Query 008065
Match_columns 579
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 19:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00606 rad50 rad50. This fa 98.0 0.068 1.5E-06 63.3 44.4 115 194-336 576-692 (1311)
2 PRK02224 chromosome segregatio 98.0 0.059 1.3E-06 60.2 51.3 97 236-334 358-464 (880)
3 COG1196 Smc Chromosome segrega 97.2 0.86 1.9E-05 53.8 45.9 81 465-545 694-774 (1163)
4 PF10174 Cast: RIM-binding pro 97.2 0.79 1.7E-05 52.9 44.4 225 95-384 109-334 (775)
5 COG1196 Smc Chromosome segrega 96.7 1.9 4.2E-05 51.0 36.9 96 190-285 188-290 (1163)
6 PHA02562 46 endonuclease subun 96.6 1.1 2.4E-05 47.5 24.0 95 187-289 298-392 (562)
7 TIGR02169 SMC_prok_A chromosom 96.5 2.2 4.9E-05 48.3 36.2 42 178-219 167-208 (1164)
8 KOG0161 Myosin class II heavy 95.9 7.6 0.00016 49.2 43.5 232 31-290 1302-1547(1930)
9 KOG0161 Myosin class II heavy 95.6 9.7 0.00021 48.4 45.8 56 95-150 1085-1140(1930)
10 PRK02224 chromosome segregatio 95.5 5.8 0.00013 44.8 46.6 77 469-546 547-623 (880)
11 COG4942 Membrane-bound metallo 95.3 5.7 0.00012 43.5 26.7 82 473-554 182-264 (420)
12 PF00261 Tropomyosin: Tropomyo 95.2 3.6 7.7E-05 40.5 28.4 234 236-568 3-236 (237)
13 PRK11637 AmiB activator; Provi 95.1 1.2 2.6E-05 46.9 16.9 90 194-283 165-254 (428)
14 PRK04863 mukB cell division pr 95.1 13 0.00027 46.2 34.2 28 190-217 309-336 (1486)
15 TIGR02168 SMC_prok_B chromosom 94.9 8.6 0.00019 43.5 48.1 8 307-314 506-513 (1179)
16 KOG4674 Uncharacterized conser 94.6 19 0.0004 45.7 41.8 187 338-564 296-492 (1822)
17 TIGR02169 SMC_prok_A chromosom 94.4 12 0.00025 42.8 47.8 39 503-541 739-777 (1164)
18 PRK03918 chromosome segregatio 93.0 19 0.00042 40.6 49.3 34 34-67 204-237 (880)
19 TIGR02168 SMC_prok_B chromosom 92.6 22 0.00048 40.3 50.0 37 249-285 678-714 (1179)
20 PF03148 Tektin: Tektin family 92.1 18 0.0004 38.3 20.1 185 98-291 121-346 (384)
21 KOG0250 DNA repair protein RAD 91.6 39 0.00086 41.0 28.5 77 462-538 361-438 (1074)
22 PF13514 AAA_27: AAA domain 91.2 39 0.00084 40.2 48.1 110 170-285 593-710 (1111)
23 TIGR00606 rad50 rad50. This fa 90.9 45 0.00098 40.5 44.9 130 257-393 746-878 (1311)
24 PF12128 DUF3584: Protein of u 90.9 44 0.00096 40.3 46.4 86 484-569 792-877 (1201)
25 PF08317 Spc7: Spc7 kinetochor 90.3 13 0.00028 38.4 15.5 113 455-567 173-289 (325)
26 KOG0996 Structural maintenance 89.4 63 0.0014 39.9 33.1 156 158-316 750-923 (1293)
27 PF10174 Cast: RIM-binding pro 89.0 54 0.0012 38.6 30.9 153 230-392 339-492 (775)
28 PF01576 Myosin_tail_1: Myosin 88.9 0.12 2.7E-06 59.3 0.0 38 29-66 45-82 (859)
29 KOG0994 Extracellular matrix g 88.6 74 0.0016 39.7 27.2 219 29-289 1421-1646(1758)
30 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.4 5.1 0.00011 36.3 9.9 72 229-303 61-132 (132)
31 KOG4674 Uncharacterized conser 88.1 92 0.002 40.1 42.3 307 213-553 395-751 (1822)
32 PF10481 CENP-F_N: Cenp-F N-te 87.9 8.5 0.00018 40.6 12.3 138 29-181 17-161 (307)
33 PF12325 TMF_TATA_bd: TATA ele 86.8 15 0.00033 33.9 12.0 71 464-534 28-108 (120)
34 PHA02562 46 endonuclease subun 85.7 55 0.0012 35.0 29.5 38 510-547 374-411 (562)
35 PRK11637 AmiB activator; Provi 85.4 54 0.0012 34.8 25.0 57 231-287 58-114 (428)
36 PF09325 Vps5: Vps5 C terminal 85.2 35 0.00075 32.4 20.6 82 473-560 135-216 (236)
37 PF11559 ADIP: Afadin- and alp 84.8 16 0.00034 33.4 11.1 54 188-245 31-84 (151)
38 TIGR03185 DNA_S_dndD DNA sulfu 84.7 74 0.0016 35.7 23.2 25 263-287 422-446 (650)
39 PF09726 Macoilin: Transmembra 83.3 97 0.0021 36.0 20.5 39 476-514 618-656 (697)
40 PF00261 Tropomyosin: Tropomyo 81.6 58 0.0012 32.2 18.6 99 202-307 67-165 (237)
41 PF04065 Not3: Not1 N-terminal 81.4 14 0.0003 37.6 10.2 130 160-332 94-230 (233)
42 PF01576 Myosin_tail_1: Myosin 80.3 0.54 1.2E-05 54.3 0.0 104 32-149 161-271 (859)
43 PF06008 Laminin_I: Laminin Do 80.1 67 0.0014 32.0 25.5 59 456-514 175-233 (264)
44 PF07439 DUF1515: Protein of u 80.0 16 0.00035 34.0 9.2 70 462-543 4-78 (112)
45 PF00038 Filament: Intermediat 79.6 70 0.0015 32.0 25.3 39 231-269 206-244 (312)
46 PRK04778 septation ring format 78.2 1.2E+02 0.0026 33.8 25.9 78 462-546 351-428 (569)
47 PF04012 PspA_IM30: PspA/IM30 77.9 68 0.0015 30.8 14.7 115 231-356 73-188 (221)
48 PRK09039 hypothetical protein; 77.2 97 0.0021 32.7 15.2 98 189-286 75-182 (343)
49 PF08317 Spc7: Spc7 kinetochor 75.7 61 0.0013 33.6 13.1 59 227-285 209-267 (325)
50 KOG0933 Structural maintenance 75.3 2.1E+02 0.0046 35.3 21.4 101 221-321 288-388 (1174)
51 PF05557 MAD: Mitotic checkpoi 74.9 16 0.00034 41.4 9.3 73 249-321 358-430 (722)
52 cd07596 BAR_SNX The Bin/Amphip 74.6 70 0.0015 29.3 12.2 62 213-282 104-165 (218)
53 PF04912 Dynamitin: Dynamitin 72.4 1.1E+02 0.0024 32.3 14.3 76 290-384 312-387 (388)
54 KOG0250 DNA repair protein RAD 71.5 2.6E+02 0.0056 34.5 26.5 66 470-535 419-488 (1074)
55 smart00787 Spc7 Spc7 kinetocho 71.5 68 0.0015 33.7 12.3 84 455-538 168-255 (312)
56 KOG0612 Rho-associated, coiled 70.5 2.9E+02 0.0063 34.7 26.7 64 253-316 492-555 (1317)
57 PF10146 zf-C4H2: Zinc finger- 69.8 1.3E+02 0.0029 30.5 14.7 102 468-573 3-104 (230)
58 PF12329 TMF_DNA_bd: TATA elem 69.2 33 0.00071 29.1 7.8 51 252-302 2-52 (74)
59 PF09730 BicD: Microtubule-ass 68.9 1.9E+02 0.0041 34.1 16.1 113 464-576 32-175 (717)
60 PF06419 COG6: Conserved oligo 68.5 1.6E+02 0.0034 33.5 15.1 83 206-288 13-99 (618)
61 KOG0977 Nuclear envelope prote 67.8 2.3E+02 0.005 32.5 24.7 161 77-304 30-190 (546)
62 PRK10884 SH3 domain-containing 67.6 61 0.0013 32.3 10.6 70 468-540 95-164 (206)
63 PF07888 CALCOCO1: Calcium bin 67.0 2.4E+02 0.0052 32.4 36.6 49 269-317 283-331 (546)
64 PLN03229 acetyl-coenzyme A car 66.0 60 0.0013 38.3 11.5 96 26-121 458-572 (762)
65 PF10211 Ax_dynein_light: Axon 64.4 1.3E+02 0.0029 29.3 12.0 106 194-314 65-187 (189)
66 PF11932 DUF3450: Protein of u 63.4 73 0.0016 31.5 10.3 64 212-275 34-97 (251)
67 PF07200 Mod_r: Modifier of ru 62.7 84 0.0018 28.6 9.8 72 196-268 18-89 (150)
68 KOG0980 Actin-binding protein 62.6 3.6E+02 0.0079 32.9 25.8 75 192-269 470-547 (980)
69 PRK12704 phosphodiesterase; Pr 61.7 75 0.0016 35.5 11.0 41 229-269 84-124 (520)
70 PF11932 DUF3450: Protein of u 61.2 1.1E+02 0.0023 30.4 10.9 70 462-531 45-114 (251)
71 KOG0971 Microtubule-associated 60.5 4.1E+02 0.0089 32.9 27.2 279 32-387 233-554 (1243)
72 PF15066 CAGE1: Cancer-associa 60.1 1.8E+02 0.0039 33.1 13.3 81 463-548 387-473 (527)
73 PF07888 CALCOCO1: Calcium bin 59.5 3.3E+02 0.0071 31.4 28.7 88 202-289 143-233 (546)
74 PF07106 TBPIP: Tat binding pr 59.0 74 0.0016 29.7 9.0 21 269-289 116-136 (169)
75 PRK10803 tol-pal system protei 58.8 35 0.00076 34.5 7.3 52 462-513 43-94 (263)
76 COG2433 Uncharacterized conser 58.7 1.5E+02 0.0032 34.7 12.6 40 458-497 421-460 (652)
77 PF07106 TBPIP: Tat binding pr 57.8 94 0.002 29.0 9.4 82 464-545 77-161 (169)
78 PRK09039 hypothetical protein; 57.7 1.1E+02 0.0025 32.2 11.0 78 461-545 118-199 (343)
79 smart00721 BAR BAR domain. 57.7 1.7E+02 0.0037 27.5 13.5 105 189-317 121-238 (239)
80 PF08614 ATG16: Autophagy prot 57.3 58 0.0013 31.3 8.1 68 230-297 112-179 (194)
81 smart00787 Spc7 Spc7 kinetocho 57.2 2.3E+02 0.005 29.9 13.0 58 228-285 205-262 (312)
82 PF04111 APG6: Autophagy prote 57.1 91 0.002 32.6 10.1 85 194-278 8-94 (314)
83 PF10805 DUF2730: Protein of u 56.9 55 0.0012 29.2 7.4 28 270-297 73-100 (106)
84 PF13166 AAA_13: AAA domain 56.7 3.2E+02 0.007 30.5 15.9 37 184-220 366-402 (712)
85 PF10473 CENP-F_leu_zip: Leuci 55.4 64 0.0014 30.7 7.9 56 229-284 61-116 (140)
86 cd09238 V_Alix_like_1 Protein- 54.8 2E+02 0.0044 30.0 12.2 128 27-197 192-336 (339)
87 KOG0612 Rho-associated, coiled 54.7 5.5E+02 0.012 32.5 40.1 212 37-270 451-666 (1317)
88 PF03962 Mnd1: Mnd1 family; I 54.4 2.2E+02 0.0048 27.8 12.3 90 450-543 60-156 (188)
89 COG4942 Membrane-bound metallo 54.1 1.4E+02 0.0029 33.3 11.1 75 463-537 35-109 (420)
90 PF03915 AIP3: Actin interacti 53.7 1.4E+02 0.003 33.0 11.2 137 133-269 90-267 (424)
91 PF15619 Lebercilin: Ciliary p 53.3 2.4E+02 0.0052 27.9 11.8 82 464-545 10-105 (194)
92 smart00502 BBC B-Box C-termina 51.3 1.5E+02 0.0032 24.9 12.7 64 463-526 4-68 (127)
93 TIGR03319 YmdA_YtgF conserved 51.0 1.2E+02 0.0027 33.8 10.5 45 229-273 78-122 (514)
94 TIGR02680 conserved hypothetic 50.9 5.9E+02 0.013 31.8 23.3 26 264-289 553-578 (1353)
95 PF05667 DUF812: Protein of un 50.6 4.5E+02 0.0097 30.3 16.8 51 346-396 446-512 (594)
96 KOG4302 Microtubule-associated 50.0 5E+02 0.011 30.6 24.8 43 238-280 100-142 (660)
97 PRK04406 hypothetical protein; 49.6 1.1E+02 0.0024 26.2 7.8 51 465-515 3-53 (75)
98 PF15188 CCDC-167: Coiled-coil 48.8 54 0.0012 29.1 5.9 58 225-289 3-63 (85)
99 PRK11546 zraP zinc resistance 47.7 40 0.00087 32.3 5.3 52 234-285 61-112 (143)
100 PRK12704 phosphodiesterase; Pr 47.5 2.6E+02 0.0057 31.4 12.3 24 137-160 126-149 (520)
101 TIGR03319 YmdA_YtgF conserved 47.4 2.6E+02 0.0057 31.3 12.2 24 137-160 120-143 (514)
102 PF03148 Tektin: Tektin family 47.2 3.9E+02 0.0084 28.6 23.3 143 160-305 171-326 (384)
103 PF08614 ATG16: Autophagy prot 46.6 2.8E+02 0.006 26.7 11.6 14 538-551 178-191 (194)
104 PF05667 DUF812: Protein of un 45.0 5.4E+02 0.012 29.7 16.1 60 194-253 393-452 (594)
105 TIGR00293 prefoldin, archaeal 44.7 1.7E+02 0.0038 25.8 8.6 89 458-546 5-124 (126)
106 PF12777 MT: Microtubule-bindi 43.9 3.5E+02 0.0076 28.3 11.9 90 465-568 14-103 (344)
107 PF06637 PV-1: PV-1 protein (P 43.8 5.2E+02 0.011 29.1 13.9 69 67-166 330-398 (442)
108 cd07666 BAR_SNX7 The Bin/Amphi 43.6 3.9E+02 0.0083 27.6 19.7 28 270-297 55-82 (243)
109 PF08581 Tup_N: Tup N-terminal 43.6 2.2E+02 0.0048 24.8 10.8 68 466-543 4-71 (79)
110 PRK14140 heat shock protein Gr 43.3 2.5E+02 0.0054 28.0 10.2 28 262-289 44-71 (191)
111 KOG0018 Structural maintenance 43.0 7.8E+02 0.017 30.9 24.5 126 231-393 224-352 (1141)
112 PF12718 Tropomyosin_1: Tropom 42.8 2.9E+02 0.0063 25.9 14.6 101 463-563 32-138 (143)
113 PF04859 DUF641: Plant protein 42.7 61 0.0013 30.7 5.6 51 229-286 75-125 (131)
114 PF07889 DUF1664: Protein of u 42.3 3E+02 0.0065 26.0 11.3 64 206-279 36-99 (126)
115 PRK00106 hypothetical protein; 42.2 4E+02 0.0086 30.5 12.7 24 137-160 141-164 (535)
116 TIGR03185 DNA_S_dndD DNA sulfu 42.2 5.6E+02 0.012 29.0 34.5 87 454-540 372-467 (650)
117 PRK03918 chromosome segregatio 41.9 5.9E+02 0.013 29.2 47.6 34 465-498 665-698 (880)
118 PF04156 IncA: IncA protein; 41.8 3E+02 0.0065 25.8 15.2 78 468-545 83-160 (191)
119 PF05010 TACC: Transforming ac 41.6 3.9E+02 0.0084 27.0 17.8 118 144-285 88-205 (207)
120 PF10186 Atg14: UV radiation r 41.6 3.4E+02 0.0074 26.4 16.5 74 471-544 54-134 (302)
121 KOG2391 Vacuolar sorting prote 40.7 4E+02 0.0087 29.4 11.9 62 459-520 218-279 (365)
122 PF05529 Bap31: B-cell recepto 40.5 1.6E+02 0.0034 28.1 8.1 76 180-269 107-182 (192)
123 PF05384 DegS: Sensor protein 39.2 2.6E+02 0.0056 27.2 9.4 69 468-539 11-87 (159)
124 PF05008 V-SNARE: Vesicle tran 39.2 2.1E+02 0.0045 23.3 7.7 69 240-310 5-74 (79)
125 PF06810 Phage_GP20: Phage min 39.1 2.2E+02 0.0048 27.2 8.8 50 239-288 18-70 (155)
126 PF04011 LemA: LemA family; I 39.0 3.5E+02 0.0075 25.7 11.0 101 457-559 50-155 (186)
127 KOG4603 TBP-1 interacting prot 38.5 3E+02 0.0064 28.0 9.8 56 265-320 119-186 (201)
128 PF04111 APG6: Autophagy prote 38.0 5E+02 0.011 27.3 13.6 70 468-537 45-114 (314)
129 PRK10698 phage shock protein P 38.0 4.3E+02 0.0092 26.4 12.6 111 188-308 2-152 (222)
130 KOG0977 Nuclear envelope prote 37.6 7E+02 0.015 28.9 20.3 97 446-549 83-196 (546)
131 TIGR01837 PHA_granule_1 poly(h 37.3 3.2E+02 0.007 24.9 9.6 99 181-289 13-116 (118)
132 PF06810 Phage_GP20: Phage min 37.3 3.6E+02 0.0079 25.7 10.0 76 464-550 4-79 (155)
133 KOG0995 Centromere-associated 37.0 7.4E+02 0.016 29.0 34.3 80 467-552 461-540 (581)
134 PF10234 Cluap1: Clusterin-ass 36.1 2E+02 0.0044 30.1 8.7 75 456-538 159-234 (267)
135 COG3883 Uncharacterized protei 36.0 5.5E+02 0.012 27.1 15.7 132 230-395 41-178 (265)
136 PF05266 DUF724: Protein of un 35.4 4.5E+02 0.0098 26.0 13.3 107 172-279 23-141 (190)
137 PF05557 MAD: Mitotic checkpoi 35.3 4.8E+02 0.01 30.0 12.2 27 261-287 509-535 (722)
138 PF10473 CENP-F_leu_zip: Leuci 35.0 4.1E+02 0.009 25.4 13.5 79 474-566 60-138 (140)
139 KOG0018 Structural maintenance 34.9 1E+03 0.022 29.9 22.9 75 228-302 677-751 (1141)
140 PF10805 DUF2730: Protein of u 34.6 1.3E+02 0.0029 26.8 6.3 62 248-309 35-98 (106)
141 PRK04863 mukB cell division pr 34.3 1.1E+03 0.024 30.2 31.8 83 490-572 554-646 (1486)
142 COG2433 Uncharacterized conser 34.2 2E+02 0.0044 33.6 9.0 37 257-293 476-512 (652)
143 PF14193 DUF4315: Domain of un 34.1 73 0.0016 28.0 4.4 53 264-316 3-60 (83)
144 KOG3758 Uncharacterized conser 33.1 7.3E+02 0.016 29.4 13.0 81 208-288 48-132 (655)
145 PF05622 HOOK: HOOK protein; 33.0 14 0.00031 41.7 0.0 52 227-285 239-290 (713)
146 PF10186 Atg14: UV radiation r 32.7 4.7E+02 0.01 25.4 15.6 59 140-198 138-212 (302)
147 PRK04778 septation ring format 32.6 7.6E+02 0.016 27.7 34.9 203 102-317 114-337 (569)
148 KOG1962 B-cell receptor-associ 32.6 3.3E+02 0.0072 27.9 9.3 40 181-220 104-145 (216)
149 PF04102 SlyX: SlyX; InterPro 32.2 2.3E+02 0.0049 23.6 6.8 42 475-516 6-47 (69)
150 PF10046 BLOC1_2: Biogenesis o 32.2 1.9E+02 0.0041 25.4 6.7 28 262-289 66-93 (99)
151 PF12329 TMF_DNA_bd: TATA elem 32.1 2.4E+02 0.0052 24.0 7.1 29 261-289 39-67 (74)
152 COG4026 Uncharacterized protei 31.9 2.2E+02 0.0048 30.0 8.1 44 270-316 164-207 (290)
153 PRK05431 seryl-tRNA synthetase 31.7 1.8E+02 0.0039 31.5 7.8 82 210-291 10-95 (425)
154 PF10224 DUF2205: Predicted co 31.3 2.1E+02 0.0045 25.2 6.7 44 470-513 20-63 (80)
155 PF05278 PEARLI-4: Arabidopsis 31.2 1.9E+02 0.0042 30.5 7.6 47 261-307 213-260 (269)
156 PRK02119 hypothetical protein; 31.0 2.2E+02 0.0047 24.3 6.6 6 273-278 20-25 (73)
157 PRK02793 phi X174 lysis protei 30.9 2E+02 0.0043 24.4 6.4 24 251-274 25-48 (72)
158 PF10303 DUF2408: Protein of u 30.7 3E+02 0.0066 25.8 8.2 96 97-206 4-99 (134)
159 KOG4643 Uncharacterized coiled 30.7 1.2E+03 0.026 29.4 17.6 208 231-473 485-697 (1195)
160 TIGR01010 BexC_CtrB_KpsE polys 30.1 4.8E+02 0.01 27.0 10.3 107 183-291 142-264 (362)
161 PF08826 DMPK_coil: DMPK coile 30.1 3E+02 0.0065 23.1 7.2 52 230-281 4-58 (61)
162 PF06005 DUF904: Protein of un 29.9 3.6E+02 0.0077 23.1 8.5 64 251-317 7-70 (72)
163 KOG0614 cGMP-dependent protein 29.4 95 0.0021 36.1 5.5 48 229-276 26-73 (732)
164 PF14915 CCDC144C: CCDC144C pr 29.2 4.7E+02 0.01 28.3 10.1 80 228-307 159-245 (305)
165 KOG0976 Rho/Rac1-interacting s 29.2 1.2E+03 0.026 29.0 33.3 233 31-304 114-372 (1265)
166 PF05384 DegS: Sensor protein 29.0 5.5E+02 0.012 25.0 11.2 42 228-269 28-69 (159)
167 KOG0244 Kinesin-like protein [ 28.8 2.6E+02 0.0057 33.9 9.0 118 199-319 488-605 (913)
168 KOG4360 Uncharacterized coiled 28.4 3.3E+02 0.0072 31.5 9.3 63 473-542 240-302 (596)
169 PF08647 BRE1: BRE1 E3 ubiquit 28.3 4.1E+02 0.0089 23.3 13.0 92 472-567 2-93 (96)
170 KOG1003 Actin filament-coating 27.8 6.9E+02 0.015 25.7 16.3 98 191-288 21-121 (205)
171 PF07058 Myosin_HC-like: Myosi 27.6 4.1E+02 0.0089 29.1 9.4 76 468-545 2-89 (351)
172 PRK14141 heat shock protein Gr 27.6 3.9E+02 0.0085 27.1 8.8 16 341-356 112-127 (209)
173 PRK15048 methyl-accepting chem 27.4 8.2E+02 0.018 26.5 16.9 104 453-567 243-353 (553)
174 PF00038 Filament: Intermediat 27.4 6.4E+02 0.014 25.3 29.2 60 257-316 91-151 (312)
175 cd09235 V_Alix Middle V-domain 27.2 7.5E+02 0.016 26.0 19.5 29 197-225 193-221 (339)
176 KOG0982 Centrosomal protein Nu 27.2 8.2E+02 0.018 28.0 11.8 56 469-524 300-355 (502)
177 PRK13729 conjugal transfer pil 27.1 1.9E+02 0.0042 32.6 7.2 49 468-516 71-119 (475)
178 PF10211 Ax_dynein_light: Axon 26.5 2.7E+02 0.0058 27.2 7.3 59 228-286 128-187 (189)
179 KOG0804 Cytoplasmic Zn-finger 26.3 3.5E+02 0.0076 30.8 8.9 66 234-299 347-412 (493)
180 PRK10869 recombination and rep 26.3 9.8E+02 0.021 27.0 18.6 82 237-318 153-236 (553)
181 PRK14161 heat shock protein Gr 26.1 6.4E+02 0.014 24.8 10.9 39 251-289 15-53 (178)
182 PRK04325 hypothetical protein; 25.9 3E+02 0.0065 23.4 6.6 29 250-278 25-53 (74)
183 PF07544 Med9: RNA polymerase 25.7 2E+02 0.0043 24.7 5.6 56 226-281 20-78 (83)
184 PF12325 TMF_TATA_bd: TATA ele 25.7 4.5E+02 0.0097 24.5 8.2 23 230-252 40-62 (120)
185 PF09304 Cortex-I_coil: Cortex 25.7 3.2E+02 0.007 25.5 7.2 89 45-147 3-91 (107)
186 PF10779 XhlA: Haemolysin XhlA 25.4 3.3E+02 0.0071 22.6 6.7 46 470-515 3-48 (71)
187 cd09234 V_HD-PTP_like Protein- 25.3 8E+02 0.017 25.7 12.0 145 27-198 188-335 (337)
188 KOG2669 Regulator of nuclear m 24.9 2.7E+02 0.0058 30.1 7.5 136 170-309 140-291 (325)
189 PF10168 Nup88: Nuclear pore c 24.8 1.2E+03 0.026 27.6 13.8 105 463-567 540-645 (717)
190 PF02403 Seryl_tRNA_N: Seryl-t 24.7 3.4E+02 0.0074 23.4 7.0 69 463-531 33-104 (108)
191 COG3883 Uncharacterized protei 24.6 3.9E+02 0.0084 28.2 8.4 45 527-571 149-193 (265)
192 PF05262 Borrelia_P83: Borreli 24.6 1.1E+03 0.023 26.9 12.6 38 50-87 216-253 (489)
193 PRK10884 SH3 domain-containing 24.4 3.1E+02 0.0068 27.4 7.5 25 193-217 91-115 (206)
194 TIGR01069 mutS2 MutS2 family p 24.3 6.3E+02 0.014 29.8 10.9 40 188-227 497-536 (771)
195 cd07596 BAR_SNX The Bin/Amphip 24.1 5.6E+02 0.012 23.5 19.9 68 474-544 118-185 (218)
196 PRK09413 IS2 repressor TnpA; R 24.0 1.5E+02 0.0033 26.4 4.8 31 467-497 72-102 (121)
197 PF07798 DUF1640: Protein of u 24.0 2.9E+02 0.0063 26.3 6.9 85 171-287 14-98 (177)
198 PLN02320 seryl-tRNA synthetase 23.9 3.5E+02 0.0075 30.7 8.5 80 209-290 74-158 (502)
199 PRK00106 hypothetical protein; 23.7 6.2E+02 0.014 28.9 10.4 44 229-272 99-142 (535)
200 KOG3433 Protein involved in me 23.5 6.9E+02 0.015 25.7 9.6 75 231-305 85-159 (203)
201 PF04156 IncA: IncA protein; 23.5 6.2E+02 0.013 23.7 14.1 78 469-546 77-154 (191)
202 PF04102 SlyX: SlyX; InterPro 23.2 3E+02 0.0066 22.9 6.1 33 249-281 19-51 (69)
203 KOG3433 Protein involved in me 23.1 8.4E+02 0.018 25.1 11.9 89 455-543 77-169 (203)
204 PF06785 UPF0242: Uncharacteri 23.0 6.6E+02 0.014 27.9 10.0 84 229-312 129-217 (401)
205 PF10498 IFT57: Intra-flagella 22.8 1E+03 0.022 25.9 13.7 90 457-546 225-318 (359)
206 PF07795 DUF1635: Protein of u 22.5 2.2E+02 0.0048 29.2 6.1 112 60-193 17-129 (214)
207 PRK00295 hypothetical protein; 22.5 4.1E+02 0.0088 22.3 6.7 31 250-280 21-51 (68)
208 smart00338 BRLZ basic region l 22.5 3.1E+02 0.0067 21.9 5.9 41 504-544 22-62 (65)
209 PF12072 DUF3552: Domain of un 22.3 7.4E+02 0.016 24.2 11.9 53 97-160 93-145 (201)
210 cd08915 V_Alix_like Protein-in 21.8 9E+02 0.02 25.0 11.6 27 27-53 190-216 (342)
211 KOG4673 Transcription factor T 21.7 1.5E+03 0.033 27.6 23.5 69 198-289 412-480 (961)
212 TIGR02977 phageshock_pspA phag 21.5 7.8E+02 0.017 24.2 15.2 52 464-522 29-80 (219)
213 PF12072 DUF3552: Domain of un 21.5 7.6E+02 0.017 24.1 13.4 74 241-317 71-144 (201)
214 PRK14139 heat shock protein Gr 21.0 8.3E+02 0.018 24.3 9.6 89 229-320 41-131 (185)
215 PF00769 ERM: Ezrin/radixin/mo 20.9 8.9E+02 0.019 24.6 12.8 79 461-546 35-113 (246)
216 CHL00118 atpG ATP synthase CF0 20.9 6.8E+02 0.015 23.3 13.0 48 22-69 45-92 (156)
217 PF08336 P4Ha_N: Prolyl 4-Hydr 20.9 3.1E+02 0.0066 24.9 6.2 48 345-392 2-49 (134)
218 PF07246 Phlebovirus_NSM: Phle 20.8 6.7E+02 0.015 26.6 9.3 64 212-289 166-229 (264)
219 PRK02119 hypothetical protein; 20.5 4.1E+02 0.0088 22.6 6.4 41 502-542 3-43 (73)
220 PRK14155 heat shock protein Gr 20.5 8.4E+02 0.018 24.7 9.6 13 342-354 92-104 (208)
221 PRK04406 hypothetical protein; 20.4 5E+02 0.011 22.3 7.0 44 502-545 5-48 (75)
222 PF06156 DUF972: Protein of un 20.4 4.2E+02 0.0091 24.2 6.9 47 453-499 2-55 (107)
223 KOG0982 Centrosomal protein Nu 20.4 4.4E+02 0.0096 30.0 8.2 75 247-321 296-370 (502)
224 PRK12705 hypothetical protein; 20.3 6.9E+02 0.015 28.4 9.9 106 227-337 77-208 (508)
225 PF13863 DUF4200: Domain of un 20.2 5.9E+02 0.013 22.3 11.0 25 290-314 95-119 (126)
226 PF06698 DUF1192: Protein of u 20.1 1.5E+02 0.0033 24.8 3.7 25 522-546 21-45 (59)
227 PF14197 Cep57_CLD_2: Centroso 20.1 4.7E+02 0.01 22.2 6.6 46 462-507 22-67 (69)
228 PF05837 CENP-H: Centromere pr 20.0 6.4E+02 0.014 22.6 10.1 73 467-543 4-76 (106)
No 1
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=0.068 Score=63.33 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 008065 194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE 273 (579)
Q Consensus 194 neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~ 273 (579)
...+..+-+.++.+.+..+.+.... .++|..++.++.++..+...++...+.+.+ +
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~------------ 631 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-V------------ 631 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence 6667777777777777777766543 667888888888877776666655555541 1
Q ss_pred HHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh--cCCCccccccccccCCCccc
Q 008065 274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQET 336 (579)
Q Consensus 274 Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~v--dd~k~d~s~lsEs~f~~~et 336 (579)
.-++.|+..|..++.........++....+...+...|... ..++. -.||...|.+.+.
T Consensus 632 --~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~eee 692 (1311)
