Query 008064
Match_columns 579
No_of_seqs 343 out of 2275
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 19:00:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0717 Molecular chaperone (D 100.0 1.5E-80 3.3E-85 652.6 26.1 447 2-511 4-454 (508)
2 COG5269 ZUO1 Ribosome-associat 100.0 6.9E-34 1.5E-38 283.5 14.7 192 5-233 42-236 (379)
3 COG0484 DnaJ DnaJ-class molecu 99.9 3E-23 6.4E-28 218.8 9.0 74 4-81 2-75 (371)
4 KOG0713 Molecular chaperone (D 99.8 4.3E-21 9.2E-26 198.4 8.3 75 4-82 14-88 (336)
5 PRK14288 chaperone protein Dna 99.8 8.7E-19 1.9E-23 186.9 8.6 70 5-78 2-71 (369)
6 PRK14296 chaperone protein Dna 99.8 1.5E-18 3.2E-23 185.3 8.7 71 5-80 3-73 (372)
7 KOG0712 Molecular chaperone (D 99.7 1.7E-18 3.8E-23 180.7 8.1 74 5-85 3-76 (337)
8 PRK14286 chaperone protein Dna 99.7 5.6E-18 1.2E-22 180.9 9.2 72 5-80 3-74 (372)
9 PRK14285 chaperone protein Dna 99.7 1.3E-17 2.8E-22 177.7 9.2 72 5-80 2-73 (365)
10 PRK14287 chaperone protein Dna 99.7 1.1E-17 2.5E-22 178.4 8.5 69 5-78 3-71 (371)
11 PRK14279 chaperone protein Dna 99.7 1.8E-17 3.8E-22 178.2 8.8 70 5-78 8-77 (392)
12 PRK14276 chaperone protein Dna 99.7 1.8E-17 3.8E-22 177.5 8.7 71 5-80 3-73 (380)
13 PRK14301 chaperone protein Dna 99.7 3E-17 6.5E-22 175.4 9.3 71 5-79 3-73 (373)
14 PRK14298 chaperone protein Dna 99.7 2.6E-17 5.7E-22 176.0 8.7 72 3-79 2-73 (377)
15 PRK14297 chaperone protein Dna 99.7 3.4E-17 7.3E-22 175.3 9.3 72 5-80 3-74 (380)
16 PRK14282 chaperone protein Dna 99.7 4.1E-17 8.8E-22 174.1 9.7 71 5-78 3-73 (369)
17 PRK14294 chaperone protein Dna 99.7 3.1E-17 6.6E-22 174.9 8.6 71 5-79 3-73 (366)
18 PRK14277 chaperone protein Dna 99.7 4.3E-17 9.3E-22 174.9 9.7 75 1-80 1-75 (386)
19 PRK14295 chaperone protein Dna 99.7 4.6E-17 1E-21 174.8 9.6 72 5-80 8-83 (389)
20 PRK14299 chaperone protein Dna 99.7 6.3E-17 1.4E-21 167.6 9.5 69 5-78 3-71 (291)
21 PRK10767 chaperone protein Dna 99.7 6E-17 1.3E-21 172.8 9.1 70 5-78 3-72 (371)
22 PRK14278 chaperone protein Dna 99.7 5.9E-17 1.3E-21 173.4 9.1 68 6-78 3-70 (378)
23 PTZ00037 DnaJ_C chaperone prot 99.7 3.8E-17 8.3E-22 176.9 7.1 67 5-79 27-93 (421)
24 PRK14280 chaperone protein Dna 99.7 6.6E-17 1.4E-21 172.9 8.6 71 5-80 3-73 (376)
25 PRK14291 chaperone protein Dna 99.7 7.7E-17 1.7E-21 172.7 8.8 70 5-79 2-71 (382)
26 PRK14283 chaperone protein Dna 99.7 6.9E-17 1.5E-21 172.9 6.7 73 1-79 1-73 (378)
27 PRK14281 chaperone protein Dna 99.7 1.6E-16 3.4E-21 171.2 8.6 72 5-80 2-73 (397)
28 PTZ00341 Ring-infected erythro 99.7 9.5E-17 2E-21 183.4 7.1 72 4-80 571-642 (1136)
29 PRK14284 chaperone protein Dna 99.6 2.8E-16 6E-21 168.9 9.0 71 6-80 1-71 (391)
30 TIGR02349 DnaJ_bact chaperone 99.6 3.1E-16 6.7E-21 166.3 8.6 69 7-80 1-69 (354)
31 PRK14300 chaperone protein Dna 99.6 5.6E-16 1.2E-20 165.5 8.4 69 6-79 3-71 (372)
32 KOG0718 Molecular chaperone (D 99.6 3E-16 6.4E-21 167.3 6.0 76 5-81 8-83 (546)
33 PF00226 DnaJ: DnaJ domain; I 99.6 4.9E-16 1.1E-20 125.1 5.6 64 7-73 1-64 (64)
34 PRK10266 curved DNA-binding pr 99.6 1.3E-15 2.7E-20 158.9 8.4 68 5-77 3-70 (306)
35 KOG0719 Molecular chaperone (D 99.6 6.7E-16 1.4E-20 152.8 5.8 72 4-77 12-83 (264)
36 KOG0691 Molecular chaperone (D 99.6 9.4E-16 2E-20 158.6 6.6 70 5-78 4-73 (296)
37 PRK14290 chaperone protein Dna 99.6 1.2E-15 2.7E-20 162.5 7.4 70 6-78 3-72 (365)
38 KOG0716 Molecular chaperone (D 99.6 1.1E-15 2.3E-20 154.3 5.7 71 6-80 31-101 (279)
39 PRK14289 chaperone protein Dna 99.6 2E-15 4.4E-20 162.0 8.2 71 5-79 4-74 (386)
40 KOG0624 dsRNA-activated protei 99.6 3E-15 6.4E-20 155.6 7.9 74 3-77 391-464 (504)
41 PRK14292 chaperone protein Dna 99.5 4.7E-15 1E-19 158.4 6.7 68 6-78 2-69 (371)
42 PRK14293 chaperone protein Dna 99.5 4.8E-15 1E-19 158.5 6.4 69 5-78 2-70 (374)
43 KOG0715 Molecular chaperone (D 99.5 7.5E-15 1.6E-19 152.0 6.3 69 4-77 41-109 (288)
44 smart00271 DnaJ DnaJ molecular 99.5 3.3E-14 7.2E-19 112.6 6.6 59 6-67 1-59 (60)
45 COG2214 CbpA DnaJ-class molecu 99.5 5.2E-14 1.1E-18 134.5 6.7 73 1-76 1-73 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 1.1E-13 2.3E-18 107.7 6.5 55 7-65 1-55 (55)
47 TIGR03835 termin_org_DnaJ term 99.4 2.3E-13 5E-18 153.2 6.9 70 5-79 1-70 (871)
48 PHA03102 Small T antigen; Revi 99.4 3E-13 6.5E-18 128.0 4.5 66 5-78 4-71 (153)
49 PRK01356 hscB co-chaperone Hsc 99.3 9.6E-13 2.1E-17 126.4 6.3 71 5-76 1-73 (166)
50 KOG0550 Molecular chaperone (D 99.3 8.7E-13 1.9E-17 139.9 5.7 69 4-75 371-439 (486)
51 KOG0714 Molecular chaperone (D 99.3 1.6E-12 3.6E-17 130.3 6.2 73 5-80 2-74 (306)
52 PRK05014 hscB co-chaperone Hsc 99.3 2.5E-12 5.4E-17 124.1 6.9 70 6-75 1-73 (171)
53 KOG0721 Molecular chaperone (D 99.3 2.1E-12 4.6E-17 127.1 6.1 70 4-77 97-166 (230)
54 PRK03578 hscB co-chaperone Hsc 99.3 4.2E-12 9.2E-17 123.0 7.3 75 1-75 1-78 (176)
55 PRK00294 hscB co-chaperone Hsc 99.2 1.8E-11 3.9E-16 118.4 7.5 73 4-76 2-77 (173)
56 KOG0720 Molecular chaperone (D 99.2 2.4E-11 5.2E-16 130.3 5.2 66 5-75 234-299 (490)
57 KOG0722 Molecular chaperone (D 99.1 4.6E-11 1E-15 119.9 2.9 66 5-75 32-97 (329)
58 PRK09430 djlA Dna-J like membr 99.1 1.2E-10 2.6E-15 119.7 6.0 60 6-65 200-262 (267)
59 PTZ00100 DnaJ chaperone protei 99.0 2.8E-10 6.1E-15 103.2 4.2 52 5-64 64-115 (116)
60 PHA02624 large T antigen; Prov 98.9 7.9E-10 1.7E-14 123.7 4.5 60 5-72 10-71 (647)
61 COG5407 SEC63 Preprotein trans 98.9 2.1E-09 4.6E-14 115.0 7.0 74 4-77 96-170 (610)
62 PRK01773 hscB co-chaperone Hsc 98.9 3.8E-09 8.2E-14 102.3 6.8 71 5-75 1-74 (173)
63 TIGR00714 hscB Fe-S protein as 98.7 2.9E-08 6.3E-13 94.7 6.7 60 18-77 3-63 (157)
64 KOG0724 Zuotin and related mol 98.7 7.1E-08 1.5E-12 101.7 9.2 182 17-233 3-189 (335)
65 KOG1150 Predicted molecular ch 98.6 6.8E-08 1.5E-12 94.5 5.1 66 6-74 53-118 (250)
66 PF12171 zf-C2H2_jaz: Zinc-fin 98.5 4.3E-08 9.2E-13 66.7 1.8 26 299-324 2-27 (27)
67 smart00451 ZnF_U1 U1-like zinc 98.1 1.2E-06 2.7E-11 62.3 2.4 32 298-329 3-34 (35)
68 PF12874 zf-met: Zinc-finger o 98.0 2.5E-06 5.4E-11 56.6 2.2 25 299-323 1-25 (25)
69 KOG0568 Molecular chaperone (D 97.7 2.9E-05 6.2E-10 77.8 4.2 53 7-64 48-101 (342)
70 KOG1789 Endocytosis protein RM 97.7 3.5E-05 7.6E-10 89.7 5.2 53 5-64 1280-1336(2235)
71 KOG3408 U1-like Zn-finger-cont 97.7 2.1E-05 4.4E-10 71.6 1.8 37 296-332 55-91 (129)
72 KOG2785 C2H2-type Zn-finger pr 97.6 3.9E-05 8.4E-10 81.6 3.3 39 294-332 64-102 (390)
73 KOG0723 Molecular chaperone (D 97.1 0.00083 1.8E-08 60.2 4.9 48 10-65 60-107 (112)
74 COG5112 UFD2 U1-like Zn-finger 96.6 0.00094 2E-08 59.7 1.4 38 296-333 53-90 (126)
