ +.+.
T Consensus 100 -----------~~~~-----------------~~~~-~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~--~~~~- 147 (406)
T PRK09356 100 -----------GGGI-----------------LSTV-RATRAASEEELFAQALPRLDALLAEGVTTVEIKSGY--GLDL- 147 (406)
T ss_pred -----------cCCh-----------------HHHH-HHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccC--CCCH-
Confidence 0000 0000 011234567788888999999999999999986422 1111
Q ss_pred cchHHHHHHHHHHhhcCCCeeEEEEcc--Cccc-h----hhHHH-----HHHhcCCCCCCceEEceEEEEEcCccCCCcc
Q 008063 278 LSWEDFADVYQWASYSEKMKIRVCLFF--PLET-W----SSLAD-----LINKTGHVLSDWVYLGGVKAFADGSLGSNSA 345 (579)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~v~~~~--~~~~-~----~~~~~-----~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~ 345 (579)
.......+..+.+.....+.+...... ..+. . +...+ ....... ... ...++.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~~~-------- 215 (406)
T PRK09356 148 ETELKMLRVARRLGEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAE--EGL--ADAVDVFCE-------- 215 (406)
T ss_pred HHHHHHHHHHHHHhhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHh--cCC--cceEEEEec--------
Confidence 011112233333332222222211110 0010 0 00000 1110000 000 111111110
Q ss_pred cccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh
Q 008063 346 LFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT 425 (579)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~ 425 (579)
...++++.++++++.|++.|+++.+|+.+...... ++ .. ...+ ...+.|+.++++++
T Consensus 216 --------------~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~-~~---~~-~~~~----~~~~~H~~~~~~~~ 272 (406)
T PRK09356 216 --------------TGAFSVEQSERVLEAAKALGLPVKIHAEQLSNLGG-AE---LA-AEYG----ALSADHLEYLDEAG 272 (406)
T ss_pred --------------CCCCCHHHHHHHHHHHHHCCCCEEEEEecccCCCH-HH---HH-HHcC----CcEehHhhcCCHHH
Confidence 11257899999999999999999999974221111 11 11 1122 55789999999999
Q ss_pred HHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCC
Q 008063 426 AARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 426 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~ 505 (579)
++++++.|+.+++||.++... +. ....+++.+.++|+++++|||+.. ..+++..++..+....
T Consensus 273 ~~~la~~g~~~~~~P~~~~~l--------~~----~~~~~~~~l~~~Gi~v~lgtD~~~-~~~~~~~~~~~~~~~~---- 335 (406)
T PRK09356 273 IAAMAEAGTVAVLLPGAFYFL--------RE----TQYPPARLLRDAGVPVALATDFNP-GSSPTESLLLAMNMAC---- 335 (406)
T ss_pred HHHHHHhCCEEEECccchhhc--------Cc----ccCchHHHHHHCCCeEEEeCCCCC-CCChhHHHHHHHHHHh----
Confidence 999999999999999987521 11 235688999999999999999742 1345556655543211
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeCC
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
...+++++++++++|.|||+.+|+++++|+|++||.|||||+|.++++ ....+...+|..||++|++||.
T Consensus 336 ----~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~~~~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 336 ----TLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELPYHFGVNPVETVVKNGEVVVD 406 (406)
T ss_pred ----hhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhhhhhCCCCccEEEECCEEeeC
Confidence 234699999999999999999999888999999999999999999876 3333446699999999999983
No 18
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=100.00 E-value=4.1e-34 Score=302.22 Aligned_cols=384 Identities=17% Similarity=0.174 Sum_probs=249.7
Q ss_pred EEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++|+|++|+++++. ...+++|+|+||+|++|++..+.... .++.++||++|++|+|||||+|+|+.+...+....+.
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~-~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~ 79 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQK-YPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADI 79 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhccc-CCCCeEEeCCCCEEecCeeecccchhhhhhccccccC
Confidence 47899999987543 33677999999999999986543321 2356899999999999999999998654321100000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
....+. .+|+...
T Consensus 80 ~~~~~~------------------------------------~~~l~~~------------------------------- 92 (441)
T TIGR03314 80 PPPPDF------------------------------------ISILKNL------------------------------- 92 (441)
T ss_pred CCCCCH------------------------------------HHHHHHH-------------------------------
Confidence 000111 1111110
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......+++++++...+.+..+++++|+|++.|+........ ....
T Consensus 93 ----------------------------~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~-----~~~~ 139 (441)
T TIGR03314 93 ----------------------------WWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAIT-----GSLS 139 (441)
T ss_pred ----------------------------HHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEeccccccccc-----chHH
Confidence 0001123556788888888888999999999999742111100 0112
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hhh----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WSS----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADE 354 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~ 354 (579)
.+.+.+ .+.++|.+......+ ..+ ..++........... ++.. ...+.+
T Consensus 140 ~~~~a~---~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----i~~~---------~~p~~~---- 198 (441)
T TIGR03314 140 TIRKAA---DEAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYL-----VEAH---------IGAHAP---- 198 (441)
T ss_pred HHHHHH---HHhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCc-----eEEE---------EecCCC----
Confidence 223333 234566554321111 111 111111100000001 1110 111222
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHH
Q 008063 355 PHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARF 429 (579)
Q Consensus 355 ~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~ 429 (579)
..++++.++++.+.|+++++++++|+.+. .+.....+.+ -+.....|..+.+..+.||.++++++++++
T Consensus 199 ------~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~l 272 (441)
T TIGR03314 199 ------FTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELL 272 (441)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHH
Confidence 33789999999999999999999999854 4444444433 234556788899999999999999999999
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCC
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (579)
++.|+.+++||.+|. .++ ...+|+..++++|+++++|||+. +.+++.+|+.+....... .
T Consensus 273 a~~g~~v~~cP~sn~--------~l~-----~G~~p~~~~~~~Gv~v~LGtD~~--~~d~~~em~~a~~~~~~~-----~ 332 (441)
T TIGR03314 273 NETDTFVVHNPESNM--------GNA-----VGYNPVLRMFKNGILLGLGTDGY--TSDMFESLKFANFKHKDA-----G 332 (441)
T ss_pred HHcCCcEEECHHHHh--------hhc-----cCCCCHHHHHHCCCEEEEcCCCC--CcCHHHHHHHHHHHhccc-----c
Confidence 999999999999986 333 45679999999999999999974 459999999886432110 0
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcc--cCCccccccCCCcccEEEeCCCCCC--Chh----hc----cCCeEEEEEECCEEe
Q 008063 510 PSERISLTDALIAHTLSAARACF--LENDVGSLSPGKIADFVILSTSSWE--DFA----AE----VSASIEATYVSGVQA 577 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lg--l~~~~G~I~~G~~ADlvvld~~~~~--~~~----~~----~~~~v~~v~v~G~~v 577 (579)
........++++|+|.++|+.+| +..++|+|++||.|||+++|.+... +.. .+ ...+|..||++|++|
T Consensus 333 ~~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v 412 (441)
T TIGR03314 333 GDLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNINGHILFGMNGGSVDSTMVNGKVV 412 (441)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhccccceecCCCCeeEEEEECCEEE
Confidence 11123457899999999999997 4556899999999999999976421 111 11 256999999999998
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
|
T Consensus 413 ~ 413 (441)
T TIGR03314 413 M 413 (441)
T ss_pred E
Confidence 6
No 19
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=5e-34 Score=300.76 Aligned_cols=379 Identities=18% Similarity=0.244 Sum_probs=246.0
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++.+.....++|+|+||+|++|++... .+..++||+.|++|+|||||+|+|+++....
T Consensus 1 ~~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~-----~~~~~~id~~~~~v~Pg~vd~H~H~~~~~~r------ 69 (424)
T PRK08393 1 MSILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNIN-----KPADTVIDASGSVVSPGFINAHTHSPMVLLR------ 69 (424)
T ss_pred CeEEEECcEEEeCCCCceecceEEEECCEEEEecCCCC-----CCCCeEEeCCCCEEccCeeeeccCcchHhhh------
Confidence 46899999999987654456789999999999987532 1345799999999999999999998654210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+.. +..+..+|+....
T Consensus 70 -g~~---------------------------------~~~~l~~~l~~~~------------------------------ 85 (424)
T PRK08393 70 -GLA---------------------------------DDVPLMEWLQNYI------------------------------ 85 (424)
T ss_pred -hcc---------------------------------CCCCHHHHHHhhh------------------------------
Confidence 000 0112222322100
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.......++++++.....+...++++|+|++.++... . .
T Consensus 86 -----------------------------~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~---------~---~ 124 (424)
T PRK08393 86 -----------------------------WPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFH---------M---E 124 (424)
T ss_pred -----------------------------ccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccC---------H---H
Confidence 0001234567888888999999999999999997421 1 1
Q ss_pred HHHHHHhhcCCCeeEEEEccCc---cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 285 DVYQWASYSEKMKIRVCLFFPL---ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
...+... ..++|....... .......+......... +++. ....+.+ ........+ .
T Consensus 125 ~~~~a~~---~~G~r~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-----~~~~~~v-~~~~~p~~~----------~ 184 (424)
T PRK08393 125 EVAKATL---EVGLRGYLSYGMVDLGDEEKREKEIKETEKLM-EFIE-----KLNSPRV-HFVFGPHAP----------Y 184 (424)
T ss_pred HHHHHHH---HhCCeEEEeceEecCCCccchHHHHHHHHHHH-HHHh-----cCCCCce-EEEEeCCcC----------C
Confidence 2222222 223444332111 11000011110000000 0000 0000000 000011112 2
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.++++.++++++.|+++|+++++|+.+. .++....+.+ .......+..+.+..+.|+.++++++++++++.|+.+
T Consensus 185 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v 264 (424)
T PRK08393 185 TCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTV 264 (424)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEE
Confidence 3689999999999999999999999744 3334333322 2234556777889999999999999999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
++||.++. .++ ...++++.+.++|+++++|||++.+ ..+++.+++.+....... . .....+
T Consensus 265 ~~~P~sn~--------~lg-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~---~-~~~~~~ 327 (424)
T PRK08393 265 AHNPASNM--------KLG-----SGVMPLRKLLNAGVNVALGTDGAASNNNLDMLREMKLAALLHKVH---N-LDPTIA 327 (424)
T ss_pred EECHHHHH--------hhc-----cCCCCHHHHHHCCCcEEEecCCCccCCchhHHHHHHHHHHHHhhc---c-CCCCcC
Confidence 99998754 233 4466899999999999999998653 368998988764221100 0 011236
Q ss_pred CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-----CCh-hhc----cCCeEEEEEECCEEeC
Q 008063 515 SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-----EDF-AAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-----~~~-~~~----~~~~v~~v~v~G~~v~ 578 (579)
+++++++++|.|||+.+|++ .|+|++||.||||++|.+.. .++ ..+ ...+|..|||+|++||
T Consensus 328 ~~~~al~~aT~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 399 (424)
T PRK08393 328 DAETVFRMATQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINNPISHLVYSANGNDVETTIVDGKIVM 399 (424)
T ss_pred CHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCChHHHeeeeCCCCCeeEEEECCEEEE
Confidence 89999999999999999997 49999999999999998732 221 221 1458999999999986
No 20
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=100.00 E-value=1.2e-34 Score=305.42 Aligned_cols=198 Identities=21% Similarity=0.226 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHHCC-CeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCc
Q 008063 363 MELESLLSMTMASDKSG-LQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g-~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i 434 (579)
++++.++++.+.|+++| +++++|+.+. .++....+.+ .+.....|..+.+..+.||.++++++++++++.|+
T Consensus 205 ~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~ 284 (429)
T cd01303 205 CSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGA 284 (429)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 68899999999999999 9999999754 3344443332 23455667778899999999999999999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
.+++||.++.. ++ ....+++.+.+.|+++++|||+..+ +.+++.+++.++....... .......+
T Consensus 285 ~v~~~P~sn~~--------l~-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~ 350 (429)
T cd01303 285 SVAHCPTSNLF--------LG-----SGLFDVRKLLDAGIKVGLGTDVGGGTSFSMLDTLRQAYKVSRLLG-YELGGHAK 350 (429)
T ss_pred EEEECccchhh--------hc-----cCCCCHHHHHHCCCeEEEeccCCCCCCccHHHHHHHHHHHHHhhc-cccCCcCC
Confidence 99999998752 23 4556899999999999999998653 5789999888765321100 01123457
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-C-------------hhhcc----CCeEEEEEECC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-D-------------FAAEV----SASIEATYVSG 574 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~-------------~~~~~----~~~v~~v~v~G 574 (579)
++++++|+|+|.|||+.+|+++++|+|++||.|||||+|.++.. . +.++. ...|..|||+|
T Consensus 351 ~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~~~~~~~~d~~~~lV~~~~~~~V~~v~V~G 429 (429)
T cd01303 351 LSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRVESLEEALFKFLYLGDDRNIREVYVAG 429 (429)
T ss_pred CCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCccccccccccccchhhHHHHHeeeCCCCCeeEEEeCC
Confidence 89999999999999999999988999999999999999988642 1 11221 56899999998
No 21
>PRK08418 chlorohydrolase; Provisional
Probab=100.00 E-value=6.2e-34 Score=297.34 Aligned_cols=368 Identities=14% Similarity=0.175 Sum_probs=238.0
Q ss_pred EEEEcCeEEeCCCC--CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 47 LVVTNGVIFTGDDS--LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 47 ~likn~~v~~~~~~--~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+|+|++|+++++. ...+++|+|+ |+|++|++..+.... .++.++||+.|++|+|||||+|+|+.+....
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~-~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~r------ 73 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKK-YPNAKIQFFKNSVLLPAFINPHTHLEFSANK------ 73 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhh-CCCCcEEecCCcEEccCccccccchhhhhhc------
Confidence 57899999988642 3467799999 999999986554321 2345699999999999999999998654321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+... ..+...|+......
T Consensus 74 -g~~~---------------------------------~~~~~~wl~~~~~~---------------------------- 91 (408)
T PRK08418 74 -TTLD---------------------------------YGDFIPWLGSVINH---------------------------- 91 (408)
T ss_pred -cccC---------------------------------CCchHHHHHHHhhh----------------------------
Confidence 1000 01111233221100
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
...+.+++.+...+.+..+++++|+|++.++..+ ..
T Consensus 92 --------------------------------~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~----------~~-- 127 (408)
T PRK08418 92 --------------------------------REDLLEKCKGALIQQAINEMLKSGVGTIGAISSF----------GI-- 127 (408)
T ss_pred --------------------------------hhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecc----------hh--
Confidence 0012335556667788889999999999987421 01
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc-----hhh-HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET-----WSS-LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
..+. ..+.++|......... ... ..+....... . .......++. ....+.|
T Consensus 128 -~~~a---~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---------~~aph~~-------- 184 (408)
T PRK08418 128 -DLEI---CAKSPLRVVFFNEILGSNASAVDELYQDFLARFEE-S-KKFKSKKFIP---------AIAIHSP-------- 184 (408)
T ss_pred -hHHH---HHhcCCeEEEEeeeeCCCccchhhhHHHHHHHHHh-h-hcccCCceeE---------EEeCCCC--------
Confidence 1111 2245566654221110 000 1111111000 0 0000000100 1112233
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHH--------------------HHHHhcCCCCCCceEee
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYK--------------------SVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~H 417 (579)
..++++.++++.+.|+++|+++++|+.+.. +.....+... +.....+ +.+..+.|
T Consensus 185 --~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g--~~~~~~~H 260 (408)
T PRK08418 185 --YSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFK--GLRTLFTH 260 (408)
T ss_pred --CCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhC--CCCeEEEe
Confidence 337899999999999999999999998543 3333332211 1111222 45889999
Q ss_pred ccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHH
Q 008063 418 AQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRT 495 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~ 495 (579)
|.++++++++++++.|+.+++||.++. +++ ...+|++.+++.|+++++|||+..+ ..+++.+|+.
T Consensus 261 ~~~~~~~di~~la~~g~~v~~cP~sn~--------~lg-----~g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~~em~~ 327 (408)
T PRK08418 261 CVYASEEELEKIKSKNASITHCPFSNR--------LLS-----NKALDLEKAKKAGINYSIATDGLSSNISLSLLDELRA 327 (408)
T ss_pred cccCCHHHHHHHHHcCCcEEECHhHHH--------Hhc-----CCCccHHHHHhCCCeEEEeCCCCCCCCCcCHHHHHHH
Confidence 999999999999999999999999875 444 4456999999999999999997543 4789999998
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CCCh----hh--ccCCeEE
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WEDF----AA--EVSASIE 568 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~~~----~~--~~~~~v~ 568 (579)
++..... .....+++++|+|+|.|+|+.||++ .|+|++||.||||++|.+. ..++ -. +....|.
T Consensus 328 ~~~~~~~-------~~~~~~~~~~l~~aT~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~~~~~~~~~~~~~~~~~v~ 398 (408)
T PRK08418 328 ALLTHAN-------MPLLELAKILLLSATRYGAKALGLN--NGEIKEGKDADLSVFELPEECTKKEQLPLQFILHAKEVK 398 (408)
T ss_pred HHHHhcc-------CCccccHHHHHHHHHHHHHHHhCCC--CccccCCCccCEEEEeCCCCCCChhHhHHHHHhccCccc
Confidence 7643211 0111357999999999999999996 6999999999999999862 2121 11 1355899
Q ss_pred EEEECCEEe
Q 008063 569 ATYVSGVQA 577 (579)
Q Consensus 569 ~v~v~G~~v 577 (579)
.|||+|++|
T Consensus 399 ~v~v~G~~v 407 (408)
T PRK08418 399 KLFIGGKEV 407 (408)
T ss_pred eEEECCEEc
Confidence 999999987
No 22
>PRK07213 chlorohydrolase; Provisional
Probab=100.00 E-value=3.1e-33 Score=289.83 Aligned_cols=358 Identities=21% Similarity=0.269 Sum_probs=236.7
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCC
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRG 126 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~ 126 (579)
++|+|++|+++.+....+++|+|++|+|.+|++.. ++.++||++|++| |||||+|+|+......
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~-------~~~~~id~~g~~v-PGlvd~H~H~~~~~~r-------- 65 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV-------HEGNVIDAKGLVI-PPLINAHTHIGDSSIK-------- 65 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC-------CCCeEEeCCCCEe-cceeeeccccCchhhh--------
Confidence 68999999997654446778999999999998741 3457999999999 9999999998653210
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCC
Q 008063 127 VSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSE 206 (579)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~ 206 (579)
|.++ ..+..+|+..
T Consensus 66 -------------------------g~~~-------~~~l~~~~~~---------------------------------- 79 (375)
T PRK07213 66 -------------------------DIGI-------GKSLDELVKP---------------------------------- 79 (375)
T ss_pred -------------------------cCCC-------CCCHHHHccC----------------------------------
Confidence 0000 0011111100
Q ss_pred CCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHH
Q 008063 207 DPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADV 286 (579)
Q Consensus 207 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~ 286 (579)
|.| +. .......++++.+...+.....++++|+|++.|+... + .... ..
T Consensus 80 -~~~-------------~~--------~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~--~------~~~~-~~ 128 (375)
T PRK07213 80 -PNG-------------LK--------HKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREG--G------IKGI-NL 128 (375)
T ss_pred -CCc-------------ch--------HHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhc--C------hhHH-HH
Confidence 000 00 0011245678888999999999999999999996321 1 1111 12
Q ss_pred HHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCC
Q 008063 287 YQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME 364 (579)
Q Consensus 287 ~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
..++. ..++++......... .+...+.... +++ . .+| ... .+...++
T Consensus 129 ~~~a~--~~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~-----~-~~g------~~~----------~~~~~~s 177 (375)
T PRK07213 129 LKKAS--SDLPIKPIILGRPTEADENELKKEIRE-------ILK-----N-SDG------IGL----------SGANEYS 177 (375)
T ss_pred HHHHH--HcCCCceEEecCCCcccchhhHHHHHH-------HHH-----h-ccc------ccc----------cccccCC
Confidence 22221 345555543221110 1111111110 000 0 000 001 1122368
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEec
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQ 439 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~ 439 (579)
++.++++++.|+++|+++++|+.+.. +.....+.+ -+...+.|.. .+ .+.|+.++++++++++++.|+.+++|
T Consensus 178 ~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~-~~-~i~H~~~~~~~~i~~la~~g~~v~~~ 255 (375)
T PRK07213 178 DEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK-PD-FIVHATHPSNDDLELLKENNIPVVVC 255 (375)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC-CC-EEEECCCCCHHHHHHHHHcCCcEEEC
Confidence 89999999999999999999997543 333333322 1223334543 33 68999999999999999999999999
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
|.++.. ++ ...+|++.++++|+++++|||+... ..+++.+++.+... .++++++
T Consensus 256 P~sn~~--------l~-----~g~~~v~~l~~~Gv~v~lGTD~~~~~~~~~~~e~~~~~~~------------~~~~~~~ 310 (375)
T PRK07213 256 PRANAS--------FN-----VGLPPLNEMLEKGILLGIGTDNFMANSPSIFREMEFIYKL------------YHIEPKE 310 (375)
T ss_pred Ccchhh--------hc-----cCCccHHHHHHCCCEEEEeeCCCCCchHhHHHHHHHHHHH------------hCcCHHH
Confidence 998862 23 4566899999999999999997533 36788888877532 2489999
Q ss_pred HHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC---CC-Chhhcc----CCeEEEEEECCEE
Q 008063 519 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS---WE-DFAAEV----SASIEATYVSGVQ 576 (579)
Q Consensus 519 al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~---~~-~~~~~~----~~~v~~v~v~G~~ 576 (579)
+++++|.|+|+.||+++ +|+|+|||.||||++|.+. .. +...+. ...|..|||+||+
T Consensus 311 ~l~~aT~~gA~~lg~~~-~G~l~~G~~ADlvv~d~~~~~p~~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 311 ILKMATINGAKILGLIN-VGLIEEGFKADFTFIKPTNIKFSKNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred HHHHHHHHHHHHhCCCC-cCCcCCCCcccEEEEcCccccccCCchHHHhhhccCCCceEEEECCcC
Confidence 99999999999999986 8999999999999998652 22 233332 5589999999984
No 23
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=100.00 E-value=1e-33 Score=297.73 Aligned_cols=378 Identities=20% Similarity=0.199 Sum_probs=232.7
Q ss_pred EEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccCCC
Q 008063 48 VVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGV 127 (579)
Q Consensus 48 likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~~ 127 (579)
+|+|++|+|+. ....+|+|+||+|++|++..+. +++.++||++|++|+|||||+|+|++..............
T Consensus 1 ~~~~~~~~~~~---~~~~~v~I~~g~I~~Vg~~~~~----~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~ 73 (398)
T cd01293 1 LLRNARLADGG---TALVDIAIEDGRIAAIGPALAV----PPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGG 73 (398)
T ss_pred CeeeeEEeCCC---ceEEEEEEECCEEEEEecCCCC----CCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCcc
Confidence 47899999973 3677999999999999986442 2567899999999999999999998542110000000000
Q ss_pred CCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCCCC
Q 008063 128 SHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSED 207 (579)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~~~ 207 (579)
.++.
T Consensus 74 ----------------------------------------~~~~------------------------------------ 77 (398)
T cd01293 74 ----------------------------------------TLLE------------------------------------ 77 (398)
T ss_pred ----------------------------------------ccHH------------------------------------
Confidence 0000
Q ss_pred CCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHH
Q 008063 208 PNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVY 287 (579)
Q Consensus 208 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~ 287 (579)
..... .......++++........+..++++|+|++.+++...+. .....++...+..
T Consensus 78 --------------------~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~-~~~~~~~~~~~~~ 135 (398)
T cd01293 78 --------------------AIIAW-EERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPA-AGLKALEALLELR 135 (398)
T ss_pred --------------------HHHHH-HHHHhccChHHHHHHHHHHHHHHHHcChhheeeeeccccc-ccchHHHHHHHHH
Confidence 00000 0011234567888888889999999999999876532111 0111122222222
Q ss_pred HHHhhcCCCeeEEEEccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCH
Q 008063 288 QWASYSEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMEL 365 (579)
Q Consensus 288 ~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+... ..+......+.....+ ++..+..+.......+. . + + . +.. ....+++
T Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~--------~--~---~----~--~~~------~~~~~s~ 188 (398)
T cd01293 136 EEWA--DLIDLQIVAFPQHGLLSTPGGEELMREALKMGADV--------V--G---G----I--PPA------EIDEDGE 188 (398)
T ss_pred HHhh--ccceEEEEeccCccccCCCCHHHHHHHHHHhCCCE--------E--e---C----C--CCC------cCCccHH
Confidence 2221 1121221111111000 11112211110000000 0 0 0 0 000 0122678
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchH-----HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHHhhCC
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQG 433 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~~~~~ 433 (579)
+.++++++.|+++|+++.+|+.+.. .+...++. ....+.. .+..+.|+.++++ +.++++++.|
T Consensus 189 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~----~~~~g~~-~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g 263 (398)
T cd01293 189 ESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEE----AERRGMQ-GRVTCSHATALGSLPEAEVSRLADLLAEAG 263 (398)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHH----HHHhCCC-CCEEeeecchhhcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999997331 22222222 2234443 5789999998763 4589999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC------CCCCHHHHHHHHHcccCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV------ADINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~------~~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
+.+++||.++...... ...++ +. ...++++.++++|+++++|||.+. ...++++.++.+..+...
T Consensus 264 ~~v~~~p~s~~~l~~~-~~~~~--~~-~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 334 (398)
T cd01293 264 ISVVSLPPINLYLQGR-EDTTP--KR-RGVTPVKELRAAGVNVALGSDNVRDPWYPFGSGDMLEVANLAAHIAQL----- 334 (398)
T ss_pred CeEEeCCCcchhhccc-ccCCC--CC-CCCCcHHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHHHHHHHHcC-----
Confidence 9999999987532111 00111 11 456789999999999999999742 235788888876543211
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEe
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQA 577 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v 577 (579)
....+.+++|+++|.|+|+++|+ ..|+|+|||.||||++|.|++.++... ..++..||++|++|
T Consensus 335 ---~~~~~~~~al~~aT~~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~~~~~~~-~~~~~~v~~~G~~~ 398 (398)
T cd01293 335 ---GTPEDLALALDLITGNAARALGL--EDYGIKVGCPADLVLLDAEDVAEAVAR-QPPRRVVIRKGRVV 398 (398)
T ss_pred ---CChhhHHHHHHhcChhhhhhcCC--cCcccccCCcceEEEECCCCHHHHHhc-CCCccEEEECCEEC
Confidence 01135689999999999999999 379999999999999999998754333 34899999999975
No 24
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=100.00 E-value=5.1e-33 Score=291.86 Aligned_cols=193 Identities=24% Similarity=0.328 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHC-CCeEEEEecch-HHHHHHHHHH------HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC
Q 008063 362 VMELESLLSMTMASDKS-GLQVAIHAIGD-RANDLVLDMY------KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG 433 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~-g~~i~iH~~g~-~~~~~~~~~~------~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~ 433 (579)
.++++.++++++.|+++ |+++++|+.+. .+.+...+.+ .+...+.|..+.+..+.||.++++++++++++.|
T Consensus 182 ~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g 261 (401)
T TIGR02967 182 TSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETG 261 (401)
T ss_pred cCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcC
Confidence 37889999999999999 99999999744 4455555432 2345567778889999999999999999999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+++||.++. .++ ...++++.+.++|+++++|||+... ..+++..++.++..... ...
T Consensus 262 ~~v~~~P~~~~--------~~~-----~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~-------~~~ 321 (401)
T TIGR02967 262 AAIAHCPTSNL--------FLG-----SGLFNLKKALEHGVRVGLGTDVGGGTSFSMLQTLREAYKVSQL-------QGA 321 (401)
T ss_pred CeEEEChHHHH--------Hhc-----cCCCCHHHHHHCCCeEEEecCCCCCCCcCHHHHHHHHHHHhhh-------cCC
Confidence 99999999864 223 4456899999999999999997643 46889888877653211 124
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--------------Chhhcc----CCeEEEEEECC
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--------------DFAAEV----SASIEATYVSG 574 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--------------~~~~~~----~~~v~~v~v~G 574 (579)
+++++++|+|+|.|||+.||+++++|+|++||.||||++|.+... ++.++. ..+|..|||+|
T Consensus 322 ~~~~~~~l~~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 322 RLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALRFEGADTLEDKLFKLMYLGDDRNVAETYVAG 401 (401)
T ss_pred CCCHHHHHHHHHHHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccccccccchhhHHHHheeecCccceeEEEeCC
Confidence 689999999999999999999988999999999999999976322 122222 55899999998
No 25
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=100.00 E-value=5.6e-33 Score=295.32 Aligned_cols=200 Identities=22% Similarity=0.212 Sum_probs=154.8
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.++++.++++++.| ++|+++++|+.+. .++....+.+. +...+.+..+.++.+.||.++++++++++++.|+.+
T Consensus 212 ~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v 290 (456)
T PRK09229 212 AVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVA 290 (456)
T ss_pred CCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeE
Confidence 37899999999999 9999999999743 44444444332 234456778889999999999999999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHccc--CCCCCCCC-CCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRI--PPGWDNAW-IPSER 513 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~ 513 (579)
++||.++. .++ ...+|++.++++|+++++|||+.. ..+++..++.+.... .......+ ..+..
T Consensus 291 ~~~P~sn~--------~lg-----~g~~p~~~l~~~Gv~v~lGtD~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (456)
T PRK09229 291 GLCPTTEA--------NLG-----DGIFPAVDYLAAGGRFGIGSDSHV-SIDLVEELRLLEYGQRLRDRRRNVLAAAAQP 356 (456)
T ss_pred EECchhhh--------hhc-----CCCCCHHHHHHCCCeEEEecCCCC-CCCHHHHHHHHHHHHHHhhcCCccccccccc
Confidence 99999764 334 556699999999999999999743 468888887765321 10001111 12257
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C--hhhc--------cCCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D--FAAE--------VSASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~--~~~~--------~~~~v~~v~v~G~~v~ 578 (579)
++.+++|+|+|.|+|+++|+ + +|+|++||.|||||+|.+.+. + ..++ ...+|..|||+|++||
T Consensus 357 ~~~~~~l~~aT~~gA~alg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 431 (456)
T PRK09229 357 SVGRRLFDAALAGGAQALGR-A-IGGLAVGARADLVVLDLDHPALAGREGDALLDRWVFAGGDAAVRDVWVAGRWVV 431 (456)
T ss_pred chHHHHHHHHHHHHHHHhCC-C-cCCcCCCCccCEEEEeCCCccccCCChhhHHHHHhhcCCCCCeeEEEECCEEEE
Confidence 89999999999999999999 3 899999999999999987632 1 1121 2468999999999987
No 26
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.1e-35 Score=300.01 Aligned_cols=182 Identities=25% Similarity=0.292 Sum_probs=142.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhh--CCcE-EE
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGD--QGIV-AS 437 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~--~~i~-~~ 437 (579)
..++++++++++..|.+.|+++.+|+++...+...++.. ...+.|+.+++++....+++ .|+. ..
T Consensus 215 ~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~~~A~~~g------------~~s~~H~~~ld~~~~~~~a~~~~g~~~~~ 282 (406)
T COG1228 215 GQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRLG------------AKSAEHGTLLDHETAALLAEKGAGTPVPV 282 (406)
T ss_pred cccCHHHHHHHHHHHHHCCCceEEEecccchHHHHHHhC------------cceehhhhhcCHhHHHHHhhccCCCcccc
Confidence 347899999999999999999999998766555444432 45899999999999999999 6663 34
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
+.|.... .+.. ....+++.+.+.|++++++||.+..+ .+....|..++. .++|
T Consensus 283 l~p~~~~--------~l~e----~~~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~-------------~gmt 337 (406)
T COG1228 283 LLPRTKF--------ELRE----LDYKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVR-------------LGMT 337 (406)
T ss_pred ccchhhh--------hhhc----ccchhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHH-------------cCCC
Confidence 4444332 1111 33456899999999999999987666 344445544443 3499
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChh-hccCCeEEEEEECCEEeCC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA-AEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~-~~~~~~v~~v~v~G~~v~~ 579 (579)
++|||+++|.|||+.||+++++|+||+||.|||||||+||+.++. ...-.++..||++|+++++
T Consensus 338 p~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y~~~~~~v~~v~k~G~~~~~ 402 (406)
T COG1228 338 PEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPYFLGLNKVEAVIKDGKVVYE 402 (406)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhccccccCCceEEEEECCEEeec
Confidence 999999999999999999999999999999999999999987531 1124599999999999974
No 27
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=100.00 E-value=3.1e-32 Score=286.23 Aligned_cols=196 Identities=23% Similarity=0.272 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHH----HHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMY----KSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~----~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
++++.+++.++.|++ |+++++|+.+. .+.....+.+ .+.....+..+.+..+.||.++++++++++++.|+.++
T Consensus 204 ~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~ 282 (418)
T cd01313 204 VPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVG 282 (418)
T ss_pred CCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 789999999999999 99999999643 3333333221 12344467778899999999999999999999999999
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcc--cCCCCCCCCCCCCCCC
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKR--IPPGWDNAWIPSERIS 515 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ls 515 (579)
+||.++. +++ ...+|++.+.++|+++++|||+.. ..+++..++.+... ........+.....++
T Consensus 283 ~~P~sn~--------~lg-----~g~~p~~~l~~~Gv~v~lGtD~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (418)
T cd01313 283 LCPTTEA--------NLG-----DGIFPAAALLAAGGRIGIGSDSNA-RIDLLEELRQLEYSQRLRDRARNVLATAGGSS 348 (418)
T ss_pred ECCCchh--------hcc-----CCCCCHHHHHHCCCcEEEecCCCC-CcCHHHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999876 233 456689999999999999999643 36788777766431 1100001122345799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--C------hhhcc----CCeEEEEEECCE
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--D------FAAEV----SASIEATYVSGV 575 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~------~~~~~----~~~v~~v~v~G~ 575 (579)
++++|+++|.|+|++||++ +|+|++||.|||||+|.+... + +..+. ...|..|||+|+
T Consensus 349 ~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~~~~~p~~~~~~~~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 349 ARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDHPSLAGALPDTLLDAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCCccccCCCchhHHHHHeecCCCCceeEEEeCCC
Confidence 9999999999999999997 899999999999999977422 1 22222 458999999996
No 28
>PRK07572 cytosine deaminase; Validated
Probab=100.00 E-value=1.8e-32 Score=288.94 Aligned_cols=384 Identities=21% Similarity=0.244 Sum_probs=240.0
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++.. ..+|+|+||+|++|++..+ ....++||++|++|+|||||+|+|+......
T Consensus 2 ~~~~i~~~~i~~~~~----~~~i~i~~g~I~~v~~~~~-----~~~~~~id~~g~~~~PG~id~h~h~~~~~~~------ 66 (426)
T PRK07572 2 FDLIVRNANLPDGRT----GIDIGIAGGRIAAVEPGLQ-----AEAAEEIDAAGRLVSPPFVDPHFHMDATLSY------ 66 (426)
T ss_pred CcEEEECeEECCCCe----eEEEEEECCEEEEecCCCC-----CCcCceEeCCCCEEcccceehhhCcchhhcc------
Confidence 568899999998542 4589999999999997532 1245799999999999999999998532100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
| .+.
T Consensus 67 ---------------------------~-----------~~~-------------------------------------- 70 (426)
T PRK07572 67 ---------------------------G-----------LPR-------------------------------------- 70 (426)
T ss_pred ---------------------------C-----------CCC--------------------------------------
Confidence 0 000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
-...|.+.+.. .......+..++++.+.......+.++++|+|++.++.... .. ....+....
T Consensus 71 --------------~~~~g~l~e~l-~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~-~~-~~~~~~a~~ 133 (426)
T PRK07572 71 --------------VNASGTLLEGI-ALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVC-DP-RLLAVEALL 133 (426)
T ss_pred --------------CCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccC-CC-cccHHHHHH
Confidence 00112222211 22223334567899999999999999999999999963210 11 011222222
Q ss_pred HHHHHHhhcCCCeeEEEEccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..... ...+.+....+.....+ +...+..+..-.. |..++ | + .|+.... ..
T Consensus 134 ~~~~~~--~~~~~~~~~a~~~~g~~~~~~~~~~~~~~l~~--------g~d~i--G---g------~p~~~~~-----~~ 187 (426)
T PRK07572 134 EVRERV--APYLDLQLVAFPQDGVLRSPGAVDNLERALDM--------GVDVV--G---G------IPHFERT-----MA 187 (426)
T ss_pred HHHHHh--hccceEEEEeccChhhccCccHHHHHHHHHHc--------CCCEE--e---C------CCCCccc-----cc
Confidence 211111 12222222222111000 1111111110000 11111 0 0 0111000 00
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHHhhCCc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~~~~~i 434 (579)
.+.+.++.+++.|+++|+++.+|+. +..+....++.+.+...+.|..+ +..+.||..+++ ++++++++.|+
T Consensus 188 ~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~ 266 (426)
T PRK07572 188 DGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGV 266 (426)
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCC
Confidence 2348999999999999999999995 44555555565555556677766 888999987765 56999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC------CCCCHHHHHHHHHcccCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV------ADINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
.+++||.++........ ..+ .. ....+++.++++|+++++|||... ...++++.++.+......
T Consensus 267 ~vv~~P~~n~~l~~~~~-~~~--~~-~g~~~v~~l~~~GV~v~lGtD~~~~~~~~~~~~~~~e~~~~~~~~~~~------ 336 (426)
T PRK07572 267 NAIANPLINITLQGRHD-TYP--KR-RGMTRVPELMAAGINVAFGHDCVMDPWYSLGSGDMLEVAHMGLHVAQM------ 336 (426)
T ss_pred eEEECchhhhhhcCCCC-CCC--CC-CCCcCHHHHHHCCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHcC------
Confidence 99999987642110000 000 11 346689999999999999999742 235777777765432110
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC-CCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS-TSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld-~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.....++++|+++|.|||++||+++ .| |++||.||||++| .+|++.+... .++..||++|++|+.
T Consensus 337 --~~~~~l~~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~~p~e~i~~~--~~~~~V~~~G~~v~~ 402 (426)
T PRK07572 337 --TGQDAMRACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQARDPIEAIRLR--AARLAVIRRGKVIAR 402 (426)
T ss_pred --CCHHHHHHHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHHhc--CCceEEEECCEEEec
Confidence 0012356778899999999999987 67 9999999999999 5887755433 378999999999863
No 29
>PRK09230 cytosine deaminase; Provisional
Probab=100.00 E-value=9.2e-32 Score=282.29 Aligned_cols=387 Identities=15% Similarity=0.183 Sum_probs=241.9
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
..++|+|++|+++.. ..+|+|+||+|++|++..+.. .++.++||++|++|+|||||+|+|+......
T Consensus 4 ~~~li~~~~~~~~~~----~~~i~i~~g~I~~i~~~~~~~---~~~~~~id~~g~~v~PGlid~H~H~~~~~~~------ 70 (426)
T PRK09230 4 ALMTIKNARLPGKEG----LWQITIEDGKISAIEPQSEAS---LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTA------ 70 (426)
T ss_pred ceEEEECcEEcCCCe----eEEEEEECCEEEEecCCCCCC---CCCCceEeCCCCEeccceeEEEEccccceec------
Confidence 468999999987532 258999999999999863211 1356799999999999999999998543110
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+.. .|. ...+...|+..
T Consensus 71 -~~~-------------------------~~~-----~~~~l~~~i~~-------------------------------- 87 (426)
T PRK09230 71 -GEP-------------------------NWN-----QSGTLFEGIER-------------------------------- 87 (426)
T ss_pred -CCC-------------------------ccC-----CCCCHHHHHHH--------------------------------
Confidence 000 000 00000111111
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
. .......++++.+......+..++++|+|++.++-.. .. .....++...
T Consensus 88 ---------------------------~-~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~-~~-~~~~~~~a~~ 137 (426)
T PRK09230 88 ---------------------------W-AERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDV-SD-PTLTALKAML 137 (426)
T ss_pred ---------------------------H-HHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEecccc-CC-cchhHHHHHH
Confidence 0 0011235668889999999999999999999987421 11 1112233344
Q ss_pred HHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+..+..+....++++........+.+...+..........+ ++ + ...+.++. ...+
T Consensus 138 ~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~~~--------~v-----g---~~p~~~~~--------~~~~ 193 (426)
T PRK09230 138 EVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLGAD--------VV-----G---AIPHFEFT--------REYG 193 (426)
T ss_pred HHHHHhhCcceEEEEeccCccccCCccHHHHHHHHHHcCCC--------EE-----e---CCCCcccc--------chhH
Confidence 44444544455555544322111111112222211111101 00 0 01111111 0135
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHHHHHHhcCCCCCCceEeeccCC-------ChhhHHHHhhCCcEE
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-------ASGTAARFGDQGIVA 436 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~-------~~~~~~~~~~~~i~~ 436 (579)
++.+..++++|+++|+++++|+.+... .........+.....+ .+.+..+.||.++ ++++++++++.|+.+
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~v 272 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINF 272 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 788999999999999999999984322 2222233344444556 4678999999999 578999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC------CCHHHHHHHHHcccCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD------INPLCAIRTAMKRIPPGWDNAWIP 510 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
++||.++...+.... ...+. ....|++.|.++|+++++|||+..++ .++++.++.+......
T Consensus 273 v~cP~sn~~l~~~~~---~~p~~-~g~~pi~~l~~aGv~V~lGTD~~~d~~~~~~~~d~~~~~~~~~~~~~~-------- 340 (426)
T PRK09230 273 VANPLVNIHLQGRFD---TYPKR-RGITRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMGLHVCQL-------- 340 (426)
T ss_pred EECcchhhhhcCCCC---CCCCC-CCCcCHHHHHHCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHHhh--------
Confidence 999999863221000 00111 44668999999999999999976443 4666666654321110
Q ss_pred CCCC-CHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CCCChhhccCCeEEEEEECCEEeCC
Q 008063 511 SERI-SLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 511 ~~~l-s~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
... +++++|+|+|.|||+.||+++ .| |++||.||||+++.+ +.+.+. ....+..|+++|++|+.
T Consensus 341 -~~~~~~~~~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~~--~~~~~~~v~~~G~~v~~ 406 (426)
T PRK09230 341 -MGYGQINDGLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAENGFDAVR--RQVPVRYSIRHGKVIAE 406 (426)
T ss_pred -CChhhHHHHHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHh--ccCCceEEEECCEEEec
Confidence 001 468999999999999999987 78 999999999999964 322211 13478999999999974
No 30
>PRK05985 cytosine deaminase; Provisional
Probab=100.00 E-value=1.4e-31 Score=279.70 Aligned_cols=371 Identities=19% Similarity=0.151 Sum_probs=230.5
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++. ..+|+|+||+|++|++..+. +++.++||++|++|+|||||+|+|+............
T Consensus 2 ~~~~i~~~~i~~~~-----~~~v~i~~g~i~~i~~~~~~----~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~ 72 (391)
T PRK05985 2 TDLLFRNVRPAGGA-----AVDILIRDGRIAAIGPALAA----PPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPN 72 (391)
T ss_pred CCEEEECcEECCCC-----eeEEEEECCEEEEecCCCCC----CCCCcEEECCCCEEecceEeeEEccCccccCCccccC
Confidence 46899999999864 34899999999999986432 1356799999999999999999998543210000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
....
T Consensus 73 ~~~~---------------------------------------------------------------------------- 76 (391)
T PRK05985 73 EPGP---------------------------------------------------------------------------- 76 (391)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.+.+... ... .....+..+........++.++++|+|++.++....++.. ...++...
T Consensus 77 -------------------~~~~~i~-~~~-~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~-~~~~~~~~ 134 (391)
T PRK05985 77 -------------------SLRERIA-NER-RRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAG-LRHLEAVL 134 (391)
T ss_pred -------------------CHHHHHH-HHH-HhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcc-cchHHHHH
Confidence 0011000 000 0112344677788888999999999999988753322221 12344444
Q ss_pred HHHHHHhhcCCCeeEEEEccCccchh--hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETWS--SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..+.. ...+.+.+..+....... ...+..........+ + .++ + .|+ ....
T Consensus 135 ~~~~~~--~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~------~-------~gg----~-~p~-------~~~~ 187 (391)
T PRK05985 135 AARETL--RGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGAD------V-------VGG----L-DPA-------GIDG 187 (391)
T ss_pred HHHHHh--hCcccEEEEeccCccccCCcCHHHHHHHHHHcCCC------E-------EeC----C-CCC-------CcCC
Confidence 443332 234555555443322211 112222211111100 0 000 0 111 1122
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecc--hHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC---h----hhHHHHhhCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIG--DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA---S----GTAARFGDQG 433 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~---~----~~~~~~~~~~ 433 (579)
.+++.+.++++.|+++|+++++|+.. +.......+.++... ..+.. .+..+.|+..+. + +.++++++.+
T Consensus 188 ~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~-~~g~~-~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 188 DPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTR-ALGMQ-GRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHH-HhCCC-CCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 56789999999999999999999873 333333333443332 33433 378999998653 3 5578999999
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
+.+++++... ...++++.+.+.|+++++|||++.+ ..+++..+..+......
T Consensus 266 ~~v~~~~~~~-----------------~~~~~~~~l~~~Gv~v~lGtD~~~~~~~p~~~~~~~~~~~~~~~~~~~----- 323 (391)
T PRK05985 266 VAIMTNAPGS-----------------VPVPPVAALRAAGVTVFGGNDGIRDTWWPYGNGDMLERAMLIGYRSGF----- 323 (391)
T ss_pred CeEEEeCCCC-----------------CCCCCHHHHHHCCCeEEEecCCCCCCCcCCCCCcHHHHHHHHHHHHcc-----
Confidence 9998885431 4566899999999999999997543 35667665544321110
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
...-+++++|+++|.|||+.+|+++ ++|++||.||||++|.+++.+... ....+..||++|++||.
T Consensus 324 ---~~~~~~~~al~~~T~~~A~~lg~~~--~~l~~G~~ADlvvld~~~~~~~~~-~~~~~~~v~~~G~~v~~ 389 (391)
T PRK05985 324 ---RTDDELAAALDCVTHGGARALGLED--YGLAVGARADFVLVDAETVAEAVV-AVPVRRLVVRGGRIVAR 389 (391)
T ss_pred ---CChHHHHHHHHHHcchhHHHhCCcc--cCCCCCCcCCEEEECCCCHHHHHh-hCCcceEEEECCEEEec
Confidence 0112468999999999999999986 469999999999999998652111 13356779999999984
No 31
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=100.00 E-value=6.1e-32 Score=286.56 Aligned_cols=200 Identities=22% Similarity=0.220 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHH----HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYK----SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~----~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.++++.++++.+ ++++|+++++|+.+. .+.....+.+. +.....+..+.+..+.||.++++++++++++.|+.+
T Consensus 212 ~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v 290 (455)
T TIGR02022 212 AVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVA 290 (455)
T ss_pred cCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeE
Confidence 378999999999 889999999999743 44444433221 345566778889999999999999999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccC--CCCCCCC-CCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIP--PGWDNAW-IPSER 513 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 513 (579)
++||.++. .++ ...+|++.|+++|+++++|||+. ...+++..|+.+..... ......+ .....
T Consensus 291 ~~~P~sn~--------~lg-----~g~~pi~~l~~~Gv~v~lGTD~~-~~~d~~~~m~~a~~~~~~~~~~~~~~~~~~~~ 356 (455)
T TIGR02022 291 GLCPTTEA--------NLG-----DGIFPAVDFVAAGGRFGIGSDSH-VVIDVAEELRQLEYGQRLRDRARNVLAAGPGP 356 (455)
T ss_pred EEChhhhc--------ccc-----CCCCCHHHHHHCCCeEEEECCCC-CCCCHHHHHHHHHHHHHHHhcccccccCCccc
Confidence 99999875 333 45669999999999999999963 35688888887743211 0000111 12235
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CCC-C------hhhc----cCCeEEEEEECCEEeC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SWE-D------FAAE----VSASIEATYVSGVQAY 578 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~~-~------~~~~----~~~~v~~v~v~G~~v~ 578 (579)
++.+++|+|+|.|+|++||++ +|+|++||.|||||+|.+ |.. + ...+ ...+|..|||+|++|+
T Consensus 357 ~~~~~~l~~aT~~gAralg~~--~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~~lv~~~~~~~V~~v~V~G~~v~ 431 (455)
T TIGR02022 357 SVGRALYDAALLGGAQALGLA--TGGLRAGARADFLTLDGDHPYLAGALGDSLLDRWLFAGGGAAVRDVWVGGRWVV 431 (455)
T ss_pred chHHHHHHHHHHHHHHHhCCC--CCccCCCCCcCEEEEeCCCcccCCCCchhHHHHHhhcCCCCCccEEEECCEEEE
Confidence 788999999999999999994 899999999999999977 321 1 1111 1468999999999986
No 32
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=100.00 E-value=3e-32 Score=284.04 Aligned_cols=183 Identities=22% Similarity=0.227 Sum_probs=141.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+.++++++.|++.|+++.+|+.+...... .+.+. ..+ +..+.|+.++++++++++++.|+.+++||.+
T Consensus 194 ~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~----~~~~~-~~g----~~~~~H~~~~~~~~l~~la~~g~~~~~~P~~ 264 (377)
T TIGR01224 194 FSVEQSRRILQAAQEAGLPVKLHAEELSNLGG----AELAA-KLG----AVSADHLEHASDAGIKALAEAGTVAVLLPGT 264 (377)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEecCCCCCCH----HHHHH-HcC----CCccHHHhcCCHHHHHHHHhcCCEEEECchH
Confidence 46789999999999999999999975421111 11111 122 4568899999999999999999999999998
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIA 522 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~ 522 (579)
+.. ++ ...+|++.+.++|+++++|||... ..+++..+...+.... ...++++++++++
T Consensus 265 ~~~--------l~-----~~~~p~~~l~~~Gv~v~lgTD~~~-~~~~~~~~~~~~~~~~--------~~~~ls~~eal~~ 322 (377)
T TIGR01224 265 TFY--------LR-----ETYPPARQLIDYGVPVALATDLNP-GSSPTLSMQLIMSLAC--------RLMKMTPEEALHA 322 (377)
T ss_pred HHh--------cC-----CcCccHHHHHHCCCCEEEECCCCC-CCChhHHHHHHHHHHH--------HhcCCCHHHHHHH
Confidence 752 22 345689999999999999999632 1455555554443211 2346999999999
Q ss_pred HcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEE
Q 008063 523 HTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQ 576 (579)
Q Consensus 523 ~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~ 576 (579)
+|.|||+.+|+++.+|+|++||.|||||+|.+++. .+......+|..||++||+
T Consensus 323 ~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 323 ATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIPYHYGVNHVHAVIKNGNI 377 (377)
T ss_pred HHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhhhhcCCCCceEEEECCCC
Confidence 99999999999988999999999999999999876 3333335689999999984
No 33
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=100.00 E-value=1.8e-31 Score=276.05 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHH----------------------HHHHHhcCCCCCCceEeecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMY----------------------KSVVVTTGKRDQRFRIEHAQ 419 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~----------------------~~~~~~~~~~~~~~~i~H~~ 419 (579)
++++.++++.+.|+++++++++|+.+.. +.....+.. -+.....|..+.+..+.||.
T Consensus 160 ~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~~ 239 (381)
T cd01312 160 VHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCV 239 (381)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEECC
Confidence 7889999999999999999999998553 333222110 12345567788899999999
Q ss_pred CCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHH
Q 008063 420 HLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAM 497 (579)
Q Consensus 420 ~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~ 497 (579)
++++++++++++.|+.+++||.++. +++ ...+|++.++++|+++++|||+..+ ..+++.+|+.+.
T Consensus 240 ~l~~~~~~~l~~~g~~v~~~P~sn~--------~lg-----~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~~~ 306 (381)
T cd01312 240 YANLEEAEILASRGASIALCPRSNR--------LLN-----GGKLDVSELKKAGIPVSLGTDGLSSNISLSLLDELRALL 306 (381)
T ss_pred cCCHHHHHHHHHcCCeEEECcchhh--------hhc-----CCCcCHHHHHHCCCcEEEeCCCCccCCCCCHHHHHHHHH
Confidence 9999999999999999999998864 333 3456899999999999999997643 368999998876
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chhhc--cCCeEEEEE
Q 008063 498 KRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFAAE--VSASIEATY 571 (579)
Q Consensus 498 ~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~~~--~~~~v~~v~ 571 (579)
..... ....++++++|+|+|.|+|+.||++ +|+|++||.||||++|.+... ++..+ ....|.+||
T Consensus 307 ~~~~~-------~~~~~~~~~~l~~aT~~gA~alg~~--~Gsle~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~~~v~~v~ 377 (381)
T cd01312 307 DLHPE-------EDLLELASELLLMATLGGARALGLN--NGEIEAGKRADFAVFELPGPGIKEQAPLQFILHAKEVRHLF 377 (381)
T ss_pred Hhccc-------ccccCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcccEEEEeCCCcCCCCccHHHHHHccCCCCEEE
Confidence 53211 1113689999999999999999997 899999999999999976421 11111 256899999
Q ss_pred ECCE
Q 008063 572 VSGV 575 (579)
Q Consensus 572 v~G~ 575 (579)
|+||
T Consensus 378 v~G~ 381 (381)
T cd01312 378 ISGK 381 (381)
T ss_pred ecCC
Confidence 9996
No 34
>PRK14085 imidazolonepropionase; Provisional
Probab=100.00 E-value=8.1e-32 Score=280.27 Aligned_cols=350 Identities=22% Similarity=0.283 Sum_probs=217.1
Q ss_pred ccEEEEc-CeEEeCCCC-------CCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccC
Q 008063 45 ADLVVTN-GVIFTGDDS-------LLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGG 116 (579)
Q Consensus 45 ~~~likn-~~v~~~~~~-------~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~ 116 (579)
|+++|+| +.|++++.. ..++++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+....