T TIGR00606 632 --CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEAE 692 (1311)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChhH
Confidence 12346666676666666677777788888888888888888 55554 4789998885554
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=97.95 E-value=0.059 Score=60.24 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=47.2
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhchhhhchhhHHhhhhHHHHHHH
Q 008065 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (579)
Q Consensus 236 is~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v-------~e~e~klk~~e~~r~lL~dql~~vs~ihd~ 308 (579)
+..++.+++...+.++.+...+...+..+..++.+...++..+ ..|+..|..++....-|.+.++-+......
T Consensus 358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~ 437 (880)
T PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443333 345555555555555555555555555555
Q ss_pred HHHHHhhhc---CCCccccccccccCCCc
Q 008065 309 VDDIIKIVD---DGNLDQSGLSESLFLPQ 334 (579)
Q Consensus 309 L~~vi~~vd---d~k~d~s~lsEs~f~~~ 334 (579)
+...+..+. .+.. =.+|.+.|.++
T Consensus 438 ~~~~l~~~~~~l~~~~--Cp~C~r~~~~~ 464 (880)
T PRK02224 438 ARERVEEAEALLEAGK--CPECGQPVEGS 464 (880)
T ss_pred HHHHHHHHHHHHhccc--CCCCCCcCCCc
Confidence 555555554 2332 24677766533
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.17 E-value=0.86 Score=53.80 Aligned_cols=81 Identities=32% Similarity=0.377 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
.+.+..+...+.+++..+...+-+.+.++........++.+...++++|++.-.-+..+.+.+-..+...++++..|...
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666677777888888888777777777888888888888888888665
Q ss_pred H
Q 008065 545 A 545 (579)
Q Consensus 545 c 545 (579)
.
T Consensus 774 ~ 774 (1163)
T COG1196 774 L 774 (1163)
T ss_pred H
Confidence 5
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.15 E-value=0.79 Score=52.94 Aligned_cols=225 Identities=16% Similarity=0.217 Sum_probs=133.2
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 008065 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (579)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (579)
.|+.-+.+..++.-+|..++.++..-+.=+..-.+++-.-..++....+|..-.-|| -..|+|
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~ 171 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS 171 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence 444445555555566666665555433322222233333334444555555555554 123344
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHH
Q 008065 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE 254 (579)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ 254 (579)
.. -.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +. ...++.-+.+.
T Consensus 172 ~~--~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq 230 (775)
T PF10174_consen 172 AE--AEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ 230 (775)
T ss_pred cc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence 31 11223456677777888888898899999999999999887765 32 23344555788
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCc
Q 008065 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQ 334 (579)
Q Consensus 255 ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~~ 334 (579)
+-+..||.+|+.+|+-+..|.+-|..|...+......|..+..+|..+..-...+-+=++.+.
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~----------------- 293 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLK----------------- 293 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence 889999999999999777777777777665555556677777777766555554433222221
Q ss_pred cchhHHHHHHHHhhhh-hHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHH
Q 008065 335 ETDMEENIRASLAGME-SIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQL 384 (579)
Q Consensus 335 etd~Ee~lrasl~~~k-sI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L 384 (579)
--|...+ -|+.+.+...++.+...++ +.++-.|-.++...
T Consensus 294 ---------~eL~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~k 334 (775)
T PF10174_consen 294 ---------LELSRKKSELEALQTRLETLEEQDSDM-RQHIEVLKESLRAK 334 (775)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHH
Confidence 1122333 3555666666666666666 55555555444443
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.74 E-value=1.9 Score=50.97 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=63.9
Q ss_pred hhchhHHHHHHHHhhhhhhhhhhHHHHHhhhh-------chheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHH
Q 008065 190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQR-------NFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDE 262 (579)
Q Consensus 190 ~KR~neiveel~~Q~da~~ksrn~aReqmeqr-------ny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ 262 (579)
+.|.++|..+|=+|++.-.+.++.|..--++. .+-+..++.++...+..+++++..-...++++...+.+.+.
T Consensus 188 l~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (1163)
T COG1196 188 LERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK 267 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999888888887644433 33445566666666777777777777777777666666666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Q 008065 263 KVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 263 ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
+|..+..+..+++..+..+...+
T Consensus 268 ~i~~~~~~~~e~~~~~~~~~~~~ 290 (1163)
T COG1196 268 EIEELKSELEELREELEELQEEL 290 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555554333
No 6
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.56 E-value=1.1 Score=47.51 Aligned_cols=95 Identities=13% Similarity=0.243 Sum_probs=54.5
Q ss_pred HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 008065 187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266 (579)
Q Consensus 187 ygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~e 266 (579)
.+.+...++...++=.|++.......+..+.+++.+ ++...++.++..+..+.+.++.+.+....-+.+|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~--------~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~ 369 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN--------EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE 369 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777888888888888888887777776443 345555555555555555555544444444445554
Q ss_pred HHHhHHHHHHHHHHHHHHhhchh
Q 008065 267 IESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 267 le~E~~~Lk~~v~e~e~klk~~e 289 (579)
++.....+-..+..++.+|.++.
T Consensus 370 l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 370 LQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHhhhhchHHHHHHHHHHHHHHH
Confidence 44444434334444444443333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.47 E-value=2.2 Score=48.30 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=24.7
Q ss_pred cccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhh
Q 008065 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQME 219 (579)
Q Consensus 178 KYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqme 219 (579)
+|.--..-++.-+.|+++++.+|=.|++...+-...|..+.+
T Consensus 167 ~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445666777777777776666665555555555444
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.92 E-value=7.6 Score=49.23 Aligned_cols=232 Identities=24% Similarity=0.319 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 008065 31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD 110 (579)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d 110 (579)
.+.++--+|+.|-+.+-+..+....++-.++.|+---.+....+.+..++--.+.-+ +....-|+.+.+.+.....+
T Consensus 1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e---~~~~~~k~e~~~~~~~eele 1378 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAE---LAQWKKKFEEEVLQRLEELE 1378 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345555667888888888888888888888888777777777777555543332221 11222233334444334444
Q ss_pred HHHHHHHH----HhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHH
Q 008065 111 EVVKQLDE----VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVV 186 (579)
Q Consensus 111 e~~kq~d~----~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~ava 186 (579)
++.|.+-. .-..=+..-...+..-+++..|+.|.+....=+ ++.-..++ | |-.-|| =-
T Consensus 1379 e~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~----~~~~~~~~----~----le~k~k------~f 1440 (1930)
T KOG0161|consen 1379 ELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL----ERSRAAVA----A----LEKKQK------RF 1440 (1930)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHH----H----HHHHHH------HH
Confidence 44433322 111100000011112223333444443332222 11100000 0 111111 01
Q ss_pred HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhh---hchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHH
Q 008065 187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQ---RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEK 263 (579)
Q Consensus 187 ygv~KR~neiveel~~Q~da~~ksrn~aReqmeq---rny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~k 263 (579)
.+.+-.....++++..-+|++.++=... +.+-+ +-|+.+++ .+-.++.+..+-.+.+++|..++.+....
T Consensus 1441 ~k~l~e~k~~~e~l~~Eld~aq~e~r~~-~tel~kl~~~lee~~e------~~e~l~renk~l~~ei~dl~~~~~e~~k~ 1513 (1930)
T KOG0161|consen 1441 EKLLAEWKKKLEKLQAELDAAQRELRQL-STELQKLKNALEELLE------QLEELRRENKNLSQEIEDLEEQKDEGGKR 1513 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677888888888865432111 11122 23444433 66778889999999999999999999888
Q ss_pred HHHHHH-------hHHHHHHHHHHHHHHhhchhh
Q 008065 264 VAEIES-------QGLELRQLVNEYEDKLKNLES 290 (579)
Q Consensus 264 i~ele~-------E~~~Lk~~v~e~e~klk~~e~ 290 (579)
+.++++ +..+|+..+.++++.++..++
T Consensus 1514 v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1514 VHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 888877 777888888888888766653
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.65 E-value=9.7 Score=48.36 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=32.9
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhh
Q 008065 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHM 150 (579)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~m 150 (579)
.+..+..+.+..++..+.+.++.++.-.=+-.|.+...+.|++..|..+++.-.+=
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777776665554444555555666665555555544433
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=95.50 E-value=5.8 Score=44.84 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (579)
Q Consensus 469 K~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE 546 (579)
..++.++.+....-++++++...+..-...-..+++.....+..|++ -.-+...++++-.++...+.++..|+...+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 623 (880)
T PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELND 623 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555566666666666666663 222333344455555555556666665544
No 11
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.28 E-value=5.7 Score=43.45 Aligned_cols=82 Identities=30% Similarity=0.300 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 008065 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE-QEAAA 551 (579)
Q Consensus 473 lEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE-lEveA 551 (579)
.|=.+|+..+.+.+.+-..|..+.++|.|-+.++...+...+.+-.-+..|=..|=-.|+-+|.++++=+++++ .++++
T Consensus 182 aeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~ 261 (420)
T COG4942 182 AEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAA 261 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888999999999999999999999999999999999999999999999999999999998777776 55554
Q ss_pred hhh
Q 008065 552 GRA 554 (579)
Q Consensus 552 Gka 554 (579)
-+.
T Consensus 262 ~~~ 264 (420)
T COG4942 262 ARA 264 (420)
T ss_pred HHH
Confidence 444
No 12
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.18 E-value=3.6 Score=40.48 Aligned_cols=234 Identities=18% Similarity=0.247 Sum_probs=135.7
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhh
Q 008065 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI 315 (579)
Q Consensus 236 is~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~ 315 (579)
|..++.++-....-++.++..+...+.+....+.++..|..+|.-+|..|...+..-.-....|.-+.+-.+......+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777778888888899999999999999999999999999988776655555555666666655555444444
Q ss_pred hcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHH
Q 008065 316 VDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLL 395 (579)
Q Consensus 316 vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEnedI~sLL 395 (579)
+..... ..++.|..--..++-+-..+..+..|.. .-.+++.-++..+...
T Consensus 83 lE~r~~---------------~~eeri~~lE~~l~ea~~~~ee~e~k~~----E~~rkl~~~E~~Le~a----------- 132 (237)
T PF00261_consen 83 LENREQ---------------SDEERIEELEQQLKEAKRRAEEAERKYE----EVERKLKVLEQELERA----------- 132 (237)
T ss_dssp HHHHHH---------------HHHHHHHHCHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHH-----------
T ss_pred HHhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----------
Confidence 432111 1122222111111111111212222221 1111111111111111
Q ss_pred HHHhhhhcccCCCCchhhHHHHhhhhhhhhcccccccccccCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHH
Q 008065 396 RSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEI 475 (579)
Q Consensus 396 RsALsEKea~d~~qk~seLLQiAE~GLq~vGfgF~~~~~~geg~~~~S~d~~~~~~~eedEv~SLAsalEniMK~sqlEI 475 (579)
-.=+..+++-++.+..++
T Consensus 133 --------------------------------------------------------------EeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 133 --------------------------------------------------------------EERAEAAESKIKELEEEL 150 (237)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------HHHHhhhchhHHHHHHHH
Confidence 111233344444444444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008065 476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAV 555 (579)
Q Consensus 476 ~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAGkav 555 (579)
..+...|..+-.-.+..-...+.=..+|..++.++++.|.|--++-.+|--|-..|...|.++..||.... .+
T Consensus 151 ~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~-------~~ 223 (237)
T PF00261_consen 151 KSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK-------KV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 44444443333333333333344456688889999999999999999999999999999999999998753 34
Q ss_pred HHHHHHHHhhhhh
Q 008065 556 EQEFVAQVCFLSC 568 (579)
Q Consensus 556 eqEf~~q~~~l~~ 568 (579)
-.|.-.-|.-|++
T Consensus 224 ~~eld~~l~el~~ 236 (237)
T PF00261_consen 224 QEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhC
Confidence 4454444444443
No 13
>PRK11637 AmiB activator; Provisional
Probab=95.14 E-value=1.2 Score=46.89 Aligned_cols=90 Identities=17% Similarity=0.275 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 008065 194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE 273 (579)
Q Consensus 194 neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~ 273 (579)
+..--+++.++..+.+.-...+.+++..-=+..-...++++....|....+.+...+..|.+.....+..+.+++++...
T Consensus 165 ~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~ 244 (428)
T PRK11637 165 NQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESR 244 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555444445555566777777777777777778888888888888888877777777
Q ss_pred HHHHHHHHHH
Q 008065 274 LRQLVNEYED 283 (579)
Q Consensus 274 Lk~~v~e~e~ 283 (579)
|...|.++..
T Consensus 245 L~~~I~~l~~ 254 (428)
T PRK11637 245 LRDSIARAER 254 (428)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.07 E-value=13 Score=46.24 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=14.6
Q ss_pred hhchhHHHHHHHHhhhhhhhhhhHHHHH
Q 008065 190 IKRTNEIVEELVGQIDATAKSRNDVREQ 217 (579)
Q Consensus 190 ~KR~neiveel~~Q~da~~ksrn~aReq 217 (579)
+.|.++|+.++-.++..-.+.+..|+..
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.90 E-value=8.6 Score=43.46 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 008065 307 DQVDDIIK 314 (579)
Q Consensus 307 d~L~~vi~ 314 (579)
+.+.+++.
T Consensus 506 ~~v~~~i~ 513 (1179)
T TIGR02168 506 EGVKALLK 513 (1179)
T ss_pred hHHHHHHh
Confidence 34444443
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.55 E-value=19 Score=45.73 Aligned_cols=187 Identities=19% Similarity=0.207 Sum_probs=93.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhHHH-------HHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCc
Q 008065 338 MEENIRASLAGMESIYQLTRIVVEKTRDL-------VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK 410 (579)
Q Consensus 338 ~Ee~lrasl~~~ksI~eLa~eV~~K~~~~-------~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~d~~qk 410 (579)
+..+...+..+...+.-|...+..-...+ ....++....++..|.+|..+-.|-+..+..++...+..
T Consensus 296 ~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s----- 370 (1822)
T KOG4674|consen 296 LSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVS----- 370 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhh-----
Confidence 33344444555555555555555544444 233445555777888888888888888888755533221
Q ss_pred hhhHHHHhhhhhhhhcccccccccccCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008065 411 TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (579)
Q Consensus 411 ~seLLQiAE~GLq~vGfgF~~~~~~geg~~~~S~d~~~~~~~eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~ 490 (579)
+..-.|.++ .+-|+-| -++|+-=.-+.+-|+-..++|-.++..|-.--.++.
T Consensus 371 --~~~a~~s~~-~~~~~sL-------------------------tk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~ 422 (1822)
T KOG4674|consen 371 --EKAALASSL-IRPGSSL-------------------------TKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVK 422 (1822)
T ss_pred --hHHHHHHhh-cccchhH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111211 1222222 235665555666666666666666655555545555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHh
Q 008065 491 LLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR---WKAAAEQEAAAGRAVEQEFVAQVC 564 (579)
Q Consensus 491 ~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~R---WKeAcElEveAGkaveqEf~~q~~ 564 (579)
..--.+..|..++++...++-.|...--+.+++ |.-+|.++-+ -...|+.|.-.=..-+.....|++
T Consensus 423 ~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~-------~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~ 492 (1822)
T KOG4674|consen 423 QKAPILKEQRSELERMQETKAELSEELDFSNQK-------IQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVN 492 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444433333333 2222222222 223455555444444455555543
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.41 E-value=12 Score=42.78 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 008065 503 LSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW 541 (579)
Q Consensus 503 Ia~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RW 541 (579)
+.....+++.++.+-.-+...++.+...+.....++..+
T Consensus 739 ~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l 777 (1164)
T TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344343333333333444444444444444333
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=92.97 E-value=19 Score=40.59 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHH
Q 008065 34 EVLAELNRERQAREAAENSATELSEKFNRLKALA 67 (579)
Q Consensus 34 ~l~ael~~er~ar~aae~s~~e~~~~f~rlkala 67 (579)
++.+++..=+..-..++.....++..++.|....
T Consensus 204 ~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 204 EVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433344444444444444444444443
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.57 E-value=22 Score=40.30 Aligned_cols=37 Identities=43% Similarity=0.570 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 249 ~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
.++.+.+.+..-..++.+++.++..++..+..+...+
T Consensus 678 e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 714 (1179)
T TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443334443333333333
No 20
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=92.08 E-value=18 Score=38.27 Aligned_cols=185 Identities=21% Similarity=0.277 Sum_probs=101.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 008065 98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG-- 172 (579)
Q Consensus 98 ~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~---~k~f~~~~-- 172 (579)
|-.|+.-+...++-+.+.++.+..+ |-.--.|+..|...+.. ++-.-+|+.....+.| .-+|.|++
T Consensus 121 L~kE~~li~~~~~lL~~~l~~~~eQ-------l~~lr~ar~~Le~Dl~d--K~~A~~ID~~~~~L~~~S~~i~~~~~~~r 191 (384)
T PF03148_consen 121 LLKEVELIENIKRLLQRTLEQAEEQ-------LRLLRAARYRLEKDLSD--KFEALEIDTQCLSLNNNSTNISYKPGSTR 191 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence 4445555666666666666665554 22222233334333322 2233344444433332 22233322
Q ss_pred -CCCCccccCchhHHHHhhhchhHHHHHH---HHhhhhh-hhhhhHHHHH-------hhhhchheeeehhhhHHHhhhch
Q 008065 173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR 240 (579)
Q Consensus 173 -lP~SqKYtGl~avaygv~KR~neiveel---~~Q~da~-~ksrn~aReq-------meqrny~iAIEVSqLEasis~lr 240 (579)
-|.+.-|.-....++..|.++..-+..- -..|+.+ ...+++.+.| +.+|=++.--=-.+||-......
