Query 008065
Match_columns 579
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 17:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 94.8 0.078 2.7E-06 60.4 9.4 33 31-63 858-890 (1184)
2 1i84_S Smooth muscle myosin he 94.6 0.035 1.2E-06 63.2 6.0 36 29-64 863-898 (1184)
3 1c1g_A Tropomyosin; contractIl 91.4 6.8 0.00023 34.1 32.9 36 503-538 225-260 (284)
4 3oja_B Anopheles plasmodium-re 89.7 8.6 0.00029 39.3 15.6 106 464-569 461-577 (597)
5 3na7_A HP0958; flagellar bioge 88.8 5.2 0.00018 38.2 12.5 56 227-289 32-87 (256)
6 1c1g_A Tropomyosin; contractIl 86.5 16 0.00053 31.8 34.5 72 471-542 179-250 (284)
7 3na7_A HP0958; flagellar bioge 82.4 35 0.0012 32.5 15.4 78 462-539 49-128 (256)
8 3oja_B Anopheles plasmodium-re 78.5 22 0.00075 36.4 12.5 108 204-321 472-586 (597)
9 3tnu_B Keratin, type II cytosk 74.7 26 0.00089 30.5 10.3 58 456-520 19-76 (129)
10 3vkg_A Dynein heavy chain, cyt 73.9 1.7E+02 0.0057 38.1 20.6 24 230-253 2038-2061(3245)
11 2dfs_A Myosin-5A; myosin-V, in 72.0 43 0.0015 38.6 13.9 68 500-567 976-1043(1080)
12 3nmd_A CGMP dependent protein 69.5 8.2 0.00028 32.2 5.5 41 229-269 21-61 (72)
13 3tnu_A Keratin, type I cytoske 69.5 26 0.00089 30.7 9.1 58 456-520 21-78 (131)
14 2xdj_A Uncharacterized protein 66.9 28 0.00096 29.2 8.4 50 463-512 10-59 (83)
15 3mq7_A Bone marrow stromal ant 66.7 53 0.0018 29.8 10.5 54 452-505 50-110 (121)
16 3mq9_A Bone marrow stromal ant 65.9 31 0.0011 34.5 10.1 103 181-287 360-468 (471)
17 3hnw_A Uncharacterized protein 64.2 82 0.0028 28.3 12.2 90 452-541 25-129 (138)
18 2fxo_A Myosin heavy chain, car 62.5 79 0.0027 27.6 13.5 86 463-548 38-123 (129)
19 3hnw_A Uncharacterized protein 62.5 17 0.00059 32.7 6.7 65 225-289 66-130 (138)
20 3oja_A Leucine-rich immune mol 62.4 56 0.0019 32.9 11.2 102 199-300 375-487 (487)
21 2wq1_A General control protein 60.9 11 0.00038 27.6 4.1 27 511-544 3-29 (33)
22 2b5u_A Colicin E3; high resolu 58.3 21 0.00071 38.9 7.5 100 95-215 323-422 (551)
23 2fxo_A Myosin heavy chain, car 58.1 90 0.0031 27.2 10.4 91 202-296 27-117 (129)
24 3trt_A Vimentin; cytoskeleton, 57.3 23 0.0008 28.0 6.0 39 455-493 38-76 (77)
25 3u1c_A Tropomyosin alpha-1 cha 56.2 93 0.0032 26.4 12.7 56 467-522 10-65 (101)
26 1lwu_C Fibrinogen gamma chain; 55.0 27 0.00093 35.5 7.4 53 464-516 3-55 (323)
27 3he5_A Synzip1; heterodimeric 54.7 25 0.00086 27.1 5.4 41 240-280 9-49 (49)
28 1uo4_A General control protein 54.4 16 0.00055 26.9 4.1 28 510-544 3-30 (34)
29 3a7p_A Autophagy protein 16; c 52.8 52 0.0018 30.7 8.3 65 233-297 67-131 (152)
30 3c3g_A Alpha/beta peptide with 47.2 25 0.00086 25.7 4.1 21 524-544 9-29 (33)
31 3mq9_A Bone marrow stromal ant 46.5 1.3E+02 0.0045 30.1 10.8 60 471-530 402-465 (471)
32 3c3f_A Alpha/beta peptide with 46.4 26 0.00089 25.8 4.1 21 524-544 10-30 (34)
33 3m48_A General control protein 46.3 21 0.00071 26.2 3.6 22 523-544 8-29 (33)
34 2hy6_A General control protein 43.9 34 0.0012 25.2 4.4 29 510-545 3-31 (34)
35 2dfs_A Myosin-5A; myosin-V, in 43.3 1.4E+02 0.0049 34.4 11.7 71 466-539 984-1054(1080)
36 3vkg_A Dynein heavy chain, cyt 40.7 7.5E+02 0.026 32.4 20.7 29 246-274 1932-1960(3245)
37 2oxj_A Hybrid alpha/beta pepti 40.0 37 0.0013 25.0 4.1 22 523-544 9-30 (34)
38 2bni_A General control protein 39.8 37 0.0013 25.0 4.1 21 524-544 10-30 (34)
39 1kd8_B GABH BLL, GCN4 acid bas 39.7 37 0.0013 25.2 4.1 28 510-544 3-30 (36)
40 2v66_B Nuclear distribution pr 39.6 2E+02 0.0069 25.4 10.4 59 234-292 3-65 (111)
41 4e61_A Protein BIM1; EB1-like 38.7 2.1E+02 0.0071 25.3 9.5 15 298-312 85-99 (106)
42 3oja_A Leucine-rich immune mol 37.7 3.3E+02 0.011 27.3 16.5 103 371-514 366-469 (487)
43 2oqq_A Transcription factor HY 37.2 46 0.0016 25.4 4.4 33 265-297 6-38 (42)
44 1kd8_A GABH AIV, GCN4 acid bas 36.6 37 0.0013 25.2 3.7 21 524-544 10-30 (36)
45 3nmd_A CGMP dependent protein 35.9 85 0.0029 26.2 6.2 41 475-515 21-61 (72)
46 2b9c_A Striated-muscle alpha t 32.5 2.9E+02 0.0098 25.1 10.8 104 191-301 13-119 (147)
47 3mtu_A Tropomyosin alpha-1 cha 29.4 1.4E+02 0.0047 24.4 6.4 50 261-311 8-66 (75)
48 1t2k_D Cyclic-AMP-dependent tr 29.1 1.7E+02 0.0056 22.5 6.6 40 505-544 19-58 (61)
49 1deq_A Fibrinogen (alpha chain 29.1 3.5E+02 0.012 28.6 10.8 47 464-510 111-157 (390)