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~----~~~~~~iD~~g~~v~PGlId~H~Hl~~~~ 76 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADA----PAADERVDAGGRAVLPGFVDSHSHLVFAG 76 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccC----CCCCeEEeCCCCEEecCeEecCcCccccC
Confidence 5789999 599998643 34778999999999999986432 24568999999999999999999985432
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHH
Q 008063 117 LQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVAL 196 (579)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~ 196 (579)
.+. .++..++ .+..|
T Consensus 77 ~r~-----------~~~~~~~-------------~~~~~----------------------------------------- 91 (382)
T PRK14085 77 DRS-----------AEFAARM-------------AGEPY----------------------------------------- 91 (382)
T ss_pred Chh-----------HHHHhhh-------------cCCCc-----------------------------------------
Confidence 110 0000000 00000
Q ss_pred HHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCcc
Q 008063 197 QLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESV 276 (579)
Q Consensus 197 ~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~ 276 (579)
+.+ .... .......++++++.......+..++++|+|++.+.+.+ +..
T Consensus 92 -----------~~~-----------------~i~~-~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~--~~~- 139 (382)
T PRK14085 92 -----------SAG-----------------GIRT-TVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGY--GLT- 139 (382)
T ss_pred -----------cCC-----------------ChHH-HHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcC--CCC-
Confidence 000 0000 01112345678899999999999999999999997532 211
Q ss_pred ccchHHHHHHHHHHhhcC-CC-eeEEEEccCc--cchhhHHHHHHhc-CCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 277 QLSWEDFADVYQWASYSE-KM-KIRVCLFFPL--ETWSSLADLINKT-GHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~-~i~v~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
.....+..+...... .. ........+. .+.....+..... ......+ ...+|++.++.
T Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~idi~~~~~------------ 202 (382)
T PRK14085 140 ---VEDEARSARIAAEFTDEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAPH--ARWIDVFCERG------------ 202 (382)
T ss_pred ---HHHHHHHHHHHHHhhhcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHHh--CCeEEEEecCC------------
Confidence 122222222111110 00 0111111111 0011111111000 0000000 11233333321
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHH
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAAR 428 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~ 428 (579)
..+++.++++++.|++.|+++.+|+.+.. .++..++ .| ...+.|+.+++++++++
T Consensus 203 ----------~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~--------~g----~~~i~H~~~l~~~~~~~ 260 (382)
T PRK14085 203 ----------AFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVE--------LG----AASVDHCTYLTDADVDA 260 (382)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHH--------cC----CCcHHHhCCCCHHHHHH
Confidence 15789999999999999999999997532 2332221 23 45689999999999999
Q ss_pred HhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCC
Q 008063 429 FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 429 ~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+++.|+.+++||.++.. .+ ...++++.+.+.|+++++|||++... .....+...+....
T Consensus 261 la~~gv~~~~~P~~~~~--------~~-----~~~~~~~~l~~aGv~v~lgsD~~~~~-~~~~~~~~~~~~~~------- 319 (382)
T PRK14085 261 LAGSGTVATLLPGAEFS--------TR-----QPYPDARRLLDAGVTVALASDCNPGS-SYTSSMPFCVALAV------- 319 (382)
T ss_pred HHHcCCEEEECcHHHHh--------cC-----CCCchHHHHHHCCCcEEEEeCCCCCC-ChHHHHHHHHHHHH-------
Confidence 99999999999997642 11 33568999999999999999974221 11122222221110
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
...+++++++++++|.|||+.||+++ +|+|++||.|||||+|.+...
T Consensus 320 -~~~~l~~~~al~~aT~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~~~ 366 (382)
T PRK14085 320 -RQMGMTPAEAVWAATAGGARALRRDD-VGVLAVGARADLHVLDAPSHL 366 (382)
T ss_pred -HhcCCCHHHHHHHHHHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCCc
Confidence 23468999999999999999999985 899999999999999988744
No 35
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=7.1e-31 Score=280.47 Aligned_cols=363 Identities=18% Similarity=0.204 Sum_probs=227.1
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.+++|+|++|+++.+. ..++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+..+...
T Consensus 4 ~~~lli~~~~v~~~~~~--~~~~i~I~~g~I~~i~~~~~~----~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~----- 72 (486)
T PLN02942 4 STKILIKGGTVVNAHHQ--ELADVYVEDGIIVAVAPNLKV----PDDVRVIDATGKFVMPGGIDPHTHLAMPFMG----- 72 (486)
T ss_pred CCcEEEECcEEEcCCCC--eEeEEEEECCEEEEEcCCCCC----CCCCeEEECCCCEEecCEeeeeeccCcccCC-----
Confidence 45689999999986543 567999999999999875321 1356899999999999999999998543100
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
.
T Consensus 73 ----------------------------------------~--------------------------------------- 73 (486)
T PLN02942 73 ----------------------------------------T--------------------------------------- 73 (486)
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+..+.+.+++.|+|++.|+.. +. .......
T Consensus 74 ----------------------------------------~~~ed~~s~s~aAl~gGvTTv~D~~~--~~---~~~~~~~ 108 (486)
T PLN02942 74 ----------------------------------------ETIDDFFSGQAAALAGGTTMHIDFVI--PV---NGNLLAG 108 (486)
T ss_pred ----------------------------------------cccchHHHHHHHHHcCCCeEEEeCCC--CC---CCCHHHH
Confidence 00123344667789999999999732 11 1122233
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccch-----hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETW-----SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
.+.+........ +++......... .+..++.... ...+++++..- ..+
T Consensus 109 ~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~e~~~l~~~~--------gv~~~k~~~~~---------~~~-------- 161 (486)
T PLN02942 109 YEAYEKKAEKSC--MDYGFHMAITKWDDTVSRDMETLVKEK--------GINSFKFFMAY---------KGS-------- 161 (486)
T ss_pred HHHHHHHHhhcC--CCEEEEEEecCCcHhHHHHHHHHHHhC--------CCceEEEEEec---------CCC--------
Confidence 333332222222 333332221111 1111221110 11235554310 001
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCce
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFR 414 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 414 (579)
...+++.+.+.++.+++.|.++++|+......+...+.+ +......+..+.+.+
T Consensus 162 --~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~ 239 (486)
T PLN02942 162 --LMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLY 239 (486)
T ss_pred --CCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEE
Confidence 125788999999999999999999975433222222111 111111233467899
Q ss_pred EeeccCCCh-hhHHHHhhCCc--EEEecccccccchhHHHH----------hhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 415 IEHAQHLAS-GTAARFGDQGI--VASMQPQHLLDDADSARK----------KLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 415 i~H~~~~~~-~~~~~~~~~~i--~~~~~p~~~~~~~~~~~~----------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
+.|+..... ++++.+++.|+ +...+|++...+.+.+.+ ..+|.|.+.....+..++++|+++++|||
T Consensus 240 i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTD 319 (486)
T PLN02942 240 VVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTD 319 (486)
T ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECC
Confidence 999999888 89999998885 445666666544443321 22444444555567899999999999999
Q ss_pred CCCCCCC-------HHH-----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 482 WPVADIN-------PLC-----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 482 ~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
.+..+.+ .|. .+..++.+. .....++++++++++|.|||+++|+++++|+|++|
T Consensus 320 h~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~--------~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G 391 (486)
T PLN02942 320 HCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTM--------VESGQISPTDYVRVTSTECAKIFNIYPRKGAILAG 391 (486)
T ss_pred CCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCC
Confidence 7644311 111 111111110 02335999999999999999999997778999999
Q ss_pred CcccEEEeCCCCCC--Chhhc-----------c--CCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTSSWE--DFAAE-----------V--SASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~~~~--~~~~~-----------~--~~~v~~v~v~G~~v~ 578 (579)
+.||||++|.++.. +...+ . ..+|..||++|++||
T Consensus 392 ~~ADlv~vd~~~~~~v~~~~~~s~~~~~py~g~~l~g~v~~tiv~G~~v~ 441 (486)
T PLN02942 392 SDADIIILNPNSTFTISAKTHHSRIDTNVYEGRRGKGKVEVTISQGRVVW 441 (486)
T ss_pred CcCCEEEEcCCccEEEcHHHccccCCCCCccCcEeeeeEEEEEECCEEEE
Confidence 99999999987643 11111 0 568999999999987
No 36
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=9.1e-31 Score=274.77 Aligned_cols=197 Identities=16% Similarity=0.134 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccC---CChhhHHHHhh-CCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQH---LASGTAARFGD-QGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~---~~~~~~~~~~~-~~i~ 435 (579)
.+++.+.+.++.|+++++++.+|+..- ..++.+++.+ .+...+..|... .+..++-++.. .++-
T Consensus 229 ~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~g~vE~~~aa~---------~grpih~~H~~Gaggghapd~~~~~~~~~~~ 299 (572)
T PRK13309 229 ATAAALRHALRVADEVDIQVAVHTDSLNECGYVEDTIDAF---------EGRTIHTFHTEGAGGGHAPDIIKVASQTNVL 299 (572)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEeCCccccchhHHHHHHHh---------CCCceeeeeccCcccCCchhHHHhcCCCCcc
Confidence 478899999999999999999997522 3333332222 223445555432 22233333332 2332
Q ss_pred EE-e-----------------------cccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC---CCCC
Q 008063 436 AS-M-----------------------QPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV---ADIN 488 (579)
Q Consensus 436 ~~-~-----------------------~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~---~~~~ 488 (579)
.+ + ......++..+..++++++ ..++++.|++.|+++++|||++. .+.+
T Consensus 300 ~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e----~~~a~~~l~daGa~~~~gSD~pv~gr~~~~ 375 (572)
T PRK13309 300 PSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAFAESRVRPE----TIAAENVLHDMGVISMFSSDSQAMGRVGEN 375 (572)
T ss_pred cCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhHHHHhhCch----hhcchhHHHhCCCEEEEcCCCCcccCCccc
Confidence 22 1 1111224455556667764 45789999999999999999987 4688
Q ss_pred HHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 489 PLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 489 ~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
++..++.++.|....+. ........++..++|+++|.|||+++|+++.+|+|++||.|||||||.++|. .+
T Consensus 376 p~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f~-------~~ 448 (572)
T PRK13309 376 WLRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFFG-------AK 448 (572)
T ss_pred HHHHHHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhcC-------CC
Confidence 99999999876432111 1112245689999999999999999999999999999999999999998875 25
Q ss_pred EEEEEECCEEeCC
Q 008063 567 IEATYVSGVQAYP 579 (579)
Q Consensus 567 v~~v~v~G~~v~~ 579 (579)
+..||++|++||.
T Consensus 449 ~~~vi~~G~iv~~ 461 (572)
T PRK13309 449 PKMVIKGGMINWA 461 (572)
T ss_pred ccEEEECCEEEEe
Confidence 7899999999983
No 37
>PRK07583 cytosine deaminase-like protein; Validated
Probab=100.00 E-value=1.2e-30 Score=275.89 Aligned_cols=387 Identities=19% Similarity=0.218 Sum_probs=238.7
Q ss_pred CCccEEEEcCeEEeCCC----------CCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccc
Q 008063 43 LEADLVVTNGVIFTGDD----------SLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHF 112 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~----------~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~ 112 (579)
.++.++|+|+++-+... ......+|.|+||||++|++..+. +.+.++||++|++|+|||||+|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~----~~~~~~id~~g~~v~Pg~id~H~Hl 84 (438)
T PRK07583 9 ESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGA----PDELPAVDLKGRMVWPCFVDMHTHL 84 (438)
T ss_pred CCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCC----CCCCceecCCCCcccCCcccceecc
Confidence 45679999999755421 112456999999999999986431 1357899999999999999999998
Q ss_pred cccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhc
Q 008063 113 IPGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLAN 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n 192 (579)
........ .. ....+..+..+.+.
T Consensus 85 d~~~~~~~-~~-~~~~~~~~~~~~~~------------------------------------------------------ 108 (438)
T PRK07583 85 DKGHIWPR-SP-NPDGTFPGALDAVT------------------------------------------------------ 108 (438)
T ss_pred ccceecCC-CC-CCCCCHHHHHHHHH------------------------------------------------------
Confidence 44311000 00 00000111100000
Q ss_pred HHHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC
Q 008063 193 SVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP 272 (579)
Q Consensus 193 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~ 272 (579)
.......+.+++.+.+..+.+.+...|+|++..+-..++
T Consensus 109 -----------------------------------------~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~ 147 (438)
T PRK07583 109 -----------------------------------------ADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFA 147 (438)
T ss_pred -----------------------------------------HHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCC
Confidence 011123345777888999999999999997766432111
Q ss_pred CCccccchHHHHHHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCC
Q 008063 273 GESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (579)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~ 350 (579)
... ...++...+..+.. ...+...++...+... .+...+..+.... .+|+. ++ . +
T Consensus 148 ~~~-~~~~~~i~~~~~~~--~~~~~~~~v~~~p~~~~~~~~~~eL~~~v~~-------~~gv~-------g~---~---~ 204 (438)
T PRK07583 148 PQA-AISWEVFAELREAW--AGRIALQAVSLVPLDAYLTDAGERLADLVAE-------AGGLL-------GG---V---T 204 (438)
T ss_pred CCc-ccHHHHHHHHHHHh--hccCeEEEEEecChhhccCchHHHHHHHHHH-------cCCEE-------eC---C---C
Confidence 111 11222222333322 2233444443222111 0111111111000 00110 00 0 0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-------
Q 008063 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA------- 422 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~------- 422 (579)
+.. . -..+.+.++++.|+++|+++.+|+.+. ......++.+.+.....+. ..+..+.|+..+.
T Consensus 205 ~~~-~-------~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~-~~~v~i~H~~~l~~~~~~~~ 275 (438)
T PRK07583 205 YMN-P-------DLDAQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGF-EGKVTCGHCCSLAVQPEEQA 275 (438)
T ss_pred CCC-C-------CHHHHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCC-CCCEEEEeccchhcCCHHHH
Confidence 100 0 145789999999999999999999633 2223334444444444554 3479999999876
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHH
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTA 496 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~ 496 (579)
+++++++++.|+.+++||.++.......... ..+. +...+++.+.++|+++++|||+..+ ..++++.+..+
T Consensus 276 ~~~i~~la~~gv~vv~~P~~~~~l~~~~~~~--~p~~-~~~~~v~~l~~aGV~valGtD~~~d~~~p~g~~~~~~~~~~a 352 (438)
T PRK07583 276 QATIALVAEAGIAIVSLPMCNLYLQDRQPGR--TPRW-RGVTLVHELKAAGIPVAVASDNCRDPFYAYGDHDMLEVFREA 352 (438)
T ss_pred HHHHHHHHHcCCeEEECcchhhhhcCCCcCC--CCCC-CCcchHHHHHHCCCeEEEEeCCCCCCCCCCCCcCHHHHHHHH
Confidence 4789999999999999999875322111000 1122 4567899999999999999997432 25677777766
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCCh-hhccCCeEEEEEECCE
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF-AAEVSASIEATYVSGV 575 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~-~~~~~~~v~~v~v~G~ 575 (579)
+... ..+.+++++|+++|.|||+.+|+++ +|+|++|+.|||||+|.+++.+. .. ...+..||++|+
T Consensus 353 ~~~~----------~~~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~~--~~~~~~V~~~G~ 419 (438)
T PRK07583 353 VRIL----------HLDHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELLSR--PQSDRIVLRAGK 419 (438)
T ss_pred HHHH----------hcCCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHHhc--CCCccEEEECCE
Confidence 5321 1246899999999999999999987 89999999999999999997643 22 236778999999
Q ss_pred EeC
Q 008063 576 QAY 578 (579)
Q Consensus 576 ~v~ 578 (579)
+|.
T Consensus 420 ~v~ 422 (438)
T PRK07583 420 PID 422 (438)
T ss_pred Eec
Confidence 885
No 38
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.98 E-value=1e-30 Score=272.09 Aligned_cols=273 Identities=23% Similarity=0.264 Sum_probs=179.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEc--cCccc-h---hh-
Q 008063 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLF--FPLET-W---SS- 311 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--~~~~~-~---~~- 311 (579)
.+++++++......+..++++|+|++.+...+ +..+. ......+..+++.....+.+..+.. ...+. . +.
T Consensus 84 ~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~--~~~~~-~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 84 AASEDELFASALRRLARMLRHGTTTVEVKSGY--GLDLE-TELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred hCCHHHHHHHHHHHHHHHHHCCceEEEecccC--CCCHH-HHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 45678899999999999999999999884211 11111 1122334444444433444444332 11111 0 11
Q ss_pred ----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEec
Q 008063 312 ----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI 387 (579)
Q Consensus 312 ----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~ 387 (579)
..+....... .. ...+++++..+ ...+.+.++++++.|+++|+++.+|+.
T Consensus 161 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~----------------------~~~~~~~~~~~~~~A~~~g~~v~~H~~ 214 (371)
T cd01296 161 IDLVIEEVLPAVAE--EN--LADFCDVFCEK----------------------GAFSLEQSRRILEAAKEAGLPVKIHAD 214 (371)
T ss_pred HHHHHHHHHHHHHH--hC--CCCEEEEeecC----------------------CccCHHHHHHHHHHHHHCCCeEEEEEc
Confidence 0111111000 00 01223332111 114578999999999999999999997
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHH
Q 008063 388 GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQ 467 (579)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~ 467 (579)
+....... +.. ...+ ...+.|+..+++++++++++.|+.+++||.++.. ++ ...++++
T Consensus 215 e~~~~~~~----~~~-~~~g----~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~--------l~-----~~~~~~~ 272 (371)
T cd01296 215 ELSNIGGA----ELA-AELG----ALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFS--------LR-----ETYPPAR 272 (371)
T ss_pred CcCCCCHH----HHH-HHcC----CCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHH--------hC-----CCCCCHH
Confidence 54211111 111 1122 4578999999999999999999999999998652 22 2256889
Q ss_pred HHHHCCCeeeecCCC-CCCCC--CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 468 SLLANNALLALGSDW-PVADI--NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 468 ~l~~~Gi~v~~gsD~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
.++++|+++++|||+ +.... +++..++.++. ..+++++++++++|.|||+.+|+++++|+|++||
T Consensus 273 ~l~~~Gv~v~lgsD~~p~~~~~~~l~~~~~~~~~------------~~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~G~ 340 (371)
T cd01296 273 KLIDAGVPVALGTDFNPGSSPTSSMPLVMHLACR------------LMRMTPEEALTAATINAAAALGLGETVGSLEVGK 340 (371)
T ss_pred HHHHCCCcEEEecCCCCCCChHHHHHHHHHHHHH------------hcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCC
Confidence 999999999999996 33221 24445554442 2358999999999999999999998899999999
Q ss_pred cccEEEeCCCCCCC-hhhccCCeEEEEEECC
Q 008063 545 IADFVILSTSSWED-FAAEVSASIEATYVSG 574 (579)
Q Consensus 545 ~ADlvvld~~~~~~-~~~~~~~~v~~v~v~G 574 (579)
.|||||+|.+++.. +.......|..||++|
T Consensus 341 ~ADlvv~d~~~~~~~~~~~~~~~v~~v~~~G 371 (371)
T cd01296 341 QADLVILDAPSYEHLAYRFGVNLVEYVIKNG 371 (371)
T ss_pred CcCEEEECCCchHhhhhhcCCCCceEEEeCc
Confidence 99999999999773 3333455899999998
No 39
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.98 E-value=5.7e-31 Score=277.09 Aligned_cols=375 Identities=24% Similarity=0.306 Sum_probs=248.9
Q ss_pred ccEEEEcCeEEeCCCCC-CeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 45 ADLVVTNGVIFTGDDSL-LFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~-~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.++++|..++..++.. ...+++.|+||||+.|++..+.. ++.++||++|++|+|||||+|+|+.+...
T Consensus 2 ~~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~----~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~------ 71 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGP----PDEEVIDAKGKLVLPGFVNAHTHLDQTLL------ 71 (421)
T ss_pred cceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCC----CCceeecCCCCEeccCccccccchHHHHH------
Confidence 35788999888863332 35689999999999999875432 46789999999999999999999755432
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhh-hCCCCeEEEEeCCCchhhhcHHHHHHcCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDD-ITPHNPVWLSRMDGHMGLANSVALQLVGIT 202 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~-~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~ 202 (579)
.+... ..+...|+.. +++..
T Consensus 72 -~g~~~---------------------------------~~~l~~wl~~~~~~~~------------------------- 92 (421)
T COG0402 72 -RGLAD---------------------------------DLPLLEWLERYVWPRE------------------------- 92 (421)
T ss_pred -hhhhc---------------------------------ccchHHHHHHHHhHHH-------------------------
Confidence 11110 1112233333 11100
Q ss_pred CCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHH
Q 008063 203 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWED 282 (579)
Q Consensus 203 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~ 282 (579)
....++++.+.....++..++++|+|++..+... .+.
T Consensus 93 ----------------------------------~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~---------~~~ 129 (421)
T COG0402 93 ----------------------------------ARLLTEEDLYARALLALLEMLRNGTTTARTHVDV---------VAE 129 (421)
T ss_pred ----------------------------------hhcCCHHHHHHHHHHHHHHHHhcCccccccccch---------hhh
Confidence 0124568899999999999999999996665421 111
Q ss_pred H-HHHHHHHhhcCCCeeEEEEccCccc--h-------hh----HHHHHHhcCCCCCCceEEceEEEEEcCccCCCccccc
Q 008063 283 F-ADVYQWASYSEKMKIRVCLFFPLET--W-------SS----LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFH 348 (579)
Q Consensus 283 ~-~~~~~~~~~~~~~~i~v~~~~~~~~--~-------~~----~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~ 348 (579)
. ...++.+. +.++++........ + .+ ..+.+.. +.+.+...+. ...+
T Consensus 130 ~~~~~~~a~~---~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------~~p~ 190 (421)
T COG0402 130 SADAAFEAAL---EVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLRE-------AHGLGRDVVG---------LAPH 190 (421)
T ss_pred hHHHHHHHHH---HhCCeeEeeeccccCCCCcccccchHHHHHHHHHHHH-------HhcCCCeeEE---------EecC
Confidence 1 11222222 23344433221111 0 11 1122221 1111111110 0112
Q ss_pred CCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHH----HHHHHHHhcCCCCCCceEeeccCCCh
Q 008063 349 EPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLD----MYKSVVVTTGKRDQRFRIEHAQHLAS 423 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~----~~~~~~~~~~~~~~~~~i~H~~~~~~ 423 (579)
.+ ..++++.++.+.+.++++|+++++|+.+. .++....+ .........|..+.+..+.||.++++
T Consensus 191 ~~----------~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~ 260 (421)
T COG0402 191 FP----------YTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE 260 (421)
T ss_pred CC----------CCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCH
Confidence 22 23789999999999999999999999855 45555555 22223455677778999999999999
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRIP 501 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~ 501 (579)
++++++++.|+.+++||.+|. +++ ....|++++.+.|+++++|||+..+. .++|.++..+.....
T Consensus 261 ~e~~~l~~~g~~v~~cP~sN~--------~L~-----sG~~p~~~~~~~gv~v~~gTD~~~~~~~~d~l~~~~~a~~l~~ 327 (421)
T COG0402 261 EELELLAESGASVVHCPRSNL--------KLG-----SGIAPVRRLLERGVNVALGTDGAASNNVLDMLREMRTADLLQK 327 (421)
T ss_pred HHHHHHhhCCCeEEECcchhc--------ccc-----CCCCCHHHHHHcCCCEEEecCCccccChHHHHHHHHHHHHHHH
Confidence 999999999999999999997 444 44668999999999999999986554 789999888854221
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC--Chh---hc----cCCeEEEEEE
Q 008063 502 PGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE--DFA---AE----VSASIEATYV 572 (579)
Q Consensus 502 ~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~--~~~---~~----~~~~v~~v~v 572 (579)
... ......... ++++++|.|+|++||+ +++|+|++||.|||||+|.+... ... .+ ....|..||+
T Consensus 328 ~~~---~~~~~~~~~-~~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~~~~~~v~~~~~~~v~~v~~ 402 (421)
T COG0402 328 LAG---GLLAAQLPG-EALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLRPVSRLVFAAGGKDVDRVLV 402 (421)
T ss_pred hhc---CCCcccchH-HHHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCccccccHHHHHHHhcCCCceeEEEE
Confidence 110 001111222 4999999999999999 45999999999999999987632 111 11 1448999999
Q ss_pred CCEEeC
Q 008063 573 SGVQAY 578 (579)
Q Consensus 573 ~G~~v~ 578 (579)
+|+.++
T Consensus 403 ~g~~v~ 408 (421)
T COG0402 403 DGRLVM 408 (421)
T ss_pred CCEEEE
Confidence 999875
No 40
>PRK07627 dihydroorotase; Provisional
Probab=99.98 E-value=8.3e-31 Score=274.44 Aligned_cols=366 Identities=17% Similarity=0.241 Sum_probs=227.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
|+++|+|++|+++.+.....++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..++..
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~----~~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~------ 70 (425)
T PRK07627 1 MKIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAG----FNADKTIDASGLIVCPGLVDLSARLREPGYE------ 70 (425)
T ss_pred CeEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcC----CCCCeEEECCCCEEeccEEeccccccCCCcc------
Confidence 468999999999866544667999999999999874211 1456899999999999999999998543210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 71 -------------------------------------------------------------------------------- 70 (425)
T PRK07627 71 -------------------------------------------------------------------------------- 70 (425)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
.++.+....+.++..|+|++.++....+ .....+..
T Consensus 71 ----------------------------------------~~e~~~t~s~aa~~gGvTtv~~~p~~~p----~~~~~~~~ 106 (425)
T PRK07627 71 ----------------------------------------YKATLESEMAAAVAGGVTSLVCPPDTDP----VLDEPGLV 106 (425)
T ss_pred ----------------------------------------ccCcHHHHHHHHHhCCeeEEEeCCCCCC----CCCCHHHH
Confidence 0112344677899999999999853222 22233333
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc------chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE------TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
+.+..... .....+++.+.... +..+..+... .|+..+.+.
T Consensus 107 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~------------~G~~~fk~~-------------------- 153 (425)
T PRK07627 107 EMLKFRAR-NLNQAHVYPLGALTVGLKGEVLTEMVELTE------------AGCVGFSQA-------------------- 153 (425)
T ss_pred HHHHHHhh-ccCceeEEEeCeEEcCCCccCHHHHHHHHh------------CCEEEEEcC--------------------
Confidence 33333222 22244444333211 1222222211 122222110
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHH---------------------HHHHHHHHHHHhcCCCCCCceEee
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRAND---------------------LVLDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~H 417 (579)
+....+...+.+.++.+++.|.++.+|+....-.+ ....+..+...-.-..+.+.++.|
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~H 233 (425)
T PRK07627 154 NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLAR 233 (425)
T ss_pred CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEe
Confidence 01124677899999999999999999996321100 001111111111112345888999
Q ss_pred ccCCCh-hhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--
Q 008063 418 AQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-- 486 (579)
Q Consensus 418 ~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-- 486 (579)
...... +.+...++.| +++.+||++...+.+.+. +..+|.|..+....+...+++|...+++||++...
T Consensus 234 vSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~ 313 (425)
T PRK07627 234 LSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDD 313 (425)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHH
Confidence 876332 3444455555 788999999886655443 24566776677888999999999999999984322
Q ss_pred --CCHHHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CC-Chh
Q 008063 487 --INPLCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WE-DFA 560 (579)
Q Consensus 487 --~~~~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~-~~~ 560 (579)
..++.....++.+...... ..+..+.+++++++++++|.|||+.+|+. .|+|++|+.||||++|.+. +. +.+
T Consensus 314 ~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~~--~G~l~~G~~ADlvv~d~~~~~~v~~~ 391 (425)
T PRK07627 314 EKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGLP--AGRLAEGAPADLCVFDPDAHWRVEPR 391 (425)
T ss_pred HccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCCcEEEChh
Confidence 1122222221111110000 00113456999999999999999999993 6999999999999999883 43 322
Q ss_pred hcc-------------CCeEEEEEECCEEeCC
Q 008063 561 AEV-------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 561 ~~~-------------~~~v~~v~v~G~~v~~ 579 (579)
++. ..+|..||++|++||.
T Consensus 392 ~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~ 423 (425)
T PRK07627 392 ALKSQGKNTPFLGYELPGRVRATLVAGQVAFE 423 (425)
T ss_pred hccccCCCCCCcCCEeeeEEEEEEECCEEEee
Confidence 222 2589999999999873
No 41
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=99.98 E-value=6.3e-30 Score=273.26 Aligned_cols=210 Identities=18% Similarity=0.178 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~i~H~ 418 (579)
++++.+.+.++.|++++.++++|+..........+.+ +.........+.+.++.|+
T Consensus 160 ~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~ 239 (454)
T TIGR02033 160 VDDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHV 239 (454)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6889999999999999999999985433332222211 1111111234567889998
Q ss_pred cCC-ChhhHHHHhhCC--cEEEecccccccchhHHHH---hh------ChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHL-ASGTAARFGDQG--IVASMQPQHLLDDADSARK---KL------GVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~-~~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~---~l------~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
... +.++++.+++.| +++.+||+++..+.+.+.. .. +|.|.......+..+++.|+.+++|||+....
T Consensus 240 s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~ 319 (454)
T TIGR02033 240 STASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFN 319 (454)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCC
Confidence 773 356777788888 6688999998766555431 11 23333334444779999999999999975443
Q ss_pred CC--------HHH---------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEE
Q 008063 487 IN--------PLC---------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFV 549 (579)
Q Consensus 487 ~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlv 549 (579)
.. .+. ++.....-. ....+..++++++++++|.|||++||+++++|+|++|+.||||
T Consensus 320 ~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~------~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~ 393 (454)
T TIGR02033 320 FAQKKAIGKDDFTKIPNGGPGVEERMTLLFD------EGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIV 393 (454)
T ss_pred HHHhhhcccCCHhhCCCCCchHHhHHHHHHH------HHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEE
Confidence 11 111 111110000 0002345899999999999999999997668999999999999
Q ss_pred EeCCCCCC--C------------hhhc-cCCeEEEEEECCEEeC
Q 008063 550 ILSTSSWE--D------------FAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 550 vld~~~~~--~------------~~~~-~~~~v~~v~v~G~~v~ 578 (579)
|+|.+... + +... ...+|..||++|++||
T Consensus 394 i~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~ 437 (454)
T TIGR02033 394 IWDPNRTTVISAETHHDNADYNPFEGFKVQGAVVSVLSRGRVVV 437 (454)
T ss_pred EEcCCcCeeechHHhhccCCCCcccCeEEeeeEEEEEECCEEEE
Confidence 99976421 1 1111 1458999999999987
No 42
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=99.98 E-value=9e-30 Score=271.15 Aligned_cols=208 Identities=18% Similarity=0.142 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHH------------------------HHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMY------------------------KSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~i~H~ 418 (579)
++++.++++++.+++.|+++++|+.....++...+.+ ..........+.+.++.|+
T Consensus 159 ~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~ 238 (447)
T cd01314 159 VDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHV 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6899999999999999999999985444333332211 0111112234668889998
Q ss_pred cCCCh-hhHHHHhhCCc--EEEecccccccchhHHH---------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHLAS-GTAARFGDQGI--VASMQPQHLLDDADSAR---------KKLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~~i--~~~~~p~~~~~~~~~~~---------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
..... +.++.+++.|+ .+.+||+++....+.+. +..++.|......++..++++|+++.+|||++...
T Consensus 239 s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~ 318 (447)
T cd01314 239 SSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN 318 (447)
T ss_pred CCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 86443 35777777775 55799999775555441 11244444355667889999999999999986543
Q ss_pred C--CHH-----H---------HHHHH--HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 487 I--NPL-----C---------AIRTA--MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 487 ~--~~~-----~---------~~~~~--~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
. +.+ . +++.. +.+. .....++++++++++|.|||++||+.+++|+|++|+.|||
T Consensus 319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~--------~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~ 390 (447)
T cd01314 319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEG--------VAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADL 390 (447)
T ss_pred HHHhhcccCCHhhCCCCCchHhhhHHHHHHHH--------HHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCE
Confidence 1 111 0 11111 1110 0234599999999999999999999777899999999999
Q ss_pred EEeCCCC-CC-------------Chhhcc-CCeEEEEEECCEEeC
Q 008063 549 VILSTSS-WE-------------DFAAEV-SASIEATYVSGVQAY 578 (579)
Q Consensus 549 vvld~~~-~~-------------~~~~~~-~~~v~~v~v~G~~v~ 578 (579)
||+|.+. +. ++.... ..+|..||++|++||
T Consensus 391 vi~d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~ 435 (447)
T cd01314 391 VIWDPNAEKTISADTHHHNVDYNIFEGMKVKGWPVVTISRGKVVV 435 (447)
T ss_pred EEEeCCcCEEecHHHhhccCCCCcccCeEEeeeEEEEEECCEEEE
Confidence 9999763 21 122211 458999999999987
No 43
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=99.97 E-value=4.4e-30 Score=268.04 Aligned_cols=346 Identities=19% Similarity=0.197 Sum_probs=223.0
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
...+++|+|++|+|+.+. ...+|.|+||||++|++...... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 69 ~~~DlVI~Na~IiD~~gi--~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~ 146 (573)
T PRK13206 69 GAPDTVITGAVILDHWGI--VKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFIC 146 (573)
T ss_pred CCCCEEEECeEEECCCCe--EEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCC
Confidence 457899999999987653 56799999999999997431100 00235689999999999999999999743
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
++
T Consensus 147 Pg------------------------------------------------------------------------------ 148 (573)
T PRK13206 147 PQ------------------------------------------------------------------------------ 148 (573)
T ss_pred ch------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGE 274 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~ 274 (579)
..+.++..|+||+.+++.+....
T Consensus 149 ---------------------------------------------------------~~~aALagGVTTvi~~G~gP~~~ 171 (573)
T PRK13206 149 ---------------------------------------------------------IVDEALAAGITTLIGGGTGPAEG 171 (573)
T ss_pred ---------------------------------------------------------HHHHHHcCCeEEEEcCCCCcccc
Confidence 12568999999999975432111
Q ss_pred cccc-chHHHHHHHHHHhhcCCCeeEEEEccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 275 SVQL-SWEDFADVYQWASYSEKMKIRVCLFFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 275 ~~~~-~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
.... ..+......+.++......+++.++...... .+..+..+. ...|+|.. +.+
T Consensus 172 t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g~~~~~~~L~el~~a---------GA~GfKi~-------------~d~ 229 (573)
T PRK13206 172 SKATTVTPGAWHLARMLEALDGWPVNVALLGKGNTVSAEALWEQLRG---------GAGGFKLH-------------EDW 229 (573)
T ss_pred CcccccccchhHHHHHHHHhhcCceeEEEecCcCcCCHHHHHHHHHC---------CCcEEeec-------------Ccc
Confidence 1111 1111111111122223466777765543222 222222211 11233332 111
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHHHHhcCCCCCCceEeeccCC---Chhh
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRAN---DLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGT 425 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~H~~~~---~~~~ 425 (579)
..+++.+.+.++.|+++|+++.+|+..-.+. +..+++ ..+...++.|.... +..+
T Consensus 230 ----------g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~~E~t~aa---------~~gr~iH~~H~egaggghapd 290 (573)
T PRK13206 230 ----------GSTPAAIDACLRVADAAGVQVALHSDTLNEAGFVEDTLAA---------IAGRSIHAYHTEGAGGGHAPD 290 (573)
T ss_pred ----------CCCHHHHHHHHHHHHHhCCEEEEECCCccccchhhHHHHH---------hcCCeEEEEeccCCCcCcccH
Confidence 1678999999999999999999999733211 111211 23456677777643 2334
Q ss_pred HHHHh-hCCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 426 AARFG-DQGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 426 ~~~~~-~~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
+-++. ..++-.+.+..... ++....++++. . +....-..|++.|+.+++||
T Consensus 291 ~~~~~~~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir---~-~ti~ae~~l~d~G~~~~~~S 366 (573)
T PRK13206 291 IITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIR---P-STIAAEDVLHDMGAISMIGS 366 (573)
T ss_pred HHHhcCCCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhcc---c-eeeccCchHhhCCcEEeccC
Confidence 44433 33433322211111 12222222222 2 44556678999999999999
Q ss_pred CCCC------CCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 481 DWPV------ADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 481 D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
|++. ...++|+.++.+..|.... ..+.....++.+++|+++|.|||+++|+++.+|+|++||.|||||||.+
T Consensus 367 Ds~~~~~~~e~~~~~~q~a~~~~~rr~~l--~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d 444 (573)
T PRK13206 367 DSQAMGRIGEVVLRTWQTAHVMKRRRGAL--PGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPA 444 (573)
T ss_pred CccccccccchhhhHHHHHHHHHhccCCC--CCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECcc
Confidence 9997 4589999999998765421 1123467799999999999999999999988999999999999999988
Q ss_pred CCCChhhccCCeEEEEEECCEEeCC
Q 008063 555 SWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 555 ~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+|. .++..||++|+++|.
T Consensus 445 ~f~-------~~~~~ti~~G~iv~~ 462 (573)
T PRK13206 445 FFG-------VRPHAVLKGGAIAWA 462 (573)
T ss_pred ccC-------CCccEEEECCEEEEe
Confidence 764 267899999999873
No 44
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.97 E-value=5e-30 Score=268.46 Aligned_cols=346 Identities=20% Similarity=0.198 Sum_probs=220.2
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeeccccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
...++++|+|++|+++.+ ....+|.|+||||++|++...... ..+.+.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~~mDlVI~Na~Vvd~~g--i~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P 141 (568)
T PRK13207 64 DGAVDTVITNALILDHWG--IVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP 141 (568)
T ss_pred cccCCEEEECeEEECCCC--eEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc
Confidence 346789999999999744 367899999999999997422110 012357899999999999999999997422
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHH
Q 008063 116 GLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVA 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~ 195 (579)
+
T Consensus 142 ~------------------------------------------------------------------------------- 142 (568)
T PRK13207 142 Q------------------------------------------------------------------------------- 142 (568)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCC-CC
Q 008063 196 LQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYP-GE 274 (579)
Q Consensus 196 ~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~-~~ 274 (579)
..+.++..|+||+.+++.+.. +.
T Consensus 143 --------------------------------------------------------~~~aALagGVTTVi~mg~gP~~gt 166 (568)
T PRK13207 143 --------------------------------------------------------QIEEALASGVTTMIGGGTGPATGT 166 (568)
T ss_pred --------------------------------------------------------HHHHHHcCCCCEEEcCCcCCccCC
Confidence 124578999999999754321 11
Q ss_pred ccccchHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 275 SVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
.+....+......+.++.....++++.++.... ...+..+..+. ...++|++.| +
T Consensus 167 ~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g~~~~~~~L~e~i~a---------GA~gfKi~~d-------------~- 223 (568)
T PRK13207 167 NATTCTPGPWHIHRMLQAADAFPMNIGFLGKGNASLPEALEEQIEA---------GAIGLKLHED-------------W- 223 (568)
T ss_pred cccccccchHHHHHHHHHhhcCCceEEEEcCCCcccHHHHHHHHHc---------CCCEEeecCC-------------C-
Confidence 111111111111111222223445555443221 12222222111 1123443311 1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHH---HHHHHHHHHHHHhcCCCCCCceEeecc----CCChhh
Q 008063 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRAN---DLVLDMYKSVVVTTGKRDQRFRIEHAQ----HLASGT 425 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~H~~----~~~~~~ 425 (579)
..+++.+.++++.|+++|+++.+|+....+. +..+++ ..+...++.|.. -..++.
T Consensus 224 ---------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a---------~~g~~iH~~H~egaggghapdi 285 (568)
T PRK13207 224 ---------GATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAA---------FKGRTIHTFHTEGAGGGHAPDI 285 (568)
T ss_pred ---------CCCHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHh---------cCCCEEEEEeecCCCcCCchHH
Confidence 1468899999999999999999999632221 222222 223345566654 245777
Q ss_pred HHHHhhCCcEEEecccccccc------------------------hhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 426 AARFGDQGIVASMQPQHLLDD------------------------ADSARKKLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 426 ~~~~~~~~i~~~~~p~~~~~~------------------------~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
++.+...++..+.+.....+. ....++++. . +....-..|++.|+.++++||
T Consensus 286 i~~~~~~~v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir---~-~t~~ae~~l~d~Ga~~~~~SD 361 (568)
T PRK13207 286 IKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIR---R-ETIAAEDILHDLGAISMISSD 361 (568)
T ss_pred HHHhhcCCCccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcc---c-eeecccchhhhCCCEEEecCC
Confidence 788888776554333222221 122222222 2 445556678999999999999
Q ss_pred CCCCC---CCHHHHHHHHHcccCCCCCC----CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 482 WPVAD---INPLCAIRTAMKRIPPGWDN----AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 482 ~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
++... .+++..++.++.|....+.. .+..+..++.+ |+++|+|||+++|+++.+|+|++||.||||||+.+
T Consensus 362 ~p~~~~~~~~~~r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~--l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d 439 (568)
T PRK13207 362 SQAMGRVGEVIIRTWQTAHKMKVQRGPLPGDSGRNDNFRVKRY--IAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPA 439 (568)
T ss_pred cccccccccchhHHHHHHHHHHHccCCCCcccccCccchHHHH--HHHHhHHHHHHcCCCcCccccCCCCcCCEEEECch
Confidence 99773 67888888888775432211 13344555665 99999999999999999999999999999999988
Q ss_pred CCCChhhccCCeEEEEEECCEEeC
Q 008063 555 SWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 555 ~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++. .++..||++|+++|
T Consensus 440 ~f~-------~~~~~ti~~G~iv~ 456 (568)
T PRK13207 440 FFG-------VKPELVLKGGMIAW 456 (568)
T ss_pred hcC-------CCceEEEECCEEEE
Confidence 865 25779999999987
No 45
>PRK09357 pyrC dihydroorotase; Validated
Probab=99.97 E-value=9.9e-30 Score=268.74 Aligned_cols=211 Identities=19% Similarity=0.178 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------HHHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------VLDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
.+++.+++.++.+++.|+++++|+....-... ......+.....-..+.++++.|+...
T Consensus 156 ~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~ 235 (423)
T PRK09357 156 QDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTA 235 (423)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCH
Confidence 57789999999999999999999974321110 000111111111112468899999886
Q ss_pred ChhhHHHH-hhC--CcEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCH---
Q 008063 422 ASGTAARF-GDQ--GIVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADINP--- 489 (579)
Q Consensus 422 ~~~~~~~~-~~~--~i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~--- 489 (579)
...++.+. ++. ++++.+||++...+.+.+. +..++.|..+...++..++++|+.+++|||++....+.
T Consensus 236 ~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~~ 315 (423)
T PRK09357 236 GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKEC 315 (423)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHccC
Confidence 65444443 333 4777899999876555432 23566776567889999999999999999986543220
Q ss_pred -H-------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-Ch
Q 008063 490 -L-------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-DF 559 (579)
Q Consensus 490 -~-------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~~ 559 (579)
+ ..+...+..... .+..+.+++++++++++|.|||+.+|+++ |+|++|+.|||+|+|.+.. . +.
T Consensus 316 ~~~~~~~G~~g~e~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~A~~~g~~~--G~i~~G~~AD~~i~d~~~~~~v~~ 389 (423)
T PRK09357 316 EFEAAPFGITGLETALSLLYT----TLVKTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFDPEAEWTVDG 389 (423)
T ss_pred CHhhCCCCceEHHHHHHHHHH----HHHHcCCCCHHHHHHHHhHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCEEEch
Confidence 1 011111111000 01134469999999999999999999975 9999999999999997743 2 22
Q ss_pred hhcc-------------CCeEEEEEECCEEeCC
Q 008063 560 AAEV-------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 560 ~~~~-------------~~~v~~v~v~G~~v~~ 579 (579)
..+. ..+|..||++|++||.
T Consensus 390 ~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~ 422 (423)
T PRK09357 390 EDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQ 422 (423)
T ss_pred hhcccCCCCCCCcCCEEeeEEEEEEECCEEEec
Confidence 2211 5589999999999974
No 46
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.1e-31 Score=255.97 Aligned_cols=200 Identities=21% Similarity=0.239 Sum_probs=156.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHH------HHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKS------VVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~------~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
++.+.+.++.+.|+.+++++++|.... .++....+.+.+ +...++..+....++|+.++++++++.++++|..
T Consensus 217 c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~s 296 (439)
T KOG3968|consen 217 CSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCS 296 (439)
T ss_pred CcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCc
Confidence 567788888899999999999998755 455555555444 4455667777899999999999999999999999
Q ss_pred EEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 436 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
+++||.++. .|+ ...++++.+++.|+.+++|||.+. .+...++++++..... ..... ...+|+
T Consensus 297 vshCP~Sn~--------~L~-----sG~~~vr~lL~~~v~VgLGtDv~~--~s~l~a~r~A~~~s~h-L~~~~-~~~~Ls 359 (439)
T KOG3968|consen 297 VSHCPTSNS--------ILG-----SGIPRVRELLDIGVIVGLGTDVSG--CSILNALRQAMPMSMH-LACVL-DVMKLS 359 (439)
T ss_pred eEECCcchh--------hhc-----cCCccHHHHHhcCceEeecCCccc--cccHHHHHHHHHHHHH-HHhcc-CcccCC
Confidence 999999986 555 556689999999999999999753 4445555555432110 00011 446799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhhcc--------------CCeEEEEEECCEEeCC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEV--------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~--------------~~~v~~v~v~G~~v~~ 579 (579)
++|+|.+||.|+|++||+++..|++|+||.+|++++|.+.++ .+..+. +.++..|||+|+.|++
T Consensus 360 ~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l~~~~~~~~lI~~~v~~g~drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 360 MEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPLYRFSGHHDLISKVVYNGDDRNIAEVFVAGKLVKQ 438 (439)
T ss_pred HHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcchhhhccchHHHHHHHHhcCCCCceEEEEEccEEecc
Confidence 999999999999999999999999999999999999988764 221111 4599999999999863
No 47
>PRK08323 phenylhydantoinase; Validated
Probab=99.97 E-value=4.2e-29 Score=267.08 Aligned_cols=210 Identities=16% Similarity=0.098 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH------------------------HHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD------------------------MYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.++++|.++.+|+.....++...+ ..++........+.+.++.|+
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~ 236 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 68899999999999999999999864443332221 111222222334568889998
Q ss_pred cCC-ChhhHHHHhhCCc--EEEecccccccchhHHHH----------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC
Q 008063 419 QHL-ASGTAARFGDQGI--VASMQPQHLLDDADSARK----------KLGVDRAERESYLFQSLLANNALLALGSDWPVA 485 (579)
Q Consensus 419 ~~~-~~~~~~~~~~~~i--~~~~~p~~~~~~~~~~~~----------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~ 485 (579)
... +.+.++.+++.|+ ++.+||.+...+.+.... ..+|.|.+....++..++++|+.++++||+...
T Consensus 237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~ 316 (459)
T PRK08323 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316 (459)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence 764 3356667777774 467999976644443321 124444445566788999999999999998654
Q ss_pred CCC--H------H---------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccE
Q 008063 486 DIN--P------L---------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADF 548 (579)
Q Consensus 486 ~~~--~------~---------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADl 548 (579)
..+ . + .++...+.-. .......++++++++++|.|||++||+.+.+|+|++|+.|||
T Consensus 317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~------~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADl 390 (459)
T PRK08323 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFS------EGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADI 390 (459)
T ss_pred ChHHhcccccCCHhhCCCCcchHhhhHHHHHH------HHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCE
Confidence 311 1 1 1111110000 001234599999999999999999999666899999999999
Q ss_pred EEeCCCC-C-------------CChhhcc-CCeEEEEEECCEEeC
Q 008063 549 VILSTSS-W-------------EDFAAEV-SASIEATYVSGVQAY 578 (579)
Q Consensus 549 vvld~~~-~-------------~~~~~~~-~~~v~~v~v~G~~v~ 578 (579)
||+|.+. + ++..... ..+|..||++|++||
T Consensus 391 vi~d~~~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~ 435 (459)
T PRK08323 391 VIWDPNATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVV 435 (459)
T ss_pred EEEcCCcccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEE
Confidence 9999762 1 1111111 458999999999986
No 48
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.97 E-value=1.9e-29 Score=259.66 Aligned_cols=195 Identities=21% Similarity=0.203 Sum_probs=145.7
Q ss_pred ceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCC
Q 008063 330 GGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKR 409 (579)
Q Consensus 330 ~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~ 409 (579)
..+|++.+|....... ..+...++++.++++++.|++.|+++.+|+.++..++..++. |
T Consensus 135 ~~iK~~~~g~~~~~~~-----------~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~--------G-- 193 (342)
T cd01299 135 DQIKIMATGGVLSPGD-----------PPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRA--------G-- 193 (342)
T ss_pred CEEEEeccCCcCCCCC-----------CCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------C--
Confidence 4578888765322110 012334789999999999999999999999987666655532 2
Q ss_pred CCCceEeeccCCChhhHHHHhhCCcEEEecccccccc---------hhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 410 DQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDD---------ADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~---------~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
...++|+..+++++++++++.|+.++.||.++... .++........+. ....+++.++++|+++++||
T Consensus 194 --~~~i~H~~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~GT 270 (342)
T cd01299 194 --VDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLE-AGRDALRRAHKAGVKIAFGT 270 (342)
T ss_pred --CCEEeecCCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHH-HHHHHHHHHHHcCCeEEEec
Confidence 45899999999999999999999999998865321 1111111111122 55678999999999999999
Q ss_pred CCCCC---CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 481 DWPVA---DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 481 D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
|.+.. ..+.+.++..+. +.+++++++|+++|.|||+++|+++.+|+|++||.|||||+|.||++
T Consensus 271 D~~~~~~~~~~~~~e~~~~~-------------~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~pl~ 337 (342)
T cd01299 271 DAGFPVPPHGWNARELELLV-------------KAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGDPLE 337 (342)
T ss_pred CCCCCCCchhHHHHHHHHHH-------------HhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCChhh
Confidence 98741 134455554433 23589999999999999999999888999999999999999999998
Q ss_pred Chhh
Q 008063 558 DFAA 561 (579)
Q Consensus 558 ~~~~ 561 (579)
++.+
T Consensus 338 di~~ 341 (342)
T cd01299 338 DIAV 341 (342)
T ss_pred hhhh
Confidence 7654
No 49
>PRK06189 allantoinase; Provisional
Probab=99.97 E-value=1.6e-28 Score=260.58 Aligned_cols=364 Identities=19% Similarity=0.236 Sum_probs=223.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+++++|+|++|+++++. ..++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+..++.
T Consensus 2 ~~~~~i~~~~v~~~~~~--~~~~v~i~~G~I~~i~~~~~-----~~~~~~iD~~g~~vlPG~ID~H~H~~~~~~------ 68 (451)
T PRK06189 2 MYDLIIRGGKVVTPEGV--YRADIGIKNGKIAEIAPEIS-----SPAREIIDADGLYVFPGMIDVHVHFNEPGR------ 68 (451)
T ss_pred CccEEEECCEEEcCCCc--EEEEEEEECCEEEEecCCCC-----CCCCeEEECCCCEEecCEEEeeeccCCCCC------
Confidence 35789999999987653 56899999999999986432 245689999999999999999999754211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 69 -------------------------------------------------------------------------------- 68 (451)
T PRK06189 69 -------------------------------------------------------------------------------- 68 (451)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+.+.|+|++.++... ...+....+.+
T Consensus 69 ----------------------------------------~~~~~~~~~~~aa~~gGvTt~~~~p~~--t~p~~~~~~~~ 106 (451)
T PRK06189 69 ----------------------------------------THWEGFATGSAALAAGGCTTYFDMPLN--SIPPTVTREAL 106 (451)
T ss_pred ----------------------------------------CCcccHHHHHHHHHhCCEEEEEECCCC--CCCCCCcHHHH
Confidence 001133445677899999999998411 11222233333
Q ss_pred HHHHHHHhhcCCCeeEEEEc--cCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 284 ADVYQWASYSEKMKIRVCLF--FPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
....+.++. ...+++.++ ....+.++..++... ...++|++.+.. +. .+..
T Consensus 107 ~~~~~~~~~--~~~~d~~~~~~~~~~~~~~l~~l~~~---------Gv~~~k~f~~~~----------~~------~~~~ 159 (451)
T PRK06189 107 DAKAELARQ--KSAVDFALWGGLVPGNLEHLRELAEA---------GVIGFKAFMSNS----------GT------DEFR 159 (451)
T ss_pred HHHHHHhCc--CceEeEEEEecccccCHHHHHHHHHc---------CCcEEEEEcccc----------CC------CCcC
Confidence 333333322 223444432 222223333222211 122445543210 00 0112
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH------------------------HHHHHHHHHhcCCCCCCceEee
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLV------------------------LDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~i~H 417 (579)
..+...+.+.++.+++.+..+.+|+..+.-.+.. .....+.....-..+.+.++.|
T Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~~~hi~H 239 (451)
T PRK06189 160 SSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVH 239 (451)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2567788999999999999999999643211110 0011111111111245778888
Q ss_pred ccCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC
Q 008063 418 AQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADIN 488 (579)
Q Consensus 418 ~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~ 488 (579)
...... +.+..+++.| +++.+||++...+.+.+.. ..++.|......++..++++|++++++||+......
T Consensus 240 iSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~ 319 (451)
T PRK06189 240 ISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPE 319 (451)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHH
Confidence 875332 3444445554 7888999998766555432 345566556677889999999999999997544221
Q ss_pred ------HH----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 489 ------PL----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 489 ------~~----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
.+ ..+...+... ..+.+++++++++++|.|||+.||++ .+|+|++|+.|||+|+|
T Consensus 320 ~K~~~~~~~~~~G~~g~e~~l~~~~~~~--------~~~~~l~~~~~~~~~t~npA~~lgl~-~~G~l~~G~~ADlvi~d 390 (451)
T PRK06189 320 LKEGDDFFLVWGGISGGQSTLLVMLTEG--------YIERGIPLETIARLLATNPAKRFGLP-QKGRLEVGADADFVLVD 390 (451)
T ss_pred HcCcCCcccCCCCceeHHHHHHHHHHHH--------HhcCCCCHHHHHHHHhhhHHHHhCCC-CCCcccCCCcCCEEEEc
Confidence 11 0111111100 13446999999999999999999995 47999999999999999
Q ss_pred CC-CCC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 553 TS-SWE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 553 ~~-~~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
.+ ++. ++... ...+|..|+++|++||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~tiv~G~~v~ 431 (451)
T PRK06189 391 LDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVY 431 (451)
T ss_pred CCCCEEECHHHhhhcCCCCCcCCcEEEeEEEEEEECCEEEE
Confidence 86 332 11111 1457999999999987
No 50
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.97 E-value=6.4e-29 Score=258.08 Aligned_cols=181 Identities=18% Similarity=0.202 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-----------hhhHHHHh
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-----------SGTAARFG 430 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-----------~~~~~~~~ 430 (579)
.+++.+++.++.|++.|+++++|+.... ...+.++ .......+.||.... .+++.+++
T Consensus 170 ~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~----------~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
T PRK12394 170 YGLKPLTETLRIANDLRCPVAVHSTHPVLPMKELVS----------LLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQAR 239 (379)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHH----------hcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHH
Confidence 5688999999999999999999996432 2111111 122344688887622 34667788
Q ss_pred hCCcEE-EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC--CCHHHHHHHHHcccCCCCCC
Q 008063 431 DQGIVA-SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD--INPLCAIRTAMKRIPPGWDN 506 (579)
Q Consensus 431 ~~~i~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~ 506 (579)
+.|+.+ ..++.++. +...+..++++|+ ++++|||...+. .+++..|...+.+.
