BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008066
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 166/554 (29%), Positives = 255/554 (46%), Gaps = 76/554 (13%)
Query: 51 CKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYN-VTIHWHGVRQMRTAWADGPEFV 109
C + + +NG +PGPT+ N GD++VV++TNK V IHWHG+ Q T WADG +
Sbjct: 19 CNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASI 78
Query: 110 TQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLR-ATVYGALIIHPKEGSSYPFPKPKRE 168
+QC I PG ++ Y FT+ GT ++H H R A +YG+LI+ P +G PF E
Sbjct: 79 SQCAINPGETFFYNFTVD-NPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPF-HYDGE 136
Query: 169 TPILLGEWW-----------DANPIDVVRQAT------RTGAAPNISDAYTINGQPGDLY 211
+LL +WW + PI + + R +I+ Y N +P L
Sbjct: 137 INLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLK 196
Query: 212 NCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIML 271
S + + +T +R+ ++ L F I NHQ VV AD +Y++PF TS I +
Sbjct: 197 GSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDI 256
Query: 272 GPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRP 331
G++ VLI DQ T +L Y +S P
Sbjct: 257 YSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLT---LLNY------LPNSVSKLP 307
Query: 332 VMPP--LPAFNDTATVTAFTKKLRSPQKV-EVPTDIDESLFFTVGLGLNNCPRNFRSSRC 388
PP PA++D FT ++ + + P + +F L N +
Sbjct: 308 TSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFL---LNTQNVINGY----- 359
Query: 389 QGPNGTRFTASMNNVSFVLP-------SNFSLLQAHHHGIPGVFTTDFPANPP---FKFD 438
++N+VS LP ++LL A F NPP F D
Sbjct: 360 -------VKWAINDVSLALPPTPYLGAMKYNLLHA------------FDQNPPPEVFPED 400
Query: 439 YTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTP---ENHPIHIHGYDFYIIAEG 495
Y + + + G +Y+ + G V ++LQ+ ++ E HP H+HG+DF+++ G
Sbjct: 401 YDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYG 460
Query: 496 FGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 555
G F+ + ++S NL +PPLRNTV + GW IRFVADNPGVW HCH++ H+ G+ +
Sbjct: 461 DGKFSAEEESS-LNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGV 519
Query: 556 AFLVENGVTELEKL 569
F GV ++ ++
Sbjct: 520 VF--AEGVEKVGRI 531
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/526 (26%), Positives = 210/526 (39%), Gaps = 79/526 (15%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWH 93
D I V + I VN ++P P + N GD + V + + +IHWH
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP FV QCPI G ++ Y F + Q GT W+H+H S+ + G +++
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLY 211
+ P++ + T I L +W+ A + G+ +DA ING G
Sbjct: 127 YDPQDPHKSLYDVDDDSTVITLADWY--------HLAAKVGSPVPTADATLINGL-GRSI 177
Query: 212 NCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIML 271
+ + D V+ + G+ R+++ + F+I H TV+ AD+ LKP T I +
Sbjct: 178 DTLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQI 237
Query: 272 GPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRP 331
Q ++ DQ FD +AIL Y A P + S P
Sbjct: 238 FAAQRYSFVLNADQ--DVGNYWIRALPNSGTRNFDGGVNSAILRYDGA-APVEPTTSQTP 294
Query: 332 VMPPLPAFNDTATVTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGP 391
PL T T SP P +D +L G
Sbjct: 295 STNPL--VESALTTLEGTAAPGSP----APGGVDLALNMAFGFA---------------- 332
Query: 392 NGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPV 451
G +FT +N SF P+ LLQ + G ++S +
Sbjct: 333 -GGKFT--INGASFTPPTVPVLLQI----LSG--------------------AQSAQDLL 365
Query: 452 PGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLV 511
P +Y L + ++I L T+ HP H+HG+ F ++ +S +N
Sbjct: 366 PSGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVVRSA--------GSSTYNYE 417
Query: 512 DPPLRNTV--GVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 555
+P R+ V G P G IRF DNPG W +HCH+D H+ G A+
Sbjct: 418 NPVYRDVVSTGSP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 210/511 (41%), Gaps = 83/511 (16%)
Query: 57 ITVNGMYPGPTLEVNNGDT----LVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQ 111
I VN ++P P + N GD LV ++TN T IHWHG Q T WADGP F+ Q
Sbjct: 25 IVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAFINQ 84
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKPKRET 169
CPI G S+ Y F + GQ GT W+H+H S+ + G +++ P + + + T
Sbjct: 85 CPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVDDEST 144
Query: 170 PILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDLYNCSSQDTVVVPIDSGET 228
I L +W+ A + G P +D+ ING G + + D V+ + G+
Sbjct: 145 VITLADWY--------HVAAKLGPRFPKGADSTLINGL-GRSTSTPTADLAVISVTKGKR 195
Query: 229 NLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQXXX 288
R+++ + F+I +HQ TV+ AD +P T I + Q ++ +Q
Sbjct: 196 YRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQ--D 253
Query: 289 XXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAF 348
F + +AIL Y A P P N T T
Sbjct: 254 VDNYWIRANPNFGTTGFADGVNSAILRYDDAD-------------PVEPVTNQTGTTLLL 300
Query: 349 TKKLRSPQKVEVPTDIDESLFFTVGLGLN-NCPRNFRSSRCQGPNGTRFTASMNNVSFVL 407
L + VP + + G LN N NF +GT F +N SF
Sbjct: 301 ETDLHPLTSMPVPGNPTQG-----GADLNLNMAFNF--------DGTNFF--INGESFTP 345
Query: 408 PSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQI 467
P+ LLQ I G N ++ L +P +Y L S ++I
Sbjct: 346 PTVPVLLQI----ISG-----------------ANTAQDL---LPSGSVYSLPSNSSIEI 381
Query: 468 VLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTV--GVPVGG 525
T+ HP H+HG+ F ++ ++ +N DP R+ V G P G
Sbjct: 382 TFPATTAAPGAPHPFHLHGHVFAVVRSA--------GSTSYNYDDPVWRDVVSTGTPQAG 433
Query: 526 WAV-IRFVADNPGVWLMHCHLDVHITWGLAM 555
V IRF DNPG W +HCH+D H+ G A+
Sbjct: 434 DNVTIRFQTDNPGPWFLHCHIDFHLDAGFAV 464
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 206/526 (39%), Gaps = 79/526 (15%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWH 93
D I V + I VN ++P P + N GD + V + + +IHWH
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP FV QCPI G ++ Y F + Q GT W+H+H S+ + G +++
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLY 211
+ P + + + T I L +W+ A + GA +DA ING G
Sbjct: 127 YDPNDPHASLYDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GRSA 177
Query: 212 NCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIML 271
+ D V+ + G+ R+++ + F+I H TV+ AD+ LKP T + +
Sbjct: 178 ATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQI 237
Query: 272 GPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRP 331
Q ++ DQ F T +AIL Y A + P
Sbjct: 238 FAAQRYSFVLNADQ--DVDNYWIRALPNSGTQNFAGGTNSAILRYDGA-------APVEP 288
Query: 332 VMPPLPAFNDTATVTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGP 391
P+ N T K + P +D +L G
Sbjct: 289 TTSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFA---------------- 332
Query: 392 NGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPV 451
G FT +N SF P+ LLQ + G ++S +
Sbjct: 333 -GGNFT--INGASFTPPTVPVLLQI----LSG--------------------AQSAADLL 365