50 1zxa_A CGMP-dependent protein 29.0 70 0.0024 26.3 4.5 39 247-285 10-48 (67)
51 3onj_A T-snare VTI1; helix, HA 28.4 2.4E+02 0.0084 23.5 8.0 72 235-308 9-83 (97)
52 1cii_A Colicin IA; bacteriocin 27.9 4.5E+02 0.015 28.9 11.6 146 197-391 337-482 (602)
53 4emc_A Monopolin complex subun 27.6 1.6E+02 0.0055 28.4 7.5 46 204-253 1-46 (190)
54 2qyw_A Vesicle transport throu 27.4 2.3E+02 0.0079 23.9 7.7 73 232-305 20-93 (102)
55 1ci6_A Transcription factor AT 27.3 1.5E+02 0.0051 23.3 6.1 36 462-497 26-61 (63)
56 1vcs_A Vesicle transport throu 27.2 2E+02 0.0067 24.3 7.2 80 233-314 11-91 (102)
57 1ci6_A Transcription factor AT 27.0 95 0.0033 24.4 4.9 30 261-290 22-51 (63)
58 1fzc_C Fibrin; blood coagulati 26.3 48 0.0016 33.7 3.8 46 228-287 5-50 (319)
59 3iv1_A Tumor susceptibility ge 25.7 2.1E+02 0.0071 24.1 7.0 63 209-289 11-73 (78)
60 3iv1_A Tumor susceptibility ge 25.2 3.1E+02 0.01 23.1 7.9 31 184-214 7-37 (78)
61 1gk4_A Vimentin; intermediate 25.2 2.8E+02 0.0096 22.6 9.3 78 37-152 1-78 (84)
62 2wt7_A Proto-oncogene protein 25.1 2.1E+02 0.0072 22.2 6.6 40 506-545 21-60 (63)
63 2r2v_A GCN4 leucine zipper; co 25.0 94 0.0032 22.9 4.1 21 524-544 10-30 (34)
64 1gk4_A Vimentin; intermediate 24.7 1.5E+02 0.0051 24.3 5.9 25 229-253 35-59 (84)
65 3ghg_A Fibrinogen alpha chain; 24.4 3.2E+02 0.011 30.1 9.8 43 227-269 109-152 (562)
66 3ghg_A Fibrinogen alpha chain; 24.1 3.7E+02 0.013 29.6 10.3 86 460-545 51-161 (562)
67 3ni0_A Bone marrow stromal ant 24.0 3.1E+02 0.011 24.2 7.9 35 452-486 43-87 (99)
68 4etp_A Kinesin-like protein KA 24.0 1.1E+02 0.0039 31.3 6.2 8 329-336 114-121 (403)
69 2oqq_A Transcription factor HY 24.0 1.5E+02 0.0051 22.7 5.2 27 252-278 14-40 (42)
70 4etp_A Kinesin-like protein KA 23.9 97 0.0033 31.8 5.6 6 290-295 66-71 (403)
71 2w83_C C-JUN-amino-terminal ki 23.3 1.9E+02 0.0064 24.6 6.2 59 86-158 9-67 (77)
72 3tnu_B Keratin, type II cytosk 22.9 3.7E+02 0.013 23.2 10.1 59 228-289 37-95 (129)
73 3zbh_A ESXA; unknown function, 22.3 2.7E+02 0.0093 21.5 12.0 38 453-490 10-47 (99)
74 1gd2_E Transcription factor PA 22.0 1.4E+02 0.0048 24.4 5.1 44 244-287 25-68 (70)
75 1ic2_A Tropomyosin alpha chain 22.0 3.1E+02 0.011 22.1 8.2 69 236-304 8-76 (81)
76 1ses_A Seryl-tRNA synthetase; 21.7 1.6E+02 0.0054 30.3 6.7 78 210-289 10-91 (421)
77 3trt_A Vimentin; cytoskeleton, 21.7 2.9E+02 0.01 21.6 7.8 37 252-288 39-75 (77)
78 2dgc_A Protein (GCN4); basic d 21.1 1.7E+02 0.006 23.0 5.4 34 505-545 27-60 (63)
79 3tnu_A Keratin, type I cytoske 20.8 4.1E+02 0.014 23.0 10.2 59 228-289 39-97 (131)
80 2yy0_A C-MYC-binding protein; 20.3 73 0.0025 24.7 3.0 28 247-274 18-45 (53)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.75 E-value=0.078 Score=60.41 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhh
Q 008065 31 RFREVLAELNRERQAREAAENSATELSEKFNRL 63 (579)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rl 63 (579)
.+.++-.+|..-+..-...+....+++.....|
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444433333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.57 E-value=0.035 Score=63.19 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhH
Q 008065 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK 64 (579)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlk 64 (579)
.+++.++-+.|.+....+..++.....++...+.++
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444444443
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.37 E-value=6.8 Score=34.10 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 008065 503 LSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI 538 (579)
Q Consensus 503 Ia~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi 538 (579)
+......+..++..-.-+...+..+-..+..+..++
T Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (284)
T 1c1g_A 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444443333334444444444444333
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.74 E-value=8.6 Score=39.33 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL-----------EAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA 532 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~-----------E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIk 532 (579)
++..|..+..++.+.+..+...+.+.+..+... +...+++.+...+++.++..-..+-+.++..+....