T Consensus 240 ~~G~~~~~~~g~s~~-----------------~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~------ 296 (379)
T PRK12394 240 ERGVIFDAANGRSHF-----------------DMNVARRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKY------ 296 (379)
T ss_pred hCCeEEEecCCcccc-----------------chHHHHHHHHCCCCceEEECCCCCCCcccCccchHHHHHHHH------
Confidence 889876 44544321 1123468889995 899999987653 23334444444322
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhhcc--------CCeEEEEEECCEEe
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEV--------SASIEATYVSGVQA 577 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~--------~~~v~~v~v~G~~v 577 (579)
.+.+++++++++++|.|||+.+|+++.+|+|++|+.|||+++|.+... ...+.. ...|..||++|++|
T Consensus 297 ---~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~~~d~~g~~~~~~~~~~v~~t~v~G~~v 373 (379)
T PRK12394 297 ---LALGMALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVEFADIHGETLTGTHVLVPQMTIKSGEIL 373 (379)
T ss_pred ---HHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCccCEEEEecCcCcceeccCCCCEEEeeeecceEEEEECCEEE
Confidence 135699999999999999999999755899999999999999977533 222221 23789999999998
Q ss_pred CC
Q 008063 578 YP 579 (579)
Q Consensus 578 ~~ 579 (579)
|.
T Consensus 374 ~~ 375 (379)
T PRK12394 374 YR 375 (379)
T ss_pred Ee
Confidence 73
No 51
>PRK13985 ureB urease subunit beta; Provisional
Probab=99.97 E-value=7.7e-29 Score=256.35 Aligned_cols=349 Identities=20% Similarity=0.200 Sum_probs=217.0
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
...+++|+|++|++..+ ...++|.|+||||++|++...... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 63 ~~~DlVI~Na~IiD~~g--i~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~ 140 (568)
T PRK13985 63 EELDLIITNALIIDYTG--IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFIS 140 (568)
T ss_pred CcCCEEEECeEEECCCC--cEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCC
Confidence 36789999999999655 356799999999999997532110 01246789999999999999999999732
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
++
T Consensus 141 P~------------------------------------------------------------------------------ 142 (568)
T PRK13985 141 PQ------------------------------------------------------------------------------ 142 (568)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC-CC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-PG 273 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~-~~ 273 (579)
..+.+++.|+||+.+++.+. ++
T Consensus 143 ---------------------------------------------------------~~~~AlagGVTTvI~~G~gP~~~ 165 (568)
T PRK13985 143 ---------------------------------------------------------QIPTAFASGVTTMIGGGTGPADG 165 (568)
T ss_pred ---------------------------------------------------------HHHHHhcCceEEEEccCcCCCCC
Confidence 11348999999999865432 12
Q ss_pred CccccchHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 274 ESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
..+....+....+.+.++.....++++.++.... +..+..+..+. + ..|+|.. +.+
T Consensus 166 T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG~~~~l~eL~el~~a-G--------A~GfK~~-------------ed~ 223 (568)
T PRK13985 166 TNATTITPGRRNLKWMLRAAEEYSMNLGFLGKGNSSNDASLADQIEA-G--------AIGFKIH-------------EDW 223 (568)
T ss_pred CCCcCCCCcHHHHHHHHHHhhccCccEEEecCCccCCHHHHHHHHHc-C--------CEEEEEC-------------Ccc
Confidence 2221112222211122222233456666553221 12222222111 0 1123321 111
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC---ChhhHHH
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGTAAR 428 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~---~~~~~~~ 428 (579)
..++..+.+.++.++++++++.+|+....+....-..++. ..+...++.|.... +..++-+
T Consensus 224 ----------g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~E~t~aa------~~gr~iH~~H~egaggghapdi~~ 287 (568)
T PRK13985 224 ----------GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAA------IAGRTMHTFHTEGAGGGHAPDIIK 287 (568)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhhHHHHHH------hcCCeEEEEeccCCCccchhhHHH
Confidence 1578899999999999999999999743222111111111 23446677777643 3334444
Q ss_pred Hhh-CCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 429 FGD-QGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 429 ~~~-~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
+.. .++-.+.+..... ++....++++. . +....-..|++.|+...++||+.
T Consensus 288 ~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir---~-~tiaaed~l~d~G~~s~~~SDs~ 363 (568)
T PRK13985 288 VAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIR---P-QTIAAEDTLHDMGIFSITSSDSQ 363 (568)
T ss_pred HcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcc---c-cccccCchhhhCCcEEEEeccch
Confidence 433 3433322211111 22222222322 2 44555667899999999999987
Q ss_pred CCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC
Q 008063 484 VAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556 (579)
Q Consensus 484 ~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~ 556 (579)
... ...|+....+.. +...... -...-.++.+++|+++|.|||+++|+++.+|+|++||.|||||||.+++
T Consensus 364 ~mgr~ge~~~r~~q~a~k~~~~~g~l~~~--~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f 441 (568)
T PRK13985 364 AMGRVGEVITRTWQTADKNKKEFGRLKEE--KGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF 441 (568)
T ss_pred hhCcccceeeehHHHHHHHHHhcCCCCCc--cccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccC
Confidence 443 678888888876 3322111 1123468999999999999999999999999999999999999999987
Q ss_pred CChhhccCCeEEEEEECCEEeCC
Q 008063 557 EDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 557 ~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
.. ++..||++|+++|.
T Consensus 442 ~~-------~pe~vi~~G~iv~~ 457 (568)
T PRK13985 442 GV-------KPNMIIKGGFIALS 457 (568)
T ss_pred CC-------ChheEEECCEEEEc
Confidence 52 57799999999984
No 52
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=99.97 E-value=5.5e-29 Score=257.45 Aligned_cols=356 Identities=18% Similarity=0.167 Sum_probs=215.4
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+++++|+|++|+++++. ..++|+|+||||++|++..+ +..++||++|++|+|||||+|+|......
T Consensus 1 ~~~~~i~~~~v~~~~~~--~~~~i~i~~g~I~~i~~~~~------~~~~~iDa~g~~v~PG~ID~H~h~~~~~~------ 66 (383)
T PRK15446 1 MMEMILSNARLVLPDEV--VDGSLLIEDGRIAAIDPGAS------ALPGAIDAEGDYLLPGLVDLHTDNLEKHL------ 66 (383)
T ss_pred CccEEEECcEEEcCCCc--eeeeEEEECCEEEEecCCCC------CCCceEeCCCCEEEeCeEEcccCCccccc------
Confidence 36799999999987653 37799999999999997432 23478999999999999999997532100
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
.|
T Consensus 67 ----------------------------------------~p-------------------------------------- 68 (383)
T PRK15446 67 ----------------------------------------AP-------------------------------------- 68 (383)
T ss_pred ----------------------------------------CC--------------------------------------
Confidence 00
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC--C--CCccccc
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY--P--GESVQLS 279 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~--~--~~~~~~~ 279 (579)
.++.. -...+.+....+.+.+.|+||+.|+.... + +......
T Consensus 69 -----~~~~~-----------------------------~~~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~ 114 (383)
T PRK15446 69 -----RPGVD-----------------------------WPADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDL 114 (383)
T ss_pred -----CCCCc-----------------------------cchHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHH
Confidence 00000 00113455567889999999999963211 1 1111111
Q ss_pred hHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcc--------cccC
Q 008063 280 WEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSA--------LFHE 349 (579)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~--------~~~~ 349 (579)
...+.+.+......+..-+++.++.... +.+...+...... ....++|.+.|...+.... ....
T Consensus 115 ~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~~------~g~~~~k~fm~~~p~~~~~~~~~~~~~~~~~ 188 (383)
T PRK15446 115 ARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALLA------HPRVDLVSLMDHTPGQRQFRDLEKYREYYAG 188 (383)
T ss_pred HHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHhc------CCCcCEEEEeCCCCccccccCHHHHHHHHHh
Confidence 1122233332122344444444433332 2122222222111 1223567777765321100 0000
Q ss_pred CCCCCCC----------CCcccCCCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeec
Q 008063 350 PYADEPH----------NYGLQVMELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 350 ~~~~~~~----------~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+. ..+ ......++.+.++++++.|+++|+++..|+. +...+....+ .| ...+.|
T Consensus 189 ~~g-~~~~e~~~~~~~~~~~~~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~~--------~G----v~~~e~- 254 (383)
T PRK15446 189 KYG-LSDEEFDAFVEERIALSARYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAHA--------LG----VAIAEF- 254 (383)
T ss_pred hcC-CCHHHHHHHHHHHHHhHhhcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHHH--------cC----CceeeC-
Confidence 000 000 0011235789999999999999999999994 4433332221 12 223333
Q ss_pred cCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHc
Q 008063 419 QHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMK 498 (579)
Q Consensus 419 ~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~ 498 (579)
..+.+..+.+++.|+.+..++...... +. .....+++.+++.|+++++|||.. +.+++..+....
T Consensus 255 -~~~~e~~~~~~~~g~~v~~~~p~~~r~--------~~---~~~~~~~~~~~~~Gv~~~lgSD~~--p~~~~~~~~~~~- 319 (383)
T PRK15446 255 -PTTLEAARAARALGMSVLMGAPNVVRG--------GS---HSGNVSALDLAAAGLLDILSSDYY--PASLLDAAFRLA- 319 (383)
T ss_pred -CCcHHHHHHHHHCCCEEEeCCcccccC--------Cc---ccchHhHHHHHHCCCcEEEEcCCC--hhhHHHHHHHHH-
Confidence 456777888888898877664321100 00 023446788999999999999973 334444433322
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 499 RIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 499 ~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
...+++++++++++|.|||+.+|++++ |+|++|+.|||+|+|.++. ...+..||++|++||
T Consensus 320 -----------~~~gls~~~al~~~T~npA~~lgl~~~-G~I~~G~~ADlvv~d~~~~-------~~~v~~v~~~G~~v~ 380 (383)
T PRK15446 320 -----------DDGGLDLPQAVALVTANPARAAGLDDR-GEIAPGKRADLVRVRRAGG-------LPVVRAVWRGGRRVF 380 (383)
T ss_pred -----------HhcCCCHHHHHHHHhHHHHHHcCCCCC-cCcCCCCcCCEEEEcCCCC-------CcchheEEECCEEEE
Confidence 234699999999999999999999764 9999999999999998831 137889999999987
Q ss_pred C
Q 008063 579 P 579 (579)
Q Consensus 579 ~ 579 (579)
.
T Consensus 381 ~ 381 (383)
T PRK15446 381 L 381 (383)
T ss_pred e
Confidence 4
No 53
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=99.97 E-value=3.7e-28 Score=257.65 Aligned_cols=361 Identities=19% Similarity=0.242 Sum_probs=219.4
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
+++|+|++|+++++. ..++|+|+||||++|++... +++.++||++|++|+|||||+|+|+...+..
T Consensus 1 dl~i~~~~v~~~~~~--~~~~v~i~dg~I~~i~~~~~-----~~~~~~id~~g~~v~PG~ID~H~H~~~~~~~------- 66 (443)
T TIGR03178 1 DLIIRGGRVILPNGE--READVGVKGGKIAAIGPDIL-----GPAAKIIDAGGLVVFPGVVDTHVHINEPGRT------- 66 (443)
T ss_pred CEEEECcEEECCCCc--eEEEEEEECCEEEEeeCCCC-----CCCCeEEECCCCEEeccEeccccccCCCCcc-------
Confidence 478999999998654 56899999999999987521 2456899999999999999999998542110
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
T Consensus 67 -------------------------------------------------------------------------------- 66 (443)
T TIGR03178 67 -------------------------------------------------------------------------------- 66 (443)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCc-CCCCCccccchHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGR-YYPGESVQLSWEDFA 284 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~-~~~~~~~~~~~~~~~ 284 (579)
..+.+....+.+++.|+|++.++.. ..+ +..+.+.+.
T Consensus 67 ---------------------------------------~~~~~~~~~~~~~~gGvTtv~dmp~~~~p---~~~~~~~~~ 104 (443)
T TIGR03178 67 ---------------------------------------EWEGFETGTRAAAAGGITTYIDMPLNSIP---ATTTRASLE 104 (443)
T ss_pred ---------------------------------------ccchHHHHHHHHHcCCeEEEEECCCCCCC---CCCcHHHHH
Confidence 0012334566789999999999852 212 222222222
Q ss_pred HHHHHHhhcCCCeeEEEEcc--CccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFF--PLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+.... ...+++..+. ...+..+..++... ...++|++.+.. .+ .....
T Consensus 105 ~~~~~~~~--~~~~d~~~~~~~~~~~~~~i~~~~~~---------G~~~ik~~~~~~---------~~-------~~~~~ 157 (443)
T TIGR03178 105 AKFEAAKG--KLAVDVGFWGGLVPYNLDDLRELDEA---------GVVGFKAFLSPS---------GD-------DEFPH 157 (443)
T ss_pred HHHHHhcc--CCceeEEEEeccCCCCHHHHHHHHHC---------CCcEEEEEeccc---------CC-------CCccc
Confidence 33333322 2233443322 22222222222110 122455553210 00 01123
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH------------------------HHHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLV------------------------LDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.+++.|+++.+|+......+.. .....+.....-..+.+.++.|.
T Consensus 158 ~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vhi~Hi 237 (443)
T TIGR03178 158 VDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVHVVHL 237 (443)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 678899999999999999999997643222211 11111111111112457788888
Q ss_pred cCCC-hhhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC--
Q 008063 419 QHLA-SGTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI-- 487 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-- 487 (579)
.... -+.++.+++.| +++.+||++.....+.+.. ..++.|.......+.+.++.|...+++||......
T Consensus 238 ss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~ 317 (443)
T TIGR03178 238 SSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDL 317 (443)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHH
Confidence 7633 34455556665 5667799997655544322 23344443445567777889999999999853321
Q ss_pred ----CHH----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 488 ----NPL----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 488 ----~~~----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
+.+ ..+..++.. ...+.+++++++++++|.|||+.+|++ .+|+|++|+.|||||+|.
T Consensus 318 K~~~~~~~~~~G~~g~e~~l~~~~~~--------~~~~~~l~~~~~~~~~t~~pA~~~g~~-~~G~l~~G~~Ad~vi~d~ 388 (443)
T TIGR03178 318 KRAGDFFKAWGGIAGLQSTLDVMFDE--------AVQKRGLPLEDIARLMATNPAKRFGLA-QKGRIAPGKDADFVFVDP 388 (443)
T ss_pred cCcCChhhCCCCeeEHHHhHHHHHHH--------HHHhcCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcC
Confidence 111 001111110 012456999999999999999999995 479999999999999998
Q ss_pred C-CCC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 554 S-SWE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 554 ~-~~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+ ++. +...+ ...+|..||++|++||
T Consensus 389 ~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~ 428 (443)
T TIGR03178 389 DESYTLTPDDLYYRHKVSPYVGRTIGGRVRATYLRGQCIY 428 (443)
T ss_pred CCcEEEcHHHhhhcCCCCCcCCcEEeeEEEEEEECCEEEE
Confidence 5 543 22111 1457999999999987
No 54
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.97 E-value=8.9e-29 Score=259.56 Aligned_cols=347 Identities=20% Similarity=0.236 Sum_probs=209.6
Q ss_pred cCCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 41 TNLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 41 ~~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
....|+++|+|++|+|..+ ...++|.|+||||++|++..+... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 62 ~~~~MDlVIkNg~VID~~g--i~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~ 139 (567)
T TIGR01792 62 NAGVLDLVITNALILDWTG--IYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYIS 139 (567)
T ss_pred ccccCcEEEECeEEECCCC--eEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCC
Confidence 3456889999999999644 467899999999999997532210 00135689999999999999999999732
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
+.
T Consensus 140 P~------------------------------------------------------------------------------ 141 (567)
T TIGR01792 140 PQ------------------------------------------------------------------------------ 141 (567)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC-CC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-PG 273 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~-~~ 273 (579)
..+.++..|+|++.+.|.+. ++
T Consensus 142 ---------------------------------------------------------~~~aAl~gGVTTmI~~Gtgp~~~ 164 (567)
T TIGR01792 142 ---------------------------------------------------------QVQAALDNGITTLIGGGTGPADG 164 (567)
T ss_pred ---------------------------------------------------------HHHHHHhCceEEEecCCCccccC
Confidence 24568899999999965421 11
Q ss_pred CccccchHHHHHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 274 ESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
..+....+......+.++.....++++.++.... ......+..+. . ..++| .+.+|
T Consensus 165 t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g~~~~~~~L~e~i~a----G-----a~gfK-------------~h~~y 222 (567)
T TIGR01792 165 TNATTCTPGPWYLHRMLQAADGLPINFGFTGKGSGSGPAALIEQIEA----G-----ACGLK-------------VHEDW 222 (567)
T ss_pred CCCcccccchhhHHHHHHHhccCCccEEEEeCCccchHHHHHHHHHc----C-----CcEEE-------------eCCCC
Confidence 1111112222222222223344566655442211 11111121110 0 01222 12222
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHHHHHhcCCCCCCceEeecc---CCChhh
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA---NDLVLDMYKSVVVTTGKRDQRFRIEHAQ---HLASGT 425 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~i~H~~---~~~~~~ 425 (579)
. .+++.+.+.++.|+++|+++++|+....+ ++..++.+.. ......|.. ..+..+
T Consensus 223 ~----------~s~e~L~~al~~A~e~gv~V~iH~ET~~E~g~ve~t~~a~g~---------rpIh~~H~~G~g~ghapd 283 (567)
T TIGR01792 223 G----------ATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTIAAFKG---------RTIHTYHTEGAGGGHAPD 283 (567)
T ss_pred C----------CCHHHHHHHHHHHHHcCCEEEEeCCCcccchHHHHHHHHHCC---------CcchhHhhcCCCCCcHHH
Confidence 2 78999999999999999999999964454 4444444422 122222222 222223
Q ss_pred HHHH-hhCCcEEEec-cc-----------------------ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 426 AARF-GDQGIVASMQ-PQ-----------------------HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 426 ~~~~-~~~~i~~~~~-p~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
+-++ ...++-.+.+ |. ...++....++++.+ +....-..|++.|+..+++|
T Consensus 284 i~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~----~t~~ae~~l~d~G~~~~~~s 359 (567)
T TIGR01792 284 IIVVVGYNNILPSSTNPTLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRK----ETIAAEDVLQDMGAISMISS 359 (567)
T ss_pred HHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEEeccCCCCCcccchhhhhhccc----eeccccchhhhCCcEEEecC
Confidence 3333 2233322211 11 111223333333332 44555677899999999999
Q ss_pred CCCCC------CCCHHHHHHHHHccc-CCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 481 DWPVA------DINPLCAIRTAMKRI-PPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 481 D~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
|+... ....|+....+.... .......+..++.++.+ |+++|.|||+++|+++.+|+|++||.||||||+.
T Consensus 360 Ds~~mgr~~~~~~r~~q~a~k~~~~~g~~~~~~~~~~~~rl~r~--L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~ 437 (567)
T TIGR01792 360 DSQAMGRIGEVVTRCWQTADKMKKQRGPLPGDSPGNDNNRVKRY--VAKYTINPAITHGISDYIGSIEVGKLADLVLWEP 437 (567)
T ss_pred CchhhCcccceeechHHHHHHHHHhcCCCcccccCChhhhHHHH--HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcC
Confidence 98633 256777766664321 11111112234455555 9999999999999999999999999999999999
Q ss_pred CCCCChhhccCCeEEEEEECCEEeC
Q 008063 554 SSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 554 ~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++|.. ++..||++|+++|
T Consensus 438 d~f~~-------~p~~v~~~G~i~~ 455 (567)
T TIGR01792 438 AFFGV-------KPDMVLKGGLIAW 455 (567)
T ss_pred cccCC-------ChheEEECCEEEE
Confidence 98762 4678999999886
No 55
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=99.97 E-value=4e-28 Score=258.53 Aligned_cols=363 Identities=21% Similarity=0.263 Sum_probs=218.3
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
+++|+|++|+++.+ ...++|+|+||||++|++.... +++.++||++|++|+|||||+|+|+...+..
T Consensus 1 dl~i~~~~v~~~~~--~~~~~v~I~~g~I~~i~~~~~~----~~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~------- 67 (447)
T cd01315 1 DLVIKNGRVVTPDG--VREADIAVKGGKIAAIGPDIAN----TEAEEVIDAGGLVVMPGLIDTHVHINEPGRT------- 67 (447)
T ss_pred CEEEECCEEECCCC--ceEeEEEEECCEEEEEeCCCCC----CCCCeEEECCCCEEeccEeeceeccCCCCcc-------
Confidence 47899999999844 3567999999999999875321 2467899999999999999999998532110
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
T Consensus 68 -------------------------------------------------------------------------------- 67 (447)
T cd01315 68 -------------------------------------------------------------------------------- 67 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCc-CCCCCccccchHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGR-YYPGESVQLSWEDFA 284 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~-~~~~~~~~~~~~~~~ 284 (579)
..+.+....+.+++.|+|++.++.. ..+.. ...+.+.
T Consensus 68 ---------------------------------------~~e~~~~~s~aal~gGvTtv~d~p~~~~p~~---~~~~~~~ 105 (447)
T cd01315 68 ---------------------------------------EWEGFETGTKAAAAGGITTIIDMPLNSIPPT---TTVENLE 105 (447)
T ss_pred ---------------------------------------ccccHHHHHHHHHhCCceEEEeCCCCCCCCc---CCHHHHH
Confidence 0012233566689999999999862 11211 1222222
Q ss_pred HHHHHHhhcCCCeeEEEEcc--CccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFF--PLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+... ....+++..+. ......+..++... ...++|++...... .+...
T Consensus 106 ~~~~~~~--~~~~~d~~~~~~~~~~~~~ei~~l~~~---------G~~giKv~~~~~~~----------------~~~~~ 158 (447)
T cd01315 106 AKLEAAQ--GKLHVDVGFWGGLVPGNLDQLRPLDEA---------GVVGFKCFLCPSGV----------------DEFPA 158 (447)
T ss_pred HHHHHhc--cCceeeEEEEEeecCCCHHHHHHHHHc---------CCcEEEEEecccCC----------------CCccc
Confidence 2222222 12234443322 11122222222111 12356655321100 01122
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH------------------------HHHHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL------------------------VLDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+.+.+.++++.+++.|+++.+|+....-... ......+.....-..+.+.++.|.
T Consensus 159 ~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~ 238 (447)
T cd01315 159 VDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHL 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 57889999999999999999999864321110 011111111111112467888897
Q ss_pred cCCC-hhhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC--
Q 008063 419 QHLA-SGTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI-- 487 (579)
Q Consensus 419 ~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-- 487 (579)
.... -+.++.++..| +++.++|++.....+.+.. ..++.|.......+...++.|.+.+++||....+.
T Consensus 239 s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~ 318 (447)
T cd01315 239 SSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPEL 318 (447)
T ss_pred CCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHH
Confidence 6422 23333444444 6777889887655544322 22344443455667778899999999999653321
Q ss_pred ------CHH----------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 488 ------NPL----------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 488 ------~~~----------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
+.+ ..+...+.. +..+.+++++++++++|.|||+++|+++++|+|++|+.|||||+
T Consensus 319 k~~~~~~~~~~~~g~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~ 390 (447)
T cd01315 319 KLLGKGDFFKAWGGISGLQLGLPVMLTE--------AVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVW 390 (447)
T ss_pred hccCCCChhhCCCCeeEHHHhHHHHHHH--------HHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEE
Confidence 110 001111110 01245699999999999999999999877899999999999999
Q ss_pred CCCC-CC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 552 STSS-WE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 552 d~~~-~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
|.+. +. ..+.+ ...+|..||++|++||
T Consensus 391 d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~ti~~G~~v~ 432 (447)
T cd01315 391 DPEEEFTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVY 432 (447)
T ss_pred cCCCCEEEcHHHccccCCCCCccCeEEeeeEEEEEECCEEEE
Confidence 9764 21 11111 1457999999999987
No 56
>PRK13404 dihydropyrimidinase; Provisional
Probab=99.97 E-value=8.6e-29 Score=263.35 Aligned_cols=373 Identities=19% Similarity=0.212 Sum_probs=227.3
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|+++.+. ..++|+|+||||++|++.. +.+.++||++|++|+|||||+|+|+...+..
T Consensus 4 ~d~~i~~~~v~~~~~~--~~~~i~I~dg~I~~i~~~~------~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~------ 69 (477)
T PRK13404 4 FDLVIRGGTVVTATDT--FQADIGIRGGRIAALGEGL------GPGAREIDATGRLVLPGGVDSHCHIDQPSGD------ 69 (477)
T ss_pred CcEEEECCEEEcCCCc--eEEEEEEECCEEEEecCCC------CCCCeEEECCCCEEecCEEEeEEcCCccccC------
Confidence 5689999999997653 4679999999999998642 2456899999999999999999998543100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
+.
T Consensus 70 --------------------------------------~~---------------------------------------- 71 (477)
T PRK13404 70 --------------------------------------GI---------------------------------------- 71 (477)
T ss_pred --------------------------------------Cc----------------------------------------
Confidence 00
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
...+.+....+.+...|+|++.++... .+.....+..
T Consensus 72 ---------------------------------------~~~e~~~~~s~aa~~gGvTtv~~~~~~----~~~~~~~~~l 108 (477)
T PRK13404 72 ---------------------------------------MMADDFYTGTVSAAFGGTTTVIPFAAQ----HRGQSLREAV 108 (477)
T ss_pred ---------------------------------------cccchHHHHHHHHHcCCccEEEEccCC----CCCCCHHHHH
Confidence 001234556677889999999998642 1222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
+..+.... ....+.+..+..... .....+....... ....++|++.+.. ...
T Consensus 109 ~~~~~~~~-~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~-----~G~~~iKi~~~~~--------------------~~~ 162 (477)
T PRK13404 109 EDYHRRAA-GKAVIDYAFHLIVADPTEEVLTEELPALIA-----QGYTSFKVFMTYD--------------------DLK 162 (477)
T ss_pred HHHHHHhc-cCcEEEEEEEEEecCCChhhHHHHHHHHHH-----cCCCEEEEEecCC--------------------CCC
Confidence 33332222 222334433321111 1111111111111 1123567664210 012
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH------------------------HHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM------------------------YKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~i~H~ 418 (579)
++++.+.++++.++++|.++.+|+.....++...+. ..+...-.-..+.+.++.|.
T Consensus 163 ~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi~Hv 242 (477)
T PRK13404 163 LDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHV 242 (477)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 577899999999999999999999755433211100 01110001113567889998
Q ss_pred cCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH---------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC
Q 008063 419 QHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK---------KLGVDRAERESYLFQSLLANNALLALGSDWPVAD 486 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~---------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~ 486 (579)
..-.. +.+..+++.| +++.+||++...+.+.+.. ..++.|..+....+...++.|...+++||....+
T Consensus 243 s~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~ 322 (477)
T PRK13404 243 SGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFR 322 (477)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCC
Confidence 75332 4444455555 7788999998876665432 3455665567788899999999999999976543
Q ss_pred CC------------HHHHHHHHHcccCCCCCCCC---CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEe
Q 008063 487 IN------------PLCAIRTAMKRIPPGWDNAW---IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVIL 551 (579)
Q Consensus 487 ~~------------~~~~~~~~~~~~~~~~~~~~---~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvl 551 (579)
.. .+.....++..........+ ....+++++++++++|.|||+.||+.+.+|+|++|+.||||++
T Consensus 323 ~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlviv 402 (477)
T PRK13404 323 FDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIW 402 (477)
T ss_pred cccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEE
Confidence 21 11110000000000000000 1234699999999999999999999656899999999999999
Q ss_pred CCCC-CC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 552 STSS-WE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 552 d~~~-~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
|.+. +. ++... ...+|..||++|++||
T Consensus 403 d~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv~ 444 (477)
T PRK13404 403 DPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVVV 444 (477)
T ss_pred cCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEEE
Confidence 9763 21 11111 1457889999999986
No 57
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.97 E-value=1.6e-28 Score=257.96 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh----------hhHHHHhhC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS----------GTAARFGDQ 432 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~----------~~~~~~~~~ 432 (579)
.+.+++.++++.++++|.++.+|+..+. .....++++........+.+.++.|+..... +.+++.++.
T Consensus 196 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~--~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~ 273 (415)
T cd01297 196 AGTAELVALARVAARYGGVYQTHVRYEG--DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAE 273 (415)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEECccc--ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHh
Confidence 6789999999999999999999998542 1111222222222222356899999987765 555566664
Q ss_pred --CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC---CCHHHHHHHHHcccCCCCCCC
Q 008063 433 --GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD---INPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 433 --~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~---~~~~~~~~~~~~~~~~~~~~~ 507 (579)
++++.++|.+... ..+++.+.+. .+++++||.+..+ +..+..+...+....
T Consensus 274 G~~v~~e~~p~~~~~-----------------~~~~~~l~~~-~~~~i~SDh~~~~~~~~~~~~~~~~~l~~~~------ 329 (415)
T cd01297 274 GLQVTADVYPYGAGS-----------------EDDVRRIMAH-PVVMGGSDGGALGKPHPRSYGDFTRVLGHYV------ 329 (415)
T ss_pred CCcEEEEeCCCCCCc-----------------HHHHHHHHcC-CCceeeeCCCcCCCCCcchhCCHHHHHHHHh------
Confidence 4666788865432 1246677777 8999999986532 111111111111100
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChh-----hccCCeEEEEEECCEEeC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFA-----AEVSASIEATYVSGVQAY 578 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~-----~~~~~~v~~v~v~G~~v~ 578 (579)
.....++++++++++|.|||+.+|+++ +|+|++|+.|||||+|.+.+.... ......|..||++|++||
T Consensus 330 -~~~~~~~~~~~~~~~t~~pA~~~gl~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~v~~viv~G~~v~ 403 (415)
T cd01297 330 -RERKLLSLEEAVRKMTGLPARVFGLAD-RGRIAPGYRADIVVFDPDTLADRATFTRPNQPAEGIEAVLVNGVPVV 403 (415)
T ss_pred -cccCCCCHHHHHHHHHHHHHHHhCCCC-CceeCCCCCCCEEEEcccccccccchhhhccCCCCceEEEECCEEEE
Confidence 012349999999999999999999984 699999999999999988754211 122447999999999986
No 58
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.2e-28 Score=254.61 Aligned_cols=368 Identities=21% Similarity=0.273 Sum_probs=236.0
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++++++ + ....++|+|+||+|++|++..+.. .+.++||++|++|+||+||.|+|+..++.
T Consensus 1 ~~~lIk~~~iv~~-~-~~~~~di~i~~g~I~~Ig~~l~~~----~~~~iiD~~g~~v~PG~ID~HVH~repg~------- 67 (430)
T COG0044 1 MDLLIKNARVVDP-G-EDEVADILIKDGKIAAIGKNLEPT----SGAEIIDAKGLLVLPGLVDLHVHFREPGF------- 67 (430)
T ss_pred CcEEEeccEEEcC-C-CceEecEEEECCEEEEeccCCCCC----CCCcEEECCCCEEccCeeEEEEecCCCCc-------
Confidence 4689999999998 3 337789999999999999763321 46789999999999999999999976643
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 68 -------------------------------------------------------------------------------- 67 (430)
T COG0044 68 -------------------------------------------------------------------------------- 67 (430)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
+.++.+..+.+.+.+.|+|+|.++....| +..+.+.+.
T Consensus 68 ---------------------------------------~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P---~~~~~~~~~ 105 (430)
T COG0044 68 ---------------------------------------EHKETFETGSRAAAAGGVTTVVDMPNTKP---PIDTAEALE 105 (430)
T ss_pred ---------------------------------------chhhhHHHHHHHHHcCCceEEEECCCCCC---CCCCHHHHH
Confidence 22445677888899999999999964322 222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccchhhH-HHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETWSSL-ADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
..++..+. ...+++..+......... .+.... ....|++.|.+.+. ...
T Consensus 106 ~~~~~a~~--~~~vd~~~~~~it~~~~~~~~~~~~--------~~~~g~~~F~~~~~--------------------~~~ 155 (430)
T COG0044 106 DKLERAKG--KSVVDYAFYGGLTKGNLGKLELTER--------GVEAGFKGFMDDST--------------------GAL 155 (430)
T ss_pred HHHHHhhc--cceeEEEEEEEEeccccchhhhhhh--------hhccceEEEecCCc--------------------CcC
Confidence 33333332 334555554433331111 111100 00345666665432 115
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH---------------------HHHHHHHhcCCCCCCceEeeccCCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD---------------------MYKSVVVTTGKRDQRFRIEHAQHLA 422 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~i~H~~~~~ 422 (579)
..+.+++.++.+++.|..+.+|+..+.-...... ..+....-....+.+.++.|.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~HiSt~~ 235 (430)
T COG0044 156 DDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKE 235 (430)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Confidence 6889999999999999999999974421111000 0111111111124688888876543
Q ss_pred h-hhHHHHhhC--CcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCH----
Q 008063 423 S-GTAARFGDQ--GIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADINP---- 489 (579)
Q Consensus 423 ~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~---- 489 (579)
. +.++..+.. .+++.++|+|...+.+.+.. ..+|.|.......+.+.++.|....+.||...-..+.
T Consensus 236 sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~~~ 315 (430)
T COG0044 236 SVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKRLP 315 (430)
T ss_pred HHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhccc
Confidence 3 334444444 46789999998766544433 4567776667777889999999999999975433111
Q ss_pred HHHHHHHHcccCCCCC--CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-CC---------
Q 008063 490 LCAIRTAMKRIPPGWD--NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-WE--------- 557 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~--~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~~--------- 557 (579)
+.....++...+.... ..+..+..+|+++.+++.|.|||+++|++. .|.|++|+.|||+|+|.+- +.
T Consensus 316 f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk 394 (430)
T COG0044 316 FEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSK 394 (430)
T ss_pred hhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCCCeEEchhhhccc
Confidence 1110000000000000 002245679999999999999999999987 7889999999999999872 21
Q ss_pred ----Chhhc-cCCeEEEEEECCEEeC
Q 008063 558 ----DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 558 ----~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
+++.. ....|.+|+++|++||
T Consensus 395 ~~~sPf~G~~~~g~v~~Ti~rG~~v~ 420 (430)
T COG0044 395 AKNSPFEGFELKGRVVATILRGKVVY 420 (430)
T ss_pred cCCCCcCCCEEeeeEEEEEECCEEEE
Confidence 12211 1669999999999987
No 59
>PLN02795 allantoinase
Probab=99.97 E-value=2.4e-27 Score=253.29 Aligned_cols=375 Identities=19% Similarity=0.193 Sum_probs=227.0
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+.+++|+|++|+++.+. ..++|+|+||||++|++..+.+.. .++.++||++|++|+|||||+|+|+...+.
T Consensus 43 ~~~~vi~~~~vv~~~~~--~~~~v~i~dG~I~~I~~~~~~~~~-~~~~~~ida~G~~v~PG~ID~H~H~~~~~~------ 113 (505)
T PLN02795 43 WPHFVLYSKRVVTPAGV--IPGAVEVEGGRIVSVTKEEEAPKS-QKKPHVLDYGNAVVMPGLIDVHVHLNEPGR------ 113 (505)
T ss_pred ccceEEECCEEEECCCe--EEEEEEEECCEEEEecCccccccc-cCCCEEEECCCCEEecCEEecccCcCCCCc------
Confidence 45899999999997553 468999999999999975321110 135689999999999999999999843211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 114 -------------------------------------------------------------------------------- 113 (505)
T PLN02795 114 -------------------------------------------------------------------------------- 113 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+...|+|++.++... ..|.......
T Consensus 114 ----------------------------------------~~~e~~~~~~~aa~~gGvTtv~dmp~~---~~P~~~~~~~ 150 (505)
T PLN02795 114 ----------------------------------------TEWEGFPTGTKAAAAGGITTLVDMPLN---SFPSTTSVET 150 (505)
T ss_pred ----------------------------------------cchhHHHHHHHHHHcCCcEEEECCCCC---CCCCCChHHH
Confidence 001234556677888999999998521 1122223333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccc-hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLET-WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
.+....... ....+.+..+..... .....+.+..... ....++|++.. +.. ..+...
T Consensus 151 ~~~~~~~~~-~~~~vd~~~~~~~~~~~~~~~~~l~~~~~-----~G~~g~k~f~~------------~~~----~~~~~~ 208 (505)
T PLN02795 151 LELKIEAAK-GKLYVDVGFWGGLVPENAHNASVLEELLD-----AGALGLKSFMC------------PSG----INDFPM 208 (505)
T ss_pred HHHHHHHhc-cCceeeeeceecccCcchhHHHHHHHHHH-----CCCcEEEEEec------------ccC----CCCccc
Confidence 332222211 222333322221111 1111111111000 01123454421 000 001123
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHH-------------------------HHHHHHHHHHHhcCC----CCCCc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRAND-------------------------LVLDMYKSVVVTTGK----RDQRF 413 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~-------------------------~~~~~~~~~~~~~~~----~~~~~ 413 (579)
.+.+.+.++++.++++|.++.+|+....-.. ..++..-.+....+. .+.+.
T Consensus 209 ~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~l 288 (505)
T PLN02795 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHV 288 (505)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCE
Confidence 5788999999999999999999997432111 011111112222211 15688
Q ss_pred eEeeccCC-C-hhhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 414 RIEHAQHL-A-SGTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 414 ~i~H~~~~-~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
++.|.... . -+.++..++.| +++.+||++...+.+.+. +..+|.|..+....+...+..|.+.+++||++
T Consensus 289 hi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHa 368 (505)
T PLN02795 289 HIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHS 368 (505)
T ss_pred EEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCC
Confidence 99998764 2 24455556666 888999999876555432 24556666567778889999999999999976
Q ss_pred CCCCC-------HHHH-------HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEE
Q 008063 484 VADIN-------PLCA-------IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFV 549 (579)
Q Consensus 484 ~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlv 549 (579)
..... .+.. +...+.... ....+.+++++++++++|.|||+++|++ .+|+|++|+.||||
T Consensus 369 p~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~-----~~~~~~~l~l~~~v~~~s~~pA~~~gl~-~~G~l~~G~~ADlv 442 (505)
T PLN02795 369 PSPPDLKLLEEGNFLRAWGGISSLQFVLPATW-----TAGRAYGLTLEQLARWWSERPAKLAGLD-SKGAIAPGKDADIV 442 (505)
T ss_pred CCChHHhccCcCCHhhCCCCceeHHHHHHHHH-----HHHHHcCCCHHHHHHHHHHHHHHHhCCC-CCCccCCCCccCEE
Confidence 54311 0110 111111000 0013556999999999999999999994 47999999999999
Q ss_pred EeCCCC-CC---C------------hhh-ccCCeEEEEEECCEEeC
Q 008063 550 ILSTSS-WE---D------------FAA-EVSASIEATYVSGVQAY 578 (579)
Q Consensus 550 vld~~~-~~---~------------~~~-~~~~~v~~v~v~G~~v~ 578 (579)
|+|.+- |. . +.. ....+|..|+++|++||
T Consensus 443 i~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~ 488 (505)
T PLN02795 443 VWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVF 488 (505)
T ss_pred EEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEE
Confidence 998653 11 1 100 11458999999999987
No 60
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=99.96 E-value=1.2e-27 Score=248.49 Aligned_cols=341 Identities=21% Similarity=0.231 Sum_probs=213.4
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHH--------hhccCCCeEEeCCCCeeeccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQ--------QLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~--------~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
...++++|+|++|++..+ ....+|.|+||||++|++..+.. ...+.+.++||++|++|+|||||+|+|+.
T Consensus 62 ~~~~DlVI~Na~IiD~~g--i~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~ 139 (567)
T cd00375 62 EDVLDLVITNALIIDYTG--IYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFI 139 (567)
T ss_pred cccCCEEEECeEEECCCC--cEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCC
Confidence 346789999999998764 35679999999999998753210 00124578999999999999999999973
Q ss_pred ccCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcH
Q 008063 114 PGGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANS 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~ 193 (579)
.++
T Consensus 140 ~P~----------------------------------------------------------------------------- 142 (567)
T cd00375 140 CPQ----------------------------------------------------------------------------- 142 (567)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 221
Q ss_pred HHHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCC--
Q 008063 194 VALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYY-- 271 (579)
Q Consensus 194 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~-- 271 (579)
..+.++..|+||+.+++.+.
T Consensus 143 ----------------------------------------------------------~~~aAlagGVTTvI~~G~gP~~ 164 (567)
T cd00375 143 ----------------------------------------------------------QIEEALASGITTMIGGGTGPAA 164 (567)
T ss_pred ----------------------------------------------------------HHHHHHcCCCcEEEcCCcCccc
Confidence 13458899999999974332
Q ss_pred -CCCccccc-hHHHHHHHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 272 -PGESVQLS-WEDFADVYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 272 -~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
.+..+... ...+...++.+ ....+++.++... ....+..+..+. ...++|...
T Consensus 165 gtnatp~t~g~~~l~~ml~aa---~~~pin~g~~gkg~~~~l~eL~e~~~a---------GA~GfK~~e----------- 221 (567)
T cd00375 165 GTKATTCTPGPWNIKRMLQAA---DGLPVNIGFLGKGNGSSPDALAEQIEA---------GACGLKLHE----------- 221 (567)
T ss_pred ccCCCCCCCCHHHHHHHHHHh---hcCCceEEEEecCccccHHHHHHHHHc---------CCEEEEecC-----------
Confidence 11112211 12222233222 2345666655322 112222222211 011333221
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCC---
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--- 421 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--- 421 (579)
.+ ..++..+.+.++.++++++++.+|+..-. -++..+++ ..+...++.|....
T Consensus 222 --D~----------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~aa---------~~gr~iH~~H~egaggg 280 (567)
T cd00375 222 --DW----------GATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTIAA---------IKGRTIHTYHTEGAGGG 280 (567)
T ss_pred --CC----------CCCHHHHHHHHHHHHhhCCEEEEECCCCCcchHHHHHHHH---------hcCCeEEEEecCCCCcc
Confidence 11 14788999999999999999999997422 22222222 23446677776543
Q ss_pred C-hhhHHHHhhCCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCee
Q 008063 422 A-SGTAARFGDQGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALL 476 (579)
Q Consensus 422 ~-~~~~~~~~~~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v 476 (579)
+ ++.++.....++-.+.+..... ++....++++. . +....-..|++.|+..
T Consensus 281 hapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir---~-~ti~ae~~l~d~G~~s 356 (567)
T cd00375 281 HAPDIIKVAGHPNVLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIR---A-ETIAAEDVLHDLGAIS 356 (567)
T ss_pred cchHHHHhcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcc---c-hhhccchhhhccCcEE
Confidence 2 3333333333433322211111 22222232332 2 4455567788999999
Q ss_pred eecCCCCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHH---HHHHcHHHHHhcccCCccccccCCCcc
Q 008063 477 ALGSDWPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDA---LIAHTLSAARACFLENDVGSLSPGKIA 546 (579)
Q Consensus 477 ~~gsD~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~a---l~~~T~npA~~lgl~~~~G~I~~G~~A 546 (579)
+++||+.... ...|+....+.. +....+ ...+.+..++ |+++|.|||+++|+++.+|+|++||.|
T Consensus 357 ~~~sDs~~mgr~ge~~~r~~q~a~k~~~~~g~~~~-----~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~A 431 (567)
T cd00375 357 IMSSDSQAMGRVGEVILRTWQTAHKMKAQRGPLPE-----DSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLA 431 (567)
T ss_pred EEccchhhcCccceeeechHHHHHHHHHhcCCCCc-----ccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCcc
Confidence 9999986332 678888777776 221111 1223566555 999999999999999999999999999
Q ss_pred cEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 547 DFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 547 Dlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
|||||+.+++. .++..||++|+++|.
T Consensus 432 DlVv~d~~~f~-------~~p~~vi~~G~iv~~ 457 (567)
T cd00375 432 DLVLWEPAFFG-------VKPEMVLKGGFIAYA 457 (567)
T ss_pred CEEEEcCcccC-------CCeeEEEECCEEEEe
Confidence 99999998864 367899999999973
No 61
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=99.96 E-value=8.6e-28 Score=249.72 Aligned_cols=333 Identities=19% Similarity=0.204 Sum_probs=205.1
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh--------hccCCCeEEeCCCCeeecccccccccccc
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ--------LAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~--------~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
...+++|+|++|+|+... ....+|.|+||||++|++..+... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 66 ~~~DlVItNa~IIDp~~G-i~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~ 144 (569)
T PRK13308 66 GALDFVLCNVTVIDPVLG-IVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDS 144 (569)
T ss_pred CcCCEEEECeEEEcCCCC-eEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCC
Confidence 467899999999997443 367799999999999997532110 01245689999999999999999999843
Q ss_pred cCccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHH
Q 008063 115 GGLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSV 194 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~ 194 (579)
++
T Consensus 145 Pg------------------------------------------------------------------------------ 146 (569)
T PRK13308 145 AQ------------------------------------------------------------------------------ 146 (569)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCC
Q 008063 195 ALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGE 274 (579)
Q Consensus 195 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~ 274 (579)
..+.++..|+||+.+++.+. ..
T Consensus 147 ---------------------------------------------------------~~~aALagGVTTVi~gg~gP-t~ 168 (569)
T PRK13308 147 ---------------------------------------------------------LVDHALASGITTMLGGGLGP-TV 168 (569)
T ss_pred ---------------------------------------------------------HHHHHHcCCCcEEecCCcCC-CC
Confidence 12568999999999874332 11
Q ss_pred cc-ccchHHHHHHHHHHhhcCCCeeEEEEccCccc--hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCC
Q 008063 275 SV-QLSWEDFADVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPY 351 (579)
Q Consensus 275 ~~-~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~ 351 (579)
.+ ......+...++... ..++++.++..... ..+..+..+. ...++|.. +.+
T Consensus 169 p~~t~g~~~i~~~l~aa~---~~pvN~g~~gkG~~s~~aeL~eli~a---------GA~GfKi~-------------ed~ 223 (569)
T PRK13308 169 GIDSGGPFNTGRMLQAAE---AWPVNFGFLGRGNSSKPAALIEQVEA---------GACGLKIH-------------EDW 223 (569)
T ss_pred CCCCCCHHHHHHHHHHHh---cCCccEEEEcCCcccCHHHHHHHHHC---------CCCEEeec-------------CCC
Confidence 11 112222333333332 23566665532211 2222222111 01123322 111
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC----hh
Q 008063 352 ADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR---ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA----SG 424 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~----~~ 424 (579)
..+++.+.+.++.|+++++++.+|+..-. -.+..+++ ..+...++.|..... ++
T Consensus 224 ----------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~~a---------~~gr~iH~~H~egaggghapd 284 (569)
T PRK13308 224 ----------GAMPAAIDTCLEVADEYDFQVQLHTDTLNESGFVEDTLAA---------IGGRTIHMYHTEGAGGGHAPD 284 (569)
T ss_pred ----------CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcchHHHHHHHH---------hcCCeEEEEeccCCccCchhH
Confidence 14678999999999999999999997422 22222222 234567778876432 34
Q ss_pred hHHHHhhCCcEEEecccccc------------------------cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 425 TAARFGDQGIVASMQPQHLL------------------------DDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 425 ~~~~~~~~~i~~~~~p~~~~------------------------~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
.++.....++-.+.+..... ++....++++. . +....-..|++.|+..+++|
T Consensus 285 ~l~~~~~~n~lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir---~-~ti~ae~~l~d~g~~s~~~s 360 (569)
T PRK13308 285 IIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIR---A-QTIAAEDVLHDIGAISMLGS 360 (569)
T ss_pred HHHHhCCCCccCCCCCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhcc---c-eeeccCchhhcCCcEEEEec
Confidence 44444444443332211111 12222222222 2 44455567889999999999
Q ss_pred CCCCCC------CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH-----------HHHHHcHHHHHhcccCCccccccCC
Q 008063 481 DWPVAD------INPLCAIRTAMKRIPPGWDNAWIPSERISLTD-----------ALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 481 D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~-----------al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
|+.... ...|+....+.. +...|+.++ .|+++|.|||+++|+++.+|+|++|
T Consensus 361 ds~~mgr~~e~i~r~~q~a~~~~~-----------~~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~G 429 (569)
T PRK13308 361 DSQGMGRIAEVIARTWQLASKMKD-----------QRGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPG 429 (569)
T ss_pred chHHHhHHHHHHHHHHHHHHHHhh-----------cCCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCC
Confidence 985443 123333333322 112244433 5999999999999999999999999
Q ss_pred CcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
|.||||+|+.++|. .++..||++|+++|
T Consensus 430 k~ADLVv~d~d~fg-------v~p~~ti~~G~iv~ 457 (569)
T PRK13308 430 KLADIVLWRPAFFG-------IKPELVIKGGFPAW 457 (569)
T ss_pred CcCCEEEECCcccC-------CCeeEEEECCEEEE
Confidence 99999999988764 26889999999987
No 62
>PRK09059 dihydroorotase; Validated
Probab=99.96 E-value=2.6e-27 Score=248.36 Aligned_cols=367 Identities=19% Similarity=0.218 Sum_probs=221.5
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++|+|++|+++.+.....++|+|+||||++|++..+... .+.+.++||++|++|+|||||+|+|++..+.
T Consensus 3 ~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~-~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~------- 74 (429)
T PRK09059 3 RPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQG-APEGAEIVDCAGKAVAPGLVDARVFVGEPGA------- 74 (429)
T ss_pred cCEEEEeeEEECCCCCcccceEEEEECCEEEEecCcccccc-CCCCCeEEECCCCEEeccEEecccccCCCCc-------
Confidence 46899999999987764456899999999999986432100 0235689999999999999999999843210
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 75 -------------------------------------------------------------------------------- 74 (429)
T PRK09059 75 -------------------------------------------------------------------------------- 74 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
+..+.+....+.+.+.|+|++.++....+ +..+.+.+.
T Consensus 75 ---------------------------------------~~~e~~~~~s~aa~~gGvTtv~~~p~~~p---~~~~~~~~~ 112 (429)
T PRK09059 75 ---------------------------------------EHRETIASASRAAAAGGVTSIIMMPDTDP---VIDDVALVE 112 (429)
T ss_pred ---------------------------------------hhhhhHHHHHHHHHhCCcEEEEeccCCCC---CCCCHHHHH
Confidence 01223445667789999999999864322 222222233
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc---chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE---TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
...+.+... ..+++..+.... ......+.... ...|++.+.++. ..
T Consensus 113 ~~~~~~~~~--~~vd~~~~~~~~~~~~~~~l~e~~~l---------~~~Gv~~f~~~~--------------------~~ 161 (429)
T PRK09059 113 FVKRTARDT--AIVNIHPAAAITKGLAGEEMTEFGLL---------RAAGAVAFTDGR--------------------RS 161 (429)
T ss_pred HHHHHhccc--CcccEEEEeEEecCCCCcchHHHHHH---------HhcCcEEEecCC--------------------cc
Confidence 333232222 234444332221 11111111110 011333332210 11
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHH---------------------HHHHHHHHHHHhcCCCCCCceEeeccC
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRAND---------------------LVLDMYKSVVVTTGKRDQRFRIEHAQH 420 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~H~~~ 420 (579)
..+...+.+.++.+++.|.++.+||....-.+ ....+..+...-.-..+.+.++.|...
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~ 241 (429)
T PRK09059 162 VANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISC 241 (429)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCC
Confidence 13556788999999999999999986332100 001111111111112345788888876
Q ss_pred CCh-hhHHHHhhCC--cEEEecccccccchhHH------HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-C--
Q 008063 421 LAS-GTAARFGDQG--IVASMQPQHLLDDADSA------RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI-N-- 488 (579)
Q Consensus 421 ~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~------~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-~-- 488 (579)
... +.+++.++.| +++.+||++...+.+.+ .+..+|.|..+....+.+.+..|....++||...... .
T Consensus 242 ~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~ 321 (429)
T PRK09059 242 AESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKR 321 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCc
Confidence 433 3444445555 78899999987665543 2344555655666677788888998899999754320 0
Q ss_pred -HHH-------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-----
Q 008063 489 -PLC-------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS----- 555 (579)
Q Consensus 489 -~~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~----- 555 (579)
++. .+..++.... .+..+.+++++++++++|.|||+++|++ .|+|++|+.||||++|.+-
T Consensus 322 ~~~~~~~~G~~gle~~l~~~~-----~~v~~~~l~l~~~~~~~s~nPA~~~gl~--~G~l~~G~~ADlvl~d~~~~~~v~ 394 (429)
T PRK09059 322 LPFSEAAAGAIGLETLLAAAL-----RLYHNGEVPLLRLIEALSTRPAEIFGLP--AGTLKPGAPADIIVIDLDEPWVVD 394 (429)
T ss_pred CChhhCCCCcccHHHHHHHHH-----HHHHcCCCCHHHHHHHHhHHHHHHhCCC--cCcccCCCcCCEEEECCCCCEEEC
Confidence 111 1111111000 0012446899999999999999999995 4999999999999999753
Q ss_pred ---------CCChhhc-cCCeEEEEEECCEEeCC
Q 008063 556 ---------WEDFAAE-VSASIEATYVSGVQAYP 579 (579)
Q Consensus 556 ---------~~~~~~~-~~~~v~~v~v~G~~v~~ 579 (579)
+++++.. ...+|..||++|++||.