Query: 452 PGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLV 511
P +Y L + ++I L T+ HP H+HG+ F ++ +S +N
Sbjct: 366 PAGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVRSA--------GSSTYNYA 417
Query: 512 DPPLRNTV--GVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 555
+P R+ V G P G IRF DNPG W +HCH+D H+ G A+
Sbjct: 418 NPVYRDVVSTGAP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 206/526 (39%), Gaps = 79/526 (15%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWH 93
D I V + I VN ++P P + N GD + V + + +IHWH
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP FV QCPI G ++ Y F + Q GT W+H+H S+ + G +++
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLY 211
+ P + + + T I L +W+ A + GA +DA ING G
Sbjct: 127 YDPNDPHASLYDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLINGL-GRSA 177
Query: 212 NCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIML 271
+ D V+ + G+ R+++ + F+I H TV+ AD+ LKP T + +
Sbjct: 178 ATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQI 237
Query: 272 GPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRP 331
Q ++ DQ F T +AIL Y A + P
Sbjct: 238 FAAQRYSFVLNADQ--DVDNYWIRALPNSGTQNFAGGTNSAILRYDGA-------APVEP 288
Query: 332 VMPPLPAFNDTATVTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGP 391
P+ N T K + P +D +L G
Sbjct: 289 TTSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFA---------------- 332
Query: 392 NGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPV 451
G FT +N SF P+ LLQ + G ++S +
Sbjct: 333 -GGNFT--INGASFTPPTVPVLLQI----LSG--------------------AQSAADLL 365
Query: 452 PGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLV 511
P +Y L + ++I L T+ HP H+HG+ F ++ +S +N
Sbjct: 366 PAGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVRSA--------GSSTYNYA 417
Query: 512 DPPLRNTV--GVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 555
+P R+ V G P G IRF DNPG W +HCH+D H+ G A+
Sbjct: 418 NPVYRDVVSTGAP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 143/530 (26%), Positives = 211/530 (39%), Gaps = 82/530 (15%)
Query: 40 FVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKV----TNKARYNVT-IHWHG 94
V+ PV + I VNG++P P + GD + V TN T IHWHG
Sbjct: 8 LVVANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHG 67
Query: 95 VRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH 153
Q T WADGP FV QCPI G S+ Y F + Q GT W+H+H S+ + G +++
Sbjct: 68 FFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVY 127
Query: 154 -PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDLY 211
PK+ + + T I L +W+ A R G P +DA ING G
Sbjct: 128 DPKDPHASRYDVDNESTVITLTDWY--------HTAARLGPRFPLGADATLINGL-GRSA 178
Query: 212 NCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIML 271
+ + V+ + G+ R+++ + F+I H TV+ D +P I +
Sbjct: 179 STPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQI 238
Query: 272 GPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRP 331
Q ++ +Q F +AIL Y+ AP
Sbjct: 239 FAAQRYSFVLNANQ--TVGNYWIRANPNFGTVGFAGGINSAILRYQGAPVAEPTTTQTTS 296
Query: 332 VMPPLPAFNDTATVTAFTKKLRSP-QKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQG 390
V+P + T R P P +D++L N NF
Sbjct: 297 VIPLIE--------TNLHPLARMPVPGSPTPGGVDKAL---------NLAFNF------- 332
Query: 391 PNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQP 450
NGT F +NN SF P+ LLQ + G +++
Sbjct: 333 -NGTNFF--INNASFTPPTVPVLLQI----LSG--------------------AQTAQDL 365
Query: 451 VPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNL 510
+P +Y L S ++I L T++ HP H+HG+ F ++ ++ +N
Sbjct: 366 LPAGSVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSA--------GSTTYNY 417
Query: 511 VDPPLRNTV--GVPVGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAMAF 557
DP R+ V G P G V IRF DNPG W +HCH+D H+ G A+ F
Sbjct: 418 NDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVF 467
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 133/515 (25%), Positives = 215/515 (41%), Gaps = 80/515 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWHGVRQMRTAWADGPE 107
T I VNG++ GP + D + V N +IHWHG+ Q T WADG +
Sbjct: 22 TRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGAD 80
Query: 108 FVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKP 165
V QCPI PG ++ Y+FT G GT W+H+H + + G ++I+ + + + +
Sbjct: 81 GVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDED 140
Query: 166 KRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDS 225
T I L +W+ + + + A P DA ING+ G + + +V ++
Sbjct: 141 DENTIITLADWY-----HIPAPSIQGAAQP---DATLINGK-GRYVGGPAAELSIVNVEQ 191
Query: 226 GETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQ 285
G+ +R+I+ + F+I H+ T++ D +P T + + GQ ++ +Q
Sbjct: 192 GKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQ 251
Query: 286 XXXX--XXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTA 343
F N +AIL Y A A S P PA + A
Sbjct: 252 PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA-ANADPTTSANPN----PAQLNEA 306
Query: 344 TVTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNV 403
+ A + + P D +L F +G +G RFT +N
Sbjct: 307 DLHALIDP--AAPGIPTPGAADVNLRFQLGF-----------------SGGRFT--INGT 345
Query: 404 SFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGS 463
++ PS +LLQ + ++S +P +Y+L
Sbjct: 346 AYESPSVPTLLQIM------------------------SGAQSANDLLPAGSVYELPRNQ 381
Query: 464 RVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPV 523
V++V+ + P HP H+HG+ F ++ +S +N V+P R+ V + V
Sbjct: 382 VVELVVPAGVLGGP--HPFHLHGHAFSVVR--------SAGSSTYNFVNPVKRDVVSLGV 431
Query: 524 GGWAV-IRFVADNPGVWLMHCHLDVHITWGLAMAF 557
G V IRFV DNPG W HCH++ H+ GLA+ F
Sbjct: 432 TGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 133/515 (25%), Positives = 215/515 (41%), Gaps = 80/515 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWHGVRQMRTAWADGPE 107
T I VNG++ GP + D + V N +IHWHG+ Q T WADG +
Sbjct: 22 TRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGAD 80
Query: 108 FVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKP 165
V QCPI PG ++ Y+FT G GT W+H+H + + G ++I+ + + + +
Sbjct: 81 GVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDED 140
Query: 166 KRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDS 225
T I L +W+ + + + A P DA ING+ G + + +V ++
Sbjct: 141 DENTIITLADWY-----HIPAPSIQGAAQP---DATLINGK-GRYVGGPAAELSIVNVEQ 191
Query: 226 GETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQ 285
G+ +R+I+ + F+I H+ T++ D +P T + + GQ ++ +Q
Sbjct: 192 GKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQ 251
Query: 286 XXXX--XXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTA 343
F N +AIL Y A A S P PA + A
Sbjct: 252 PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA-ANADPTTSANPN----PAQLNEA 306
Query: 344 TVTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNV 403
+ A + + P D +L F +G +G RFT +N