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 456777777777777778877777776655443 455666677777888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhh
Q 008065 533 AAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCL 569 (579)
Q Consensus 533 aAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~~~ 569 (579)
..+.|+.+|+..++..-+.-....+|....-..++.|
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888877665555544
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.84 E-value=5.2 Score=38.19 Aligned_cols=56 Identities=4% Similarity=0.098 Sum_probs=40.9
Q ss_pred eehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 227 IEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
-||..|++.+.+++..+......++++.+.....+..|. .++.++..+..++.+..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v~ 87 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEIK 87 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHccC
Confidence 567788888888888888777777777666666666665 77777888877775443
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.51 E-value=16 Score=31.82 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008065 471 SQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (579)
Q Consensus 471 sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWK 542 (579)
++..+..+...+.........+......-...+......+..++..-.-+...+.++-..+..++..+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (284)
T 1c1g_A 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 250 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333333233333444444444444444444444444444444444444433
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.42 E-value=35 Score=32.51 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEA--QAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEIS 539 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~--QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~ 539 (579)
..+...++.+..+|..+...++..+.-..+.+..+.. =.+++..+++.|.-++.+-..+...+-++|..|.+.+.++.
T Consensus 49 ~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555444321 01333444444444444444444444444444444443333
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.48 E-value=22 Score=36.36 Aligned_cols=108 Identities=10% Similarity=0.087 Sum_probs=44.5
Q ss_pred hhhhhhhhhHHHHHhhhhchheeeehh-------hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 008065 204 IDATAKSRNDVREQMEQRNFEIAIEVS-------ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (579)
Q Consensus 204 ~da~~ksrn~aReqmeqrny~iAIEVS-------qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~ 276 (579)
++...+.-+..++.++.+--...+.+. +|+..+..+++..+........++++..++.+....+++|...++.
T Consensus 472 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 472 QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 333334444444555544433333333 3333444444444444444444444444444444333333333333
Q ss_pred HHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCc
Q 008065 277 LVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (579)
Q Consensus 277 ~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~ 321 (579)
.+++-..++ .+.-.-...+...+..+.+.++++-.
T Consensus 552 ~~~~~~~~~----------~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 552 QLDNKRAKQ----------AELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHhhhhhHH----------HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333332222 22222334455566667777776654
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.68 E-value=26 Score=30.53 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=30.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008065 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA 520 (579)
Q Consensus 456 Ev~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl 520 (579)
++.+.|+.-...+...+.||++|++.+..++.+.+.|+.. .+.+...|.++|.+....
T Consensus 19 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~-------~~~LE~~l~e~e~~~~~~ 76 (129)
T 3tnu_B 19 ELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ-------CANLQNAIADAEQRGELA 76 (129)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHH
Confidence 3455555566677888899999999999999988877654 234455555555555443
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.94 E-value=1.7e+02 Score=38.10 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=10.1
Q ss_pred hhhHHHhhhchHHHhhhhhhHHHH
Q 008065 230 SELEATISGLREEVAKKSSFIENL 253 (579)
Q Consensus 230 SqLEasis~lr~eva~k~s~~e~l 253 (579)
.+|++.|..|+++.+...++.+.|
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L 2061 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQI 2061 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.97 E-value=43 Score=38.65 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 008065 500 AKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLS 567 (579)
Q Consensus 500 aKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~ 567 (579)
.+++.+....|+.|++.-.-+.+.++.+..+-++.|+.+..=++-.+..+..=....+....|+..|.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666666666666666666666666665555555555555555555555555
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.50 E-value=8.2 Score=32.19 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=32.9
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~ 269 (579)
|-+|+..+..-.+|+..|-..++.|++.+.+||..|.+|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888888888888888884443
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.48 E-value=26 Score=30.67 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008065 456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIA 520 (579)
Q Consensus 456 Ev~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl 520 (579)
++.+.|+.-...++..+.||++|++.+..+.++.+.|+.. .+.+...|.++|.+....
T Consensus 21 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~-------~~sLE~~l~e~e~~~~~~ 78 (131)
T 3tnu_A 21 ELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSM-------KASLENSLEETKGRYCMQ 78 (131)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHH
Confidence 3445555566677888999999999999999988777653 234455555555554443
No 14
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=66.90 E-value=28 Score=29.22 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEE 512 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkE 512 (579)
.+|+++.+...-..+|+..++.++.|+..|+-.+|.+.-+|.....+-++
T Consensus 10 ~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 10 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46777777777889999999999999999999999999988887665554
No 15
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.71 E-value=53 Score=29.80 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=44.3
Q ss_pred chhhHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008065 452 TEEDEIYNLAGALENI-------VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505 (579)
Q Consensus 452 ~eedEv~SLAsalEni-------MK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~ 505 (579)
+|..-|.+|--.|+.. |+.++-||..|.|.|.++-++.++|+...+.+...|+.