75 PF06220 zf-U1: U1 zinc finger 96.4 0.0024 5.2E-08 47.3 2.5 32 298-329 3-36 (38)
76 KOG3192 Mitochondrial J-type c 96.3 0.004 8.7E-08 59.4 4.0 73 3-75 5-80 (168)
77 KOG0431 Auxilin-like protein a 95.3 0.021 4.6E-07 63.4 5.1 49 14-62 396-447 (453)
78 PLN02748 tRNA dimethylallyltra 95.3 0.013 2.8E-07 65.3 3.4 38 296-333 416-454 (468)
79 PF00096 zf-C2H2: Zinc finger, 95.1 0.014 3.1E-07 37.6 1.9 22 299-320 1-22 (23)
80 COG1076 DjlA DnaJ-domain-conta 95.1 0.016 3.5E-07 56.2 3.2 58 6-63 113-173 (174)
81 KOG0717 Molecular chaperone (D 95.0 0.075 1.6E-06 58.6 8.2 77 146-231 127-203 (508)
82 KOG4727 U1-like Zn-finger prot 94.7 0.019 4.2E-07 55.5 2.4 36 296-331 73-108 (193)
83 PF13912 zf-C2H2_6: C2H2-type 93.7 0.04 8.6E-07 36.9 1.6 23 298-320 1-23 (27)
84 PF13894 zf-C2H2_4: C2H2-type 93.7 0.045 9.8E-07 34.8 1.8 22 299-320 1-22 (24)
85 COG1076 DjlA DnaJ-domain-conta 93.5 0.051 1.1E-06 52.8 2.7 69 7-75 2-73 (174)
86 COG5188 PRP9 Splicing factor 3 93.3 0.041 8.9E-07 58.6 1.7 37 296-332 236-272 (470)
87 PF12756 zf-C2H2_2: C2H2 type 92.1 0.053 1.2E-06 46.1 0.6 31 298-328 50-80 (100)
88 KOG3032 Uncharacterized conser 92.0 0.13 2.8E-06 52.1 3.2 36 295-331 32-67 (264)
89 smart00355 ZnF_C2H2 zinc finge 90.7 0.2 4.2E-06 32.0 2.1 21 299-319 1-21 (26)
90 KOG2837 Protein containing a U 89.8 0.089 1.9E-06 54.4 -0.2 35 298-332 25-59 (309)
91 PF07535 zf-DBF: DBF zinc fing 89.2 0.22 4.8E-06 39.0 1.6 28 297-327 4-31 (49)
92 smart00586 ZnF_DBF Zinc finger 88.8 0.25 5.4E-06 38.8 1.6 30 296-328 3-32 (49)
93 PHA02768 hypothetical protein; 84.6 0.58 1.3E-05 37.6 1.7 24 299-324 6-29 (55)
94 PF04959 ARS2: Arsenite-resist 80.3 1.7 3.7E-05 44.0 3.6 37 297-334 76-112 (214)
95 PF03656 Pam16: Pam16; InterP 78.3 3.1 6.7E-05 38.9 4.3 48 9-64 61-108 (127)
96 PHA00616 hypothetical protein 78.2 1.1 2.4E-05 34.4 1.2 22 299-320 2-23 (44)
97 KOG3454 U1 snRNP-specific prot 75.9 2.8 6.1E-05 40.6 3.4 41 298-338 3-45 (165)
98 KOG0227 Splicing factor 3a, su 70.1 3.1 6.7E-05 41.4 2.3 39 296-334 51-89 (222)
99 KOG1029 Endocytic adaptor prot 70.0 27 0.00058 41.5 9.9 21 192-212 332-353 (1118)
100 PF13913 zf-C2HC_2: zinc-finge 69.9 3.7 8.1E-05 27.6 2.0 21 299-320 3-23 (25)
101 COG5246 PRP11 Splicing factor 65.2 3.6 7.9E-05 40.6 1.6 35 296-330 51-85 (222)
102 KOG2482 Predicted C2H2-type Zn 52.5 5.2 0.00011 43.1 0.3 32 294-325 191-222 (423)
103 PF13446 RPT: A repeated domai 51.9 26 0.00056 28.1 4.3 26 7-32 6-31 (62)
104 PF13465 zf-H2C2_2: Zinc-finge 50.8 6.6 0.00014 26.4 0.5 14 297-310 13-26 (26)
105 PHA00732 hypothetical protein 50.5 10 0.00022 32.5 1.8 22 299-320 2-23 (79)
106 PF10147 CR6_interact: Growth 47.0 1.7E+02 0.0036 30.0 10.0 19 224-242 175-193 (217)
107 KOG2384 Major histocompatibili 46.7 4.8 0.0001 40.3 -0.9 35 295-330 81-115 (223)
108 smart00734 ZnF_Rad18 Rad18-lik 45.3 15 0.00033 24.9 1.7 20 299-319 2-21 (26)
109 KOG0150 Spliceosomal protein F 45.2 19 0.00042 38.3 3.2 35 297-331 9-44 (336)
110 PF14687 DUF4460: Domain of un 45.1 36 0.00077 31.1 4.5 49 16-64 4-52 (112)
111 KOG1994 Predicted RNA binding 43.4 12 0.00026 38.3 1.2 24 296-319 237-260 (268)
112 KOG4848 Extracellular matrix-a 43.3 80 0.0017 31.7 6.9 21 223-243 185-205 (225)
113 PF12269 zf-CpG_bind_C: CpG bi 39.6 38 0.00083 35.0 4.2 18 297-314 83-100 (236)
114 PTZ00448 hypothetical protein; 38.4 25 0.00054 38.4 2.8 37 297-333 313-349 (373)
115 KOG3623 Homeobox transcription 38.4 9.4 0.0002 44.8 -0.4 28 297-324 308-335 (1007)
116 PF14968 CCDC84: Coiled coil p 37.8 18 0.00038 39.2 1.6 31 300-333 1-31 (336)
117 PF08790 zf-LYAR: LYAR-type C2 36.3 8.2 0.00018 27.0 -0.8 19 299-318 1-19 (28)
118 COG4049 Uncharacterized protei 34.8 17 0.00037 29.6 0.7 26 297-323 16-41 (65)
119 PF04988 AKAP95: A-kinase anch 34.7 33 0.00072 33.5 2.7 36 299-334 1-36 (165)
120 COG5067 DBF4 Protein kinase es 34.4 14 0.0003 40.6 0.1 27 297-326 421-447 (468)
121 PF11833 DUF3353: Protein of u 33.2 58 0.0013 32.5 4.3 38 15-64 1-38 (194)
122 PF12756 zf-C2H2_2: C2H2 type 32.1 15 0.00033 30.9 0.0 28 300-328 1-28 (100)
123 KOG1074 Transcriptional repres 32.1 22 0.00047 42.6 1.2 23 298-320 879-901 (958)
124 PF05605 zf-Di19: Drought indu 31.2 40 0.00087 26.3 2.3 22 298-320 2-23 (54)
125 PF02892 zf-BED: BED zinc fing 31.2 26 0.00055 26.0 1.1 24 296-319 14-41 (45)
126 PF09026 CENP-B_dimeris: Centr 30.3 17 0.00037 32.6 0.0 8 413-420 37-44 (101)
127 KOG2785 C2H2-type Zn-finger pr 28.9 42 0.00091 36.8 2.6 35 298-332 3-37 (390)
128 PHA00733 hypothetical protein 28.7 38 0.00083 31.5 2.1 25 298-323 99-123 (128)
129 KOG2462 C2H2-type Zn-finger pr 27.8 32 0.0007 36.2 1.5 27 296-322 159-185 (279)
130 PRK00247 putative inner membra 27.5 1.2E+02 0.0026 34.0 5.9 16 167-182 261-276 (429)
131 PF11931 DUF3449: Domain of un 26.0 1.2E+02 0.0026 30.5 5.1 34 297-330 100-134 (196)
132 PHA00733 hypothetical protein 24.7 47 0.001 30.9 1.9 24 297-320 72-95 (128)
133 PTZ00266 NIMA-related protein 24.5 4.4E+02 0.0096 32.9 10.4 9 192-200 436-444 (1021)
134 KOG1074 Transcriptional repres 24.1 31 0.00067 41.3 0.6 22 300-321 355-376 (958)
135 cd01396 MeCP2_MBD MeCP2, MBD1, 21.8 53 0.0011 28.0 1.5 26 296-321 26-51 (77)
136 PF04423 Rad50_zn_hook: Rad50 21.1 91 0.002 24.3 2.6 30 300-332 22-51 (54)
137 KOG1029 Endocytic adaptor prot 20.8 5.7E+02 0.012 31.2 9.7 8 119-126 197-204 (1118)
138 PF13821 DUF4187: Domain of un 20.6 52 0.0011 26.4 1.1 22 297-318 26-47 (55)
No 1
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-80 Score=652.63 Aligned_cols=447 Identities=38% Similarity=0.586 Sum_probs=338.4
Q ss_pred CCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 008064 2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (579)
Q Consensus 2 ~~~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~ 81 (579)
+..++|||+||||.++|++.+||++||+|||+|||||| | ...++|+++|+.|+.||+|||||++|+|||+|+.+||+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn--p-d~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN--P-DRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC--C-ccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 34688999999999999999999999999999999998 3 36889999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcccchhhhHHHHhhhhHHHHHHhhcCCccccccCCcCCCCCCCcchhh
Q 008064 82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT 161 (579)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~F~~s~f~g~~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~~~~~~~P~fG~~~s~~e~V~ 161 (579)
+...-. +..++++|+||+++||.||+++..|||.||++||..++..|+-|+. +....+|.||++.|+|..|.