T Consensus 192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~ 271 (384)
T PF03148_consen 192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL 271 (384)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2444455556666677776665433221 1122211 1233333333 34444555555567888888888
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhchhhh
Q 008065 241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESH 291 (579)
Q Consensus 241 ~eva~k~s~~e~l~ks~~eke~ki~ele~------------------------E~~~Lk~~v~e~e~klk~~e~~ 291 (579)
+|++.-...++.|++++.+|++-+.=.+. ||..|++.+..|..+|...+..
T Consensus 272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~ 346 (384)
T PF03148_consen 272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS 346 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999988888776443332 7888888888888877776633
No 21
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.57 E-value=39 Score=41.03 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAES-SLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI 538 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs-~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi 538 (579)
.-.+|-|+..+-++-.|+..+.....+. ..+....++-++++..+...|+.||+...=|.+.-++++.+++.-++|.
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4467778888888888888888888888 7888888888888999999999998877777888888888888877775
No 22
>PF13514 AAA_27: AAA domain
Probab=91.17 E-value=39 Score=40.21 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=51.4
Q ss_pred CCCCCCCccccCchhHHHHhhhchhHHHHH------HHHhhhhhhhhhhHHHHHhhhhchheee--ehhhhHHHhhhchH
Q 008065 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIVEE------LVGQIDATAKSRNDVREQMEQRNFEIAI--EVSELEATISGLRE 241 (579)
Q Consensus 170 ~~~lP~SqKYtGl~avaygv~KR~neivee------l~~Q~da~~ksrn~aReqmeqrny~iAI--EVSqLEasis~lr~ 241 (579)
+.|+|.+ |+-.-+.+.+-..+.+. .-..++.....+..++..+...=..... +++.+=.....+++
T Consensus 593 ~~g~p~~------p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~ 666 (1111)
T PF13514_consen 593 AAGLPLS------PAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGPAEELAALLEEAEALLE 666 (1111)
T ss_pred hcCCCCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHH
Confidence 5567754 65555666655554432 2233444445555555555544333333 22222222222333
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 242 EVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 242 eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
+........+.++..+..-+..+...+.+...+.+.+.......
T Consensus 667 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 710 (1111)
T PF13514_consen 667 EWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEW 710 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555555444443
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.92 E-value=45 Score=40.49 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=57.0
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc---hhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCC
Q 008065 257 LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR---PLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLP 333 (579)
Q Consensus 257 ~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r---~lL~dql~~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~ 333 (579)
+...+.++.+++.++..++..++.++..+..+.... .-|...+..+.++...+..+=+.|++-... ++.+.-.
T Consensus 746 ip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~---l~~~~~~- 821 (1311)
T TIGR00606 746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK---LQGSDLD- 821 (1311)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccc-
Confidence 333344445555555555555555555554433222 124555555555565555555555532221 1100000
Q ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH
Q 008065 334 QETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393 (579)
Q Consensus 334 ~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEnedI~s 393 (579)
.+ + ..|...+.....-++-...-...+..-.+....++..|...+..+..++-.+..
T Consensus 822 -~s-~-~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 822 -RT-V-QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred -CC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1 113322333333333222223334444455556666666666666666666555
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.85 E-value=44 Score=40.31 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=50.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008065 484 ELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQV 563 (579)
Q Consensus 484 EsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAGkaveqEf~~q~ 563 (579)
..|.+...-+......-.++...+.+...|+.+.+-+.+.+..|--+.+....++.+=+...+.+..+=+..+.++...+
T Consensus 792 ~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l 871 (1201)
T PF12128_consen 792 ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQL 871 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566555555555556666666666666666666666666666665555555555555555555555555555
Q ss_pred hhhhhh
Q 008065 564 CFLSCL 569 (579)
Q Consensus 564 ~~l~~~ 569 (579)
..|.++
T Consensus 872 ~~l~~~ 877 (1201)
T PF12128_consen 872 RRLRDL 877 (1201)
T ss_pred HHHHHH
Confidence 544443
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.28 E-value=13 Score=38.41 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=87.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 008065 455 DEIYNLAGALENIVKASQLEIVELRHSVEEL----RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD 530 (579)
Q Consensus 455 dEv~SLAsalEniMK~sqlEI~eLrhsLEEs----RsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~d 530 (579)
.-+..+.-.+.+.-..+..++..|+....+. ..+...|+.-+..+..+|......+.+|+.+=.=+...|+.+...
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777778888888899999999888865 677888899999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 008065 531 IAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLS 567 (579)
Q Consensus 531 IkaAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~ 567 (579)
+.+...+|..+..-++.=---...-+....+.+..|.
T Consensus 253 k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 253 KQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999998887766322222333444444444443
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.44 E-value=63 Score=39.91 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=95.2
Q ss_pred hhcccCCCCCCCCCC-CCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHh
Q 008065 158 ISGKVSNFKNFSAGG-LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236 (579)
Q Consensus 158 is~k~s~~k~f~~~~-lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasi 236 (579)
.||..|+--+-..+| .-++.--||....+---+-|+-.-+.+..+|+-..--.=++..-+...|--+.-+..+.|.+++
T Consensus 750 ~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~ 829 (1293)
T KOG0996|consen 750 KSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV 829 (1293)
T ss_pred ccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH
Confidence 455555443332333 4444446677776766666666666666666655544445555555566666667777777777
Q ss_pred hhchHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhHHHH-----H-HHHHHHHHHhhchhhhchhhHH-hh
Q 008065 237 SGLREEVAKKSSFIENLEKS----------LIEKDEKVAEIESQGLEL-----R-QLVNEYEDKLKNLESHRPLLVD-QL 299 (579)
Q Consensus 237 s~lr~eva~k~s~~e~l~ks----------~~eke~ki~ele~E~~~L-----k-~~v~e~e~klk~~e~~r~lL~d-ql 299 (579)
.++-..++--.+-+-.+++. +.++.+.|+++++|+.++ + +.|.+|-.++ +.-...++. |=
T Consensus 830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i---~~i~~e~~q~qk 906 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKI---DEIGGEKVQAQK 906 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHhhchhhHHhH
Confidence 66666444444444444433 345567789999998888 5 8888888887 433333333 66
Q ss_pred hhHHHHHHHHHHHHhhh
Q 008065 300 NYVSKIHDQVDDIIKIV 316 (579)
Q Consensus 300 ~~vs~ihd~L~~vi~~v 316 (579)
+-|.+++++|..+-.-+
T Consensus 907 ~kv~~~~~~~~~l~~~i 923 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADI 923 (1293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778888877774433
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.01 E-value=54 Score=38.58 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=83.0
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 008065 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (579)
Q Consensus 230 SqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L 309 (579)
+.|-+-+-.||-++..+-+.++...+++..-....+-+.-|+..|++..+..+.++.-|...-.-|-+++. .=...|
T Consensus 339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~---ekd~ql 415 (775)
T PF10174_consen 339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR---EKDRQL 415 (775)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34666677777777788887777777777777777777778999999999998888655544333444332 222235
Q ss_pred HHHHhhhcCCCccccccccccCCCc-cchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhh
Q 008065 310 DDIIKIVDDGNLDQSGLSESLFLPQ-ETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEK 388 (579)
Q Consensus 310 ~~vi~~vdd~k~d~s~lsEs~f~~~-etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEn 388 (579)
...-.++.. ..|.. ..+. -+.+|+-+...-.-...|-++-.....-...=.+.-+++.+.+..+|.+|-++-
T Consensus 416 ~~~k~Rl~~-~~d~~------~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 416 DEEKERLSS-QADSS------NEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHhc-ccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555554 33211 1100 012222222221112222221111111222333555666777777777777765
Q ss_pred hhHH
Q 008065 389 EHIV 392 (579)
Q Consensus 389 edI~ 392 (579)
.+-.
T Consensus 489 sEk~ 492 (775)
T PF10174_consen 489 SEKE 492 (775)
T ss_pred HHHH
Confidence 5544
No 28
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.92 E-value=0.12 Score=59.34 Aligned_cols=38 Identities=42% Similarity=0.539 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHH
Q 008065 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKAL 66 (579)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkal 66 (579)
.-++.+|-.+|+.||.+|..||-.++.|..-+.=|+.-
T Consensus 45 q~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~ 82 (859)
T PF01576_consen 45 QARIEELEEELESERQARAKAEKQRRDLSEELEELKER 82 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999998887766654
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.64 E-value=74 Score=39.67 Aligned_cols=219 Identities=18% Similarity=0.254 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 008065 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA 108 (579)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~ 108 (579)
..+|+.-+||.++=.+.-+.|..+.+|.+.+-.|. +-+=.-..-|-+++ |+-
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~-------~~~a~as~~q~~~s---------------------~~e 1472 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA-------LEQANASRSQMEES---------------------NRE 1472 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHH---------------------HHH
Confidence 45677777777777777666776667666553332 22211111111121 112
Q ss_pred HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc----cccCchh
Q 008065 109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ----KYTGLPA 184 (579)
Q Consensus 109 ~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~Sq----KYtGl~a 184 (579)
-+.+.+|+-+.+-+-+-+-+++.+++. .-|..+|-....-+-.=..+|--.|+..+|. -+=|-++- .-.-|++
T Consensus 1473 l~~Li~~v~~Flt~~~adp~si~~vA~--~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAE--EVLALELPLTPEQIQQLTGEIQERVASLPNV-DAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHHHHHHH
Confidence 223445555666665556666666655 3466677666666655566666666665553 11132220 1123455
Q ss_pred HHHHhhhchhHH---HHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhH
Q 008065 185 VVYGVIKRTNEI---VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKD 261 (579)
Q Consensus 185 vaygv~KR~nei---veel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke 261 (579)
.|---=|++.++ +|+++.-+..+.++-+.|..-|.|-+ +.|..-++.+++--.+....|+-+.---
T Consensus 1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-----------~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-----------RDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444433 44555555666666666666665543 2333444444544444445555566666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 262 ~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
..+.+|++-|++||-+...-....++++
T Consensus 1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7778888877777777665555554444
No 30
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.36 E-value=5.1 Score=36.32 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=40.1
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs 303 (579)
++.|.+..+.++.++..-.+..+.....+...+....+ +=..|.+-+.+++.++..|..|+.+|.+||..++
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls 132 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444444444444444444444444444444333222 2235555555666666666899999999997653
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.06 E-value=92 Score=40.06 Aligned_cols=307 Identities=21% Similarity=0.244 Sum_probs=161.8
Q ss_pred HHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc
Q 008065 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR 292 (579)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r 292 (579)
..-.||++.+. |+-++.-.++...++|-.++.++..=-..+.---..++++.++..++.+.|..++.-+..+..++
T Consensus 395 ~~qqqle~~~l----ele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~ 470 (1822)
T KOG4674|consen 395 KLQQQLESLKL----ELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQL 470 (1822)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666654 34566666666666666666666654444444455566666666666666666666665555333
Q ss_pred hhhHHhhhhHHHHHHHH-------HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHH---HHHHH
Q 008065 293 PLLVDQLNYVSKIHDQV-------DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTR---IVVEK 362 (579)
Q Consensus 293 ~lL~dql~~vs~ihd~L-------~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~---eV~~K 362 (579)
.-+.-++......+.-| ..=++++..+... . -++.-.-++++.+.-|-.-|..+++|-+|.- +....
T Consensus 471 ~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~--~-~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~ 547 (1822)
T KOG4674|consen 471 NDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKI--T-VSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNA 547 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--c-cCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333333332222211 1112223322221 1 1111144677777888888888888887642 22222
Q ss_pred hHHHH---Hh------------hHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcc
Q 008065 363 TRDLV---QK------------KSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGI 427 (579)
Q Consensus 363 ~~~~~---E~------------k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~d~~qk~seLLQiAE~GLq~vGf 427 (579)
|+.+- |. -+-.+..+...|..|.++..+.+..+.+-+++|.-.-
T Consensus 548 vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~--------------------- 606 (1822)
T KOG4674|consen 548 VRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK--------------------- 606 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 22222 22 2223446778999999999999999999999876510
Q ss_pred cccccccccCC---CCCCCc-cccC-CCc------chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008065 428 DFKFSKLLSDG---KVPVSD-DKAN-AME------TEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHL 496 (579)
Q Consensus 428 gF~~~~~~geg---~~~~S~-d~~~-~~~------~eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~ 496 (579)
.+-.-+.+. ++.+|. +.+. |.. ..+.+.-+.-.-.-.+++.++-.+..|+-.+...|++...+....
T Consensus 607 --e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~ 684 (1822)
T KOG4674|consen 607 --ELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL 684 (1822)
T ss_pred --HhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111111111 000011 1111 110 122333344455556677777777777777777777766665443
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008065 497 EAQ-------AKELSHRMKRIEELEEKERIANES-------VEGLMLDIAAAEEEISRWKAAAEQEAAAGR 553 (579)
Q Consensus 497 E~Q-------aKeIa~~~~~IkELEErErvl~en-------VEeLm~dIkaAEEEi~RWKeAcElEveAGk 553 (579)
.-+ -+.|..+...+..|++|..-+-.. |..+.-++-++. +|-..++-||..=|
T Consensus 685 ~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~----~k~~~le~ev~~LK 751 (1822)
T KOG4674|consen 685 NLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSAN----EKLEKLEAELSNLK 751 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHH
Confidence 333 234556666677777665433221 334444444443 45556666665543
No 32
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.89 E-value=8.5 Score=40.60 Aligned_cols=138 Identities=20% Similarity=0.312 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHH----H
Q 008065 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----E 104 (579)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----~ 104 (579)
.+++.+|..-||+=.+-|.--.+-+..+++.+..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|. +
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q 96 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ 96 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence 567788888888766666666677777777776666544444333333444444434444555577777887776 2
Q ss_pred Hh---hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccC
Q 008065 105 VN---IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG 181 (579)
Q Consensus 105 v~---~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtG 181 (579)
|+ +|-.-..+|++...- +.. -+++|++.|-.-..+|--.++---.|-|+| +.|++.+|.|+|
T Consensus 97 v~~lEgQl~s~Kkqie~Leq----------elk----r~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q~~~~ 161 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQ----------ELK----RCKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQYYSD 161 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHH----HHHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhhhhhh
Confidence 21 111222223322111 123 388899988877777776677677788899 778888877765
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.80 E-value=15 Score=33.89 Aligned_cols=71 Identities=31% Similarity=0.333 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL---EAQAKELSHRMKRIEELEEKERIAN-------ESVEGLMLDIAA 533 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~---E~QaKeIa~~~~~IkELEErErvl~-------enVEeLm~dIka 533 (579)
+|.-+-.++.++..|...=+.++.|+-.|-... ....+++......+++|+.|+..+- +-||+|=+||..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 455566667777777777777888888877766 4556889999999999999998874 568888888865
Q ss_pred H
Q 008065 534 A 534 (579)
Q Consensus 534 A 534 (579)
.
T Consensus 108 l 108 (120)
T PF12325_consen 108 L 108 (120)
T ss_pred H
Confidence 4
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.67 E-value=55 Score=35.04 Aligned_cols=38 Identities=5% Similarity=0.018 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ 547 (579)
Q Consensus 510 IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcEl 547 (579)
..+++++=.-+.+....+-.++...+.|..+|...-++
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~ 411 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDL 411 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556677777777777777777664443
No 35
>PRK11637 AmiB activator; Provisional
Probab=85.38 E-value=54 Score=34.77 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=27.3
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 231 qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
+++..|..++.+...-...+..+.+++.....+|..++.++..+...+..++..|..
T Consensus 58 ~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555555555444444444444444433
No 36
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=85.23 E-value=35 Score=32.36 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008065 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAG 552 (579)
Q Consensus 473 lEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAG 552 (579)
.+...+...|...|+...+|+.--..+..++......|++++.+..-+....+.+...++ .|+.||..-=- .--
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k---~E~~rf~~~k~---~d~ 208 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIK---KELERFEKEKV---KDF 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHH
Confidence 444455556666666666666555566788999999999999999999999999987655 79999986433 333
Q ss_pred hhHHHHHH
Q 008065 553 RAVEQEFV 560 (579)
Q Consensus 553 kaveqEf~ 560 (579)
+.++..|.
T Consensus 209 k~~l~~~~ 216 (236)
T PF09325_consen 209 KSMLEEYA 216 (236)
T ss_pred HHHHHHHH
Confidence 45555553
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.76 E-value=16 Score=33.42 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=32.1
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhh
Q 008065 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK 245 (579)
Q Consensus 188 gv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~ 245 (579)
.-..++=.+|-+||.++|-....|...-.++-.-.|+ ...|...+.+|++.++.
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d----~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSD----IERLQNDVERLKEQLEE 84 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHH
Confidence 3345566788999999988777766655555444443 23455555444444433
No 38
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.71 E-value=74 Score=35.73 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=10.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 263 KVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 263 ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
.+..+..+...+...+.++...+..
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~ 446 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEE 446 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.32 E-value=97 Score=36.02 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (579)
Q Consensus 476 ~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELE 514 (579)
.||=.+|.++|-+.+.++..+-.|.+||.++...|.+|-
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999988764
No 40
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.59 E-value=58 Score=32.21 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=65.6
Q ss_pred HhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (579)
Q Consensus 202 ~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~ 281 (579)
..+...+..-.+++..|++|++...==+.+||..+.. -....+....-+.+-..++.-++.+.....++++.+
T Consensus 67 ~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~e-------a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 67 EEAEKRADESERARKVLENREQSDEERIEELEQQLKE-------AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555678899999999988888888888743 334445555555566666666666666777777777
Q ss_pred HHHhhchhhhchhhHHhhhhHHHHHH
Q 008065 282 EDKLKNLESHRPLLVDQLNYVSKIHD 307 (579)
Q Consensus 282 e~klk~~e~~r~lL~dql~~vs~ihd 307 (579)
+.+++.|+..=..+..+|+++..-.+
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77777777555555666665544433
No 41
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.38 E-value=14 Score=37.61 Aligned_cols=130 Identities=25% Similarity=0.279 Sum_probs=85.7
Q ss_pred cccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhc
Q 008065 160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (579)
Q Consensus 160 ~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~l 239 (579)
=|-+-.|+||..||...+|+...+.-.--++.-.+..|++|=+|||.. |+-+
T Consensus 94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E~--- 145 (233)
T PF04065_consen 94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAEI--- 145 (233)
T ss_pred HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH---
Confidence 345677999999999998887777766667777777777777776643 2222
Q ss_pred hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHH
Q 008065 240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII 313 (579)
Q Consensus 240 r~eva~k~s~~e~l~------ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi 313 (579)
|+|. +..+.+..++.+++.-+...+--|..||.-|+.|+.-. + .-.-|..|.+.|.-.|
T Consensus 146 -----------E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv 210 (233)
T PF04065_consen 146 -----------ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV 210 (233)
T ss_pred -----------HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence 2222 23446788888888888888888888888888877332 1 1145567888888888
Q ss_pred hhhcCCC-ccccccccccCC
Q 008065 314 KIVDDGN-LDQSGLSESLFL 332 (579)
Q Consensus 314 ~~vdd~k-~d~s~lsEs~f~ 332 (579)
+.=.+.- .+--.||+.+++
T Consensus 211 e~n~d~Df~ede~iYddl~L 230 (233)
T PF04065_consen 211 ESNQDPDFEEDEDIYDDLNL 230 (233)
T ss_pred HcCCCCcccchHhHhhccCC
Confidence 7633321 222345555554
No 42
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=80.31 E-value=0.54 Score=54.29 Aligned_cols=104 Identities=27% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHH
Q 008065 32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (579)
Q Consensus 32 ~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de 111 (579)
+.+|.++|+..-+++-.+|...-.++..++-|++-+.+.=+.+.++ -..+.+|..++.++..+-++
T Consensus 161 ~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el--------------~~~k~kL~~E~~eL~~qLee 226 (859)
T PF01576_consen 161 LDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL--------------TEQKAKLQSENSELTRQLEE 226 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444444444443333333333 33445677777777777666
Q ss_pred HHHHHHHHhhhhcC-------CccchhhhhhhhhhhhHHhhhhhh
Q 008065 112 VVKQLDEVTKARDG-------SRSQLDEVTKAKDGLRSEIENSAH 149 (579)
Q Consensus 112 ~~kq~d~~~~~r~~-------~~~~~~~~~~~~~~l~~ei~~s~~ 149 (579)
...++..+.+.+.. .+.+|++-++++..|.+.+.+.-+
T Consensus 227 ~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~ 271 (859)
T PF01576_consen 227 AESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEH 271 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHH
Confidence 66666666554433 444555666666666555544433
No 43
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.11 E-value=67 Score=32.00 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (579)
Q Consensus 456 Ev~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELE 514 (579)
+-.+|+..|.+.+.....++.+||-.|.++..-+..=-.+...-.+-+.+...++.+|.
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~ 233 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELS 233 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999999999999999999865443333333333333333333333333
No 44
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=80.02 E-value=16 Score=33.98 Aligned_cols=70 Identities=26% Similarity=0.475 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEEL--RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL---MLDIAAAEE 536 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEs--RsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeL---m~dIkaAEE 536 (579)
++|-..|++++.+|.+||.-+-.| ||+.++=.-| ..+.+...++-.|| .+|..| +.++|.+=.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mh-----rRlDElV~Rv~~lE-------s~~~~lk~dVsemKpVT~ 71 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMH-----RRLDELVERVTTLE-------SSVSTLKADVSEMKPVTD 71 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HhHHHHHHHHHHHH-------HHHHHHHhhHHhccchHH
Confidence 345567788888888888777655 5555543221 23334444444444 444444 445677789
Q ss_pred HHHHHHH
Q 008065 537 EISRWKA 543 (579)
Q Consensus 537 Ei~RWKe 543 (579)
+|.|||-
T Consensus 72 dV~rwkl 78 (112)
T PF07439_consen 72 DVKRWKL 78 (112)
T ss_pred HHHHHHH
Confidence 9999984
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.63 E-value=70 Score=31.95 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=18.3
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 008065 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (579)
Q Consensus 231 qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~ 269 (579)
.-...+..+|+|+..-...+..|...+..-..+...|++
T Consensus 206 ~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 206 KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 334444445555555555555554444444444444444
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.16 E-value=1.2e+02 Score=33.81 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW 541 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RW 541 (579)
..+++-++.+...+.++...+.+.....+.++...+ +...++++++....=+.+.+.+|-.+...|..-+.+|
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le-------el~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE-------EILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555544433 3344445555555555667888888888888888888
Q ss_pred HHHHH
Q 008065 542 KAAAE 546 (579)
Q Consensus 542 KeAcE 546 (579)
+....
T Consensus 424 ~~~L~ 428 (569)
T PRK04778 424 RNKLH 428 (569)
T ss_pred HHHHH
Confidence 87644
No 47
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.93 E-value=68 Score=30.84 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=81.8
Q ss_pred hhHHHhhhchHHHhhhhh-hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 008065 231 ELEATISGLREEVAKKSS-FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (579)
Q Consensus 231 qLEasis~lr~eva~k~s-~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L 309 (579)
+.+.++..=++++|+.+- ....++..+..-...+......+..|+..+..++.+|.++..++..|.-+.+ +.+.+..+
T Consensus 73 ~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~ 151 (221)
T PF04012_consen 73 QAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKV 151 (221)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345556666788886653 3455666677777888888889999999999999999999999999988877 66777777
Q ss_pred HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHH
Q 008065 310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLT 356 (579)
Q Consensus 310 ~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa 356 (579)
...+..++.+... +.+..|++.+..--..+....+|.
