BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008065
         (579 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5XVA8|Y3905_ARATH Uncharacterized protein At3g49055 OS=Arabidopsis thaliana
           GN=At3g49055 PE=2 SV=1
          Length = 480

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 128/265 (48%), Gaps = 25/265 (9%)

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL D  +YV  + D++  +I+ +++ N+           P+E +    +       +SI 
Sbjct: 110 LLSDIADYVRSMEDRLSKLIRCLNEENV-----------PEE-ERGRKLETKEYNSKSIL 157

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK-TN 412
           +L + VV K     +   ++   L+ +V  L +E   I  LLR+AL ++ + +   K  N
Sbjct: 158 ELVKEVVTKLETFQESTKKKKMELSRSVEFLEEENRDINVLLRAALFEKQTAEKQLKEMN 217

Query: 413 E-----LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           +     L ++A  GL+  G  F   +      V  S +  N    EE+    +  A+E  
Sbjct: 218 DQKGLALLQIAGRGLQRIGFGFGLGE-----SVEESSETGNIANEEEEN--GVVIAIEKT 270

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527
           +K  + E+ +L+ S+EE R E   L++  E QA++L+     I +L+ +E+   ++VE L
Sbjct: 271 MKKLRQEVSQLKISLEESRLEEVGLRKVTEEQAQKLAENTVYINKLQNQEKFLAQNVEEL 330

Query: 528 MLDIAAAEEEISRWKAAAEQEAAAG 552
           +  I  AE E+SRW+ A E E  AG
Sbjct: 331 VKAIREAESEVSRWREACELEVEAG 355


>sp|Q8S2T0|GRIP_ARATH Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2
          Length = 788

 Score = 42.0 bits (97), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 43/267 (16%)

Query: 16  EIDV--QTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKR 73
           EIDV  QT    + ++E  RE  +E          A+  + E S KF++++    + IK 
Sbjct: 97  EIDVEKQTRVAAEQALEHLREAYSE----------ADAKSQEYSSKFSQVEQKLDQEIKE 146

Query: 74  RDES--------TRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDG 125
           RDE         TR    A +  +EI +  D L     EVN   +    Q   + +  + 
Sbjct: 147 RDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELER 206

Query: 126 SRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAV 185
           +R Q +E  KA D  R ++ ++ + L   IE++ G +           P+  K   L   
Sbjct: 207 TRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQ----------PKENKIETLQQS 256

Query: 186 VYGVIKRTNEIVEELVGQIDATAKSRNDVREQM---EQRNFEIAIEVSELEATISGLREE 242
           +       ++I+E+L  Q+ A  + +     ++    Q+N E       LEA +     E
Sbjct: 257 LLD----KDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLEG------LEAQVVDALSE 306

Query: 243 VAKKSSFIENLEKSLIEKDEKVAEIES 269
             K +  I +L+  L EK+ K+AE+E+
Sbjct: 307 RDKAAETISSLQVLLAEKESKIAEMEA 333


>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2
          Length = 3210

 Score = 37.4 bits (85), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505
           E   +ASQ++  ELR S+EE++ E++LLK H E +A+E+ H
Sbjct: 464 EQAFQASQIKENELRRSMEEMKKENNLLKSHSEQKAREVCH 504


>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1
          Length = 1959

 Score = 32.7 bits (73), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 12/138 (8%)

Query: 10   LSDVEGEID--VQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALA 67
            L D+  ++D   QT S+ +   ++F ++LAE           +N + + +E+ +R +A A
Sbjct: 1422 LDDIAVDLDHQRQTVSNLEKKQKKFDQLLAE----------EKNISAKYAEERDRAEAEA 1471

Query: 68   HESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSR 127
             E   +     R  +EA+ +K E+ R N +  TE+ ++  +KD+V K + E+ KA+    
Sbjct: 1472 REKETKALSLARALEEAIEQKAELERVNKQFRTEMEDLMSSKDDVGKSVHELEKAKRALE 1531

Query: 128  SQLDEVTKAKDGLRSEIE 145
             Q++E+    + L  E++
Sbjct: 1532 QQVEEMKTQLEELEDELQ 1549


>sp|P0CK98|CCD39_DANRE Coiled-coil domain-containing protein 39 (Fragment) OS=Danio rerio
           GN=ccdc39 PE=2 SV=1
          Length = 604

 Score = 32.7 bits (73), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 171/388 (44%), Gaps = 81/388 (20%)

Query: 198 EELVGQIDATAKSRNDVREQMEQRNFEI---AIEVSELEATISGLREEVAKKSSFIENLE 254
           +EL+ Q + T        EQM +R+ +I   A+ ++EL  TI    + + ++  F+E   
Sbjct: 221 QELISQWENTI-------EQMRKRDQDIQQCAMMLAELNQTIREKNDLIKERKDFLEREI 273

Query: 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLL---VDQL--------NYVS 303
           ++  E +  +  +E Q   LRQ + E E   + L+    +L   VD+         + +S
Sbjct: 274 ENNKELERNIGTVERQAFRLRQQLQEEEKNQRRLQDEVEVLKGTVDRTATDVETSRSQLS 333

Query: 304 KIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVE-- 361
            +   + D    V++  L  + L E L +  E        A L G E   Q+ +++ E  
Sbjct: 334 SMKKDIQDKTTKVEEAQLHNAALEEKLRMVTE--------AVLNGEEQAAQMEQLLREQE 385

Query: 362 -----------KTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK 410
                      + ++L+ KKS+EV++L +    +  E    +   R+ALS   ++D    
Sbjct: 386 QNIKEIDSQLLRQKELLFKKSQEVQALRDKEKNVTAE----ICATRTALS---NLDS--- 435

Query: 411 TNELFKVAENGLREAGI----DFKFS-----KLLSDGKVPVSDDKANAMETEEDEIYNLA 461
             +L K+ +N L++  I    DF+        L   GKV   + KA      E ++ +LA
Sbjct: 436 --KLRKLDQNFLQQQMIISNQDFQIQMLERKTLHLQGKVNTEEKKA-----LEKKVADLA 488

Query: 462 GALENIVKASQLEIVELRHSVEELRAESSLLK---EHLEAQAKELSHRMKRIE---ELEE 515
            +LE   K +      L   +++L+ +   +K   E + A+   LS +++ +E   E  E
Sbjct: 489 ASLEEKKKTA----ANLNKQLKKLQDDIRCIKKDTEKIGAEKTNLSTKIQEVELFIETSE 544

Query: 516 KERIAN---ESVEGLMLDIAAAEEEISR 540
           KER  +   + V  L   +AA  E +S+
Sbjct: 545 KERKKSRLKKQVNDLTSTLAAVNEAMSK 572


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.127    0.323 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,677,869
Number of Sequences: 539616
Number of extensions: 7837360
Number of successful extensions: 59718
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 2663
Number of HSP's that attempted gapping in prelim test: 45647
Number of HSP's gapped (non-prelim): 10591
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)