T Consensus 81 ~~~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~------d~~~~ap~fg~~~t~ye~~~ 152 (508)
T KOG0717|consen 81 GKNSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLG------DSKLLYPLFGYSTTDYEQVV 152 (508)
T ss_pred CCCCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhcc------CCccccccccCCCCcHHHHH
Confidence 876432 4578999999999999999999999999999999999999987754 34567999999999999999
Q ss_pred hhhhhhhcceeeeccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhHHHHH
Q 008064 162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE 241 (579)
Q Consensus 162 ~FY~~W~~F~T~r~F~w~deyd~~~a~nR~~RR~mEkENkK~R~k~kKE~n~~VR~LV~~vkkrDpRv~~~~~~~~~e~e 241 (579)
.||.||++|+|.++|+|+|+|+++++.+|..||+|+++|+++|+.+|++||++||.||.||+||||||++++.++.++.+
T Consensus 153 ~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~ 232 (508)
T KOG0717|consen 153 PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAY 232 (508)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997776666666
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhhhcchhhhhhccccCcccCCccCchHH-HHhhccCccccccccccccChHHHHHh
Q 008064 242 RKREEEKERKKRLEKERME---RAKRYEEPAWARIDDEGDNEVGNEEGLEEE-EIEKKRSEFYCVLCGKKFKSEKQWTNH 317 (579)
Q Consensus 242 ~kk~ee~~rk~~~~~~~~~---~a~~~~e~~w~~~~~~e~~~~~~~~~~~ee-~~~~~~~~~~C~~C~K~F~s~~~~~nH 317 (579)
+.+ ++..|+.+.+.+++. +...+...+|+...+.++.+....+++++. ..+...+.+||+||+|+|+|++||.||
T Consensus 233 r~k-qe~~Rk~~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNH 311 (508)
T KOG0717|consen 233 RSK-QEESRKQQLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNH 311 (508)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhh
Confidence 533 333444434333332 122323334444344433322222221222 223344559999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhccCCccchhchhccccccccchhhhccCCCCCCCCCCCcccccccccccccccc
Q 008064 318 EQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNE 397 (579)
Q Consensus 318 ~~SkKHk~~~~~l~~~~~~e~~~~~~~~~~~ge~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~d~~~e~~~~~~~~~~~e 397 (579)
++||||+++|..|+++|.+++.-.. +.. +++.+.+ ++ .+
T Consensus 312 EnSKKHkenv~eLrqemEEEe~d~~---------------~~q----------------aee~e~e--~~--------se 350 (508)
T KOG0717|consen 312 ENSKKHKENVAELRQEMEEEEEDEA---------------QGQ----------------AEENELE--DF--------SE 350 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh---------------hhc----------------cccchhh--hh--------hh
Confidence 9999999999999999987541000 000 0000000 00 00
Q ss_pred cccccCCCCCCccccchhhHHHHHHHhccccccccccccccccccccccccccccCCccccccccchhhhhhhhhhhccC
Q 008064 398 VDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKK 477 (579)
Q Consensus 398 ed~d~ee~d~de~ed~~de~~il~~m~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~~~~~~~~~ 477 (579)
+ +-+.+..+.++...+..+..-|+|+.+|.+-...+-...+-+. +++.+.+..++.++++.|.++..+. .|.-
T Consensus 351 e---e~~~d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~e--~~e~d~dtae~ee~d~qk~~~~~k~-~K~~- 423 (508)
T KOG0717|consen 351 E---EPEDDPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDFE--PAEEDGDTAESEEFDQQKNKSVNKK-IKPC- 423 (508)
T ss_pred h---ccccCCCCCchhhhHhhhhhcccchhhhhhhccccccccCCCc--ccccccccccchhhccccccchhhh-cccc-
Confidence 0 1111122333344567889999999999877666655555333 3467777788889999999665543 2221
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCcccCCC
Q 008064 478 SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSS 511 (579)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~s~ 511 (579)
.+++..+.+++++....+.+.+..|..++|+
T Consensus 424 ---~D~k~~a~kvk~pk~~~~kd~~k~a~~~p~~ 454 (508)
T KOG0717|consen 424 ---DDKKDEAKKVKKPKGKVTKDNKKPATVAPSS 454 (508)
T ss_pred ---ccchhhhhhccCCCCCCCCccCCCccCCCCC
Confidence 1566677777777777777777777766665
No 2
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-34 Score=283.49 Aligned_cols=192 Identities=30% Similarity=0.442 Sum_probs=164.5
Q ss_pred ccCcccccCcCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 008064 5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (579)
Q Consensus 5 ~~d~YevLGV~~---~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~ 81 (579)
+.|+|.+|||+. .|++.+|.+|+++.+++||||+..+.| .-.+...|++|+.||+||+|+..|..||+.....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a-- 117 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA-- 117 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhcccccccc--
Confidence 468999999986 799999999999999999999995544 2346889999999999999999999999963211
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCcccchhhhHHHHhhhhHHHHHHhhcCCccccccCCcCCCCCCCcchhh
Q 008064 82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT 161 (579)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~F~~s~f~g~~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~~~~~~~P~fG~~~s~~e~V~ 161 (579)
.+| ..-...+..||.+|+++|++- +.| +..+++|+||+++++...|.
T Consensus 118 ----------dvp-----------pp~~~t~~~Ffe~w~pvFe~e----arF--------SkKqPvPsLg~~dss~keVe 164 (379)
T COG5269 118 ----------DVP-----------PPRIYTPDEFFEVWEPVFERE----ARF--------SKKQPVPSLGPSDSSLKEVE 164 (379)
T ss_pred ----------CCC-----------CccCCCchhHHHHHHHHHHhh----hhc--------cccCCCCCCCCchhHHHHHH
Confidence 111 111223567999999999754 333 34578999999999999999
Q ss_pred hhhhhhhcceeeeccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 008064 162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMM 233 (579)
Q Consensus 162 ~FY~~W~~F~T~r~F~w~deyd~~~a~nR~~RR~mEkENkK~R~k~kKE~n~~VR~LV~~vkkrDpRv~~~~ 233 (579)
.||.||++|.|||+|.++|+--..+.++|..+|..|+.|+..|++.+...|.+|+.||..+.+|||||+-+.
T Consensus 165 ~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fk 236 (379)
T COG5269 165 EFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFK 236 (379)
T ss_pred HHHHHHHhccccccccchhhhcCcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHH
Confidence 999999999999999999998888999999999999999999999999999999999999999999996543
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3e-23 Score=218.77 Aligned_cols=74 Identities=46% Similarity=0.745 Sum_probs=67.8
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~ 81 (579)
.++|||+||||+++||.+|||+|||+||++||||+| ++ .++|.++|++|++||+|||||++|+.||+++...+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 468999999999999999999999999999999999 43 568999999999999999999999999999875543
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.3e-21 Score=198.39 Aligned_cols=75 Identities=44% Similarity=0.709 Sum_probs=69.6
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~~ 82 (579)
..+|||+||||+++|+..+||+|||||||+|||||| | +.+.|.+.|+.|+.||+|||||.+|+.||.+|+..|-.
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 578999999999999999999999999999999999 4 35679999999999999999999999999999877654
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.7e-19 Score=186.90 Aligned_cols=70 Identities=40% Similarity=0.679 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
..|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|++|++||+||+||.+|+.||.++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 47999999999999999999999999999999999 32 245899999999999999999999999998764
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.5e-18 Score=185.28 Aligned_cols=71 Identities=39% Similarity=0.574 Sum_probs=65.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.+|||+||||+++||..+||+|||+||++||||+| +. ..|.++|++|++||+|||||.+|+.||.++...+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n--~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 47999999999999999999999999999999999 21 3588999999999999999999999999987544
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-18 Score=180.69 Aligned_cols=74 Identities=42% Similarity=0.692 Sum_probs=67.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhccCC
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL 84 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~~~~ 84 (579)
.+.||+||||+++||..+||+|||+||++|||||| |+ +.++|++|+.||+|||||.+|..||.+++..+.++.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 46799999999999999999999999999999999 43 789999999999999999999999999998885543
Q ss_pred C
Q 008064 85 N 85 (579)
Q Consensus 85 ~ 85 (579)
.