Sbjct: 307 DLHALIDP--AAPGIPTPGAADVNLRFQLGF-----------------SGGRFT--INGT 345
Query: 404 SFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGS 463
++ PS +LLQ + ++S +P +Y+L
Sbjct: 346 AYESPSVPTLLQIM------------------------SGAQSANDLLPAGSVYELPRNQ 381
Query: 464 RVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPV 523
V++V+ + P HP H+HG+ F ++ +S +N V+P R+ V + V
Sbjct: 382 VVELVVPAGVLGGP--HPFHLHGHAFSVVR--------SAGSSTYNFVNPVKRDVVSLGV 431
Query: 524 GGWAV-IRFVADNPGVWLMHCHLDVHITWGLAMAF 557
G V IRFV DNPG W HCH++ H+ GLA+ F
Sbjct: 432 TGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/514 (25%), Positives = 212/514 (41%), Gaps = 80/514 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGDTLVVKV----TNKARYNVT-IHWHGVRQMRTAWADGPE 107
+ + VNG+ PGP + N GD + V TN T +HWHG Q T WADGP
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 108 FVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKP 165
F+ QCPI PG S+ Y F + Q GT W+H+H S+ + G +++ P + + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 166 KRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDLYNCSSQDTVVVPID 224
+T I L +W+ A + G P +DA ING+ G + +S + V+ +
Sbjct: 141 NDDTVITLADWY--------HTAAKLGPRFPAGADATLINGK-GRAPSDTSAELSVIKVT 191
Query: 225 SGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGD 284
G+ R+++ + F+I H T++ D+S +P + I + Q ++ +
Sbjct: 192 KGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFVLNAN 251
Query: 285 QXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTAT 344
Q F+ +AIL Y AP + + + PL N
Sbjct: 252 Q--AVDNYWIRANPNFGNVGFNGGINSAILRYDGAPA-VEPTTNQTTSVKPLNEVNLHPL 308
Query: 345 VTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVS 404
V+ T SP V I+ + F NG+ F +N S
Sbjct: 309 VS--TPVPGSPSSGGVDKAINMAFNF---------------------NGSNFF--INGAS 343
Query: 405 FVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSR 464
FV PS LLQ + G +++ +P + L +
Sbjct: 344 FVPPSVPVLLQI----LSG--------------------AQTAQDLLPSGSVXVLPSNAS 379
Query: 465 VQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTV--GVP 522
++I T+ HP H+HG+ F ++ ++ +N +P R+ V G P
Sbjct: 380 IEISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYSNPIFRDVVSTGTP 431
Query: 523 VGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAM 555
G V IRF+ +NPG W +HCH+D H+ G A+
Sbjct: 432 AAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 204/512 (39%), Gaps = 86/512 (16%)
Query: 57 ITVNGMYPGPTLEVNNGDTLVVKVTNKARYNV-----TIHWHGVRQMRTAWADGPEFVTQ 111
+ VNG+ P P + N GD + V ++ + +IHWHG Q T WADGP FV Q
Sbjct: 25 VVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQ 84
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKPKRET 169
CPI G S+ Y F + Q GT W+H+H S+ + G +++ P + + + +T
Sbjct: 85 CPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDNDDT 144
Query: 170 PILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDLYNCSSQDTVVVPIDSGET 228
I L +W+ A + G P SD+ ING G + D V+ + G+
Sbjct: 145 VITLADWY--------HVAAKLGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKVTQGKR 195
Query: 229 NLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQXXX 288
R+++ + F+I NH T++ AD+ +P I + Q ++ Q
Sbjct: 196 YRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDASQ--P 253
Query: 289 XXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAF 348
F +AIL Y AP + P P +
Sbjct: 254 VDNYWIRANPAFGNTGFAGGINSAILRYDGAPEIEPTSVQTTPTKP----------LNEV 303
Query: 349 TKKLRSPQKV---EVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSF 405
SP V P +D+ L N NF NGT F +N+ +F
Sbjct: 304 DLHPLSPMPVPGSPEPGGVDKPL---------NLVFNF--------NGTNFF--INDHTF 344
Query: 406 VLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRV 465
V PS LLQ +G +++ VP ++ L S +
Sbjct: 345 VPPSVPVLLQI----------------------LSG--AQAAQDLVPEGSVFVLPSNSSI 380
Query: 466 QIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTV--GVPV 523
+I T+ HP H+HG+ F ++ +S +N +P R+ V G P
Sbjct: 381 EISFPATANAPGFPHPFHLHGHAFAVVRSA--------GSSVYNYDNPIFRDVVSTGQP- 431
Query: 524 GGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 555
G IRF +NPG W +HCH+D H+ G A+
Sbjct: 432 GDNVTIRFETNNPGPWFLHCHIDFHLDAGFAV 463
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/514 (26%), Positives = 209/514 (40%), Gaps = 80/514 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGDTLVVKV----TNKARYNVT-IHWHGVRQMRTAWADGPE 107
+ + VNG+ PGP + N GD + V TN T +HWHG Q T WADGP
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 108 FVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKP 165
F+ QCPI PG S+ Y F + Q GT W+H+H S+ + G +++ P + + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 166 KRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDLYNCSSQDTVVVPID 224
+T I L +W+ A + G A PN +D+ ING+ G + SS VV +
Sbjct: 141 NDDTTITLADWY--------HTAAKLGPAFPNGADSTLINGK-GRAPSDSSAQLSVVSVT 191
Query: 225 SGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGD 284
G+ R+++ + F+I H T++ D+ +P T I + Q + +
Sbjct: 192 KGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLNAN 251
Query: 285 QXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTAT 344
Q F+ +AIL Y AP + + PL N
Sbjct: 252 Q--AVDNYWIRANPNFGNVGFNGGINSAILRYDGAPA-VEPTTNQSTSTQPLNETNLHPL 308
Query: 345 VTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVS 404
V+ T SP V I+ + F NG+ F +N S
Sbjct: 309 VS--TPVPGSPAAGGVDKAINMAFNF---------------------NGSNFF--INGAS 343
Query: 405 FVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSR 464
F PS LLQ + G +++ +P + L +
Sbjct: 344 FTPPSVPVLLQI----LSG--------------------AQTAQDLLPSGSVXTLPSNAS 379
Query: 465 VQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTV--GVP 522
++I T+ HP H+HG+ F ++ ++ +N +P R+ V G P
Sbjct: 380 IEISFPATAAAPGAPHPFHLHGHVFAVVRSA--------GSTVYNYSNPIFRDVVSTGTP 431
Query: 523 VGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAM 555
G V IRF+ +NPG W +HCH+D H+ G A+
Sbjct: 432 AAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 138/534 (25%), Positives = 213/534 (39%), Gaps = 92/534 (17%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKV----TNKARYNVT-IHWH 93
D I V + + VNG+ PGP + N GD + V TN T IHWH
Sbjct: 7 DLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP F+ QCPI PG S+ Y F + Q GT W+H+H S+ + G ++
Sbjct: 67 GFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDL 210
+ P + + + +T I L +W+ A + G P +DA ING+ G
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY--------HTAAKLGPRFPGGADATLINGK-GRA 177
Query: 211 YNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIM 270
+ S + V+ + G+ R+++ N F+I H T++ D+ +P I
Sbjct: 178 PSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQ 237
Query: 271 LGPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIR 330
+ Q ++ +Q FD +AIL Y AP
Sbjct: 238 IFAAQRYSFVLDANQ--AVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVE------- 288