T Consensus 395 ~~~~~s~~~~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 395 PEDLKSRSKNTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred cccCccCCCCCCCCCCEEeeEEEEEEECCEEEee
Confidence 1122221 16699999999999974
No 63
>PRK09236 dihydroorotase; Reviewed
Probab=99.96 E-value=3.5e-27 Score=249.94 Aligned_cols=157 Identities=15% Similarity=0.221 Sum_probs=100.7
Q ss_pred CCCceEeeccCCChhhHHHHh---h--CCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeee
Q 008063 410 DQRFRIEHAQHLASGTAARFG---D--QGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLAL 478 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~---~--~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~ 478 (579)
+.+.++.|... .+.++.++ . .++++.+||++...+.+.+.. ..++.|..+...++.+++++|+++++
T Consensus 229 ~~~~hi~h~st--~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i 306 (444)
T PRK09236 229 GTRLHVLHIST--AKELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVI 306 (444)
T ss_pred CCCEEEEeCCC--HHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCCCCcEE
Confidence 34556666653 33333222 2 245667777776655544322 12233333566789999999999999
Q ss_pred cCCCCCCCCC--------------HHHHH-HHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 479 GSDWPVADIN--------------PLCAI-RTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 479 gsD~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
|||++..... .++.+ ...+.. ..+.+++++++++++|.|||++||+++ +|+|++|
T Consensus 307 gtDh~p~~~~~k~~~~~~~~~G~~~~e~~l~~l~~~---------v~~~~~~~~~~~~~~t~~pA~~lgl~~-~G~l~~G 376 (444)
T PRK09236 307 ATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLEL---------VHEGKLSLEKVVEKTSHAPAILFDIKE-RGFIREG 376 (444)
T ss_pred ECCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHH---------HHhcCCCHHHHHHHHHHhHHHhcCCCC-CCccccC
Confidence 9998644211 11111 111110 023469999999999999999999964 7999999
Q ss_pred CcccEEEeCCC-CCC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 544 KIADFVILSTS-SWE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 544 ~~ADlvvld~~-~~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+.|||||+|.+ ++. +..++ ...+|..||++|++||
T Consensus 377 ~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~ 426 (444)
T PRK09236 377 YWADLVLVDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVY 426 (444)
T ss_pred CcCCEEEEcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEE
Confidence 99999999965 322 21111 1458999999999987
No 64
>PRK06846 putative deaminase; Validated
Probab=99.96 E-value=3.3e-27 Score=247.84 Aligned_cols=187 Identities=18% Similarity=0.087 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCC---ChhhHH----HHhhCCc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL---ASGTAA----RFGDQGI 434 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~---~~~~~~----~~~~~~i 434 (579)
.+++.+.++++.|+++|+++++|+.... +....++...+...+.+..+ +..+.|+..+ ++++++ ++++.|+
T Consensus 203 ~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~ 281 (410)
T PRK06846 203 AIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKG-KVTISHAFALGDLNEEEVEELAERLAAQGI 281 (410)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCC-CEEEEecchhhcCCHHHHHHHHHHHHHcCC
Confidence 5678999999999999999999987432 22333333344444556555 8999999864 566644 6899999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNAW 508 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
.+++++.. + ...+|++.|.++|+++++|||++.. ..+++.+++.+......
T Consensus 282 ~v~~~~~~------------~-----~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~~~d~~~~~~~~~~~~~~------ 338 (410)
T PRK06846 282 SITSTVPI------------G-----RLHMPIPLLHDKGVKVSLGTDSVIDHWSPFGTGDMLEKANLLAELYRW------ 338 (410)
T ss_pred eEEEeCCC------------C-----CCCCCHHHHHhCCCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHhcC------
Confidence 88765331 1 4466899999999999999997632 24688888766543211
Q ss_pred CCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-ChhhccCCeEEEEEECCEEeC
Q 008063 509 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 509 ~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~~~~v~~v~v~G~~v~ 578 (579)
... -...++++++|.+ |+.++.++.+|+|+|||.|||||+|.++.. .+. ...++..||++|++||
T Consensus 339 ~~~--~~~~~~l~~~T~~-a~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~~~--~~~~v~~v~~~G~~v~ 404 (410)
T PRK06846 339 SDE--RSLSRSLALATGG-VLPLNDEGERVWPKVGDEASFVLVDASCSAEAVA--RQSPRTAVFHKGQLVA 404 (410)
T ss_pred CCH--HHHHHHHHHHcCC-ccccccCCCccCCCCCCcccEEEEeCCChHHHHH--hcCCceEEEECCEEEe
Confidence 111 2456899999988 566888777899999999999999987632 221 2358999999999997
No 65
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=99.96 E-value=1.8e-27 Score=245.36 Aligned_cols=168 Identities=23% Similarity=0.216 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc-
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ- 441 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~- 441 (579)
..+.++++++.|++.|+++..|.. +...+.+..+ .| ...+.| .++.+..+.+.+.|+.+..+..
T Consensus 207 ~~e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~~--------~G----v~~~E~--~~t~e~a~~~~~~G~~v~~~~p~ 272 (376)
T TIGR02318 207 GLANRSEIAALARARGIPLASHDDDTPEHVAEAHD--------LG----VTISEF--PTTLEAAKEARSLGMQILMGAPN 272 (376)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHH--------CC----CChhcc--CCCHHHHHHHHHcCCeEEECCcc
Confidence 578899999999999999999994 3333332221 12 122333 3688889999999999877632
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALI 521 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 521 (579)
.... +.. ....++..+++.|+.++++||.. +.+.+..+..... ...++++.++++
T Consensus 273 ~~r~---------~~~---~~~~~l~~~~~~G~~~~l~SD~~--p~~~l~~~~~~~~-----------~~~gl~~~~al~ 327 (376)
T TIGR02318 273 IVRG---------GSH---SGNLSARELAHEGLLDVLASDYV--PASLLLAAFQLAD-----------DVEGIPLPQAVK 327 (376)
T ss_pred cccc---------ccc---cchHHHHHHHHCCCcEEEEcCCC--cHHHHHHHHHHHH-----------hhcCCCHHHHHH
Confidence 2110 000 12346789999999999999983 2333333322211 123589999999
Q ss_pred HHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 522 ~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++|.|||+.+|+++ +|+|++|+.|||+++|... . ...+..||++|++||
T Consensus 328 ~~T~npA~~lgl~~-~G~I~~G~~ADlvvvd~~~--~-----~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 328 MVTKNPARAVGLSD-RGSIAPGKRADLVRVHRVD--G-----VPRIRAVWRAGRRVY 376 (376)
T ss_pred HHhHHHHHHcCCCC-CCcCCCCCcccEEEEcCCC--C-----CccceEEEECCEEeC
Confidence 99999999999974 7999999999999999742 1 237899999999987
No 66
>PLN02303 urease
Probab=99.96 E-value=3.5e-27 Score=252.59 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHH----HHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRA---NDLVLDMYKS----VVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~~~~~~~~----~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
.+++.+.+.++.|+++|+++++|+....+ .+..++.+.. .....|..+. | .++.++.....++-
T Consensus 494 vTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~gg-----h----apdi~~~~~~~nvl 564 (837)
T PLN02303 494 TTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGGG-----H----APDIIKVCGVKNVL 564 (837)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCCC-----C----CcHHHHhcCCCCcc
Confidence 57889999999999999999999764322 4444444432 1222222211 1 12222222222221
Q ss_pred EE---------------------eccc---ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-----
Q 008063 436 AS---------------------MQPQ---HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD----- 486 (579)
Q Consensus 436 ~~---------------------~~p~---~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~----- 486 (579)
.+ +|.+ ...++....++++.+ +....-..|++.|+..+++||+....
T Consensus 565 psstnpt~p~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~----~tiaaed~l~d~G~~s~~~SDs~amgr~ge~ 640 (837)
T PLN02303 565 PSSTNPTRPYTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRA----ETIAAEDILHDMGAISIISSDSQAMGRIGEV 640 (837)
T ss_pred CCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccc----hhhccchhhhccCCEEEEeccchhhCcccce
Confidence 11 1111 112233333333332 44556677899999999999987443
Q ss_pred -CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCC
Q 008063 487 -INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSA 565 (579)
Q Consensus 487 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~ 565 (579)
...|+....+..... .........-..+.+++|+++|.|||+++|+++.+|+|++||.||||||+.++|. .
T Consensus 641 i~r~~q~A~k~~~~~g-~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~fg-------~ 712 (837)
T PLN02303 641 ITRTWQTAHKMKSQRG-ALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFFG-------A 712 (837)
T ss_pred eeehHHHHHHHHHhcC-CCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccccC-------C
Confidence 678888777743211 1100111234578899999999999999999999999999999999999988764 3
Q ss_pred eEEEEEECCEEeCC
Q 008063 566 SIEATYVSGVQAYP 579 (579)
Q Consensus 566 ~v~~v~v~G~~v~~ 579 (579)
++..||++|++||.
T Consensus 713 ~~~~vi~~G~ivy~ 726 (837)
T PLN02303 713 KPEMVIKGGQIAWA 726 (837)
T ss_pred CeeEEEECCEEEEc
Confidence 78999999999984
No 67
>PRK08044 allantoinase; Provisional
Probab=99.96 E-value=1.9e-26 Score=243.79 Aligned_cols=365 Identities=20% Similarity=0.225 Sum_probs=225.2
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
++++|+|++|++.++. ..++|+|+||+|++|++..+ .+.++||++|++|+|||||+|+|+..++.
T Consensus 3 ~~~~i~n~~vi~~~~~--~~~~i~I~dg~I~~i~~~~~------~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~------- 67 (449)
T PRK08044 3 FDLIIKNGTVILENEA--RVVDIAVKGGKIAAIGQDLG------DAKEVMDASGLVVSPGMVDAHTHISEPGR------- 67 (449)
T ss_pred ceEEEECcEEEcCCCC--EEEEEEEECCEEEEecCCCC------CCCeEEECCCCEEcCCeeccccccCCCCc-------
Confidence 4789999999986543 45799999999999986421 35689999999999999999999854321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 68 -------------------------------------------------------------------------------- 67 (449)
T PRK08044 68 -------------------------------------------------------------------------------- 67 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
...+.+....+.+.+.|+|++.+++.. ..|.....+.+
T Consensus 68 ---------------------------------------~~~e~~~~~~~aa~~gGvTtv~d~~~~---~~p~~~~~~~~ 105 (449)
T PRK08044 68 ---------------------------------------SHWEGYETGTRAAAKGGITTMIEMPLN---QLPATVDRASI 105 (449)
T ss_pred ---------------------------------------cccccHHHHHHHHHhCCceEEECCccC---CCCCCCcHHHH
Confidence 002244567788999999999998621 11222222333
Q ss_pred H-HHHHHhhcCCCeeEEEEccCc--cchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 285 D-VYQWASYSEKMKIRVCLFFPL--ETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 285 ~-~~~~~~~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
+ ..+..+ ....+++..+... .+..+..+... ....++|++.... .+ .....+..
T Consensus 106 ~~~~~~~~--~~s~vd~~~~~~~~~~~~~ei~~l~~---------~gv~~fk~~~~~~---------~~---~~~~~~~~ 162 (449)
T PRK08044 106 ELKFDAAK--GKLTIDAAQLGGLVSYNLDRLHELDE---------VGVVGFKCFVATC---------GD---RGIDNDFR 162 (449)
T ss_pred HHHHHHhc--cCCeeeEEEEeeeCCCCHHHHHHHHH---------cCceEEEEEeccc---------Cc---ccccCCcc
Confidence 3 333222 2333444433222 12223323221 1133566553100 00 00000112
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHH----H--------------------HHHHHHHhcCCCCCCceEee
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDLVL----D--------------------MYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~i~H 417 (579)
..+...+.+.++.+++.|.++.+|+....-.+... + ...+.....-..+.+.++.|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~g~~vhi~H 242 (449)
T PRK08044 163 DVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCH 242 (449)
T ss_pred CcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 24567888899999999999999996432211110 0 01111111111245778888
Q ss_pred ccCCC-hhhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-
Q 008063 418 AQHLA-SGTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI- 487 (579)
Q Consensus 418 ~~~~~-~~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~- 487 (579)
+.... -+.+.+.++.| +++.+||++...+.+.+.. ..+|.|..+....+.+.+..|.+.+++||....+.
T Consensus 243 iSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~ 322 (449)
T PRK08044 243 ISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPE 322 (449)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChH
Confidence 87422 24444455554 7888999998866665432 33556655667778888899999999999765431
Q ss_pred ----CHHH----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 488 ----NPLC----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 488 ----~~~~----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
+.+. .+..++.. +..+.+++++++++++|.|||++||+++ +|+|++|+.|||+|+|.
T Consensus 323 ~K~~~~~~~~~g~~g~e~~l~~~~~~--------~v~~~~l~~~~~v~~~s~npA~~lgl~~-~G~i~~G~~ADlvi~d~ 393 (449)
T PRK08044 323 MKAGNIMEAWGGIAGLQNCMDVMFDE--------AVQKRGMSLPMFGKLMATNAADIFGLQQ-KGRIAPGKDADFVFIQP 393 (449)
T ss_pred HccCChhhCCCCceEHHHHHHHHHHH--------HHHcCCCCHHHHHHHHHHhHHHHhCCCC-CCcCCCCCccCEEEECC
Confidence 1110 11111110 1134569999999999999999999965 69999999999999997
Q ss_pred CC-CC-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 554 SS-WE-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 554 ~~-~~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
+- |. ..+.+ ...+|..||++|++||
T Consensus 394 ~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~~G~~v~ 433 (449)
T PRK08044 394 NSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIY 433 (449)
T ss_pred CCcEEECHHHccccCCCCCCCCCEEeeeEEEEEECCEEEE
Confidence 63 22 11111 1568999999999987
No 68
>PRK07575 dihydroorotase; Provisional
Probab=99.96 E-value=8e-27 Score=246.30 Aligned_cols=358 Identities=21% Similarity=0.278 Sum_probs=212.6
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
+|+++|+|++|+++.+. ...++|+|+||||++|++..+. +.+.++||++|++|+|||||+|+|+...+.
T Consensus 2 ~~~~~i~~~~i~~~~~~-~~~~~I~I~dg~I~~ig~~~~~----~~~~~vid~~g~~v~PG~ID~H~H~~~~~~------ 70 (438)
T PRK07575 2 MMSLLIRNARILLPSGE-LLLGDVLVEDGKIVAIAPEISA----TAVDTVIDAEGLTLLPGVIDPQVHFREPGL------ 70 (438)
T ss_pred cceEEEECCEEECCCCC-EEeeeEEEECCEEEEecCCCCC----CCCCeEEECCCCEEcccEEEeeeccCCCCC------
Confidence 35689999999987553 3567999999999999874321 123589999999999999999999743211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 71 -------------------------------------------------------------------------------- 70 (438)
T PRK07575 71 -------------------------------------------------------------------------------- 70 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+.+.|+|++.++.... .+..+.+.+
T Consensus 71 ----------------------------------------~~~e~~~~~~~aa~~gGvTt~~dmp~~~---p~~~~~~~~ 107 (438)
T PRK07575 71 ----------------------------------------EHKEDLFTASRACAKGGVTSFLEMPNTK---PLTTTQAAL 107 (438)
T ss_pred ----------------------------------------cCcchHHHHHHHHHhCCEEEEEECCCCC---CCCCcHHHH
Confidence 0012334456678999999999986322 222333333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
....+.+. ....+++.++..... ....+.... ....|++.+...... + ....
T Consensus 108 ~~~~~~a~--~~~~v~~~~~~~~~~-~~l~~l~~~--------~~~~g~~~f~~~~~~--------~---------~~~~ 159 (438)
T PRK07575 108 DDKLARAA--EKCVVNYGFFIGATP-DNLPELLTA--------NPTCGIKIFMGSSHG--------P---------LLVD 159 (438)
T ss_pred HHHHHHhc--cCcEEEEEEEccccc-cCHHHHHHh--------hCCeEEEEEEeeCCC--------C---------cccC
Confidence 33333332 234566555433221 112222111 112245554210000 0 0001
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHH--H--------------------HHHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRAND--L--------------------VLDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~--~--------------------~~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
+...+.+++ .+.+.++.+|+....-+. . ...++.+...-.-..+.++++.|..
T Consensus 160 ~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~lhi~HiS-- 234 (438)
T PRK07575 160 EEAALERIF---AEGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRRLHILHLS-- 234 (438)
T ss_pred cHHHHHHHH---HhCCCEEEEeCcChHHHHhhhHhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCCEEEEECC--
Confidence 223334332 356788888875322000 0 0011111111111124578888887
Q ss_pred ChhhHHHHhh---CCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-----
Q 008063 422 ASGTAARFGD---QGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI----- 487 (579)
Q Consensus 422 ~~~~~~~~~~---~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~----- 487 (579)
+.+.++.+++ ..+++.+||+|...+.+.+.. ..++.|..+...++.+++++|++++++||+.....
T Consensus 235 t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~~ 314 (438)
T PRK07575 235 TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQ 314 (438)
T ss_pred CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHccC
Confidence 4544544433 247888999997765555432 23556655677889999999999999999765431
Q ss_pred ------CH--HHHHH--HHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-C
Q 008063 488 ------NP--LCAIR--TAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-W 556 (579)
Q Consensus 488 ------~~--~~~~~--~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~ 556 (579)
.. ..++. ..+.. ..+.+++++++++++|.|||++||+++ +|+|++|+.|||||+|.+. +
T Consensus 315 ~~~~~~~G~~g~e~~l~~l~~~---------~~~~~lsl~~~~~~~s~npAk~lgl~~-~G~L~~G~~ADlvi~D~~~~~ 384 (438)
T PRK07575 315 PYPNSPSGMPGVETSLPLMLTA---------AMRGKCTVAQVVRWMSTAVARAYGIPN-KGRIAPGYDADLVLVDLNTYR 384 (438)
T ss_pred CcccCCCCcccHHHHHHHHHHH---------HhcCCCCHHHHHHHHhhhHHHHcCCCC-CCccCCCCcCCEEEEcCCCCE
Confidence 10 11111 11111 123469999999999999999999954 5999999999999999764 3
Q ss_pred C-Chhhc-------------cCCeEEEEEECCEEeC
Q 008063 557 E-DFAAE-------------VSASIEATYVSGVQAY 578 (579)
Q Consensus 557 ~-~~~~~-------------~~~~v~~v~v~G~~v~ 578 (579)
. ....+ ...++..||++|++||
T Consensus 385 ~v~~~~~~s~~~~sp~~g~~~~G~v~~tiv~G~~v~ 420 (438)
T PRK07575 385 PVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVF 420 (438)
T ss_pred EEchHHccccCCCCCCCCCEEeeEEEEEEECCEEEE
Confidence 2 21111 1346899999999986
No 69
>PRK09060 dihydroorotase; Validated
Probab=99.96 E-value=1.5e-26 Score=244.53 Aligned_cols=361 Identities=24% Similarity=0.293 Sum_probs=214.9
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVK 123 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~ 123 (579)
.++++|+|++|+++.+. ..++|+|+||||++|++..+ .++.++||++|++|+|||||+|+|+..++.
T Consensus 4 ~~d~~i~~~~v~~~~~~--~~~~i~i~~g~I~~i~~~~~-----~~~~~~iD~~G~~v~PG~ID~HvH~~~~~~------ 70 (444)
T PRK09060 4 TFDLILKGGTVVNPDGE--GRADIGIRDGRIAAIGDLSG-----ASAGEVIDCRGLHVLPGVIDSQVHFREPGL------ 70 (444)
T ss_pred cCcEEEECCEEECCCCC--eeeEEEEECCEEEEecCCCC-----CCCceEEECCCCEEccCEEeccccccCCCC------
Confidence 36789999999997653 45799999999999986432 134689999999999999999999753211
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCC
Q 008063 124 LRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
T Consensus 71 -------------------------------------------------------------------------------- 70 (444)
T PRK09060 71 -------------------------------------------------------------------------------- 70 (444)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
...+.+....+.+.+.|+|++.++....+. ..+.+.+
T Consensus 71 ----------------------------------------~~~e~~~t~~~aa~~gGvTtv~~~p~~~p~---~~~~~~~ 107 (444)
T PRK09060 71 ----------------------------------------EHKEDLETGSRAAVLGGVTAVFEMPNTNPL---TTTAEAL 107 (444)
T ss_pred ----------------------------------------CccchHHHHHHHHHhCCcEEEEECCCCCCC---CChHHHH
Confidence 001234556777899999999998643322 2223333
Q ss_pred HHHHHHHhhcCCCeeEEEEccCcc--chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCccc
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLE--TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQ 361 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 361 (579)
....+... ....+++..+.... +..+..+.... ....+++.+.+.... ...
T Consensus 108 ~~~~~~a~--~~~~~d~~~~~~~~~~~~~~l~el~~~--------~gv~g~k~fm~~~~~-----------------~~~ 160 (444)
T PRK09060 108 ADKLARAR--HRMHCDFAFYVGGTRDNADELAELERL--------PGCAGIKVFMGSSTG-----------------DLL 160 (444)
T ss_pred HHHHHHhc--ccceeeEEEEeccCCCCHHHHHHHHhh--------cCceEEEEEeccCCC-----------------Ccc
Confidence 33333322 22455555443222 22222222211 123455655421100 001
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------HHHHHHHHHHhcCCCCCCceEeeccC
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------VLDMYKSVVVTTGKRDQRFRIEHAQH 420 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~H~~~ 420 (579)
..+...+.++++. .+..+.+|+....-++. ......+.....-..+.+.++.|...
T Consensus 161 ~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~~~~~~~g~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lhi~h~st 237 (444)
T PRK09060 161 VEDDEGLRRILRN---GRRRAAFHSEDEYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLARETGRRIHVLHVST 237 (444)
T ss_pred cCCHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 1244556665544 58889999853321110 00111111111112345788889876
Q ss_pred CChhhHHHHhh--CCcEEEecccccccchhH-HH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC---
Q 008063 421 LASGTAARFGD--QGIVASMQPQHLLDDADS-AR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN--- 488 (579)
Q Consensus 421 ~~~~~~~~~~~--~~i~~~~~p~~~~~~~~~-~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~--- 488 (579)
.+.++.++. ..+++.+||++.....+. +. +..+|.|..+....+.+.+++|+...++||.......
T Consensus 238 --~~~v~~i~~~~~~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k~ 315 (444)
T PRK09060 238 --AEEIDFLADHKDVATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA 315 (444)
T ss_pred --HHHHHHHHHhCCCeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHhc
Confidence 444444433 348889999887654443 21 2344555546666788899999999999997543211
Q ss_pred -HH-------HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC-C---
Q 008063 489 -PL-------CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS-W--- 556 (579)
Q Consensus 489 -~~-------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~-~--- 556 (579)
++ ..+..++.... ....+.+++++++++++|.|||+.+|+++ +|+|++|+.|||||+|.+. +
T Consensus 316 ~~~~~~~~G~~g~e~~~~l~~-----~~v~~g~l~~~~~~~~~s~~pa~~~gl~~-~G~l~~G~~ADlvl~d~~~~~~v~ 389 (444)
T PRK09060 316 KPYPASPSGMTGVQTLVPIML-----DHVNAGRLSLERFVDLTSAGPARIFGIAG-KGRIAVGYDADFTIVDLKRRETIT 389 (444)
T ss_pred CCcccCCCCcccHHHHHHHHH-----HHHHcCCCCHHHHHHHHhHhHHHHhCCCC-CCcccCCCcCCEEEEcCCCCEEEC
Confidence 00 00111000000 00123459999999999999999999954 7999999999999999663 2
Q ss_pred ----------CChhhc-cCCeEEEEEECCEEeC
Q 008063 557 ----------EDFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 557 ----------~~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
+++... ...++..||++|++||
T Consensus 390 ~~~~~s~~~~sp~~g~~l~g~~~~tiv~G~~v~ 422 (444)
T PRK09060 390 NEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVM 422 (444)
T ss_pred hHHhcccCCCCCCCCCEEeeeEEEEEECCEEEE
Confidence 122221 1457899999999986
No 70
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.96 E-value=6.2e-27 Score=240.78 Aligned_cols=177 Identities=18% Similarity=0.166 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHCC----Ce--EEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC------hhhHHHH
Q 008063 363 MELESLLSMTMASDKSG----LQ--VAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA------SGTAARF 429 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g----~~--i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~------~~~~~~~ 429 (579)
.+.++++++...++..| .+ +++|.- +....+.+++.+++. . ...+..|..+++ ++.++.+
T Consensus 168 ~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~----d---i~~~~f~pth~~r~~~l~~~~i~~~ 240 (389)
T TIGR01975 168 PTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENT----D---VPITQFLPTHINRNVPLFEAGLEFA 240 (389)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhc----C---CChhheecCccCCCHHHHHHHHHHH
Confidence 57899999999999999 88 888874 445556666655442 1 111222222222 3344444
Q ss_pred hhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCe---eeecCCCCCCC--C---------------CH
Q 008063 430 GDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNAL---LALGSDWPVAD--I---------------NP 489 (579)
Q Consensus 430 ~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~---v~~gsD~~~~~--~---------------~~ 489 (579)
++ +..+++.-..... .+..... .....++.++++|++ ++++||...+. . +.
T Consensus 241 ~~-gg~iDv~~~~~~~-------~l~~~~~-~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl 311 (389)
T TIGR01975 241 KK-GGTIDLTSSIDPQ-------FRKEGEV-APAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETL 311 (389)
T ss_pred Hh-CCcEEEeCCCCcc-------chhcccc-ChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHH
Confidence 44 5555554222211 0110000 222246899999996 59999975322 1 12
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEE
Q 008063 490 LCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEA 569 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~ 569 (579)
+..++.++. ..++++++||+++|.|||+.||++ .+|+|++|+.|||+|||.+. ++..
T Consensus 312 ~~~~~~lv~------------~g~ls~~eal~~~T~npA~~Lgl~-~~G~I~~G~~ADlvild~~~----------~i~~ 368 (389)
T TIGR01975 312 FEEVREAVK------------DGDVPLEKALRVITSNVAGVLNLT-GKGEISPGNDADLVVLDPDL----------RIHS 368 (389)
T ss_pred HHHHHHHHH------------hCCCCHHHHHHHHHHHHHHHhCCC-CCCeECCCCcCCEEEEcCCC----------CEEE
Confidence 445554443 234999999999999999999998 58999999999999999772 5677
Q ss_pred EEECCEEeC
Q 008063 570 TYVSGVQAY 578 (579)
Q Consensus 570 v~v~G~~v~ 578 (579)
||.+|++++
T Consensus 369 v~~~G~~v~ 377 (389)
T TIGR01975 369 VIARGKLMV 377 (389)
T ss_pred EEECCEEEE
Confidence 777777654
No 71
>PRK02382 dihydroorotase; Provisional
Probab=99.96 E-value=6.6e-26 Score=240.12 Aligned_cols=356 Identities=21% Similarity=0.284 Sum_probs=217.1
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++|+|++|++..+ ...++|+|+||||++|++..+. +++.++||++|++|+|||||+|+|+..++.
T Consensus 2 ~dl~i~n~~v~~~~~--~~~~~v~I~dg~I~~i~~~~~~----~~~~~~id~~g~~v~PG~ID~H~H~~~~g~------- 68 (443)
T PRK02382 2 RDALLKDGRVYYNNS--LQPRDVRIDGGKITAVGKDLDG----SSSEEVIDARGMLLLPGGIDVHVHFREPGY------- 68 (443)
T ss_pred ceEEEECCEEEeCCC--ceEEEEEEECCEEEEecCCCCC----CCCCeEEECCCCEEcCCEeeeeeeccCCCC-------
Confidence 468999999998543 3567999999999999764221 134689999999999999999999754321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
.
T Consensus 69 ----------------------------------------~--------------------------------------- 69 (443)
T PRK02382 69 ----------------------------------------T--------------------------------------- 69 (443)
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
..+.+....+.+.+.|+|++.++....+.. ...+.+.
T Consensus 70 ----------------------------------------~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~---~~~~~~~ 106 (443)
T PRK02382 70 ----------------------------------------HKETWYTGSRSAAAGGVTTVVDQPNTDPPT---VDGESFD 106 (443)
T ss_pred ----------------------------------------chhhHHHHHHHHHhCCcEEEEECCCCCCCC---ChHHHHH
Confidence 012334567789999999999986432221 1222222
Q ss_pred HHHHHHhhcCCCeeEEEEccCcc-chhhHHHHHHhcCCCCCCceEEceE-EEEEcCccCCCcccccCCCCCCCCCCcccC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLE-TWSSLADLINKTGHVLSDWVYLGGV-KAFADGSLGSNSALFHEPYADEPHNYGLQV 362 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 362 (579)
...+.... ...+.+....... +..+..++... + ..++ |++.... . +...
T Consensus 107 ~~~~~a~~--~s~v~~~~~~~~~~~~~~l~~l~~~-g--------v~~~gkv~~~~~------------~------~~~~ 157 (443)
T PRK02382 107 EKAELAAR--KSIVDFGINGGVTGNWDPLESLWER-G--------VFALGEIFMADS------------T------GGMG 157 (443)
T ss_pred HHHHHhCc--CceEEEEEEeeeccchhhHHHHHhc-C--------ccceeEEEEEec------------C------CCcc
Confidence 22222222 1233333222111 12222222211 0 0111 2221000 0 0011
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHH----------------------HHHHHHhcCCCCCCceEeeccC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDM----------------------YKSVVVTTGKRDQRFRIEHAQH 420 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~i~H~~~ 420 (579)
.+++.+.++++.+++.|.++.+|+....-.+..... ..+.....-..+.+.++.|...
T Consensus 158 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~ss 237 (443)
T PRK02382 158 IDEELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHIST 237 (443)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 467889999999999999999998643211111000 0011000011245777888754
Q ss_pred CChhhHHHHhhCCcEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC------
Q 008063 421 LASGTAARFGDQGIVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADIN------ 488 (579)
Q Consensus 421 ~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~------ 488 (579)
.+.++.+++..+++.+||++...+.+.+.. ..+|.|..+....+.+.++.|...+++||....+..
T Consensus 238 --~~~~~~i~~~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~~~~ 315 (443)
T PRK02382 238 --PEGVDAARREGITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDADI 315 (443)
T ss_pred --HHHHHHHHHCCcEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhcCCh
Confidence 455566666668999999988766554422 345555545566677788899999999997644210
Q ss_pred ------------HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC
Q 008063 489 ------------PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW 556 (579)
Q Consensus 489 ------------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~ 556 (579)
.+..+..++ .+.+++++++++++|.|||+.+|++ .+|+|++|+.|||+|+|.+..
T Consensus 316 ~~~~~G~~g~e~~~~~~~~~~------------~~~~~~l~~~~~~~t~~pA~~~g~~-~~G~l~~G~~AD~vi~d~~~~ 382 (443)
T PRK02382 316 WDAPSGVPGVETMLPLLLAAV------------RKNRLPLERVRDVTAANPARIFGLD-GKGRIAEGYDADLVLVDPDAA 382 (443)
T ss_pred hhCCCCcccHHHHHHHHHHHH------------HcCCCCHHHHHHHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCc
Confidence 111111111 3456999999999999999999996 479999999999999997532
Q ss_pred -C-Chhhc------------cCCeEEEEEECCEEeCC
Q 008063 557 -E-DFAAE------------VSASIEATYVSGVQAYP 579 (579)
Q Consensus 557 -~-~~~~~------------~~~~v~~v~v~G~~v~~ 579 (579)
. ..+.+ ....+..||++|++||.
T Consensus 383 ~~~~~~~~~s~~~~sp~~g~~~~~v~~tiv~G~~v~~ 419 (443)
T PRK02382 383 REIRGDDLHSKAGWTPFEGMEGVFPELTMVRGTVVWD 419 (443)
T ss_pred EEEcHHHhcccCCCCCcCCCEeceEEEEEECCEEEEE
Confidence 2 11111 12377899999999873
No 72
>PRK07369 dihydroorotase; Provisional
Probab=99.95 E-value=2.2e-26 Score=240.30 Aligned_cols=333 Identities=17% Similarity=0.151 Sum_probs=208.9
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++|+|++|+++.+.....++|+|+||||++|++..... +.+.++||++|++|+|||||+|+|+..++.
T Consensus 2 ~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~---~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~------- 71 (418)
T PRK07369 2 SNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPI---PPDTQIIDASGLILGPGLVDLYSHSGEPGF------- 71 (418)
T ss_pred CCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccC---CCCCEEEECCCCEEecCEEecccccCCCCc-------
Confidence 4689999999987655446789999999999998643211 245789999999999999999999754321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 72 -------------------------------------------------------------------------------- 71 (418)
T PRK07369 72 -------------------------------------------------------------------------------- 71 (418)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
..++.+....+.+++.|+|++.++... .|.....+..
T Consensus 72 ---------------------------------------~~~e~~~s~~~aa~~GGvTtv~~~pn~----~P~~~~~~~~ 108 (418)
T PRK07369 72 ---------------------------------------EERETLASLAAAAAAGGFTRVAILPDT----FPPLDNPATL 108 (418)
T ss_pred ---------------------------------------CCCccHHHHHHHHHhCCceEEEECCCC----CCCCCCHHHH
Confidence 001133446778999999999998643 2222333333
Q ss_pred HHHHHHhhcCCCeeEEEEccCccc------hhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLET------WSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNY 358 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~ 358 (579)
..++...... ..+++..+..... ..+..+..+ .|+..+.++
T Consensus 109 ~~~~~~~~~~-~~vd~~~~~~~~~~~~~~~~~ei~~l~~------------~Gv~~f~~~-------------------- 155 (418)
T PRK07369 109 ARLQQQAQQI-PPVQLHFWGALTLGGQGKQLTELAELAA------------AGVVGFTDG-------------------- 155 (418)
T ss_pred HHHHHHhccc-CceeEEEEEEEeeCCCCccHhhHHHHHH------------CCCEEEECC--------------------
Confidence 3333322222 2344444333211 222222211 122222110
Q ss_pred cccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHH---------------------HHHHHHHHHHHhcCCCCCCceEee
Q 008063 359 GLQVMELESLLSMTMASDKSGLQVAIHAIGDRAND---------------------LVLDMYKSVVVTTGKRDQRFRIEH 417 (579)
Q Consensus 359 ~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~H 417 (579)
....+.+.+.+.++.+++.|.++.+|+....-+. .......+...-.-..+.+.++.|
T Consensus 156 -~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~H 234 (418)
T PRK07369 156 -QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMR 234 (418)
T ss_pred -CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEe
Confidence 1113566888999999999999999996322100 000011111111112256888999
Q ss_pred ccCCCh-hhHHHHhhC--CcEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC
Q 008063 418 AQHLAS-GTAARFGDQ--GIVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN 488 (579)
Q Consensus 418 ~~~~~~-~~~~~~~~~--~i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~ 488 (579)
...-.. +.++..++. .+++.+||++...+.+.+. +..+|.|..+....+...++.|....++||.+.....
T Consensus 235 vSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~ 314 (418)
T PRK07369 235 ISTARSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYE 314 (418)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHH
Confidence 876332 344444544 4788999999886665543 3346677667777888999999999999997644310
Q ss_pred ----HHHH-----------HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCC
Q 008063 489 ----PLCA-----------IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 553 (579)
Q Consensus 489 ----~~~~-----------~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~ 553 (579)
.|.. +..++.. +....+++++++++++|.|||+.||++ .|+|++|++|||+++|.
T Consensus 315 ~K~~~~~~~~~G~~G~e~~l~~~~~~--------~v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi~d~ 384 (418)
T PRK07369 315 EKTVAFAEAPPGAIGLELALPLLWQN--------LVETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELILFDP 384 (418)
T ss_pred HccCCHhHCCCCceeHHHHHHHHHHH--------HHHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEEEcC
Confidence 1111 1111110 113456999999999999999999996 49999999999999997
Q ss_pred C
Q 008063 554 S 554 (579)
Q Consensus 554 ~ 554 (579)
+
T Consensus 385 ~ 385 (418)
T PRK07369 385 Q 385 (418)
T ss_pred C
Confidence 6
No 73
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.95 E-value=7.8e-27 Score=240.16 Aligned_cols=177 Identities=26% Similarity=0.291 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccc
Q 008063 367 SLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDD 446 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 446 (579)
.++.++...+. .+++.+|+.+...+..+++..++. +.+..+.|+... .+.++++++.++.++++|.++...
T Consensus 181 ~l~~l~~~~~~-~~~v~vHa~~~~~i~~~l~~~~e~-------g~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~ 251 (359)
T cd01309 181 KLEALLPVLKG-EIPVRIHAHRADDILTAIRIAKEF-------GIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPK 251 (359)
T ss_pred cHHHHHHHHcC-CeeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEECchhH-HHHHHHHHHcCCCEEECccccccc
Confidence 34555555443 389999999888777777766553 235789999887 778899999999999999876532
Q ss_pred hhHHHHhhChhhhhhhhhhHHHHHHCC-CeeeecCCCCCCCC-CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHc
Q 008063 447 ADSARKKLGVDRAERESYLFQSLLANN-ALLALGSDWPVADI-NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHT 524 (579)
Q Consensus 447 ~~~~~~~l~~~~~~~~~~~l~~l~~~G-i~v~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T 524 (579)
.. ..+. ....+++.+.++| +++++|||++..+. ..+..+..++ ..+++++++|+++|
T Consensus 252 ~~-------~~~~-~~~~~~~~l~~aGGv~valgsD~~~~~~~~l~~~~~~a~-------------~~gl~~~~al~~~T 310 (359)
T cd01309 252 KV-------EEVN-DAIDTNAYLLKKGGVAFAISSDHPVLNIRNLNLEAAKAV-------------KYGLSYEEALKAIT 310 (359)
T ss_pred cH-------HHhh-cchhhHHHHHHcCCceEEEECCCCCccchhHHHHHHHHH-------------HcCCCHHHHHHHHH
Confidence 21 0111 4456788999998 99999999875432 2333333222 24589999999999
Q ss_pred HHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 525 LSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 525 ~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.|||++||+++++|+|++||.|||||||++|++. ..++..||++|++||
T Consensus 311 ~n~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~~-----~~~v~~v~i~G~~v~ 359 (359)
T cd01309 311 INPAKILGIEDRVGSLEPGKDADLVVWNGDPLEP-----TSKPEQVYIDGRLVY 359 (359)
T ss_pred HHHHHHhCCCCCcccCCCCCccCEEEECCCcccc-----cCcccEEEECCEEeC
Confidence 9999999999989999999999999999999874 348999999999987
No 74
>PRK08417 dihydroorotase; Provisional
Probab=99.95 E-value=5.9e-27 Score=243.23 Aligned_cols=211 Identities=13% Similarity=0.122 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHH---------------------HHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLV---------------------LDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
.+.+.+.++++.+++.|.++.+|+....-.+.. ..+..+...-....+.+.++.|...-
T Consensus 127 ~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 127 LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 567889999999999999999999643211100 00111111111123558888888663
Q ss_pred Ch-hhHHHHhhCC--cEEEecccccccchhHHH------HhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC----
Q 008063 422 AS-GTAARFGDQG--IVASMQPQHLLDDADSAR------KKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN---- 488 (579)
Q Consensus 422 ~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~------~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~---- 488 (579)
.. +.++..++.| +++.+||++...+.+.+. +..+|.|.++....+.+.+..|....++||....+..
T Consensus 207 ~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~ 286 (386)
T PRK08417 207 RSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL 286 (386)
T ss_pred HHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC
Confidence 32 3344445454 788999999887665442 3456677667777888889999999999997644210
Q ss_pred HHH-------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC------
Q 008063 489 PLC-------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS------ 555 (579)
Q Consensus 489 ~~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~------ 555 (579)
.+. .+..++.-.. ..+..+.+++++++++++|.|||+.||+++ |+|++|+.|||+++|.+.
T Consensus 287 ~~~~a~~G~~g~e~~~~~~~----~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~--G~l~~G~~ADlvi~d~~~~~~~~~ 360 (386)
T PRK08417 287 AFDEAAFGIDSICEYFSLCY----TYLVKEGIITWSELSRFTSYNPAQFLGLNS--GEIEVGKEADLVLFDPNESTIIDD 360 (386)
T ss_pred CHhHCCCCchHHHHHHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCCcCCEEEEcCCCCeEeCC
Confidence 111 1111111000 001134569999999999999999999964 999999999999999763
Q ss_pred -CCChhhc-cCCeEEEEEECCEEeCC
Q 008063 556 -WEDFAAE-VSASIEATYVSGVQAYP 579 (579)
Q Consensus 556 -~~~~~~~-~~~~v~~v~v~G~~v~~ 579 (579)
+.++... ...+|..||++|++||.
T Consensus 361 ~~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 361 NFSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred CCCCccCCEEeccEEEEEECCEEEeC
Confidence 2232221 24589999999999974
No 75
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.95 E-value=8.1e-26 Score=236.50 Aligned_cols=179 Identities=22% Similarity=0.210 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHCCC------eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccC---CChhhHHHHhhCC
Q 008063 363 MELESLLSMTMASDKSGL------QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH---LASGTAARFGDQG 433 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~------~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~---~~~~~~~~~~~~~ 433 (579)
.+.+.+.++.+.++..+. ++++|+.... ..++...+.....|....++...|+.. ..++.++.++ .|
T Consensus 168 ~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~---~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~-~G 243 (388)
T PRK10657 168 PTVEELARLAAEARVGGLLSGKAGIVHVHMGDGK---KGLQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAK-KG 243 (388)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCch---HHHHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHH-cC
Confidence 467788887777765444 7999987322 222222223334565555666777665 3334444444 56
Q ss_pred cEEEec-ccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC---eeeecCCCCCCC-----------------CCHHHH
Q 008063 434 IVASMQ-PQHLLDDADSARKKLGVDRAERESYLFQSLLANNA---LLALGSDWPVAD-----------------INPLCA 492 (579)
Q Consensus 434 i~~~~~-p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi---~v~~gsD~~~~~-----------------~~~~~~ 492 (579)
..+.+. +..... .+... .....+..+++.|+ +++++||..... ...+..
T Consensus 244 ~~~~v~~~~~~~~---------~~~~~-~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~ 313 (388)
T PRK10657 244 GVIDLTTSDPDFL---------GEGEV-APAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEE 313 (388)
T ss_pred CeEEEecCCCccc---------ccCcc-CHHHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHH
Confidence 555333 222110 00000 22346789999998 789999953211 114445
Q ss_pred HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEE
Q 008063 493 IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYV 572 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v 572 (579)
+..++. ..+++++++++++|.|||+.+|+++ +|+|++|+.|||+++|.+. ++..||+
T Consensus 314 ~~~~~~------------~~gis~~~~l~~aT~npA~~lg~~~-~G~l~~G~~AD~vv~~~~~----------~~~~~~~ 370 (388)
T PRK10657 314 VRELVK------------DEGLPLEDALKPLTSNVARFLKLNG-KGEILPGKDADLLVLDDDL----------RIEQVIA 370 (388)
T ss_pred HHHHHH------------hcCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEECCCC----------CEEEEEE
Confidence 554442 3469999999999999999999987 8999999999999999322 6999999
Q ss_pred CCEEeC
Q 008063 573 SGVQAY 578 (579)
Q Consensus 573 ~G~~v~ 578 (579)
+|++|+
T Consensus 371 ~G~~v~ 376 (388)
T PRK10657 371 KGKLMV 376 (388)
T ss_pred CCEEEE
Confidence 999886
No 76
>PRK09237 dihydroorotase; Provisional
Probab=99.95 E-value=3.3e-26 Score=238.36 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=113.1
Q ss_pred HHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHhhCCcEE
Q 008063 369 LSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQGIVA 436 (579)
Q Consensus 369 ~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~~~~i~~ 436 (579)
+.....+++.|.++.+|+.... ...++.+.+ .....+.||...++ +......+.|..+
T Consensus 171 ~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l----------~~g~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~ 240 (380)
T PRK09237 171 ELAKAIAAEANLPLMVHIGNPPPSLEEILELL----------RPGDILTHCFNGKPNRILDEDGELRPSVLEALERGVRL 240 (380)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhc----------cCCCEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEE
Confidence 3344445589999999995332 223322211 11236899987776 5667777788888
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
.+...+.. ........+.+.|+ +.+++||..... ..+...+...+.+. .+.+
T Consensus 241 ~ig~g~~~----------------~~~~~~~~l~~~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~---------~~~g 295 (380)
T PRK09237 241 DVGHGTAS----------------FSFKVAEAAIAAGILPDTISTDIYCRNRINGPVYSLATVMSKF---------LALG 295 (380)
T ss_pred EecCCCCc----------------ccHHHHHHHHHCCCCceEEECCCCCCCcccchHhHHHHHHHHH---------HHhC
Confidence 76533211 11123456778886 569999964432 12222233333221 1246
Q ss_pred CCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC----Chhh-----ccCCeEEEEEECCEEeCC
Q 008063 514 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE----DFAA-----EVSASIEATYVSGVQAYP 579 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~----~~~~-----~~~~~v~~v~v~G~~v~~ 579 (579)
++++++++++|.|||+++|++ .+|+|++|+.|||++++.+... ++.. .....|..||++||+||.
T Consensus 296 ~~~~~al~~aT~n~A~~lgl~-~~G~l~~G~~ADlvv~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~v~G~~~~~ 369 (380)
T PRK09237 296 MPLEEVIAAVTKNAADALRLP-ELGRLQVGSDADLTLFTLKDGPFTLTDSEGDSLIGERLLTPLATVRGGKVVLT 369 (380)
T ss_pred CCHHHHHHHHHHHHHHHcCCC-CCCcCCCCCcCCEEEEeCCCCCccccCCCCCEEEecCCCcceEEEECCEEEEc
Confidence 999999999999999999995 4899999999999999854322 2221 124699999999999974
No 77
>PRK09061 D-glutamate deacylase; Validated
Probab=99.95 E-value=3.7e-25 Score=236.67 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHH--HHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-------hhHHHHhhCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRA--NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-------GTAARFGDQG 433 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-------~~~~~~~~~~ 433 (579)
.+.+++.++++.++++|.++.+|+..... .......+++........+.+.++.|+..... +.++++++.|
T Consensus 196 ~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~G 275 (509)
T PRK09061 196 TGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQG 275 (509)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcC
Confidence 57889999999999999999999974321 01112222222222222345789999987432 3455566666
Q ss_pred --cEEEecccc--------cccchhHHHHh--------h---Chhh-h-------------------------hhhhhhH
Q 008063 434 --IVASMQPQH--------LLDDADSARKK--------L---GVDR-A-------------------------ERESYLF 466 (579)
Q Consensus 434 --i~~~~~p~~--------~~~~~~~~~~~--------l---~~~~-~-------------------------~~~~~~l 466 (579)
+++.++|.+ .....++.... + ++.. . ......+
T Consensus 276 i~Vt~e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (509)
T PRK09061 276 LDVTTEAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALL 355 (509)
T ss_pred CcEEEEecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhH
Confidence 466788888 22222222110 1 1100 0 0112234
Q ss_pred HHHHHCCCeeeecCCCCCCCCC----HHHHHHHHHcccC------CCCCCC---C-CCCCCCCHHHHHHHHcHHHHHhcc
Q 008063 467 QSLLANNALLALGSDWPVADIN----PLCAIRTAMKRIP------PGWDNA---W-IPSERISLTDALIAHTLSAARACF 532 (579)
Q Consensus 467 ~~l~~~Gi~v~~gsD~~~~~~~----~~~~~~~~~~~~~------~~~~~~---~-~~~~~ls~~~al~~~T~npA~~lg 532 (579)
....+.+.. +++||+....+. .+........... ..+... + .....+|++++++++|.+||++||
T Consensus 356 ~~~l~~p~~-~i~sD~~p~~~~~~~~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg 434 (509)
T PRK09061 356 DRSVLFPGA-AIASDAMPWTWSDGTVYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILE 434 (509)
T ss_pred HHHhCCCCc-eEecCCccccccccccccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhc
Confidence 555666655 999996321100 0000000000000 000000 0 122359999999999999999999
Q ss_pred -----cCCccccccCCCcccEEEeCCCCCCChhhcc-----CCeEEEEEECCEEeC
Q 008063 533 -----LENDVGSLSPGKIADFVILSTSSWEDFAAEV-----SASIEATYVSGVQAY 578 (579)
Q Consensus 533 -----l~~~~G~I~~G~~ADlvvld~~~~~~~~~~~-----~~~v~~v~v~G~~v~ 578 (579)
+++ .|+|++|+.|||||||.+.+.+.+.+. ...|..||++|++||
T Consensus 435 ~~~~~l~~-~G~i~~G~~ADlvv~D~~~~~~~~~~~~~~~~~~gi~~v~v~G~~v~ 489 (509)
T PRK09061 435 DSVPAMRR-KGRLQAGADADIVVFDPETITDRATFEDPNRPSEGVRHVLVNGVPVV 489 (509)
T ss_pred cccccccC-CEeeCCCCCcCEEEEchhhccccccccccCCCCCCceEEEECCEEEE
Confidence 865 699999999999999988654332221 235889999999986
No 78
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=231.07 Aligned_cols=322 Identities=23% Similarity=0.318 Sum_probs=209.2
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEE-ecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVS-VGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMA 120 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~-Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~ 120 (579)
...+++++||++++|.-......++|.|.+|||+. +++.. +++.++||+.|+||+|||||.|+|.-.+..
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~------~e~~~~iDa~g~yivPGfID~H~HIESSm~--- 91 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR------AEATEVIDAAGRYIVPGFIDAHLHIESSML--- 91 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC------cccceeecCCCCEeccceeecceecccccc---
Confidence 56788999999999985545578899999999999 54432 267899999999999999999999743211
Q ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcC
Q 008063 121 RVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVG 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g 200 (579)
+
T Consensus 92 ---------------------------------------------t---------------------------------- 92 (584)
T COG1001 92 ---------------------------------------------T---------------------------------- 92 (584)
T ss_pred ---------------------------------------------C----------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccch
Q 008063 201 ITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSW 280 (579)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~ 280 (579)
...+.+..+.+|+||+.. +...+.++
T Consensus 93 ------------------------------------------------P~~FA~~Vlp~GtTtvV~------DPHEIaNV 118 (584)
T COG1001 93 ------------------------------------------------PSEFARAVLPHGTTTVVS------DPHEIANV 118 (584)
T ss_pred ------------------------------------------------HHHHHHHhhccCceEEee------CcHHHHhh
Confidence 123667789999999876 33344455
Q ss_pred HHHHHHHHHHhhcCCCeeEEEEccCccchh-------------hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccc
Q 008063 281 EDFADVYQWASYSEKMKIRVCLFFPLETWS-------------SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALF 347 (579)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~ 347 (579)
.....+.-.+.+....+++++.+.++-... ...++..+ -... +..-.|
T Consensus 119 ~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~--------p~Vi-----------gl~E~M 179 (584)
T COG1001 119 LGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEH--------PEVI-----------GLGEMM 179 (584)
T ss_pred ccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhC--------CCcc-----------chhhhc
Confidence 555566666667777899999876542211 11111111 0000 001111
Q ss_pred cCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHH
Q 008063 348 HEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAA 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~ 427 (579)
.-| +.. --++.+-.-++.+++.|.++..|+.|-.. ..+..|..+ -....|-...-+|.++
T Consensus 180 n~p--------gVi-~~D~~~l~kl~a~~~~~k~VdGHapgl~g--~~Ln~Y~aa---------Gi~tDHE~~t~EEa~~ 239 (584)
T COG1001 180 NFP--------GVI-EGDPDMLAKLEAARKAGKPVDGHAPGLSG--KELNAYIAA---------GISTDHESTTAEEALE 239 (584)
T ss_pred CCc--------hhc-cCCHHHHHHHHHHHHcCCeecccCCCCCh--HHHHHHHhc---------CCCcCcccCCHHHHHH
Confidence 111 111 12344555578899999999999986652 223333322 2244555554445455
Q ss_pred HHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC-CCHHHHHHHHHcccCCCCC
Q 008063 428 RFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD-INPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 428 ~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~ 505 (579)
++ +.|..+.+--.+...+.. ..++.+.+.|. +++++||..... .-.-..+...+++.
T Consensus 240 kl-r~Gm~i~iReGS~a~dl~---------------~l~~~i~e~~~~~~~lcTDD~~p~dl~~eGhld~~vR~A----- 298 (584)
T COG1001 240 KL-RLGMKIMIREGSAAKDLA---------------ALLPAITELGSRRVMLCTDDRHPDDLLEEGHLDRLVRRA----- 298 (584)
T ss_pred HH-hCCcEEEEEcCchhhhHH---------------HHHHHHhhcCCceEEEECCCCChhHhhhcCCHHHHHHHH-----
Confidence 54 568888777665542111 12345566775 799999964332 11111122233322
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
-+.|++|.+|++|+|.|||+++|+++ +|.|+||+.||||+++ + +++.++..|+++|++|.
T Consensus 299 ----i~~Gv~p~~a~qmAtiN~A~~~gl~~-~G~iAPG~~ADlvi~~-----D---L~~~~v~~V~~~G~~v~ 358 (584)
T COG1001 299 ----IEEGVDPLDAYQMATINPAEHYGLDD-LGLIAPGRRADLVILE-----D---LRNFKVTSVLIKGRVVA 358 (584)
T ss_pred ----HHcCCCHHHHHHHHhcCHHHHcCCcc-cccccCCccccEEEEc-----c---cccCceeEEEECCEEEe
Confidence 34679999999999999999999998 9999999999999999 2 23558999999999985
No 79
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.94 E-value=1.1e-24 Score=233.30 Aligned_cols=312 Identities=24% Similarity=0.300 Sum_probs=191.8
Q ss_pred cEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCccccccccC
Q 008063 46 DLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLR 125 (579)
Q Consensus 46 ~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~ 125 (579)
+++|+|++|+++.+.....++|+|+||||++|++. .+.++||++|++|+|||||+|+|+..+..
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~--------~~~~viDa~G~~v~PG~ID~H~Hi~~~~~-------- 64 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY--------NGVKVIDALGEYAVPGFIDAHIHIESSML-------- 64 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCC--------CCCeEEECCCCEEEeCeEecccccCCCCC--------
Confidence 47899999999766555667999999999999863 23589999999999999999999843211
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCCC
Q 008063 126 GVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLS 205 (579)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~~ 205 (579)
T Consensus 65 -------------------------------------------------------------------------------- 64 (552)
T TIGR01178 65 -------------------------------------------------------------------------------- 64 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHH
Q 008063 206 EDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFAD 285 (579)
Q Consensus 206 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~ 285 (579)
+++ .+.+.++..|+|++.+.....++. ...+.+..