T Consensus 76 ~ 76 (337)
T KOG0712|consen 76 G 76 (337)
T ss_pred C
Confidence 3
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.6e-18 Score=180.87 Aligned_cols=72 Identities=43% Similarity=0.770 Sum_probs=65.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.+|||+||||+++||.++||+|||+||++||||++ ++ .++|.++|++|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 37999999999999999999999999999999998 32 34688999999999999999999999999987544
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=177.74 Aligned_cols=72 Identities=47% Similarity=0.745 Sum_probs=65.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.+|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|++|++||+||+||.+|+.||.++...+
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 47999999999999999999999999999999998 32 35688999999999999999999999999986543
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=178.44 Aligned_cols=69 Identities=42% Similarity=0.734 Sum_probs=63.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.+|||+||||+++||.++||+|||+||++||||+|. .+.|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-----APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 479999999999999999999999999999999982 145889999999999999999999999998764
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=178.21 Aligned_cols=70 Identities=37% Similarity=0.657 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.+|||+||||+++||..+||+|||+||++||||++ ++ .+.|.++|+.|++||+|||||.+|+.||.++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 47999999999999999999999999999999999 32 356899999999999999999999999999753
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=177.51 Aligned_cols=71 Identities=38% Similarity=0.602 Sum_probs=64.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.+|||+||||+++||.++||+|||+||++||||++. . ..|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK--E---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 479999999999999999999999999999999993 1 3578999999999999999999999999987544
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3e-17 Score=175.37 Aligned_cols=71 Identities=46% Similarity=0.742 Sum_probs=64.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
.+|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 47999999999999999999999999999999999 32 3468899999999999999999999999987643
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.6e-17 Score=176.02 Aligned_cols=72 Identities=42% Similarity=0.714 Sum_probs=65.0
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 3 ~~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
+..+|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 2 ~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-----EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-----ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 34579999999999999999999999999999999982 1457899999999999999999999999997643
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.4e-17 Score=175.32 Aligned_cols=72 Identities=46% Similarity=0.774 Sum_probs=65.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
..|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 37999999999999999999999999999999999 32 34688999999999999999999999999986543
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.1e-17 Score=174.07 Aligned_cols=71 Identities=44% Similarity=0.756 Sum_probs=64.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.+|||+||||+++||.++||+|||+||++||||++ ++ ....|.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 57999999999999999999999999999999999 32 2346899999999999999999999999998764
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.1e-17 Score=174.86 Aligned_cols=71 Identities=45% Similarity=0.782 Sum_probs=64.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
.+|||+||||+++||..+||+|||+||++||||++ ++ .+.|.+.|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 57999999999999999999999999999999999 32 2468899999999999999999999999987643
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.3e-17 Score=174.88 Aligned_cols=75 Identities=44% Similarity=0.765 Sum_probs=66.7
Q ss_pred CCCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 1 m~~~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
|+. .+|||+||||+++||.++||+|||+||++||||++ ++ ...|+++|++|++||+||+||.+|+.||.++...+
T Consensus 1 ~~~-~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 1 MAA-KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCC-CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 443 47999999999999999999999999999999999 32 34688999999999999999999999999986543
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.6e-17 Score=174.82 Aligned_cols=72 Identities=43% Similarity=0.685 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhh----ccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs----~r~~~l 80 (579)
..|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||. ++...+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN--KG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 35999999999999999999999999999999998 32 24689999999999999999999999998 765443
No 20
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6.3e-17 Score=167.57 Aligned_cols=69 Identities=41% Similarity=0.659 Sum_probs=63.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
..|||+||||+++||.++||+|||+||++||||++. ...+.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 479999999999999999999999999999999992 245889999999999999999999999998764
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6e-17 Score=172.83 Aligned_cols=70 Identities=50% Similarity=0.832 Sum_probs=64.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.+|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 47999999999999999999999999999999998 32 245889999999999999999999999998764
No 22
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.9e-17 Score=173.39 Aligned_cols=68 Identities=41% Similarity=0.646 Sum_probs=63.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
+|||+||||+++||.++||+|||+||++||||++ + .+.|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 7999999999999999999999999999999999 3 246889999999999999999999999998753
No 23
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.68 E-value=3.8e-17 Score=176.91 Aligned_cols=67 Identities=51% Similarity=0.830 Sum_probs=61.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
.+|||+||||+++||..+||+|||+||++||||++ + ..++|++|++||+|||||.+|+.||.++...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c------hHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 46999999999999999999999999999999998 2 1379999999999999999999999987643
No 24
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6.6e-17 Score=172.89 Aligned_cols=71 Identities=45% Similarity=0.660 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.+|||+||||+++||.++||+|||+||++||||++.. +.|.++|++|++||+||+||.+|+.||.++...+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-----EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 3799999999999999999999999999999999831 3488999999999999999999999999876543
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=7.7e-17 Score=172.70 Aligned_cols=70 Identities=41% Similarity=0.724 Sum_probs=64.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
++|||+||||+++||.++||+|||+||++||||+| +. +.|.++|+.|++||+||+||.+|+.||.++...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFN--KN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 47999999999999999999999999999999999 32 457899999999999999999999999987643
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=6.9e-17 Score=172.86 Aligned_cols=73 Identities=42% Similarity=0.642 Sum_probs=66.2
Q ss_pred CCCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 1 m~~~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
|+. .+|||+||||+++||..+||+|||+||++||||+| +. +.|.++|++|++||+||+||.+|+.||.++...
T Consensus 1 ~~~-~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 1 MAE-KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred CCC-cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 454 68999999999999999999999999999999998 22 468999999999999999999999999988654
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.6e-16 Score=171.17 Aligned_cols=72 Identities=46% Similarity=0.707 Sum_probs=65.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
..|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 37999999999999999999999999999999999 32 24588999999999999999999999999876543
No 28
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.65 E-value=9.5e-17 Score=183.39 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=65.4
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
+.++||+||||+++||..+||+|||+||++||||++ ++ . .|..+|+.|++||+|||||.+|++||.+|..++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~-~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG-N--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC-c--hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 568999999999999999999999999999999999 43 2 478899999999999999999999999986543
No 29
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.8e-16 Score=168.89 Aligned_cols=71 Identities=44% Similarity=0.682 Sum_probs=64.7
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 3899999999999999999999999999999999 32 34688999999999999999999999999987544
No 30
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.64 E-value=3.1e-16 Score=166.30 Aligned_cols=69 Identities=45% Similarity=0.739 Sum_probs=63.0
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
|||+||||+++||.++||+|||+||++||||++. ...+.++|+.|++||+||+||.+|+.||.++...+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999999999999999999999999993 23578999999999999999999999999876543
No 31
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=5.6e-16 Score=165.54 Aligned_cols=69 Identities=36% Similarity=0.613 Sum_probs=63.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
+|||+||||+++||.++||+|||+||++||||++. . ..+.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD--A---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 69999999999999999999999999999999983 1 347889999999999999999999999987643
No 32
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3e-16 Score=167.34 Aligned_cols=76 Identities=42% Similarity=0.613 Sum_probs=70.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~ 81 (579)
..+||.+|+|+++||.++|++|||++++.|||||+..| +....|++.|+.|+.||+|||||++|+.||.+|.++|.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp-d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP-DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh-hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 35899999999999999999999999999999999644 35678999999999999999999999999999999887
No 33
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.62 E-value=4.9e-16 Score=125.08 Aligned_cols=64 Identities=45% Similarity=0.779 Sum_probs=59.1
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhh
Q 008064 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD 73 (579)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YD 73 (579)
|||+||||+++++..+|+++|++|++.||||++... ...+...|..|+.||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~---~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD---EAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST---HHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh---hhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 589999999999999999999999999999998322 2578999999999999999999999998
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.60 E-value=1.3e-15 Score=158.87 Aligned_cols=68 Identities=35% Similarity=0.595 Sum_probs=62.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
..|||+||||+++||.++||+|||+||++||||++. ...+.++|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-----~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-----EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 369999999999999999999999999999999983 13588999999999999999999999999753
No 35
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.7e-16 Score=152.76 Aligned_cols=72 Identities=51% Similarity=0.775 Sum_probs=65.9
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
..+|+|+||||.++||..+|++||++|||+||||++ +-....+|+..|+.|+.||.||||.++|+.||..|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 456999999999999999999999999999999999 334566899999999999999999999999999754
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.4e-16 Score=158.55 Aligned_cols=70 Identities=49% Similarity=0.732 Sum_probs=65.0
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
..|||.||||+.+||..+|++|||+.||+|||||| |+. +.|.+.|+.|.+||+||+||..|+.||..|..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~d--P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PGD--PQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 78999999999999999999999999999999999 652 34999999999999999999999999998753
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.2e-15 Score=162.52 Aligned_cols=70 Identities=39% Similarity=0.743 Sum_probs=64.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.|||+||||+++||..+||+|||+||++||||++ +. ....|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999999999999999999999998 32 3346899999999999999999999999998764
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=154.32 Aligned_cols=71 Identities=51% Similarity=0.745 Sum_probs=64.6
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
.++|+||||+++|+.++||+|||+|+++||||++ + +.++++.+|+.|+.||.||+||.+|..||..+.-.+
T Consensus 31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~--g--d~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKN--G--DNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcC--C--CCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 4699999999999999999999999999999999 2 236799999999999999999999999999876443
No 39
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2e-15 Score=161.98 Aligned_cols=71 Identities=51% Similarity=0.775 Sum_probs=64.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
.+|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|+.|++||+||+||.+|+.||.++...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 58999999999999999999999999999999999 32 3468999999999999999999999999987643
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=3e-15 Score=155.56 Aligned_cols=74 Identities=36% Similarity=0.639 Sum_probs=65.5
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 3 ~~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
+.+||||.||||.++|+..+|.+|||+||++||||-.+.. .....|..+|.-|..|-+||+||.+|+.||..-.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdE-eEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDE-EEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCH-HHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 3579999999999999999999999999999999999421 1345699999999999999999999999998543
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.7e-15 Score=158.36 Aligned_cols=68 Identities=43% Similarity=0.715 Sum_probs=62.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 48999999999999999999999999999999992 245889999999999999999999999998764
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.8e-15 Score=158.49 Aligned_cols=69 Identities=41% Similarity=0.703 Sum_probs=63.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
..|||+||||+++||..+||+|||+||++||||++.. ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-----PGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 3699999999999999999999999999999999832 34789999999999999999999999998764
No 43
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.5e-15 Score=152.04 Aligned_cols=69 Identities=42% Similarity=0.639 Sum_probs=63.6
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
.+.|||+||||+++||..|||+||++||++||||.|.. ..|.++|+.|.+||+||+|+.+|..||..+.