Query: 331 PVMPPLPAFNDTATVTAFTK-KLRSPQKVEVPTD-----IDESLFFTVGLGLNNCPRNFR 384
P N T +V + L VP +D+++ N NF
Sbjct: 289 ------PTTNQTTSVKPLNEVDLHPLVSTPVPGSPSSGGVDKAI---------NMAFNF- 332
Query: 385 SSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVS 444
NG+ F +N SFV P+ LLQ + G +
Sbjct: 333 -------NGSNFF--INGASFVPPTVPVLLQI----LSG--------------------A 359
Query: 445 RSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTD 504
++ +P +Y L + ++I T+ HP H+HG+ F ++
Sbjct: 360 QTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA--------G 411
Query: 505 TSKFNLVDPPLRNTV--GVPVGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAM 555
++ +N +P R+ V G P G V IRF +NPG W +HCH+D H+ G A+
Sbjct: 412 STVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 138/535 (25%), Positives = 213/535 (39%), Gaps = 94/535 (17%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKV----TNKARYNVT-IHWH 93
D I V + + VNG+ PGP + N GD + V TN T IHWH
Sbjct: 7 DLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP F+ QCPI PG S+ Y F + Q GT W+H+H S+ + G ++
Sbjct: 67 GFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDL 210
+ P + + + +T I L +W+ A + G P +DA ING+ G
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY--------HTAAKLGPRFPGGADATLINGK-GRA 177
Query: 211 YNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIM 270
+ S + V+ + G+ R+++ N F+I H T++ D+ +P I
Sbjct: 178 PSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQ 237
Query: 271 LGPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIR 330
+ Q ++ +Q FD +AIL Y AP
Sbjct: 238 IFAAQRYSFVLDANQ--AVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVE------- 288
Query: 331 PVMPPLPAFNDTATVTAFTKKLRSPQKVEVPT-------DIDESLFFTVGLGLNNCPRNF 383
P N T +V + P V P +D+++ N NF
Sbjct: 289 ------PTTNQTTSVKPLNEVDLHP-LVSTPVPGAPSSGGVDKAI---------NMAFNF 332
Query: 384 RSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNV 443
NG+ F +N SFV P+ LLQ + G
Sbjct: 333 --------NGSNFF--INGASFVPPTVPVLLQI----LSG-------------------- 358
Query: 444 SRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKT 503
+++ +P +Y L + ++I T+ HP H+HG+ F ++
Sbjct: 359 AQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA-------- 410
Query: 504 DTSKFNLVDPPLRNTV--GVPVGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAM 555
++ +N +P R+ V G P G V IRF +NPG W +HCH+D H+ G A+
Sbjct: 411 GSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 126/510 (24%), Positives = 197/510 (38%), Gaps = 77/510 (15%)
Query: 57 ITVNGMYPGPTLEVNNGDTLVVKVTNK-----ARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
+ G +PGP + N GD + N+ + +IHWHG Q T WADGP F+TQ
Sbjct: 26 VNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQ 85
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKPKRET 169
CPI G S++Y F + G GT W+H+H ++ + G +++ P + + + T
Sbjct: 86 CPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTT 145
Query: 170 PILLGEWWDANPIDVVRQATRTGAAPNI-SDAYTINGQPGDLYNCSSQDTVVVPIDSGET 228
I L +W+ A GA I +D+ I+G N ++ V+ ++ G+
Sbjct: 146 IITLADWYHV-------LAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKR 198
Query: 229 NLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQXXX 288
+R+++ + F+I H T++ D + T I + Q ++ +Q
Sbjct: 199 YRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQ--P 256
Query: 289 XXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAF 348
FD +AIL Y A P+ + T
Sbjct: 257 VGNYWIRANPNSGGEGFDGGINSAILRYDGA-----------TTADPVTVASTVHTKCLI 305
Query: 349 TKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLP 408
L + VP + + G +C N G F +N VSF P
Sbjct: 306 ETDLHPLSRNGVPGNPHQ--------GGADCNLNLSLGFACG----NFV--INGVSFTPP 351
Query: 409 SNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIV 468
+ LLQ N + L +P + L S ++I
Sbjct: 352 TVPVLLQ---------------------ICSGANTAADL---LPSGSVISLPSNSTIEIA 387
Query: 469 LQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGV-PVGGWA 527
L + P HP H+HG+DF + + S N DP R+ V + VG
Sbjct: 388 LPAGAAGGP--HPFHLHGHDFAV--------SESASNSTSNYDDPIWRDVVSIGGVGDNV 437
Query: 528 VIRFVADNPGVWLMHCHLDVHITWGLAMAF 557
IRF DNPG W +HCH+D H+ G A+ F
Sbjct: 438 TIRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 53 THNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQ 111
T + +T NG PGP + + GD L++ VTN +N T IHWHG+RQ+ + DG VTQ
Sbjct: 85 TRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRAT-VYGALIIHPKEGSSYPFPKPKRETP 170
CPI PG + TY+F + Q GT W+H+H S ++G LII+ + Y +
Sbjct: 145 CPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPATADY-----DEDVG 198
Query: 171 ILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQ---------DTVVV 221
++ + W + + R GA P + + +NG + ++CS+ +
Sbjct: 199 VIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGT--NTFDCSASTDPNCVGGGKKFEL 255
Query: 222 PIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLI 281
G LR+IN G++ F I NH TV+ D + P+TT +++G GQ DV++
Sbjct: 256 TFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIV 315
Query: 282 KGD 284
+ +
Sbjct: 316 EAN 318
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVW 539
HPIH+HG+DF+I+A+ FN +KFNLV+PP R+ +P G+ I F DNPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 540 LMHCHLDVHITWGLAMAFL 558
L+HCH+ H + GLAM F+
Sbjct: 523 LLHCHIAWHASEGLAMQFV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 53 THNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQ 111
T + +T NG PGP + + GD L++ VTN +N T IHWHG+RQ+ + DG VTQ
Sbjct: 85 TRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRAT-VYGALIIHPKEGSSYPFPKPKRETP 170
CPI PG + TY+F + Q GT W+H+H S ++G LII+ + Y +
Sbjct: 145 CPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPATADY-----DEDVG 198
Query: 171 ILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQ---------DTVVV 221
++ + W + + R GA P + + +NG + ++CS+ +
Sbjct: 199 VIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGT--NTFDCSASTDPNCVGGGKKFEL 255
Query: 222 PIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLI 281
G LR+IN G++ F I NH TV+ D + P+TT +++G GQ DV++
Sbjct: 256 TFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIV 315
Query: 282 KGD 284
+ +
Sbjct: 316 EAN 318
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVW 539
HPIH+HG+DF+I+A+ FN +KFNLV+PP R+ +P G+ I F DNPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 540 LMHCHLDVHITWGLAMAFL 558
L+HCH+ H + G+AM F+
Sbjct: 523 LLHCHIAWHASEGMAMQFV 541
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/520 (25%), Positives = 206/520 (39%), Gaps = 94/520 (18%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGPEFVT 110
K+ IT NG +P P + VN GD + + +TN N ++H+HG+ Q TA DG F+T
Sbjct: 20 KSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLT 79
Query: 111 QCPIRPGMSYTYRFTIQGQEGTLWWHAHSS-WLRATVYGALIIHPKEGSSYPFPKPKRET 169