T Consensus 65 -----------------------------------~~~-------~~~~~al~~GvTtvv~~P~~~~~v---~g~~~~~~ 99 (552)
T TIGR01178 65 -----------------------------------TPS-------EFAKLVLPHGVTTVVSDPHEIANV---NGEDGINF 99 (552)
T ss_pred -----------------------------------Chh-------HHHHHHHCCCEEEEEcCCCCCCCC---CCHHHHHH
Confidence 000 023457999999999864322221 12223322
Q ss_pred HHHHHhhcCCCeeEEEEccCcc-------------chhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 286 VYQWASYSEKMKIRVCLFFPLE-------------TWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 286 ~~~~~~~~~~~~i~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
..+ .....+++++...+.- +.++..++..+ -...|+|.+.+- |
T Consensus 100 ~~~---~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~--------~~V~glke~m~~-----------~-- 155 (552)
T TIGR01178 100 MLN---NAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMEL--------DEVLGLAEVMDY-----------P-- 155 (552)
T ss_pred HHH---HhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcC--------CCccEEEEEecc-----------h--
Confidence 332 2234577776655531 11122222111 123345544311 0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC
Q 008063 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~ 432 (579)
+. ...++.+.+.++.+++.|..+..|+.+-. ...+..+.. . .....|+....++ ...-...
T Consensus 156 ------~v-~~~d~~~l~~i~~a~~~g~~I~gHap~l~--~~eL~~~~~----a-----Gi~~dHe~~s~~e-a~e~~~~ 216 (552)
T TIGR01178 156 ------GV-INADIEMLNKINSARKRNKVIDGHCPGLS--GKLLNKYIS----A-----GISNDHESTSIEE-AREKLRL 216 (552)
T ss_pred ------hh-cCCCHHHHHHHHHHHhCCCEEEecCCCCC--HHHHHHHHH----c-----CCCCCcCcCCHHH-HHHHHHC
Confidence 00 01233444445888999999999986332 222222221 1 2356676554444 4444456
Q ss_pred CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHH------HHHHHHHcccCCCCCC
Q 008063 433 GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPL------CAIRTAMKRIPPGWDN 506 (579)
Q Consensus 433 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~------~~~~~~~~~~~~~~~~ 506 (579)
|..+.+.-.+...+.+ ...++... +.+.+++++||. ..+.+++ ..++.++.
T Consensus 217 Gm~~~ir~gs~~~n~~-------------~~~~~~~~-~~~~~~~l~TD~-~~~~~~~~~g~l~~~v~~ai~-------- 273 (552)
T TIGR01178 217 GMKLMIREGSAAKNLE-------------ALHPLINE-KNCRSLMLCTDD-RHVNDILNEGHINHIVRRAIE-------- 273 (552)
T ss_pred CCEEEEeCCccccCHH-------------HHHHHHhh-cCCceEEEEeCC-CChhHHHhcCCHHHHHHHHHH--------
Confidence 7777765554432211 11111111 366899999994 2233333 34444432
Q ss_pred CCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 507 AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 507 ~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.++++++|++|+|.|||+++|+++ .|+|+||+.||||+++.. ...++..||++|++|.
T Consensus 274 -----~g~~~~~Al~maT~npA~~lgl~~-~G~I~pG~~ADlvvl~~l--------~~~~v~~v~~~G~~v~ 331 (552)
T TIGR01178 274 -----HGVDPFDALQMASINPAEHFGIDV-GGLIAPGDPADFVILKDL--------RNFKVNKTYVKGKLLD 331 (552)
T ss_pred -----cCCCHHHHHHHHHHHHHHHcCCCC-CcccCCCCcCCEEEECCC--------CCceEEEEEECCEEEc
Confidence 359999999999999999999986 799999999999999931 1347999999999875
No 80
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=99.94 E-value=1.3e-24 Score=227.96 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHH---------------------HHHHHHHHHHhcCCCCCCceEeeccCC
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDL---------------------VLDMYKSVVVTTGKRDQRFRIEHAQHL 421 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~H~~~~ 421 (579)
.+++.+.++++.++++|+++.+|+....-... ...+..+.....-..+.+.++.|....
T Consensus 144 ~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~ 223 (411)
T TIGR00857 144 QDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTK 223 (411)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCH
Confidence 46789999999999999999999863321110 001111111111112457888898763
Q ss_pred Ch-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-CH--
Q 008063 422 AS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADI-NP-- 489 (579)
Q Consensus 422 ~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-~~-- 489 (579)
.. +.+...++.| +++.+||++...+.+.+.. ..+|.|.++....+...+++|...+++||...... ..
T Consensus 224 ~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~ 303 (411)
T TIGR00857 224 ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK 303 (411)
T ss_pred HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccC
Confidence 32 3344445554 7889999998766655432 34555655667778899999999999999653321 00
Q ss_pred -HHHHHHHHcccCCCCCCC--CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C-Chhhcc-
Q 008063 490 -LCAIRTAMKRIPPGWDNA--WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E-DFAAEV- 563 (579)
Q Consensus 490 -~~~~~~~~~~~~~~~~~~--~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~-~~~~~~- 563 (579)
+.....++.......... +..+.+++++++++++|.|||+.+|++++ |+|++|+.|||+++|.+.. . +.+++.
T Consensus 304 ~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~-G~l~~G~~ADlvi~d~~~~~~~~~~~~~~ 382 (411)
T TIGR00857 304 EFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDK-GTLEEGNPADITVFDLKKEWTINAETFYS 382 (411)
T ss_pred CHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCC-CccCCCCcCCEEEEcCCCCEEEchHHCcc
Confidence 100000000000000000 01233699999999999999999999764 9999999999999997752 1 111111
Q ss_pred ------------CCeEEEEEECCEEeCC
Q 008063 564 ------------SASIEATYVSGVQAYP 579 (579)
Q Consensus 564 ------------~~~v~~v~v~G~~v~~ 579 (579)
..+|..|+++|++||.
T Consensus 383 ~~~~sp~~g~~~~g~v~~tiv~G~~v~~ 410 (411)
T TIGR00857 383 KAKNTPFEGMSLKGKPIATILRGKVVYE 410 (411)
T ss_pred CCCCCCcCCCEEEeEEEEEEECCEEEec
Confidence 2379999999999973
No 81
>PRK01211 dihydroorotase; Provisional
Probab=99.93 E-value=1.9e-24 Score=224.16 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=103.4
Q ss_pred CceEeeccCCChhhHHHHhhCCcEEEecccccccchhH----HHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC
Q 008063 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADS----ARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI 487 (579)
Q Consensus 412 ~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~----~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~ 487 (579)
+.++.|...-. .+ ..+++.+||++...+.+. ..+..+|.|..+....+.+.+..|....++||.+....
T Consensus 209 ~~hi~HvSt~~--~~-----~~vt~Ev~phhL~l~~~~~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~ 281 (409)
T PRK01211 209 TKIIAHVSSID--VI-----GRFLREVTPHHLLLNDDMPLGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTE 281 (409)
T ss_pred CcEEEEecChh--hc-----CceEEEecHHHHccccccccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCCh
Confidence 56777776522 12 378999999998765432 22345666766777788899999999999999764321
Q ss_pred CHHHHHHHHHccc---CCCCCCC--CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCC-C----
Q 008063 488 NPLCAIRTAMKRI---PPGWDNA--WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSW-E---- 557 (579)
Q Consensus 488 ~~~~~~~~~~~~~---~~~~~~~--~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~-~---- 557 (579)
.....++.+..+. ....... +..+.++|++++++++|.|||+.+|++ +|+|++|+.|||||+|.+.. .
T Consensus 282 ~eK~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~--kG~l~~G~~ADlvi~D~~~~~~v~~~ 359 (409)
T PRK01211 282 EDKQEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIK--KGKIEEGYDADFMAFDFTNIKKINDK 359 (409)
T ss_pred hHhCCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEEcCCCeEEEChH
Confidence 1100000000000 0000000 113556999999999999999999994 59999999999999997632 1
Q ss_pred ---------ChhhccCCeEEEEEECCEEeC
Q 008063 558 ---------DFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 558 ---------~~~~~~~~~v~~v~v~G~~v~ 578 (579)
++....-.++..|+++|++||
T Consensus 360 ~~~s~~~~spf~G~~~~~v~~tiv~G~~v~ 389 (409)
T PRK01211 360 RLHSKCPVSPFNGFDAIFPSHVIMRGEVVI 389 (409)
T ss_pred HhhccCCCCCCCCCEeccEEEEEECCEEEE
Confidence 111111117999999999986
No 82
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.93 E-value=2e-23 Score=223.33 Aligned_cols=164 Identities=21% Similarity=0.197 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
-+++.+.++. .+ .+..+..|+.+-.. ..+.+|..+ | ....|.....++.++++ +.|..+.+.-.+
T Consensus 195 ~d~~~~~ki~-~~--~~~~idGH~p~l~g--~~L~ay~aa----G-----i~sDHE~~t~eea~ekl-r~Gm~v~iRegS 259 (588)
T PRK10027 195 GQNALLDKLD-AF--RHLTLDGHCPGLGG--KELNAYIAA----G-----IENCHESYQLEEGRRKL-QLGMSLMIREGS 259 (588)
T ss_pred CCHHHHHHHH-Hh--CCCceECCCCCCCh--HHHHHHHHc----C-----CCCCcccCCHHHHHHHH-HCCCEEEEeCCc
Confidence 3566666666 33 88899999975542 333444322 2 24456555445555555 458888888776
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHH-HCC-CeeeecCCCCCCC-----CCHHHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLL-ANN-ALLALGSDWPVAD-----INPLCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~-~~G-i~v~~gsD~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
...+.+ .+..+. +.+ -+++++||..... -.....++.++. ..|++
T Consensus 260 ~~~nl~----------------~l~~~~~~~~~~~~~l~TDd~~~~~l~~~Ghi~~~vr~av~------------~~Gi~ 311 (588)
T PRK10027 260 AARNLN----------------ALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIE------------QHNVP 311 (588)
T ss_pred cccCHH----------------HHHHHhhccCCCeEEEEcCCCChHHHHhccCHHHHHHHHHH------------HcCCC
Confidence 553322 222222 222 3689999974321 112234444442 35799
Q ss_pred HHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 516 LTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+++|++|+|.|||+++|+++ +|+|+||+.|||+++|... ..++..||++|++|+
T Consensus 312 ~~~Ai~mAT~nPA~~lgl~d-~G~IapG~~ADlvvld~l~--------~~~v~~v~~~G~~v~ 365 (588)
T PRK10027 312 LHVAYRVASWSTARHFGLNH-LGLLAPGKQADIVLLSDAR--------KVTVQQVLVKGEPID 365 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCC-CcccCCCCcCCEEEEccCC--------CceEEEEEECCEEee
Confidence 99999999999999999986 7999999999999999531 237999999999886
No 83
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.92 E-value=6.2e-23 Score=213.31 Aligned_cols=110 Identities=17% Similarity=0.049 Sum_probs=77.6
Q ss_pred HHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCC------------CCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 468 SLLANNALLALGSDWPVAD--INPLCAIRTAMKRIPPG------------WDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 468 ~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.+.+.--++.++||.|... .....-++..|.+..+. ....-.-+..+|++++++++|.|||+.||+
T Consensus 367 ll~~dp~~~~~tTDhPn~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nPAKiLGL 446 (541)
T cd01304 367 LLIDDPWKVILTTDHPNGGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLGL 446 (541)
T ss_pred HHhCCcceEEeecCCCCCCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3444555899999998776 34444555555332110 001112345689999999999999999999
Q ss_pred CCccccccCCCcccEEEeCCCCCC-Chhhcc-----CCeEEEEEECCEEeC
Q 008063 534 ENDVGSLSPGKIADFVILSTSSWE-DFAAEV-----SASIEATYVSGVQAY 578 (579)
Q Consensus 534 ~~~~G~I~~G~~ADlvvld~~~~~-~~~~~~-----~~~v~~v~v~G~~v~ 578 (579)
++ +|+|++|+.|||+|+|.++.. +.+++. ..+|..||++|++|+
T Consensus 447 ~~-kG~L~~G~~ADLvIfD~n~~~v~~~dl~s~~~~~gkV~~Tiv~GkvVv 496 (541)
T cd01304 447 SD-KGHLGVGADADIAIYDDDPDQVDPSDYEKVEKAFSRAAYVLKDGEIVV 496 (541)
T ss_pred CC-CCccCCCCcCCEEEEeCCcCccCchhhcCceeecCcEEEEEECCEEEE
Confidence 74 699999999999999988653 222221 348999999999986
No 84
>PRK04250 dihydroorotase; Provisional
Probab=99.92 E-value=1.6e-23 Score=217.50 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=100.9
Q ss_pred CCCceEeeccCCChhhHHHHhhCC---cEEEecccccccchhHHH-----HhhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 410 DQRFRIEHAQHLASGTAARFGDQG---IVASMQPQHLLDDADSAR-----KKLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 410 ~~~~~i~H~~~~~~~~~~~~~~~~---i~~~~~p~~~~~~~~~~~-----~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
+.+.++.|... .+.++.+++.| +++.+||++...+.+.+. +..+|.|..+....+...+.. ...++||
T Consensus 197 ~~~lhi~HvSt--~~~~~~i~~~g~~~vt~Ev~ph~L~l~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~sD 272 (398)
T PRK04250 197 KKPLHICHIST--KDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPLLKVYPPLRSEEDRKALWENFSK--IPIIASD 272 (398)
T ss_pred CCCEEEEeCCC--HHHHHHHHHcCCCcEEEEeCHHHhccCHHHHCCCCceEEcCCCCCHHHHHHHHHhhcc--CCEEEcC
Confidence 45788888765 44445555443 788999999987666541 233445544444445555543 7889999
Q ss_pred CCCCC-------CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 482 WPVAD-------INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 482 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
.+... +..+..+...+.-.. .+..+.+++++++++++|.|||+.||+++ .| |++|+.|||+|+|.+
T Consensus 273 HaP~~~~~k~~~~~G~~g~e~~lpl~~-----~~v~~~~lsl~~~v~~~t~npAk~lgl~~-~G-L~~G~~ADlvi~D~~ 345 (398)
T PRK04250 273 HAPHTLEDKEAGAAGIPGLETEVPLLL-----DAANKGMISLFDIVEKMHDNPARIFGIKN-YG-IEEGNYANFAVFDMK 345 (398)
T ss_pred CcccCHHHhhcCCCCcchHHHHHHHHH-----HHHHhcCCCHHHHHHHHHHHHHHHhCCCC-cC-ccCCCcCCEEEEcCC
Confidence 75432 111111111111000 01134469999999999999999999965 69 999999999999976
Q ss_pred C-C-------------CChhhc-cCCeEEEEEECCEEeC
Q 008063 555 S-W-------------EDFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 555 ~-~-------------~~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
. + .++... ...+|..||++|++||
T Consensus 346 ~~~~v~~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~ 384 (398)
T PRK04250 346 KEWTIKAEELYTKAGWTPYEGFKLKGKVIMTILRGEVVM 384 (398)
T ss_pred CcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEE
Confidence 3 1 111111 1458999999999987
No 85
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=218.03 Aligned_cols=413 Identities=18% Similarity=0.217 Sum_probs=240.7
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
..++|||++|++-+.. ...||+++||.|.+|+++..+ +.+.++||++|++|+||.||.|+|+- ..+
T Consensus 14 ~rllikgg~vvN~d~~--~~aDV~vedGiI~~vg~~l~i----pgg~~~ida~g~~ViPGgID~Hthlq--------~p~ 79 (522)
T KOG2584|consen 14 NRLLIKGGRVVNDDQS--FKADVYVEDGIIKEVGENLII----PGGVKVIDATGKMVIPGGIDPHTHLQ--------MPF 79 (522)
T ss_pred cceeeeCCEEEccCCc--eeeeEEeccCEEEEecccEEc----CCCceEEecCCcEEecCccCccceec--------ccc
Confidence 4599999999987654 567999999999999998554 47899999999999999999999973 356
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEE-EEeCCCchhhhcHHHHHHcCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVW-LSRMDGHMGLANSVALQLVGITN 203 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~-~~~~~~~~~~~n~~~~~~~g~~~ 203 (579)
.|.++.+++.++.+++.+. .. --.+|...|+.+.- +..+.-...++..+.-+..|++.
T Consensus 80 ~G~ts~DdF~~GTkAAlaG----Gt-----------------TmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv 138 (522)
T KOG2584|consen 80 MGMTSVDDFFQGTKAALAG----GT-----------------TMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHV 138 (522)
T ss_pred CCccchhhhhcccHHHhcC----Cc-----------------eEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeE
Confidence 7889999999999999761 00 01123333332211 11111122222222222222221
Q ss_pred CCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHH
Q 008063 204 LSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDF 283 (579)
Q Consensus 204 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~ 283 (579)
+.. .+. ..+.+.+..-. ...|+-+|.-+..| -.-+.-.-+++
T Consensus 139 ~It-----------------------------~W~----~~v~eem~~l~---~ekGvnsF~~fmay--k~~~~v~d~~l 180 (522)
T KOG2584|consen 139 GIT-----------------------------WWS----PSVKEEMEILV---KEKGVNSFKFFMAY--KDLYMVRDSEL 180 (522)
T ss_pred eee-----------------------------ecC----cchHHHHHHHh---hhcCcceEEeeeee--ccccccCHHHH
Confidence 110 111 11122221111 45688777665432 22223334455
Q ss_pred HHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCC
Q 008063 284 ADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVM 363 (579)
Q Consensus 284 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (579)
.+.+..+++.+.+ .+++. ++-+-..+..+ +++..|..+..+..+..|.. +
T Consensus 181 ye~l~~~~~lgal-a~vHA----Engd~iae~q~---------------~~l~~gitgPEgh~lSRPee----------~ 230 (522)
T KOG2584|consen 181 YEALKVCAELGAL-AMVHA----ENGDAIAEGQQ---------------RLLELGITGPEGHELSRPEE----------L 230 (522)
T ss_pred HHHHHHHhhcchh-heehh----hcchhhhhhhh---------------HHHHcCCcCcccccccCchh----------h
Confidence 5666665554443 22221 11111111110 11112222222333333333 5
Q ss_pred CHHHHHHHHHHHHHCCCeE-EEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 364 ELESLLSMTMASDKSGLQV-AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i-~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
+.|...+.+..|++.+.|+ .+|.....+.+.+..+-++.....+............+...+++... ...+++|..
T Consensus 231 EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~A----a~~v~sPPl 306 (522)
T KOG2584|consen 231 EAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHA----AAFVTSPPL 306 (522)
T ss_pred hHHHHHHHHHHHHhcCCCcceEEEeehhHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhc----ceeeeCCCC
Confidence 6788899999999999997 67877665555544443332222221111111111122222333222 334555554
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-------CCHHHHHHHHHcccCCCCCCCCC---CCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-------INPLCAIRTAMKRIPPGWDNAWI---PSE 512 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~ 512 (579)
... + .+...+..++..|..=..|||.+... -+-|..+..+++....+.+..|. ...
T Consensus 307 r~d---------~-----~t~~~L~~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G 372 (522)
T KOG2584|consen 307 RPD---------P-----TTPDGLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSG 372 (522)
T ss_pred CCC---------C-----CCHHHHHHHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhcccC
Confidence 321 0 12334678899999989999976442 34455556666666555555554 355
Q ss_pred CCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCCh--------------hhcc-CCeEEEEEECCEEe
Q 008063 513 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDF--------------AAEV-SASIEATYVSGVQA 577 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~--------------~~~~-~~~v~~v~v~G~~v 577 (579)
.+++.+.+...++|.|+++++..++|+|++|++||+||||.+....+ +... ...++-|+..||+|
T Consensus 373 ~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv 452 (522)
T KOG2584|consen 373 KMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVV 452 (522)
T ss_pred ccCcccEEEEecccchhheeccCcCceecccCCCcEEEECCCcceEeccccccccccceeecCcEecceeEEEEeCCeEE
Confidence 68899999999999999999999999999999999999998863311 1111 56889999999999
Q ss_pred C
Q 008063 578 Y 578 (579)
Q Consensus 578 ~ 578 (579)
|
T Consensus 453 ~ 453 (522)
T KOG2584|consen 453 Y 453 (522)
T ss_pred E
Confidence 7
No 86
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.92 E-value=1.3e-22 Score=212.00 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCC------------CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 469 LLANNALLALGSDWPVAD--INPLCAIRTAMKRIPP------------GWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 469 l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+.+.--++.+.||.|... ....+-++..|.+..+ .....-.-+..++++|+++|+|.+||++||++
T Consensus 371 l~~dp~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 371 LIKDPWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLYEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred hcCCcceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 344556899999998765 2333333333322111 00111124567999999999999999999998
Q ss_pred CccccccCCCcccEEEeCCCCCC---Chhhc--cCCeEEEEEECCEEeC
Q 008063 535 NDVGSLSPGKIADFVILSTSSWE---DFAAE--VSASIEATYVSGVQAY 578 (579)
Q Consensus 535 ~~~G~I~~G~~ADlvvld~~~~~---~~~~~--~~~~v~~v~v~G~~v~ 578 (579)
+ +|+|++|+.|||+|+|.++.. +...+ ....+..||++|++|+
T Consensus 451 d-kG~L~pGa~ADIaI~D~~~~~~~~~~~~v~~~~~~v~~Tik~G~vV~ 498 (556)
T TIGR03121 451 D-RGHLGVGADADIAVYDINPDDVDTDYADVEKAFSTALYVFKDGEIVV 498 (556)
T ss_pred C-CCCcCCCCcCCEEEEeCcccccCCchHHHhhccCCccEEEECCEEEE
Confidence 6 699999999999999876432 11111 1347899999999986
No 87
>PRK00369 pyrC dihydroorotase; Provisional
Probab=99.92 E-value=3.9e-23 Score=213.21 Aligned_cols=272 Identities=19% Similarity=0.156 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCce
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWV 327 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
.+..+.+.+++.|+|++.++... .|.....+..+......+. ...+++.++..... +..+.. . +
T Consensus 66 d~~sgs~AAa~GGvTtv~~mPnt----~P~~~~~~~l~~~~~~a~~-~~~vd~~~~~~~~~--~~~el~-~--------~ 129 (392)
T PRK00369 66 DVASGTSEAAYGGVTLVADMPNT----IPPLNTPEAITEKLAELEY-YSRVDYFVYSGVTK--DPEKVD-K--------L 129 (392)
T ss_pred cHHHHHHHHHhCCcEEEEECCCC----CCCCChHHHHHHHHHHhCc-CCeEEEEEEeeccC--CHHHHH-H--------h
Confidence 45667888999999999998643 2222333333333222222 22455554433222 111111 1 1
Q ss_pred EEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHH----------HHH
Q 008063 328 YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDL----------VLD 397 (579)
Q Consensus 328 ~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~----------~~~ 397 (579)
...|+|.+.++. ...+ +++.+.+.+.++.+||....-++. ...
T Consensus 130 ~~~g~k~f~~~~-----------------------~~~~----~~~~~~~~~~~v~~HaE~~~l~~~~~~~~rp~~aE~~ 182 (392)
T PRK00369 130 PIAGYKIFPEDL-----------------------EREE----TFRVLLKSRKLKILHPEVPLALKSNRKLRRNCWYEIA 182 (392)
T ss_pred hCceEEEECCCC-----------------------chHH----HHHHHHHhCCEEEEeCCCHHHhhcchhcccCHHHHHH
Confidence 233566552110 1122 344445556889999964321110 000
Q ss_pred HHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhH--HHHhhChhhhhhhhhhHHHHHHCCCe
Q 008063 398 MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADS--ARKKLGVDRAERESYLFQSLLANNAL 475 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~--~~~~l~~~~~~~~~~~l~~l~~~Gi~ 475 (579)
+...+.. . .+.++.|.... +.++..++.|+++.+||++...+.+. ..+..+|.|.++....+.+.+++ .
T Consensus 183 ai~~~~~-~----~~lhi~HvSt~--~~v~~ak~~gvt~Ev~pHhL~l~~~~~~~~k~~PPLR~~~dr~aL~~~l~~--i 253 (392)
T PRK00369 183 ALYYVKD-Y----QNVHITHASNP--RTVRLAKELGFTVDITPHHLLVNGEKDCLTKVNPPIRDINERLWLLQALSE--V 253 (392)
T ss_pred HHHHHHH-h----CCEEEEECCCH--HHHHHHHHCCCeEEechhHheeccCCCCceEEeCCCCCHHHHHHHHHHHHh--C
Confidence 1111111 1 47788887653 45677778899999999998754432 23456677765666667777766 6
Q ss_pred eeecCCCCCCCCC----HHHH-------HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 476 LALGSDWPVADIN----PLCA-------IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 476 v~~gsD~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
..++||.+..... .+.. +...+.-. ..+..+.+++++++++++|.|||+++|+++ |.|++|+
T Consensus 254 d~i~SDHaP~~~~~K~~~f~~~~~Gi~GlE~~lpll-----~~~v~~~~lsl~~~v~~~s~nPA~ilgl~~--g~i~~G~ 326 (392)
T PRK00369 254 DAIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFI-----YTLVSKGILSIDRAVELISTNPARILGIPY--GEIKEGY 326 (392)
T ss_pred CEEEeCCCCCCHHHccCCHhhCCCCCeeHHHHHHHH-----HHHHHcCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCC
Confidence 7999997544211 1110 00100000 001134569999999999999999999963 8899999
Q ss_pred cccEEEeCCCCCC-----------Chhhc-cCCeEEEEEECCEEeC
Q 008063 545 IADFVILSTSSWE-----------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 545 ~ADlvvld~~~~~-----------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
.|||+++|.+.+. ++... ...+|..||++|++||
T Consensus 327 ~ADlvi~d~~~~~~~~~~sk~~~sp~~G~~l~G~v~~ti~~G~~v~ 372 (392)
T PRK00369 327 RANFTVIQFEDWRYSTKYSKVIETPLDGFELKASVYATIVQGKLAY 372 (392)
T ss_pred ccCEEEEeCCceeEccccccCCCCCCCCCEeeeEEEEEEECCEEEE
Confidence 9999999987543 12111 1569999999999987
No 88
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.9e-24 Score=211.22 Aligned_cols=71 Identities=31% Similarity=0.503 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
..+.+++++++.. .+++++||++|+|.+||+.||+++++|+|++||.||||+||.|. +
T Consensus 310 Ltm~~avrn~v~~------------~~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d~----------~ 367 (380)
T COG1820 310 LTMDEAVRNLVEW------------GGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDL----------N 367 (380)
T ss_pred eeHHHHHHHHHHH------------hCCCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEECCCC----------c
Confidence 5777888877753 45899999999999999999999999999999999999999665 8
Q ss_pred EEEEEECCEEeCC
Q 008063 567 IEATYVSGVQAYP 579 (579)
Q Consensus 567 v~~v~v~G~~v~~ 579 (579)
|..||++|+++|.
T Consensus 368 v~~T~i~G~~~~~ 380 (380)
T COG1820 368 VKATWINGEKVFN 380 (380)
T ss_pred EEEEEECCEEeeC
Confidence 9999999999874
No 89
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.91 E-value=2e-23 Score=194.81 Aligned_cols=307 Identities=22% Similarity=0.276 Sum_probs=198.4
Q ss_pred ccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccccCcccccccc
Q 008063 45 ADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKL 124 (579)
Q Consensus 45 ~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~ 124 (579)
.+++++|++++++........+|.|-||||++++. .+. +.+.++||++|.+|.|||||.|+|.+.++.-
T Consensus 4 fdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~d-~~a----pa~tq~Ida~Gc~VspG~iDlHvHvy~ggt~------ 72 (386)
T COG3964 4 FDILLTGGRLIDPARGIDEITNIAIINGKIAAADD-YPA----PAETQIIDADGCIVSPGLIDLHVHVYYGGTE------ 72 (386)
T ss_pred cceeeeCCeecccccccCccceeeeecCeEEeccC-cCC----ChhheEEccCccEeccCeeeeeeEEecCCCc------
Confidence 46999999999986554467799999999999993 222 3568999999999999999999998765430
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHHHHHcCCCCC
Q 008063 125 RGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 204 (579)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~~~~~g~~~~ 204 (579)
T Consensus 73 -------------------------------------------------------------------------------- 72 (386)
T COG3964 73 -------------------------------------------------------------------------------- 72 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHH
Q 008063 205 SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFA 284 (579)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~ 284 (579)
++. ..-+...+.|+||+.|.|+- ...++.
T Consensus 73 -----~~v--------------------------------------~pd~~ga~~GvTTvVDAGSa--------Gaanf~ 101 (386)
T COG3964 73 -----GGV--------------------------------------RPDMYGAPNGVTTVVDAGSA--------GAANFD 101 (386)
T ss_pred -----cCc--------------------------------------CHHHccccCCceEEEecCCc--------Cccchh
Confidence 000 01223678899999999763 223455
Q ss_pred HHHHHHhhcCCCeeEEEEccCccch--------------hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCC
Q 008063 285 DVYQWASYSEKMKIRVCLFFPLETW--------------SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEP 350 (579)
Q Consensus 285 ~~~~~~~~~~~~~i~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~ 350 (579)
..++...+.....++.++....... .+..+..+ +..+ ...|+|+-......+
T Consensus 102 gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~r----eh~d--~ivGlKvR~s~~~~g-------- 167 (386)
T COG3964 102 GFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFR----EHRD--VIVGLKVRVSTEDIG-------- 167 (386)
T ss_pred hHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHH----hCcC--cEEEEEEEeeecccc--------
Confidence 6666666666555555543322211 11111111 1122 245677654332211
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH-HHHHHHHHHHHHHhcCCCCCCceEeeccCCC-------
Q 008063 351 YADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA-NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA------- 422 (579)
Q Consensus 351 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~------- 422 (579)
-..+ ..+.+..+.|+..++|+++|.-.... .+++++.+ ..-..+.||+..-
T Consensus 168 ---------~~Gi--tPl~la~~ia~~~klPlmvHigePp~~~dEvlerL----------~~GDIitHcfngkpn~~l~~ 226 (386)
T COG3964 168 ---------EYGI--TPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERL----------RRGDIITHCFNGKPNTILTD 226 (386)
T ss_pred ---------ccCC--chHHHHHHHHhhcCCceEEecCCCCccHHHHHHhc----------cCCceeeeeccCCCCCcccc
Confidence 0012 23667778888999999999865432 24443322 2355899997532
Q ss_pred h----hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC--CCHHHHHHH
Q 008063 423 S----GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD--INPLCAIRT 495 (579)
Q Consensus 423 ~----~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~--~~~~~~~~~ 495 (579)
+ ...++.++.|+.+..-....-.+. .-.+++...|+ +..++||-.... .-|.+.+-+
T Consensus 227 dg~vr~~vrra~erGV~fD~ghG~asfsf----------------~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla~ 290 (386)
T COG3964 227 DGVVRAEVRRARERGVIFDAGHGRASFSF----------------NVARRAIANGLLPDIISSDLHTITKLNGPVYDLAW 290 (386)
T ss_pred chhHHHHHHHHHhcceEEEccCCcceeeH----------------HHHHHHHhcCCCcceeeccceeeeecCchHHHHHH
Confidence 1 456677888988876544322111 12467888888 899999943222 123333333
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
.|..+ -..|+++.++++++|.|||..++++. +|+|+||..|||+||+..
T Consensus 291 ~mSKl---------lalgmpl~~Vi~avT~npA~~i~l~~-~gtLa~G~~aD~tvf~lk 339 (386)
T COG3964 291 IMSKL---------LALGMPLTDVINAVTHNPAVLIGLAE-IGTLAPGAFADITVFKLK 339 (386)
T ss_pred HHHHH---------HHcCCcHHHHHHHHhcCHHHHhCccc-cCccCCCcccceEEEEec
Confidence 33322 23469999999999999999999994 999999999999999744
No 90
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.91 E-value=5.8e-22 Score=207.28 Aligned_cols=64 Identities=28% Similarity=0.573 Sum_probs=52.4
Q ss_pred EEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeecccccccccccc
Q 008063 47 LVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 47 ~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
++|+|++|++++.. ..++|+|+||+|++|++..+... ..+.++||++|++|+|||||+|+|+..
T Consensus 2 ~~i~~~~v~~~~~~--~~~~v~i~~g~I~~v~~~~~~~~--~~~~~~id~~g~~v~PG~id~H~H~~~ 65 (387)
T cd01308 2 TLIKNAEVYAPEYL--GKKDILIAGGKILAIEDQLNLPG--YENVTVVDLHGKILVPGFIDQHVHIIG 65 (387)
T ss_pred EEEECcEEeCCCCc--cceEEEEECCEEEEEeCCccccc--CCCCeEEECCCCEEccCeeehhhCccc
Confidence 57999999997542 56799999999999997653221 245789999999999999999999853
No 91
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.90 E-value=6.3e-23 Score=212.40 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=103.5
Q ss_pred HHHHHHHHHCCCeEE-EEecch-HHHHHHHHHHHHHHHh--cCCC---------------C--CCc-eEeeccCCChhhH
Q 008063 369 LSMTMASDKSGLQVA-IHAIGD-RANDLVLDMYKSVVVT--TGKR---------------D--QRF-RIEHAQHLASGTA 426 (579)
Q Consensus 369 ~~~~~~a~~~g~~i~-iH~~g~-~~~~~~~~~~~~~~~~--~~~~---------------~--~~~-~i~H~~~~~~~~~ 426 (579)
.++++.++++|+.+. .|...+ ......++........ +++. . ... .|.|+.+++++++
T Consensus 175 ~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~~~~~ 254 (374)
T cd00854 175 LELIRYLVERGIIVSIGHSDATYEQAVAAFEAGATHVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVHPAAV 254 (374)
T ss_pred HHHHHHHHHCCeEEEeeCCcCCHHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCCHHHH
Confidence 788999999999994 887632 2333333321111110 0000 0 011 4667777788888
Q ss_pred HHHhhCC--cEEEecccccccchhHHHHhhChhhhhhhhhhHHHH--HHCCCeeeecCCCCC-CCCCHHHHHHHHHcccC
Q 008063 427 ARFGDQG--IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSL--LANNALLALGSDWPV-ADINPLCAIRTAMKRIP 501 (579)
Q Consensus 427 ~~~~~~~--i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l--~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~ 501 (579)
+.+.+.. -.+..++.++...+- + ...+++... ...+..+.+.+|..+ +..++...++.++..
T Consensus 255 ~~~~r~~g~~~~~lvtD~~~~~G~------~-----~g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~-- 321 (374)
T cd00854 255 RLAYRAKGADKIVLVTDAMAAAGL------P-----DGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKW-- 321 (374)
T ss_pred HHHHHhcCCCcEEEEeccccccCC------C-----CCeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHh--
Confidence 8777763 345555555432110 0 001111110 001112233333222 235566677666542
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECC
Q 008063 502 PGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574 (579)
Q Consensus 502 ~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G 574 (579)
.+++++++++++|.|||+.+|+++..|+|++|+.|||+++|.+. .|..||++|
T Consensus 322 ----------~~l~~~~al~~aT~npA~~lg~~~~~G~i~~G~~ADlvv~d~~~----------~v~~~~~~G 374 (374)
T cd00854 322 ----------GGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDDL----------NVKATWING 374 (374)
T ss_pred ----------hCCCHHHHHHHHhHHHHHHcCCCCCcCCcCCCCcCCEEEECCCC----------cEEEEEeCc
Confidence 34899999999999999999999778999999999999999764 799999987
No 92
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.90 E-value=2e-21 Score=200.02 Aligned_cols=58 Identities=31% Similarity=0.419 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 511 SERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 511 ~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
..++++++|++++|.|||+.+|+++.+|+|++|+.|||+|||.+. ++..||++|++++
T Consensus 323 ~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvvld~~~----------~v~~v~~~G~~~~ 380 (382)
T PRK11170 323 HVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTRDF----------KITKTIVNGNEVV 380 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEECCCC----------cEEEEEECCEEee
Confidence 357999999999999999999998778999999999999999654 7999999999886
No 93
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.89 E-value=3.9e-22 Score=204.66 Aligned_cols=67 Identities=30% Similarity=0.395 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCe
Q 008063 487 INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS 566 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 566 (579)
..+..+++.++. ..+++++++++++|.|||+.+|+++++|+|++|+.|||+|+|.+. +
T Consensus 314 ltl~~~v~~l~~------------~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~~~----------~ 371 (380)
T TIGR00221 314 LTMIEGARNLVE------------FTNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPDF----------E 371 (380)
T ss_pred hhHHHHHHHHHH------------hhCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCcCCEEEECCCC----------C
Confidence 556666666553 235999999999999999999998778999999999999999664 7
Q ss_pred EEEEEECCE
Q 008063 567 IEATYVSGV 575 (579)
Q Consensus 567 v~~v~v~G~ 575 (579)
+..||++|+
T Consensus 372 v~~t~~~G~ 380 (380)
T TIGR00221 372 VILTIVNGN 380 (380)
T ss_pred EEEEEeCCC
Confidence 999999995
No 94
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.5e-22 Score=187.49 Aligned_cols=96 Identities=25% Similarity=0.241 Sum_probs=72.7
Q ss_pred hhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 462 ESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 462 ~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
.....+++.+.|+...++||. .+.+.+.+....-. ....+++.+|++|+|+|||+++|+.+ +|+|+
T Consensus 282 GNvsA~ela~~glLDiLsSDY--~P~SLl~A~F~La~-----------~~~~~~lpqAvalvt~nPA~algl~D-RG~Ia 347 (377)
T COG3454 282 GNVSARELAQHGLLDILSSDY--VPASLLHAAFRLAD-----------LGSNISLPQAVALVTKNPARALGLTD-RGRIA 347 (377)
T ss_pred cchhHHHHHhCCceeeecccC--CcHHHHHHHHHHhh-----------hhcccCHHHHHHHhccCHHHhcCCCc-ccccc
Confidence 344568999999999999996 33344443322111 11235899999999999999999996 89999
Q ss_pred CCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 542 PGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 542 ~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
||++||||....+- .-..|..||+.||.|+
T Consensus 348 ~GlrADlv~v~~~~-------~vp~ir~vwr~G~rv~ 377 (377)
T COG3454 348 PGLRADLVRVRRDG-------GVPVIRTVWRAGKRVA 377 (377)
T ss_pred cccccceEEEecCC-------CCceeeeeeecceecC
Confidence 99999999775432 1248999999999885
No 95
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.89 E-value=1e-20 Score=196.03 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHhhC
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQ 432 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~~~ 432 (579)
+..+.+.+..+ +.+.++.+|+.... ...++++.+ ..| ..+.||+.... +.+......
T Consensus 165 ~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~-----~~g-----~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~ 233 (365)
T TIGR03583 165 PLEIAKQIQQE-NLELPLMVHIGSAPPELDEILALM-----EKG-----DVLTHCFNGKPNGILRETGEVKPSVLEAYNR 233 (365)
T ss_pred HHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHh-----cCC-----CeeeeeecCCCCCCCCCcchHHHHHHHHHhC
Confidence 44455545444 68999999997432 233333322 111 26789886665 566666677
Q ss_pred CcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCC-----C-CCHHHHHHHHHcccCCCCC
Q 008063 433 GIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVA-----D-INPLCAIRTAMKRIPPGWD 505 (579)
Q Consensus 433 ~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~-----~-~~~~~~~~~~~~~~~~~~~ 505 (579)
|+.+...-.......+ ....+...++ .++.++|.... + ......++.++
T Consensus 234 G~i~d~~hg~~~~~~~----------------~~~~~~~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~-------- 289 (365)
T TIGR03583 234 GVILDVGHGTASFSFH----------------VAEKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL-------- 289 (365)
T ss_pred eEEEEeCCCCCCchHH----------------HHHHHHhCCCCCcccccccccCCCccCccccHHHHHHHHH--------
Confidence 8877765222111000 1122333443 35566665321 1 12344444433
Q ss_pred CCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC-Chhhc--------cCCeEEEEEECCEE
Q 008063 506 NAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE-DFAAE--------VSASIEATYVSGVQ 576 (579)
Q Consensus 506 ~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~-~~~~~--------~~~~v~~v~v~G~~ 576 (579)
..|++++++++++|.|||+++|+++ .|+|++|+.|||+|+|.+.-. .+... +...++.|+++|++
T Consensus 290 -----~~g~~~~ea~~~~t~npa~~~gl~~-~g~i~~g~~ad~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 363 (365)
T TIGR03583 290 -----ALGYSLEEVIEKVTKNAAEILKLTQ-KGRLQEGYDADLTIFTVKAEPKKLTDSEGDSRIAEEQIKPLAVIIGGEY 363 (365)
T ss_pred -----HcCCCHHHHHHHHHHHHHHHhCCCC-CCCcCCCCcccEEEEecCCCCceeecCCCCEEEeccccceEEEEECCEE
Confidence 1359999999999999999999976 799999999999999964322 11111 13456889999997
Q ss_pred e
Q 008063 577 A 577 (579)
Q Consensus 577 v 577 (579)
+
T Consensus 364 ~ 364 (365)
T TIGR03583 364 Y 364 (365)
T ss_pred e
Confidence 4
No 96
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.88 E-value=3e-21 Score=186.56 Aligned_cols=346 Identities=20% Similarity=0.222 Sum_probs=226.4
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHh------hccCCCeEEeCCCCeeeccccccccccccc
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQ------LAADGTNVLNLQGKVVVPGFIDSHVHFIPG 115 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~------~~~~~~~viD~~g~~V~PG~ID~H~H~~~~ 115 (579)
....+++|.|+.|+|-.|. .+.+|.|+||||..||+...+.. ..++..++|-+.|++|+.|=||+|+|+-.+
T Consensus 64 ~~~~D~VITNa~IiD~~Gi--~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P 141 (568)
T COG0804 64 AGALDLVITNALIIDYWGI--VKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP 141 (568)
T ss_pred cCcccEEEeeeEEEeccce--EEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH
Confidence 4567899999999998664 77899999999999997543321 225677899999999999999999998432
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHHcCCCCCeEEEeCCCCCCCCCCCCChHHhhhhCCCCeEEEEeCCCchhhhcHHH
Q 008063 116 GLQMARVKLRGVSHKDEFVRRVKEAVKNSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVA 195 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ld~~~~~~p~~~~~~~~~~~~~n~~~ 195 (579)
.
T Consensus 142 q------------------------------------------------------------------------------- 142 (568)
T COG0804 142 Q------------------------------------------------------------------------------- 142 (568)
T ss_pred H-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHcCCCCCCCCCCCCeEEeCCCCCcCEEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCc
Q 008063 196 LQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGES 275 (579)
Q Consensus 196 ~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~ 275 (579)
.++.++.+|+|++...|.+...++
T Consensus 143 --------------------------------------------------------qi~~Al~sGiTtmiGGGtGpa~Gt 166 (568)
T COG0804 143 --------------------------------------------------------QIEEALASGITTMIGGGTGPADGT 166 (568)
T ss_pred --------------------------------------------------------HHHHHHhcCcEEEecCccCCCCCc
Confidence 456789999999988776554444
Q ss_pred cccc-hHHHHHHHHHHhhcCCCeeEEEEccCccc-h-hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCC
Q 008063 276 VQLS-WEDFADVYQWASYSEKMKIRVCLFFPLET-W-SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 352 (579)
Q Consensus 276 ~~~~-~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~ 352 (579)
..++ .+.-+.+.+.++....+++++.+..-... . ..+.+.+.. ++....+++.|.
T Consensus 167 ~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKGn~s~~~~L~Eqi~a----------------------Ga~GlKlHEDWG 224 (568)
T COG0804 167 NATTCTPGPWHIARMLQAADGLPMNIGFLGKGNASNPAPLAEQIEA----------------------GAIGLKLHEDWG 224 (568)
T ss_pred ccccccCCHHHHHHHHHhhhcCceeeEEeecCCCCCchhHHHHHhh----------------------ccceeEeecccC
Confidence 4333 45667788888888999999988654322 1 122222221 122334455555
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHH---HHHHHHHHHHHHHhcCCCCCCceEeeccC---CC-hhh
Q 008063 353 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRA---NDLVLDMYKSVVVTTGKRDQRFRIEHAQH---LA-SGT 425 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~i~H~~~---~~-~~~ 425 (579)
.++..+...+..|.++++++.+|...-.+ ++..+++++ +...+..|..- .+ ++.
T Consensus 225 ----------~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsGfvEdTi~A~~---------gRtIHtyHtEGAGGGHAPDi 285 (568)
T COG0804 225 ----------ATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTIAAIK---------GRTIHTYHTEGAGGGHAPDI 285 (568)
T ss_pred ----------CCHHHHHHHHhhhhhhceEEEEeecccccccchHhHHHHhc---------CceeEEeeccCCCCCCccHH
Confidence 68899999999999999999999864333 333333332 11222222221 12 333
Q ss_pred HHHHhhCCcEEEe-cccc-----------------------cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCC
Q 008063 426 AARFGDQGIVASM-QPQH-----------------------LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSD 481 (579)
Q Consensus 426 ~~~~~~~~i~~~~-~p~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD 481 (579)
++.....++-.+. .|.. ..++....++++. . +....-..|+|.|+.-.++||
T Consensus 286 ikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR---~-eTIAAEdiLhDmGafSmisSD 361 (568)
T COG0804 286 IKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESRIR---P-ETIAAEDILHDMGAFSMISSD 361 (568)
T ss_pred HHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhhhhccc---h-hhhhHHHHHhhccceEEeccc
Confidence 3333333432221 1211 1122222222332 2 455566778999999999999
Q ss_pred CCCCC------CCHHHHHHHHHc-ccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 482 WPVAD------INPLCAIRTAMK-RIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 482 ~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
+.... ...|+....+-. |....+.....+ .+-...-+..+|+|||-..|+++.+||+|+||.||||+|+.-
T Consensus 362 SQAMGRvGEvi~RtwQtA~kmK~qrG~L~~d~~~nD--N~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa 439 (568)
T COG0804 362 SQAMGRVGEVITRTWQTADKMKKQRGALPEDAGGND--NFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA 439 (568)
T ss_pred hHhhhccchhhhhHHHHHHHHHHhcCCCCCCCCCCc--cHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechh
Confidence 76543 456666555533 322222111122 234455678999999999999999999999999999999955
Q ss_pred CCCChhhccCCeEEEEEECCEEeC
Q 008063 555 SWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 555 ~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
-| ..++..|+++|-+.|
T Consensus 440 FF-------GvKP~~vlkgG~ia~ 456 (568)
T COG0804 440 FF-------GVKPELVLKGGMIAW 456 (568)
T ss_pred hc-------CCCcceEEecceeee
Confidence 43 558888999998765
No 97
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.88 E-value=6.5e-21 Score=195.25 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-----------hhHHHHhhCCc
Q 008063 367 SLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-----------GTAARFGDQGI 434 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-----------~~~~~~~~~~i 434 (579)
.+++.++.+++.|+++.+|+... ....++++.+ .....+.|+...+. +.+..+.+.|+
T Consensus 150 ~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l----------~~g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~ 219 (338)
T cd01307 150 PLELAKKIAKEADLPLMVHIGSPPPILDEVVPLL----------RRGDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGV 219 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHh----------cCCCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCE
Confidence 37889999999999999998733 3333333321 11247888887654 56788888898
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC------CCHHHHHHHHHcccCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD------INPLCAIRTAMKRIPPGWDNA 507 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~------~~~~~~~~~~~~~~~~~~~~~ 507 (579)
.+++...... ....+.+.+.+.|+ +..++||.+... ......++...
T Consensus 220 ~~d~~~G~~~----------------~~~~~~~~l~~~G~~~~~lstD~~~~~~~~~p~~~l~~~l~~l~---------- 273 (338)
T cd01307 220 IFDVGHGTAS----------------FSFRVARAAIAAGLLPDTISSDIHGRNRTNGPVYALATTLSKLL---------- 273 (338)
T ss_pred EEEeCCCCCc----------------hhHHHHHHHHHCCCCCeeecCCccccCCCCCccccHHHHHHHHH----------
Confidence 8775532100 11123466778897 567999975421 11223333221
Q ss_pred CCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCC
Q 008063 508 WIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSS 555 (579)
Q Consensus 508 ~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~ 555 (579)
..+++++++++++|.|||+++|++ .+|+|++|+.|||+|++.+-
T Consensus 274 ---~~gi~~ee~~~~~T~NpA~~lgl~-~~G~l~~G~~ad~~v~~~~~ 317 (338)
T cd01307 274 ---ALGMPLEEVIEAVTANPARMLGLA-EIGTLAVGYDADLTVFDLKD 317 (338)
T ss_pred ---HcCCCHHHHHHHHHHHHHHHcCCC-CCCccCCCCcCCEEEEeCCC
Confidence 236999999999999999999995 58999999999999998664
No 98
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.87 E-value=7.8e-21 Score=200.00 Aligned_cols=169 Identities=21% Similarity=0.282 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
.++.+.+.++.+++.|.++.+|+.+... ..+..+.+ .+. ...|+....++.++++ +.|+.+.+++.+.
T Consensus 119 ~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a~l~----aGi-----~~dH~~~~~eea~e~l-~~G~~i~i~~g~~ 186 (422)
T cd01295 119 GDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNAYMA----AGI-----STDHEAMTGEEALEKL-RLGMYVMLREGSI 186 (422)
T ss_pred CcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHHHHH----cCC-----CCCcCCCcHHHHHHHH-HCCCEEEEECccc
Confidence 4578899999999999999999987652 22222222 121 2248777666666666 6899999887764
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHH-HCCCeeeecCCCCCCCCCHH--HHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLL-ANNALLALGSDWPVADINPL--CAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~-~~Gi~v~~gsD~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
..+.+... +.+. +.+.+++++||.+.. .++. ..+...+.+. ...++++++|+
T Consensus 187 ~~~~~~~~---------------~~l~~~~~~~i~l~TD~~~~-~~~~~~g~~~~v~r~a---------~~~g~s~~eal 241 (422)
T cd01295 187 AKNLEALL---------------PAITEKNFRRFMFCTDDVHP-DDLLSEGHLDYIVRRA---------IEAGIPPEDAI 241 (422)
T ss_pred HhhHHHHH---------------HhhhhccCCeEEEEcCCCCc-hhhhhcchHHHHHHHH---------HHcCCCHHHHH
Confidence 22111111 1111 257899999998522 1111 1111122111 23469999999
Q ss_pred HHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 521 IAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 521 ~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
+++|.|||+++|+ +.+|+|+||+.|||++++.- ...++..||++|+.||
T Consensus 242 ~~aT~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~--------~~~~v~~v~~~G~~v~ 290 (422)
T cd01295 242 QMATINPAECYGL-HDLGAIAPGRIADIVILDDL--------ENFNITTVLAKGIAVV 290 (422)
T ss_pred HHHhHHHHHHcCC-CCCcccCCCCcCCEEEECCC--------CCCceEEEEECCeEEE
Confidence 9999999999999 55899999999999999831 2347999999999886
No 99
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=99.87 E-value=2.9e-21 Score=198.33 Aligned_cols=289 Identities=19% Similarity=0.182 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHHhcCCCCCCce
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWV 327 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (579)
.+..+.+.+...|+|++.++....| +..+.+.+....+.++. ...+++.++......++..+... .
T Consensus 25 d~~s~t~aA~~GGvTtv~~mPnt~P---~~~~~~~~~~~~~~a~~--~~~vd~~~~~~~~~~~~l~~~~~---------~ 90 (361)
T cd01318 25 DFVSGSRAAAAGGVTTVMDMPNTKP---PTTTAEALYEKLRLAAA--KSVVDYGLYFGVTGSEDLEELDK---------A 90 (361)
T ss_pred cHHHHHHHHHcCCCEEEEECCCCCC---CCCcHHHHHHHHHHhcc--CceeEEEEEEeecChhhHHHHHH---------h
Confidence 4566788899999999999864322 22233333333333322 22455554433322112333321 1
Q ss_pred EEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHH----------
Q 008063 328 YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLD---------- 397 (579)
Q Consensus 328 ~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~---------- 397 (579)
...|+|.+...... . .. .+...+.+.++.+. .++.+|+....-......
T Consensus 91 ~~~g~k~f~~~~~~------------~-----~~-~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~ 149 (361)
T cd01318 91 PPAGYKIFMGDSTG------------D-----LL-DDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESAHPR 149 (361)
T ss_pred hCcEEEEEEecCCC------------C-----cC-CCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCC
Confidence 23456666421000 0 00 35677888777764 789999974321110000
Q ss_pred ---------HHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC--CcEEEecccccccchhHHHH------hhChhhhh
Q 008063 398 ---------MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ--GIVASMQPQHLLDDADSARK------KLGVDRAE 460 (579)
Q Consensus 398 ---------~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~--~i~~~~~p~~~~~~~~~~~~------~l~~~~~~ 460 (579)
+..+...-.-..+.++++.|.... +.++++++. ++++.+||++...+.+.+.. ..+|.|..
T Consensus 150 ~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~--~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~ 227 (361)
T cd01318 150 IRDAEAAAVATARALKLARRHGARLHICHVSTP--EELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSR 227 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCH--HHHHHHHHhCCCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCH
Confidence 111111111113568889998764 356666655 89999999998766665542 12344444
Q ss_pred hhhhhHHHHHHCCCeeeecCCCC-CCCCCHHHHHHHHHcccCCC---CCC--CCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 461 RESYLFQSLLANNALLALGSDWP-VADINPLCAIRTAMKRIPPG---WDN--AWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 461 ~~~~~l~~l~~~Gi~v~~gsD~~-~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
+....+...+++|.+.+++||.. ....+.+..++.+..+...- ... .+..+.+++++++++++|.|||+++|++
T Consensus 228 ~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~~~~t~nPA~~lgl~ 307 (361)
T cd01318 228 EDRKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIK 307 (361)
T ss_pred HHHHHHHHHHhCCCCCEEeeCCCCCCHHHccCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 55666777899999999999953 32111110111111110000 000 0113456999999999999999999997
Q ss_pred CccccccCCCcccEEEeCCCCC-C-Chhhcc-------------CCeEEEEEECC
Q 008063 535 NDVGSLSPGKIADFVILSTSSW-E-DFAAEV-------------SASIEATYVSG 574 (579)
Q Consensus 535 ~~~G~I~~G~~ADlvvld~~~~-~-~~~~~~-------------~~~v~~v~v~G 574 (579)
+ +|+|++|+.|||+|+|.+.. . +.+.+. ..+|..||++|
T Consensus 308 ~-~G~i~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 308 N-KGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred C-CCccCCCCcCCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEeCc
Confidence 6 79999999999999997642 2 222221 55777888776
No 100
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=99.85 E-value=8.4e-20 Score=189.48 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHH------------------------HHHHHHHHHHHhcCCCCCCceEeec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRAND------------------------LVLDMYKSVVVTTGKRDQRFRIEHA 418 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i~H~ 418 (579)
.+...+.++++.+++.|.++.+|+....-.+ ..+...-...+.+ +.+.++.|+
T Consensus 117 ~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~---~~~i~i~h~ 193 (374)
T cd01317 117 QDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLPGIPPEAETIMVARDLELAEAT---GARVHFQHL 193 (374)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh---CCcEEEEeC
Confidence 5677899999999999999999995221110 0111111122222 357788888
Q ss_pred cCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC-
Q 008063 419 QHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNALLALGSDWPVADIN- 488 (579)
Q Consensus 419 ~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~- 488 (579)
..-.. +.+...++.| +...++|++...+.+.+.. ..++.|..+...++..++++|+.+++|||.+.....
