Query 008065
Match_columns 579
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 17:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008065.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008065hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 60.1 15 0.0011 28.8 7.6 79 212-290 12-92 (110)
2 d2efla1 a.238.1.4 (A:1-288) Fo 51.0 65 0.0047 26.8 11.6 13 153-165 44-56 (288)
3 d2efka1 a.238.1.4 (A:10-288) C 28.0 1.5E+02 0.011 24.3 10.5 12 152-163 34-45 (279)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 25.3 71 0.0051 24.8 6.1 64 239-304 10-74 (89)
5 d2efka1 a.238.1.4 (A:10-288) C 17.4 2.5E+02 0.018 22.9 14.6 39 457-495 93-131 (279)
6 d1seta1 a.2.7.1 (A:1-110) Sery 15.1 2.4E+02 0.017 21.5 9.1 12 419-430 15-26 (110)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 13.9 2.6E+02 0.019 21.3 9.1 28 273-300 69-96 (107)
8 d1gqea_ e.38.1.1 (A:) Polypept 13.1 2.8E+02 0.02 25.9 8.4 61 229-289 8-75 (362)
9 d1lvfa_ a.47.2.1 (A:) Syntaxin 12.7 2.5E+02 0.018 21.7 6.8 56 455-514 38-93 (106)
10 d2efla1 a.238.1.4 (A:1-288) Fo 12.1 3.5E+02 0.026 22.0 18.0 21 554-574 185-205 (288)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=60.14 E-value=15 Score=28.83 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=43.1
Q ss_pred hHHHHHhhhhchheeee-hhhhHHHhhhchHHHhhhhhhHHHHHHHHHH-hHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 212 NDVREQMEQRNFEIAIE-VSELEATISGLREEVAKKSSFIENLEKSLIE-KDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 212 n~aReqmeqrny~iAIE-VSqLEasis~lr~eva~k~s~~e~l~ks~~e-ke~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
+..++.+..|||.+.|. +-.|......+.-++..--+.--.++|++.. +-....++-.++..|++.+..++..++.++
T Consensus 12 e~v~~~l~~R~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 91 (110)
T d1seta1 12 EVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (110)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899887531 2222222222222232222233333444422 223345566688888888888888886666
Q ss_pred h
Q 008065 290 S 290 (579)
Q Consensus 290 ~ 290 (579)
.
T Consensus 92 ~ 92 (110)
T d1seta1 92 A 92 (110)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.01 E-value=65 Score=26.84 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=7.1
Q ss_pred hhhhhhhcccCCC
Q 008065 153 TGIEKISGKVSNF 165 (579)
Q Consensus 153 sg~ekis~k~s~~ 165 (579)
.++.|++.+..+.
T Consensus 44 k~L~kl~~~~~~~ 56 (288)
T d2efla1 44 KQLRNLSKKYQPK 56 (288)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhh
Confidence 3556666555443
No 3
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.03 E-value=1.5e+02 Score=24.34 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=5.8
Q ss_pred hhhhhhhhcccC
Q 008065 152 VTGIEKISGKVS 163 (579)
Q Consensus 152 ~sg~ekis~k~s 163 (579)
..++.|++.+..
T Consensus 34 ak~L~kL~~~~~ 45 (279)
T d2efka1 34 AKQLRSLVKKYL 45 (279)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 344455655443
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.30 E-value=71 Score=24.76 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=48.0
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh-hhchhhHHhhhhHHH
Q 008065 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (579)
Q Consensus 239 lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e-~~r~lL~dql~~vs~ 304 (579)
+-.++..|.+-+-++ +-.+|...|+++++.+.+..+.|+..+..++++- +.|.-+.-.|..+..
T Consensus 10 l~a~i~~kl~~i~~~--~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 10 LTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp HHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 334445555444333 3467899999999999999999999999999998 677777766666653
No 5
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.40 E-value=2.5e+02 Score=22.91 Aligned_cols=39 Identities=10% Similarity=-0.029 Sum_probs=18.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008065 457 IYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEH 495 (579)
Q Consensus 457 v~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l 495 (579)
+-++....+..+|....++..+...+....+.....+..
T Consensus 93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~ 131 (279)
T d2efka1 93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRK 131 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555554444444433
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=15.08 E-value=2.4e+02 Score=21.48 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=7.2
Q ss_pred hhhhhhhccccc
Q 008065 419 ENGLREAGIDFK 430 (579)
Q Consensus 419 E~GLq~vGfgF~ 430 (579)
..+|++-|++|-
T Consensus 15 ~~~l~~R~~~~~ 26 (110)
T d1seta1 15 HRAIREKGVALD 26 (110)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHHHcCCccC
Confidence 346666676653
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=13.88 E-value=2.6e+02 Score=21.32 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhchhhhchhhHHhhh
Q 008065 273 ELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (579)
Q Consensus 273 ~Lk~~v~e~e~klk~~e~~r~lL~dql~ 300 (579)
.|+.+++.++..++.++.+-.-|-+.++
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444444433
No 8
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=13.06 E-value=2.8e+02 Score=25.90 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=41.4
Q ss_pred hhhhHHHhhhchH--HHhhhhhhHHHHHHHHHHhH-----HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065 229 VSELEATISGLRE--EVAKKSSFIENLEKSLIEKD-----EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (579)
Q Consensus 229 VSqLEasis~lr~--eva~k~s~~e~l~ks~~eke-----~ki~ele~E~~~Lk~~v~e~e~klk~~e 289 (579)
+++|...+..||. ++..+...++.|++.++.-+ .+...+.+|...|+..|+.|+.....++
T Consensus 8 i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~le 75 (362)
T d1gqea_ 8 IQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLE 75 (362)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665 56777777777777777653 4666677888888888887776555444
No 9
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.69 E-value=2.5e+02 Score=21.68 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=43.2
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE 514 (579)
Q Consensus 455 dEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELE 514 (579)
.|+..+..-|.+.++++.-.+.+|..++.-+-+..++++. -..+|..+...|....
T Consensus 38 ~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l----~~~ei~~Rr~fi~~~~ 93 (106)
T d1lvfa_ 38 EEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNL----DATELSIRKAFITSTR 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCC----CHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999988887776642 1455666666665544
No 10
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.14 E-value=3.5e+02 Score=21.98 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhh
Q 008065 554 AVEQEFVAQVCFLSCLRREQY 574 (579)
Q Consensus 554 aveqEf~~q~~~l~~~~~~~~ 574 (579)
.+..++...|..++..+.+-|
T Consensus 185 ~a~~~Y~~~v~~~n~~~~~~~ 205 (288)
T d2efla1 185 DSKADYSSILQKFNHEQHEYY 205 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777666544
Done!