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 5777788887777763 78899999999999999999999999988876655543
No 16
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.85 E-value=31 Score=34.52 Aligned_cols=103 Identities=17% Similarity=0.286 Sum_probs=63.7
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeee--hhhhHHHhhhchHHHhhh----hhhHHHHH
Q 008065 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIE--VSELEATISGLREEVAKK----SSFIENLE 254 (579)
Q Consensus 181 Gl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIE--VSqLEasis~lr~eva~k----~s~~e~l~ 254 (579)
.+..+.+|-. =..+.++++..+++... ++.+.+++-+||.-.|. ++++++....+|-..+.- -+.-++|+
T Consensus 360 ~~~~vl~G~~-t~eeal~~~~~~i~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 360 AVINAASGRQ-TVDEALKDAQTRITAAR---DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHSSS-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHH---HhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 3444555532 34556666666666554 33566667777765443 455555555555443321 13557888
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 255 ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
|.++.-.++|.|+|-|+-.|...+...++.++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888998888888777777777776643
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.20 E-value=82 Score=28.31 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=75.6
Q ss_pred chhhHHhhHHHHHHHHHHHHHHH--H-------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 452 TEEDEIYNLAGALENIVKASQLE--I-------------VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (579)
Q Consensus 452 ~eedEv~SLAsalEniMK~sqlE--I-------------~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEEr 516 (579)
.+++-+..+|.-|..-|+.++.. - .-+=|-+-.++.+...|...++.-.++|..+.+.+..+..+
T Consensus 25 e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999988832 1 12345566778888899999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH
Q 008065 517 ERIANESVEGLMLDIAAAEEEISRW 541 (579)
Q Consensus 517 Ervl~enVEeLm~dIkaAEEEi~RW 541 (579)
..-+...+++|-.++.+.+.++.+-
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.52 E-value=79 Score=27.59 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008065 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK 542 (579)
Q Consensus 463 alEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWK 542 (579)
-++..+..+..+.++|+.+|..-+.-+.-.....+.=.+.-.+....|++|++|=-=.-+....|+..-+-++.++.-++
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777778888888887765544332233222222333355566677766655566667888888889999998888
Q ss_pred HHHHHH
Q 008065 543 AAAEQE 548 (579)
Q Consensus 543 eAcElE 548 (579)
.-++.+
T Consensus 118 ~~led~ 123 (129)
T 2fxo_A 118 RDIDDL 123 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.47 E-value=17 Score=32.68 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=49.7
Q ss_pred eeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 225 IAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 225 iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
||=|.-++...+..|+.++..+..++.+|-..+.....++.++.++...|++.+.+|+.++..|+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666677778888888888888888888888888888888888888888887776
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.38 E-value=56 Score=32.86 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=47.6
Q ss_pred HHHHhhhhhhhhhhHHHHHhhhhchheee-ehhhhH---HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH-----
Q 008065 199 ELVGQIDATAKSRNDVREQMEQRNFEIAI-EVSELE---ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES----- 269 (579)
Q Consensus 199 el~~Q~da~~ksrn~aReqmeqrny~iAI-EVSqLE---asis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~----- 269 (579)
.+-.+..+-...+.+.++++.|..++.+- ++..++ ..+....+..++.-.+.+...+.....-.++..+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (487)
T 3oja_A 375 QVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARL 454 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhh
Confidence 33344444445556666666665543332 223322 223223333344444444444444444434444444
Q ss_pred --hHHHHHHHHHHHHHHhhchhhhchhhHHhhh
Q 008065 270 --QGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (579)
Q Consensus 270 --E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~ 300 (579)
++.++...+.+-.++++++-.+...|+.|+|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 455 KKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 4444444444444555555566777777765
No 21
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=60.85 E-value=11 Score=27.56 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 511 EELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 511 kELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
+.||+| ||+|+-.+...|.||.|-|.-
T Consensus 3 nQLEdK-------VEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDK-------IEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 456665 999999999999999998864
No 22
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.27 E-value=21 Score=38.93 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=55.7
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 008065 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (579)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP 174 (579)
.++.-.||.+++|.-...+..++-+++. .+++++++..+-..|-..+- -+++|-+|...|+-
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~~t~~~--------------~~~~~~~~~~~n~~~~~~~~----~~~~f~~~n~~p~~ 384 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQAKAVQV--------------YNSRKSELDAANKTLADAIA----EIKQFNRFAHDPMA 384 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHGGGTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHhhhhHHHHHHH----hhhhhhhhccChhh
Confidence 3444555667766666666655555555 34444444333333332222 23566666555544
Q ss_pred CCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHH
Q 008065 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVR 215 (579)
Q Consensus 175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aR 215 (579)
-- .++.+.-.. -++|+++=|.-+=.+.|++++.-.+|.
T Consensus 385 ~G--h~~w~~~~~-~~~~~~~dv~~~~a~~d~~~~~~s~~~ 422 (551)
T 2b5u_A 385 GG--HRMWQMAGL-KAQRAQTDVNNKQAAFDAAAKEKSDAD 422 (551)
T ss_dssp TH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--chhhhhccc-hhhhhhhhhhhHHHHHHHHhhcccchh
Confidence 33 222222111 688999999999899999877665554
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.08 E-value=90 Score=27.24 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=54.1
Q ss_pred HhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (579)
Q Consensus 202 ~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~ 281 (579)
..+....+.|.+ |+..+-..--|...|-..+..-++-++.....++.|.++-.+-+.+|.+++..+....+.+..+
T Consensus 27 e~l~k~e~~r~e----le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 27 EALEKSEARRKE----LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444 4444555555666666666666666677777777777766677777777766666666666666
Q ss_pred HHHhhchhhhchhhH
Q 008065 282 EDKLKNLESHRPLLV 296 (579)
Q Consensus 282 e~klk~~e~~r~lL~ 296 (579)
...-+.++..-.-|-
T Consensus 103 ~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 103 TAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544444333333
No 24
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=57.26 E-value=23 Score=28.05 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=32.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008065 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLK 493 (579)
Q Consensus 455 dEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq 493 (579)
+++.+.|+.=...++..+-||++|++.+.-+..|++.|+
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346666777777889999999999999999999888775
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=56.24 E-value=93 Score=26.38 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008065 467 IVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522 (579)
Q Consensus 467 iMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~e 522 (579)
-|..++++.-...--.+.+....-.+......-..+|..+.++|+-||+-=-.+.+
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666667777888888888877754333333
No 26
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.02 E-value=27 Score=35.47 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEK 516 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEEr 516 (579)
+...+++++-+|.+|...|-..-+.+..|+..+..+..+|.++...|.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999988888999999999999999999999999988865
No 27
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.68 E-value=25 Score=27.09 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=31.7
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 008065 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (579)
Q Consensus 240 r~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e 280 (579)
-.|||+--.+-|.|.|.---|..-|+-+++|+-+||.+|++
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 34557777777888777777788899999999999988753
No 28
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.38 E-value=16 Score=26.87 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 510 IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
...||+| ||+|+..-...|.||+|-|.-
T Consensus 3 M~QLEdK-------VEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDK-------GEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 3456655 999999999999999999864
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.80 E-value=52 Score=30.73 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHH
Q 008065 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (579)
Q Consensus 233 Easis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~d 297 (579)
-.+|..|+.+++.....+.+|...+.+|..-+..+.-|+..|+=....++.+++.++.-+.-|++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777888888888888888898888888889999999999999999999876666665
No 30
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=47.16 E-value=25 Score=25.72 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008065 524 VEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 524 VEeLm~dIkaAEEEi~RWKeA 544 (579)
||+|+..-.+.|.||.|-|.-
T Consensus 9 vEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999864
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.54 E-value=1.3e+02 Score=30.07 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 008065 471 SQLEIVELRHSVEELRAESSL----LKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD 530 (579)
Q Consensus 471 sqlEI~eLrhsLEEsRsEs~~----Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~d 530 (579)
+|.+|.++|..+-..|....- .-+|.+-=.|+.++-.++|+|||..=.-+||-++++-.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554332 122333345677777788888886655555544444333
No 32
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=46.36 E-value=26 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008065 524 VEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 524 VEeLm~dIkaAEEEi~RWKeA 544 (579)
||+|+..-.+.|.||.|-|.-
T Consensus 10 VEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999864
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=46.28 E-value=21 Score=26.16 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008065 523 SVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 523 nVEeLm~dIkaAEEEi~RWKeA 544 (579)
-||+|+..-...|.||.|-|.-
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4999999999999999998863
No 34
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=43.89 E-value=34 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008065 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (579)
Q Consensus 510 IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAc 545 (579)
.+.||+| ||+|+-.-...|.||.|.|.+.