T Consensus 194 ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~ 273 (374)
T cd01317 194 STARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEE 273 (374)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHH
Confidence 74222 3444555555 6778888887655554422 223344434678899999999999999998654321
Q ss_pred ---HHH-----------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC
Q 008063 489 ---PLC-----------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 554 (579)
Q Consensus 489 ---~~~-----------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~ 554 (579)
.+. .+..++... .....++++++++++|.|||+++|+++ |+|++|+.|||+++|.+
T Consensus 274 k~~~~~~~~~Gi~g~e~~l~~~~~~~--------~~~~~~~~~~~~~~~t~npA~~lgl~~--G~l~~G~~ADlvi~d~~ 343 (374)
T cd01317 274 KDLPFAEAPPGIIGLETALPLLWTLL--------VKGGLLTLPDLIRALSTNPAKILGLPP--GRLEVGAPADLVLFDPD 343 (374)
T ss_pred ccCCHhhCCCcHhHHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhCCCC--CcccCCCcCCEEEECCC
Confidence 111 111112111 123458999999999999999999973 99999999999999977
Q ss_pred C
Q 008063 555 S 555 (579)
Q Consensus 555 ~ 555 (579)
.
T Consensus 344 ~ 344 (374)
T cd01317 344 A 344 (374)
T ss_pred C
Confidence 4
No 101
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=99.82 E-value=7.5e-19 Score=179.40 Aligned_cols=259 Identities=19% Similarity=0.180 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCcc---chhhHHHHHHhcCCCC
Q 008063 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE---TWSSLADLINKTGHVL 323 (579)
Q Consensus 247 ~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~---~~~~~~~~~~~~~~~~ 323 (579)
+.+..+.+.+...|+|++.++....| +..+.+.+....+.++... .+++.++.... +..+..+...
T Consensus 24 e~~~t~t~aA~~GG~Ttv~~mpn~~p---~~~~~~~~~~~~~~a~~~~--~~d~~~~~~~~~~~~~~el~~l~~------ 92 (337)
T cd01302 24 EDFESGSRAAAAGGVTTVIDMPNTGP---PPIDLPAIELKIKLAEESS--YVDFSFHAGIGPGDVTDELKKLFD------ 92 (337)
T ss_pred hHHHHHHHHHHhCCCcEEEECCCCCC---CCCcHHHHHHHHHHhCcCc--EeeEEEEEeccCccCHHHHHHHHH------
Confidence 35566788899999999999864322 2223333333444433322 34444332222 2222222211
Q ss_pred CCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHH
Q 008063 324 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVV 403 (579)
Q Consensus 324 ~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~ 403 (579)
....++|++...... . ....+.+.+.+.++.+.+.|.++.+|+. +.+...+
T Consensus 93 ---~Gv~g~K~f~~~~~~------------~-----~~~~~~~~l~~~~~~~~~~g~~v~~H~E------r~~~la~--- 143 (337)
T cd01302 93 ---AGINSLKVFMNYYFG------------E-----LFDVDDGTLMRTFLEIASRGGPVMVHAE------RAAQLAE--- 143 (337)
T ss_pred ---cCCcEEEEEEeccCC------------C-----ccccCHHHHHHHHHHHHhcCCeEEEeHH------HHHHHHH---
Confidence 123356665421000 0 0125678899999999999999999994 2222111
Q ss_pred HhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHHHH------hhChhhhhhhhhhHHHHHHCCC
Q 008063 404 VTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARK------KLGVDRAERESYLFQSLLANNA 474 (579)
Q Consensus 404 ~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~~~------~l~~~~~~~~~~~l~~l~~~Gi 474 (579)
. .+.+.++.|...... +.++.+++.| +++.+||++...+.+.+.. ..++.|..+....+...+++|.
T Consensus 144 -~---~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~ 219 (337)
T cd01302 144 -E---AGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGK 219 (337)
T ss_pred -H---hCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 1 245778999875332 4444455554 6778999998765544422 2344555456677888999999
Q ss_pred eeeecCCCCCCCCCH------HH-------HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCcccccc
Q 008063 475 LLALGSDWPVADINP------LC-------AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLS 541 (579)
Q Consensus 475 ~v~~gsD~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~ 541 (579)
...++||........ +. .+...+... .....+.+++++++++++|.|||+++|+.+ .|+|+
T Consensus 220 id~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~~~-----~~~~~~~~i~~~~~~~~~s~~pA~~~gl~~-~g~i~ 293 (337)
T cd01302 220 IDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPIL-----LTEGVKRGLSLETLVEILSENPARIFGLYP-KGTIA 293 (337)
T ss_pred CCEEecCCCCCCHHHhccCCCcccCCCCcccHHHHHHHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-CCccc
Confidence 999999975432110 00 001100000 000123469999999999999999999976 69999
Q ss_pred CCCcccEEEeCCCC
Q 008063 542 PGKIADFVILSTSS 555 (579)
Q Consensus 542 ~G~~ADlvvld~~~ 555 (579)
+|+.|||+|+|.+.
T Consensus 294 ~G~~ADlvi~d~~~ 307 (337)
T cd01302 294 VGYDADLVIVDPKK 307 (337)
T ss_pred cCCcCCEEEEeCCC
Confidence 99999999999874
No 102
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.81 E-value=5.3e-19 Score=181.27 Aligned_cols=165 Identities=23% Similarity=0.236 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHHH-----C-CCeEEEEecchHHH---------HHHHHHHHHHHHhcCCC-----CCCceEeeccCCC
Q 008063 363 MELESLLSMTMASDK-----S-GLQVAIHAIGDRAN---------DLVLDMYKSVVVTTGKR-----DQRFRIEHAQHLA 422 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~-----~-g~~i~iH~~g~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~i~H~~~~~ 422 (579)
++.+.+...++.+++ . +.++.+|+.+.... ...++.+ ...+.. +....+.|+.+++
T Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~~~ 216 (333)
T PF01979_consen 141 VSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEAL----DHLGLLEEAIDDGVDLIAHGTHLS 216 (333)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHH----HHHHSCHHHHHHHCEEEEEHTTSE
T ss_pred chhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhh----ccchhhhhhcccccceeeccccCC
Confidence 678889999999988 3 99999999865443 0011111 111111 3477899999999
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHH---hhCh----hhhhhhhhhHHHHHHC-CCeeeecCCCCCCCCCHHHHHH
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARK---KLGV----DRAERESYLFQSLLAN-NALLALGSDWPVADINPLCAIR 494 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~---~l~~----~~~~~~~~~l~~l~~~-Gi~v~~gsD~~~~~~~~~~~~~ 494 (579)
+++++++++.+..+..||..+........+ ..+. ........++..+.+. |+. +|||+.. ++++
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~~------~~l~ 288 (333)
T PF01979_consen 217 DEEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDGVA------EELK 288 (333)
T ss_dssp HHHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCTTC------HHHH
T ss_pred HHHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--ccccccc------cccc
Confidence 999999999999999999876420000000 0000 0001333456666666 888 9999322 6666
Q ss_pred HHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeC
Q 008063 495 TAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILS 552 (579)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld 552 (579)
.++.. +++++++|+|+|.|||+.||+++++|+|++||+|||||||
T Consensus 289 ~~~~~-------------~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 289 LFVRL-------------GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHHHH-------------HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ccccc-------------cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 66543 2899999999999999999998889999999999999997
No 103
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.80 E-value=8.8e-19 Score=173.13 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=103.6
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccch
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDA 447 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 447 (579)
++++++.|+++|+++++|+.+..... ....++.+.. .+ ...+.|+.++++++++++++.|+.+++||.++.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-g~~~i~~~~~-~~----~~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~--- 197 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-GMTDIERALD-LE----PDLLVHGTHLTDEDLELVRENGVPVVLCPRSNL--- 197 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-CchhHHHHHh-CC----CCEEEEcCCCCHHHHHHHHHcCCcEEEChhhHH---
Confidence 99999999999999999998653210 0001111111 11 345899999999999999999999999998765
Q ss_pred hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC-CCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 448 DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV-ADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 448 ~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
.++ ...+|++.++++|+++++|||... .+.+++.+++.++.+... ...++++++|+++|.|
T Consensus 198 -----~l~-----~g~~p~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~aT~~ 259 (263)
T cd01305 198 -----YFG-----VGIPPVAELLKLGIKVLLGTDNVMVNEPDMWAEMEFLAKYSRL--------QGYLSPLEILRMATVN 259 (263)
T ss_pred -----HhC-----CCCCCHHHHHHCCCcEEEECCCCccCCCCHHHHHHHHHHHhcc--------cccCCHHHHHHHHhhc
Confidence 222 445689999999999999999753 457999999988764321 1157999999999999
Q ss_pred HHHh
Q 008063 527 AARA 530 (579)
Q Consensus 527 pA~~ 530 (579)
+|++
T Consensus 260 gA~~ 263 (263)
T cd01305 260 AAEF 263 (263)
T ss_pred cccC
Confidence 9974
No 104
>PRK06886 hypothetical protein; Validated
Probab=99.78 E-value=4.9e-17 Score=163.03 Aligned_cols=267 Identities=13% Similarity=0.096 Sum_probs=172.5
Q ss_pred EEEhHhHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEE
Q 008063 223 GLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCL 302 (579)
Q Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 302 (579)
|.+.|+. +...+.-+..+.+++++.....++.++.+|+|.+..+-... .......++...++.++.+ ..+.+.++.
T Consensus 46 g~l~e~i-~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd-~~~~l~~~~a~~~~r~~~~--~~idlq~va 121 (329)
T PRK06886 46 ANLQQKW-DLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDID-PICEDRAIIAAHKAREVYK--HDIILKFAN 121 (329)
T ss_pred CCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccC-CCccccHHHHHHHHHHHhc--CcceEEEEe
Confidence 4455542 22333445678899999999999999999999998764221 1112344555555554443 445566654
Q ss_pred ccCccch--hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCC
Q 008063 303 FFPLETW--SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGL 380 (579)
Q Consensus 303 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~ 380 (579)
+ |...+ +...++....... .+ .+++. |+.+.. -...+.+.+..+++.|+++|+
T Consensus 122 f-Pq~g~~~~~~~~l~~~al~~-ad-------------vvGGi------P~~~~~----~~~~~~e~l~~~~~lA~~~g~ 176 (329)
T PRK06886 122 Q-TLKGVIEPTAKKWFDIGSEM-VD-------------MIGGL------PYRDEL----DYGRGLEAMDILLDTAKSLGK 176 (329)
T ss_pred c-ChhhccCccHHHHHHHHHHh-CC-------------EEeCc------cCCcCC----CCCCCHHHHHHHHHHHHHcCC
Confidence 3 21111 1112222111100 01 11111 222110 011567899999999999999
Q ss_pred eEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh-------HHHHhhCCcEEEecccccccchhHHHH
Q 008063 381 QVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT-------AARFGDQGIVASMQPQHLLDDADSARK 452 (579)
Q Consensus 381 ~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~-------~~~~~~~~i~~~~~p~~~~~~~~~~~~ 452 (579)
++++|+.+. ......++.+.+.....|..+ +..+.||..+++.+ ++++++.|+.+++||.++...+... .
T Consensus 177 ~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~g-rV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~~-~ 254 (329)
T PRK06886 177 MVHVHVDQFNTPKEKETEQLCDKTIEHGMQG-RVVAIHGISIGAHSKEYRYRLYQKMREADMMVIACPMAWIDSNRKE-D 254 (329)
T ss_pred CeEEeECCCCchhHHHHHHHHHHHHHcCCCC-CEEEEEeccccCcChhhHHHHHHHHHHcCCeEEECchhhhhhcccc-c
Confidence 999999843 223445555555555677765 89999999998765 9999999999999999865211000 0
Q ss_pred hhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC------CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 453 KLGVDRAERESYLFQSLLANNALLALGSDWPVA------DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 453 ~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
..+ .. +..+|++.|.++||+|++|||+..+ ..++++.++.+...... .+++++++|+|.|
T Consensus 255 ~~p--~~-rGv~pv~eL~~aGV~V~lGtDnv~D~~~p~g~~Dmle~~~l~~~~~~~-----------~~~~~~l~maT~~ 320 (329)
T PRK06886 255 LMP--FH-NALTPADEMIPEGITVALGTDNICDYMVPLCEGDMWQELSLLAAGCRF-----------YDLDEMVNIASIN 320 (329)
T ss_pred cCc--CC-CCCCCHHHHHHCCCeEEEecCCCcccCCCCCCCCHHHHHHHHHHHcCC-----------CCHHHHHHHHhhh
Confidence 011 11 5678999999999999999998643 47888888887653321 3799999999999
Q ss_pred HHHhcccC
Q 008063 527 AARACFLE 534 (579)
Q Consensus 527 pA~~lgl~ 534 (579)
+|+.||++
T Consensus 321 gAraLgl~ 328 (329)
T PRK06886 321 GRKVLGLE 328 (329)
T ss_pred HHHHhCCC
Confidence 99999985
No 105
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.78 E-value=1.6e-17 Score=166.00 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
++.+.++++++.|++.|+++.+|+... ..++...+ .| ...+.| ..+.+.+..+++.|+.+..++.
T Consensus 160 ~~~~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~~--------~G----v~~~E~--p~t~e~a~~a~~~G~~vv~gap 225 (325)
T cd01306 160 YAPANRSELAALARARGIPLASHDDDTPEHVAEAHE--------LG----VVISEF--PTTLEAAKAARELGLQTLMGAP 225 (325)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEecCCChHHHHHHHH--------CC----CeeccC--CCCHHHHHHHHHCCCEEEecCc
Confidence 457889999999999999999999643 22222222 12 122333 3688899999999999987754
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALI 521 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~ 521 (579)
..... +. .....+++.+++.|+.++++||.. +.+.+....... ...++++.++|+
T Consensus 226 n~lrg--------~s---~~g~~~~~~ll~~Gv~~al~SD~~--p~sll~~~~~la------------~~~gl~l~eAl~ 280 (325)
T cd01306 226 NVVRG--------GS---HSGNVSARELAAHGLLDILSSDYV--PASLLHAAFRLA------------DLGGWSLPEAVA 280 (325)
T ss_pred ccccC--------cc---ccccHhHHHHHHCCCeEEEEcCCC--cHhHHHHHHHHH------------HHcCCCHHHHHH
Confidence 32100 00 023456889999999999999984 223333332222 234699999999
Q ss_pred HHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECC
Q 008063 522 AHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSG 574 (579)
Q Consensus 522 ~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G 574 (579)
++|.|||+.+|+++ +|+|++|+.||||+++.+. ....+..||++|
T Consensus 281 ~aT~nPA~~lGl~d-~G~I~~G~~ADlvvvd~~~-------~~p~v~~v~~~G 325 (325)
T cd01306 281 LVSANPARAVGLTD-RGSIAPGKRADLILVDDMD-------GVPVVRTVWRGG 325 (325)
T ss_pred HHhHHHHHHcCCCC-CCCcCCCCCCCEEEEeCCC-------CCCccceEEeCc
Confidence 99999999999985 7999999999999999763 133788999988
No 106
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.77 E-value=3e-17 Score=159.36 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=71.8
Q ss_pred HCCCeeeecCCCCCCCC--CHHHHHHHHHcccCC------------CCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 471 ANNALLALGSDWPVADI--NPLCAIRTAMKRIPP------------GWDNAWIPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 471 ~~Gi~v~~gsD~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
+.--.+.+.||+|...+ ...+.|-+.+....+ ..+..-.-+..++++|+..+.-.+|||.||++++
T Consensus 381 ~dp~kv~lTTD~PNgGpFt~YP~v~awlMS~k~R~~~i~~~hkwa~~rs~l~~idrE~t~~eia~~TRa~~ak~lgl~e~ 460 (575)
T COG1229 381 NDPWKVVLTTDSPNGGPFTRYPEVMAWLMSEKYREEWIEGVHKWAQDRSALAGIDRELTLYELAIMTRANPAKVLGLSER 460 (575)
T ss_pred cCCCeEEEeccCCCCCCccccHHHHHHHHhHHHHHHHHhhhhHhhhhhcccccccccccHHHHHHHHhcChhhhcccccc
Confidence 33456889999886642 222222222211100 1112223455689999999999999999999999
Q ss_pred cccccCCCcccEEEeCCCCCC-C----hhhccC--CeEEEEEECCEEe
Q 008063 537 VGSLSPGKIADFVILSTSSWE-D----FAAEVS--ASIEATYVSGVQA 577 (579)
Q Consensus 537 ~G~I~~G~~ADlvvld~~~~~-~----~~~~~~--~~v~~v~v~G~~v 577 (579)
+|.|-+|.+||+.|.|-||.+ | .+.+.+ .+...|+++|++|
T Consensus 461 kGhLg~GadadIaiYdlnP~~vDps~dye~v~kaf~~A~ytlK~GeIv 508 (575)
T COG1229 461 KGHLGVGADADIAIYDLNPEQVDPSNDYEKVEKAFRKAAYTLKGGEIV 508 (575)
T ss_pred cCccCcCccCceEEEecChhhcCCcccHHHHHHHHhheeEEecCceEE
Confidence 999999999999999999864 3 232221 2667788888776
No 107
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=1.4e-15 Score=148.91 Aligned_cols=65 Identities=35% Similarity=0.710 Sum_probs=57.0
Q ss_pred CccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHHHHhhccCCC---eEEeCCCCeeecccccccccccc
Q 008063 44 EADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSAVQQLAADGT---NVLNLQGKVVVPGFIDSHVHFIP 114 (579)
Q Consensus 44 ~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~~~~~~~~~~---~viD~~g~~V~PG~ID~H~H~~~ 114 (579)
.-+++|+++.|+|++|..+...+|.|+||+|++|+.... .+. +.||+.|++|.|||||+|+|-..
T Consensus 5 ~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~------dg~~~~eevDaagriVaPGFIDvHtHyD~ 72 (579)
T COG3653 5 TYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGAL------DGTGCPEEVDAAGRIVAPGFIDVHTHYDA 72 (579)
T ss_pred eeeEEEeeceEEeCCCCCccccccccccceEEEEecccc------cccCCCeeecccCcEecccEEEeeecccc
Confidence 457999999999999988888899999999999997543 333 78999999999999999999743
No 108
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.64 E-value=2.8e-15 Score=150.66 Aligned_cols=77 Identities=32% Similarity=0.360 Sum_probs=61.1
Q ss_pred hhhhhHHHHHHCCCeeeecCCCCC----CCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCc
Q 008063 461 RESYLFQSLLANNALLALGSDWPV----ADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLEND 536 (579)
Q Consensus 461 ~~~~~l~~l~~~Gi~v~~gsD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~ 536 (579)
.....++.++++|++++++||... .+.+.+..+...+. ..|+++++|++++|.|||++||++++
T Consensus 224 ~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~------------~~gl~~~~al~~~T~~pA~~lgl~~~ 291 (304)
T PF13147_consen 224 EDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAV------------RAGLSPEEALRAATSNPARILGLDDD 291 (304)
T ss_dssp HHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHH------------HTSSTHHHHHHHHTHHHHHHTTBTTT
T ss_pred hhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHh------------hcCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 556678899999999999999875 33445544444433 24699999999999999999999878
Q ss_pred cccccCCCcccEE
Q 008063 537 VGSLSPGKIADFV 549 (579)
Q Consensus 537 ~G~I~~G~~ADlv 549 (579)
+|+|++||.||||
T Consensus 292 ~G~i~~G~~ADlv 304 (304)
T PF13147_consen 292 KGSIAPGKDADLV 304 (304)
T ss_dssp SSSTSTTSB-EEE
T ss_pred CccCCCCCCCCcC
Confidence 9999999999997
No 109
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=99.64 E-value=7.4e-14 Score=142.01 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=108.4
Q ss_pred HHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCC--cEEEecccccccchhHH
Q 008063 374 ASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSA 450 (579)
Q Consensus 374 ~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~--i~~~~~p~~~~~~~~~~ 450 (579)
.+...+.++.+|+.. ..+...+...+. .+.+.++.|...... +.++..++.| +++.+||++...+.+.+
T Consensus 120 ~~~~~~~p~~~~~e~-~~~~~~l~la~~-------~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~ 191 (344)
T cd01316 120 NAWPSTKPIVTHAKS-QTLAAVLLLASL-------HNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDL 191 (344)
T ss_pred HhcccCCCeEEehhh-HHHHHHHHHHHH-------HCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHh
Confidence 344457888888842 222222322221 245788999876332 3333344444 78899999998766654
Q ss_pred ----HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC---------HHHHHHHHHcccCCCCCCCCCCCCCCCHH
Q 008063 451 ----RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN---------PLCAIRTAMKRIPPGWDNAWIPSERISLT 517 (579)
Q Consensus 451 ----~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ls~~ 517 (579)
.+..+|.|..+....+.+.+. ....++||.+..... ....+...+.-.. ....+.++++.
T Consensus 192 ~~~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-----~~v~~~~i~l~ 264 (344)
T cd01316 192 PRGQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-----TAVHEGRLTIE 264 (344)
T ss_pred hcCCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-----HHHHcCCCCHH
Confidence 334455555455555555554 367999997543211 1111111111000 01134569999
Q ss_pred HHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCC-CCC-------------Chhhc-cCCeEEEEEECCEEeC
Q 008063 518 DALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS-SWE-------------DFAAE-VSASIEATYVSGVQAY 578 (579)
Q Consensus 518 ~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~-~~~-------------~~~~~-~~~~v~~v~v~G~~v~ 578 (579)
+++++.+.|||+.+|+.. + .+||||+|.+ .|. +++.. ...+|..||++|++||
T Consensus 265 ~l~~~~s~nPAk~~gl~~-------~-~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~rG~~v~ 332 (344)
T cd01316 265 DIVDRLHTNPKRIFNLPP-------Q-SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAF 332 (344)
T ss_pred HHHHHHHHhHHHHhCCCC-------C-CCCEEEEeCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEE
Confidence 999999999999999864 2 3479999954 222 12211 1669999999999987
No 110
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.3e-14 Score=132.35 Aligned_cols=60 Identities=38% Similarity=0.471 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeCC
Q 008063 510 PSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP 579 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~~ 579 (579)
+..+.+.+-||+++|..||+.||+++.+|++..|.+||||++|.+. .|..||+.|+.||.
T Consensus 345 kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~l----------~V~aT~isG~~V~~ 404 (407)
T KOG3892|consen 345 KATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDSL----------HVQATYISGELVWQ 404 (407)
T ss_pred HhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccce----------EEEEEEEccEEEEe
Confidence 3456899999999999999999999999999999999999999654 89999999999984
No 111
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.52 E-value=1.1e-12 Score=130.02 Aligned_cols=234 Identities=27% Similarity=0.282 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccch---------
Q 008063 239 EVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETW--------- 309 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~--------- 309 (579)
..++++.+.........+.+.|+|++.++....+... .........+.+.+.. ++++.........
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 101 (275)
T cd01292 27 ELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTT---TKAAIEAVAEAARASA--GIRVVLGLGIPGVPAAVDEDAE 101 (275)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccc---cchHHHHHHHHHHHhc--CeeeEEeccCCCCccccchhHH
Confidence 3456788888899999999999999999765332211 1122333333333322 3444432211111
Q ss_pred hhHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecch
Q 008063 310 SSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGD 389 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~ 389 (579)
+...+.+..... ....|++.. .++.. ...+.+.++++++.++++++++.+|+.+.
T Consensus 102 ~~~~~~i~~~~~-----~~~~gi~~~-------------~~~~~-------~~~~~~~~~~~~~~a~~~~~~i~~H~~~~ 156 (275)
T cd01292 102 ALLLELLRRGLE-----LGAVGLKLA-------------GPYTA-------TGLSDESLRRVLEEARKLGLPVVIHAGEL 156 (275)
T ss_pred HHHHHHHHHHHh-----cCCeeEeeC-------------CCCCC-------CCCCcHHHHHHHHHHHHcCCeEEEeeCCc
Confidence 111122211000 112223221 11110 00367899999999999999999999755
Q ss_pred HH----HHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhh
Q 008063 390 RA----NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYL 465 (579)
Q Consensus 390 ~~----~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 465 (579)
.. +...++... . +.+..+.|+...+++.++++++.|+.+++||.++.... .+. ....+
T Consensus 157 ~~~~~~~~~~~~~~~-------~-~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~-~~~~~ 218 (275)
T cd01292 157 PDPTRALEDLVALLR-------L-GGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLG---------RDG-EGAEA 218 (275)
T ss_pred ccCccCHHHHHHHHh-------c-CCCEEEECCccCCHHHHHHHHHcCCeEEECCccccccc---------CCc-CCccc
Confidence 42 333333221 1 45889999999999999999999999999999875321 011 44557
Q ss_pred HHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHh
Q 008063 466 FQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARA 530 (579)
Q Consensus 466 l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~ 530 (579)
++.+++.|+++++|||++.. ..+++..++.++.... .+++.+++++++|.|||++
T Consensus 219 ~~~~~~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 219 LRRLLELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLR----------LGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHCCCcEEEecCCCCCCCCCCHHHHHHHHHHHHh----------cCCCHHHHHHHHhccccCC
Confidence 89999999999999998764 4788888887765332 2389999999999999974
No 112
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=99.52 E-value=2.7e-12 Score=131.36 Aligned_cols=171 Identities=14% Similarity=0.123 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHH-H------HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhC--Cc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRA-N------DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ--GI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~-~------~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~--~i 434 (579)
+.+.+.++++.+.+.|+++.+|+....- . .........+...+ .+.+.++.|.. +.+.++.+++. ++
T Consensus 111 d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~--p~~~v~i~Hvs--t~~~~~~i~~ak~~v 186 (335)
T cd01294 111 DLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRF--PKLKIVLEHIT--TADAVEYVKSCNENV 186 (335)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHc--CCCeEEEeccc--HHHHHHHHHhCCCCc
Confidence 4578999999999999999999963321 0 01111122222222 25688899985 45555555443 69
Q ss_pred EEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCCCC---------HHHHHHHH
Q 008063 435 VASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALL-ALGSDWPVADIN---------PLCAIRTA 496 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~~~---------~~~~~~~~ 496 (579)
++.+||++...+.+.+. +..+|.|.++....+.+.+..|... .++||.+..... ....+...
T Consensus 187 t~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~ 266 (335)
T cd01294 187 AATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIA 266 (335)
T ss_pred EEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHHHH
Confidence 99999999887665542 2345556556677788888899988 599997543211 11111101
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCC
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGK 544 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~ 544 (579)
+.... .... .++++++++++.+.|||+.+|+..++|+|.+|+
T Consensus 267 l~~~~-----~~~~-~~l~l~~~v~~~s~nPA~i~gl~~~kg~i~~~~ 308 (335)
T cd01294 267 LPYLA-----EVFE-EHNALDKLEAFASDNGPNFYGLPPNKKTITLVK 308 (335)
T ss_pred HHHHH-----HHHh-ccCCHHHHHHHHHhHHHHHhCCCCCCCeEEEEe
Confidence 10000 0012 369999999999999999999976566666554
No 113
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.29 E-value=3.1e-12 Score=97.88 Aligned_cols=44 Identities=45% Similarity=0.797 Sum_probs=34.8
Q ss_pred EEEECCEEEEecChHHHHhhccCCCeEEeCCCCeeeccccccccccc
Q 008063 67 MAIKNGRIVSVGNYSAVQQLAADGTNVLNLQGKVVVPGFIDSHVHFI 113 (579)
Q Consensus 67 v~I~~GkI~~Ig~~~~~~~~~~~~~~viD~~g~~V~PG~ID~H~H~~ 113 (579)
|+|+||||++|++..+.+ .++.++||++|++|+|||||+|+|+.
T Consensus 1 V~I~~g~I~~v~~~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELP---ADAAEVIDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEEETTEEEEEESSCCTT---STCCEEEEETTCEEEE-EEEEEE-TT
T ss_pred CEEECCEEEEeCCCCCCC---CCCCEEEECCCCEEeCCeEeeeeccc
Confidence 789999999996544433 25668999999999999999999975
No 114
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=99.28 E-value=3.9e-10 Score=115.08 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p 440 (579)
.+.+.++.+++.|++.|+++.+|+.+........++++.. + ...+.|+.++ ++++++++++.|+.+++||
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~----g----~~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P 241 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLL----G----AERIGHGIRAIEDPELVKRLAERNIPLEVCP 241 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHc----C----CcccchhhccCccHHHHHHHHHcCCeEEECC
Confidence 3678999999999999999999998654444444433322 2 2368999999 4668999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.++... +.... ....|++.++++|+++++|||.+... .+++.+++.++.. .++++++
T Consensus 242 ~sn~~l--------~~~~~-~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~------------~~l~~~e- 299 (325)
T cd01320 242 TSNVQT--------GAVKS-LAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEA------------FGLTEEE- 299 (325)
T ss_pred Cccccc--------cccCC-cccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHH------------cCCCHHH-
Confidence 988632 21111 23568999999999999999986543 5677777777653 3589999
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
|..+|.|++++..+.
T Consensus 300 l~~~~~na~~~~f~~ 314 (325)
T cd01320 300 LKKLARNAVEASFLS 314 (325)
T ss_pred HHHHHHHHHHHhCCC
Confidence 555789999988765
No 115
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=99.19 E-value=2.3e-09 Score=109.28 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p 440 (579)
.+.+.+.++++.|++.|+++++|+.+.........+.. ..| ...+.|+.++ ++++++++++.|+.+++||
T Consensus 169 ~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~----~~g----~~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP 240 (324)
T TIGR01430 169 GPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALD----DLG----ATRIGHGVRALEDPELLKRLAQENITLEVCP 240 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHH----HcC----chhcchhhhhccCHHHHHHHHHcCceEEECC
Confidence 45788999999999999999999985422222222221 223 2468999998 6679999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.++...+. . .. ....|++.++++|+++++|||.+... .++..+++.++.. .++++++
T Consensus 241 ~Sn~~l~~-----~-~~---~~~~pi~~l~~~Gv~v~igTD~~~~~~~~l~~e~~~a~~~------------~~l~~~e- 298 (324)
T TIGR01430 241 TSNVALGV-----V-KS---LAEHPLRRFLEAGVKVTLNSDDPAYFGSYLTEEYEIAAKH------------AGLTEEE- 298 (324)
T ss_pred cccccccc-----c-CC---cccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHH------------cCCCHHH-
Confidence 99873220 0 00 23568999999999999999976443 4788888888753 3599999
Q ss_pred HHHHcHHHHHhcccCC
Q 008063 520 LIAHTLSAARACFLEN 535 (579)
Q Consensus 520 l~~~T~npA~~lgl~~ 535 (579)
|..+|.|+++...+++
T Consensus 299 l~~~~~na~~~~f~~~ 314 (324)
T TIGR01430 299 LKQLARNALEGSFLSD 314 (324)
T ss_pred HHHHHHHHHHHhCCCH
Confidence 8899999999988753
No 116
>PRK05451 dihydroorotase; Provisional
Probab=99.18 E-value=4.2e-09 Score=107.85 Aligned_cols=170 Identities=12% Similarity=0.150 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHH--------HHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHh--hCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRA--------NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFG--DQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~--~~~ 433 (579)
+++.+.++++.+.+.|+++.+|+..... .....+.+..+.... .+.+.++.|+.. .+.++.++ ..+
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~--pg~~lhI~Hlst--~~~~e~i~~a~~~ 191 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRF--PKLKIVFEHITT--KDAVDYVREANDN 191 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhc--CCCcEEEEecCc--HHHHHHHHhcCCC
Confidence 5778999999999999999999863111 111111122222232 256889999853 44444443 347
Q ss_pred cEEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCC---------CCHHHHHHH
Q 008063 434 IVASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNALL-ALGSDWPVAD---------INPLCAIRT 495 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~---------~~~~~~~~~ 495 (579)
+++.+||++...+.+.+. +..+|.|.++....+.+.+..|... .++||.+... ...++....
T Consensus 192 it~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~ 271 (345)
T PRK05451 192 LAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPA 271 (345)
T ss_pred EEEEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHH
Confidence 889999999887665542 2345677667778888999999999 7999976442 111222111
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPG 543 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G 543 (579)
++.... ..+ ... .++++++++.+.|||+.+|+..++|+|.+|
T Consensus 272 g~~~~~----~~~-~~~-~~l~~~v~~~s~nPAkifGl~~~KG~i~~~ 313 (345)
T PRK05451 272 ALELYA----EVF-EEA-GALDKLEAFASLNGPDFYGLPRNTDTITLV 313 (345)
T ss_pred HHHHHH----HHH-HcC-CCHHHHHHHHhHHHHHHhCCCCCCCeEEEE
Confidence 111000 001 122 399999999999999999998889999888
No 117
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=99.15 E-value=4.9e-09 Score=106.79 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecch-HHH-------HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHh--hCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGD-RAN-------DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFG--DQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~-------~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~--~~~ 433 (579)
+.+.+.++++.+++.|+++.+|+... ..+ ......+..+.... .+.+.++.|... .+.++.++ +..
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~~~--~~~~~~i~H~st--~~~~~~i~~a~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRF--PALKVVLEHITT--KDAIDYVEDGNNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHHHc--cCCeEEEEecCc--HHHHHHHHHcCCC
Confidence 45789999999999999999999643 111 11111222211222 245788888755 33333333 234
Q ss_pred cEEEecccccccchhHHHH--------hhChhhhhhhhhhHHHHHHCCCee-eecCCCCCCCC---------CHHHHHHH
Q 008063 434 IVASMQPQHLLDDADSARK--------KLGVDRAERESYLFQSLLANNALL-ALGSDWPVADI---------NPLCAIRT 495 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~--------~l~~~~~~~~~~~l~~l~~~Gi~v-~~gsD~~~~~~---------~~~~~~~~ 495 (579)
+++.+||++...+.+.+.. ..+|.|..+....+.+.+..|... .++||.+..+. .....+..
T Consensus 189 vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~~~~~~G~~g~e~ 268 (341)
T TIGR00856 189 LAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKESSCGCAGCFSAPT 268 (341)
T ss_pred EEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCCCCCCCCcccHHH
Confidence 8899999998876665432 345666656677788889999998 69999764421 11111111
Q ss_pred HHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCC
Q 008063 496 AMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWE 557 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~ 557 (579)
.+.... ..+ . .++++++++++.+.|||+.+|+.. | .|||+|++ ..|.
T Consensus 269 ~l~~~~----~~~-~-~~~~l~~~v~~~s~nPAk~~gl~~--~------dAdi~~~~-~~~~ 315 (341)
T TIGR00856 269 ALPSYA----EVF-E-EMNALENLEAFCSDNGPQFYGLPV--N------STKIELVK-KEQQ 315 (341)
T ss_pred HHHHHH----HHH-h-cCCCHHHHHHHHhHhHHHHhCCCC--C------CceEEEEe-ccEE
Confidence 111100 011 2 268999999999999999999942 4 89999995 4443
No 118
>PRK09358 adenosine deaminase; Provisional
Probab=99.10 E-value=3.7e-09 Score=108.48 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p 440 (579)
.+++.++++++.|++.|+++++|+.+........++++. .| ...+.|+..+. +++++++++.|+.+++||
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~----lg----~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP 250 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDE----LG----AERIGHGVRAIEDPALMARLADRRIPLEVCP 250 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHH----cC----CcccchhhhhccCHHHHHHHHHcCCeEEECC
Confidence 467889999999999999999999743222222222221 22 23689999985 567999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.++...+ .... -...|++.++++|+++++|||.+.. ..+++.+++.+... .+++++++
T Consensus 251 ~Sn~~l~--------~~~~-~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l~~e~~~~~~~------------~~l~~~el 309 (340)
T PRK09358 251 TSNVQTG--------AVPS-LAEHPLKTLLDAGVRVTINTDDPLVFGTTLTEEYEALAEA------------FGLSDEDL 309 (340)
T ss_pred Ccccccc--------ccCC-cccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHH------------hCCCHHHH
Confidence 9986322 1000 1346899999999999999998743 46888888877653 35999995
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
..++.|+.++-.++
T Consensus 310 -~~l~~nai~~sf~~ 323 (340)
T PRK09358 310 -AQLARNALEAAFLS 323 (340)
T ss_pred -HHHHHHHHHHHCCC
Confidence 55568988876664
No 119
>PLN02599 dihydroorotase
Probab=99.04 E-value=3.7e-08 Score=100.65 Aligned_cols=169 Identities=14% Similarity=0.168 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchH--------HHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCCc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDR--------ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQGI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~i 434 (579)
+.+.+.++++.+.+.|+++.+|+.... +...+.+.+...... ..+.+.++.|...-.. +.+++.++.++
T Consensus 134 d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~--~~g~kI~i~HiSt~~~ve~v~~ak~~~v 211 (364)
T PLN02599 134 DLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQK--LPQLKIVMEHITTMDAVEFVESCGDGNV 211 (364)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHh--ccCCeEEEEecChHHHHHHHHhccCCCE
Confidence 467899999999999999999997421 111111222212222 2466888999855332 22222232268
Q ss_pred EEEecccccccchhHHH--------HhhChhhhhhhhhhHHHHHHCCCe-eeecCCCCCCCCCH---------HHHHHHH
Q 008063 435 VASMQPQHLLDDADSAR--------KKLGVDRAERESYLFQSLLANNAL-LALGSDWPVADINP---------LCAIRTA 496 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~--------~~l~~~~~~~~~~~l~~l~~~Gi~-v~~gsD~~~~~~~~---------~~~~~~~ 496 (579)
.+.+||++...+.+.+. ...++.|..+....+.+.+..|.. ..+|||.+...... .+....+
T Consensus 212 tae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~~~ 291 (364)
T PLN02599 212 AATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIYSAPVA 291 (364)
T ss_pred EEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCCCCCCCcccHHHH
Confidence 99999999887665542 234566665777788888999995 89999976432111 1111111
Q ss_pred HcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccc
Q 008063 497 MKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSL 540 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I 540 (579)
+.... ....+.+ ++++++++++.|||+++|++.++|+|
T Consensus 292 l~~l~-----~~~~~~g-~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 292 LSLYA-----KAFEEAG-ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HHHHH-----HHHHhcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 11000 0001234 89999999999999999996456663
No 120
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=98.60 E-value=5.5e-06 Score=83.42 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh--hhHHHHhhCCcEEEecc
Q 008063 364 ELESLLSMTMASDKSG-LQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQP 440 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g-~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~--~~~~~~~~~~i~~~~~p 440 (579)
+...+...++.|++.| +++.+|+.+......+.+++... ...+.|+..+.+ +.++++++.++.+.+||
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~---------~~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP 221 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLL---------PDRIGHGIFLLKHPELIYLVKLRNIPIEVCP 221 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhc---------cceeeceEecCCCHHHHHHHHHcCCEEEECc
Confidence 4677889999999999 99999997543333333333211 558999998877 99999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.+|...+ .... -...|++.++++|++++++||.+.. ..+...+++.+... .+++.++.
T Consensus 222 ~SN~~~~--------~~~~-~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~~~~~~~------------~~l~~~~l 280 (305)
T cd00443 222 TSNVVLG--------TVQS-YEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEYSLAAKT------------FGLTFEDL 280 (305)
T ss_pred chhhhhc--------CCCC-hhhChHHHHHHCCCeEEEeCCCCcccCCChHHHHHHHHHH------------cCcCHHHH
Confidence 9986322 1111 2245799999999999999998754 35777777766542 34899997
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
.+++ .|+-++-.++
T Consensus 281 ~~l~-~nsi~~sf~~ 294 (305)
T cd00443 281 CELN-RNSVLSSFAK 294 (305)
T ss_pred HHHH-HHHHHHhcCC
Confidence 7766 5776665553
No 121
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.51 E-value=1.2e-05 Score=78.91 Aligned_cols=134 Identities=18% Similarity=0.125 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+.++.|++.|+++.+|+.+.. ...++.+++ .+ .....+.|+...+.+.+..+.+.|+.+++......
T Consensus 107 ~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l~~----~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~ 178 (252)
T TIGR00010 107 EEVFRAQLQLAEELNLPVIIHARDAE--EDVLDILRE----EK--PKVGGVLHCFTGDAELAKKLLDLGFYISISGIVTF 178 (252)
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCcc--HHHHHHHHh----cC--CCCCEEEEccCCCHHHHHHHHHCCCeEeeceeEec
Confidence 36788889999999999999996432 333444433 22 23567789887777888888888999988865432
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCC-------C---HHHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADI-------N---PLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
... ..++.+.+.. =++.++||.+...+ + ....+...+. ...
T Consensus 179 ~~~----------------~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a-----------~~~ 231 (252)
T TIGR00010 179 KNA----------------KSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIA-----------EIK 231 (252)
T ss_pred CCc----------------HHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHH-----------HHh
Confidence 111 1233444433 26999999875321 1 1111111111 123
Q ss_pred CCCHHHHHHHHcHHHHHhccc
Q 008063 513 RISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl 533 (579)
|++++++.++++.||++++++
T Consensus 232 g~~~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 232 GMDVEELAQITTKNAKRLFGL 252 (252)
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 699999999999999999975
No 122
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.50 E-value=2e-05 Score=77.16 Aligned_cols=133 Identities=19% Similarity=0.168 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.++..++.|.+.++++.+|+... ...+++.++ .++ .....+.|+...+.+.++++.+.|+.+++.+....
T Consensus 107 ~~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~~----~~~--~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~ 178 (251)
T cd01310 107 KEVFRAQLELAKELNLPVVIHSRDA--HEDVLEILK----EYG--PPKRGVFHCFSGSAEEAKELLDLGFYISISGIVTF 178 (251)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHH----hcC--CCCCEEEEccCCCHHHHHHHHHcCCEEEeeeeecc
Confidence 4568999999999999999998643 233333333 333 23567778876667788888889999988876432
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCCCH----------HHHHHHHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADINP----------LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
... ..++.+.+.+ -++.++||.|...... +..+...+. ...
T Consensus 179 ~~~----------------~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la-----------~~~ 231 (251)
T cd01310 179 KNA----------------NELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIA-----------ELK 231 (251)
T ss_pred CCC----------------HHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHH-----------HHH
Confidence 110 0123333333 2699999987653211 111222221 124
Q ss_pred CCCHHHHHHHHcHHHHHhcc
Q 008063 513 RISLTDALIAHTLSAARACF 532 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lg 532 (579)
+++.+++.+..+.||+++||
T Consensus 232 gl~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 232 GISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred CcCHHHHHHHHHHHHHHHhC
Confidence 69999999999999999986
No 123
>PTZ00124 adenosine deaminase; Provisional
Probab=98.48 E-value=1.1e-05 Score=82.59 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEeccc
Q 008063 367 SLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 367 ~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~ 441 (579)
....+++.|++.|+++.+|+-+. .......+++... + ...|.|+..+ +++.++++++.++.+.+||.
T Consensus 207 ~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l----~----~~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPt 278 (362)
T PTZ00124 207 PFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVL----K----VKRIGHGIRVAESQELIDMVKEKDILLEVCPI 278 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHh----C----CCccccccccCCCHHHHHHHHHcCCeEEECCc
Confidence 46788999999999999999742 2222333333222 2 5589999887 57899999999999999999
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDAL 520 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al 520 (579)
+|..... -.. -...|++.++++|++++++||.+.. ..++..++..+.. ..|++.++..
T Consensus 279 SN~~~~~--------v~~-~~~HPi~~l~~~Gv~v~InTDDp~~~~t~l~~Ey~~~~~------------~~gls~~~l~ 337 (362)
T PTZ00124 279 SNVLLNN--------AKS-MDTHPIRKLYDAGVKVSVNSDDPGMFLTNINDDYEELYT------------HLNFTLADFM 337 (362)
T ss_pred chhhhhc--------CCc-hhhHHHHHHHHCCCcEEEeCCCccccCCChhHHHHHHHH------------HcCCCHHHHH
Confidence 9973221 111 2346899999999999999997744 3455566554443 3469999988
Q ss_pred HHHcHHHHHhcccC
Q 008063 521 IAHTLSAARACFLE 534 (579)
Q Consensus 521 ~~~T~npA~~lgl~ 534 (579)
+++ .|+.+.-.++
T Consensus 338 ~l~-~nai~asF~~ 350 (362)
T PTZ00124 338 KMN-EWALEKSFLD 350 (362)
T ss_pred HHH-HHHHHHhcCC
Confidence 775 5776665544
No 124
>PRK10812 putative DNAse; Provisional
Probab=98.33 E-value=4.4e-05 Score=74.98 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+++.+++|++.++|+.+|+.... ...++.+++. +... .-.+.|+...+.+.++++.+.|..+++......
T Consensus 110 ~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~----~~~~-~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~ 182 (265)
T PRK10812 110 QESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREE----KVTD-CGGVLHCFTEDRETAGKLLDLGFYISFSGIVTF 182 (265)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhh----cCCC-CCEEEEeecCCHHHHHHHHHCCCEEEECeeeec
Confidence 35678889999999999999996432 3455544432 1111 235789999899999999999998888754322
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCC--CeeeecCCCCCCCCCH-------HHHHH---HHHcccCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANN--ALLALGSDWPVADINP-------LCAIR---TAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~G--i~v~~gsD~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~ 512 (579)
+....++.+.+.. =++.+.||+|...+.+ ...+. ..+. .-.
T Consensus 183 ----------------~~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia-----------~l~ 235 (265)
T PRK10812 183 ----------------RNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMA-----------VLK 235 (265)
T ss_pred ----------------CccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHH-----------HHh
Confidence 1111344555544 2689999988653211 11121 1222 124
Q ss_pred CCCHHHHHHHHcHHHHHhcccCC
Q 008063 513 RISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.+++.+..+.|+.++++++.
T Consensus 236 g~~~eei~~~~~~N~~~lf~~~~ 258 (265)
T PRK10812 236 GVSVEELAQVTTDNFARLFHIDA 258 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCh
Confidence 69999999999999999999853
No 125
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=98.27 E-value=0.00011 Score=74.91 Aligned_cols=143 Identities=15% Similarity=0.041 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHCC--CeEEEEecchH-----HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCc
Q 008063 364 ELESLLSMTMASDKSG--LQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGI 434 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g--~~i~iH~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i 434 (579)
+.......++.|++.| +++++|+-+.. ....+.+++ . .+ ...|.|+..+. ++.++.+++.+|
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~----lg----~~RIGHG~~~~~dp~ll~~l~~~~I 247 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-L----LN----TKRIGHGFALPKHPLLMDLVKKKNI 247 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-H----hC----CCcCccccccCcCHHHHHHHHHcCC
Confidence 4677888999999999 99999996432 122333333 1 12 55889998765 789999999999
Q ss_pred EEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C-CHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 435 VASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I-NPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 435 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
.+.+||.+|...+- .+ . -...|++.++++|++++++||.+... . +.-.+.+.+.... ...
T Consensus 248 ~lEvCPtSN~~~~~-----v~---~-~~~HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~---------g~~ 309 (345)
T cd01321 248 AIEVCPISNQVLGL-----VS---D-LRNHPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGL---------APA 309 (345)
T ss_pred eEEECcchhhhhcc-----cc---c-hhhChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHh---------ccC
Confidence 99999999973221 11 1 23468999999999999999987442 4 5555555554311 111
Q ss_pred CCCHHHHHHHHcHHHHHhcccC
Q 008063 513 RISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~ 534 (579)
+++.++..+++ .|+.++-.++
T Consensus 310 ~l~~~~l~~l~-~nsi~~sF~~ 330 (345)
T cd01321 310 DAGLRGLKQLA-ENSIRYSALS 330 (345)
T ss_pred CCCHHHHHHHH-HHHHHHHCCC
Confidence 38999966654 6887776654
No 126
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.16 E-value=8.7e-05 Score=74.56 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecch-HHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhhHHHHhhCCcEEEeccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGD-RANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
..+.+++.+++|++.|+|+.+|+... ......++.+.+ .+....+..+.||. ..+.+.++++.+.|..+.++..
T Consensus 134 q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~----~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~ 209 (293)
T cd00530 134 EEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEE----EGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGI 209 (293)
T ss_pred HHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHH----cCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCC
Confidence 34578899999999999999998642 233444444433 34333456899998 5677889999999988887744
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCC--------HHHHHHHHHcccCCCCCCCCCCC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADIN--------PLCAIRTAMKRIPPGWDNAWIPS 511 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
...... ...+.. +....++.+.+.|. ++.++||++...+. +..-+...... ...
T Consensus 210 ~~~~~~----~~~~~~---~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 273 (293)
T cd00530 210 GKDKIF----GYPSDE---TRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPR---------LRE 273 (293)
T ss_pred Cccccc----CCCCHH---HHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHHHHHH---------HHH
Confidence 321000 000000 22335678888886 78999998764321 11112222111 134
Q ss_pred CCCCHHHHHHHHcHHHHHhc
Q 008063 512 ERISLTDALIAHTLSAARAC 531 (579)
Q Consensus 512 ~~ls~~~al~~~T~npA~~l 531 (579)
.+++.+++.++.+.||++++
T Consensus 274 ~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 274 RGVTEEQLDTILVENPARFL 293 (293)
T ss_pred cCCCHHHHHHHHHHCHHHhC
Confidence 57999999999999999875
No 127
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=98.10 E-value=0.00032 Score=68.73 Aligned_cols=137 Identities=14% Similarity=0.024 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.+.+-++.|.+++.|+.+|+.+. .+.+++.+.+ ++. .+..+.|+...+.+.++++.+.|..++..+....
T Consensus 113 ~~vf~~ql~lA~~~~~Pv~iH~r~a--~~~~~~il~~----~~~--~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~ 184 (258)
T PRK11449 113 QWLLDEQLKLAKRYDLPVILHSRRT--HDKLAMHLKR----HDL--PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITY 184 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCc--cHHHHHHHHh----cCC--CCCeEEEcCCCCHHHHHHHHHCCCEEEeCccccc
Confidence 3567889999999999999999742 2444444433 221 1246999999999999999999999888766543
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCCH-------HHHHHHHHcccCCCCCCCCCCCCCCC
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADINP-------LCAIRTAMKRIPPGWDNAWIPSERIS 515 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ls 515 (579)
.... .++.+.+. .. ++.+.||+|..++.+ ...+...+... ..-.+++
T Consensus 185 ~~~~----------------~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~i--------a~l~~~~ 240 (258)
T PRK11449 185 PRAS----------------KTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVL--------CELRPEP 240 (258)
T ss_pred cCcH----------------HHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHH--------HHHHCcC
Confidence 2111 12233321 22 589999998754321 11111111110 0123589
Q ss_pred HHHHHHHHcHHHHHhccc
Q 008063 516 LTDALIAHTLSAARACFL 533 (579)
Q Consensus 516 ~~~al~~~T~npA~~lgl 533 (579)
++++.+..+.|..+++|+
T Consensus 241 ~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 241 ADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999999998874
No 128
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=98.02 E-value=0.00011 Score=75.14 Aligned_cols=237 Identities=16% Similarity=0.078 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEeCCc----CCCC--CccccchHHHHHHHHHHhhcCCCeeEEEEccCcc-ch---h
Q 008063 241 SVDERREALLRASNLALSRGVTTVVDFGR----YYPG--ESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLE-TW---S 310 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~Git~v~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~-~~---~ 310 (579)
+++..+.......+.+.+.|+.-+--... ...+ .+.........+.++.....-.+.+++.....-. .. .
T Consensus 72 ~~e~~~~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~~~~i~~~li~~~~R~~~~~~~~ 151 (331)
T PF00962_consen 72 TPEDLRRYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEKEFGIKVRLIISVLRHFPDEWAE 151 (331)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEETTSTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccccccccccccccccccchHHHHH
Confidence 66888888888899999999877643211 0011 2222334444444555444444555555433222 11 1
Q ss_pred hHHHHHHhcCCCCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH
Q 008063 311 SLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR 390 (579)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~ 390 (579)
+..+...... .. ...|+.+.-+. .. ..+.....+++.+++.|+++.+|+-+..
T Consensus 152 ~~~~~~~~~~---~~--~vvG~dl~g~E------------~~----------~~~~~~~~~~~~a~~~gl~~t~HaGE~~ 204 (331)
T PF00962_consen 152 EIVELASKYP---DK--GVVGFDLAGDE------------DG----------GPPLKFAPAFRKAREAGLKLTVHAGETG 204 (331)
T ss_dssp HHHHHHHHTT---TT--TEEEEEEESST------------TS----------TTGGGHHHHHHHHHHTT-EEEEEESSSS
T ss_pred HHHHHHhhcc---cc--eEEEEEecCCc------------cc----------CchHHHHHHHhhhcccceeecceecccC
Confidence 2222222211 11 23344333111 01 1223377889999999999999997555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHH
Q 008063 391 ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQS 468 (579)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 468 (579)
......+++.. .+ ...|.|+..+. ++.++++++.+|.+.+||.+|... +.-.. -...|++.