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-----~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-----KEASKKFKEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cchhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 44599999999999999999999999999999999932 3799999999999999999999999999864
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.50 E-value=3.3e-14 Score=112.59 Aligned_cols=59 Identities=51% Similarity=0.837 Sum_probs=53.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChh
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~ 67 (579)
++||+||||+++++..+|+++|++|++.||||++. +. ...+...|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~--~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP--GD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999993 21 5678999999999999999985
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.2e-14 Score=134.52 Aligned_cols=73 Identities=44% Similarity=0.695 Sum_probs=65.4
Q ss_pred CCCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 008064 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (579)
Q Consensus 1 m~~~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r 76 (579)
|+....+||+||||+++|+..+|++|||++|++||||++. +... .+.+.|+.|++||.||+||..|+.||..+
T Consensus 1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~--~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNP--GDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC--Cchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 5667789999999999999999999999999999999993 2222 58999999999999999999999999864
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.46 E-value=1.1e-13 Score=107.68 Aligned_cols=55 Identities=47% Similarity=0.770 Sum_probs=50.7
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCC
Q 008064 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (579)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsD 65 (579)
+||+||||+++++.++|+++||+|+++||||++. +. ..+...|..|+.||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc--HHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999993 21 6789999999999999986
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.41 E-value=2.3e-13 Score=153.17 Aligned_cols=70 Identities=41% Similarity=0.653 Sum_probs=63.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~ 79 (579)
++|||+||||+++|+..+||+|||+||++||||++. + ..+..+|+.|+.||++|+||.+|+.||.++...
T Consensus 1 k~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 369999999999999999999999999999999983 2 457889999999999999999999999987643
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.37 E-value=3e-13 Score=128.03 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=59.6
Q ss_pred ccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 008064 5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (579)
Q Consensus 5 ~~d~YevLGV~~~A--s~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~ 78 (579)
.+.+|+||||+++| |..+||+|||++|+++|||++ + ..++|+.|+.||++|+|+..|..||.++..
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 34689999999999 999999999999999999997 2 246999999999999999999999998753
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=9.6e-13 Score=126.37 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=60.0
Q ss_pred ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 008064 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (579)
Q Consensus 5 ~~d~YevLGV~~~--As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r 76 (579)
+.|||+||||++. ++..+|+++||+|+++||||++... .....+...|..|++||.||+||.+|+.|+-..
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~-~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTL-QEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 3689999999996 7899999999999999999998421 122345678999999999999999999998753
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.7e-13 Score=139.94 Aligned_cols=69 Identities=48% Similarity=0.826 Sum_probs=64.4
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
...|||.||||.++|+..+|++|||++||.||||++ .+ +..++..+|+.|-+||.||+||.+|..||+.
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 457999999999999999999999999999999999 44 4688999999999999999999999999984
No 51
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-12 Score=130.29 Aligned_cols=73 Identities=42% Similarity=0.722 Sum_probs=64.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l 80 (579)
+.|||.||||.++|+..+|++||++||++||||++ ++. ...+..+|.+|.+||+||+||.+|..||.++...+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 56899999999999999999999999999999998 443 44566699999999999999999999999976433
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=2.5e-12 Score=124.06 Aligned_cols=70 Identities=29% Similarity=0.382 Sum_probs=59.5
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 6 ~d~YevLGV~~~--As~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
.|||+||||++. ++..+|+++||+|+++||||+....+. ....+.+.|..|++||.||+||.+|+.|+-.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 389999999995 678999999999999999999843221 2224778999999999999999999999964
No 53
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.1e-12 Score=127.05 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=62.9
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
..-|+|+||||+++||..+||+|||+|+++|||||+..+ ....+.|..|.+||..|+|+..|..|-.+|.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 345899999999999999999999999999999999332 4567899999999999999999999999865
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=4.2e-12 Score=123.01 Aligned_cols=75 Identities=29% Similarity=0.429 Sum_probs=62.3
Q ss_pred CCCCccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 1 m~~~~~d~YevLGV~~~--As~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
|-+...|||+||||++. ++..+|+++||+|+++||||++...+. ....+.+.+..|+.||.+|+||.+|+.|+..
T Consensus 1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 45677899999999995 688999999999999999999842211 1223567789999999999999999999974
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=1.8e-11 Score=118.38 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=61.5
Q ss_pred CccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 008064 4 EKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (579)
Q Consensus 4 ~~~d~YevLGV~~~--As~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r 76 (579)
...+||++|||++. .+..+|+++||+|+++||||++...+. ....+...|..|+.||.||+||.+|+.|+-..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 35789999999996 678999999999999999999843211 12347789999999999999999999999753
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.4e-11 Score=130.29 Aligned_cols=66 Identities=33% Similarity=0.562 Sum_probs=62.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
.+|+|.||||+.++|+++||+.||++|...||||| ..+.|.+.|+.|+.||+||+|+.+|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn-----~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKN-----MIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCcc-----CChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 57999999999999999999999999999999999 3567999999999999999999999999984
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.6e-11 Score=119.91 Aligned_cols=66 Identities=36% Similarity=0.635 Sum_probs=60.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
..|.|+||||.+.|+..+|.+|||+||++||||++.. +++...|..|..||++|.|...|..||-.
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 3578999999999999999999999999999999932 34569999999999999999999999975
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.08 E-value=1.2e-10 Score=119.73 Aligned_cols=60 Identities=40% Similarity=0.632 Sum_probs=52.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHHHhcCC
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSD 65 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~---~~~a~~~F~~I~~AYevLsD 65 (579)
.++|+||||++++|.++||+|||+|+++||||++...+.+ .+.++++|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998543332 35689999999999999974
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.00 E-value=2.8e-10 Score=103.17 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=46.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcC
Q 008064 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (579)
Q Consensus 5 ~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLs 64 (579)
..++|+||||+++||.++|+++||+|++++|||+. | ....|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999986 2 2468899999999995
No 60
>PHA02624 large T antigen; Provisional
Probab=98.91 E-value=7.9e-10 Score=123.72 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=55.6
Q ss_pred ccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhh
Q 008064 5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72 (579)
Q Consensus 5 ~~d~YevLGV~~~A--s~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~Y 72 (579)
.+++|+||||+++| +..+||+|||++|++||||++ | +.+.|+.|+.||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45799999999999 999999999999999999997 2 257999999999999999999998
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.89 E-value=2.1e-09 Score=115.02 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=64.8
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCC-CCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 4 ~~~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~-g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
..-|+|+||||+.+++..+||++||+|+.++||||..+- +....+-.+.+..|++||..|+|...|..|-.+|.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 345899999999999999999999999999999998321 23456789999999999999999999999998864
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.86 E-value=3.8e-09 Score=102.31 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=60.3
Q ss_pred ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 5 ~~d~YevLGV~~~--As~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
+.|||++|||++. .+...|+++|+.|...+|||+....+. ....+.+....|++||.+|.||-+|+.|=-.
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 3689999999985 899999999999999999999843321 1234677889999999999999999999865
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.69 E-value=2.9e-08 Score=94.69 Aligned_cols=60 Identities=33% Similarity=0.397 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 008064 18 CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (579)
Q Consensus 18 As~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~ 77 (579)
.+..+|+++||+|+++||||+....+. ....+...|..|++||.+|+||.+|+.|+-...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 477899999999999999999743221 233478899999999999999999999998643
No 64
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.1e-08 Score=101.68 Aligned_cols=182 Identities=21% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhccCCCCCCCCCCCCCc
Q 008064 17 ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNL 96 (579)
Q Consensus 17 ~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~r~~~l~~~~~~~~~~~~~~~~ 96 (579)
.++...|..+|+..++.+||++...-....-...+.|++|.+||.||++...|..+|.+.. +.. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~-~~~----------~l--- 68 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK-FAE----------AL--- 68 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH-HHh----------cC---
Confidence 3577889999999999999999821000112356789999999999999777778888741 110 00
Q ss_pred ccCCCCCCCCCCCCCCCcccchhhhHHHHhhhhHHHHHHhhcCCccccccCCcCCCCCCCcchhhhhhhhhhcceeeecc
Q 008064 97 YSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDF 176 (579)
Q Consensus 97 ~~~F~~s~f~g~~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~~~~~~~P~fG~~~s~~e~V~~FY~~W~~F~T~r~F 176 (579)
.++......|+..++..|.... .+....++|.+|..+.+...|..||.+|..|.+|+.|
T Consensus 69 ---------~~~~~~~~~~~~~~~~~~~v~~------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y 127 (335)
T KOG0724|consen 69 ---------PLEKRLEDKIEEYIGLVFDVNI------------RESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQY 127 (335)
T ss_pred ---------ccccccchhHHhhhhhHHHHhh------------hhccCCCccccCccccccccccccCCccccccccccC
Confidence 1111122334444445554321 1233557899999887777889999999999999999
Q ss_pred ccccccccCCCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 008064 177 CWVDEYDVMAGPNRKSRRVM-----EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMM 233 (579)
Q Consensus 177 ~w~deyd~~~a~nR~~RR~m-----EkENkK~R~k~kKE~n~~VR~LV~~vkkrDpRv~~~~ 233 (579)
...++.+.....+|..+|++ .+.|...+.+.+......++.||..+...|+++.-.-
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (335)
T KOG0724|consen 128 PQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWRK 189 (335)
T ss_pred CCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhccccccccee
Confidence 99988766666889999999 5899999999999999999999999999999997543
No 65
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.8e-08 Score=94.49 Aligned_cols=66 Identities=30% Similarity=0.465 Sum_probs=59.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCChhhhhhhhh
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS 74 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsDp~kR~~YDs 74 (579)
-++|+||.|.+..+.++||+.||+|++..||||| +. +.+.|...|-.|.+||.+|-|+..|..-+.