T Consensus 3 MnQLEdk-------VEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADA-------VEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-------HHHHHHhhHHHHHHHHHHHHHh
Confidence 3456655 9999999999999999998764
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.25 E-value=1.4e+02 Score=34.42 Aligned_cols=71 Identities=25% Similarity=0.326 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 008065 466 NIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEIS 539 (579)
Q Consensus 466 niMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~ 539 (579)
+.|++++.+|.+|+..+.++..|...|+.... |.+ ......|..|+.--.+|-+.+++|.-.|..-+++++
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~-~~~--~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD-KYK--HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555433321 111 233455666666666666777777766666666554
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=40.67 E-value=7.5e+02 Score=32.40 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHhHHHH
Q 008065 246 KSSFIENLEKSLIEKDEKVAEIESQGLEL 274 (579)
Q Consensus 246 k~s~~e~l~ks~~eke~ki~ele~E~~~L 274 (579)
-+..|+.|.+.|.++..++.+-..|+..+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666766666666555554443
No 37
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.03 E-value=37 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 008065 523 SVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 523 nVEeLm~dIkaAEEEi~RWKeA 544 (579)
.||+||..-.+.|.||.|.|.-
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3999999999999999999864
No 38
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.82 E-value=37 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008065 524 VEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 524 VEeLm~dIkaAEEEi~RWKeA 544 (579)
||+|+..-.+.+.||.|-|.-
T Consensus 10 vEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 10 LEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHH
Confidence 999999999999999999864
No 39
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.67 E-value=37 Score=25.23 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 510 IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
.+.||+| ||+|+-.-...|.||.|-|.-
T Consensus 3 MnQLE~K-------VEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAK-------VEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-------HHHHHHHhHHHHHHHHHHHHH
Confidence 3456655 999999999999999999864
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.62 E-value=2e+02 Score=25.45 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHhhhchHHHhhhhhhHHHHHHH----HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc
Q 008065 234 ATISGLREEVAKKSSFIENLEKS----LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR 292 (579)
Q Consensus 234 asis~lr~eva~k~s~~e~l~ks----~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r 292 (579)
..++.|+..++.=..++|.|-.. -++--..++.|++|+..|++..+.|-.+|+.+|..+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666666443 344456799999999999999999999999998443
No 41
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.66 E-value=2.1e+02 Score=25.33 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHHH
Q 008065 298 QLNYVSKIHDQVDDI 312 (579)
Q Consensus 298 ql~~vs~ihd~L~~v 312 (579)
...++.+|..+||.-
T Consensus 85 ~~~~~~kIq~ILYaT 99 (106)
T 4e61_A 85 LLRFVKKVESILYAT 99 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 345566666666654
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.69 E-value=3.3e+02 Score=27.32 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=69.3
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcccccccccccCCCCCCCccccCCC
Q 008065 371 SREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAM 450 (579)
Q Consensus 371 ~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~d~~qk~seLLQiAE~GLq~vGfgF~~~~~~geg~~~~S~d~~~~~ 450 (579)
..++++++..|...-++...+..-++.+...-+- | ..+.