T Consensus 205 ~~~~~~~ai~~----l~----~~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~--------~~~~~-~~~hP~~~ 267 (331)
T PF00962_consen 205 GPEHIRDAILL----LG----ADRIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQL--------GAVPS-YEEHPLRK 267 (331)
T ss_dssp THHHHHHHHHT----ST-----SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHT--------TSSST-GGG-CHHH
T ss_pred Ccccccchhhh----cc----ceeecchhhhhhhhHHHHHHHHhCCCeeeCCCcCccc--------ceeee-cchhHHHH
Confidence 44444444432 12 45999998764 567889999999999999998632 21111 23568999
Q ss_pred HHHCCCeeeecCCCCCC-CCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 469 LLANNALLALGSDWPVA-DINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 469 l~~~Gi~v~~gsD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
++++|++|+++||.+.. ..+.-.+...+... .+++.++..+++ .|+.++-.++
T Consensus 268 ~~~~gv~v~i~TDd~~~~~~~l~~ey~~~~~~------------~~l~~~~l~~l~-~nsi~~sf~~ 321 (331)
T PF00962_consen 268 LLDAGVPVSINTDDPGVFGTTLSDEYYLAAEA------------FGLSLADLKQLA-RNSIEASFLS 321 (331)
T ss_dssp HHHTT-EEEE--BSHHHHT-SHHHHHHHHHHH------------HT--HHHHHHHH-HHHHHCSSS-
T ss_pred HHHcCCceeccCCCccccCCCcHHHHHHHHHH------------cCCCHHHHHHHH-HHHHHHHcCC
Confidence 99999999999997633 34555665555432 258998866665 6888776654
No 129
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=98.00 E-value=7.7e-05 Score=74.84 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p 440 (579)
..++....+++.+++.|+.+.+||.+....+.+.+++.... ...|.|+... +++...+++..+|.+.+||
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~--------~~rI~HGi~~~~d~~L~~~l~~~qI~levCP 253 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLG--------AERIGHGIRAIEDPELLYRLAERQIPLEVCP 253 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhc--------hhhhccccccccCHHHHHHHHHhCCeeEECC
Confidence 46788999999999999999999984444444444443322 1257777654 5678889999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCC-CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADI-NPLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
.+|.... .-.. -...|+++++++|++++++||.+.... ....+...+.. ..+++..|+
T Consensus 254 ~SNi~~~--------~v~~-~~~hPf~~~~d~Gv~VsLnTDdp~~f~~~l~~Ey~~aa~------------~~~l~~~dl 312 (345)
T COG1816 254 LSNIQLG--------VVPS-LAKHPFKKLFDAGVKVSLNTDDPLYFGTPLIEEYLVAAQ------------IYGLSREDL 312 (345)
T ss_pred cchhhcc--------cccc-hhhCcHHHHHHcCCceEEcCCChhhcCCchHHHHHHHHH------------HhCCCHHHH
Confidence 9996222 1111 334579999999999999999875543 55556555553 345888886
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
.+++ .|.=+.-+++
T Consensus 313 ~~~a-rnav~~af~~ 326 (345)
T COG1816 313 CELA-RNAVEAAFIS 326 (345)
T ss_pred HHHH-HHHHHHccCC
Confidence 6554 6776666664
No 130
>PRK10425 DNase TatD; Provisional
Probab=97.98 E-value=0.0011 Score=64.80 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+++-++.|+++++|+.+|+.+.. +.+++.+++.. ....-.+.|+...+.+.++++.+.|..+++.+.....
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~-----~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~ 180 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWL-----DKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDE 180 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhc-----cCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeecc
Confidence 5578889999999999999997432 55555554421 1112367899999999999999999998887654321
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCH-----------HHHHHHHHcccCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINP-----------LCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
. ....++.+.+ -.. ++.+-||+|...+.+ ...+...+... ..-.
T Consensus 181 ~---------------~~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~i--------A~l~ 237 (258)
T PRK10425 181 R---------------RGLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRI--------AHWR 237 (258)
T ss_pred c---------------ccHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHH--------HHHH
Confidence 0 0001122222 111 478899988653211 11111111111 1234
Q ss_pred CCCHHHHHHHHcHHHHHhccc
Q 008063 513 RISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl 533 (579)
+++.+++.+..+.|.-+++|+
T Consensus 238 ~~~~~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 238 GEDAAWLAATTDANARTLFGL 258 (258)
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 689999999999998888764
No 131
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00057 Score=66.16 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+++-+++|++.+.|+.+|+.+. -+.+++.+++... ..-.+.||...+.+.++++.+.|..+++.+.....
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A--~~d~~~iL~~~~~------~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk 183 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDA--HEDTLEILKEEGA------PVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFK 183 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccc--HHHHHHHHHhcCC------CCCEEEEccCCCHHHHHHHHHcCeEEEECceeecC
Confidence 457888999999999999999642 2444444444321 35589999999999999999999988888776653
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHHC-CC-eeeecCCCCCCCCCHHHH-------HHHHHcccCCCCCCCCCCCCCCCH
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLAN-NA-LLALGSDWPVADINPLCA-------IRTAMKRIPPGWDNAWIPSERISL 516 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~~-Gi-~v~~gsD~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ls~ 516 (579)
.... ++++.+. -. ++.+=||+|...+.++.. +...+... ..-.++++
T Consensus 184 ~a~~----------------~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~i--------Aelk~~~~ 239 (256)
T COG0084 184 NAEK----------------LREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKL--------AELKGISA 239 (256)
T ss_pred CcHH----------------HHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHH--------HHHhCCCH
Confidence 2211 1111111 11 377889998775433221 11111111 12346999
Q ss_pred HHHHHHHcHHHHHhccc
Q 008063 517 TDALIAHTLSAARACFL 533 (579)
Q Consensus 517 ~~al~~~T~npA~~lgl 533 (579)
+++.+..|.|.-+++++
T Consensus 240 eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 240 EEVAEITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999888764
No 132
>PRK09875 putative hydrolase; Provisional
Probab=97.76 E-value=0.0011 Score=65.83 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccC-CChhhHHHHhhCCcEEEecccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQH-LASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~-~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
....+++..+++++.|.++.+|........+.++. ..+.|....+..+.|+.. .+.+...++.+.|+.+..+.-.
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~i----l~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g 212 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLAL----LQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIG 212 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHH----HHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCC
Confidence 34567888888999999999997532222233443 344566677999999964 3557888899999999876221
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCC-C-eeeecCCCCCCCC-------CHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANN-A-LLALGSDWPVADI-------NPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G-i-~v~~gsD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
... .++.+ +....++.+.+.| . ++.+++|....+. ..-..+...+.++ .+.|
T Consensus 213 ~~~-------~~pd~---~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L---------~~~G 273 (292)
T PRK09875 213 KNS-------YYPDE---KRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQL---------RQSG 273 (292)
T ss_pred Ccc-------cCCHH---HHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHH---------HHcC
Confidence 110 01111 3345688899998 3 7999999653321 1123333333332 3457
Q ss_pred CCHHHHHHHHcHHHHHhcc
Q 008063 514 ISLTDALIAHTLSAARACF 532 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg 532 (579)
++.+++=++.-.||+++|+
T Consensus 274 vse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 274 FSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred CCHHHHHHHHHHCHHHHhC
Confidence 9999999999999999874
No 133
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=97.65 E-value=0.0078 Score=64.05 Aligned_cols=143 Identities=18% Similarity=0.147 Sum_probs=90.6
Q ss_pred HHHHHHHHH-HHHHCCCeEEEEecchH-----HHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEE
Q 008063 365 LESLLSMTM-ASDKSGLQVAIHAIGDR-----ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVA 436 (579)
Q Consensus 365 ~~~l~~~~~-~a~~~g~~i~iH~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~ 436 (579)
...+...+. .+++.|+++.+|+-+.. ....+.+++ . .+ .-.|.|+..+. ++.++.+++.+|.+
T Consensus 305 l~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-l----Lg----~~RIGHG~~l~~~P~l~~~vke~~I~l 375 (479)
T TIGR01431 305 LLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-L----LN----TTRIGHGFALVKHPLVLQMLKERNIAV 375 (479)
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-H----cC----CccccCcccccCCHHHHHHHHHhCCeE
Confidence 444444444 55569999999996331 123344433 1 12 55889998765 78999999999999
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
.+||.+|.... .... -...|++.|+++|++++++||.|... ..+-.+.+.+..... ...+
T Consensus 376 EvCP~SN~~l~--------~v~~-~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef~~a~~~~~---------~~~~ 437 (479)
T TIGR01431 376 EVNPISNQVLQ--------LVAD-LRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDFYIAFMGLA---------SAKA 437 (479)
T ss_pred EECccchhhhc--------ccCC-cccChHHHHHHCCCcEEEeCCCccccCCCCchHHHHHHHHHhc---------ccCC
Confidence 99999986322 1111 23468999999999999999987542 234445444443211 1114
Q ss_pred CHHHHHHHHcHHHHHhcccCC
Q 008063 515 SLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~~ 535 (579)
++.+ |.....|..++-.+++
T Consensus 438 ~l~~-L~~la~NSi~~Sfl~~ 457 (479)
T TIGR01431 438 DLRT-LKQLALNSIKYSALSE 457 (479)
T ss_pred CHHH-HHHHHHHHHHHHCCCH
Confidence 5655 4444467777666553
No 134
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.62 E-value=0.0065 Score=56.01 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCC--cEEEec
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQG--IVASMQ 439 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~--i~~~~~ 439 (579)
.+.+++-+++|++.++|+.+|.... .....+++... ..++......+.|+ +.+.++.+-+.+ +.+.++
T Consensus 113 ~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~----~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvq 185 (254)
T COG1099 113 KEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILI----ESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQ 185 (254)
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHH----HcCCChhheehhcc---cHHHHHHHHhccceEEEEec
Confidence 4457888999999999999998632 23344444333 34455556667775 566777665555 455667
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHHCC-CeeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLANN-ALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~G-i~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
|.- +.+++ ......+.| -++.+.||..+...++..--+.++.. ...|+..++
T Consensus 186 PgK-----------lt~~e------AveIV~ey~~~r~ilnSD~~s~~sd~lavprtal~m----------~~~gv~~~~ 238 (254)
T COG1099 186 PGK-----------LTVEE------AVEIVREYGAERIILNSDAGSAASDPLAVPRTALEM----------EERGVGEEE 238 (254)
T ss_pred CCc-----------CCHHH------HHHHHHHhCcceEEEecccccccccchhhhHHHHHH----------HHhcCCHHH
Confidence 742 22222 245556667 57999999877766666555554432 335689999
Q ss_pred HHHHHcHHHHHhcccC
Q 008063 519 ALIAHTLSAARACFLE 534 (579)
Q Consensus 519 al~~~T~npA~~lgl~ 534 (579)
.-+.+-.|+-+++|++
T Consensus 239 i~kV~~~NA~~~~~l~ 254 (254)
T COG1099 239 IEKVVRENALSFYGLS 254 (254)
T ss_pred HHHHHHHHHHHHhCcC
Confidence 8888888888888763
No 135
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.54 E-value=0.01 Score=58.22 Aligned_cols=133 Identities=19% Similarity=0.129 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccccc
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLD 445 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 445 (579)
+.+.+.+++|++++.|+.+|+.+ +...+++.+++.... ..-.+.|+...+.+.++.+.+.|..++..+.....
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~--a~~~~l~il~~~~~~-----~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~ 183 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRK--AHEELLEILKEYGPP-----NLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFK 183 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEES--HHHHHHHHHHHTTGG-----TSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGST
T ss_pred HHHHHHHHHHHHhCCcEEEecCC--cHHHHHHHHHhcccc-----ceeEEEecCCCCHHHHHHHHhcCceEEeccccccc
Confidence 45788899999999999999976 345666666554311 12579999999999999999999999998876542
Q ss_pred chhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCC----------CHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 446 DADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADI----------NPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
..+ ..+.+.+ -.. ++.+-||+|...+ ......-..+.+ -.+
T Consensus 184 ~~~----------------~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~-----------~~~ 236 (255)
T PF01026_consen 184 NSK----------------KVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAE-----------IKG 236 (255)
T ss_dssp TSH----------------HHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHH-----------HHT
T ss_pred ccH----------------HHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHH-----------HcC
Confidence 211 1122222 222 5899999875422 112222222221 124
Q ss_pred CCHHHHHHHHcHHHHHhcc
Q 008063 514 ISLTDALIAHTLSAARACF 532 (579)
Q Consensus 514 ls~~~al~~~T~npA~~lg 532 (579)
++++++.+....|..+++|
T Consensus 237 ~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 237 ISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp STHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8999999999999998875
No 136
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.0036 Score=63.19 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchH-HHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh--HHHHhhCCcEEEeccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDR-ANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT--AARFGDQGIVASMQPQ 441 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~--~~~~~~~~i~~~~~p~ 441 (579)
.......+..+.+.|+.+.+||-+.. .....-+.+. . . ...+|.|+..+.++. +.+++..++.+.+||.
T Consensus 226 ~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~~LD-~---l----~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~ 297 (399)
T KOG1097|consen 226 LSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKNALD-L---L----GTERIGHGYFLTKDPELINLLKSRNIALEICPI 297 (399)
T ss_pred hhhhHHHHHhhhhcCCcEEEEccccCCChHHHHHHHH-h---h----CCccccCceeccCCHHHHHHHHhcCceEEEccc
Confidence 34556666667779999999997442 2222222222 1 1 155899999887655 9999999999999999
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCC--HHHHHHHHHcccCCCCCCCCCCCCCCCHHHH
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADIN--PLCAIRTAMKRIPPGWDNAWIPSERISLTDA 519 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a 519 (579)
+|.-.+ .... -...|++++.+.|++++++||.|..-.. .-...+.++.... . +++.++.
T Consensus 298 SN~vl~--------~v~d-~rnhp~~~~~~~~vP~vI~sDDP~~f~~~~Lt~dfy~A~~~~~---------~-~~~~~~l 358 (399)
T KOG1097|consen 298 SNQVLG--------LVSD-LRNHPVARLLAAGVPVVINSDDPGFFGAAPLTLDFYLAFLGIA---------P-NLDLREL 358 (399)
T ss_pred hhhhee--------cccc-ccccHHHHHHhCCCCEEEeCCCcccccCccccHHHHHHHHhcc---------c-cCCHHHH
Confidence 986322 2111 3456899999999999999997754322 1233333333221 1 4788887
Q ss_pred HHHHcHHHHHhcccC
Q 008063 520 LIAHTLSAARACFLE 534 (579)
Q Consensus 520 l~~~T~npA~~lgl~ 534 (579)
.+++ .|..+.--++
T Consensus 359 ~~la-~nai~~S~l~ 372 (399)
T KOG1097|consen 359 KRLA-LNAIKYSFLS 372 (399)
T ss_pred HHHH-HHHhhhccCC
Confidence 6665 6877776554
No 137
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.21 Score=48.56 Aligned_cols=192 Identities=13% Similarity=0.183 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEec-chHHHH------HHHH-HHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAI-GDRAND------LVLD-MYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~------~~~~-~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
+.+.+..+++...+.|+++.+|.. .+..++ ..++ .++....+. ...+..++|++.-+.-++-+-...++.
T Consensus 116 ~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~f--P~LKIV~EHiTT~dav~~v~~~~~nla 193 (344)
T COG0418 116 DIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRF--PKLKIVLEHITTKDAVEYVKDANNNLA 193 (344)
T ss_pred cHHHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHhhC--CcceEEEEEeccHHHHHHHHhcCccee
Confidence 467788899999999999999975 111111 2222 444444443 367889999876554444343344478
Q ss_pred EEecccccccchhHHH-Hh-------hCh-hhhhhhhhhHHHHHHCCC-eeeecCCCCCCCC-------------CHHHH
Q 008063 436 ASMQPQHLLDDADSAR-KK-------LGV-DRAERESYLFQSLLANNA-LLALGSDWPVADI-------------NPLCA 492 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~-~~-------l~~-~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~~-------------~~~~~ 492 (579)
..++|+|...+..... .. ++- .|. +....+..+.-.|- ++.+|||+..-.. +-..+
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~-~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsap~a 272 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRE-THREALREAATSGHPKFFLGTDSAPHARSRKESACGCAGIFSAPFA 272 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccch-hhHHHHHHHHhcCCCcEEecCCCCCCcccccccccccccccccHhH
Confidence 8889998775544332 11 010 111 44445666665555 7999999653221 11111
Q ss_pred HHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhcc-CCeEEEEE
Q 008063 493 IRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEV-SASIEATY 571 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~-~~~v~~v~ 571 (579)
+..... ++-+.+.+..-| .-++.|+.+++|++ ..-+.+.+...+|..++.+. .....-.+
T Consensus 273 l~~~Ae--------vFE~~naL~~Le--aF~S~nGp~fY~lp---------~n~~~itL~k~~~~vP~~i~~g~~~vvpf 333 (344)
T COG0418 273 LPLYAE--------VFEEENALDNLE--AFASDNGPKFYGLP---------RNDKTITLVKEEWQVPESIPFGDDIVVPF 333 (344)
T ss_pred HHHHHH--------HHHHhcHHHHHH--HHHhhcCcceeccc---------CCCceEEEEeccccccceeccCCCceEEe
Confidence 111110 011222233333 35677899999986 34455677777776444433 23445566
Q ss_pred ECCEEe
Q 008063 572 VSGVQA 577 (579)
Q Consensus 572 v~G~~v 577 (579)
..|+.+
T Consensus 334 ~aGe~L 339 (344)
T COG0418 334 RAGETL 339 (344)
T ss_pred cCCCee
Confidence 666543
No 138
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=96.99 E-value=0.2 Score=49.28 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC----------hhhHHHHhhCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA----------SGTAARFGDQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~----------~~~~~~~~~~~ 433 (579)
+.+.+.++++.+.++|+++.+|+. .... ..+....... +.+..+.|+.... .+.++.++..+
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~-~~~l----~~l~~l~~~~---~l~ivldH~G~p~~~~~~~~~~~~~~l~~l~~pN 179 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFD-AVDL----PALLPFLQKL---PVAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGN 179 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeC-HhhH----HHHHHHHHHC---CCCEEEECCCCCCCCCCCCCHhHHHHHHHHhcCC
Confidence 456788999999999999999984 2222 2233333333 5688999987543 12233332235
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVAD 486 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~ 486 (579)
+.+.++-........ .... ....-++.+.+.|. ++++|||+|...
T Consensus 180 V~~k~Sg~~~~~~~~-----~~~~---~~~~~~~~~~~~g~dRlmfGSD~P~~~ 225 (263)
T cd01311 180 VWVKVSGPYRLSVKQ-----EAYA---DVIAFARQIVAAAPDRLVWGTDWPHPR 225 (263)
T ss_pred EEEEecchhhcCCCC-----CCHH---HHHHHHHHHHHhCCCcEEEeCCCCCCC
Confidence 555444321110000 0000 11223345555666 799999998753
No 139
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.97 E-value=0.016 Score=57.98 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccc-h---------hhHHH
Q 008063 245 RREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET-W---------SSLAD 314 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~-~---------~~~~~ 314 (579)
..+.....++.+.+.|..+++|.... ..+.++ ..++.+.++..+.+-....+.... + ++..+
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~----g~GRd~----~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~ 107 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPI----GLGRDV----EALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SG----GGTB-H----HHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCc----ccCcCH----HHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHH
Confidence 45566667788899999999998643 222233 455555555555555544222111 1 12222
Q ss_pred HHH-hcCC-CCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEecchH-H
Q 008063 315 LIN-KTGH-VLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDR-A 391 (579)
Q Consensus 315 ~~~-~~~~-~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~g~~-~ 391 (579)
... +... ....-++.+-+|...+. .+ +...+...+++..+++++.|+++.+|+.... .
T Consensus 108 ~~i~Ei~~GidgT~ikaG~Ik~~~~~----------~~---------it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~ 168 (308)
T PF02126_consen 108 LFIREIEEGIDGTGIKAGIIKEIGSS----------NP---------ITPLEEKVLRAAARAHKETGAPISTHTGRGTRM 168 (308)
T ss_dssp HHHHHHHT-STTSSB-ESEEEEEEBT----------TB---------CEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTC
T ss_pred HHHHHHHhcCCCCccchhheeEeecc----------CC---------CCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcC
Confidence 221 1111 12234555555554322 01 1112345678888888999999999997443 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEeeccCCCh-hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHH
Q 008063 392 NDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLL 470 (579)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~-~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 470 (579)
..+.++.+++ .|....+..+.|+-...+ +....+.+.|+.+...---....+.......+....++....+..|.
T Consensus 169 ~~e~~~il~e----~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~ 244 (308)
T PF02126_consen 169 GLEQLDILEE----EGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELI 244 (308)
T ss_dssp HHHHHHHHHH----TT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHH
Confidence 4555555544 466666999999985443 56678888999887743310000000000000000114456788999
Q ss_pred HCCC--eeeecCCCCC---C-CCCHH-----HHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhc
Q 008063 471 ANNA--LLALGSDWPV---A-DINPL-----CAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARAC 531 (579)
Q Consensus 471 ~~Gi--~v~~gsD~~~---~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~l 531 (579)
+.|. .+.++.|... . ..... .-+...+.++ .+.|++.+++=++...||+++|
T Consensus 245 ~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L---------~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 245 EEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRL---------KERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp HTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHH---------HHTTS-HHHHHHHHTHHHHHHH
T ss_pred HcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHH---------HHcCCCHHHHHHHHHHCHHHHc
Confidence 9998 7999999543 1 11111 0111112211 2457999999999999999986
No 140
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=95.86 E-value=0.74 Score=45.07 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeecc-CCChhh-HHHHhhCCcEEEeccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ-HLASGT-AARFGDQGIVASMQPQ 441 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~-~~~~~~-~~~~~~~~i~~~~~p~ 441 (579)
+...+++..++.++.|.|+.+|..+..-..+.++.+ ...|....+..+.|+. ..++-. .+.++..|+.+...--
T Consensus 150 Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il----~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~i 225 (316)
T COG1735 150 EEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRIL----AEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRI 225 (316)
T ss_pred HHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHH----HHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEeccc
Confidence 345678888888999999999997443223333333 3345666699999998 444433 3456666887765432
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCC--eeeecCCCCCCCCCHH-HHHHHHHcccCCCCCCCC------CCCC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNA--LLALGSDWPVADINPL-CAIRTAMKRIPPGWDNAW------IPSE 512 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi--~v~~gsD~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~ 512 (579)
-.. .+++.+ ....++.++.+.|. .+.++-|.+....+.+ ..+..+..+. ++...+ ....
T Consensus 226 G~d-------~y~pd~---~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~~~~~~~~~~--g~~~I~~~fIP~Lk~~ 293 (316)
T COG1735 226 GKD-------KYYPDE---DRIAPLLELVARGYADLILLSHDDICLSDDVFLKSMLKANGGW--GYGYILNDFIPRLKRH 293 (316)
T ss_pred Ccc-------ccCcHH---HhhhhHHHHHHhhHhhheecccchhhhhhhHHHHhhhhhcCCc--ccchhhHhhHHHHHHc
Confidence 211 111111 34557888888887 4666633322222222 2222211111 111111 2577
Q ss_pred CCCHHHHHHHHcHHHHHhccc
Q 008063 513 RISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl 533 (579)
|++.+++=.+.--||++++.-
T Consensus 294 Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 294 GVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred CCCHHHHHHHHhhCHHHHhcc
Confidence 899777777777899998864
No 141
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=94.93 E-value=0.27 Score=53.36 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHCCCe---EEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecc
Q 008063 366 ESLLSMTMASDKSGLQ---VAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQP 440 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~---i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p 440 (579)
.-+..+=..-++.|+. +..||.+.+..+.+.+++ + ....|.|+..+. +....++...+|.+.+||
T Consensus 422 aNl~~LN~~R~~rGLnt~~LrpHaGEag~~e~l~~A~--L--------~adRIgHGi~l~~dp~L~yl~~~~qI~LevCP 491 (611)
T TIGR01429 422 ANIMVLNNFRRERGLNTFLLRPHCGEAGSVDHLVSAF--L--------TSHGINHGILLRKVPVLQYLYYLTQIPIAMSP 491 (611)
T ss_pred HHHHHHHHHHHHcCCCccceeecCCCCCCHHHHHHHh--h--------cCcccccceecCCCHHHHHHHHHcCCeEEEcC
Confidence 3344443334456665 789997555555555544 1 144788988764 344455678999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCH
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISL 516 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 516 (579)
.++.. . ... -...|+..+++.|++++++||.+..- . .+.++...+.. ..+++.
T Consensus 492 tSN~~---l---~~~-----y~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~------------~~~Ls~ 548 (611)
T TIGR01429 492 LSNNS---L---FLE-----YSKNPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQ------------VWKLST 548 (611)
T ss_pred Ccchh---h---ccC-----hhhChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHH------------HhCCCH
Confidence 99851 1 111 23447999999999999999987442 1 24455444432 235899
Q ss_pred HHHHHHHcHHHHHhcccCC
Q 008063 517 TDALIAHTLSAARACFLEN 535 (579)
Q Consensus 517 ~~al~~~T~npA~~lgl~~ 535 (579)
.+..+++ .|+.+.-+.++
T Consensus 549 ~Dl~eLa-rNSV~~S~~~~ 566 (611)
T TIGR01429 549 CDMCELA-RNSVLQSGFEH 566 (611)
T ss_pred HHHHHHH-HHHHHHhCCCH
Confidence 8877765 78888887764
No 142
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=94.58 E-value=0.062 Score=44.09 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=31.0
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecChHH
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGNYSA 82 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~~~~ 82 (579)
...+++|+|+.|+|..|. .+.+|-|+||||+.||....
T Consensus 64 ~~lD~VItNa~IiD~~GI--~KADIGIkdG~I~gIGkAGN 101 (121)
T PF00449_consen 64 EALDLVITNALIIDYTGI--VKADIGIKDGRIVGIGKAGN 101 (121)
T ss_dssp CC-SEEEEEEEEEETTEE--EEEEEEEETTEEEEEE-EB-
T ss_pred ccccEEEeCcEEEecCCc--EEeeEEeeCCEEEEEeccCC
Confidence 378899999999999654 78899999999999997654
No 143
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=94.22 E-value=0.28 Score=52.14 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=81.1
Q ss_pred eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh--hhHHHHhhCCcEEEecccccccchhHHHHhhChhh
Q 008063 381 QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS--GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDR 458 (579)
Q Consensus 381 ~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~--~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~ 458 (579)
.+..||.+.+..+.+.+++ + + ...|.|+..+.+ ....++...+|.+.+||.++... ...
T Consensus 328 ~~r~HaGE~g~~~~l~~al--L----~----adRIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~l------~~~--- 388 (496)
T cd01319 328 VLRPHCGEAGDIDHLASAF--L----L----AHGISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSL------FLS--- 388 (496)
T ss_pred ceeeecCCCCChHHHHHHh--h----c----CcccccccccCCCHHHHHHHHHcCCeEEEecCccHhh------hcC---
Confidence 5789997655555555544 1 1 457889987743 33444667899999999998511 111
Q ss_pred hhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 459 AERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 459 ~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
-...|+..+++.|++++++||.+..- . .+.++...+.. ..+++..+..+++ .|+.+.-+.+
T Consensus 389 --~~~HP~~~~l~~Gl~VsInTDDPl~f~~t~~~L~eEY~~a~~------------~~~Ls~~Dl~eLa-rNSV~~Sf~~ 453 (496)
T cd01319 389 --YEKNPFPEFFKRGLNVSLSTDDPLQFHFTKEPLMEEYSIAAQ------------VWKLSTCDMCELA-RNSVLQSGFE 453 (496)
T ss_pred --cccChHHHHHHCCCeEEEeCCCchhhCCCCCcHHHHHHHHHH------------HcCCCHHHHHHHH-HHHHHHhCCC
Confidence 22457999999999999999987442 2 24555544442 2358998876654 7888888775
Q ss_pred C
Q 008063 535 N 535 (579)
Q Consensus 535 ~ 535 (579)
+
T Consensus 454 ~ 454 (496)
T cd01319 454 H 454 (496)
T ss_pred H
Confidence 4
No 144
>PLN03055 AMP deaminase; Provisional
Probab=94.08 E-value=0.25 Score=53.45 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=84.7
Q ss_pred HHHCCC---eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--ChhhHHHHhhCCcEEEecccccccchhH
Q 008063 375 SDKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--ASGTAARFGDQGIVASMQPQHLLDDADS 449 (579)
Q Consensus 375 a~~~g~---~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~~~~~~~~~~~i~~~~~p~~~~~~~~~ 449 (579)
-++.|+ .+..||-+.+..+.+.+++ . ....|.|+..+ ++....++...+|.+.+||.++...
T Consensus 409 R~~rglnT~~~rpHAGEag~~~~v~~al------L----~a~RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~l--- 475 (602)
T PLN03055 409 RESKGLNTIKFRPHAGEAGDIDHLAAAF------L----LAHNIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSL--- 475 (602)
T ss_pred HHHcCCCCCCccccCCCCCCHHHHHHHh------h----CCceecCccccCCCHHHHHHHHHcCCeEEEccCcchhh---
Confidence 344454 3578886444444444433 1 14578888865 4577778889999999999998621
Q ss_pred HHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcH
Q 008063 450 ARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTL 525 (579)
Q Consensus 450 ~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~ 525 (579)
... -...|+..+++.|++|+++||.|... . .+.++...+.. ..+++..+..+++ .
T Consensus 476 ---~~~-----y~~HP~~~~~~~Gl~VSInTDDPl~f~tT~epL~eEY~~aa~------------~~~LS~~DL~eLa-r 534 (602)
T PLN03055 476 ---FLD-----YHRNPFPMFFARGLNVSLSTDDPLQIHLTKEPLVEEYSIAAQ------------VWKLSSCDLCEIA-R 534 (602)
T ss_pred ---ccc-----hhhChHHHHHHCCCEEEEcCCCcchhcCCCCcHHHHHHHHHH------------HhCCCHHHHHHHH-H
Confidence 111 23458999999999999999987543 1 24555544443 2358999876654 7
Q ss_pred HHHHhcccCC
Q 008063 526 SAARACFLEN 535 (579)
Q Consensus 526 npA~~lgl~~ 535 (579)
|+.+.-+++.
T Consensus 535 NSV~~Sf~~~ 544 (602)
T PLN03055 535 NSVLQSGFPH 544 (602)
T ss_pred HHHHHhcCCH
Confidence 9888887754
No 145
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=93.90 E-value=6.9 Score=38.24 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCCh---------hhHHHHhh-CCc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLAS---------GTAARFGD-QGI 434 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~---------~~~~~~~~-~~i 434 (579)
.+.+++.++...+.|+.+.++... .++.+.+..+.. ..+.+..+.||..... +.+.++++ -++
T Consensus 123 a~~~r~~~~rL~~~gl~fdl~~~~----~ql~~~i~l~~~---~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la~~pNv 195 (279)
T COG3618 123 APAWRANVERLAKLGLHFDLQVDP----HQLPDLIPLALK---APDVNFVLDHCGRPDIKINLEDPWKAALARLARRPNV 195 (279)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeCh----hhhHHHHHHHhh---CCCCCEEeccCCCCCccccccCHHHHHHHHHHhCCCe
Confidence 367899999999999999988753 222222222221 2356788999876521 22223333 333
Q ss_pred EEEecc--cccccchhHHHHhhChhhhhhhhhhHHHHHH-CC-CeeeecCCCCCCCCC-HHHHHHHHHcccCCCCCCCCC
Q 008063 435 VASMQP--QHLLDDADSARKKLGVDRAERESYLFQSLLA-NN-ALLALGSDWPVADIN-PLCAIRTAMKRIPPGWDNAWI 509 (579)
Q Consensus 435 ~~~~~p--~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~G-i~v~~gsD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 509 (579)
.+=+.= .+...+ +-.+ ...+-...+.+ .| -++.+|||+|..... -+.+...+....
T Consensus 196 ~~KlSG~~~~~~~~--w~~~--------~v~p~~e~~i~~fg~dR~vfGSdwPv~~l~~~~~~~~~~~~~~--------- 256 (279)
T COG3618 196 WAKLSGVYAYSDES--WTVE--------DVRPYVEELIELFGWDRFVFGSDWPVTSLESDFASWVAATREL--------- 256 (279)
T ss_pred EEEEeeecccccCC--CCHH--------HHHHHHHHHHHhcCccceEecCCCCcccccCChHHHHHHHHHH---------
Confidence 222111 011000 0000 11112233333 46 489999999987632 222222222211
Q ss_pred CCCCCCHHHHHHHHcHHHHHhccc
Q 008063 510 PSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 510 ~~~~ls~~~al~~~T~npA~~lgl 533 (579)
..+ +..+=-+..-.||++++++
T Consensus 257 -v~~-~~~er~~i~~~NA~rly~~ 278 (279)
T COG3618 257 -VPG-DAAERARILVDNARRLYRL 278 (279)
T ss_pred -cCC-CHHHHHHHHhhCHHHHhCC
Confidence 011 4666667777788887654
No 146
>PRK06361 hypothetical protein; Provisional
Probab=93.19 E-value=0.43 Score=45.25 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=65.3
Q ss_pred CceEeeccCCChhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHH
Q 008063 412 RFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLC 491 (579)
Q Consensus 412 ~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~ 491 (579)
-..+.|...+..+.++.+++.++.+.++...... . ....-++...+.|++++++||.. .+.+..
T Consensus 114 ~dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~~---------~-----~~~~~l~~a~~~gi~vv~~SDaH-~~~d~~- 177 (212)
T PRK06361 114 VDILAHPGLITEEEAELAAENGVFLEITARKGHS---------L-----TNGHVARIAREAGAPLVINTDTH-APSDLI- 177 (212)
T ss_pred CcEecCcchhhHHHHHHHHHcCeEEEEECCCCcc---------c-----chHHHHHHHHHhCCcEEEECCCC-CHHHHH-
Confidence 4567777666777888899999999887532110 0 11123566677899999999975 332222
Q ss_pred HHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhccc
Q 008063 492 AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFL 533 (579)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl 533 (579)
.+..++.- ....|++.++++++.+.||+..|+.
T Consensus 178 ~~~~~~~i---------~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 178 TYEFARKV---------ALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred HHHHHHHH---------HcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 33333221 1456799999999999999999874
No 147
>PLN02768 AMP deaminase
Probab=92.75 E-value=0.57 Score=52.00 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=81.6
Q ss_pred eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHHHHhhChhh
Q 008063 381 QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDR 458 (579)
Q Consensus 381 ~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~ 458 (579)
.+..||-+.+..+.+.+++ + ....|.|+..+. +....++...+|.+.+||.++.. . ...
T Consensus 651 ~fRPHAGEag~~e~I~~Al--L--------~AdRIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~~---l---~~~--- 711 (835)
T PLN02768 651 KFRPHSGEAGDIDHLAATF--L--------TCHNIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNS---L---FLD--- 711 (835)
T ss_pred ccccccCCCCCHHHHHHHH--h--------cCCccCCccccCcCHHHHHHHHHcCCeEEECCCcchh---h---hcc---
Confidence 3678887555555555554 1 134678887663 44555777789999999999862 1 111
Q ss_pred hhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC
Q 008063 459 AERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 459 ~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~ 534 (579)
-...|++.+++.|++|++.||.+... . .+.++...+.. ..+++..+..+++ .|....-+++
T Consensus 712 --y~~HPf~~f~~~GL~VSLNTDDPL~fhtT~epL~EEYsvAak------------~~~LS~~DL~ELa-rNSV~aSff~ 776 (835)
T PLN02768 712 --YHRNPFPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAAS------------VWKLSSCDLCEIA-RNSVYQSGFS 776 (835)
T ss_pred --hhhChHHHHHHCCCEEEEcCCCccccCCCCCCHHHHHHHHHH------------HhCcCHHHHHHHH-HHHHHHhcCC
Confidence 23458999999999999999987553 2 25555544443 2358999877765 7888888776
Q ss_pred C
Q 008063 535 N 535 (579)
Q Consensus 535 ~ 535 (579)
.
T Consensus 777 ~ 777 (835)
T PLN02768 777 H 777 (835)
T ss_pred H
Confidence 4
No 148
>PRK08392 hypothetical protein; Provisional
Probab=91.98 E-value=3.9 Score=38.79 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=30.3
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
+.++.+++.|+.+.++.... ++ ...-++.+.+.|+++++|||+-
T Consensus 141 ~i~~~~~~~g~~lEiNt~~~----------~p------~~~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 141 EILDLAEAYGKAFEISSRYR----------VP------DLEFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred HHHHHHHHhCCEEEEeCCCC----------CC------CHHHHHHHHHcCCEEEEeCCCC
Confidence 34567788888888775321 11 1123678888999999999964
No 149
>PTZ00310 AMP deaminase; Provisional
Probab=91.90 E-value=0.78 Score=54.14 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=85.9
Q ss_pred HHCCC---eEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC--hhhHHHHhhCCcEEEecccccccchhHH
Q 008063 376 DKSGL---QVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA--SGTAARFGDQGIVASMQPQHLLDDADSA 450 (579)
Q Consensus 376 ~~~g~---~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~--~~~~~~~~~~~i~~~~~p~~~~~~~~~~ 450 (579)
++.|+ .+..||-+.+..+.+.+++ + ....|.|+..+. +....++...+|.+.+||.++.. .
T Consensus 1103 ~~rglnTf~~rpHAGEag~~~hI~~Al--L--------~a~RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~---l- 1168 (1453)
T PTZ00310 1103 ASRGFSTFALRPHCGESGSMDHLYGAF--L--------CANSICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNA---L- 1168 (1453)
T ss_pred HHCCCCCcCccccCCCCCCHHHHHHHH--h--------CCccccchhhhCcCHHHHHHHHHcCCeEEECCCchHh---h-
Confidence 44555 4678887555556655554 1 145789998764 45556788899999999999852 1
Q ss_pred HHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-CC---HHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 451 RKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-IN---PLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 451 ~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
... -...|+..+++.|++++++||.+... .. ..++...+.. ..+++..+..+++ .|
T Consensus 1169 --~~s-----y~~hP~~~f~~~Gl~VSLnTDDPl~f~tT~EpL~eEYsiaa~------------~~~LS~~Dl~ela-rN 1228 (1453)
T PTZ00310 1169 --FLA-----FLENPFPVFFHRGLNVSLSTDDPLMFHQTQEPLIEEYSIAAR------------VWGLSLNDLCEIA-RN 1228 (1453)
T ss_pred --hhc-----hhhCcHHHHHHCCCEEEECCCCccccCCCcccHHHHHHHHHH------------HhCCCHHHHHHHH-HH
Confidence 112 23458999999999999999987442 22 4445443332 3458999977765 79
Q ss_pred HHHhcccCC
Q 008063 527 AARACFLEN 535 (579)
Q Consensus 527 pA~~lgl~~ 535 (579)
+...-|.+.
T Consensus 1229 SV~~SGf~~ 1237 (1453)
T PTZ00310 1229 SVLQSGFDA 1237 (1453)
T ss_pred HHHHcCCCH
Confidence 988888763
No 150
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=91.41 E-value=0.064 Score=45.46 Aligned_cols=20 Identities=45% Similarity=1.016 Sum_probs=17.8
Q ss_pred CCeeecccccccccccccCc
Q 008063 98 GKVVVPGFIDSHVHFIPGGL 117 (579)
Q Consensus 98 g~~V~PG~ID~H~H~~~~~~ 117 (579)
|++++|||||.|+|+..++.
T Consensus 1 ~kli~~g~vd~hVhlrepg~ 20 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGF 20 (142)
T ss_pred Cceeehhhhhhhhhhhcccc
Confidence 68999999999999987764
No 151
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=91.33 E-value=10 Score=35.93 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecch--------HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhh-HHHHhhCCcEE
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGD--------RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGT-AARFGDQGIVA 436 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~-~~~~~~~~i~~ 436 (579)
....-++++..+.|+++-+|-.-+ .+....+..+.++..+. ...+..++||+..+.-. ++-..+..+..
T Consensus 117 ~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~Lhqrf--P~LKivlEHcTt~dAv~~ve~a~~~sVaa 194 (344)
T KOG2902|consen 117 GKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQLHQRF--PQLKIVLEHCTTMDAVNFVESAKEGSVAA 194 (344)
T ss_pred hhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHHHHHhC--ccceeHHHhcccHHHHHHHHhhcCCceee
Confidence 345566777788999999986522 22334445555544443 35678889998877533 33355555666
Q ss_pred EecccccccchhH
Q 008063 437 SMQPQHLLDDADS 449 (579)
Q Consensus 437 ~~~p~~~~~~~~~ 449 (579)
.+++++.....+.
T Consensus 195 TvTahHL~Lt~~d 207 (344)
T KOG2902|consen 195 TVTAHHLLLTRND 207 (344)
T ss_pred EeehheeEEehhh
Confidence 7778877644433
No 152
>PTZ00310 AMP deaminase; Provisional
Probab=90.74 E-value=1.1 Score=52.85 Aligned_cols=135 Identities=14% Similarity=0.030 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCeE---EEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCC-hhhHHHH-hhCCcEEEecccc
Q 008063 368 LLSMTMASDKSGLQV---AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLA-SGTAARF-GDQGIVASMQPQH 442 (579)
Q Consensus 368 l~~~~~~a~~~g~~i---~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~-~~~~~~~-~~~~i~~~~~p~~ 442 (579)
+..+=..-++.|+.. -.||...+.++..+..+-. ...|.|+..+. +..+..+ ...+|.+.+||.+
T Consensus 465 l~~LN~lR~~RGlNTf~LRPhcgeag~~dhLv~~fLl----------adRI~HGi~l~d~p~LqyL~~e~qI~LeVCPlS 534 (1453)
T PTZ00310 465 LAVLNSLRKRKGLNTLQLRPSGEKAPAYDQLISSYLL----------GDVITRATSIADYPVLQYLCGLHRVGLTVSPLR 534 (1453)
T ss_pred HHHHHHHHHhCCCCeEEecCCCCCCCCHHHHHHHHHh----------hccccchhccCchHHHHHHHHHcCCeEEECCCc
Confidence 333333334556543 3565545556655544322 33788887654 3444444 4899999999999
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC-C---CHHHHHHHHHcccCCCCCCCCCCCCCCCHHH
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD-I---NPLCAIRTAMKRIPPGWDNAWIPSERISLTD 518 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ 518 (579)
+....- .. -...|++.+++.|+++++.||.|... . .+.++...+.. ..+++..+
T Consensus 535 N~~l~v-----~s-----y~~HPi~~fl~~GL~VSLNTDDPl~F~tt~EpL~EEY~iaaq------------~~gLS~~D 592 (1453)
T PTZ00310 535 DHALSI-----TA-----YFDHPLPKFLHRCLRVSISTSDPLYFHHHSQPLIEEYATAMK------------LFSLSPLD 592 (1453)
T ss_pred ccccCC-----Cc-----hhhCcHHHHHHCCCEEEECCCCccccCCCCccHHHHHHHHHH------------HhCcCHHH
Confidence 974331 01 33458999999999999999988653 2 24555544442 34589988
Q ss_pred HHHHHcHHHHHhcccCC
Q 008063 519 ALIAHTLSAARACFLEN 535 (579)
Q Consensus 519 al~~~T~npA~~lgl~~ 535 (579)
..+++ .|+...-++++
T Consensus 593 L~eLa-rNSV~aSf~~~ 608 (1453)
T PTZ00310 593 TTELA-RNSVLNSSFPP 608 (1453)
T ss_pred HHHHH-HHHHHHhCCCH
Confidence 77765 78888877764
No 153
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=90.19 E-value=4.1 Score=40.71 Aligned_cols=140 Identities=15% Similarity=0.046 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHH---HHH---HHHHHHHHHHhcCCCCCCceEeecc--CCChhhHHHH--hhCC
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRA---NDL---VLDMYKSVVVTTGKRDQRFRIEHAQ--HLASGTAARF--GDQG 433 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~---~~~---~~~~~~~~~~~~~~~~~~~~i~H~~--~~~~~~~~~~--~~~~ 433 (579)
+++.+..+.+.|.++|+++.+|.-.... ... .--.+..+..+. ...+..+.|+. +.-..+...+ ...+
T Consensus 142 ~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~f--P~l~IVl~H~G~~~p~~~~a~~~a~~~~n 219 (293)
T COG2159 142 DDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKF--PELKIVLGHMGEDYPWELEAIELAYAHPN 219 (293)
T ss_pred CChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHC--CCCcEEEEecCCCCchhHHHHHHHHhCCC
Confidence 3455899999999999999999752211 010 000122233333 35688899996 3332222222 2234
Q ss_pred cEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCC-eeeecCCCCCCCCCHHHHHHHHHcccCCCCCCCCCCCC
Q 008063 434 IVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNA-LLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSE 512 (579)
Q Consensus 434 i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi-~v~~gsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+.+.+.-.... +.. + .-+..+.+.+- ++.+|||.|...+..+-... ...
T Consensus 220 vy~d~s~~~~~--------~~~-----~--~~~~~~~~~~~dkilFGSD~P~~~~~~~l~~~---------------~~l 269 (293)
T COG2159 220 VYLDTSGVRPK--------YFA-----P--PLLEFLKELGPDKILFGSDYPAIHPEVWLAEL---------------DEL 269 (293)
T ss_pred ceeeeeccccc--------cCC-----h--HHHHHHHhcccCeEEecCCCCCcCHHHHHHHH---------------Hhc
Confidence 44443322110 000 0 12345555232 79999998766554332222 223
Q ss_pred CCCHHHHHHHHcHHHHHhcccCC
Q 008063 513 RISLTDALIAHTLSAARACFLEN 535 (579)
Q Consensus 513 ~ls~~~al~~~T~npA~~lgl~~ 535 (579)
+++.+.--...-.|+++.+|++.
T Consensus 270 ~l~~e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 270 GLSEEVKEKILGENAARLLGLDP 292 (293)
T ss_pred CCCHHHHHHHHHHhHHHHhCcCC
Confidence 47887778888889999999864
No 154
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=86.60 E-value=1.6 Score=42.64 Aligned_cols=142 Identities=15% Similarity=0.021 Sum_probs=73.9
Q ss_pred HHHHHHHHHCCCeEEEEec--ch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCC--Ch-hhHHHHhhC-CcEEEec
Q 008063 369 LSMTMASDKSGLQVAIHAI--GD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL--AS-GTAARFGDQ-GIVASMQ 439 (579)
Q Consensus 369 ~~~~~~a~~~g~~i~iH~~--g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~--~~-~~~~~~~~~-~i~~~~~ 439 (579)
..+++.+.++|+++.+|+. +. .........+..+..+++ +.+..+.|+... .- +.+..+.+. ++.+.++
T Consensus 120 ~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P--~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s 197 (273)
T PF04909_consen 120 DPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFP--DLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLS 197 (273)
T ss_dssp HHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHST--TSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECH
T ss_pred HHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhc--CCeEEEecCcccchhHHHHHHHHHhCCccccccc
Confidence 5899999999999999964 11 111122233344455554 578889999887 22 333333332 4555433
Q ss_pred ccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCCCCHH-HHHHHHHcccCCCCCCCCCCCCCCCH
Q 008063 440 PQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVADINPL-CAIRTAMKRIPPGWDNAWIPSERISL 516 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ls~ 516 (579)
-....... .... .....+..+.+ .|. ++++|||.|....... .......... .++.
T Consensus 198 ~~~~~~~~------~~~~---~~~~~l~~~~~~~g~drilfGSD~P~~~~~~~~~~~~~~~~~~------------~l~~ 256 (273)
T PF04909_consen 198 GIPPFWYF------WPPS---FDRPFLRRAVDEFGPDRILFGSDYPHPDGASPYEYIWEAYFLD------------DLSE 256 (273)
T ss_dssp SHHSSEEE------ETTH---HCHHHHHHHHHHHTGGGEEEE--TTSSTHHHHHHHHHHHHHHH------------HSSH
T ss_pred cccccccc------Cccc---ccHHHHHHHHHHhCCceEEecCCCCCCCccccHHHHHHhhhcc------------CCCH
Confidence 21000000 0000 11122334433 344 7999999987754222 2222111100 0588
Q ss_pred HHHHHHHcHHHHHhccc
Q 008063 517 TDALIAHTLSAARACFL 533 (579)
Q Consensus 517 ~~al~~~T~npA~~lgl 533 (579)
++.=+....|+++++|+
T Consensus 257 ~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 257 EEREKILYDNARRLYGL 273 (273)
T ss_dssp HHHHHHHTHHHHHHHTC
T ss_pred HHHHHHHhHhHHHHcCc
Confidence 99889999999999875
No 155
>PRK06740 histidinol-phosphatase; Validated
Probab=85.44 E-value=35 Score=34.73 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=31.7
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
+.++.+++.|+.+.++..+...... ...++ ...-++.+.+.|+++++|||+
T Consensus 243 ~I~~a~~~~g~~lEINt~~~~r~~~--~e~yP------~~~il~~~~e~Gv~~tlgSDA 293 (331)
T PRK06740 243 EIARALVETNTATEINAGLYYRYPV--REMCP------SPLFLQVLAKHEVPITLSSDA 293 (331)
T ss_pred HHHHHHHHcCCEEEEECccccCCCC--CCCCc------CHHHHHHHHHCCCeEEEeeCC
Confidence 4456678889988888753221000 00111 112367888899999999997
No 156
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=81.36 E-value=28 Score=33.48 Aligned_cols=116 Identities=10% Similarity=-0.017 Sum_probs=68.1
Q ss_pred CceEeeccC------CChhhHHHHhhCCcEEEecccccccch-hHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCC
Q 008063 412 RFRIEHAQH------LASGTAARFGDQGIVASMQPQHLLDDA-DSARKKLGVDRAERESYLFQSLLANNALLALGSDWPV 484 (579)
Q Consensus 412 ~~~i~H~~~------~~~~~~~~~~~~~i~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~ 484 (579)
...+.|... .....++..++.|+.+.++-....... ......+. .....++...+.|+++.++||...
T Consensus 104 vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~-----~~~~~~~~~~~~g~piiisSdAh~ 178 (237)
T PRK00912 104 VDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLS-----NFRDNLALARKYDFPLVLTSGAMS 178 (237)
T ss_pred CcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHH-----HHHHHHHHHHhcCCCEEEeCCCCc
Confidence 456667643 345667788889998887755432100 00000000 111235666678999999999643
Q ss_pred CC-CCHHHHHHHHHcccCCCCCCCCCCCCCCCHHHHHHHHcHHHHHhcccC-CccccccCCC
Q 008063 485 AD-INPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLE-NDVGSLSPGK 544 (579)
Q Consensus 485 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~npA~~lgl~-~~~G~I~~G~ 544 (579)
.. ...+....... ...|++.++++++.+.+|.+.+... .+.+.|..|.
T Consensus 179 ~~~l~~~~~~~~l~------------~~~Gl~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 228 (237)
T PRK00912 179 CYDLRSPREMIALA------------ELFGMEEDEALKALSYYPESIIKKNRNRKNYVIEGV 228 (237)
T ss_pred ccccCCHHHHHHHH------------HHcCCCHHHHHHHHHHhHHHHHHhhccCCCcccccE
Confidence 32 22222222222 2356999999999999999998764 2344555553
No 157
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=80.85 E-value=36 Score=33.76 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=51.8
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
+++-+++|.+...|+.+|+.. +.+..++..++..... .+-.+.|+...+.+++.++.+.++.+..++.+..
T Consensus 137 FekQl~LA~~~~~Pl~iH~r~--a~~d~~eIl~~~~~~~----~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k 207 (296)
T KOG3020|consen 137 FEKQLDLAKRLKLPLFIHCRS--AHEDLLEILKRFLPEC----HKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSLK 207 (296)
T ss_pred HHHHHHHHHHccCCeeeechh--hhHHHHHHHHHhcccc----CCceEEEeccCCHHHHHHHHHccEEecccceeee
Confidence 577799999999999999953 3344444444432221 1258999999999999999999977777666553
No 158
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=78.60 E-value=59 Score=30.50 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCccEEEeCCcCCCC--CccccchHHHHHHHHHHhhcCCCeeEEEE
Q 008063 250 LRASNLALSRGVTTVVDFGRYYPG--ESVQLSWEDFADVYQWASYSEKMKIRVCL 302 (579)
Q Consensus 250 ~~~~~~~~~~Git~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 302 (579)
...++.+.+.|+|++..-+.++.+ .++...+.+-...++...+..++++.+..
T Consensus 23 l~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~p 77 (254)
T COG4464 23 LAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLP 77 (254)
T ss_pred HHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceecc
Confidence 446777889999998865443322 22223333333444455556666666653
No 159
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=78.44 E-value=90 Score=32.54 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcC--C----CeeEEEEccCccchhhHHHHHHhcCC
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSE--K----MKIRVCLFFPLETWSSLADLINKTGH 321 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~i~v~~~~~~~~~~~~~~~~~~~~~ 321 (579)
.+..+.+.+++.|+|.+.|+-. |.. . ..+.+.|+..++.. + .++.+....+.++..+.++.... .
T Consensus 87 dF~~GTkAAlaGGtTmiID~vl--p~~--~---~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~-e- 157 (522)
T KOG2584|consen 87 DFFQGTKAALAGGTTMIIDFVL--PDK--G---TSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVK-E- 157 (522)
T ss_pred hhhcccHHHhcCCceEEEEEec--CCC--C---chHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhh-h-
Confidence 3445778899999999999742 211 1 23344444433332 2 33333333344444444444321 0
Q ss_pred CCCCceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHCCCeEEEEec
Q 008063 322 VLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAI 387 (579)
Q Consensus 322 ~~~~~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~i~iH~~ 387 (579)
...++++++. .|. ++..++++++.+.++..++.|....+|+.
T Consensus 158 -----kGvnsF~~fm-------------ayk------~~~~v~d~~lye~l~~~~~lgala~vHAE 199 (522)
T KOG2584|consen 158 -----KGVNSFKFFM-------------AYK------DLYMVRDSELYEALKVCAELGALAMVHAE 199 (522)
T ss_pred -----cCcceEEeee-------------eec------cccccCHHHHHHHHHHHhhcchhheehhh
Confidence 1122333332 222 24457899999999999999999999996
No 160
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=69.84 E-value=40 Score=33.74 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=76.2
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeec---------cCCChhhHHHHhhCCcEEE-
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHA---------QHLASGTAARFGDQGIVAS- 437 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~---------~~~~~~~~~~~~~~~i~~~- 437 (579)
=+++++.+.+.|+.+++-..++.....+++.- ..+...+|+ -.++++.++.+++.|-.+-
T Consensus 151 Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s----------~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv 220 (313)
T COG2355 151 GKELVREMNELGIIIDLSHLSDKTFWDVLDLS----------KAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGV 220 (313)
T ss_pred HHHHHHHHHhcCCEEEecccCCccHHHHHhcc----------CCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEE
Confidence 47889999999999987666666666655541 224444555 4678999999999885443
Q ss_pred -ecccccccchhHHHHhhChhhh--hhhhhhHHHHHH-CCC-eeeecCCCCCCC--------CCHHHHHHHHHcccCCCC
Q 008063 438 -MQPQHLLDDADSARKKLGVDRA--ERESYLFQSLLA-NNA-LLALGSDWPVAD--------INPLCAIRTAMKRIPPGW 504 (579)
Q Consensus 438 -~~p~~~~~~~~~~~~~l~~~~~--~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~--------~~~~~~~~~~~~~~~~~~ 504 (579)
..|.+... .. ..++ ......+..+.+ .|+ .|++|||.-... ...+..+-.++.