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4799999999999999999999999999999999 43 567899999999999999999997765443
No 66
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.51 E-value=4.3e-08 Score=66.70 Aligned_cols=26 Identities=58% Similarity=0.957 Sum_probs=25.4
Q ss_pred cccccccccccChHHHHHhHhhHHHH
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQSKKHK 324 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkKHk 324 (579)
|||++|+|.|.++.+|.+|++||+||
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 79999999999999999999999997
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.15 E-value=1.2e-06 Score=62.33 Aligned_cols=32 Identities=41% Similarity=0.735 Sum_probs=30.2
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHHH
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD 329 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~ 329 (579)
.|+|.+|++.|.+..+|.+|++|++|++++++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 58999999999999999999999999999875
No 68
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.05 E-value=2.5e-06 Score=56.56 Aligned_cols=25 Identities=52% Similarity=0.991 Sum_probs=24.4
Q ss_pred cccccccccccChHHHHHhHhhHHH
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQSKKH 323 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkKH 323 (579)
|+|.+|++.|.+..+|..|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 6899999999999999999999999
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.9e-05 Score=77.83 Aligned_cols=53 Identities=34% Similarity=0.585 Sum_probs=47.7
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHH-hcC
Q 008064 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLS 64 (579)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYe-vLs 64 (579)
.+|.||||...|+.++++.||..||+.+|||.. +.+...+.|++|.+||. ||+
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999998 33456789999999998 776
No 70
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.5e-05 Score=89.69 Aligned_cols=53 Identities=36% Similarity=0.484 Sum_probs=45.1
Q ss_pred ccCcccccCcCCC----CCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcC
Q 008064 5 KRCLYEVLGLRKE----CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (579)
Q Consensus 5 ~~d~YevLGV~~~----As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLs 64 (579)
--+-|+||.|+-+ -....||++|+|||.+|||||| | +..++|..+++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence 3467999999862 3347899999999999999999 3 46789999999999998
No 71
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=97.65 E-value=2.1e-05 Score=71.61 Aligned_cols=37 Identities=38% Similarity=0.770 Sum_probs=34.8
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 332 (579)
...|||..|.+.|.+.++++.|.++|.||++|+.|+.
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~ 91 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE 91 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence 4679999999999999999999999999999999984
No 72
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=97.60 E-value=3.9e-05 Score=81.64 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=35.3
Q ss_pred hccCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 008064 294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (579)
Q Consensus 294 ~~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 332 (579)
+....+||.+|+|.|.|.+++.+|++||+|+.++.++.+
T Consensus 64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 345678999999999999999999999999999998776
No 73
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00083 Score=60.21 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=41.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcCC
Q 008064 10 EVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (579)
Q Consensus 10 evLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLsD 65 (579)
-||||.++++.+.||.|+||+-+..|||+...| -.-..|++|+++|..
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEG 107 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhc
Confidence 589999999999999999999999999998432 344569999999974
No 74
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=96.57 E-value=0.00094 Score=59.72 Aligned_cols=38 Identities=34% Similarity=0.712 Sum_probs=35.2
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 333 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~ 333 (579)
...+||..|.+.|.++.++..|.++|-|++.++.|+..
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev 90 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV 90 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence 35789999999999999999999999999999999864
No 75
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=96.41 E-value=0.0024 Score=47.28 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=20.6
Q ss_pred cccccccccccc--ChHHHHHhHhhHHHHHHHHH
Q 008064 298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVAD 329 (579)
Q Consensus 298 ~~~C~~C~K~F~--s~~~~~nH~~SkKHk~~~~~ 329 (579)
-+||..|++.|. +.....+|+.+.+|+.++++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 379999999994 44567999999999999975
No 76
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.004 Score=59.41 Aligned_cols=73 Identities=26% Similarity=0.445 Sum_probs=57.5
Q ss_pred CCccCcccccCcCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 3 SEKRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 3 ~~~~d~YevLGV~~--~As~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
....+||.++|... ...++-+..-|.-...++|||+...+.. ....|.+....|++||.+|.||-.|+.|=..
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34568999998764 4566667768999999999999643311 2336889999999999999999999999764
No 77
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.31 E-value=0.021 Score=63.42 Aligned_cols=49 Identities=37% Similarity=0.501 Sum_probs=36.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchH---HHHHHHHHHHHHHHh
Q 008064 14 LRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEV 62 (579)
Q Consensus 14 V~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~---~a~~~F~~I~~AYev 62 (579)
|..-.+...||++|||.+|..||||.+..|.+.. -|.+.|-.+++|+..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4445789999999999999999999976654332 256666666666653
No 78
>PLN02748 tRNA dimethylallyltransferase
Probab=95.30 E-value=0.013 Score=65.28 Aligned_cols=38 Identities=24% Similarity=0.783 Sum_probs=34.0
Q ss_pred cCccccccccc-cccChHHHHHhHhhHHHHHHHHHHHHH
Q 008064 296 RSEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRES 333 (579)
Q Consensus 296 ~~~~~C~~C~K-~F~s~~~~~nH~~SkKHk~~~~~l~~~ 333 (579)
...|+|.+|++ +|..+.+|.-|++|++|+++++.++++
T Consensus 416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~ 454 (468)
T PLN02748 416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK 454 (468)
T ss_pred cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence 34567999997 899999999999999999999988764
No 79
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.15 E-value=0.014 Score=37.59 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=20.5
Q ss_pred cccccccccccChHHHHHhHhh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (579)
|.|..|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5699999999999999999986
No 80
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.016 Score=56.22 Aligned_cols=58 Identities=34% Similarity=0.569 Sum_probs=49.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCc---hHHHHHHHHHHHHHHHhc
Q 008064 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVL 63 (579)
Q Consensus 6 ~d~YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~---~~~a~~~F~~I~~AYevL 63 (579)
.+.|.+||+...++..+|+++|+++...+|||+-...+.. ...+.+.++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999997544432 235789999999999753
No 81
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.075 Score=58.55 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=70.5
Q ss_pred cCCcCCCCCCCcchhhhhhhhhhcceeeeccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008064 146 EAPIMGNLESPYGQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKR 225 (579)
Q Consensus 146 ~~P~fG~~~s~~e~V~~FY~~W~~F~T~r~F~w~deyd~~~a~nR~~RR~mEkENkK~R~k~kKE~n~~VR~LV~~vkkr 225 (579)
.+|.+| +..||..|.+|+|.--|.|. .|...-...+..++.|...+..++....+.-+..|++++.+++++
T Consensus 127 e~~~~~--------d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ 197 (508)
T KOG0717|consen 127 ELPFLG--------DSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQY 197 (508)
T ss_pred hhhhcc--------CCccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 466666 45799999999999999999 888889999999999999999999999999999999999999999
Q ss_pred ChhhHH
Q 008064 226 DKRVMD 231 (579)
Q Consensus 226 DpRv~~ 231 (579)
+.|+..
T Consensus 198 ak~eyN 203 (508)
T KOG0717|consen 198 ARQEYN 203 (508)
T ss_pred HHHHHH
Confidence 999765
No 82
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=94.72 E-value=0.019 Score=55.47 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=32.4
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 331 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~ 331 (579)
..-|||.+|+=+|+---+|..|++.|+|..++..+-
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm 108 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM 108 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence 356899999999999999999999999999987553
No 83
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.67 E-value=0.04 Score=36.90 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.8
Q ss_pred ccccccccccccChHHHHHhHhh
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (579)
.|.|..|++.|.+..+|..|.++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 36899999999999999999864
No 84
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=93.67 E-value=0.045 Score=34.76 Aligned_cols=22 Identities=36% Similarity=0.922 Sum_probs=18.3
Q ss_pred cccccccccccChHHHHHhHhh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (579)
|.|..|++.|.+..+|..|+.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 5799999999999999999875
No 85
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.051 Score=52.76 Aligned_cols=69 Identities=29% Similarity=0.398 Sum_probs=54.1
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCC-chHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 008064 7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (579)
Q Consensus 7 d~YevLGV~~~A--s~~eIKkAYRklalk~HPDK~~~~g~-~~~~a~~~F~~I~~AYevLsDp~kR~~YDs~ 75 (579)
+|+.++|+++.+ ..+.++..|+.+.+.+|||+....+. ....+...+..++.||.+|.+|-.|+.|=..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 466667777654 34568999999999999999865442 2223678999999999999999999999764
No 86
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=93.29 E-value=0.041 Score=58.56 Aligned_cols=37 Identities=30% Similarity=0.607 Sum_probs=33.4
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 332 (579)
..-+||+.|++-|+..+.|..|+.+|-|.+++...+.
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 3568999999999999999999999999999887655
No 87
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=92.15 E-value=0.053 Score=46.12 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=26.3
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHH
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~ 328 (579)
.+.|.+|++.|.+..++..|++++.|.....
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999999987644
No 88
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.13 Score=52.08 Aligned_cols=36 Identities=31% Similarity=0.689 Sum_probs=33.4
Q ss_pred ccCccccccccccccChHHHHHhHhhHHHHHHHHHHH
Q 008064 295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 331 (579)
Q Consensus 295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~ 331 (579)
..+.+.|.+|+--.+ .+-|+.|.+||+|+.+|..|+
T Consensus 32 ~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK 67 (264)
T KOG3032|consen 32 ESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK 67 (264)
T ss_pred CCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence 346689999999999 999999999999999999998
No 89
>smart00355 ZnF_C2H2 zinc finger.
Probab=90.70 E-value=0.2 Score=31.98 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.5
Q ss_pred cccccccccccChHHHHHhHh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQ 319 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~ 319 (579)
+.|..|++.|.+...+..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 469999999999999999987
No 90
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=89.83 E-value=0.089 Score=54.38 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=32.5
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 332 (579)
-|||..|.|.|..+|.|+-|..|--|.+.+..+..
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~ 59 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFAL 59 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHHh
Confidence 48999999999999999999999999999987764
No 91
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=89.22 E-value=0.22 Score=39.04 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=23.9
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHH
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~ 327 (579)
..-||..|.-.|.+ |..|+.|.+|+.=+
T Consensus 4 k~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 4 KPGYCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred CCccCccccchhhh---HHHHhCCHHHHHHH
Confidence 34599999999985 88999999998654
No 92
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=88.76 E-value=0.25 Score=38.78 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.6
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~ 328 (579)
...-||..|...|. -|..|+.|++|+.=..