T Consensus 366 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~----~-------------------------------------~~~~ 404 (487)
T 3oja_A 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL----Q-------------------------------------HATE 404 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC----C-------------------------------------CCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhh----c-------------------------------------cccc
Confidence 3445678888888888887777777766652211 0 0001
Q ss_pred cc-hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 451 ET-EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (579)
Q Consensus 451 ~~-eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELE 514 (579)
.. .-..+.......+++.+.++.|+...++..+..+.+...|+.--+.+.|+|.++...|.+-.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 11 22336667788888999999999888888888888888888777777777766666655433
No 43
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.22 E-value=46 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhchhhhchhhHH
Q 008065 265 AEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (579)
Q Consensus 265 ~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~d 297 (579)
++||..+.+|..++.+||.++..+..-+.+|..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444555555555555555544444443
No 44
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.63 E-value=37 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008065 524 VEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 524 VEeLm~dIkaAEEEi~RWKeA 544 (579)
||+|+..-...|.||.|-|.-
T Consensus 10 VEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999998864
No 45
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.85 E-value=85 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 475 IVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEE 515 (579)
Q Consensus 475 I~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEE 515 (579)
|-+|+..|.....|.-....++....+.|.++...|++|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888999999999999999998864
No 46
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=32.46 E-value=2.9e+02 Score=25.08 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=57.0
Q ss_pred hchhHHHHHHHHhhhhhhhhh---hHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 008065 191 KRTNEIVEELVGQIDATAKSR---NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (579)
Q Consensus 191 KR~neiveel~~Q~da~~ksr---n~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~el 267 (579)
.|+.+-+.......+.+.|.- .++|-.+++|.+.-.=-+.+||..+...+ ...+.-.+...+-..|+.-+
T Consensus 13 er~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadrKyeE~~RKl~~~ 85 (147)
T 2b9c_A 13 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADRKYEEVARKLVII 85 (147)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHH
Confidence 455555555556666555554 45788888888866655667777663332 33333333344444444445
Q ss_pred HHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhh
Q 008065 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNY 301 (579)
Q Consensus 268 e~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~ 301 (579)
+.+.....++....+.+++.|+..=..+-.+|++
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555443444444444
No 47
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=29.43 E-value=1.4e+02 Score=24.37 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------Hhhchh--hhchhhHHhhhhHHHHHHHHHH
Q 008065 261 DEKVAEIESQGLELRQLVNEYED-------KLKNLE--SHRPLLVDQLNYVSKIHDQVDD 311 (579)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~-------klk~~e--~~r~lL~dql~~vs~ihd~L~~ 311 (579)
..|+..|..|..++.+.+..+|. ||+..+ -|.+- .+...++.+|.++||.
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e-~e~~~l~~~I~~ILYa 66 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE-GENDPVLQRIVDILYA 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-GGTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhc
Confidence 34555566677777777777777 888777 22110 1234566677777663
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.12 E-value=1.7e+02 Score=22.53 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065 505 HRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 505 ~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA 544 (579)
....||.+||.+-..+..--..|..+|.....|+..|+.-
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999998888888889999999999999988853
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.07 E-value=3.5e+02 Score=28.59 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065 464 LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRI 510 (579)
Q Consensus 464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~I 510 (579)
+-..+..|+..|+.|+.-|...=..+-.||..++.|-.+|..++.-|
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666554455666666666655555555444
No 50
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.99 E-value=70 Score=26.27 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 247 ~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
++.++.+.+-+..|+.+|.+||.+..+-.+.|.+|...|
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888776666666666555444
No 51
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=28.36 E-value=2.4e+02 Score=23.50 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=51.3
Q ss_pred HhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch--h-hhchhhHHhhhhHHHHHHH
Q 008065 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL--E-SHRPLLVDQLNYVSKIHDQ 308 (579)
Q Consensus 235 sis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~--e-~~r~lL~dql~~vs~ihd~ 308 (579)
-...+..++-.+.+-+-++. -.+|...|.++++.+.++.+.|...+..++|+ - +.|+-+.-.+..+.+--+.
T Consensus 9 df~~~~~~i~~~l~~~~~~~--ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~ 83 (97)
T 3onj_A 9 DFKTTLEQAKASLAEAPSQP--LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455554443332 34788899999999999999999999999999 5 6788777777766654444
No 52
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=27.89 E-value=4.5e+02 Score=28.92 Aligned_cols=146 Identities=17% Similarity=0.232 Sum_probs=90.1
Q ss_pred HHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 008065 197 VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (579)
Q Consensus 197 veel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~ 276 (579)
||++-+--.+---+...-| ||=-.+-=|.+++++.|+.++--|...+.++-..+..+..+++.-..++..+.++++
T Consensus 337 ve~~Kki~naevae~~~lr----QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~ 412 (602)
T 1cii_A 337 VEGDKKIYNAEVAEWDKLR----QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQ 412 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444333333333333334 663344457788999999888888888888888888887777766767777777777
Q ss_pred HHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHH
Q 008065 277 LVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLT 356 (579)
Q Consensus 277 ~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa 356 (579)
++.+-..|. +....+-|-+.+.+-++..+.+-+ +++. ..||
T Consensus 413 KiAE~KrK~----dE~~aIKDAVkfTAdFykkIsEky----GeKy-------------------------------kkIA 453 (602)
T 1cii_A 413 KIAEEKRKQ----DELKATKDAINFTTEFLKSVSEKY----GAKA-------------------------------EQLA 453 (602)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----CTHH-------------------------------HHHH
T ss_pred HHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------------------------------HHHH
Confidence 766665543 233445566666665555554433 2221 2455
Q ss_pred HHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhH
Q 008065 357 RIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHI 391 (579)
Q Consensus 357 ~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEnedI 391 (579)
+++..+ -+=|.+++.++.+.++.|=+..+
T Consensus 454 kELAe~------fKGKKIRSvDDALaSfEKyk~Nl 482 (602)
T 1cii_A 454 REMAGQ------AKGKKIRNVEEALKTYEKYRADI 482 (602)
T ss_dssp HHHHHT------TTTCBCCCHHHHHHHHHHTHHHH
T ss_pred HHHHHh------cCCCccCCHHHHHHHHHHHhcCh
Confidence 555554 33466777777777777655443
No 53
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.60 E-value=1.6e+02 Score=28.37 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=13.6
Q ss_pred hhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHH
Q 008065 204 IDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENL 253 (579)
Q Consensus 204 ~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l 253 (579)
+|+-++-.+-|.+||++.. +.|+.|=.-+..|..++..|.++++.|
T Consensus 1 md~~~~YK~~~q~ql~~ad----~LV~~L~~En~~L~~ql~~k~~ei~~L 46 (190)
T 4emc_A 1 MDPLTVYKNSVKQQIDSAD----LLVANLVNENFVLSEKLDTKATEIKQL 46 (190)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777888888765 345555555555555555444444444
No 54
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.44 E-value=2.3e+02 Score=23.93 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=51.5
Q ss_pred hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHHH
Q 008065 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKI 305 (579)
Q Consensus 232 LEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e-~~r~lL~dql~~vs~i 305 (579)
.|.-...+..++-.+.+-+-.+. +-.+|...|.++++.+.+..+.|...|..++++. +.|+-+.-.+..+.+=
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~d 93 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKD 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34444555556666666543321 1267788899999999999999999999999998 6677666666655543
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.26 E-value=1.5e+02 Score=23.27 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008065 462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLE 497 (579)
Q Consensus 462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E 497 (579)
..++.-++.+..+..+|+..+..++.|...|+.++.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778888888888888888888888877764
No 56
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.17 E-value=2e+02 Score=24.29 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=56.8
Q ss_pred HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHHHHHHHHH
Q 008065 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVDD 311 (579)
Q Consensus 233 Easis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e-~~r~lL~dql~~vs~ihd~L~~ 311 (579)
|.-...+..++-.+.+-+-.+ +-.+|...|.++++.+.+..+.|...|..++++. +.|+-+.-.+..+.+--+.|-.