QCPI PG + Y FT+ GT W+H+H+ + G II + S+P+ E
Sbjct: 80 QCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFII---KDDSFPYDY-DEEL 135
Query: 170 PILLGEWWDANPIDVVRQATR----TGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDS 225
+ L EW+ D+ + TGA P I +N + +
Sbjct: 136 SLSLSEWYHDLVTDLTKSFMSVYNPTGAEP-IPQNLIVNNTMN----------LTWEVQP 184
Query: 226 GETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQ 285
T LLR++N G +F I +H+ TVV D + T ++ + Q VL+
Sbjct: 185 DTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVH--- 241
Query: 286 XXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPCPAKKGLSIRPVM-----PPLPAFN 340
FD+T I P+ L+ M LP N
Sbjct: 242 -----TKNDTDKNFAIMQKFDDTMLDVI--------PSDLQLNATSYMVYNKTAALPTQN 288
Query: 341 DTATVTAFTKK--LRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTA 398
++ F L+ +K + + D + TV + ++N NG + A
Sbjct: 289 YVDSIDNFLDDFYLQPYEKEAIYGEPDHVI--TVDVVMDNL-----------KNGVNY-A 334
Query: 399 SMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYK 458
NN+++ P +L+ G + + +N T +
Sbjct: 335 FFNNITYTAPKVPTLMTVLSSGDQANNSEIYGSN---------------------THTFI 373
Query: 459 LEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIA------EGFG----NFNPKTDTSKF 508
LE V+IVL + T HP H+HG+ F I + G +F+P +
Sbjct: 374 LEKDEIVEIVLNNQDTGT---HPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFP 430
Query: 509 NLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVH 548
P R+T+ V VIRF ADNPGVW HCH++ H
Sbjct: 431 EY--PMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 127/289 (43%), Gaps = 19/289 (6%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWH 93
+ V+ V + + + VNG PGP + N GD + V N + ++HWH
Sbjct: 7 NLVVTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP FV QCPI G S+ Y F+ Q GT W+H+H S+ G ++
Sbjct: 67 GFFQKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTG-AAPNISDAYTINGQPGDL 210
+ P + S+ + T I L +W+ A + G A P +DA INGQ G
Sbjct: 127 YDPNDPSANLYDVDNLNTVITLTDWY--------HTAAQNGPAKPGGADATLINGQ-GRG 177
Query: 211 YNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIM 270
+ S D V+ + +G+ R++++ + F+I HQ T++ D+ ++P I
Sbjct: 178 PSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQ 237
Query: 271 LGPGQTTDVLIKGDQXXXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSA 319
+ Q ++ +Q F N +AIL Y A
Sbjct: 238 IYAAQRYSFILNANQ--AVNNYWIRANPNQGNVGFTNGINSAILRYSGA 284
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 456 LYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPL 515
+Y L + ++I TS HP H+HG+ F ++ ++ +N DP
Sbjct: 371 VYSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVVRSA--------GSTTYNYNDPIF 422
Query: 516 RNTV--GVPVGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAMAF 557
R+TV G P V IRF +NPG W +HCH+D H+ G A+ F
Sbjct: 423 RDTVSTGTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 17/255 (6%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-----YNVTIHWH 93
D I V T + NG++PGP + N GD + V + TIHWH
Sbjct: 7 DLTISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G+ Q T WADGP FV QCPI G S+ Y FT+ Q GT W+H+H S+ + G L++
Sbjct: 67 GLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDL 210
+ P + + + T I L +W+ A + G A P +D+ ING G
Sbjct: 127 YDPSDPYASMYDVDDDTTVITLSDWY--------HTAAKLGPAFPPNADSVLINGL-GRF 177
Query: 211 YNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIM 270
++ D V+ ++ + R+++ + F+I H T++ D +P I
Sbjct: 178 AGGNASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQ 237
Query: 271 LGPGQTTDVLIKGDQ 285
+ Q ++ Q
Sbjct: 238 IFASQRYSFVLNATQ 252
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 444 SRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPEN-----HPIHIHGYDFYIIAEGFGN 498
++S +P +Y L S +++ T++ N HP H+HG+ F ++
Sbjct: 359 AQSASDLLPTGSVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVRSA--- 415
Query: 499 FNPKTDTSKFNLVDPPLRNTV--GVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMA 556
+S +N V+P R+TV G P G IRF DN G W +HCH+D H+ G A+
Sbjct: 416 -----GSSDYNYVNPVRRDTVSTGNP-GDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIV 469
Query: 557 F 557
F
Sbjct: 470 F 470
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 17/255 (6%)
Query: 39 DFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKV----TNKARYNVT-IHWH 93
D I V + + VNG PGP + N GD + V TN T IHWH
Sbjct: 7 DLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALII 152
G Q T WADGP F+ QCPI G S+ Y F + Q GT W+H+H S+ + G ++
Sbjct: 67 GFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 153 H-PKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAA-PNISDAYTINGQPGDL 210
+ P + ++ + +T I L +W+ A + G A P +DA ING+ G
Sbjct: 127 YDPNDPAADLYDVDNDDTVITLVDWY--------HVAAKLGPAFPLGADATLINGK-GRS 177
Query: 211 YNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIM 270
+ ++ D V+ + G+ R+++ + F+I H T++ D+ P I
Sbjct: 178 PSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQ 237
Query: 271 LGPGQTTDVLIKGDQ 285
+ Q +++ +Q
Sbjct: 238 IFAAQRYSFVLEANQ 252
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 451 VPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNL 510
+P +Y L + ++I T+ HP H+HG+ F ++ ++ +N
Sbjct: 366 LPSGSVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVR--------SAGSTVYNY 417
Query: 511 VDPPLRNTV--GVPVGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAMAF 557
+P R+ V G P G V IRF DNPG W +HCH+D H+ G A+ F
Sbjct: 418 DNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 13/282 (4%)
Query: 11 SFGFFLGLVLLIASNALLSFANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEV 70
SF LV+L ++ L+ A H ++ A + +T G P +
Sbjct: 3 SFASLKSLVVLSLTSLSLAATVALDLH---ILNANLDPDGTGARSAVTAEGTTIAPLITG 59
Query: 71 NNGDTLVVKVTNK-----ARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFT 125
N D + V ++ R +IHWHG Q T DGP FV QCPI P S+ Y F
Sbjct: 60 NIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFV 119
Query: 126 IQGQEGTLWWHAH-SSWLRATVYGALIIH-PKEGSSYPFPKPKRETPILLGEWWDANPID 183
+ GQ GT W+H+H S+ + GA +++ P + + T I + +W+ +
Sbjct: 120 VPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTV 179
Query: 184 VVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLF 243
+ + A D ING + N S+ VV + SG+ R++++
Sbjct: 180 LFPNPNKAPPA---PDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYA 236
Query: 244 FTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQ 285
F+I H+ TV+ D +P T + + GQ V+++ +Q
Sbjct: 237 FSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQ 278
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 451 VPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNL 510
+PG + L ++I SI NHP H+HG++F ++ +S +N
Sbjct: 393 LPGGAVISLPANQVIEI-----SIPGGGNHPFHLHGHNFDVVR--------TPGSSVYNY 439
Query: 511 VDPPLRNTVGVPVGGWAV-IRFVADNPGVWLMHCHLDVHITWGLAMAF 557