T Consensus 3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE 32 (49)
T ss_pred CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence 34569999999997 5788999999986543
No 93
>PHA02768 hypothetical protein; Provisional
Probab=84.62 E-value=0.58 Score=37.61 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=22.3
Q ss_pred cccccccccccChHHHHHhHhhHHHH
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQSKKHK 324 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkKHk 324 (579)
|.|..|+|.|....+|..|.++ |.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~--H~ 29 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK--HN 29 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh--cC
Confidence 6899999999999999999988 65
No 94
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=80.31 E-value=1.7 Score=43.96 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=29.8
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~ 334 (579)
.-|-|..|.|.|+-..=+..|+. +||-+.|..+++++
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev 112 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEV 112 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHH
Confidence 45899999999999999999987 67999999888765
No 95
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=78.25 E-value=3.1 Score=38.88 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=34.5
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcC
Q 008064 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (579)
Q Consensus 9 YevLGV~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLs 64 (579)
..||+|++.++.++|.+.|.+|-...+|++. | ..-.=..|..|.+.|.
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---G-----SfYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---G-----SFYLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S------HHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---C-----CHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999987 2 2334455777888775
No 96
>PHA00616 hypothetical protein
Probab=78.23 E-value=1.1 Score=34.42 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.1
Q ss_pred cccccccccccChHHHHHhHhh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (579)
+-|.-|++.|....+|..|+++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 5799999999999999999954
No 97
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=75.90 E-value=2.8 Score=40.64 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=31.7
Q ss_pred cccccccccccc--ChHHHHHhHhhHHHHHHHHHHHHHhhhhh
Q 008064 298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVADLRESFVDED 338 (579)
Q Consensus 298 ~~~C~~C~K~F~--s~~~~~nH~~SkKHk~~~~~l~~~~~~e~ 338 (579)
-|||..|++.-. |-..-+.|+..+||+++|+-.=+++.++.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeq 45 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQ 45 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 379999996443 56678999999999999998766655433
No 98
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=70.15 E-value=3.1 Score=41.40 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=33.9
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~ 334 (579)
...|.|..|.-.-.|+..|..|...|||+.||++-....
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e 89 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKE 89 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHH
Confidence 356789999999999999999999999999988765443
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.02 E-value=27 Score=41.50 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH
Q 008064 192 SRRVMEEENKKLR-KKAKREYN 212 (579)
Q Consensus 192 ~RR~mEkENkK~R-~k~kKE~n 212 (579)
-|+.|+.+.+|.| ..++||+.
T Consensus 332 RRq~leeqqqreree~eqkEre 353 (1118)
T KOG1029|consen 332 RRQALEEQQQREREEVEQKERE 353 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555 33344433
No 100
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=69.93 E-value=3.7 Score=27.59 Aligned_cols=21 Identities=33% Similarity=0.828 Sum_probs=17.9
Q ss_pred cccccccccccChHHHHHhHhh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (579)
.-|..|++.| +..++..|++.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4699999999 88899999763
No 101
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=65.18 E-value=3.6 Score=40.61 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=31.8
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l 330 (579)
..-|.|..|.-.-.|+++|..|...|||+.++.+-
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 35688999999999999999999999999998754
No 102
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=52.51 E-value=5.2 Score=43.08 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=28.8
Q ss_pred hccCccccccccccccChHHHHHhHhhHHHHH
Q 008064 294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 325 (579)
Q Consensus 294 ~~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~ 325 (579)
+.-+-+.|-.|.|.|...+.+..|++-|.|++
T Consensus 191 ekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 191 EKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred HHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 44567899999999999999999999999985
No 103
>PF13446 RPT: A repeated domain in UCH-protein
Probab=51.91 E-value=26 Score=28.06 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.5
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHH
Q 008064 7 CLYEVLGLRKECTTDEIRSAYKKLAL 32 (579)
Q Consensus 7 d~YevLGV~~~As~~eIKkAYRklal 32 (579)
.-|.+|||+++++++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998776
No 104
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=50.84 E-value=6.6 Score=26.38 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=12.0
Q ss_pred CccccccccccccC
Q 008064 297 SEFYCVLCGKKFKS 310 (579)
Q Consensus 297 ~~~~C~~C~K~F~s 310 (579)
..|.|..|+|.|.+
T Consensus 13 k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 13 KPYKCPYCGKSFSN 26 (26)
T ss_dssp SSEEESSSSEEESS
T ss_pred CCCCCCCCcCeeCc
Confidence 45889999999975
No 105
>PHA00732 hypothetical protein
Probab=50.50 E-value=10 Score=32.50 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred cccccccccccChHHHHHhHhh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (579)
|-|..|++.|.+...+..|.+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 5799999999999999999763
No 106
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=46.98 E-value=1.7e+02 Score=30.04 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=13.2
Q ss_pred hcChhhHHHHHHhHHHHHH
Q 008064 224 KRDKRVMDMMVKKNEEIER 242 (579)
Q Consensus 224 krDpRv~~~~~~~~~e~e~ 242 (579)
.||||++.++.+...++.+
T Consensus 175 prdprF~eml~~kEkeeKK 193 (217)
T PF10147_consen 175 PRDPRFQEMLQEKEKEEKK 193 (217)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 7899999887755444433
No 107
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=46.73 E-value=4.8 Score=40.34 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.8
Q ss_pred ccCccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 008064 295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (579)
Q Consensus 295 ~~~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l 330 (579)
....|||.+|+..|. .+.+.||..|--|.-++..+
T Consensus 81 ~e~lfyCE~Cd~~ip-~~~~snH~tSttHllsl~~~ 115 (223)
T KOG2384|consen 81 DEALFYCEVCDIYIP-NSKKSNHFTSTTHLLSLQHI 115 (223)
T ss_pred CCccchhhhhhhhcc-CCCCccchhhHHHHhhhccC
Confidence 346789999987776 46789999999998776644
No 108
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=45.29 E-value=15 Score=24.95 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.2
Q ss_pred cccccccccccChHHHHHhHh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQ 319 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~ 319 (579)
.-|.+|++.+ +..+...|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3699999999 7788989986
No 109
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=45.17 E-value=19 Score=38.31 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=28.3
Q ss_pred CccccccccccccC-hHHHHHhHhhHHHHHHHHHHH
Q 008064 297 SEFYCVLCGKKFKS-EKQWTNHEQSKKHKEKVADLR 331 (579)
Q Consensus 297 ~~~~C~~C~K~F~s-~~~~~nH~~SkKHk~~~~~l~ 331 (579)
.-.||..|.--|++ ..+-.+|++.|+|+.+|++--
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kri 44 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRI 44 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHH
Confidence 44689999887764 457889999999999998643
No 110
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=45.10 E-value=36 Score=31.14 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcC
Q 008064 16 KECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (579)
Q Consensus 16 ~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLs 64 (579)
+..+..+++.|.|.+-++.|||.....+........-++.|+.-.+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 3456788999999999999999874332223334556666666666554
No 111
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=43.41 E-value=12 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.857 Sum_probs=21.9
Q ss_pred cCccccccccccccChHHHHHhHh
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQ 319 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~ 319 (579)
.+.|||.-|+-.|++.-.|..|+-
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCC
Confidence 578999999999999999999973
No 112
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=43.28 E-value=80 Score=31.74 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=13.7
Q ss_pred HhcChhhHHHHHHhHHHHHHH
Q 008064 223 KKRDKRVMDMMVKKNEEIERK 243 (579)
Q Consensus 223 kkrDpRv~~~~~~~~~e~e~k 243 (579)
--||||+..+++++..++.++
T Consensus 185 Dprd~RF~emLqqkEkeekK~ 205 (225)
T KOG4848|consen 185 DPRDPRFEEMLQQKEKEEKKA 205 (225)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 378999988776555444333
No 113
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=39.63 E-value=38 Score=34.96 Aligned_cols=18 Identities=39% Similarity=0.861 Sum_probs=14.3
Q ss_pred CccccccccccccChHHH
Q 008064 297 SEFYCVLCGKKFKSEKQW 314 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~ 314 (579)
-..||+.|+-.+...+++
T Consensus 83 ~~~~Cv~Cg~~i~~~~a~ 100 (236)
T PF12269_consen 83 LSIYCVTCGHEIPSKKAL 100 (236)
T ss_pred eeeeeeeCCCcCCHHHHH
Confidence 456999999988777665
No 114
>PTZ00448 hypothetical protein; Provisional
Probab=38.44 E-value=25 Score=38.41 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=32.3
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHHHHHHHH
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 333 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~ 333 (579)
..|-|..|+-.|.+...+..|.+|-=|+=|+++--..
T Consensus 313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~g 349 (373)
T PTZ00448 313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARK 349 (373)
T ss_pred CCccccccccccCCHHHHHHHhhhhHHHHHHHHHhcC
Confidence 3578999999999999999999999999998865443
No 115
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=38.36 E-value=9.4 Score=44.82 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=26.6
Q ss_pred CccccccccccccChHHHHHhHhhHHHH
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHK 324 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk 324 (579)
..|.|..|.|.|..-..|-.|+.|||-.
T Consensus 308 KPfeCpnCkKRFSHSGSySSHmSSKKCI 335 (1007)
T KOG3623|consen 308 KPFECPNCKKRFSHSGSYSSHMSSKKCI 335 (1007)
T ss_pred CCcCCcccccccccCCcccccccccchh
Confidence 5789999999999999999999999987
No 116
>PF14968 CCDC84: Coiled coil protein 84
Probab=37.77 E-value=18 Score=39.18 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=26.4
Q ss_pred ccccccccccChHHHHHhHhhHHHHHHHHHHHHH
Q 008064 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 333 (579)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~ 333 (579)
||.+|+..+-. ...|.=|.+|++++..+...