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666655444 2367788999999999999999999999999998 6788777777776655444444
Q ss_pred HHh
Q 008065 312 IIK 314 (579)
Q Consensus 312 vi~ 314 (579)
=++
T Consensus 89 elk 91 (102)
T 1vcs_A 89 DFK 91 (102)
T ss_dssp HTH
T ss_pred HHH
Confidence 333
No 57
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.98 E-value=95 Score=24.38 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhchhh
Q 008065 261 DEKVAEIESQGLELRQLVNEYEDKLKNLES 290 (579)
Q Consensus 261 e~ki~ele~E~~~Lk~~v~e~e~klk~~e~ 290 (579)
-.++.+++.++..|.+.+.+|..++..|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 58
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.30 E-value=48 Score=33.66 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=25.9
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
|+.+||++|..+ .+.+..|...+...+.+|. .|+++|..++.+...
T Consensus 5 ~~~~lE~~Il~~-------~~~i~~L~~~l~~~~~ki~-------~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 5 EIMKYEASILTH-------DSSIRYLQEIYNSNNQKIV-------NLKEKVAQLEAQCQE 50 (319)
T ss_dssp -----CTTTTTH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhhCh-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 788999999444 4555666555555566666 666666677666543
No 59
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.73 E-value=2.1e+02 Score=24.12 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=33.6
Q ss_pred hhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch
Q 008065 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (579)
Q Consensus 209 ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~ 288 (579)
|=|.+.||.|.|-.-++ .|+-+-.+|+-+=.+-++. -|..+++|-..|...|..|..|..+|
T Consensus 11 KLRrrl~E~~~q~qaEl--------~sLrrT~~EL~~G~~KL~~----------mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAEL--------NALKRTEEDLKKGHQKLEE----------MVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH--------HHHHHHHHHHHhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888766544 2454555555444444443 44444555455555555555444443
Q ss_pred h
Q 008065 289 E 289 (579)
Q Consensus 289 e 289 (579)
+
T Consensus 73 ~ 73 (78)
T 3iv1_A 73 S 73 (78)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.24 E-value=3.1e+02 Score=23.10 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=13.4
Q ss_pred hHHHHhhhchhHHHHHHHHhhhhhhhhhhHH
Q 008065 184 AVVYGVIKRTNEIVEELVGQIDATAKSRNDV 214 (579)
Q Consensus 184 avaygv~KR~neiveel~~Q~da~~ksrn~a 214 (579)
||.--+=.|..|++..-=.-+++-.+.+++-
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443
No 61
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.16 E-value=2.8e+02 Score=22.62 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHH
Q 008065 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116 (579)
Q Consensus 37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~ 116 (579)
||++.=+..+.+.|.+.++.+.++..=-.=++..| +.-=.++...|.+++.|+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i---------------------------~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTI---------------------------GRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 35666667777778888888777754222222222 211124555677787777
Q ss_pred HHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhh
Q 008065 117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152 (579)
Q Consensus 117 d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~ 152 (579)
.+-- +.--.+-+|-.||.|-.++|=
T Consensus 54 ~EYq-----------~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 54 REYQ-----------DLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----------HHHHHHHhhHHHHHHHHHHHc
Confidence 6621 122235568899999999885
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.09 E-value=2.1e+02 Score=22.24 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008065 506 RMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (579)
Q Consensus 506 ~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAc 545 (579)
...+|.+|+.+-..+..--..|-.+|....+|+..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877777777888888888899998888654
No 63
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.01 E-value=94 Score=22.89 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008065 524 VEGLMLDIAAAEEEISRWKAA 544 (579)
Q Consensus 524 VEeLm~dIkaAEEEi~RWKeA 544 (579)
||+|+-.-...+.|++|-++-
T Consensus 10 vEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 10 LEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998864
No 64
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.65 E-value=1.5e+02 Score=24.25 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=18.6
Q ss_pred hhhhHHHhhhchHHHhhhhhhHHHH
Q 008065 229 VSELEATISGLREEVAKKSSFIENL 253 (579)
Q Consensus 229 VSqLEasis~lr~eva~k~s~~e~l 253 (579)
++.||+.+..+|.+.+.-..+...|
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777766
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.35 E-value=3.2e+02 Score=30.15 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=33.0
Q ss_pred eehh-hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 008065 227 IEVS-ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (579)
Q Consensus 227 IEVS-qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~ 269 (579)
-||| +|+-.|..|+++|-..-+-+-.|+..|.+---+|..||.