V+P R+ V + GG V RFV DNPG W +HCH+D H+ GLA+ F
Sbjct: 440 VNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVF 487
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 34/259 (13%)
Query: 39 DFVIQATPVKRLCKTH-NTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQ 97
D I+ T + + K +T NG P P + V GD + V VTN TIHWHG+ Q
Sbjct: 6 DLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQ 65
Query: 98 MRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSS-----WLRATVYGALII 152
T +DG TQ I PG ++TY+F + GT+W+H H + +R ++G LI+
Sbjct: 66 RGTWQSDGVPHATQHAIEPGDTFTYKFKAE-PAGTMWYHCHVNVNEHVTMRG-MWGPLIV 123
Query: 153 HPKEGSSYPFPKPK---RETPILLGEW---WDANPIDVVRQATRTGAAPNISDAYTINGQ 206
PK P P K ++ ++L +W W P G ++ D YTIN +
Sbjct: 124 EPKN----PLPIEKTVTKDYILMLSDWVSSWANKP-------GEGGIPGDVFDYYTINAK 172
Query: 207 PGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL-KPFT 265
S +T + + G+ LR+I +G + T H + D L KP
Sbjct: 173 -------SFPETQPIRVKKGDVIRLRLIGAGDHVHAIHT-HGHISQIAFKDGFPLDKPIK 224
Query: 266 TSVIMLGPGQTTDVLIKGD 284
+++GPG+ DV++ D
Sbjct: 225 GDTVLIGPGERYDVILNMD 243
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 437 FDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGF 496
FDY ++S P T+ +++ G +++ L H IH HG+ I F
Sbjct: 164 FDYYTINAKSF----PETQPIRVKKGDVIRLRLIGAGDHV---HAIHTHGH---ISQIAF 213
Query: 497 GNFNPKTDTSKFNLVDPPLR-NTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWG 552
+ P +D P++ +TV + G + DNPG+W++H H+D H T G
Sbjct: 214 KDGFP---------LDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNG 261
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 123/285 (43%), Gaps = 28/285 (9%)
Query: 57 ITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQCPIR 115
+ VN GPT+ N GD + V V N + N T +HWHG+RQ+ + DG VT+CPI
Sbjct: 99 MLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPIP 158
Query: 116 P-GMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIHPKEGSSYPFPKPKRETPILL 173
P G TY+F Q GT W+H+H S+ V G + I +S P+ P++
Sbjct: 159 PKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGP--ASLPYDIDLGVFPLM- 214
Query: 174 GEWWDANPIDVVRQATRTGAAPNISDAYTINGQ-------PGDLYNCSSQDTVVVPIDSG 226
+++ + ++V GA P SD NG G YN V + G
Sbjct: 215 -DYYYRSADELVHFTQSNGAPP--SDNVLFNGTARHPETGAGQWYN--------VTLTPG 263
Query: 227 ETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQX 286
+ + LR+IN+ + ++ H TV+ D + FT S + L GQ DV I +
Sbjct: 264 KRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSP 323
Query: 287 XXXXXXXXXXXXXXXXXXFDNTTTTAILEYKSAPC--PAKKGLSI 329
+N AI Y+ AP P +GL +
Sbjct: 324 VGNYWFNVTFGDGLCGSS-NNKFPAAIFRYQGAPATLPTDQGLPV 367
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 480 HPIHIHGYDFYIIAEGFGN---------FNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIR 530
HP+H+HG+DF ++ F+P D + +P R+ +P GGW ++
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 531 FVADNPGVWLMHCHLDVHITWGLAMAFL 558
F DNPG WL HCH+ H++ GL++ FL
Sbjct: 532 FKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 123/294 (41%), Gaps = 24/294 (8%)
Query: 57 ITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQCPIR 115
+ +NG GP + N GDT+ V V N N T IHWHG+ Q T DG VT+CPI
Sbjct: 58 MLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIP 117
Query: 116 P-GMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIHPKEGSSYPFPKPKRETPILL 173
P G TYR+ + Q GT W+H+H S+ V G + I+ +S P+ PI
Sbjct: 118 PKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGP--ASLPYDIDLGVFPIT- 173
Query: 174 GEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRV 233
+++ D+V AP SD ING + N V + G+ + LR+
Sbjct: 174 -DYYYRAADDLVHFTQNN--APPFSDNVLINGTAVNP-NTGEGQYANVTLTPGKRHRLRI 229
Query: 234 INSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQXXXXXXXX 293
+N+ ++ NH TV+ AD + T + L GQ DV+I +
Sbjct: 230 LNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFN 289
Query: 294 XXXXXXXXXXXFDNTTTTAILEYKSAP--CPAKKG-----------LSIRPVMP 334
N AI Y AP P +G L +RPV+P
Sbjct: 290 VTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVP 343
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 9/88 (10%)
Query: 480 HPIHIHGYDFYII---------AEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIR 530
HP+H+HG+DF ++ ++ F+P D ++ N +PP R+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 531 FVADNPGVWLMHCHLDVHITWGLAMAFL 558
F DNPG WL HCH+ H++ GL++ FL
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 123/294 (41%), Gaps = 24/294 (8%)
Query: 57 ITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQCPIR 115
+ +NG GP + N GDT+ V V N N T IHWHG+ Q T DG VT+CPI
Sbjct: 58 MLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIP 117
Query: 116 P-GMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIHPKEGSSYPFPKPKRETPILL 173
P G TYR+ + Q GT W+H+H S+ V G + I+ +S P+ PI
Sbjct: 118 PKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGP--ASLPYDIDLGVFPIT- 173
Query: 174 GEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRV 233
+++ D+V AP SD ING + N V + G+ + LR+
Sbjct: 174 -DYYYRAADDLVHFTQNN--APPFSDNVLINGTAVNP-NTGEGQYANVTLTPGKRHRLRI 229
Query: 234 INSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQXXXXXXXX 293
+N+ ++ NH TV+ AD + T + L GQ DV+I +
Sbjct: 230 LNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFN 289
Query: 294 XXXXXXXXXXXFDNTTTTAILEYKSAP--CPAKKG-----------LSIRPVMP 334
N AI Y AP P +G L +RPV+P
Sbjct: 290 VTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVP 343
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 9/88 (10%)
Query: 480 HPIHIHGYDFYII---------AEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIR 530
HP+H+HG+DF ++ ++ F+P D ++ N +PP R+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 531 FVADNPGVWLMHCHLDVHITWGLAMAFL 558
F DNPG WL HCH+ H++ GL++ FL
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 123/294 (41%), Gaps = 24/294 (8%)
Query: 57 ITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVT-IHWHGVRQMRTAWADGPEFVTQCPIR 115
+ +NG GP + N GDT+ V V N N T IHWHG+ Q T DG VT+CPI
Sbjct: 58 MLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIP 117
Query: 116 P-GMSYTYRFTIQGQEGTLWWHAH-SSWLRATVYGALIIHPKEGSSYPFPKPKRETPILL 173
P G TYR+ + Q GT W+H+H S+ V G + I+ +S P+ PI
Sbjct: 118 PKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGP--ASLPYDIDLGVFPIT- 173
Query: 174 GEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRV 233
+++ D+V AP SD ING + N V + G+ + LR+
Sbjct: 174 -DYYYRAADDLVHFTQNN--APPFSDNVLINGTAVNP-NTGEGQYANVTLTPGKRHRLRI 229
Query: 234 INSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQXXXXXXXX 293
+N+ ++ NH TV+ AD + T + L GQ DV+I +
Sbjct: 230 LNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFN 289
Query: 294 XXXXXXXXXXXFDNTTTTAILEYKSAP--CPAKKG-----------LSIRPVMP 334
N AI Y AP P +G L +RPV+P
Sbjct: 290 VTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVP 343