T Consensus 152 ~~~~~~~~~~~a~----------~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 152 NEALASFSVSSAM----------DSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHhccCCccchH----------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777766633331 123346666665555566666655
No 48
>PRK09039 hypothetical protein; Validated
Probab=77.18 E-value=97 Score=32.70 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=53.4
Q ss_pred hhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhc---hheeeehhhhHHHhhhch-------HHHhhhhhhHHHHHHHHH
Q 008065 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRN---FEIAIEVSELEATISGLR-------EEVAKKSSFIENLEKSLI 258 (579)
Q Consensus 189 v~KR~neiveel~~Q~da~~ksrn~aReqmeqrn---y~iAIEVSqLEasis~lr-------~eva~k~s~~e~l~ks~~ 258 (579)
-..+..+.+.+|=.|++++...|.++..+..... -+.---..+|.+.+...+ -+|..=.+.++.|.+++.
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLA 154 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999888765221 011111222333333333 333333444455555555
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008065 259 EKDEKVAEIESQGLELRQLVNEYEDKLK 286 (579)
Q Consensus 259 eke~ki~ele~E~~~Lk~~v~e~e~klk 286 (579)
.-+..|.+.+....+.+.+++.|...|.
T Consensus 155 ~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 155 ALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555543
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.72 E-value=61 Score=33.57 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=35.3
Q ss_pred eehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 227 IEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
.++..|-+.++-+..+++.+...+..|...+...+.+|.++..+...+...|.+++..+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666666666655555555555555554443
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.32 E-value=2.1e+02 Score=35.29 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=83.0
Q ss_pred hchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhh
Q 008065 221 RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (579)
Q Consensus 221 rny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~ 300 (579)
|--+.--+|+-|++.+..++.++.+..+-+......+..-+.++.++...+.+++..+.+-+..+..-+.--..|.+.+.
T Consensus 288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~ 367 (1174)
T KOG0933|consen 288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQ 367 (1174)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 55566778899999999999999999999999988888889999988888888888888877777666666667777777
Q ss_pred hHHHHHHHHHHHHhhhcCCCc
Q 008065 301 YVSKIHDQVDDIIKIVDDGNL 321 (579)
Q Consensus 301 ~vs~ihd~L~~vi~~vdd~k~ 321 (579)
-.++....-.+.+..|..+..
T Consensus 368 ~~s~~~e~~e~~~eslt~G~S 388 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGLS 388 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 788888777777777776644
No 51
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.88 E-value=16 Score=41.44 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCc
Q 008065 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (579)
Q Consensus 249 ~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~ 321 (579)
..-.+.-++...+..+.+|+.+...+...+..+...+.++...+.-|=.|..++.+=.+.|..+++..|.+..
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~ 430 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEET 430 (722)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3334455556667777777777777888888888887777766666666777777777777777777776543
No 52
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.57 E-value=70 Score=29.34 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=37.1
Q ss_pred HHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 008065 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (579)
Q Consensus 213 ~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e 282 (579)
-+|+-|..|+ .+..++..++..+ +++.+..+.|..+-..+.++|..++.++..+.+.+....
T Consensus 104 s~k~~l~~R~-~~~~~~~~~~~~l-------~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~ 165 (218)
T cd07596 104 AVKETLDDRA-DALLTLQSLKKDL-------ASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEAR 165 (218)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3666777776 6666677777776 666666666655444455666655555555554444443
No 53
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.40 E-value=1.1e+02 Score=32.35 Aligned_cols=76 Identities=20% Similarity=0.359 Sum_probs=50.1
Q ss_pred hhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHh
Q 008065 290 SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQK 369 (579)
Q Consensus 290 ~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~ 369 (579)
..=|.|++-|..++.+|...-++...+.. +|......-..++.--.+-..|..++..-++.
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~-------------------le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~ 372 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSE-------------------LESQQSDLQSQLKKWEELLNKVEEKFKENMET 372 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888877762 22222222333444444555777777777777
Q ss_pred hHHHHhhHHHHHHHH
Q 008065 370 KSREVKSLNEAVGQL 384 (579)
Q Consensus 370 k~kE~k~Le~sV~~L 384 (579)
-...++.|+..|..|
T Consensus 373 i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 373 IEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777777777777654
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.48 E-value=2.6e+02 Score=34.55 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHH
Q 008065 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE----KERIANESVEGLMLDIAAAE 535 (579)
Q Consensus 470 ~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEE----rErvl~enVEeLm~dIkaAE 535 (579)
.|+.|..+++..+.+-.-+-++.+.-.-.=.+.|.....+|+.|.. +=.++-.||-.|+..|.-.=
T Consensus 419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~ 488 (1074)
T KOG0250|consen 419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRK 488 (1074)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHH
Confidence 3333333333333333333333433333445566666777777763 44555678888888886543
No 55
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.46 E-value=68 Score=33.72 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=62.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 008065 455 DEIYNLAGALENIVKASQLEIVELRHSVEELR----AESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD 530 (579)
Q Consensus 455 dEv~SLAsalEniMK~sqlEI~eLrhsLEEsR----sEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~d 530 (579)
.-+.++.-.+.+....++.|+.+|+....+.. .+...++.-+..+-++|......+.+++.+=.=++..|+.....
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888899999999999999974 48888888888888888888888888887655555555555544
Q ss_pred HHHHHHHH
Q 008065 531 IAAAEEEI 538 (579)
Q Consensus 531 IkaAEEEi 538 (579)
+.+..++|
T Consensus 248 k~e~~~~I 255 (312)
T smart00787 248 KSELNTEI 255 (312)
T ss_pred HHHHHHHH
Confidence 44444444
No 56
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=70.47 E-value=2.9e+02 Score=34.73 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=40.3
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh
Q 008065 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (579)
Q Consensus 253 l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~v 316 (579)
+..+.++.+.++++.+.+-..|...+..++..|+++...+.-+.+-+..|.+....|..-..-.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM 555 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 3455566666666666666666666667777776666666666666666666666666444333
No 57
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.84 E-value=1.3e+02 Score=30.52 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ 547 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcEl 547 (579)
+++++.++.+|.....+.+.+++.+..- .+=|.++...+..|..=.+...+-+=.+-.||-..|-.|..=+..++.
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~e----e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENE----EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666665555544322 244555555555555444444333334467777777777777777766
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhh
Q 008065 548 EAAAGRAVEQEFVAQVCFLSCLRREQ 573 (579)
Q Consensus 548 EveAGkaveqEf~~q~~~l~~~~~~~ 573 (579)
-...-.....|+..-....+.+|++.
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788888888889998873
No 58
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.19 E-value=33 Score=29.05 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhH
Q 008065 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (579)
Q Consensus 252 ~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~v 302 (579)
+|++-+.+||+.|+.|-.|+..|-...-.+..-++.|..+..-+-.++.-+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999988888887777777666666665555544444433
No 59
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.92 E-value=1.9e+02 Score=34.14 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhh-------------
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-------SHRMKRIEELEEKERIANES------------- 523 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeI-------a~~~~~IkELEErErvl~en------------- 523 (579)
+-+-+..++.|+.++|+.+.-.++|.++|.......-+.. .....-|+++-.||.=+-+-
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 008065 524 -----------VEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRREQYFL 576 (579)
Q Consensus 524 -----------VEeLm~dIkaAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~~~~~~~~~~ 576 (579)
+|||=.+|+-.+||+.=|+--.|.-+.=-.-+++.+..-|-+|..=|--.|-|
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~L 175 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNAL 175 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 60
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=68.54 E-value=1.6e+02 Score=33.47 Aligned_cols=83 Identities=25% Similarity=0.362 Sum_probs=64.7
Q ss_pred hhhhhhhHHHHHhhhhchheeee----hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065 206 ATAKSRNDVREQMEQRNFEIAIE----VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (579)
Q Consensus 206 a~~ksrn~aReqmeqrny~iAIE----VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~ 281 (579)
-|..+|.--|..+|+|...+-.+ .+.+=..|.++...|++=.+.++.+.+.+......-..+-.++..|++....+
T Consensus 13 nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 13 NTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999987666554 46677788888888888888888888888888777777777888888887777
Q ss_pred HHHhhch
Q 008065 282 EDKLKNL 288 (579)
Q Consensus 282 e~klk~~ 288 (579)
+.|-+-+
T Consensus 93 ~~k~~ll 99 (618)
T PF06419_consen 93 ELKKKLL 99 (618)
T ss_pred HHHHHHH
Confidence 6665433
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.82 E-value=2.3e+02 Score=32.53 Aligned_cols=161 Identities=25% Similarity=0.347 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhh
Q 008065 77 STRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE 156 (579)
Q Consensus 77 ~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~e 156 (579)
++--||..+|||.++---||+|-.=++.| ++|+.--+. |..+|.... .|+-
T Consensus 30 as~ir~sR~rEK~El~~LNDRLA~YIekV--------R~LEaqN~~-----------------L~~di~~lr----~~~~ 80 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQELNDRLAVYIEKV--------RFLEAQNRK-----------------LEHDINLLR----GVVG 80 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH-----------------HHHHHHHHH----hhcc
Confidence 34568889999999988888888777655 334331111 444544322 2211
Q ss_pred hhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHh
Q 008065 157 KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236 (579)
Q Consensus 157 kis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasi 236 (579)
+-.|+.|. +|. .=++ .+-+-+|-|++.|-.+. |++..|...+
T Consensus 81 ---~~ts~ik~----------~ye--------~El~------~ar~~l~e~~~~ra~~e-----------~ei~kl~~e~ 122 (546)
T KOG0977|consen 81 ---RETSGIKA----------KYE--------AELA------TARKLLDETARERAKLE-----------IEITKLREEL 122 (546)
T ss_pred ---CCCcchhH----------Hhh--------hhHH------HHHHHHHHHHHHHHHHH-----------HHHHHhHHHH
Confidence 11122222 222 1111 12334555666665443 3455555555
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHH
Q 008065 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (579)
Q Consensus 237 s~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ 304 (579)
-.||--+.++...+..-...+.+-...++.++-|..-++-++..+|+.++.+..+..=|.++|+.+.+
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555555555555566677778888888899999999999998888888888888777765
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.56 E-value=61 Score=32.25 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~R 540 (579)
+..++.++.+|+..|.+.+.++. ..+.+-.++++.....|.+|+++-.=+.+-++.+-.++..++.+..+
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888876644 56666677788888889999998888888888888888777776654
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.02 E-value=2.4e+02 Score=32.41 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 008065 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (579)
Q Consensus 269 ~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vd 317 (579)
.+...|++.+..++..+..-+.+.-+|.+-|..+..+.|....-+...-
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aR 331 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQAR 331 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555777777788777777778888888888888888877665555443
No 64
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=65.96 E-value=60 Score=38.30 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---hhHhHHHHHHHhhHH--------HHHHHHhhhhhhHHHHHH-----HHHHHH
Q 008065 26 DFSVERFREVLAELNRERQAREAAE---NSATELSEKFNRLKA--------LAHESIKRRDESTRQRDE-----ALREKE 89 (579)
Q Consensus 26 ~~s~~~~~~l~ael~~er~ar~aae---~s~~e~~~~f~rlka--------la~ea~kkrde~~r~rd~-----a~r~ke 89 (579)
-+--+.+..|-.|.|.|=-+-=.+. ..+.-|..-|.+-|+ |...+-+=.+|+...=.+ .+++|-
T Consensus 458 ~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kl 537 (762)
T PLN03229 458 LALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKL 537 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 3556777777778887643322221 112222223444344 444466667788777777 789999
Q ss_pred HHhhhcch---hhHHHHHHhhhHHHHHHHHHHHhh
Q 008065 90 EILRSNDK---LSTEIAEVNIAKDEVVKQLDEVTK 121 (579)
Q Consensus 90 ~~~~~~~~---~s~~l~~v~~~~de~~kq~d~~~~ 121 (579)
++|++--+ +|.--.....-++++-|+|.++..
T Consensus 538 e~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~ 572 (762)
T PLN03229 538 DMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMD 572 (762)
T ss_pred HHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcc
Confidence 99988766 443333466667888888888443
No 65
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.42 E-value=1.3e+02 Score=29.29 Aligned_cols=106 Identities=22% Similarity=0.434 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhhhhhh--------hhhHHHHHhhhhchheeeehhhhHHHhh-hchHHHhhhhhhHHHHHHHHHHhHHHH
Q 008065 194 NEIVEELVGQIDATAK--------SRNDVREQMEQRNFEIAIEVSELEATIS-GLREEVAKKSSFIENLEKSLIEKDEKV 264 (579)
Q Consensus 194 neiveel~~Q~da~~k--------srn~aReqmeqrny~iAIEVSqLEasis-~lr~eva~k~s~~e~l~ks~~eke~ki 264 (579)
+.+.+||+||+-.--. =||+.+.-+.. | ....+.++. |.|.-+.. + ....+.+.+|
T Consensus 65 ~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~--y-----~~l~~s~~~f~~rk~l~~-----e---~~~~~l~~~i 129 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDA--Y-----QTLYESSIAFGMRKALQA-----E---QGKQELEEEI 129 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHH
Confidence 4567999999987544 44554433332 2 233444443 33332222 1 1123334445
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchh--------hhchhhHHhhhhHHHHHHHHHHHHh
Q 008065 265 AEIESQGLELRQLVNEYEDKLKNLE--------SHRPLLVDQLNYVSKIHDQVDDIIK 314 (579)
Q Consensus 265 ~ele~E~~~Lk~~v~e~e~klk~~e--------~~r~lL~dql~~vs~ihd~L~~vi~ 314 (579)
+.++.+...|...+.++..+...++ ...+...+.++++.+...+|.+-++
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544455544444444443322 3345556666666666666655544
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.42 E-value=73 Score=31.55 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=39.8
Q ss_pred hHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 008065 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275 (579)
Q Consensus 212 n~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk 275 (579)
+.++.+-.++-=+++=|-.+|.+.+..+..++..-....+.+++.+...+.+++++++++..+.
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343444444555667777777777777777777777777777777777776666444444
No 67
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.73 E-value=84 Score=28.58 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 008065 196 IVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (579)
Q Consensus 196 iveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele 268 (579)
.++.++.+.+. .+.-+..++.+-..|-++|=..-.++..+..+|.++..+......|..+...+..+...+.
T Consensus 18 ~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 18 KLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555 3445566777777777777777777888888888888888888888777777776666443
No 68
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.57 E-value=3.6e+02 Score=32.95 Aligned_cols=75 Identities=28% Similarity=0.349 Sum_probs=56.0
Q ss_pred chhHHHHHHHHhhhh---hhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 008065 192 RTNEIVEELVGQIDA---TAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (579)
Q Consensus 192 R~neiveel~~Q~da---~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele 268 (579)
--|+-|+++=+|.+. -+.+-.++-++|+|----..+|+-+|.-+++.+...-+...+..+++ +.+||...+++-
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~---l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDL---LKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHH
Confidence 345666666666555 55666677788888777778889999999999999988888888888 677777666543
Q ss_pred H
Q 008065 269 S 269 (579)
Q Consensus 269 ~ 269 (579)
.
T Consensus 547 ~ 547 (980)
T KOG0980|consen 547 A 547 (980)
T ss_pred H
Confidence 3
No 69
>PRK12704 phosphodiesterase; Provisional
Probab=61.68 E-value=75 Score=35.48 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=17.2
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~ 269 (579)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...++
T Consensus 84 L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~ 124 (520)
T PRK12704 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333444444444444444444444443333
No 70
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.24 E-value=1.1e+02 Score=30.43 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dI 531 (579)
..+..-...+..+|.+|...++-++....+|+..+..|.++|+....+|..++.-.+-+.--+......+
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777778888888888888899999999999999999999999877665555444433333
No 71
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.47 E-value=4.1e+02 Score=32.89 Aligned_cols=279 Identities=21% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHH---HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHH-----
Q 008065 32 FREVLAELNRERQAREAAENSATELSE---KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----- 103 (579)
Q Consensus 32 ~~~l~ael~~er~ar~aae~s~~e~~~---~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----- 103 (579)
+++|..+|+-=|..|.---.-+-|++. .|.-|-.|---.+-+--++.|+--.+-.+++++.-..++.-.++.
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~ 312 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADA 312 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCC
Q 008065 104 --------EVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPR 175 (579)
Q Consensus 104 --------~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~ 175 (579)
+.-.-|-|.-.+==+.++. .+|+.+--++-|++|+++-
T Consensus 313 iEmaTldKEmAEERaesLQ~eve~lkE------r~deletdlEILKaEmeek---------------------------- 358 (1243)
T KOG0971|consen 313 IEMATLDKEMAEERAESLQQEVEALKE------RVDELETDLEILKAEMEEK---------------------------- 358 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc----------------------------
Q ss_pred CccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHH
Q 008065 176 SQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEK 255 (579)
Q Consensus 176 SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~k 255 (579)
-+|-|+..-|-.| |+||-| -.|--++.+|||=.|.-.-..-.+.|
T Consensus 359 ---G~~~~~~ss~qfk-------------------------qlEqqN-------~rLKdalVrLRDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 359 ---GSDGQAASSYQFK-------------------------QLEQQN-------ARLKDALVRLRDLSASEKQDHQKLQK 403 (1243)
T ss_pred ---CCCCcccchHHHH-------------------------HHHHHH-------HHHHHHHHHHHhcchHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh------------------------hhchhhHH---hhhhHHHHHHH
Q 008065 256 SLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE------------------------SHRPLLVD---QLNYVSKIHDQ 308 (579)
Q Consensus 256 s~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e------------------------~~r~lL~d---ql~~vs~ihd~ 308 (579)
-+--|-.++++|.+-.+.|...++..|.++-.|. ++=++|-+ +|--...|+++
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQ 483 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQ 483 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 008065 309 VDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (579)
Q Consensus 309 L~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kE 387 (579)
|.+.-+-+. ..|-|-+.. -.+-.-+-.+..-+.+++||++--++. |++.++-.=...+.++-..+.++.+|
T Consensus 484 L~Esn~ele------~DLreEld~-~~g~~kel~~r~~aaqet~yDrdqTI~-KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 484 LQESNRELE------LDLREELDM-AKGARKELQKRVEAAQETVYDRDQTIK-KFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHH------HHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHH
No 72
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=60.06 E-value=1.8e+02 Score=33.10 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH-----RMKRIEELEEKERIANESVEGLMLDIAAAEEE 537 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~-----~~~~IkELEErErvl~enVEeLm~dIkaAEEE 537 (579)
-++++++|+|.=...-+..|.|||.|-+-||.-+ |+|-. ..+|+-++++|-+++.+-+| +=.-+-.-|+|
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlel----kK~k~nyv~LQEry~~eiQqKnksvsqclE-mdk~LskKeee 461 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLEL----KKIKANYVHLQERYMTEIQQKNKSVSQCLE-MDKTLSKKEEE 461 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHhhhHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhHHH
Confidence 3789999999999999999999999999888644 44433 36789999999999999876 22334556888
Q ss_pred HHHHHHHH-HHH
Q 008065 538 ISRWKAAA-EQE 548 (579)
Q Consensus 538 i~RWKeAc-ElE 548 (579)
|-|...-= ++|
T Consensus 462 verLQ~lkgelE 473 (527)
T PF15066_consen 462 VERLQQLKGELE 473 (527)
T ss_pred HHHHHHHHHHHH
Confidence 88876543 444
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.48 E-value=3.3e+02 Score=31.40 Aligned_cols=88 Identities=27% Similarity=0.355 Sum_probs=57.5
Q ss_pred HhhhhhhhhhhHH---HHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 008065 202 GQIDATAKSRNDV---REQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (579)
Q Consensus 202 ~Q~da~~ksrn~a---Reqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v 278 (579)
.|++-+-+-+++. ..+++..+-+.-++|.+|++.+...+++...-....+.+..+......+...|..+-.+++++|
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555665553 4456666666667778888888777777777666666666655555555666666666677777
Q ss_pred HHHHHHhhchh
Q 008065 279 NEYEDKLKNLE 289 (579)
Q Consensus 279 ~e~e~klk~~e 289 (579)
.+|+..+.++.
T Consensus 223 ~~LEedi~~l~ 233 (546)
T PF07888_consen 223 RELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHH
Confidence 77776665554
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.03 E-value=74 Score=29.69 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHhhchh
Q 008065 269 SQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 269 ~E~~~Lk~~v~e~e~klk~~e 289 (579)
..+..|++.|..++.+|..|.
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665555
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.79 E-value=35 Score=34.53 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL 513 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkEL 513 (579)
..+|+++..-..-..+|++.|+.++.|+..|+-.+|.+.-+|.+...+=++|
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888899999999999999999999999888887766655543
No 76
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.71 E-value=1.5e+02 Score=34.68 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008065 458 YNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (579)
Q Consensus 458 ~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E 497 (579)
+.--..++++++.++.||..|+.-+++.+.+.+.|+.-.+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667888888888888888888877777776665544
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.85 E-value=94 Score=29.01 Aligned_cols=82 Identities=27% Similarity=0.343 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL--EAQAKELSHRMKRIEELEEKERIANESVEGL-MLDIAAAEEEISR 540 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~--E~QaKeIa~~~~~IkELEErErvl~enVEeL-m~dIkaAEEEi~R 540 (579)
|..-...++.++.+|+..+-.++++..-|.... +.=...|.+++..|+.|+.|=.-+-.+-... -.++..++.+..+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~ 156 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKK 156 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 344455666666666666666666665555432 2334567777777787777766655543222 2477788888888
Q ss_pred HHHHH
Q 008065 541 WKAAA 545 (579)
Q Consensus 541 WKeAc 545 (579)
|+..+
T Consensus 157 ~~k~w 161 (169)
T PF07106_consen 157 WRKEW 161 (169)
T ss_pred HHHHH
Confidence 87654
No 78
>PRK09039 hypothetical protein; Validated
Probab=57.75 E-value=1.1e+02 Score=32.21 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----HH
Q 008065 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAA----EE 536 (579)
Q Consensus 461 AsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaA----EE 536 (579)
++.+++-+.+.+.++++.+..+.-++.++..|+.. |+.....|..+|.+..=....+++|-..|..+ =.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~ 190 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQ 190 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667766666666666666666654 67777777777777766666677776666655 23
Q ss_pred HHHHHHHHH
Q 008065 537 EISRWKAAA 545 (579)
Q Consensus 537 Ei~RWKeAc 545 (579)
|+.+||.-.
T Consensus 191 ~l~~~~~~~ 199 (343)
T PRK09039 191 ELNRYRSEF 199 (343)
T ss_pred HHHHhHHHH
Confidence 566666443
No 79
>smart00721 BAR BAR domain.
Probab=57.69 E-value=1.7e+02 Score=27.53 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred hhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 008065 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (579)
Q Consensus 189 v~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele 268 (579)
||.-........+..+..+.|-|+.+|-.|+.-. +.|+..- .. .++ ...+ ++.+.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~-------~kl~~~~----~~-~~~-----------~~~~-kl~~~e 176 (239)
T smart00721 121 FILPLLNFLLGEFKEIKKARKKLERKLLDYDSAR-------HKLKKAK----KS-KEK-----------KKDE-KLAKAE 176 (239)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-------HHHHHHH----Hh-ccC-----------Chhh-hhhhHH
Confidence 3444444555556677777777777777776321 1111110 00 000 0022 566666
Q ss_pred HhHHHHHHHHHHHHHHh----hchh---------hhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 008065 269 SQGLELRQLVNEYEDKL----KNLE---------SHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (579)
Q Consensus 269 ~E~~~Lk~~v~e~e~kl----k~~e---------~~r~lL~dql~~vs~ihd~L~~vi~~vd 317 (579)
.++...++.-+.+-..+ -.+- ....+..-|+.+...+++.|.++..-++
T Consensus 177 ~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 177 EELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66655555544432222 2222 2223344477788888888887776655
No 80
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.27 E-value=58 Score=31.27 Aligned_cols=68 Identities=31% Similarity=0.393 Sum_probs=41.5
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHH
Q 008065 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (579)
Q Consensus 230 SqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~d 297 (579)
++....|..|+.+++.-...+.+|.-.+.+|..-+..+.-|+..|.=-+..+|.+++.++.-+.-|++
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555666666666666666666667777777777777777777755555554
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.25 E-value=2.3e+02 Score=29.91 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=32.8
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
|..++-+.|...-.++..+...++.+...+.....+|.+...+..+++..|.+.+..+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666666666666666666655555555555555554443
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.14 E-value=91 Score=32.57 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=31.0
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHhhhhc--hheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhH
Q 008065 194 NEIVEELVGQIDATAKSRNDVREQMEQRN--FEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271 (579)
Q Consensus 194 neiveel~~Q~da~~ksrn~aReqmeqrn--y~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~ 271 (579)
+-+++.|=.|++.+.+.|+.-..-+.+=+ ....=++.+++..++.|..|...-..+.+.|++.-.+-+..+..++.|.