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~r 31 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSR 31 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHH
Confidence 89999987654 89999999999999877543
No 117
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=36.27 E-value=8.2 Score=27.03 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=14.5
Q ss_pred cccccccccccChHHHHHhH
Q 008064 299 FYCVLCGKKFKSEKQWTNHE 318 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~ 318 (579)
|-|+-|.+.| +-..|++|-
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 4699999999 777888874
No 118
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=34.83 E-value=17 Score=29.55 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=21.9
Q ss_pred CccccccccccccChHHHHHhHhhHHH
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQSKKH 323 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkKH 323 (579)
.-|-|.-|++.|.-.+.|..|.+ |-|
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVN-KaH 41 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVN-KAH 41 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhh-HHh
Confidence 34689999999999999999986 344
No 119
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=34.72 E-value=33 Score=33.49 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=30.9
Q ss_pred cccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 008064 299 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (579)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~~~ 334 (579)
|.|..|.=.=-.+..+..|+.|+=|++-+..+.-++
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl 36 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKL 36 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcC
Confidence 679999877778899999999999999998885443
No 120
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=34.40 E-value=14 Score=40.64 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=22.9
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHH
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEK 326 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SkKHk~~ 326 (579)
-.-||..|.-.|.+ |..|+.|++|++-
T Consensus 421 k~GYCENCreky~~---lE~Hi~s~~HrrF 447 (468)
T COG5067 421 KKGYCENCREKYES---LEQHIVSEKHRRF 447 (468)
T ss_pred ccchhHHHHHHHHH---HHHHhhhhhhhhh
Confidence 34699999999975 7899999999854
No 121
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=33.20 E-value=58 Score=32.53 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcCCCCCchHHHHHHHHHHHHHHHhcC
Q 008064 15 RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (579)
Q Consensus 15 ~~~As~~eIKkAYRklalk~HPDK~~~~g~~~~~a~~~F~~I~~AYevLs 64 (579)
+++||.+||..|+.++..+|--|.. .-..|-.||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~------------~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEK------------SREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHH------------HHHHHHHHHHHHH
Confidence 4689999999999999998844433 3345888998665
No 122
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=32.05 E-value=15 Score=30.86 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=0.0
Q ss_pred ccccccccccChHHHHHhHhhHHHHHHHH
Q 008064 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (579)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SkKHk~~~~ 328 (579)
.|..|+..|.+..++..|+. +.|.-.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~-~~H~~~~~ 28 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMK-KKHGFDIP 28 (100)
T ss_dssp -----------------------------
T ss_pred Cccccccccccccccccccc-cccccccc
Confidence 39999999999999999995 66765444
No 123
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=32.05 E-value=22 Score=42.56 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=21.2
Q ss_pred ccccccccccccChHHHHHhHhh
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (579)
-.+|.+|+|.|.+..+|+.|.+.
T Consensus 879 ~h~C~vCgk~FsSSsALqiH~rT 901 (958)
T KOG1074|consen 879 AHVCNVCGKQFSSSAALEIHMRT 901 (958)
T ss_pred hhhhccchhcccchHHHHHhhhc
Confidence 35899999999999999999986
No 124
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=31.20 E-value=40 Score=26.33 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=18.0
Q ss_pred ccccccccccccChHHHHHhHhh
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (579)
.|-|..|++ -.+...|..|...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCED 23 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHh
Confidence 478999999 5678899999765
No 125
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=31.20 E-value=26 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=15.9
Q ss_pred cCccccccccccccCh----HHHHHhHh
Q 008064 296 RSEFYCVLCGKKFKSE----KQWTNHEQ 319 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~----~~~~nH~~ 319 (579)
.....|..|++.|+.. +.|..|++
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 3456899999999874 88999983
No 126
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=30.33 E-value=17 Score=32.57 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=0.0
Q ss_pred chhhHHHH
Q 008064 413 ADDEVNML 420 (579)
Q Consensus 413 ~~de~~il 420 (579)
+++++|++
T Consensus 37 e~de~p~p 44 (101)
T PF09026_consen 37 EEDEVPVP 44 (101)
T ss_dssp --------
T ss_pred ccccccch
Confidence 34466655
No 127
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=28.94 E-value=42 Score=36.84 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=30.9
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 332 (579)
.|.|..|+..|.+.-.-..|-+|-=|+=||++--.
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA 37 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVA 37 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhh
Confidence 47899999999999999999999999988875433
No 128
>PHA00733 hypothetical protein
Probab=28.72 E-value=38 Score=31.46 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=20.7
Q ss_pred ccccccccccccChHHHHHhHhhHHH
Q 008064 298 EFYCVLCGKKFKSEKQWTNHEQSKKH 323 (579)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SkKH 323 (579)
.+-|..|+|.|.+...|..|.. ++|
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~-~~h 123 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVC-KKH 123 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHH-Hhc
Confidence 4789999999999999999964 444
No 129
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=27.85 E-value=32 Score=36.18 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.0
Q ss_pred cCccccccccccccChHHHHHhHhhHH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSKK 322 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SkK 322 (579)
...+.|..|+|.|-|+-+|.-|+++-.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~ 185 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT 185 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC
Confidence 567899999999999999999998754
No 130
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=27.51 E-value=1.2e+02 Score=34.03 Aligned_cols=16 Identities=6% Similarity=0.364 Sum_probs=7.1
Q ss_pred hhcceeeecccccccc
Q 008064 167 WLGFSTVMDFCWVDEY 182 (579)
Q Consensus 167 W~~F~T~r~F~w~dey 182 (579)
|.-..|+--+-+.+.+
T Consensus 261 wtl~Qq~i~~~~l~~~ 276 (429)
T PRK00247 261 WTLIQNIIMYLILERK 276 (429)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444455543
No 131
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=26.04 E-value=1.2e+02 Score=30.52 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=0.0
Q ss_pred Cccccccc-cccccChHHHHHhHhhHHHHHHHHHH
Q 008064 297 SEFYCVLC-GKKFKSEKQWTNHEQSKKHKEKVADL 330 (579)
Q Consensus 297 ~~~~C~~C-~K~F~s~~~~~nH~~SkKHk~~~~~l 330 (579)
-.|+|.+| +.+|+=.++|..|..--+|.--+.-|
T Consensus 100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL 134 (196)
T PF11931_consen 100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL 134 (196)
T ss_dssp -----------------------------------
T ss_pred CeeeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence 47899999 57788999999999999998776654
No 132
>PHA00733 hypothetical protein
Probab=24.74 E-value=47 Score=30.88 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.3
Q ss_pred CccccccccccccChHHHHHhHhh
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHEQS 320 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~S 320 (579)
..|.|..|++.|.+...|..|...
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc
Confidence 458899999999999999999874
No 133
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=24.45 E-value=4.4e+02 Score=32.94 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 008064 192 SRRVMEEEN 200 (579)
Q Consensus 192 ~RR~mEkEN 200 (579)
.|..+++++
T Consensus 436 ER~r~e~e~ 444 (1021)
T PTZ00266 436 ERARIEKEN 444 (1021)
T ss_pred HHHHHHHHH
Confidence 343444443
No 134
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=24.08 E-value=31 Score=41.33 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.7
Q ss_pred ccccccccccChHHHHHhHhhH
Q 008064 300 YCVLCGKKFKSEKQWTNHEQSK 321 (579)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~Sk 321 (579)
.|..|.|+|.|..+++.|++|-
T Consensus 355 kCr~CakvfgS~SaLqiHlRSH 376 (958)
T KOG1074|consen 355 KCRFCAKVFGSDSALQIHLRSH 376 (958)
T ss_pred hhhhhHhhcCchhhhhhhhhcc
Confidence 6999999999999999999983
No 135
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=21.84 E-value=53 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.8
Q ss_pred cCccccccccccccChHHHHHhHhhH
Q 008064 296 RSEFYCVLCGKKFKSEKQWTNHEQSK 321 (579)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~Sk 321 (579)
.+.||+..|+|.|.|..++..+|...
T Consensus 26 ~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 26 FDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred ceEEEECCCCCEEECHHHHHHHHHhC
Confidence 46789999999999999999988764
No 136
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.08 E-value=91 Score=24.34 Aligned_cols=30 Identities=37% Similarity=0.717 Sum_probs=15.6
Q ss_pred ccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 008064 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (579)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SkKHk~~~~~l~~ 332 (579)
-|++|+..|..+.. ..-.+++...+..+..
T Consensus 22 ~CPlC~r~l~~e~~---~~li~~~~~~i~~~~~ 51 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR---QELIKKYKSEIEELPE 51 (54)
T ss_dssp E-TTT--EE-HHHH---HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHH---HHHHHHHHHHHHhhhh
Confidence 79999999988765 3334444444444443
No 137
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.85 E-value=5.7e+02 Score=31.15 Aligned_cols=8 Identities=50% Similarity=1.070 Sum_probs=4.9
Q ss_pred hhhHHHHh
Q 008064 119 YSDLFNKI 126 (579)
Q Consensus 119 y~~vF~~i 126 (579)
|+.+|..+
T Consensus 197 Y~QlFNa~ 204 (1118)
T KOG1029|consen 197 YRQLFNAL 204 (1118)
T ss_pred HHHHhhhc
Confidence 66677643
No 138
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=20.61 E-value=52 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=19.2
Q ss_pred CccccccccccccChHHHHHhH
Q 008064 297 SEFYCVLCGKKFKSEKQWTNHE 318 (579)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~ 318 (579)
..+||.-|+-.|.+...|..|.
T Consensus 26 ~~~YC~~Cg~~Y~d~~dL~~~C 47 (55)
T PF13821_consen 26 EHNYCFWCGTKYDDEEDLERNC 47 (55)
T ss_pred hCceeeeeCCccCCHHHHHhCC
Confidence 5679999999999999998764
Done!