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 9/88 (10%)
Query: 480 HPIHIHGYDFYII---------AEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIR 530
HP+H+HG+DF ++ ++ F+P D ++ N +PP R+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 531 FVADNPGVWLMHCHLDVHITWGLAMAFL 558
F DNPG WL HCH+ H++ GL++ FL
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 32/248 (12%)
Query: 45 TPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWAD 104
TP+ + +T G +PGPTL V DT+ + + N+ +HWHG+ + D
Sbjct: 26 TPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPI--SPKVD 83
Query: 105 GPEFVTQCPIRPGMSYTYRFTIQGQ-EGTLWWHAH-----SSWLRATVYGALIIHPKEGS 158
P F+ I PG S+TY FT+ + GT W+H H + L A + GAL++ E S
Sbjct: 84 DP-FLE---IPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVV---ESS 136
Query: 159 SYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYT-INGQPGD--LYNCSS 215
P+ + LL V++ G P +NG+ GD L N +
Sbjct: 137 LDAIPELREAEEHLL----------VLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGAL 186
Query: 216 QDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL-KPFTTSVIMLGPG 274
+ T+V T LR++N+ + + +H ++ AD +L +P S ++L PG
Sbjct: 187 RPTLVA---QKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPG 243
Query: 275 QTTDVLIK 282
+ +VL++
Sbjct: 244 ERAEVLVR 251
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 49 RLCKTHNTI--TVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGP 106
L K T+ T NG+ P P +EV GD L + V NK + TIHWHGV DG
Sbjct: 63 ELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV--PPDQDGS 120
Query: 107 EFVTQCPIRPGMSYTYRFTI-QGQEGTLWWHAH-----SSWLRATVYGALIIHPKEGSSY 160
PI G YRF I Q GT W+H H S + + GA +I K+ +
Sbjct: 121 ---PHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALS 177
Query: 161 PFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVV 220
+E +++ + + PN + +NG+ G+ + Q
Sbjct: 178 HL----KEKDLMISDL----------RLDENAQIPNNNLNDWLNGREGEFVLINGQFKPK 223
Query: 221 VPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL-KPFTTSVIMLGPGQTTDV 279
+ + + E +R+ N+ + L I +F +VG D + K + L P +V
Sbjct: 224 IKLATNER--IRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEV 281
Query: 280 LI 281
LI
Sbjct: 282 LI 283
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 479 NHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGV 538
+HP HIHG F +I+ N K ++F LR+T+ V +R D G+
Sbjct: 406 DHPFHIHGTQFELIS---SKLNGKVQKAEFR----ALRDTINVRPNEELRLRMKQDFKGL 458
Query: 539 WLMHCHLDVHITWGL 553
+ HCH+ H G+
Sbjct: 459 RMYHCHILEHEDLGM 473
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 58 TVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG 117
+ NG PGPTL GD L + TN + TIH+HGV + A DG + I PG
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHR---ATMDGTPGIGAGSIAPG 114
Query: 118 MSYTYRFTIQGQEGTLWWHAHSSWLRATV----YGALIIHPKEG 157
S+TY F GT +H H S L + YG I+ PKEG
Sbjct: 115 QSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEG 157
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 85/229 (37%), Gaps = 30/229 (13%)
Query: 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADG--PEFVTQCPIRPGMSYTYR 123
PT+ + G + + + NK +HWHG W + P F I PG SY Y
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG---FDVNWHNDAHPSFA----ITPGESYNYS 90
Query: 124 FTIQGQEGTLWWHAHSSWLRATVYG----ALIIHPKEGSSYPFPKPKRETPILLGEWWDA 179
F + + GT +H H L A + L+I GS F + P+++ +
Sbjct: 91 FDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISDRRFI 150
Query: 180 NPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLN 239
V A + +A +NG ++ SG + LR++N
Sbjct: 151 GGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKL-----------SGGSYRLRLVNGSNA 199
Query: 240 QPLFFTIANHQFTVV-----GADASYL-KPFTTSVIMLGPGQTTDVLIK 282
+ +I VV D +L +P + L P + +V+++
Sbjct: 200 RLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVE 248
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 55 NTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPI 114
+ + +GM PGPT +V G VV+ N A ++H HG R A+ E +T+
Sbjct: 58 DLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFS-RAAFDGWAEDITE--- 113
Query: 115 RPGMSYTYRFTIQGQEGTLWWHAHSSWLRA 144
PG Y + + TLW+H H+ + A
Sbjct: 114 -PGSFKDYYYPNRQSARTLWYHDHAMHITA 142
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKT----DTSKFNLVDPPLRNTVGVPVGGWAVIRFVADN 535
HPIHIH DF +I+ GN N +T ++ ++V R TV V A
Sbjct: 398 HPIHIHLVDFKVISRTSGN-NARTVMPYESGLKDVVWLGRRETV-------VVEAHYAPF 449
Query: 536 PGVWLMHCHLDVHITWGLAMAF 557
PGV++ HCH +H + AF
Sbjct: 450 PGVYMFHCHNLIHEDHDMMAAF 471
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 367 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 411
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLV 559
D P ++ HCHL H G+ + F V
Sbjct: 412 HDAPKEHAYMAHCHLLEHEDTGMMLGFTV 440
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSS----W-LRATVYGALIIHPKEGSSYPFP 163
+ PG T RF + GT +HA W + + + G L++ P++G P
Sbjct: 106 TN---VNPGEQATLRFKAD-RSGTFVYHAAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 164 KP 165
KP
Sbjct: 162 KP 163
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 415 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 459
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLV 559
D P ++ HCHL H G+ + F V
Sbjct: 460 HDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 415 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 459
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLVENG 562
D P ++ HCHL H G+ + F V G
Sbjct: 460 HDAPKEHAYMAHCHLLEHDDTGMMLGFTVLQG 491
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 415 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 459
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLVENG 562
D P ++ HCHL H G+ + F V G
Sbjct: 460 HDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 24/97 (24%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 415 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 459
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLVENGVTELE 567
D P ++ HCHL H G+ + F V G L+
Sbjct: 460 HDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQGDHGLQ 496
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 415 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 459
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLV 559
D P ++ HCHL H G+ + F V
Sbjct: 460 HDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFT---------IQGQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF + EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYVCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 22/111 (19%)
Query: 64 PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG--MSYT 121
PGP +EVN GDTL ++ TN ++H HG+ + +DG + + + PG +YT
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTYT 93