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776555443332 1112234556666666666666666666666666666666666666655
Q ss_pred HHHHHHH
Q 008065 272 LELRQLV 278 (579)
Q Consensus 272 ~~Lk~~v 278 (579)
..|.+.-
T Consensus 88 ~~l~~eE 94 (314)
T PF04111_consen 88 EELDEEE 94 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 83
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.94 E-value=55 Score=29.17 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhhHH
Q 008065 270 QGLELRQLVNEYEDKLKNLESHRPLLVD 297 (579)
Q Consensus 270 E~~~Lk~~v~e~e~klk~~e~~r~lL~d 297 (579)
++.+++-.+..+.+.++.+..+-.+|++
T Consensus 73 ~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 73 ELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 84
>PF13166 AAA_13: AAA domain
Probab=56.75 E-value=3.2e+02 Score=30.48 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=25.2
Q ss_pred hHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhh
Q 008065 184 AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQ 220 (579)
Q Consensus 184 avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeq 220 (579)
.-....+...|..+++.=..++.-.+..+.++.....
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777777777777777765543
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.35 E-value=64 Score=30.72 Aligned_cols=56 Identities=38% Similarity=0.465 Sum_probs=42.8
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK 284 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~k 284 (579)
++.+-..+.+|..|+..=+++-++|.+.+-.+.++|++|+.-.+.+...+...|..
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444555557777788889999999999999999998888777777777666654
No 86
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=54.81 E-value=2e+02 Score=30.04 Aligned_cols=128 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH----------HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcc
Q 008065 27 FSVERFREVLAELNRERQAREAAENSATELSE----------KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96 (579)
Q Consensus 27 ~s~~~~~~l~ael~~er~ar~aae~s~~e~~~----------~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~ 96 (579)
.-+.+|+.++.+|+.=...|..-+..+-+... ..+.++.+-++- |+.-+
T Consensus 192 ~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~e---------------------L~kf~ 250 (339)
T cd09238 192 SIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEE---------------------LKKYD 250 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHH---------------------HHHHh
Confidence 44788999999999888888776655533222 223333333332 33455
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhh----hhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhh---hhcccCCCCCCC
Q 008065 97 KLSTEIAEVNIAKDEVVKQLDEVTK----ARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK---ISGKVSNFKNFS 169 (579)
Q Consensus 97 ~~s~~l~~v~~~~de~~kq~d~~~~----~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ek---is~k~s~~k~f~ 169 (579)
.+.+.|.+-...-+.+.+++..+-. .+++ ...+++-+...+.|-.+..+ |...+.--..
T Consensus 251 ~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~------------~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~k-- 316 (339)
T cd09238 251 SVREAVSKNISSQDDLLSRLRALNEKFSQIFDV------------EGWRAATESHATQIRAAVAKYRELREGMEEGLR-- 316 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHH--
Confidence 5555555544444455555554322 2222 11223333444555544443 2332222223
Q ss_pred CCCCCCCccccCchhHHHHhhhchhHHH
Q 008065 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIV 197 (579)
Q Consensus 170 ~~~lP~SqKYtGl~avaygv~KR~neiv 197 (579)
-|++|.-++-++-+.+.+.|
T Consensus 317 --------FY~dL~~~~~~l~~~~~~fv 336 (339)
T cd09238 317 --------FYSGFQEAVRRLKQECEDFV 336 (339)
T ss_pred --------HHHHHHHHHHHHHHHHHHHH
Confidence 38899888888887777766
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=54.74 E-value=5.5e+02 Score=32.55 Aligned_cols=212 Identities=21% Similarity=0.251 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHH----HhhhcchhhHHHHHHhhhHHHH
Q 008065 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEE----ILRSNDKLSTEIAEVNIAKDEV 112 (579)
Q Consensus 37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~----~~~~~~~~s~~l~~v~~~~de~ 112 (579)
..++..-++...++.--.+++.-+.++|.-..+.-+ .+...+|-.. .+.++ .-..+.++++.+.+.....+.+
T Consensus 451 ~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~--ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 451 EKLDEKCQAVAELEEMDKELEETIEKLKSEESELQR-EQKALLQHEQ--KEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555556677777888888888877666554 2322222111 11111 1112345666666666666666
Q ss_pred HHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhc
Q 008065 113 VKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKR 192 (579)
Q Consensus 113 ~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR 192 (579)
++..+...-.-+.+-+-..+.--+.+.+++|+++..++...+ ++++ .+-|.=+. -+-++--+
T Consensus 528 q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~-----------~e~~------~~iq~~~e-~~~~~~d~ 589 (1317)
T KOG0612|consen 528 QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHS-----------KELS------KQIQQELE-ENRDLEDK 589 (1317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh-----------hhhh------HHHHHHhh-ccccHHHH
Confidence 666655433322211111112222334455555544443322 1110 00000000 00011111
Q ss_pred hhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 008065 193 TNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQ 270 (579)
Q Consensus 193 ~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E 270 (579)
-..+-+...+-.+...+-|+.+..--.++ -+|--++-.|++.|+.|....-.+.....+++--=.+..+.++..+++
T Consensus 590 l~~le~~k~~ls~~~~~~~~~~e~~~~~~-~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 590 LSLLEESKSKLSKENKKLRSELEKERRQR-TEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE 666 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222223333333333222222 234445667788888887777777777666655233334555555553
No 88
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.38 E-value=2.2e+02 Score=27.84 Aligned_cols=90 Identities=26% Similarity=0.330 Sum_probs=47.8
Q ss_pred CcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 008065 450 METEEDEIYNLAGALENIVKASQLEIVELRHSVEELR---AESSLLKEHLEAQAKELSHRMKRIEELEEKERIA----NE 522 (579)
Q Consensus 450 ~~~eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsR---sEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl----~e 522 (579)
++..-.-...-...+...+..++.+|.+|+..++... .++ ..+. ..-.++.+....++.|...-.-. -+
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~---~eR~-~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES---EERE-ELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 5555555555566666667777777777777777663 333 1111 12233444444444444332222 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 008065 523 SVEGLMLDIAAAEEEISRWKA 543 (579)
Q Consensus 523 nVEeLm~dIkaAEEEi~RWKe 543 (579)
.|+.+..++.-+=+.+.||-.
T Consensus 136 ~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666666643
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.11 E-value=1.4e+02 Score=33.29 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEE 537 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEE 537 (579)
++++-++..|.+|-++...+.+++-....|+..+..|.++|+..+..|.+.+..-.-+..++.++-.-|.+.+.+
T Consensus 35 a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 344778999999999999999999999999999999999999999999999999999999999998888887654
No 90
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=53.69 E-value=1.4e+02 Score=33.01 Aligned_cols=137 Identities=12% Similarity=0.257 Sum_probs=32.6
Q ss_pred hhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCC-CCCCCCCCc-------------cccCchhHH--HH--------
Q 008065 133 VTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNF-SAGGLPRSQ-------------KYTGLPAVV--YG-------- 188 (579)
Q Consensus 133 ~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f-~~~~lP~Sq-------------KYtGl~ava--yg-------- 188 (579)
.++-..+|+.+|.....+++.-+..+....++.-.. ++.|=|.++ .+.-+..+= .+
T Consensus 90 l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQl~~~ 169 (424)
T PF03915_consen 90 LSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQLYSE 169 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444566788888888877755555554444432211 111111111 111111110 12
Q ss_pred hhhchhHHHHHHHHhhhhh-----hhhhhHHHHH-------hhhhchheeeehhhhHHHhhhchHHHhhhhh-----hHH
Q 008065 189 VIKRTNEIVEELVGQIDAT-----AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLREEVAKKSS-----FIE 251 (579)
Q Consensus 189 v~KR~neiveel~~Q~da~-----~ksrn~aReq-------meqrny~iAIEVSqLEasis~lr~eva~k~s-----~~e 251 (579)
+-+.+++.+..+..|+.+- .-+-+-.|-. +..+...+-=-|..|+..|-.||.+|+.|-. -++
T Consensus 170 ~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle 249 (424)
T PF03915_consen 170 FQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLE 249 (424)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHH
Confidence 2234566677776666431 1111122333 3333333444588899999999999998743 455
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 008065 252 NLEKSLIEKDEKVAEIES 269 (579)
Q Consensus 252 ~l~ks~~eke~ki~ele~ 269 (579)
.+.+.+..-...|..++.
T Consensus 250 ~v~kdi~~a~~~L~~m~~ 267 (424)
T PF03915_consen 250 TVAKDISRASKELKKMKE 267 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554444
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=53.32 E-value=2.4e+02 Score=27.94 Aligned_cols=82 Identities=27% Similarity=0.312 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM--------------KRIEELEEKERIANESVEGLML 529 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~--------------~~IkELEErErvl~enVEeLm~ 529 (579)
=-.-++.++++|.+|++-+++++-|--.|+.+---|.+.|.++. --|.-|-++-|-.-...-.+-.
T Consensus 10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~ 89 (194)
T PF15619_consen 10 RLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELER 89 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456799999999999999999999999999999998886552 2344455555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 008065 530 DIAAAEEEISRWKAAA 545 (579)
Q Consensus 530 dIkaAEEEi~RWKeAc 545 (579)
.|+.++.|+.+-+..+
T Consensus 90 klk~~~~el~k~~~~l 105 (194)
T PF15619_consen 90 KLKDKDEELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666665554444
No 92
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=51.25 E-value=1.5e+02 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHH
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-SHRMKRIEELEEKERIANESVEG 526 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeI-a~~~~~IkELEErErvl~enVEe 526 (579)
.|.+.+..++..+......+.....-...++...+..-..| ......|.-|++++..+-..++.
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777777777777777777 45577788888888877666655
No 93
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.98 E-value=1.2e+02 Score=33.76 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=20.8
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE 273 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~ 273 (579)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...++++..
T Consensus 78 L~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee 122 (514)
T TIGR03319 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDE 122 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333444455555555555555554444444443333
No 94
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=50.88 E-value=5.9e+02 Score=31.82 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 264 VAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 264 i~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
...++.+...+.+.+.+++..+..++
T Consensus 553 ~~~l~~~~~~l~e~~~el~~e~~~~e 578 (1353)
T TIGR02680 553 RAALRLAEEVLEEERDALRTERERLE 578 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444456667777777777766555
No 95
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.64 E-value=4.5e+02 Score=30.33 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=32.2
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHhhHHHHh----------------hHHHHHHHHHHhhhhHHHHHH
Q 008065 346 LAGMESIYQLTRIVVEKTRDLVQKKSREVK----------------SLNEAVGQLVKEKEHIVSLLR 396 (579)
Q Consensus 346 l~~~ksI~eLa~eV~~K~~~~~E~k~kE~k----------------~Le~sV~~L~kEnedI~sLLR 396 (579)
+..++.+.+-.+.+...+..+.+.-++-.. +.-+.|...-|.+.||...|.
T Consensus 446 ~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 446 LQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566666666666666666666555433322 333667777788888877665
No 96
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.99 E-value=5e+02 Score=30.65 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=28.7
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 008065 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (579)
Q Consensus 238 ~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e 280 (579)
-|++.+.+=...++.|.+...+|-..+.++..+...|-..++.
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677777777888888777777777777666644444444333
No 97
>PRK04406 hypothetical protein; Provisional
Probab=49.56 E-value=1.1e+02 Score=26.18 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (579)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEE 515 (579)
++++..+..-|.+|.-.+.-.=--++.|-..+-.|-++|..++.+++.|=+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566665555555555556666666666666666666666633
No 98
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.76 E-value=54 Score=29.14 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=42.8
Q ss_pred eeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHh---HHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 225 IAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 225 iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~ek---e~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
||-|+.-||..|+..|..+. .+++.+--. ...-..+++|+..++..+..||.+|+.|.
T Consensus 3 V~~eId~lEekl~~cr~~le-------~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLE-------AVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------HHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56678888888888877653 333333322 23344588999999999999999999998
No 99
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.74 E-value=40 Score=32.31 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=43.5
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 234 asis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
+....||+++..|..+...|.-+-.-.+++|..+.+|+..|++++.+.-.++
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999999988878889999999999999999888765544
No 100
>PRK12704 phosphodiesterase; Provisional
Probab=47.52 E-value=2.6e+02 Score=31.36 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=12.6
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhc
Q 008065 137 KDGLRSEIENSAHMLVTGIEKISG 160 (579)
Q Consensus 137 ~~~l~~ei~~s~~mL~sg~ekis~ 160 (579)
.+.++.++.....=...-+++|+|
T Consensus 126 Le~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 126 LEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555554445555565554
No 101
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=47.38 E-value=2.6e+02 Score=31.30 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=11.2
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhc
Q 008065 137 KDGLRSEIENSAHMLVTGIEKISG 160 (579)
Q Consensus 137 ~~~l~~ei~~s~~mL~sg~ekis~ 160 (579)
.+.+..+......-...-+|+|+|
T Consensus 120 Lee~~~e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 120 LDEKEEELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444555544
No 102
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=47.23 E-value=3.9e+02 Score=28.63 Aligned_cols=143 Identities=20% Similarity=0.262 Sum_probs=96.0
Q ss_pred cccCCCCCCCCCC--CCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhh
Q 008065 160 GKVSNFKNFSAGG--LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237 (579)
Q Consensus 160 ~k~s~~k~f~~~~--lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis 237 (579)
....+..|+|++. -|.+-+|..-...---....|++.+..--+.+..+..=|.....-+.|=--.+ -.|-.++=.
T Consensus 171 ~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl---~~Q~~~vn~ 247 (384)
T PF03148_consen 171 TQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDL---RAQADAVNA 247 (384)
T ss_pred HHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4566788988865 57776666222233446778888888888888888777766544433321111 123333334
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh------hhch---hhHH--hhhhHHHH
Q 008065 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE------SHRP---LLVD--QLNYVSKI 305 (579)
Q Consensus 238 ~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e------~~r~---lL~d--ql~~vs~i 305 (579)
.|+.-++.--..-..|+-.+..-...|+++++++..|++-|..-++-|+=+. .+|| +-.| |.+++.-|
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEV 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH
Confidence 4555555555666678888888899999999999999999999998887655 7888 5555 55554443
No 103
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.55 E-value=2.8e+02 Score=26.73 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHh
Q 008065 538 ISRWKAAAEQEAAA 551 (579)
Q Consensus 538 i~RWKeAcElEveA 551 (579)
|.||-.-...||++
T Consensus 178 v~Rwm~~k~~eAe~ 191 (194)
T PF08614_consen 178 VERWMQRKAQEAER 191 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67888777777764
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=45.03 E-value=5.4e+02 Score=29.69 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHH
Q 008065 194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENL 253 (579)
Q Consensus 194 neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l 253 (579)
.+-|+.|=..++++....-.--.|++.+.-..-=|+-.|....+....+..++...+..+
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~ 452 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKEL 452 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344566677778888877777888887665444444444444444444444444444444
No 105
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=44.72 E-value=1.7e+02 Score=25.80 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------------HHH
Q 008065 458 YNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKEL-------------------------------SHR 506 (579)
Q Consensus 458 ~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeI-------------------------------a~~ 506 (579)
......+..-+..++..|.+|..++.+.+.=.+-|..+.....+++ -..
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~ 84 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDA 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecH
Confidence 3345566677777777777777777777666666655543312221 112
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065 507 MKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (579)
Q Consensus 507 ~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE 546 (579)
..-++-|+.|-..+..+++.|..++....++++.|....+
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346778888888888888888888888888888877654
No 106
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=43.85 E-value=3.5e+02 Score=28.31 Aligned_cols=90 Identities=27% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
...+..++.++..++..|++...+++.|-..+..+..+..+....+...| ..+.....||..=+..
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee--------------~~~~~~~~ei~~~~~~ 79 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEE--------------EEAEKQAKEIEEIKEE 79 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------------HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhh
Q 008065 545 AEQEAAAGRAVEQEFVAQVCFLSC 568 (579)
Q Consensus 545 cElEveAGkaveqEf~~q~~~l~~ 568 (579)
|+.+.+...-+..+-...|..|++
T Consensus 80 a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 80 AEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
No 107
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=43.84 E-value=5.2e+02 Score=29.10 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=47.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhh
Q 008065 67 AHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN 146 (579)
Q Consensus 67 a~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~ 146 (579)
+....+.+-+|.||-.-||-||- +| .|.||-..|+|++--|. .+.+++++.-
T Consensus 330 qareaklqaec~rQ~qlaLEEKa-aL-------------rkerd~L~keLeekkre--------------leql~~q~~v 381 (442)
T PF06637_consen 330 QAREAKLQAECARQTQLALEEKA-AL-------------RKERDSLAKELEEKKRE--------------LEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHh
Confidence 33445899999999999999984 33 46677777777774444 5667777777
Q ss_pred hhhhhhhhhhhhhcccCCCC
Q 008065 147 SAHMLVTGIEKISGKVSNFK 166 (579)
Q Consensus 147 s~~mL~sg~ekis~k~s~~k 166 (579)
..+-|-+-|. +|..|..
T Consensus 382 ~~saLdtCik---aKsq~~~ 398 (442)
T PF06637_consen 382 KTSALDTCIK---AKSQPMT 398 (442)
T ss_pred hhhHHHHHHH---hccCCCC
Confidence 7776766643 5555553
No 108
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.63 E-value=3.9e+02 Score=27.56 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhhHH
Q 008065 270 QGLELRQLVNEYEDKLKNLESHRPLLVD 297 (579)
Q Consensus 270 E~~~Lk~~v~e~e~klk~~e~~r~lL~d 297 (579)
+-.++++.++.++.+|.+++....-|+.
T Consensus 55 eF~Emkey~d~L~~~L~~ieki~~Rl~k 82 (243)
T cd07666 55 EFTEMNEYVEAFSQKINVLDKISQRIYK 82 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3448899999998888777744444443
No 109
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.63 E-value=2.2e+02 Score=24.81 Aligned_cols=68 Identities=21% Similarity=0.352 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008065 466 NIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (579)
Q Consensus 466 niMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKe 543 (579)
-.+-.++.|+..+-+.+--.++..+-+..-+..|.+++...+..+-+||..-+-+- ..-|+||+|-|.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----------~~YEeEI~rLr~ 71 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----------QQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45667788888888888888888888888899999999999999999996544332 234888888774
No 110
>PRK14140 heat shock protein GrpE; Provisional
Probab=43.27 E-value=2.5e+02 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 262 ~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
.+|.+++.+..+|+++.--+-+.+.|+.
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444444444
No 111
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.97 E-value=7.8e+02 Score=30.90 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=81.3
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh---hhchhhHHhhhhHHHHHH
Q 008065 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE---SHRPLLVDQLNYVSKIHD 307 (579)
Q Consensus 231 qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e---~~r~lL~dql~~vs~ihd 307 (579)
-+|+.|.-+-++|....+.+.++...+..++..|...-.+.......+...+.+++..+ ..||-|...---++.++.
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Confidence 46889999999999999999999888888888777666566666666666666664433 224444433222222222
Q ss_pred HHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 008065 308 QVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (579)
Q Consensus 308 ~L~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kE 387 (579)
.| ...+.=.+=++.-..+...+++..++++..++-.-..+.+|
T Consensus 304 rl-------------------------------------~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~feke 346 (1141)
T KOG0018|consen 304 RL-------------------------------------EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKE 346 (1141)
T ss_pred HH-------------------------------------HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222233344555677788888888888888777777777
Q ss_pred hhhHHH
Q 008065 388 KEHIVS 393 (579)
Q Consensus 388 nedI~s 393 (579)
-+++.-
T Consensus 347 i~~~~q 352 (1141)
T KOG0018|consen 347 IEERSQ 352 (1141)
T ss_pred HHHHHh
Confidence 666543
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=42.82 E-value=2.9e+02 Score=25.95 Aligned_cols=101 Identities=23% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---H
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKE---LSHRMKRIEELEEKERIANESVEGLMLDIAAAE---E 536 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKe---Ia~~~~~IkELEErErvl~enVEeLm~dIkaAE---E 536 (579)
..|+-+..++..+..|...|+........++..++.=.+. .-.+.++|.-||+.=--+..++...+.-+..+. +
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455566666666666666666666666666555544432 334677777777655444444444444444333 3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008065 537 EISRWKAAAEQEAAAGRAVEQEFVAQV 563 (579)
Q Consensus 537 Ei~RWKeAcElEveAGkaveqEf~~q~ 563 (579)
+.-|+..+.+.+...=-.=..++..++
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455666666655544333333444333
No 113
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=42.73 E-value=61 Score=30.66 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.6
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk 286 (579)
++-|.|.|..+|..+...-..+..|+..+..||.+|. .||..++++...-+
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~-------~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEID-------RLREKLDELNRANK 125 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4557888888888888888889999999999999998 55555555544433
No 114
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=42.29 E-value=3e+02 Score=25.95 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=28.7
Q ss_pred hhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 008065 206 ATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVN 279 (579)
Q Consensus 206 a~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~ 279 (579)
+|.|+=.+|...+-+ -+-++=++|+.-|.++..| +++|..++-+-.+-...+..+|.+++..+.
T Consensus 36 vTrr~m~~A~~~v~k-------ql~~vs~~l~~tKkhLsqR---Id~vd~klDe~~ei~~~i~~eV~~v~~dv~ 99 (126)
T PF07889_consen 36 VTRRSMSDAVASVSK-------QLEQVSESLSSTKKHLSQR---IDRVDDKLDEQKEISKQIKDEVTEVREDVS 99 (126)
T ss_pred HHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 555555555543322 2334455666666666544 344444444433333333333333333333
No 115
>PRK00106 hypothetical protein; Provisional
Probab=42.20 E-value=4e+02 Score=30.46 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=13.1
Q ss_pred hhhhhHHhhhhhhhhhhhhhhhhc
Q 008065 137 KDGLRSEIENSAHMLVTGIEKISG 160 (579)
Q Consensus 137 ~~~l~~ei~~s~~mL~sg~ekis~ 160 (579)
.+..+.++.....-...-+++|+|
T Consensus 141 Lee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 141 IDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555555555555666654
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.20 E-value=5.6e+02 Score=29.02 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=42.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008065 454 EDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHL---------EAQAKELSHRMKRIEELEEKERIANESV 524 (579)
Q Consensus 454 edEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~---------E~QaKeIa~~~~~IkELEErErvl~enV 524 (579)
..++..+...+.++....+..+.+|...+.+...+...+..-+ ...-+++.+....|.+++..-.-+.+..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 372 GSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566655556666666666555555555444432 1122333333444444444444444445
Q ss_pred HHHHHHHHHHHHHHHH
Q 008065 525 EGLMLDIAAAEEEISR 540 (579)
Q Consensus 525 EeLm~dIkaAEEEi~R 540 (579)
+.+...|...+.++.+
T Consensus 452 ~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 452 ETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554433
No 117
>PRK03918 chromosome segregation protein; Provisional
Probab=41.92 E-value=5.9e+02 Score=29.18 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008065 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEA 498 (579)
Q Consensus 465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~ 498 (579)
++.+..+..++.++...++........|....+.