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667 899999999999988888888887777766666665555
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.06 E-value=3.7e+02 Score=29.60 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHH-HHHHH------HHHHH-------HH-HHHHHHHHHHH------
Q 008065 460 LAGALENIVKASQLEIVELRHSVEEL---RAESSLL-KEHLE------AQAKE-------LS-HRMKRIEELEE------ 515 (579)
Q Consensus 460 LAsalEniMK~sqlEI~eLrhsLEEs---RsEs~~L-q~l~E------~QaKe-------Ia-~~~~~IkELEE------ 515 (579)
|=++|.+.=+.+..-|++|+.+|++. +.+++.+ +.+++ .|++. |. +++++|..|++
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777778888888887765 4454443 21111 12222 22 34444544443
Q ss_pred -HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008065 516 -KERIANESVEGLMLDIAAAEEEISRWKAAA 545 (579)
Q Consensus 516 -rErvl~enVEeLm~dIkaAEEEi~RWKeAc 545 (579)
+-++|-.||+++..+|+-.|--|.-=..+|
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346666778888888887777766555555
No 67
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=24.00 E-value=3.1e+02 Score=24.16 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=29.6
Q ss_pred chhhHHhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 008065 452 TEEDEIYNLAGALENI----------VKASQLEIVELRHSVEELR 486 (579)
Q Consensus 452 ~eedEv~SLAsalEni----------MK~sqlEI~eLrhsLEEsR 486 (579)
+|..-|++|--.|++. ++.++-||..|.+.|.+++
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899998888877 8888888999988888876
No 68
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.99 E-value=1.1e+02 Score=31.27 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.5
Q ss_pred ccCCCccc
Q 008065 329 SLFLPQET 336 (579)
Q Consensus 329 s~f~~~et 336 (579)
.+|.|.-+
T Consensus 114 ~VF~~~~~ 121 (403)
T 4etp_A 114 KIFDQQDT 121 (403)
T ss_dssp EEECTTCC
T ss_pred EEECCCCc
Confidence 34544433
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.96 E-value=1.5e+02 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 008065 252 NLEKSLIEKDEKVAEIESQGLELRQLV 278 (579)
Q Consensus 252 ~l~ks~~eke~ki~ele~E~~~Lk~~v 278 (579)
+|+...++-+.+|+-|++|---||+.+
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 444445556666666666666666654
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.88 E-value=97 Score=31.78 Aligned_cols=6 Identities=50% Similarity=0.706 Sum_probs=2.6
Q ss_pred hhchhh
Q 008065 290 SHRPLL 295 (579)
Q Consensus 290 ~~r~lL 295 (579)
.-||++
T Consensus 66 RvRP~~ 71 (403)
T 4etp_A 66 RIRPAL 71 (403)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 444443
No 71
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.31 E-value=1.9e+02 Score=24.55 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhh
Q 008065 86 REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158 (579)
Q Consensus 86 r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~eki 158 (579)
|+-|+.++.|..|-.-=.-+|..||+.-.++|+.+-. ++.|+.|+........-.-.||
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E--------------~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCE--------------KDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888777778999999999999997777 5668888876655544443333
No 72
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.88 E-value=3.7e+02 Score=23.22 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=32.8
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
|+++|--+|.+|.-|+..--+...+|+.++.+-+..-. .++..++..|..+|..|..+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH
Confidence 35555555555555555555555555555555444332 255566677777776665443
No 73
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.35 E-value=2.7e+02 Score=21.45 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=32.9
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008065 453 EEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490 (579)
Q Consensus 453 eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~ 490 (579)
..+++..+|+.+.+.-..++..+..|...+..+.+.+.
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45779999999999999999999999999999876654
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.00 E-value=1.4e+02 Score=24.38 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=30.0
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (579)
Q Consensus 244 a~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~ 287 (579)
..|...+..|+..+.+-+.....+..|..+|++.|..|..++..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666777777888888887776643
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.99 E-value=3.1e+02 Score=22.07 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHH
Q 008065 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (579)
Q Consensus 236 is~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ 304 (579)
+..|+.+.-.-..-++.++..+.+.+.+....+.++..|..+|.-+|..+-.++.+-.-....|.-..+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 76
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.70 E-value=1.6e+02 Score=30.33 Aligned_cols=78 Identities=13% Similarity=0.239 Sum_probs=42.2
Q ss_pred hhhHHHHHhhhhchheeeehhhhHH---HhhhchHHHhhhhhhHHHHHHHHHHhH-HHHHHHHHhHHHHHHHHHHHHHHh
Q 008065 210 SRNDVREQMEQRNFEIAIEVSELEA---TISGLREEVAKKSSFIENLEKSLIEKD-EKVAEIESQGLELRQLVNEYEDKL 285 (579)
Q Consensus 210 srn~aReqmeqrny~iAIEVSqLEa---sis~lr~eva~k~s~~e~l~ks~~eke-~ki~ele~E~~~Lk~~v~e~e~kl 285 (579)
.-+..++.+..||+.+. |.++-+ .--.+.-++..--+.-..++|.+..+. +...++-.++..|++.+..++..+
T Consensus 10 ~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 10 EPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp CHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888752 444322 222222223222233334444443221 334556667777777777777777
Q ss_pred hchh
Q 008065 286 KNLE 289 (579)
Q Consensus 286 k~~e 289 (579)
+.++
T Consensus 88 ~~~~ 91 (421)
T 1ses_A 88 REKE 91 (421)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 77
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.68 E-value=2.9e+02 Score=21.62 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch
Q 008065 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (579)
Q Consensus 252 ~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~ 288 (579)
.|...+......+.....|+.+||-.|..|+..|.++
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444455555667778888888888887543
No 78
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.14 E-value=1.7e+02 Score=23.03 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008065 505 HRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAA 545 (579)
Q Consensus 505 ~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAc 545 (579)
....||.+||.+ |+.|..+-.....||.+|+.-+
T Consensus 27 RK~~~~~~Le~~-------v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDK-------VEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888755 7778888888888999998644
No 79
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.81 E-value=4.1e+02 Score=23.01 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=34.5
Q ss_pred ehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 228 EVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
|+++|--+|.+|.-|+..--+...+|+.++.+-+..-. .++..++..|..+|..|..+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555555666666555544332 255567777777777765544
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.30 E-value=73 Score=24.68 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHH
Q 008065 247 SSFIENLEKSLIEKDEKVAEIESQGLEL 274 (579)
Q Consensus 247 ~s~~e~l~ks~~eke~ki~ele~E~~~L 274 (579)
.+.+|.|.....+-..|+.+|..+..+|
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666555555455555333333333
Done!