T Consensus 221 ~~~~~fl~~-~~-------~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~------ 286 (313)
T COG2355 221 NFIPAFLRP-GG-------AARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALI------ 286 (313)
T ss_pred EeehhhccC-CC-------CCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHH------
Confidence 33443321 00 0110 011122333444 365 699999954332 122333433332
Q ss_pred CCCCCCCCCCCHHHHHHHHcHHHHHhc
Q 008063 505 DNAWIPSERISLTDALIAHTLSAARAC 531 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~npA~~l 531 (579)
+.|.+.+++=..+-.|=-+.+
T Consensus 287 ------~~G~~e~~i~~i~~~N~lRV~ 307 (313)
T COG2355 287 ------ERGYSEEEIEKIAGENWLRVL 307 (313)
T ss_pred ------HcCCCHHHHHHHHHHhHHHHH
Confidence 345777777666666655544
No 161
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=66.93 E-value=54 Score=33.03 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeecc---------CCChhhHHHHhhCCcEE
Q 008063 366 ESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ---------HLASGTAARFGDQGIVA 436 (579)
Q Consensus 366 ~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~---------~~~~~~~~~~~~~~i~~ 436 (579)
+.-+++++...+.|+-+.+-..++.....+++.. ..+...+|.. .++++.++.+++.|..+
T Consensus 154 ~~G~~vv~~mn~lGmiiDvSH~s~~~~~dv~~~s----------~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvi 223 (309)
T cd01301 154 PFGKELVREMNRLGIIIDLSHLSERTFWDVLDIS----------NAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVI 223 (309)
T ss_pred HHHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHhc----------CCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEE
Confidence 3457788888999999987655666666555543 1245566654 47899999999998766
Q ss_pred EecccccccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCC
Q 008063 437 SMQPQHLLDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWP 483 (579)
Q Consensus 437 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~ 483 (579)
.++........ .+....+.....+..+.+ .|+ .|++|||..
T Consensus 224 gi~~~~~fl~~------~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfd 266 (309)
T cd01301 224 GVNFYPAFLSP------GADATLDDVVRHIDYIVDLIGIDHVGLGSDFD 266 (309)
T ss_pred EEeeeHHHhCC------CCCCCHHHHHHHHHHHHHhcCCCeEEECcccC
Confidence 55432211000 000000122333444444 466 699999954
No 162
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=65.60 E-value=38 Score=34.25 Aligned_cols=112 Identities=18% Similarity=0.249 Sum_probs=71.6
Q ss_pred cCCCHHHHHHHHHHHHHCC-CeEEEEecch---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 361 QVMELESLLSMTMASDKSG-LQVAIHAIGD---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g-~~i~iH~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
...+.+++.+..+.|++.| .+..+=+.+. ....++.+..+......+ ....+..+ -++++.++++++.|+..
T Consensus 82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~---le~c~slG-~l~~eq~~~L~~aGvd~ 157 (335)
T COG0502 82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG---LEVCASLG-MLTEEQAEKLADAGVDR 157 (335)
T ss_pred hcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC---cHHhhccC-CCCHHHHHHHHHcChhh
Confidence 3468899999999999999 6665544433 566777777777665544 34455555 67899999999999744
Q ss_pred Eecccccccch-hHHHHhhChhhhhhhhhhHHHHHHCCCeeeec
Q 008063 437 SMQPQHLLDDA-DSARKKLGVDRAERESYLFQSLLANNALLALG 479 (579)
Q Consensus 437 ~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~g 479 (579)
.- ||.+.. +.+.+..+-...++.+..+..+.+.|+.+..|
T Consensus 158 yn---hNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsG 198 (335)
T COG0502 158 YN---HNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSG 198 (335)
T ss_pred ee---cccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccc
Confidence 32 222222 22333333333345566778888888876544
No 163
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=59.90 E-value=1.7e+02 Score=28.51 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccccc
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
+.+.+...++.|++.+.++++|..... ..-++.+.+.....|....+....|+..... .....|+..++-..
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~--~~~~~~i~~~ak~~G~~~~~VVkHha~p~v~----~~~~~Gi~pSV~as-- 214 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLD--EETYEEIAEMAKEAGIKPYRVVKHHAPPLVL----KCEEVGIFPSVPAS-- 214 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC--hHHHHHHHHHHHHhCCCcceeEeecCCccch----hhhhcCcCCccccc--
Confidence 557788889999999999999986332 2334445555666666555555555543222 12223443332211
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC---------CCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD---------INPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
+. .+.+..+.|-+.++=||.--++ .......+..+ ++..+
T Consensus 215 -----------------r~--~v~~a~~~g~~FmmETDyIDDp~RpgavL~PktVPrr~~~i~------------~~g~~ 263 (285)
T COG1831 215 -----------------RK--NVEDAAELGPRFMMETDYIDDPRRPGAVLGPKTVPRRTREIL------------EKGDL 263 (285)
T ss_pred -----------------HH--HHHHHHhcCCceEeecccccCcccCCCcCCccchhHHHHHHH------------HhcCC
Confidence 10 4678888999999999953222 12222333333 23347
Q ss_pred CHHHHHHHHcHHHHHhcccC
Q 008063 515 SLTDALIAHTLSAARACFLE 534 (579)
Q Consensus 515 s~~~al~~~T~npA~~lgl~ 534 (579)
+.+.+.+..-.||.+.+|++
T Consensus 264 ~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 264 TEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred cHHHHHHHHHhCHHHHhCcc
Confidence 89999999999999999875
No 164
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=59.26 E-value=37 Score=34.40 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=69.6
Q ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCC----CCCCceEeeccCCChhhHHHHhhCCcEEEeccccc
Q 008063 368 LLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGK----RDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHL 443 (579)
Q Consensus 368 l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~ 443 (579)
=+++++...+.|+-+++-..++.....+++..+. |+ ...+-.+.|--.++++.++.+++.|-.+-++....
T Consensus 162 G~~vV~~mn~lGm~vDvSH~s~~t~~Dv~~~s~~-----PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~~~ 236 (320)
T PF01244_consen 162 GREVVREMNRLGMLVDVSHLSEKTFWDVLEISKK-----PVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFYPA 236 (320)
T ss_dssp HHHHHHHHHHHT-EEE-TTB-HHHHHHHHHH-SS-----EEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESSHH
T ss_pred HHHHHHHHHHcCCeeeeccCCHHHHHHHHhhcCC-----CEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcchh
Confidence 4677888889999998755566655555543221 10 01122233444678999999999997776654432
Q ss_pred ccchhHHHHhhChhhhhhhhhhHHHHHH-CCC-eeeecCCCCCCC--------CCHHHHHHHHHcccCCCCCCCCCCCCC
Q 008063 444 LDDADSARKKLGVDRAERESYLFQSLLA-NNA-LLALGSDWPVAD--------INPLCAIRTAMKRIPPGWDNAWIPSER 513 (579)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~l~~l~~-~Gi-~v~~gsD~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
.-..++ -...........+..+.+ .|+ .|++|||..... ...+..+...+.+ .|
T Consensus 237 fl~~~~----~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~------------rG 300 (320)
T PF01244_consen 237 FLGDDW----DPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLK------------RG 300 (320)
T ss_dssp HHSTTH----SSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHH------------TT
T ss_pred hhcccc----cccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHH------------CC
Confidence 100000 000000122223334444 366 699999963221 2345555555542 35
Q ss_pred CCHHHHHHHHcHHHHHhc
Q 008063 514 ISLTDALIAHTLSAARAC 531 (579)
Q Consensus 514 ls~~~al~~~T~npA~~l 531 (579)
++.+++=..+-.|--+.+
T Consensus 301 ~s~~~i~kI~g~N~lRv~ 318 (320)
T PF01244_consen 301 YSEEDIEKILGGNFLRVL 318 (320)
T ss_dssp S-HHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHhHhHHHHh
Confidence 788887776666655544
No 165
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=47.30 E-value=18 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.6
Q ss_pred CCeEEEEEECCEEeC
Q 008063 564 SASIEATYVSGVQAY 578 (579)
Q Consensus 564 ~~~v~~v~v~G~~v~ 578 (579)
..-|.+|||||++++
T Consensus 17 ~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVV 31 (48)
T ss_dssp -BSEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEE
Confidence 458999999999986
No 166
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.12 E-value=2.6e+02 Score=26.61 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHH-HHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYK-SVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQP 440 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p 440 (579)
.+.+...++.+...+.|+++.==.. .... ...++.+. +...+++ ...+.=++.++.++.+...+.|..+.++|
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a-~~~i~~l~~~~~~~~p----~~~vGaGTVl~~e~a~~a~~aGA~FiVsP 98 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFA-HEVFAELVKYAAKELP----GMILGVGSIVDAATAALYIQLGANFIVTP 98 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcH-HHHHHHHHHHHHhhCC----CeEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 5788999999999999999643222 2222 22222222 2222222 56777788999999999999999999999
Q ss_pred cccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 441 QHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
..+.. -++...+.|++..-|.
T Consensus 99 ~~~~~-------------------v~~~~~~~~i~~iPG~ 119 (222)
T PRK07114 99 LFNPD-------------------IAKVCNRRKVPYSPGC 119 (222)
T ss_pred CCCHH-------------------HHHHHHHcCCCEeCCC
Confidence 97641 2356677888776554
No 167
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=46.84 E-value=2.2e+02 Score=29.64 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCccEEEeCCc
Q 008063 248 ALLRASNLALSRGVTTVVDFGR 269 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~ 269 (579)
-+..+++.+.++|++.|+-+..
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDA 120 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDA 120 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechh
Confidence 4567889999999999998764
No 168
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.06 E-value=2.6e+02 Score=26.24 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+...++.+...+.|+++.-=.... ...++.+++..+.++ ...+.=++.++.++.+...+.|..+.+.|..
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~----~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVP----DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCC----CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC
Confidence 578899999999999999975322222 223334444444443 4677778899999999999999999999997
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
+.. -++...+.|++..-|.
T Consensus 90 ~~~-------------------v~~~~~~~~i~~iPG~ 108 (204)
T TIGR01182 90 TPE-------------------LAKHAQDHGIPIIPGV 108 (204)
T ss_pred CHH-------------------HHHHHHHcCCcEECCC
Confidence 531 2356677888776543
No 169
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.44 E-value=2.6e+02 Score=26.14 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+...++.+...+.|+++.==..... ..++.+++...+++ ...+.=++.++.++.+...+.|..+.++|..
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp---~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~ 85 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTP---AALDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAKAGSRFIVSPGT 85 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHHHHcCCCEEECCCC
Confidence 5788999999999999999642222222 23334444444443 4677778899999999999999999999997
Q ss_pred cccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 443 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
+.. -++...+.|++..-|.
T Consensus 86 ~~~-------------------vi~~a~~~~i~~iPG~ 104 (201)
T PRK06015 86 TQE-------------------LLAAANDSDVPLLPGA 104 (201)
T ss_pred CHH-------------------HHHHHHHcCCCEeCCC
Confidence 631 2356777888776554
No 170
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm10 is an SmD1-like protein which is thought to bind U7 snRNA along with LSm11 and five other Sm subunits to form a 7-member ring structure. LSm10 and the U7 snRNP of which it is a part are thought to play an important role in histone mRNA 3' processing.
Probab=45.33 E-value=37 Score=26.31 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=29.7
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEec
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG 78 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig 78 (579)
...|.+.++|+++.++++....-+.+.|++..|.+|-
T Consensus 40 D~~MNl~L~~~~~~~~~~~~~~~~~v~IRG~nI~yI~ 76 (78)
T cd01733 40 DAFMNIRLAKVTIIDRNGKQVQVEEIMVTGRNIRYVH 76 (78)
T ss_pred cCCceeEEEEEEEEcCCCceeECCcEEEECCEEEEEE
Confidence 4678899999999887766545678999999998873
No 171
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.24 E-value=2.9e+02 Score=27.28 Aligned_cols=109 Identities=9% Similarity=0.067 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EEec-chHHH---HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVA-IHAI-GDRAN---DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~-iH~~-g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
.+++++.+.++.+++.|+.-. +-.. +.... ...++.+.+.....+ .+. ..+...++++.++++++.|+...
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~---i~~-~~~~g~~~~e~l~~Lk~aG~~~v 137 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMG---LKT-CATLGLLDPEQAKRLKDAGLDYY 137 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCC---CeE-EecCCCCCHHHHHHHHHcCCCEE
Confidence 456776666666777787532 2221 11111 223333333333333 222 34555788999999999986443
Q ss_pred ecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeee
Q 008063 438 MQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLA 477 (579)
Q Consensus 438 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~ 477 (579)
..-.- ...+.+.+..+..........++.+.+.|+.+.
T Consensus 138 ~i~~E--~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 138 NHNLD--TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVC 175 (296)
T ss_pred EEccc--CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22111 122333333332223244567888999999854
No 172
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=42.21 E-value=71 Score=33.06 Aligned_cols=42 Identities=31% Similarity=0.609 Sum_probs=32.4
Q ss_pred CeEEeCCCCeeecccccccccccccCccccccccCCCCCHHHHHHHHHHHHH
Q 008063 91 TNVLNLQGKVVVPGFIDSHVHFIPGGLQMARVKLRGVSHKDEFVRRVKEAVK 142 (579)
Q Consensus 91 ~~viD~~g~~V~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 142 (579)
.++||++|++|+||+||+|+|+..... ...+++.+..+++..
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~----------~~~e~~~s~s~aA~~ 43 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPGF----------EYKETLESGAKAAAA 43 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCCc----------cccchHHHHHHHHHh
Confidence 478999999999999999999876532 345566666666654
No 173
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D3 heterodimerizes with subunit B and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=39.63 E-value=50 Score=24.92 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=28.5
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEec
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG 78 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig 78 (579)
..|.+.++|+.+...++.....+.+.|++..|.+|-
T Consensus 32 ~~MNl~L~~~~~~~~~g~~~~~~~v~IRG~nI~~v~ 67 (70)
T cd01721 32 DNMNCQLKDVTVTARDGRVSQLEQVYIRGSKIRFFI 67 (70)
T ss_pred CCceeEEEEEEEECCCCcEeEcCcEEEeCCEEEEEE
Confidence 568899999988777766555678999999998874
No 174
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=39.22 E-value=5.8e+02 Score=28.36 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEE-EEc-cCccchhhHHHHHHhcCCCCCC
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRV-CLF-FPLETWSSLADLINKTGHVLSD 325 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~~~-~~~~~~~~~~~~~~~~~~~~~~ 325 (579)
-++.+++.+.++|+..++-+...+ ..+.+....+.+.+.+..-.-. ++. -+..+.+...+..+.......+
T Consensus 97 vv~~~v~~a~~~Gidv~Rifd~ln-------d~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad 169 (596)
T PRK14042 97 VVRAFVKLAVNNGVDVFRVFDALN-------DARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCD 169 (596)
T ss_pred HHHHHHHHHHHcCCCEEEEcccCc-------chHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 456688899999999998875432 2344555555555555432222 111 1222223333333322221222
Q ss_pred ceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHH-CCCeEEEEecch
Q 008063 326 WVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDK-SGLQVAIHAIGD 389 (579)
Q Consensus 326 ~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~i~iH~~g~ 389 (579)
.+.. .|..+ ..+|..+.++++..++ .++++.+|++.+
T Consensus 170 ~I~I----------------------kDtaG-----~l~P~~v~~lv~alk~~~~ipi~~H~Hnt 207 (596)
T PRK14042 170 SIAI----------------------KDMAG-----LLTPTVTVELYAGLKQATGLPVHLHSHST 207 (596)
T ss_pred EEEe----------------------CCccc-----CCCHHHHHHHHHHHHhhcCCEEEEEeCCC
Confidence 2111 11111 1578888888888765 579999999844
No 175
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=37.96 E-value=3.9e+02 Score=26.01 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCC-ChhhHHHHhhCCcEEEeccc
Q 008063 367 SLLSMTMASDKS-GLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-ASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 367 ~l~~~~~~a~~~-g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~-~~~~~~~~~~~~i~~~~~p~ 441 (579)
.+..+++.+++. ++++.+|......++..++. | ...+-|.... +++.++.+++.+..+...+.
T Consensus 62 rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~--------G----~~iINsis~~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 62 RVVPVIKALRDQPDVPISVDTYRAEVARAALEA--------G----ADIINDVSGGQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc--------C----CCEEEECCCCCCchhHHHHHHcCCcEEEEeC
Confidence 367777888776 99999998766666655543 2 4577777766 66788888888887776554
No 176
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.07 E-value=3.9e+02 Score=25.19 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+....+.+...+.|+++.==.... ...++.++++..+++ ..+...+.=++.++.++++...+.|..+.+.|..
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~-~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~ 97 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYK-DDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSF 97 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcC-CCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCC
Confidence 478899999999999999975322222 223344444444432 1124677778899999999999999999999998
Q ss_pred ccc
Q 008063 443 LLD 445 (579)
Q Consensus 443 ~~~ 445 (579)
+..
T Consensus 98 ~~~ 100 (213)
T PRK06552 98 NRE 100 (213)
T ss_pred CHH
Confidence 753
No 177
>PRK07945 hypothetical protein; Provisional
Probab=34.83 E-value=74 Score=32.47 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=47.9
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCC--CCHHHHHHHHHccc
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVAD--INPLCAIRTAMKRI 500 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~--~~~~~~~~~~~~~~ 500 (579)
++.++.+++.|+.+.++..... .. ....-++...+.|+++++|||..... .........+
T Consensus 248 ~~i~~a~~e~g~~lEINt~~~r---------~~-----P~~~il~~a~e~G~~vtigSDAH~p~~v~~~~~~~~~a---- 309 (335)
T PRK07945 248 EAVFAACREHGTAVEINSRPER---------RD-----PPTRLLRLALDAGCLFSIDTDAHAPGQLDWLGYGCERA---- 309 (335)
T ss_pred HHHHHHHHHhCCEEEEeCCCCC---------CC-----ChHHHHHHHHHcCCeEEecCCCCChhhcchHHHHHHHH----
Confidence 5777889999999988865431 11 11224678889999999999964332 1122222222
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHcHH
Q 008063 501 PPGWDNAWIPSERISLTDALIAHTLS 526 (579)
Q Consensus 501 ~~~~~~~~~~~~~ls~~~al~~~T~n 526 (579)
.+.|+++++++...|..
T Consensus 310 ---------~~~g~~~~~i~n~~~~~ 326 (335)
T PRK07945 310 ---------EEAGVPADRIVNTWPAD 326 (335)
T ss_pred ---------HHcCCCHHHcccCCCHH
Confidence 23457888877766543
No 178
>PRK06256 biotin synthase; Validated
Probab=34.73 E-value=3.8e+02 Score=27.14 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHCCCe-EEEEecch----HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQ-VAIHAIGD----RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~-i~iH~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~ 437 (579)
.+++++.+.++.+.+.|.. +.+-..+. ...+.+.+.++...... ... ...+...++++.++++++.|+...
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~---~i~-~~~~~g~l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEET---DLE-ICACLGLLTEEQAERLKEAGVDRY 166 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcC---CCc-EEecCCcCCHHHHHHHHHhCCCEE
Confidence 5788888888888888864 33222222 22345555555443321 112 233445688999999999997544
Q ss_pred ec-ccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeee
Q 008063 438 MQ-PQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLA 477 (579)
Q Consensus 438 ~~-p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~ 477 (579)
.. ..+ ..+.+...-+....++....++.+.+.|+.+.
T Consensus 167 ~~~lEt---s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 167 NHNLET---SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred ecCCcc---CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 22 222 22223322222223345567888889998643
No 179
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=34.44 E-value=4.2e+02 Score=25.31 Aligned_cols=140 Identities=12% Similarity=0.008 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeecc------CCChhhHHHHhhCCcEEE
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQ------HLASGTAARFGDQGIVAS 437 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~------~~~~~~~~~~~~~~i~~~ 437 (579)
++..+++.++..+..=.-+.++.......+..... . -.+.+.|-. .++-..++.+++.++.+.
T Consensus 62 s~~~~r~~~~kfr~~~dlI~V~~~~lkv~R~Av~~--------~---rVDil~~p~~~r~~~gldh~~a~laa~~~vale 130 (229)
T COG1603 62 SPSQLRRLVKKFRSKVDLIAVEPGSLKVNRAAVEN--------K---RVDILSHPETGRKDPGLDHVLARLAAEKGVALE 130 (229)
T ss_pred ChHHHHHHHHhhhcceeEEEEccCcHHHHHHHHhc--------c---CccEEEcccccCCCccccHHHHHHHHhcCceEE
Confidence 46778887777765534455554333333332221 1 123444422 223356777888888776
Q ss_pred eccccccc-chhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC--CCCHHHHHHHHHcccCCCCCCCCCCCCCC
Q 008063 438 MQPQHLLD-DADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA--DINPLCAIRTAMKRIPPGWDNAWIPSERI 514 (579)
Q Consensus 438 ~~p~~~~~-~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 514 (579)
..=..... ++..-...+... .-.++...+.++++.++||.-.. -.+|..-+..+. -.|+
T Consensus 131 isl~~ll~~~g~~Ra~~l~~l-----r~~lrl~rk~~v~ivvtS~A~s~~elrsP~dv~sl~~-------------~lG~ 192 (229)
T COG1603 131 ISLRPLLRSSGYRRARLLSFL-----RSLLRLARKYDVPIVVTSDAESPLELRSPRDVISLAK-------------VLGL 192 (229)
T ss_pred EehHHhhccchhHHHHHHHHH-----HHHHHHHHhcCCCEEEeCCCCChhhhcChhhHHHHHH-------------HhCC
Confidence 54333221 111100112111 12345556789999999996322 145555444432 2468
Q ss_pred CHHHHHHHHcHHHHHhcc
Q 008063 515 SLTDALIAHTLSAARACF 532 (579)
Q Consensus 515 s~~~al~~~T~npA~~lg 532 (579)
+..||-.+++..|.+.|.
T Consensus 193 e~~ea~~~~~~~p~~iL~ 210 (229)
T COG1603 193 EDDEAKKSLSEYPRLILR 210 (229)
T ss_pred CHHHHHHHHHHhHHHHHH
Confidence 999999999999999997
No 180
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.45 E-value=78 Score=31.06 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=34.1
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCC
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWP 483 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~ 483 (579)
++.++.+++.|+.+.++........ ...+ ....-++.+.+.|+++++|||+-
T Consensus 180 ~~il~~~~~~g~~lEiNt~~~r~~~---~~~y------p~~~il~~~~~~g~~itigSDAH 231 (269)
T PRK07328 180 EEALDVIAAAGLALEVNTAGLRKPV---GEIY------PSPALLRACRERGIPVVLGSDAH 231 (269)
T ss_pred HHHHHHHHHcCCEEEEEchhhcCCC---CCCC------CCHHHHHHHHHcCCCEEEeCCCC
Confidence 4567788889999988875432110 0011 12224678888999999999973
No 181
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=31.50 E-value=86 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=27.9
Q ss_pred CCCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEec
Q 008063 42 NLEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVG 78 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig 78 (579)
...|.+.++|+++....+....-+.+.|++..|.+|-
T Consensus 32 D~~MNl~L~~a~~~~~~~~~~~~~~v~IRG~nI~yi~ 68 (90)
T cd01724 32 DPSMNTHLKNVKLTLKGRNPVPLDTLSIRGNNIRYFI 68 (90)
T ss_pred cCceeEEEEEEEEEcCCCceeEcceEEEeCCEEEEEE
Confidence 3567888899888776655445578889988888885
No 182
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=30.93 E-value=4.2e+02 Score=24.96 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~-iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
.+.++...+.+..-+.|++.. +-...+. ..+.+..+...++ +..+.=++.+++++++.+.+.|..+.++|.
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~----a~e~I~~l~~~~p----~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~ 93 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPA----ALEAIRALAKEFP----EALIGAGTVLNPEQARQAIAAGAQFIVSPG 93 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCC----HHHHHHHHHHhCc----ccEEccccccCHHHHHHHHHcCCCEEECCC
Confidence 467888888999999999864 3333322 2233333333333 557777889999999999999999999999
Q ss_pred ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecC
Q 008063 442 HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
.+.+ -++...+.|+++.-|.
T Consensus 94 ~~~e-------------------v~~~a~~~~ip~~PG~ 113 (211)
T COG0800 94 LNPE-------------------VAKAANRYGIPYIPGV 113 (211)
T ss_pred CCHH-------------------HHHHHHhCCCcccCCC
Confidence 8742 2356667777666554
No 183
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=29.01 E-value=3.9e+02 Score=27.55 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHH-HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE-EEec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRAN-DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV-ASMQ 439 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~-~~~~ 439 (579)
++.+.+.++++.+.+.|+.. ++.. |+... ....+.++.+ ...++ .....+.+..++++.++.+++.++. +.+.
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~-v~~~GGEPll~~~~~~il~~~-~~~g~--~~~i~TNG~ll~~~~~~~L~~~g~~~v~iS 121 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQ-LHFSGGEPLLRKDLEELVAHA-RELGL--YTNLITSGVGLTEARLAALKDAGLDHIQLS 121 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcE-EEEECCccCCchhHHHHHHHH-HHcCC--cEEEECCCccCCHHHHHHHHHcCCCEEEEE
Confidence 67889999999999988643 3333 43222 1223333332 22232 1124455667888899999888642 3332
Q ss_pred ccccccchhHHHHhhChh-hhhhhhhhHHHHHHCCCeeeecC
Q 008063 440 PQHLLDDADSARKKLGVD-RAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~~-~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
-... ..+.+....+.. ...+.+..++.+.+.|+.+.+.+
T Consensus 122 ldg~--~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 122 FQDS--DPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred ecCC--CHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 2221 112222222321 23355667888889998877654
No 184
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=28.69 E-value=5.2e+02 Score=24.64 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEec-----chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEe
Q 008063 364 ELESLLSMTMASDKSGLQVAIHAI-----GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASM 438 (579)
Q Consensus 364 ~~~~l~~~~~~a~~~g~~i~iH~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~ 438 (579)
+...+.+-...+.+.|..-.+-.- |.-..+...+.++..-+..+ -....|..+.++++++++++.++-++.
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~----l~inaHvGfvdE~~~eklk~~~vdvvs 115 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTG----LLINAHVGFVDESDLEKLKEELVDVVS 115 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhC----eEEEEEeeeccHHHHHHHHHhcCcEEE
Confidence 345565555666666665443222 23345555666655555444 457899999999999999998887765
Q ss_pred cccccccchhHHHHhhChhh-hhhhhhhHHHHHHCCCe----eeecCCCCCCCCCHHHHHHHHHcccCC---------CC
Q 008063 439 QPQHLLDDADSARKKLGVDR-AERESYLFQSLLANNAL----LALGSDWPVADINPLCAIRTAMKRIPP---------GW 504 (579)
Q Consensus 439 ~p~~~~~~~~~~~~~l~~~~-~~~~~~~l~~l~~~Gi~----v~~gsD~~~~~~~~~~~~~~~~~~~~~---------~~ 504 (579)
..... +.+...+.++... .+.....+..+.++|++ +.+|-|..-.. .-+.++.....--.+ ..
T Consensus 116 LDfvg--Dn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~-~e~kaIdiL~~~~~DalVl~vliPtp 192 (275)
T COG1856 116 LDFVG--DNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIH-GEFKAIDILVNYEPDALVLVVLIPTP 192 (275)
T ss_pred EeecC--ChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCccc-chHHHHHHHhcCCCCeEEEEEEecCC
Confidence 54332 3344555555321 12334457788889986 45677653222 223333322211100 00
Q ss_pred CCCCCCCCCCCHHHHHHHHcH
Q 008063 505 DNAWIPSERISLTDALIAHTL 525 (579)
Q Consensus 505 ~~~~~~~~~ls~~~al~~~T~ 525 (579)
...+.....-+++|+++..-.
T Consensus 193 Gtkm~~~~pp~~eE~i~v~~~ 213 (275)
T COG1856 193 GTKMGNSPPPPVEEAIKVVKY 213 (275)
T ss_pred chhccCCCCcCHHHHHHHHHH
Confidence 122334556789999988743
No 185
>PLN02417 dihydrodipicolinate synthase
Probab=28.66 E-value=5.8e+02 Score=25.12 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCeeEEEEccCccchhhHHHHHH
Q 008063 247 EALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLIN 317 (579)
Q Consensus 247 ~~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 317 (579)
+.++..++.+...|+.++.-.|+. |-.+.-+.++-.++.+...+...-.+.+.......+..+..+..+
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~Gst--GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~ 90 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTT--GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATE 90 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccC--cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHH
Confidence 456778888899999999887653 333334555666666554444333344444444444444444433
No 186
>PLN02389 biotin synthase
Probab=27.99 E-value=6.8e+02 Score=26.00 Aligned_cols=110 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEe------cc-hHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCc
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHA------IG-DRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGI 434 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i 434 (579)
..+++++.+.++.+.+.|+.-..-. .+ +...+.+.+.+.... ..+ .. .......++++.++++++.|+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik-~~~---l~-i~~s~G~l~~E~l~~LkeAGl 189 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIR-GMG---ME-VCCTLGMLEKEQAAQLKEAGL 189 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHh-cCC---cE-EEECCCCCCHHHHHHHHHcCC
Confidence 4689999999998888888643211 11 133556666665553 222 12 223344678999999999987
Q ss_pred EEEecccccccc-hhHHHHhhChhhhhhhhhhHHHHHHCCCeeeec
Q 008063 435 VASMQPQHLLDD-ADSARKKLGVDRAERESYLFQSLLANNALLALG 479 (579)
Q Consensus 435 ~~~~~p~~~~~~-~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~g 479 (579)
.-... +... .+.+.+..+....++.+..++.+++.|+.+..|
T Consensus 190 d~~~~---~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg 232 (379)
T PLN02389 190 TAYNH---NLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSG 232 (379)
T ss_pred CEEEe---eecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEE
Confidence 53322 1111 112222223333445566788999999876443
No 187
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.46 E-value=3.9e+02 Score=25.17 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHCCCeEE-EEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 363 MELESLLSMTMASDKSGLQVA-IHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~-iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
.+.++..++.+...+.|+++. +-...+ ..++.++++...++ ...+.=.+.+++++.+...+.|..+.+.|.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~----~~~~~I~~l~~~~p----~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP----AALEAIRLIAKEVP----EALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc----cHHHHHHHHHHHCC----CCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 578899999999999999864 222222 33344444444443 456666778899999999999999999999
Q ss_pred ccccchhHH
Q 008063 442 HLLDDADSA 450 (579)
Q Consensus 442 ~~~~~~~~~ 450 (579)
.+..-.+.+
T Consensus 96 ~~~~vi~~a 104 (212)
T PRK05718 96 LTPPLLKAA 104 (212)
T ss_pred CCHHHHHHH
Confidence 876433333
No 188
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.22 E-value=78 Score=20.79 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=13.7
Q ss_pred eEEEEECCEEEEecChH
Q 008063 65 DSMAIKNGRIVSVGNYS 81 (579)
Q Consensus 65 ~~v~I~~GkI~~Ig~~~ 81 (579)
-.|.|.||+|++|...+
T Consensus 18 V~iiiqdG~vvQIe~~E 34 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEKTE 34 (38)
T ss_pred EEEEEECCEEEEEEhhh
Confidence 36888999999997653
No 189
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=26.86 E-value=8.4e+02 Score=26.44 Aligned_cols=108 Identities=9% Similarity=0.133 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCccEEEeCCcCCCCCccccchHHHHHHHHHHhhcCCCe-eEEEEc-cCccchhhHHHHHHhcCCCCCC
Q 008063 248 ALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMK-IRVCLF-FPLETWSSLADLINKTGHVLSD 325 (579)
Q Consensus 248 ~~~~~~~~~~~~Git~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~~~-~~~~~~~~~~~~~~~~~~~~~~ 325 (579)
..+..++.+.++|+..+.-+... + ..+......+.+.+.+... ..++.. .+..+.+...+..+.......+
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~l----n---dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad 170 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDAL----N---DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGAD 170 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecC----C---hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 45668888999999888765432 1 2345555555666655543 222221 2222233333333322221222
Q ss_pred ceEEceEEEEEcCccCCCcccccCCCCCCCCCCcccCCCHHHHHHHHHHHHHC---CCeEEEEecch
Q 008063 326 WVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKS---GLQVAIHAIGD 389 (579)
Q Consensus 326 ~~~~~g~k~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~i~iH~~g~ 389 (579)
.+.. .|..+. .+|+.+.++++..++. ++++.+|++.+
T Consensus 171 ~I~I----------------------kDtaGl-----l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt 210 (499)
T PRK12330 171 SICI----------------------KDMAAL-----LKPQPAYDIVKGIKEACGEDTRINLHCHST 210 (499)
T ss_pred EEEe----------------------CCCccC-----CCHHHHHHHHHHHHHhCCCCCeEEEEeCCC
Confidence 2111 111111 6788899999888765 69999999844
No 190
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=26.77 E-value=1.1e+02 Score=23.49 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=29.3
Q ss_pred CCCccEEEEcCeEEeCCCCCCe-eeEEEEECCEEEEec
Q 008063 42 NLEADLVVTNGVIFTGDDSLLF-ADSMAIKNGRIVSVG 78 (579)
Q Consensus 42 ~~~~~~likn~~v~~~~~~~~~-~~~v~I~~GkI~~Ig 78 (579)
...|++.++|++..+.+|.... .+.+.|++..|..|.
T Consensus 32 D~~mNi~L~~~~~~~~~g~~~~~~~~v~IRG~~I~~i~ 69 (76)
T cd01723 32 DNWMNIHLREVICTSKDGDKFWKMPECYIRGNTIKYLR 69 (76)
T ss_pred cCCCceEEEeEEEECCCCcEeeeCCcEEEeCCEEEEEE
Confidence 4678899999998877775433 358999999999985
No 191
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=26.59 E-value=1.3e+02 Score=22.47 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=25.3
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEecC
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSVGN 79 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~Ig~ 79 (579)
..|.++++++.-....+....-+.++|+++.|..|.|
T Consensus 32 ~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~I~~i~~ 68 (68)
T cd01731 32 QHMNLVLEDAEEIDDGEPVRKYGRVVIRGDNVLFISP 68 (68)
T ss_pred CcceEEEeeEEEEecCCeEeEcCcEEEeCCEEEEEcC
Confidence 4677888888766544333345678888888888754
No 192
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=26.12 E-value=8.4e+02 Score=26.20 Aligned_cols=116 Identities=10% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecch----HHHHHHHHHHHHHHHhcCCCCC--CceEeeccCCChhhHHHHhhCCcE
Q 008063 362 VMELESLLSMTMASDKSGLQVAIHAIGD----RANDLVLDMYKSVVVTTGKRDQ--RFRIEHAQHLASGTAARFGDQGIV 435 (579)
Q Consensus 362 ~~~~~~l~~~~~~a~~~g~~i~iH~~g~----~~~~~~~~~~~~~~~~~~~~~~--~~~i~H~~~~~~~~~~~~~~~~i~ 435 (579)
..+.+++.+-++.+.+.|..-..=..|. ..++.+.+.+..........+. +..+. ...++.++++++++.|+.
T Consensus 114 ~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~in-ig~lt~eey~~LkeaGv~ 192 (469)
T PRK09613 114 KLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVN-IAPTTVENYKKLKEAGIG 192 (469)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEE-eecCCHHHHHHHHHcCCC
Confidence 4688999999999999987654333443 2466666666665543211111 23333 456789999999999984
Q ss_pred EE-ecccccccchhHHHHhhC--h-hhhhhhhhhHHHHHHCCCe-eeecC
Q 008063 436 AS-MQPQHLLDDADSARKKLG--V-DRAERESYLFQSLLANNAL-LALGS 480 (579)
Q Consensus 436 ~~-~~p~~~~~~~~~~~~~l~--~-~~~~~~~~~l~~l~~~Gi~-v~~gs 480 (579)
-. +..... ..+.+.+.-+ + ......+..+.++.+.|+. +..|-
T Consensus 193 ~~~l~qETY--~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~ 240 (469)
T PRK09613 193 TYQLFQETY--HKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGV 240 (469)
T ss_pred EEEeccccC--CHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEE
Confidence 42 222221 1133333221 1 1122455677888899986 66554
No 193
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.68 E-value=4.9e+02 Score=26.55 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHH-HHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE-EEec
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRAN-DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV-ASMQ 439 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~-~~~~ 439 (579)
++.+.+.++++.+.+.|+.. ++.. |++-. ....+.++.+ ...+. .....+.+..++++.++++++.++. +.+.
T Consensus 37 l~~e~~~~ii~~~~~~g~~~-v~~~GGEPll~~~~~~ii~~~-~~~g~--~~~l~TNG~ll~~e~~~~L~~~g~~~v~iS 112 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQ-LHFSGGEPLARPDLVELVAHA-RRLGL--YTNLITSGVGLTEARLDALADAGLDHVQLS 112 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcE-EEEeCccccccccHHHHHHHH-HHcCC--eEEEEeCCccCCHHHHHHHHhCCCCEEEEe
Confidence 67889999999999888643 3444 33222 2223333332 22231 1123455667888999999887753 3332
Q ss_pred ccccccchhHHHHhhCh-hhhhhhhhhHHHHHHCCCeeeecC
Q 008063 440 PQHLLDDADSARKKLGV-DRAERESYLFQSLLANNALLALGS 480 (579)
Q Consensus 440 p~~~~~~~~~~~~~l~~-~~~~~~~~~l~~l~~~Gi~v~~gs 480 (579)
-... ..+.+....+. ....+....++.+.+.|+.+.+.+
T Consensus 113 ldg~--~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 113 FQGV--DEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred CcCC--CHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEE
Confidence 2221 11223333331 122245667788889998766543
No 194
>PRK15108 biotin synthase; Provisional
Probab=24.46 E-value=7.7e+02 Score=25.17 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-c--h---HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-G--D---RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVA 436 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g--~---~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~ 436 (579)
.+++++.+..+.+.+.|+.-. +.. + + ...+.+.+.+.... ..+ .. .+.....++++.++++++.|+..
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik-~~~---i~-v~~s~G~ls~e~l~~LkeAGld~ 149 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVK-AMG---LE-TCMTLGTLSESQAQRLANAGLDY 149 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHH-hCC---CE-EEEeCCcCCHHHHHHHHHcCCCE
Confidence 688998888888888887643 222 1 1 23355555554443 222 22 23445567899999999998743
Q ss_pred Eec-ccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeee
Q 008063 437 SMQ-PQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLAL 478 (579)
Q Consensus 437 ~~~-p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~ 478 (579)
... -.+. ...+.+........+.+..++.+++.|+.+..
T Consensus 150 ~n~~leT~---p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~s 189 (345)
T PRK15108 150 YNHNLDTS---PEFYGNIITTRTYQERLDTLEKVRDAGIKVCS 189 (345)
T ss_pred EeeccccC---hHhcCCCCCCCCHHHHHHHHHHHHHcCCceee
Confidence 211 1110 01111122222333556677888889986543
No 195
>PF15581 Imm35: Immunity protein 35
Probab=23.85 E-value=1.9e+02 Score=22.75 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHcHHHHHhcccCCccccccCCCcccEEEeCCCCCCChhhccCCeEEEEEECCEEeC
Q 008063 512 ERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAY 578 (579)
Q Consensus 512 ~~ls~~~al~~~T~npA~~lgl~~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~v~~v~v~G~~v~ 578 (579)
.||+.+|+++..-.-+|+-- -+++-.-+.-|++.|| .|.--+..||++.
T Consensus 44 RGl~~~qV~~kl~ava~~~~-----~~~~vvKkE~~~Iwfd-------------~VrF~f~~GrL~~ 92 (93)
T PF15581_consen 44 RGLPEEQVLYKLEAVAAKGP-----EAKIVVKKEGNIIWFD-------------EVRFNFDEGRLVS 92 (93)
T ss_pred cCCCHHHHHHHHHHHHhcCC-----CcceEEEecCCeEEEc-------------ceeEEeccceEec
Confidence 46999999999866665532 3567777788999999 5666677777663
No 196
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm6 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=23.79 E-value=1.4e+02 Score=22.19 Aligned_cols=35 Identities=3% Similarity=-0.004 Sum_probs=23.7
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEe
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSV 77 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~I 77 (579)
..|.++++++......+....-+.+.|++..|..|
T Consensus 32 ~~mNlvL~~~~~~~~~~~~~~~~~v~IRG~~I~~I 66 (67)
T cd01726 32 GYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 66 (67)
T ss_pred cceeeEEeeEEEEeCCceeeEeCCEEEECCEEEEE
Confidence 56778888876655433333446788888888776
No 197
>PRK08609 hypothetical protein; Provisional
Probab=23.59 E-value=4.8e+02 Score=28.85 Aligned_cols=76 Identities=8% Similarity=0.016 Sum_probs=44.5
Q ss_pred hhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCCCCCHHHHHHHHHcccCCC
Q 008063 424 GTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPG 503 (579)
Q Consensus 424 ~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~~~~~~~~~~~~~~~~~~~ 503 (579)
+.++.+++.|+.+.++..... .. .....++.+.+.|+++++|||..... -+..+..++...
T Consensus 483 ~i~~~a~~~G~~lEINa~~~r---------~~-----~~~~~~~~~~e~Gv~i~igSDAH~~~--~l~~~~~~v~~a--- 543 (570)
T PRK08609 483 QLIELAKETNTALELNANPNR---------LD-----LSAEHLKKAQEAGVKLAINTDAHHTE--MLDDMKYGVATA--- 543 (570)
T ss_pred HHHHHHHHhCCEEEEcCCccc---------cC-----ccHHHHHHHHHcCCEEEEECCCCChh--hhCcHHHHHHHH---
Confidence 344556778998888766431 11 11224688899999999999974322 112333333221
Q ss_pred CCCCCCCCCCCCHHHHHHHHc
Q 008063 504 WDNAWIPSERISLTDALIAHT 524 (579)
Q Consensus 504 ~~~~~~~~~~ls~~~al~~~T 524 (579)
.+.+++++++|+..+
T Consensus 544 ------r~~~~~~~~v~N~~~ 558 (570)
T PRK08609 544 ------RKGWIQKDRVINTWS 558 (570)
T ss_pred ------HHcCCCHHHcccCCC
Confidence 233477777766533
No 198
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=22.84 E-value=80 Score=30.66 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=33.1
Q ss_pred hhhHHHHhhCCcEEEecccccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCC
Q 008063 423 SGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDW 482 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~ 482 (579)
++.++.+++.|+.+.++......... ..+ ....-++...+.|+++++|||+
T Consensus 188 ~~il~~~~~~g~~lEiNt~g~r~~~~---~~y------P~~~il~~~~~~g~~itlgSDA 238 (253)
T TIGR01856 188 QRILKLVASQGKALEFNTSGLRKPLE---EAY------PSKELLNLAKELGIPLVLGSDA 238 (253)
T ss_pred HHHHHHHHHcCCEEEEEcHhhcCCCC---CCC------CCHHHHHHHHHcCCCEEecCCC
Confidence 45667788899999888754321000 011 1122467788899999999996
No 199
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=22.60 E-value=6.4e+02 Score=23.57 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEec-chHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEeccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAI-GDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQ 441 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~ 441 (579)
.+.+.+.++.+.+.+.|+++.==.. ..... +.++.....++ .+..+.=++.++.++++...+.|....+.|.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~----~~i~~l~~~~~---~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPF----DSIAALVKALG---DRALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHH----HHHHHHHHHcC---CCcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 5788999999999999998743222 22222 23444444443 1356666778899999999999999999998
Q ss_pred ccc
Q 008063 442 HLL 444 (579)
Q Consensus 442 ~~~ 444 (579)
...
T Consensus 92 ~~~ 94 (206)
T PRK09140 92 TDP 94 (206)
T ss_pred CCH
Confidence 764
No 200
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit F is capable of forming both homo- and hetero-heptamer ring structures. To form the hetero-heptamer, Sm subunit F initially binds subunits E and G to form a trimer which then assembles onto snRNA along with the D3/B and D1/D2 heterodimers.
Probab=22.46 E-value=1.5e+02 Score=22.07 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=22.7
Q ss_pred CCccEEEEcCeEEeCCCCCCeeeEEEEECCEEEEe
Q 008063 43 LEADLVVTNGVIFTGDDSLLFADSMAIKNGRIVSV 77 (579)
Q Consensus 43 ~~~~~likn~~v~~~~~~~~~~~~v~I~~GkI~~I 77 (579)
..|+++++++......+....-+.++|++..|..|
T Consensus 33 ~~mNi~L~~~~e~~~~~~~~~lg~~~IRG~~I~~i 67 (68)
T cd01722 33 SYMNLQLANTEEYIDGKSTGNLGEVLIRCNNVLYI 67 (68)
T ss_pred CCEEEEEeeEEEEeCCccccCcCcEEEECCEEEEE
Confidence 56777788776554433333456788888877765
No 201
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=22.43 E-value=8.7e+02 Score=25.06 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=62.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecch----HHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcE-
Q 008063 361 QVMELESLLSMTMASDKSGLQVAIHAIGD----RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV- 435 (579)
Q Consensus 361 ~~~~~~~l~~~~~~a~~~g~~i~iH~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~- 435 (579)
...+++++.+.++.+.+.|+.-..=..|. ...+.+.+.+.......+ ... .+...++.+.++++++.|+.
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p----~i~-i~~g~lt~e~l~~Lk~aGv~r 176 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFS----SVS-IEVQPLSEEEYAELVELGLDG 176 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC----Cce-eccCCCCHHHHHHHHHcCCCE
Confidence 34688999999999999997643222233 245666666655544322 122 24556789999999999974
Q ss_pred EEecccccccchhHHHHhh--Chh-hhhhhhhhHHHHHHCCCe
Q 008063 436 ASMQPQHLLDDADSARKKL--GVD-RAERESYLFQSLLANNAL 475 (579)
Q Consensus 436 ~~~~p~~~~~~~~~~~~~l--~~~-~~~~~~~~l~~l~~~Gi~ 475 (579)
+.+...+. +.+.+.+.- ++. ...+.+..++.+.+.|+.
T Consensus 177 ~~i~lET~--~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 217 (371)
T PRK09240 177 VTVYQETY--NPATYAKHHLRGPKRDFEYRLETPERAGRAGIR 217 (371)
T ss_pred EEEEEecC--CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 23222221 112222221 111 122556678888899985
No 202
>PRK13404 dihydropyrimidinase; Provisional
Probab=22.31 E-value=4.7e+02 Score=28.07 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHCCCeE-EEEecchHHHHH
Q 008063 363 MELESLLSMTMASDKSGLQV-AIHAIGDRANDL 394 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i-~iH~~g~~~~~~ 394 (579)
.+...+.+.+..|++.|.++ .+|+....+++.
T Consensus 218 ~E~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~ 250 (477)
T PRK13404 218 AEREATHRAIALAELVDVPILIVHVSGREAAEQ 250 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 35567899999999999999 678875544433
No 203
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=22.30 E-value=2.1e+02 Score=27.52 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=31.7
Q ss_pred hhhHHHHhhCCcEEEeccc--ccccchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeecCCCCCC
Q 008063 423 SGTAARFGDQGIVASMQPQ--HLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVA 485 (579)
Q Consensus 423 ~~~~~~~~~~~i~~~~~p~--~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~gsD~~~~ 485 (579)
.+.++.+.+.|+.+.+... ... ....-++...+.|+.++++||+-..
T Consensus 150 ~~~~~~~~~~g~aleins~~~~~~----------------~~~~~~~~~~e~G~~~~i~tDaH~~ 198 (237)
T COG1387 150 EELIELAEKNGKALEINSRPGRLD----------------PNSEILRLARELGVKLAIGTDAHRP 198 (237)
T ss_pred HHHHHHHHHhCcEEeecCCcCccC----------------chHHHHHHHHHhCCeEEeecCcCCh
Confidence 4566777888888876655 221 2222356677889999999997543
No 204
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.28 E-value=5.1e+02 Score=24.98 Aligned_cols=70 Identities=9% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
++.+...++.+.+++.|+....-.....+++.+. +... ...-+.-+...+...++.+++.|..+.+....
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~----~~~~------~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLE----ELGV------PAYKIASGDLTNLPLLEYIAKTGKPVILSTGM 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHH----HHT-------SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHH----HcCC------CEEEeccccccCHHHHHHHHHhCCcEEEECCC
Confidence 6889999999999999999998877655554432 2211 12234445566678888999988877766543
No 205
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.17 E-value=4.9e+02 Score=24.22 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+....+.+...+.|+++.==...... .++.++....+++ ...+.=++.++.++.+...+.|....++|..
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~---a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~ 89 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPN---ALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAIAAGAQFIVSPGF 89 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTT---HHHHHHHHHHHHT----TSEEEEES--SHHHHHHHHHHT-SEEEESS-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCcc---HHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHHHcCCCEEECCCC
Confidence 45678889999999999997432222222 2333343334443 4677778899999999999999999999987
Q ss_pred cc
Q 008063 443 LL 444 (579)
Q Consensus 443 ~~ 444 (579)
+.
T Consensus 90 ~~ 91 (196)
T PF01081_consen 90 DP 91 (196)
T ss_dssp -H
T ss_pred CH
Confidence 64
No 206
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.46 E-value=3.1e+02 Score=27.91 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccc
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 442 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~ 442 (579)
.+.+.++++.+.+++.|+.+..-.....+++.+.+ .+. ..+-+.-....+-..++.+++.|..+.+....
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~--------~~v--~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLED--------LGV--PRFKIPSGEITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--------cCC--CEEEECcccccCHHHHHHHHhcCCcEEEECCC
Confidence 67899999999999999999988776555443322 111 12234444455677888899888777666554
No 207
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.02 E-value=4.8e+02 Score=26.93 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhcCCCCCCceEeeccCCChhhHHHHhhCCcEEEecccccc
Q 008063 365 LESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 444 (579)
Q Consensus 365 ~~~l~~~~~~a~~~g~~i~iH~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~i~~~~~p~~~~ 444 (579)
.+.|+.++..++++|+++.+..-+.. .....+...+...+.+.. .+.-..+.-...+...+++.+ +..+...+....
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~NaGg~n-p~~~a~~v~eia~e~Gl~-lkvA~V~gDd~~~~v~~~~~~-g~~~~~l~~~~~ 133 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITNAGGLN-PAGCADIVREIARELGLS-LKVAVVYGDDLKDEVKELLAE-GETIRPLDTGPP 133 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCC-HHHHHHHHHHHHHhcCCC-eeEEEEECccchHhHHHHHhC-CCCCccCCCCCC
Confidence 35789999999999999998765432 233666677777777765 677777766655544444442 321111111110
Q ss_pred cchhHHHHhhChhhhhhhhhhHHHHHHCCCeeeec
Q 008063 445 DDADSARKKLGVDRAERESYLFQSLLANNALLALG 479 (579)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~l~~l~~~Gi~v~~g 479 (579)
..++..+.+ .-.+.-...|+.+.++.|..+.++
T Consensus 134 -l~~~~~~~~-~a~aylGa~pI~~AL~~GADIVI~ 166 (362)
T PF07287_consen 134 -LSEWDDRIV-SANAYLGAEPIVEALEAGADIVIT 166 (362)
T ss_pred -cchhccccc-eEEEecChHHHHHHHHcCCCEEEe
Confidence 000000000 011113355889999999977775
No 208
>smart00651 Sm snRNP Sm proteins. small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing
Probab=20.98 E-value=1.3e+02 Score=21.99 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=26.0
Q ss_pred CCccEEEEcCeEEeCC-CCCCeeeEEEEECCEEEEec
Q 008063 43 LEADLVVTNGVIFTGD-DSLLFADSMAIKNGRIVSVG 78 (579)
Q Consensus 43 ~~~~~likn~~v~~~~-~~~~~~~~v~I~~GkI~~Ig 78 (579)
..|+++++++...... +.....+.+.|++..|..|.
T Consensus 30 ~~~NlvL~~~~e~~~~~~~~~~~~~~~IrG~~I~~i~ 66 (67)
T smart00651 30 QFMNLVLEDVEETVKDGEKKRKLGLVFIRGNNIVYII 66 (67)
T ss_pred ccccEEEccEEEEecCCcEEeEeCCEEEcCCEEEEEe
Confidence 4678888888887765 33335567888888888775
No 209
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=20.24 E-value=7.3e+02 Score=24.94 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEecch----HHHHHHHHHHHHHHHhcCCCCCCceEeeccCC-ChhhHHHHhhCCcEEE
Q 008063 363 MELESLLSMTMASDKSGLQVAIHAIGD----RANDLVLDMYKSVVVTTGKRDQRFRIEHAQHL-ASGTAARFGDQGIVAS 437 (579)
Q Consensus 363 ~~~~~l~~~~~~a~~~g~~i~iH~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~~-~~~~~~~~~~~~i~~~ 437 (579)
.+.+.++.+++.|.+.+.|+.+-.... ...+.+............. .....|+-+. +.+...+..+.|.+-+
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~---VPValHLDHg~~~e~i~~ai~~GftSV 101 (307)
T PRK05835 25 VNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH---IPVALHLDHGTTFESCEKAVKAGFTSV 101 (307)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC---CeEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 578899999999999999998865421 1122222222222222210 1244444443 4567777778887777
Q ss_pred ecccccc
Q 008063 438 MQPQHLL 444 (579)
Q Consensus 438 ~~p~~~~ 444 (579)
+...+.+
T Consensus 102 M~DgS~l 108 (307)
T PRK05835 102 MIDASHH 108 (307)
T ss_pred EEeCCCC
Confidence 7766654
Done!