T Consensus 665 ~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 118
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.80 E-value=3e+02 Score=25.77 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAc 545 (579)
+..++.-+.+|.+.+++.+.....+......+...........+..+++-..+.+++..+..++.....++.+=+..+
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~ 160 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEV 160 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444455556666666666666666666666664333333333
No 119
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=41.62 E-value=3.9e+02 Score=27.01 Aligned_cols=118 Identities=25% Similarity=0.273 Sum_probs=83.1
Q ss_pred hhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhch
Q 008065 144 IENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNF 223 (579)
Q Consensus 144 i~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny 223 (579)
+++|.+=|...++|.-+-+++|+.. +..|. |-+.+.++-|-.+-...-.=+.-|-++++.-|-
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~N----------EE~Lk-------k~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe 150 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKKN----------EETLK-------KCIEEYEERLKKEEQRYQALKAHAEEKLEKANE 150 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHh----------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888877762 11222 223344444433333333334556799999999
Q ss_pred heeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 224 EIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 224 ~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
+|+=-.++..+-+.+|+--+-+--.-+.+|+++|..|..... +|-..|++|=.++
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~-------ELtkICDeLI~k~ 205 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENE-------ELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 999989999999999998888888899999999999988887 6666777774443
No 120
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.55 E-value=3.4e+02 Score=26.38 Aligned_cols=74 Identities=28% Similarity=0.437 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh---hhhHHHHHHHHHHHHHHHHHHH
Q 008065 471 SQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL----EEKERIAN---ESVEGLMLDIAAAEEEISRWKA 543 (579)
Q Consensus 471 sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkEL----EErErvl~---enVEeLm~dIkaAEEEi~RWKe 543 (579)
.+..+.+++..+...+..+..|+..++.+.+.|.....+|.++ +.+...+. ..++.....+.....++..|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQ 133 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666553 33333332 3345555555555556665555
Q ss_pred H
Q 008065 544 A 544 (579)
Q Consensus 544 A 544 (579)
-
T Consensus 134 ~ 134 (302)
T PF10186_consen 134 R 134 (302)
T ss_pred H
Confidence 4
No 121
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.73 E-value=4e+02 Score=29.39 Aligned_cols=62 Identities=27% Similarity=0.232 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008065 459 NLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA 520 (579)
Q Consensus 459 SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl 520 (579)
.|=..++..|.+++-++..|++-=|+++...-+|..-.+.=.|+.......|.=|-.+.+-+
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34556777888888888888888888877666665444444444444444455555554443
No 122
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.52 E-value=1.6e+02 Score=28.07 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=48.9
Q ss_pred cCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHH
Q 008065 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIE 259 (579)
Q Consensus 180 tGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~e 259 (579)
||..-..+-+|.|+--++-+++..-+.....+..+...-+.. -....++.++...+++.|.+.+..
T Consensus 107 sGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~--------------~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 107 SGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAA--------------EKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhhhHHHHHHHHHHHHH
Confidence 588888899999999999888877766555554443321111 011455566667777777777766
Q ss_pred hHHHHHHHHH
Q 008065 260 KDEKVAEIES 269 (579)
Q Consensus 260 ke~ki~ele~ 269 (579)
++..+..+.+
T Consensus 173 ~~~~~~~Lkk 182 (192)
T PF05529_consen 173 KEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHH
Confidence 6666654444
No 123
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=39.21 E-value=2.6e+02 Score=27.22 Aligned_cols=69 Identities=30% Similarity=0.434 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLM--------LDIAAAEEEIS 539 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm--------~dIkaAEEEi~ 539 (579)
|.+++.+|-+ --+.+|.|++.|+.-++.=-.++.+....+..|+.+++.+-..+=+.- .||+.|=+++.
T Consensus 11 ie~sK~qIf~---I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~ 87 (159)
T PF05384_consen 11 IESSKEQIFE---IAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAH 87 (159)
T ss_pred HHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH
Confidence 3444444444 457889999999998888888999999999999999998876653332 34555555443
No 124
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.16 E-value=2.1e+02 Score=23.34 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=49.4
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHHHHHHHH
Q 008065 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVD 310 (579)
Q Consensus 240 r~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e-~~r~lL~dql~~vs~ihd~L~ 310 (579)
.+++-++...+.++.. .+|...|.+++..+.++.+.|..+|..++++- +.|.-+...+..+..-.+.|-
T Consensus 5 ~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544432 58888999999999999999999999999997 777777777766665555443
No 125
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=39.06 E-value=2.2e+02 Score=27.15 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=30.9
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHH---hHHHHHHHHHHHHHHhhch
Q 008065 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIES---QGLELRQLVNEYEDKLKNL 288 (579)
Q Consensus 239 lr~eva~k~s~~e~l~ks~~eke~ki~ele~---E~~~Lk~~v~e~e~klk~~ 288 (579)
.+..+....+...+|..+|.+++..|..|.. -+.+|+..|..|..+.+..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~ 70 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTA 70 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666667777666666666 5566666666666666533
No 126
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=38.96 E-value=3.5e+02 Score=25.70 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHH---HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008065 457 IYNLAGALENIVK---ASQLEIVELRHSVEELR--AESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (579)
Q Consensus 457 v~SLAsalEniMK---~sqlEI~eLrhsLEEsR--sEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dI 531 (579)
+..|..++...|+ ..-.+|+++|.....++ .....+...-..-.+-+......++. --+--.++++..||.+|
T Consensus 50 i~~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~l~~~~e~--yP~Lka~~~~~~l~~~l 127 (186)
T PF04011_consen 50 IPNLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSRLLAVVEN--YPELKADENFQQLMAQL 127 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHHHHTT---HHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHc--CCccchhHHHHHHHHHH
Confidence 5566666666664 45566677776666332 12222222222222233333322221 12334677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008065 532 AAAEEEISRWKAAAEQEAAAGRAVEQEF 559 (579)
Q Consensus 532 kaAEEEi~RWKeAcElEveAGkaveqEf 559 (579)
.++|.+|+-+|..--.=|..==..+..|
T Consensus 128 ~~~E~~I~~aR~~YN~av~~yN~~i~~F 155 (186)
T PF04011_consen 128 EETENRIAAARRAYNDAVRDYNTAIRQF 155 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999987655444333333333
No 127
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.51 E-value=3e+02 Score=28.02 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=40.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchhhhch------------hhHHhhhhHHHHHHHHHHHHhhhcCCC
Q 008065 265 AEIESQGLELRQLVNEYEDKLKNLESHRP------------LLVDQLNYVSKIHDQVDDIIKIVDDGN 320 (579)
Q Consensus 265 ~ele~E~~~Lk~~v~e~e~klk~~e~~r~------------lL~dql~~vs~ihd~L~~vi~~vdd~k 320 (579)
-+++++...|+..|..|..+|+|+.+-+. .-.+-.+--++++....+|++.+..+-
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~ 186 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGL 186 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555788899999999999998883222 223345666788888888998887664
No 128
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.00 E-value=5e+02 Score=27.27 Aligned_cols=70 Identities=27% Similarity=0.319 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEE 537 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEE 537 (579)
.+.+..++..|.+.-.++..+...|..--+...++|...+...++|.+.|.-.-+..-.+-.+.-...+|
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677677777777777777777777888888877777766666666666666666555544
No 129
>PRK10698 phage shock protein PspA; Provisional
Probab=37.96 E-value=4.3e+02 Score=26.44 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 008065 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (579)
Q Consensus 188 gv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~el 267 (579)
|+.+|...||.-=+..+--..-+-...=.||.+ +++..+..+|..+|.=.+.--.+++.+..-...+...
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~----------em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~ 71 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQ----------EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW 71 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----------------------------------------hHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHH
Q 008065 268 ES----------------------------------------QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHD 307 (579)
Q Consensus 268 e~----------------------------------------E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd 307 (579)
++ .+..|+..+..++.++..++.++..|.-.......-+.
T Consensus 72 e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 72 QEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 008065 308 Q 308 (579)
Q Consensus 308 ~ 308 (579)
.
T Consensus 152 ~ 152 (222)
T PRK10698 152 V 152 (222)
T ss_pred H
No 130
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.60 E-value=7e+02 Score=28.85 Aligned_cols=97 Identities=21% Similarity=0.327 Sum_probs=52.0
Q ss_pred ccCCCcchhhHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHH
Q 008065 446 KANAMETEEDEIYNLAGALENIVK---ASQLEIVELRHSVEELRAESSLLKEHLEAQAK--------------ELSHRMK 508 (579)
Q Consensus 446 ~~~~~~~eedEv~SLAsalEniMK---~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaK--------------eIa~~~~ 508 (579)
+++....-+.|+.++...|+.+-+ .++.+|..|++.+.++|.-+....+....=-. ++.....
T Consensus 83 ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~kr 162 (546)
T KOG0977|consen 83 TSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKR 162 (546)
T ss_pred CcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHH
Confidence 444455667788888888877733 35556666666666655544444333222222 3444444
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 509 RIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEA 549 (579)
Q Consensus 509 ~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEv 549 (579)
+|+.||+. +-.|-.++.-...+|.|-|.....|.
T Consensus 163 r~~~le~e-------~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 163 RIKALEDE-------LKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHH-------HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44544444 44444444455555555565555555
No 131
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=37.35 E-value=3.2e+02 Score=24.88 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=52.7
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHh
Q 008065 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK 260 (579)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~ek 260 (579)
||-|+++.- ...++++++||+.=..+. ++++..++.---.+- ..++..+...++.. +..|++|++-+.++
T Consensus 13 GLGa~a~~~-ek~~k~~~~LVkkGe~~~---ee~k~~~~e~~~~~~---e~~~~~~~~~~~~~---~~~~~~le~~~~~~ 82 (118)
T TIGR01837 13 GIGALARVQ-EEGSKFFNRLVKEGELAE---KRGQKRFDESVDAAR---EEVKTALEQTRDQV---QRNWDKLEKAFDER 82 (118)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHH---HHHhhhHHHHHHHH---HhhHHHHHHHHHHH
Confidence 666666653 678999999998755443 455554432110000 22222232222222 23345555545443
Q ss_pred HHHHH-HH----HHhHHHHHHHHHHHHHHhhchh
Q 008065 261 DEKVA-EI----ESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 261 e~ki~-el----e~E~~~Lk~~v~e~e~klk~~e 289 (579)
=..+. .| .+++..|+.+|+.|+.+|..+.
T Consensus 83 v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 83 VEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 11 1288899999999999886654
No 132
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.33 E-value=3.6e+02 Score=25.71 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKe 543 (579)
+..||..-.-.|...+..+.....+..-|+.. |..+...|+.|.. -+..+|+|-..|.....+..-++.
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~q-------l~~~d~~i~~Lk~----~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKVKEERDNLKTQ-------LKEADKQIKDLKK----SAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 56778877778877888888777766666654 5666677777776 377899999999988888887777
Q ss_pred HHHHHHH
Q 008065 544 AAEQEAA 550 (579)
Q Consensus 544 AcElEve 550 (579)
..+.+..
T Consensus 73 ~~e~~l~ 79 (155)
T PF06810_consen 73 EYEAKLA 79 (155)
T ss_pred HHHHHHH
Confidence 7766654
No 133
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.01 E-value=7.4e+02 Score=28.96 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065 467 IVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (579)
Q Consensus 467 iMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE 546 (579)
++..+.++++.+--..+..|-+.+.+. .++..+|..+..++..|. -.++.+.-+.+--++++|-|..|-..+|+
T Consensus 461 ~l~~~~~el~~~~~~~~~~k~e~eee~---~k~~~E~e~le~~l~~l~---l~~~~~m~~a~~~v~s~e~el~~~~~~~~ 534 (581)
T KOG0995|consen 461 ILGEIELELKKAESKYELKKEEAEEEW---KKCRKEIEKLEEELLNLK---LVLNTSMKEAEELVKSIELELDRMVATGE 534 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443344444443332 345555655555555554 35666677777889999999999999999
Q ss_pred HHHHhh
Q 008065 547 QEAAAG 552 (579)
Q Consensus 547 lEveAG 552 (579)
.|..+=
T Consensus 535 eer~ki 540 (581)
T KOG0995|consen 535 EERQKI 540 (581)
T ss_pred HHHHHH
Confidence 887654
No 134
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.08 E-value=2e+02 Score=30.09 Aligned_cols=75 Identities=27% Similarity=0.457 Sum_probs=61.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHH
Q 008065 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVE-GLMLDIAAA 534 (579)
Q Consensus 456 Ev~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVE-eLm~dIkaA 534 (579)
|+.++=.+|...+++.+.+|.+++++++...+|..-|..-++.--.++..+.+|.+-|. +|= -+|-+-...
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq--------~vRPAfmdEyEkl 230 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ--------SVRPAFMDEYEKL 230 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcChHHHHHHHHH
Confidence 36666778889999999999999999999999999999999999999999999998886 332 345555555
Q ss_pred HHHH
Q 008065 535 EEEI 538 (579)
Q Consensus 535 EEEi 538 (579)
|+|+
T Consensus 231 E~EL 234 (267)
T PF10234_consen 231 EEEL 234 (267)
T ss_pred HHHH
Confidence 5554
No 135
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.02 E-value=5.5e+02 Score=27.14 Aligned_cols=132 Identities=18% Similarity=0.299 Sum_probs=74.5
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 008065 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (579)
Q Consensus 230 SqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L 309 (579)
+++.....++-.+|.+--.-++.+.....+.+++|.++..++..|+..|..++.-| ..+..+|-+++-.+ +
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raRAm---q--- 111 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKRARAM---Q--- 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---H---
Confidence 44555555555555555566666666666677777766666666666666666655 35555555554221 1
Q ss_pred HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHH------HHHHhHHHHHhhHHHHhhHHHHHHH
Q 008065 310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRI------VVEKTRDLVQKKSREVKSLNEAVGQ 383 (579)
Q Consensus 310 ~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~e------V~~K~~~~~E~k~kE~k~Le~sV~~ 383 (579)
++++.. + ..-.+-+.+|+.|+..- |..==.+.++-.+..++.|+.+=..
T Consensus 112 ------~nG~~t--~-----------------Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~ 166 (265)
T COG3883 112 ------VNGTAT--S-----------------YIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAA 166 (265)
T ss_pred ------HcCChh--H-----------------HHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 122211 0 11123344555554332 2222345677777788888888777
Q ss_pred HHHhhhhHHHHH
Q 008065 384 LVKEKEHIVSLL 395 (579)
Q Consensus 384 L~kEnedI~sLL 395 (579)
|.+.++.+..++
T Consensus 167 l~~~~e~l~al~ 178 (265)
T COG3883 167 LEDKLETLVALQ 178 (265)
T ss_pred HHHHHHHHHHHH
Confidence 777777665544
No 136
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.44 E-value=4.5e+02 Score=26.00 Aligned_cols=107 Identities=23% Similarity=0.352 Sum_probs=67.9
Q ss_pred CCCCCccccCch--------hHHHHhhhchhHHHHHHHH-hhhhhh---hhhhHHHHHhhhhchheeeehhhhHHHhhhc
Q 008065 172 GLPRSQKYTGLP--------AVVYGVIKRTNEIVEELVG-QIDATA---KSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (579)
Q Consensus 172 ~lP~SqKYtGl~--------avaygv~KR~neiveel~~-Q~da~~---ksrn~aReqmeqrny~iAIEVSqLEasis~l 239 (579)
.+|-+.-|.+|. .+|.|..-=.-.+|+.+-+ ++|... -+-...=..+|..+|.+.-=-|.|.- +-.+
T Consensus 23 ~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k-LL~l 101 (190)
T PF05266_consen 23 KVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNK-LLSL 101 (190)
T ss_pred cCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHH-HHHH
Confidence 367777777776 5677777777777777765 444321 12233455678999998877777776 4467
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 008065 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVN 279 (579)
Q Consensus 240 r~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~ 279 (579)
+++-.+.......+++.+.+++.....++.++.+|..+|.
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~ 141 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKIL 141 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7877888888888888888873333333333333333333
No 137
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.30 E-value=4.8e+02 Score=29.98 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 261 DEKVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
..++..|+++...|+..+..|+.+|..
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448888888999999999999988865
No 138
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.99 E-value=4.1e+02 Score=25.43 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008065 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGR 553 (579)
Q Consensus 474 EI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAGk 553 (579)
+|..+...+..++.|...|+.--+.=.|.+.+...+|.+||-. +..+..-|..+|.|-. +-.+.-+
T Consensus 60 el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~-------~~~~~~~l~~~E~ek~-------q~~e~~~ 125 (140)
T PF10473_consen 60 ELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL-------NSSLENLLQEKEQEKV-------QLKEESK 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 3333333333344444444444444467788888899999843 4556677777777722 2222334
Q ss_pred hHHHHHHHHHhhh
Q 008065 554 AVEQEFVAQVCFL 566 (579)
Q Consensus 554 aveqEf~~q~~~l 566 (579)
.....+++|+-.|
T Consensus 126 ~~ve~L~~ql~~L 138 (140)
T PF10473_consen 126 SAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHhhh
Confidence 4555566665554
No 139
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.89 E-value=1e+03 Score=29.95 Aligned_cols=75 Identities=29% Similarity=0.347 Sum_probs=68.7
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhH
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~v 302 (579)
|||+.+..|+||--.++......+++.+++...+.++.-++.++.+..-.+.++.-+|.+.+...+=|-++++-|
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~v 751 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKV 751 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888887777643
No 140
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.64 E-value=1.3e+02 Score=26.76 Aligned_cols=62 Identities=29% Similarity=0.309 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhHHHH--HHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 008065 248 SFIENLEKSLIEKDEKVAEIESQGLEL--RQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (579)
Q Consensus 248 s~~e~l~ks~~eke~ki~ele~E~~~L--k~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L 309 (579)
..++.|...+...+.++..+|.++..| ++-+..+...+.+++-.=.-|..+++.++.+-+.|
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666655555 55555555555444443344455555555554444
No 141
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.34 E-value=1.1e+03 Score=30.23 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhHHHHH
Q 008065 490 SLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW----------KAAAEQEAAAGRAVEQEF 559 (579)
Q Consensus 490 ~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RW----------KeAcElEveAGkaveqEf 559 (579)
+-|..+.+.|...+.....+..++=++-.-+-|--+.|...|...+.=..-| ++.|....+-+..+..-.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~m 633 (1486)
T PRK04863 554 DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYM 633 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHH
Confidence 3455555555555555555555555566666666667777776655444444 455666777777776666
Q ss_pred HHHHhhhhhhhhh
Q 008065 560 VAQVCFLSCLRRE 572 (579)
Q Consensus 560 ~~q~~~l~~~~~~ 572 (579)
+..+.....++.+
T Consensus 634 q~~~~~~~~~~~~ 646 (1486)
T PRK04863 634 QQLLERERELTVE 646 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555443
No 142
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.17 E-value=2e+02 Score=33.58 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=22.3
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhch
Q 008065 257 LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP 293 (579)
Q Consensus 257 ~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~ 293 (579)
+..++.+|..|+++..+-+..++.|+.+|..++.-+.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666666666666655554444
No 143
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.11 E-value=73 Score=28.05 Aligned_cols=53 Identities=13% Similarity=0.357 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhchhhhchhh--HHhhhhHHHHH---HHHHHHHhhh
Q 008065 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLL--VDQLNYVSKIH---DQVDDIIKIV 316 (579)
Q Consensus 264 i~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL--~dql~~vs~ih---d~L~~vi~~v 316 (579)
|.-+..+..-.|.+|.++..+|+.|+.+..-+ .++++.|+.++ +.|..+++..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34445566677888888888888888666555 34777777776 5566666555
No 144
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.08 E-value=7.3e+02 Score=29.37 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=50.2
Q ss_pred hhhhhHHHHHhhhhchheeeeh----hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 008065 208 AKSRNDVREQMEQRNFEIAIEV----SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (579)
Q Consensus 208 ~ksrn~aReqmeqrny~iAIEV----SqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~ 283 (579)
..+|.--|.++|.|-..|-+|+ +++--.+-++-++|-+-+.-++++...++-.-..-..+=.+-..|+..-+.+|.
T Consensus 48 ~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 48 LRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4458888999999877777764 455555666667777777778877666655544433333344445555555554
Q ss_pred Hhhch
Q 008065 284 KLKNL 288 (579)
Q Consensus 284 klk~~ 288 (579)
+.+.+
T Consensus 128 r~kii 132 (655)
T KOG3758|consen 128 RKKII 132 (655)
T ss_pred HHHHH
Confidence 44433
No 145
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=33.00 E-value=14 Score=41.72 Aligned_cols=52 Identities=29% Similarity=0.407 Sum_probs=0.0
Q ss_pred eehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 227 IEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
.+...|-+.+..||+|+-++....+++ ..++..+++++..|++.+.++-...
T Consensus 239 ~~~~~l~~ql~~L~~el~~~e~~~~d~-------~~~~e~le~ei~~L~q~~~eL~~~A 290 (713)
T PF05622_consen 239 VELADLRAQLRRLREELERLEEQRDDL-------KIELEELEKEIDELRQENEELQAEA 290 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666665544333333 3344444455555666665554443
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.75 E-value=4.7e+02 Score=25.43 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=30.7
Q ss_pred hhHHhhhhhhhhhhhhhhhhcc--------cCC--CCCCCC--CCCCCCccccCch----hHHHHhhhchhHHHH
Q 008065 140 LRSEIENSAHMLVTGIEKISGK--------VSN--FKNFSA--GGLPRSQKYTGLP----AVVYGVIKRTNEIVE 198 (579)
Q Consensus 140 l~~ei~~s~~mL~sg~ekis~k--------~s~--~k~f~~--~~lP~SqKYtGl~----avaygv~KR~neive 198 (579)
+...+......++.-+-.|-.- -++ ...|+- .+||.+..+++.| +.|+|.+-..=-++-
T Consensus 138 l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~~~~~~~~~I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls 212 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEIFPIEQVSSPRRPSDSSSSEYTICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLS 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecccccCCCCCCCCeeecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 5555665665555543333222 111 344433 4577887777764 466776554443333
No 147
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.62 E-value=7.6e+02 Score=27.74 Aligned_cols=203 Identities=15% Similarity=0.266 Sum_probs=110.5
Q ss_pred HHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhh-------hhhcccCCCCCCCCCCCC
Q 008065 102 IAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE-------KISGKVSNFKNFSAGGLP 174 (579)
Q Consensus 102 l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~e-------kis~k~s~~k~f~~~~lP 174 (579)
|..+-.+-+.+...|+++..+=...|...+..-.--..++..+-+-+|.+-.+++ .|...++.|...
T Consensus 114 l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l------ 187 (569)
T PRK04778 114 LDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVEL------ 187 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH------
Confidence 3334444444444455544444444444444444444455555544444444443 444555555554
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHHhhhhh----hhhh----------hHHHHHhhhhchheeeehhhhHHHhhhch
Q 008065 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDAT----AKSR----------NDVREQMEQRNFEIAIEVSELEATISGLR 240 (579)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~----~ksr----------n~aReqmeqrny~iAIEVSqLEasis~lr 240 (579)
..+|=+.=|..++..+++=+..|=..|+.- ..-. ...=.+|...||-+. --.++..|..++
T Consensus 188 ---~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~--~~~i~~~i~~l~ 262 (569)
T PRK04778 188 ---TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLD--HLDIEKEIQDLK 262 (569)
T ss_pred ---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC--CCChHHHHHHHH
Confidence 445777788999888776554433322221 1111 233457888899653 335677787777
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 008065 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (579)
Q Consensus 241 ~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vd 317 (579)
+.+..--..+.+| .+..-..++..++..+..|-+.+..-..--+..+...+.+-+.+.-+..--..|..=++.|+
T Consensus 263 ~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 263 EQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666 34445566666666555555555444333344445566666666655555555555555554
No 148
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.56 E-value=3.3e+02 Score=27.92 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=24.9
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhh--hhhhhhHHHHHhhh
Q 008065 181 GLPAVVYGVIKRTNEIVEELVGQIDA--TAKSRNDVREQMEQ 220 (579)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da--~~ksrn~aReqmeq 220 (579)
|..-.-+=||-|+--++.+++.-.+. +-+....++.+.+-
T Consensus 104 Gf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 104 GFVLFLSLVIRRLHTLLRELATLRANEKAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhc
Confidence 44444445789999999999877763 33444444444443
No 149
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.17 E-value=2.3e+02 Score=23.59 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 475 IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (579)
Q Consensus 475 I~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEEr 516 (579)
|.+|.-.+.-.---++.|-..+..|.++|.....+++.|.+|
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555566666666666666666666554
No 150
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=32.16 E-value=1.9e+02 Score=25.43 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 262 ~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
.+|..++..+..|-+.+..+|.+.+.||
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544444
No 151
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.11 E-value=2.4e+02 Score=23.97 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
-.++.+++..+..|+.+++.++.++.+++
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666677777777776665444
No 152
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.91 E-value=2.2e+02 Score=30.01 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh
Q 008065 270 QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (579)
Q Consensus 270 E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~v 316 (579)
|++++++++.+++....-|+..++.| .|-|.++++++.++...|
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l---~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKL---PGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHhcccc
Confidence 66678888888877776666554444 356777777776665443
No 153
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.66 E-value=1.8e+02 Score=31.55 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=38.9
Q ss_pred hhhHHHHHhhhhchheee-ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHH--hHH-HHHHHHHhHHHHHHHHHHHHHHh
Q 008065 210 SRNDVREQMEQRNFEIAI-EVSELEATISGLREEVAKKSSFIENLEKSLIE--KDE-KVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 210 srn~aReqmeqrny~iAI-EVSqLEasis~lr~eva~k~s~~e~l~ks~~e--ke~-ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
..+..++.+..|||..-| +|.+|......+..++..--+..-.++|++.. +.. ...++-.++..|++.+..++.++
T Consensus 10 n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 10 NPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777778764211 12233333222222222222222333333332 111 23345556677777777777777
Q ss_pred hchhhh
Q 008065 286 KNLESH 291 (579)
Q Consensus 286 k~~e~~ 291 (579)
+.++++
T Consensus 90 ~~~~~~ 95 (425)
T PRK05431 90 DELEAE 95 (425)
T ss_pred HHHHHH
Confidence 666543
No 154
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.27 E-value=2.1e+02 Score=25.19 Aligned_cols=44 Identities=30% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEL 513 (579)
Q Consensus 470 ~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkEL 513 (579)
.+..+|..||++|..+-..++-.+..-++=..+=.-+..||..|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888887777766666655555555666666666
No 155
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.19 E-value=1.9e+02 Score=30.46 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=33.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhH-HHHHH
Q 008065 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV-SKIHD 307 (579)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~v-s~ihd 307 (579)
..++.+.++++.+++++|.++-++|.+++..+--|.+.++++ +|||.
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666888888888888888888888888877765 34444
No 156
>PRK02119 hypothetical protein; Provisional
Probab=31.01 E-value=2.2e+02 Score=24.26 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008065 273 ELRQLV 278 (579)
Q Consensus 273 ~Lk~~v 278 (579)
+.-+.|
T Consensus 20 ~QE~ti 25 (73)
T PRK02119 20 FQENLL 25 (73)
T ss_pred HHHHHH
Confidence 333333
No 157
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.92 E-value=2e+02 Score=24.36 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHH
Q 008065 251 ENLEKSLIEKDEKVAEIESQGLEL 274 (579)
Q Consensus 251 e~l~ks~~eke~ki~ele~E~~~L 274 (579)
+.|.+-++.-...|..+.+++..|
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 158
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=30.71 E-value=3e+02 Score=25.79 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=54.6
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCC
Q 008065 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRS 176 (579)
Q Consensus 97 ~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~S 176 (579)
++|.+|.-+--+-=.|-++|-.+......+.+. .+.+.-+..++.+...--.|- -..||+ .+-.+|..|
T Consensus 4 ~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~-~~~~~el~~lq~qL~eIe~~R-----~~DGKF---~~~~~g~~~-- 72 (134)
T PF10303_consen 4 PISPELQPIYEKLISIRRSLLSLNTRSKFSDSS-EESSSELKPLQEQLKEIESMR-----DVDGKF---VSPDTGEVP-- 72 (134)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhccCCCccc-cccHHHHHHHHHHHHHHHHhc-----cCCCCe---eCCCCCCCC--
Confidence 455666655555556667776665553333111 233344455666554443333 123433 332122222
Q ss_pred ccccCchhHHHHhhhchhHHHHHHHHhhhh
Q 008065 177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206 (579)
Q Consensus 177 qKYtGl~avaygv~KR~neiveel~~Q~da 206 (579)
-|-++++-|.+-+.+++++++..+-++
T Consensus 73 ---~~gQ~~l~~LLd~C~~li~dl~~~~~~ 99 (134)
T PF10303_consen 73 ---PGGQAVLNGLLDDCFDLIEDLLERKGE 99 (134)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345799999999999999999887764
No 159
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.66 E-value=1.2e+03 Score=29.42 Aligned_cols=208 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHH
Q 008065 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVD 310 (579)
Q Consensus 231 qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~ 310 (579)
+|=+-|-.|..-+-.+.-+...|.-...+-...+.........+.++|.+++..+.+++.-+..|.+++-.+.....--.
T Consensus 485 el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~ 564 (1195)
T KOG4643|consen 485 ELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGA 564 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHh-HHHHHhhH----HHHhhHHHHHHHHH
Q 008065 311 DIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKT-RDLVQKKS----REVKSLNEAVGQLV 385 (579)
Q Consensus 311 ~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~eV~~K~-~~~~E~k~----kE~k~Le~sV~~L~ 385 (579)
.+=+..++..+ ....++-++-.+.+.-.=-.-++.+. +.|+-... +.+.-|-..+.-|.
T Consensus 565 ~LEq~~n~lE~----------------~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kll 628 (1195)
T KOG4643|consen 565 LLEQNNNDLEL----------------IHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKLL 628 (1195)
T ss_pred HHHHhhhHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhhc
Q ss_pred HhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcccccccccccCCCCCCCccccCCCcchhhHHhhHHHHHH
Q 008065 386 KEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALE 465 (579)
Q Consensus 386 kEnedI~sLLRsALsEKea~d~~qk~seLLQiAE~GLq~vGfgF~~~~~~geg~~~~S~d~~~~~~~eedEv~SLAsalE 465 (579)
+++.|++.+..--|. .-.-.+++.+| ||..---.|+ ..+.+....++.+.+|=.+++|.+.
T Consensus 629 ~~Kkdr~ree~kel~--------~ekl~ve~l~e-~l~~lp~~fk----------t~n~e~l~V~sn~lEe~qr~~~~~s 689 (1195)
T KOG4643|consen 629 KEKKDRNREETKELM--------DEKLQVEDLQE-KLRELPLEFK----------TKNDEILMVGSNILEERQRLGGCKS 689 (1195)
T ss_pred chhHHHHHHHHhhcc--------ccchhHHHHHH-HHHhCchhhc----------cccchhhhhhhhhhhhhhhhccccc
Q ss_pred HHHHHHHH
Q 008065 466 NIVKASQL 473 (579)
Q Consensus 466 niMK~sql 473 (579)
|.+..++.
T Consensus 690 n~~~~l~q 697 (1195)
T KOG4643|consen 690 NAEIDLLQ 697 (1195)
T ss_pred cchHHHHH
No 160
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.07 E-value=4.8e+02 Score=26.97 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchH---------HHhhhhhhHHHH
Q 008065 183 PAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLRE---------EVAKKSSFIENL 253 (579)
Q Consensus 183 ~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~---------eva~k~s~~e~l 253 (579)
|..|.-+....=+-++..+.++ ..+.+.+++.-++++==+.--++.+.|..+...|. ....-...+..|
T Consensus 142 P~~A~~ian~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L 219 (362)
T TIGR01010 142 AEEAQKINQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL 219 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHhhchhhh
Q 008065 254 EKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKLKNLESH 291 (579)
Q Consensus 254 ~ks~~eke~ki~ele~-------E~~~Lk~~v~e~e~klk~~e~~ 291 (579)
+..+.+.+.+++++.. .+-.++..++.++..|.....+
T Consensus 220 ~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~ 264 (362)
T TIGR01010 220 EGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQ 264 (362)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHH
No 161
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.06 E-value=3e+02 Score=23.14 Aligned_cols=52 Identities=31% Similarity=0.371 Sum_probs=32.7
Q ss_pred hhhHHHh---hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065 230 SELEATI---SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (579)
Q Consensus 230 SqLEasi---s~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~ 281 (579)
|.|+|-| -.+.+|+-+=-+-.-++++.|.+-+.+..+|+.++..|+..++++
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455544 134455544444455666677777888888888888887777665
No 162
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.89 E-value=3.6e+02 Score=23.12 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 008065 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (579)
Q Consensus 251 e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vd 317 (579)
+.|+..+..-=..|..|..|+.+|+.....+......|.....-|... -....++|..++..++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e---~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE---RNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence 334444444445566666677777777666665555555444444432 2345556666665554
No 163
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=29.44 E-value=95 Score=36.05 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=42.9
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~ 276 (579)
|++|+-+|++...|+..+-++++.|.++++..+..|+.|..|+..++-
T Consensus 26 v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 26 VPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 789999999999999999999999999999999999988886665554
No 164
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=29.21 E-value=4.7e+02 Score=28.25 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=59.8
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH-------HHHHHhhchhhhchhhHHhhh
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVN-------EYEDKLKNLESHRPLLVDQLN 300 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~-------e~e~klk~~e~~r~lL~dql~ 300 (579)
-+.-|+--+-..|+-+..|+-..|.+.+.++.....+.+++.-...-++++. +++..|-.+.+.+-+|-.||+
T Consensus 159 K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd 238 (305)
T PF14915_consen 159 KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD 238 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888999999999999999999999999999984444444444 455556666677888888887
Q ss_pred hHHHHHH
Q 008065 301 YVSKIHD 307 (579)
Q Consensus 301 ~vs~ihd 307 (579)
-+-+--+
T Consensus 239 dA~~K~~ 245 (305)
T PF14915_consen 239 DAHNKAD 245 (305)
T ss_pred HHHHHHH
Confidence 6554433
No 165
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=29.15 E-value=1.2e+03 Score=28.98 Aligned_cols=233 Identities=19% Similarity=0.259 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHh----HHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc-c---hhhHHH
Q 008065 31 RFREVLAELNRERQAREAAENSAT----ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN-D---KLSTEI 102 (579)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~----e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~-~---~~s~~l 102 (579)
++..+.-|+..=..++.+++.-+- |++..-.||--+.++.--||||.-+-=+ +|+.|-+.|-.. . .+..+.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~-~L~nk~~~lt~~~~q~~tkl~e~ 192 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE-DLHDKNEELNEFNMEFQTKLAEA 192 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH-HHhhhhhHHhHHHHHHHHHHHHH
Confidence 344444444444445566665444 4455555666666666667777665544 477766655432 1 233455
Q ss_pred HHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCc
Q 008065 103 AEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGL 182 (579)
Q Consensus 103 ~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl 182 (579)
...|++-.+..+||++.+.+-|. ++++ .++ .+-+..+|-.--.-|.+-.+-++
T Consensus 193 ~~en~~le~k~~k~~e~~~~nD~-~sle--~~~-~q~~tq~vl~ev~QLss~~q~lt----------------------- 245 (1265)
T KOG0976|consen 193 NREKKALEEKLEKFKEDLIEKDQ-KSLE--LHK-DQENTQKVLKEVMQLSSQKQTLT----------------------- 245 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchH-HHHH--HHH-HHHHHHHHHHHHHHHHHhHhhhh-----------------------
Confidence 67788889999999998887443 2221 111 12222333222222222222111
Q ss_pred hhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHh--
Q 008065 183 PAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK-- 260 (579)
Q Consensus 183 ~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~ek-- 260 (579)
+ ++-|--.++|..--..+.+|-=-+--.|.+-.|--..=|.||-|--+--+.+++. .|.++.+.-
T Consensus 246 -p-----~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd-------~lkqt~t~a~g 312 (1265)
T KOG0976|consen 246 -P-----LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELD-------TLKQTRTRADG 312 (1265)
T ss_pred -h-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHhhc
Confidence 1 1222223344444444444444444444444555555566666666654444432 222222211
Q ss_pred ----------------HHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHH
Q 008065 261 ----------------DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (579)
Q Consensus 261 ----------------e~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ 304 (579)
-..++.+.-...+.|-++..+++|+.+||.+|.++....-.+..
T Consensus 313 dseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e 372 (1265)
T KOG0976|consen 313 DSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE 372 (1265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 33445555577777888888888888888888776655433333
No 166
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.00 E-value=5.5e+02 Score=25.01 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=31.5
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~ 269 (579)
|+..|..-+..++.+|+.-...++.|++.-..--.++.++++
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~ 69 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677778888888888888888888766655666666666
No 167
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.81 E-value=2.6e+02 Score=33.93 Aligned_cols=118 Identities=18% Similarity=0.197 Sum_probs=76.4
Q ss_pred HHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 008065 199 ELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (579)
Q Consensus 199 el~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v 278 (579)
.|.+++--...---.+++|-|---|+.-+|++.|+.-.++||.|+..-.+..-.| -.++..|+..+|++...|+.+.
T Consensus 488 ~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl---~eer~qklk~le~q~s~lkk~l 564 (913)
T KOG0244|consen 488 PLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL---GEERVQKLKSLETQISLLKKKL 564 (913)
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHhh
Confidence 3444443322233467888888889999999999999999999999888733222 4566788888888887777766
Q ss_pred HHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCC
Q 008065 279 NEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDG 319 (579)
Q Consensus 279 ~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~ 319 (579)
.+--.-++....-......-.+++-.++..=..++.....+
T Consensus 565 ~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d 605 (913)
T KOG0244|consen 565 SSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKED 605 (913)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 65544443333333333344555556666666666555444
No 168
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.36 E-value=3.3e+02 Score=31.54 Aligned_cols=63 Identities=32% Similarity=0.414 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008065 473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (579)
Q Consensus 473 lEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWK 542 (579)
.+|.++++-+-..|.+-+.|..|+-.=-+-=-+.+...+|||+|+. ++|....+||+|+.--|
T Consensus 240 sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA-------E~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA-------ECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Confidence 4566666666666666666666654433333456677789999875 66777888998886543
No 169
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=28.26 E-value=4.1e+02 Score=23.29 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008065 472 QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAA 551 (579)
Q Consensus 472 qlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveA 551 (579)
+.|+..+.+..++.+.....+..-+....+++.....-|..=..++--+-.+.+.|..|++..--=+.+=.+..+.=..
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~- 80 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE- 80 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH-
Confidence 4566666666666666666666666666666666666655554455445556677777776666555555444333222
Q ss_pred hhhHHHHHHHHHhhhh
Q 008065 552 GRAVEQEFVAQVCFLS 567 (579)
Q Consensus 552 GkaveqEf~~q~~~l~ 567 (579)
.+.+|+.+|..+.
T Consensus 81 ---~E~~~~~~l~~~E 93 (96)
T PF08647_consen 81 ---TEKEFVRKLKNLE 93 (96)
T ss_pred ---HHHHHHHHHHHhh
Confidence 7888888877664
No 170
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=27.76 E-value=6.9e+02 Score=25.75 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=60.5
Q ss_pred hchhHHHHHHHHhhhhhhhhhh---HHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 008065 191 KRTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (579)
Q Consensus 191 KR~neiveel~~Q~da~~ksrn---~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~el 267 (579)
-|+.+=...+..+..-+.++-+ +++--|+.|+.+--=.+..+|+.++--+-=...--.-.+..-+.|+.+++.+-..
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ 100 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERA 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566666677778888888887 4555568898877666677777765443222222224566667777777777666
Q ss_pred HHhHHHHHHHHHHHHHHhhch
Q 008065 268 ESQGLELRQLVNEYEDKLKNL 288 (579)
Q Consensus 268 e~E~~~Lk~~v~e~e~klk~~ 288 (579)
++-+.---..|.+++..++.+
T Consensus 101 eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 101 EERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 654444444555555555443
No 171
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=27.57 E-value=4.1e+02 Score=29.09 Aligned_cols=76 Identities=28% Similarity=0.299 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIAN------------ESVEGLMLDIAAAE 535 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~------------enVEeLm~dIkaAE 535 (579)
+..+|+...+|..+++=--.|--.|-+.---..-++.+++.-|.|||| .||+ .-|-+|.-+-+-.|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE--aiLagGaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE--AILAGGAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888898888877777666666555556667777777777774 3332 22566667777777
Q ss_pred HHHHHHHHHH
Q 008065 536 EEISRWKAAA 545 (579)
Q Consensus 536 EEi~RWKeAc 545 (579)
.|++|-|+-+
T Consensus 80 RELARaKV~a 89 (351)
T PF07058_consen 80 RELARAKVSA 89 (351)
T ss_pred HHHHHhhhhh
Confidence 7777765543
No 172
>PRK14141 heat shock protein GrpE; Provisional
Probab=27.56 E-value=3.9e+02 Score=27.05 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhHHHHH
Q 008065 341 NIRASLAGMESIYQLT 356 (579)
Q Consensus 341 ~lrasl~~~ksI~eLa 356 (579)
.+.....|+++|+..-
T Consensus 112 ~~~~l~eGv~mi~k~l 127 (209)
T PRK14141 112 GLKALIEGVEMTERAM 127 (209)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4666778888888733
No 173
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.41 E-value=8.2e+02 Score=26.52 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=61.7
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 008065 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSL-------LKEHLEAQAKELSHRMKRIEELEEKERIANESVE 525 (579)
Q Consensus 453 eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~-------Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVE 525 (579)
..||+-.|+.++.+.+++++.-|.+++++......-+.. +-.-++.|+..+.+-...++++- +++.
T Consensus 243 ~~DEig~l~~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis-------~~~~ 315 (553)
T PRK15048 243 GRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLT-------ATVK 315 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 358899999999999998888888888776666554444 44445555555555555555443 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 008065 526 GLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLS 567 (579)
Q Consensus 526 eLm~dIkaAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~ 567 (579)
+....+..+.+.+. -+-..+..|....++...++..|.
T Consensus 316 e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~ 353 (553)
T PRK15048 316 QNADNARQASQLAQ----SASDTAQHGGKVVDGVVKTMHEIA 353 (553)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322222 233455667777777766666554
No 174
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.38 E-value=6.4e+02 Score=25.27 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHH-HHHHHhhh
Q 008065 257 LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQ-VDDIIKIV 316 (579)
Q Consensus 257 ~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~-L~~vi~~v 316 (579)
+...-.....++.++..||.-++..-...-.|+.+-.-|-+.|.+...+|+. +..+-..+
T Consensus 91 ~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 91 YEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 3333455566666677777777766666666667777778888888888886 44443333
No 175
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=27.23 E-value=7.5e+02 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.472 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhhhhhhHHHHHhhhhchhe
Q 008065 197 VEELVGQIDATAKSRNDVREQMEQRNFEI 225 (579)
Q Consensus 197 veel~~Q~da~~ksrn~aReqmeqrny~i 225 (579)
+..++.+++.-.+.|...-+++..+++.|
T Consensus 193 Lr~~l~~l~~lk~eR~~~~~~Lk~~~dDI 221 (339)
T cd09235 193 LRQLMEQVETIKAEREVIESELKSATFDM 221 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 56667777777777877777777776654
No 176
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.16 E-value=8.2e+02 Score=28.02 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008065 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524 (579)
Q Consensus 469 K~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enV 524 (579)
.|+|-.+-+|.....++|+.+-+|+.++++|+-+.....-+|+.|=+|....-++-
T Consensus 300 Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~ 355 (502)
T KOG0982|consen 300 ENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLR 355 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999988777777777777666655543
No 177
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.14 E-value=1.9e+02 Score=32.64 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (579)
Q Consensus 468 MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEEr 516 (579)
+...|....+|+..|+..|.|...|.........+|.++...|+.|+.+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888887777766666666666666666666544
No 178
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.52 E-value=2.7e+02 Score=27.25 Aligned_cols=59 Identities=24% Similarity=0.230 Sum_probs=43.3
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHh-HHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEK-DEKVAEIESQGLELRQLVNEYEDKLK 286 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~ek-e~ki~ele~E~~~Lk~~v~e~e~klk 286 (579)
++++|+..+..|...++.=...++.+++...+. .........|+.+||..+..+...|+
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346688888888888888888888888777653 33334445588889988888877774
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.29 E-value=3.5e+02 Score=30.80 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=46.1
Q ss_pred HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhh
Q 008065 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (579)
Q Consensus 234 asis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql 299 (579)
+-+.+.|.....+..++.+|+-..+.-++..--+|+-+..+..++..+...++....-++.|.+..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467788888888888888877666665555555666666777777777777766666666666643
No 180
>PRK10869 recombination and repair protein; Provisional
Probab=26.26 E-value=9.8e+02 Score=26.99 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=47.9
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH-hhchh-hhchhhHHhhhhHHHHHHHHHHHHh
Q 008065 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK-LKNLE-SHRPLLVDQLNYVSKIHDQVDDIIK 314 (579)
Q Consensus 237 s~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~k-lk~~e-~~r~lL~dql~~vs~ihd~L~~vi~ 314 (579)
..++.++...-..|.++.+.+.+....-.+..++..+|+-.+++++.- ++.-| ..=.--.+.|.-..+|.+.+..+..
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~ 232 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQ 232 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777787777788877777776666665666666666666555421 11111 0001112345556677777777777
Q ss_pred hhcC
Q 008065 315 IVDD 318 (579)
Q Consensus 315 ~vdd 318 (579)
.+++
T Consensus 233 ~L~~ 236 (553)
T PRK10869 233 LLAD 236 (553)
T ss_pred HhcC
Confidence 7754
No 181
>PRK14161 heat shock protein GrpE; Provisional
Probab=26.14 E-value=6.4e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 251 e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
.-+++.+.--.++|.+++.++.+++++.--+-+.+.|+.
T Consensus 15 ~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 15 DIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666666666655555555554
No 182
>PRK04325 hypothetical protein; Provisional
Probab=25.87 E-value=3e+02 Score=23.45 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 008065 250 IENLEKSLIEKDEKVAEIESQGLELRQLV 278 (579)
Q Consensus 250 ~e~l~ks~~eke~ki~ele~E~~~Lk~~v 278 (579)
++.|.+-++.-...|..|.+.+..|.+++
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333333
No 183
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.71 E-value=2e+02 Score=24.70 Aligned_cols=56 Identities=20% Similarity=0.461 Sum_probs=42.5
Q ss_pred eeehhhhHHHhhhchHHHhhhhhhHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065 226 AIEVSELEATISGLREEVAKKSSFIEN---LEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (579)
Q Consensus 226 AIEVSqLEasis~lr~eva~k~s~~e~---l~ks~~eke~ki~ele~E~~~Lk~~v~e~ 281 (579)
.++.-.++.+++.||--+.+--+.+.+ +.+++.+.+.+|..++.++...++.+..|
T Consensus 20 ~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 20 PLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888887776666666 78888888888988877777766666665
No 184
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.69 E-value=4.5e+02 Score=24.49 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=9.4
Q ss_pred hhhHHHhhhchHHHhhhhhhHHH
Q 008065 230 SELEATISGLREEVAKKSSFIEN 252 (579)
Q Consensus 230 SqLEasis~lr~eva~k~s~~e~ 252 (579)
+.|+++=..+++|+.+-+...+.
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333
No 185
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.66 E-value=3.2e+02 Score=25.51 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhc
Q 008065 45 AREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124 (579)
Q Consensus 45 ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~d~~~~~r~ 124 (579)
.|.+++.|.++++..+.=|-.-....=--++++..+||+ |.+-+..+..+++...+.+.++-..=+
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~--------------L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQ--------------LRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCccchhhhhhhhhhhhHHhhhh
Q 008065 125 GSRSQLDEVTKAKDGLRSEIENS 147 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~ei~~s 147 (579)
+-+.+++.---|+..|++.....
T Consensus 69 ea~~~le~eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 69 EARRNLEDEKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 186
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.43 E-value=3.3e+02 Score=22.60 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (579)
Q Consensus 470 ~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEE 515 (579)
..+.++......++...-+...|....+.+.++|..+..+|+++++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666654
No 187
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=25.28 E-value=8e+02 Score=25.66 Aligned_cols=145 Identities=19% Similarity=0.272 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHh
Q 008065 27 FSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVN 106 (579)
Q Consensus 27 ~s~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~ 106 (579)
..+.+++.++.+|+.=+..|..-+..+-+.-...+=...|.-.. ++ . -+.+=++ -|+.-+++.+.|.+-.
T Consensus 188 ~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~--~~-~-----~e~lf~~--eL~k~~~~~~~l~~~~ 257 (337)
T cd09234 188 AIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTT--GG-D-----MEDLFKE--ELKKHDQLVNLIEQNL 257 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhc--ch-h-----HHHHHHH--HHHHhhhHHHHHHHHH
Confidence 45889999999999999998887766633222211111111100 00 0 0111111 2333555666666555
Q ss_pred hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhh---hhcccCCCCCCCCCCCCCCccccCch
Q 008065 107 IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK---ISGKVSNFKNFSAGGLPRSQKYTGLP 183 (579)
Q Consensus 107 ~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ek---is~k~s~~k~f~~~~lP~SqKYtGl~ 183 (579)
..-+.+-++|.++-..=-+.|...+. ...+-+..-+.|..+..+ |.+++.--..| |++|.
T Consensus 258 ~~Q~~ll~~i~~an~~f~~~r~~~~~-------~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~F----------Y~dL~ 320 (337)
T cd09234 258 AAQENILKALTEANAKYAPVRKALSE-------TKQKRESTISSLIASYEAYEDLLKKSQKGIDF----------YKKLE 320 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------HHHHH
Confidence 55555555554433221000111122 223333334444444433 33333333344 88999
Q ss_pred hHHHHhhhchhHHHH
Q 008065 184 AVVYGVIKRTNEIVE 198 (579)
Q Consensus 184 avaygv~KR~neive 198 (579)
.++-+|.+++.+.|.
T Consensus 321 ~~v~~~~~~~~~f~~ 335 (337)
T cd09234 321 GNVSKLLQRIKSVCK 335 (337)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888777664
No 188
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=24.90 E-value=2.7e+02 Score=30.13 Aligned_cols=136 Identities=26% Similarity=0.250 Sum_probs=82.0
Q ss_pred CCCCCCCccccCch-----------hHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHH-hh
Q 008065 170 AGGLPRSQKYTGLP-----------AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEAT-IS 237 (579)
Q Consensus 170 ~~~lP~SqKYtGl~-----------avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEas-is 237 (579)
+-++|++.+|.-++ ....+-|.++-+.|..+=.+-++..|...-+++ +-.++|+--+||+-++-. +-
T Consensus 140 ~~~~~~~~~~~k~~~~~~~~~~~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~-~i~~~~~e~~e~~~~~k~~~~ 218 (325)
T KOG2669|consen 140 AKKLPRGSKQIKLDEKGSKPGLSSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEE-RIARLPQEVEEVSSLEKITLN 218 (325)
T ss_pred hhccccchHhhhhhhhccCCCCCCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhhhH
Confidence 45566665555333 344566778889999988888988888887765 556889999999998864 66
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----hHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 008065 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIES----QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (579)
Q Consensus 238 ~lr~eva~k~s~~e~l~ks~~eke~ki~ele~----E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L 309 (579)
-+.+++++...+.+.+ +.+-..+++.... =+..|++...+-...+.+.+.+-+...++++-+.-+.+.+
T Consensus 219 ~~~e~~~k~lee~~~l---L~e~~~~L~s~~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~n~~~~~ 291 (325)
T KOG2669|consen 219 SLIESLAKHLEEEEML---LREVNPRLAAEEESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQNVQKEL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcccchhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHhhhhhhh
Confidence 6667777777776666 4444444443322 2233444433333334344444444455554333333333
No 189
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.84 E-value=1.2e+03 Score=27.55 Aligned_cols=105 Identities=21% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 008065 463 ALENIVKASQLE-IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW 541 (579)
Q Consensus 463 alEniMK~sqlE-I~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RW 541 (579)
.+-...+.+|-+ |..+...-++.-.-...|+...+.|-++|.+.+..++.|.++---+++..|....--+....=+.+=
T Consensus 540 lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 540 LLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhh
Q 008065 542 KAAAEQEAAAGRAVEQEFVAQVCFLS 567 (579)
Q Consensus 542 KeAcElEveAGkaveqEf~~q~~~l~ 567 (579)
......=.----.++++|...|-.++
T Consensus 620 l~~l~~~~P~LS~AEr~~~~EL~~~~ 645 (717)
T PF10168_consen 620 LQLLNSQLPVLSEAEREFKKELERMK 645 (717)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHH
No 190
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.65 E-value=3.4e+02 Score=23.40 Aligned_cols=69 Identities=32% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKE---HLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDI 531 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~---l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dI 531 (579)
.+..-.+.++.++.+||+.--....+...++. -.+.--.+.......|++||....-+.+.+..++..|
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 191
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.64 E-value=3.9e+02 Score=28.23 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhh
Q 008065 527 LMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRR 571 (579)
Q Consensus 527 Lm~dIkaAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~~~~~ 571 (579)
++-..+.=+..+.--+.+.+.+-+-=.+...||.+++-.|+.=--
T Consensus 149 ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~ 193 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKA 193 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666777777777777777888887777765433
No 192
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.55 E-value=1.1e+03 Score=26.94 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=25.6
Q ss_pred HhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 008065 50 ENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE 87 (579)
Q Consensus 50 e~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ 87 (579)
+..+.+++..=.++...-+++-++.++...+|+.+-..
T Consensus 216 q~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~k 253 (489)
T PF05262_consen 216 QEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQK 253 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44456666666666666677777778888887776433
No 193
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.43 E-value=3.1e+02 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=13.6
Q ss_pred hhHHHHHHHHhhhhhhhhhhHHHHH
Q 008065 193 TNEIVEELVGQIDATAKSRNDVREQ 217 (579)
Q Consensus 193 ~neiveel~~Q~da~~ksrn~aReq 217 (579)
+.+-+..|=+|+......-++++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566666666655555555444
No 194
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.30 E-value=6.3e+02 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=26.8
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheee
Q 008065 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAI 227 (579)
Q Consensus 188 gv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAI 227 (579)
.||.|+.++..+.=.+++.....=++-|.++++..-++.-
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888777666766666666666666665544433
No 195
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.12 E-value=5.6e+02 Score=23.49 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 474 EI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
+...++..+...++...+|+.--.....+|......|.++|....-+...++.+...+ ..|+.||...
T Consensus 118 ~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~---~~El~~f~~~ 185 (218)
T cd07596 118 TLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERL---KEELKRFHEE 185 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3344445555556666666543333446777777788888777777777676665544 4788888643
No 196
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.03 E-value=1.5e+02 Score=26.39 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008065 467 IVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (579)
Q Consensus 467 iMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E 497 (579)
.++.++.+|.+|+..+..++.|.+-|++.+.
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999999999998764
No 197
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.97 E-value=2.9e+02 Score=26.33 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhH
Q 008065 171 GGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI 250 (579)
Q Consensus 171 ~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~ 250 (579)
+|||..|-=+=+.++..-+-...+-+-..++..-|-.. ...++.+.++.||-|+.
T Consensus 14 ~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~-------------------~~~~~~a~~~eLr~el~------ 68 (177)
T PF07798_consen 14 AGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLEN-------------------QEYLFKAAIAELRSELQ------ 68 (177)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 251 e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
.-....++.+..+...|+..++.+...|+.
T Consensus 69 -------~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 69 -------NSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 198
>PLN02320 seryl-tRNA synthetase
Probab=23.90 E-value=3.5e+02 Score=30.73 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=42.9
Q ss_pred hhhhHHHHHhhhhchheeeehhhh---HHHhhhchHHHhhhhhhHHHHHHHHHHh--HHHHHHHHHhHHHHHHHHHHHHH
Q 008065 209 KSRNDVREQMEQRNFEIAIEVSEL---EATISGLREEVAKKSSFIENLEKSLIEK--DEKVAEIESQGLELRQLVNEYED 283 (579)
Q Consensus 209 ksrn~aReqmeqrny~iAIEVSqL---Easis~lr~eva~k~s~~e~l~ks~~ek--e~ki~ele~E~~~Lk~~v~e~e~ 283 (579)
...+..++.+..|||.+. |.++ ....-.+..++..--+.-..+.|++..+ .....++-.++..|++.+..+|.
T Consensus 74 ~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 74 DNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred hCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888987643 3332 2222222222332233333334444332 12344555677788888888887
Q ss_pred Hhhchhh
Q 008065 284 KLKNLES 290 (579)
Q Consensus 284 klk~~e~ 290 (579)
.++.+++
T Consensus 152 ~~~~~~~ 158 (502)
T PLN02320 152 DLVKLTD 158 (502)
T ss_pred HHHHHHH
Confidence 7766654
No 199
>PRK00106 hypothetical protein; Provisional
Probab=23.71 E-value=6.2e+02 Score=28.95 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=19.2
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~ 272 (579)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...+.++.
T Consensus 99 L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLe 142 (535)
T PRK00106 99 LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHID 142 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333334444444444444444444444444444333
No 200
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.52 E-value=6.9e+02 Score=25.66 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=57.0
Q ss_pred hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHH
Q 008065 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKI 305 (579)
Q Consensus 231 qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~i 305 (579)
.|++.+++.+...+..---+|+...+.-+.+..-.++..+.+-|++.+..+-..+.++..-.|-.++-+.-..+.
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 577777777777777767777877777777777778889999999988888888888887777776665555555
No 201
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.45 E-value=6.2e+02 Score=23.71 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065 469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE 546 (579)
Q Consensus 469 K~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE 546 (579)
..++.++.++++.+..+..+.+.++........++.........+.+--+-..+++..+-..++...+|+..-...|.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~ 154 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQ 154 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888888888888888888777777777777777777888888888888888877773333
No 202
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.23 E-value=3e+02 Score=22.85 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (579)
Q Consensus 249 ~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~ 281 (579)
.++.|..-+..-...|..|++.+..|.+++.++
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444433
No 203
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.09 E-value=8.4e+02 Score=25.10 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=68.2
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHH
Q 008065 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANES----VEGLMLD 530 (579)
Q Consensus 455 dEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~en----VEeLm~d 530 (579)
...-|.-..|+..+-.+.+.+-.|+.+.+.+-+.-+.=...+++=++++...+..++.|-..=.=.+++ ++.+...
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~ 156 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHL 156 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345556677788888889999999999998877777777777777888888888777776554444444 6777778
Q ss_pred HHHHHHHHHHHHH
Q 008065 531 IAAAEEEISRWKA 543 (579)
Q Consensus 531 IkaAEEEi~RWKe 543 (579)
-+.+=++..||--
T Consensus 157 ~K~~~eaanrwtD 169 (203)
T KOG3433|consen 157 EKTMAEAANRWTD 169 (203)
T ss_pred HHHHHHHHhhhhh
Confidence 8888888999964
No 204
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.03 E-value=6.6e+02 Score=27.92 Aligned_cols=84 Identities=23% Similarity=0.287 Sum_probs=60.8
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh-chhhhchhhHHhh----hhHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK-NLESHRPLLVDQL----NYVS 303 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk-~~e~~r~lL~dql----~~vs 303 (579)
..+||..|..+++|-..----.+++.....||+.+-..|.+|..+..-....|-++-. .+-.|+.+|-.-= ++=+
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEs 208 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLES 208 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Confidence 4579999999999988888889999999999999999999988887776666644332 2235666665522 3355
Q ss_pred HHHHHHHHH
Q 008065 304 KIHDQVDDI 312 (579)
Q Consensus 304 ~ihd~L~~v 312 (579)
||.|-+++|
T Consensus 209 KVqDLm~Ei 217 (401)
T PF06785_consen 209 KVQDLMYEI 217 (401)
T ss_pred HHHHHHHHH
Confidence 666654444
No 205
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.85 E-value=1e+03 Score=25.90 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=62.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008065 457 IYNLAGALENIVKASQLEIVELRH----SVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA 532 (579)
Q Consensus 457 v~SLAsalEniMK~sqlEI~eLrh----sLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIk 532 (579)
+-.+.+.+..++...+..+.-|.. .|+.-.+-.-.|-..++..-++.........+..++++-++++|.+++.+++
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555666666555555544443 4444455555666666677777788888888899999999999999999888
Q ss_pred HHHHHHHHHHHHHH
Q 008065 533 AAEEEISRWKAAAE 546 (579)
Q Consensus 533 aAEEEi~RWKeAcE 546 (579)
..=+|+-.=|.-.+
T Consensus 305 ~IseeLe~vK~eme 318 (359)
T PF10498_consen 305 EISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777766665544
No 206
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=22.54 E-value=2.2e+02 Score=29.17 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHh-hhhcCCccchhhhhhhhh
Q 008065 60 FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVT-KARDGSRSQLDEVTKAKD 138 (579)
Q Consensus 60 f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~d~~~-~~r~~~~~~~~~~~~~~~ 138 (579)
+.-+|+-|+|-||||++ .-..|-+=|..+-+-|||+..|+.... ..---...+.++...
T Consensus 17 LE~~k~~A~EElRk~ee-----------------qi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~~~~~~~--- 76 (214)
T PF07795_consen 17 LEATKMEANEELRKREE-----------------QIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQSDEQQQ--- 76 (214)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccccC---
Q ss_pred hhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHHHHhhhch
Q 008065 139 GLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRT 193 (579)
Q Consensus 139 ~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~ 193 (579)
-.+.|.++.+.=.|..+ -+.--|+|.+|.+.+-|.-++-.|..+|.+=+.+|.
T Consensus 77 -~~~s~~~~~s~ssS~~~-~s~~Ss~~~~~~~~~~~~~~~~~~~~~v~~la~~K~ 129 (214)
T PF07795_consen 77 -PNSSLTSSNSHSSSPVE-ESISSSPFSNFNPLPQQQQQQVDPADAVLELAKGKP 129 (214)
T ss_pred -ccccccCCCCcCCCCCC-CCccCCcccccCccccccccccChHHHHHHHHhCCC
No 207
>PRK00295 hypothetical protein; Provisional
Probab=22.50 E-value=4.1e+02 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 008065 250 IENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (579)
Q Consensus 250 ~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e 280 (579)
++.|.+-++.-...|..+.+++..|.+++.+
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333
No 208
>smart00338 BRLZ basic region leucin zipper.
Probab=22.45 E-value=3.1e+02 Score=21.93 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 504 SHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 504 a~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
.....||.+||.+-..+-.-.++|...+...+.|+..++.-
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888888888888888888888888877754
No 209
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=22.31 E-value=7.4e+02 Score=24.18 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=27.0
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhc
Q 008065 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISG 160 (579)
Q Consensus 97 ~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~ 160 (579)
.|..+...+++....+.++-.++... .+..+....++.....=...-+++|+|
T Consensus 93 ~L~~~~~~L~~~e~~l~~~~~~l~~~-----------~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 93 QLDRRLEQLEKREEELEKKEEELEQR-----------KEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555444443222 233445566666555555556666665
No 210
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=21.78 E-value=9e+02 Score=25.00 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008065 27 FSVERFREVLAELNRERQAREAAENSA 53 (579)
Q Consensus 27 ~s~~~~~~l~ael~~er~ar~aae~s~ 53 (579)
..+..++.++.+|+.-++.|..-+..+
T Consensus 190 ~~v~~Lr~~l~~l~~lk~eR~~~~~~l 216 (342)
T cd08915 190 EVVSSLRPLLNEVSELEKERERFISEL 216 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999888888776655
No 211
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.69 E-value=1.5e+03 Score=27.61 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=48.2
Q ss_pred HHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 008065 198 EELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQL 277 (579)
Q Consensus 198 eel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~ 277 (579)
-.|=+-.-+.+|-|+-+|-+|. .||+++|.+--- + -|++|+.-|+.|-.|++.|-+.
T Consensus 412 a~lEkKvqa~~kERDalr~e~k------------------slk~ela~~l~~--D---eLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQK------------------SLKKELAAALLK--D---ELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHhhhh--H---HHHHHHHHHHHHHHHHHHhHHH
Confidence 4566777889999999998874 467777765322 3 3788899999888888888766
Q ss_pred HHHHHHHhhchh
Q 008065 278 VNEYEDKLKNLE 289 (579)
Q Consensus 278 v~e~e~klk~~e 289 (579)
+---..-||.|.
T Consensus 469 ql~qs~iIkKLR 480 (961)
T KOG4673|consen 469 QLAQSAIIKKLR 480 (961)
T ss_pred HHHHHHHHHHHH
Confidence 554444444443
No 212
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.54 E-value=7.8e+02 Score=24.20 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~e 522 (579)
|+..+..++..|.+.+++|...-+.--.+. +++.++...|.+++.|=..+.+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e-------~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELE-------RRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444443333 4455555555666655555443
No 213
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.50 E-value=7.6e+02 Score=24.06 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhc
Q 008065 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (579)
Q Consensus 241 ~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vd 317 (579)
.|+..+-..+..+++.+..++..+. +....|.++-..++.+-+.+..+...|-+.-.-+..++.....-+..+.
T Consensus 71 ~E~~~~~~el~~~E~rl~~rE~~L~---~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iA 144 (201)
T PF12072_consen 71 RELKERRKELQRLEKRLQQREEQLD---RRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666666665554443 2233444444444444444444444444444444454444444444444
No 214
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.04 E-value=8.3e+02 Score=24.32 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=54.9
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHH--HHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEK--VAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIH 306 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~k--i~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ih 306 (579)
+..|++-+..+++...+-.+.++|.-|-+..--.. --.+++ ++++.+.-+|.--+-+....+-+-..+.++.-|+
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~---~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~ 117 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIES---FAESLLPVKDSLEAALADESGDLEKLREGVELTL 117 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHH
Confidence 45677888888888888899999997765433222 222333 5555555554333222333334455677888888
Q ss_pred HHHHHHHhhhcCCC
Q 008065 307 DQVDDIIKIVDDGN 320 (579)
Q Consensus 307 d~L~~vi~~vdd~k 320 (579)
..|.+++....=..
T Consensus 118 k~l~~vL~k~Gv~~ 131 (185)
T PRK14139 118 KQLTSAFEKGRVVE 131 (185)
T ss_pred HHHHHHHHHCCCce
Confidence 88888887654333
No 215
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=20.91 E-value=8.9e+02 Score=24.60 Aligned_cols=79 Identities=27% Similarity=0.284 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 008065 461 AGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540 (579)
Q Consensus 461 AsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~R 540 (579)
|--|+--.+-.+.+--.|.+...++..+..+|+.-...+.++=..+...|.+++. -|.-|..+...-+.|+.+
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~-------~i~~l~ee~~~ke~Ea~~ 107 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA-------EIARLEEESERKEEEAEE 107 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777777777777777777777776655555555555543 366777888899999999
Q ss_pred HHHHHH
Q 008065 541 WKAAAE 546 (579)
Q Consensus 541 WKeAcE 546 (579)
|+.-+.
T Consensus 108 lq~el~ 113 (246)
T PF00769_consen 108 LQEELE 113 (246)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 996443
No 216
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.90 E-value=6.8e+02 Score=23.27 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=30.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHH
Q 008065 22 SSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHE 69 (579)
Q Consensus 22 ~~~~~~s~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~e 69 (579)
||--.+=.+|=..+...++.=.+++..|+.-+.+.+....-.+.=|.+
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ 92 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQL 92 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666677777777777777777777777665555444433
No 217
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=20.86 E-value=3.1e+02 Score=24.85 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=43.0
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHH
Q 008065 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIV 392 (579)
Q Consensus 345 sl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEnedI~ 392 (579)
|..+|..++++=..+...+..|.+....++..+..-+..+..+.....
T Consensus 2 S~~~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~ 49 (134)
T PF08336_consen 2 SVADMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAK 49 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999999999999999999999998888877544
No 218
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=20.81 E-value=6.7e+02 Score=26.61 Aligned_cols=64 Identities=27% Similarity=0.286 Sum_probs=39.5
Q ss_pred hHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 212 n~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
|+-|.||-++ |.|+|+-.++.+|.+ +.+-..-+++..-..+.++.++ .||....-+..+++.+.
T Consensus 166 ~d~rnq~l~~------~i~~l~~~l~~~~~~-~~~~~~~~~~~~~~~e~~~r~~-------~lr~~~~~l~~el~~aK 229 (264)
T PF07246_consen 166 NDRRNQILSH------EISNLTNELSNLRND-IDKFQEREDEKILHEELEARES-------GLRNESKWLEHELSDAK 229 (264)
T ss_pred hhhHHHHHHH------HHHHhhhhHHHhhch-hhhhhhhhhHHHHHHHHHHhHh-------hhHHHHHHHHHHHHHHH
Confidence 4778888875 478889999999888 3333333444444444444444 55555666666665554
No 219
>PRK02119 hypothetical protein; Provisional
Probab=20.53 E-value=4.1e+02 Score=22.63 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008065 502 ELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (579)
Q Consensus 502 eIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWK 542 (579)
++.....||.+||.|=.|.-..|++|=.-|.+--.+|.+-+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888888888777777666665544
No 220
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.45 E-value=8.4e+02 Score=24.67 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHhhhhhHHH
Q 008065 342 IRASLAGMESIYQ 354 (579)
Q Consensus 342 lrasl~~~ksI~e 354 (579)
+.....|+++|+.
T Consensus 92 ~~~i~~Gvemi~k 104 (208)
T PRK14155 92 VKNFIIGVEMTEK 104 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 4556788888876
No 221
>PRK04406 hypothetical protein; Provisional
Probab=20.44 E-value=5e+02 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008065 502 ELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (579)
Q Consensus 502 eIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAc 545 (579)
-+.....||.+||.|=.|.-..|++|=..|.+--.+|.+-+..|
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999988888777776655443
No 222
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.40 E-value=4.2e+02 Score=24.19 Aligned_cols=47 Identities=30% Similarity=0.464 Sum_probs=36.1
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHH
Q 008065 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEEL-------RAESSLLKEHLEAQ 499 (579)
Q Consensus 453 eedEv~SLAsalEniMK~sqlEI~eLrhsLEEs-------RsEs~~Lq~l~E~Q 499 (579)
.+.++|..-..|+.-+..+..+|.+|+..+.++ |.|-.+|+.++..-
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999999888765 55666666665543
No 223
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.37 E-value=4.4e+02 Score=30.00 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCc
Q 008065 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (579)
Q Consensus 247 ~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~ 321 (579)
+-.+|+++--+-.-+....++-..+--||-.++.++....-+.++=..|.+|++|--+.|..+-.+++.+-.++-
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE 370 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345566654444445555555555666666777777766666677778899999999999999999998766654
No 224
>PRK12705 hypothetical protein; Provisional
Probab=20.30 E-value=6.9e+02 Score=28.43 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=58.3
Q ss_pred eehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch-----hhhchhhHHhhh-
Q 008065 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL-----ESHRPLLVDQLN- 300 (579)
Q Consensus 227 IEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~-----e~~r~lL~dql~- 300 (579)
-|+.+.|..+..-.+.+.+|...+++.++.+..++.++...+.++..+ +.+...+|.+. +.-+..|++++.
T Consensus 77 ~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~~ 153 (508)
T PRK12705 77 EELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLDA 153 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345555666666666667777777777777777777777666644443 33333333222 133444444332
Q ss_pred --------------------hHHHHHHHHHHHHhhhcCCCccccccccccCCCccch
Q 008065 301 --------------------YVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETD 337 (579)
Q Consensus 301 --------------------~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~~etd 337 (579)
.=.+-.++|...|.+...+.+. ..+=|+...|.++
T Consensus 154 ~~~~e~~~~i~~~e~~~~~~a~~~A~~ii~~aiqr~a~~~~~--e~tvs~v~lp~de 208 (508)
T PRK12705 154 ELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETAS--DLSVSVVPIPSDA 208 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh--hheeeeeecCChH
Confidence 1223345677777777777653 2233344444444
No 225
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.22 E-value=5.9e+02 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=14.0
Q ss_pred hhchhhHHhhhhHHHHHHHHHHHHh
Q 008065 290 SHRPLLVDQLNYVSKIHDQVDDIIK 314 (579)
Q Consensus 290 ~~r~lL~dql~~vs~ihd~L~~vi~ 314 (579)
+....|-+.+.-+.+-.+.|..|+.
T Consensus 95 ~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 95 SEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444445555566666666666654
No 226
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.10 E-value=1.5e+02 Score=24.80 Aligned_cols=25 Identities=48% Similarity=0.401 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065 522 ESVEGLMLDIAAAEEEISRWKAAAE 546 (579)
Q Consensus 522 enVEeLm~dIkaAEEEi~RWKeAcE 546 (579)
-||++|-.-|+..+.||.|-+.+..
T Consensus 21 lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 21 LSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999876654
No 227
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.05 E-value=4.7e+02 Score=22.20 Aligned_cols=46 Identities=26% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM 507 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~ 507 (579)
++.+..+|.++.|-.-.-++|.....++..|+.-.+.-.|++.+..
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778888888888888888888888888888888877765543
No 228
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=20.02 E-value=6.4e+02 Score=22.56 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008065 467 IVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKA 543 (579)
Q Consensus 467 iMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKe 543 (579)
...+++.++..+++.|...+.+.-.++....+.++++-..+...+.-.+ --.+...|-.--+....+..||+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v 76 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999998888888888888777777776666554443 112233333344555667778875
Done!