Query: 122 YRFTIQGQ--EGTL------WWHAH---------SSWLRATVYGALIIHPK 155
+R G+ +GT +WH H + +R +YG +I+ K
Sbjct: 94 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 144
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 457 YKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLR 516
++ G RV+IV+ + H H+HG+ + T D P R
Sbjct: 173 FEATVGDRVEIVMITHGEYY---HTFHMHGHRW-----------ADNRTGILTGPDDPSR 218
Query: 517 ---NTVGVPVG--GWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561
N + P G+ +I G W+ HCH+ H G+ FLV+
Sbjct: 219 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 268
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 55 NTITVNGMYP--GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC 112
N +T+N P GP E GD + + + Y T H HG R WAD +
Sbjct: 158 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTG 212
Query: 113 PIRP 116
P P
Sbjct: 213 PDDP 216
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQ 111
KT T NG GP +++ G + V + N+ T+HWHG+ ++ GP+ +
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 112 CPIRPGMSYTYRFTIQGQEGTLWWHAHS 139
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPHQ 116
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 480 HPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVG----VPVGG---WAVIRFV 532
HP HIHG F I++E N K PP + G V V G +++F
Sbjct: 415 HPFHIHGTQFRILSE-----NGK----------PPAAHRAGWKDTVKVEGNVSEVLVKFN 459
Query: 533 ADNPG--VWLMHCHLDVHITWGLAMAFLVENG 562
D P ++ H HL H G+ + F V G
Sbjct: 460 HDAPKEHAYMAHSHLLEHEDTGMMLGFTVLQG 491
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 22/111 (19%)
Query: 64 PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG--MSYT 121
PGP +EVN GDTL ++ TN ++H HG+ + +DG + + + PG +YT
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 90
Query: 122 YRFTIQGQ--EGTL------WWHAH---------SSWLRATVYGALIIHPK 155
+R G+ +GT +WH H + +R +YG +I+ K
Sbjct: 91 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 141
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 457 YKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLR 516
++ G RV+IV+ + H H+HG+ + T D P R
Sbjct: 170 FEATVGDRVEIVMITHGEYY---HTFHMHGHRW-----------ADNRTGILTGPDDPSR 215
Query: 517 ---NTVGVPVG--GWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561
N + P G+ +I G W+ HCH+ H G+ FLV+
Sbjct: 216 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 265
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 55 NTITVNGMYP--GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC 112
N +T+N P GP E GD + + + Y T H HG R WAD +
Sbjct: 155 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTG 209
Query: 113 PIRP 116
P P
Sbjct: 210 PDDP 213
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 22/111 (19%)
Query: 64 PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG--MSYT 121
PGP +EVN GDTL ++ TN ++H HG+ + +DG + + + PG +YT
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 131
Query: 122 YRFTIQGQ--EGTL------WWHAH---------SSWLRATVYGALIIHPK 155
+R G+ +GT +WH H + +R +YG +I+ K
Sbjct: 132 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 182
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 457 YKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLR 516
++ G RV+IV+ + H H+HG+ + T D P R
Sbjct: 211 FEATVGDRVEIVMITHGEYY---HTFHMHGHRW-----------ADNRTGILTGPDDPSR 256
Query: 517 ---NTVGVPVG--GWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561
N + P G+ +I G W+ HCH+ H G+ FLV+
Sbjct: 257 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 306
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 55 NTITVNGMYP--GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC 112
N +T+N P GP E GD + + + Y T H HG R WAD +
Sbjct: 196 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTG 250
Query: 113 PIRP 116
P P
Sbjct: 251 PDDP 254
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 51 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 104
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 105 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----LSGTLMVLPRDGLK 156
Query: 160 YPFPKP 165
P KP
Sbjct: 157 DPQGKP 162
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----LSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPEGKP 163
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----LSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPEGKP 163
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 53 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 106
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 107 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 158
Query: 160 YPFPKP 165
P KP
Sbjct: 159 DPQGKP 164
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 58 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 111
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 112 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 163
Query: 160 YPFPKP 165
P KP
Sbjct: 164 DPQGKP 169
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----ASGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-----RATVYGALIIHPKEGSSYPFP 163
+ PG T RF + GT +H + + + G L++ P++G P
Sbjct: 106 TN---VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPHHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 164 KP 165
KP
Sbjct: 162 KP 163
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 22/111 (19%)
Query: 64 PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG--MSYT 121
PGP +EVN GDTL ++ TN ++H HG+ + +DG + + + PG +YT
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEIS--SDGTA-MNKSDVEPGGTRTYT 94
Query: 122 YRFTIQGQ--EGTL------WWHAH---------SSWLRATVYGALIIHPK 155
+R G+ +GT +WH H + +R +YG +I+ K
Sbjct: 95 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 145
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 457 YKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLR 516
++ G RV+IV+ + H H+HG+ + T D P R
Sbjct: 174 FEATVGDRVEIVMITHGEYY---HTFHMHGHRW-----------ADNRTGILTGPDDPSR 219
Query: 517 ---NTVGVPVG--GWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561
N + P G+ +I G W+ HCH+ H G+ FLV+
Sbjct: 220 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 269
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 55 NTITVNGMYP--GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC 112
N +T+N P GP E GD + + + Y T H HG R WAD +
Sbjct: 159 NDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTG 213
Query: 113 PIRP 116
P P
Sbjct: 214 PDDP 217
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 53 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 106
Query: 109 VTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPKEGSSYPFPKP 165
+ PG T RF + GT +H + G L++ P++G P KP
Sbjct: 107 TN---VNPGEQATLRFKAD-RSGTFVYHCTPHPFMS---GTLMVLPRDGLKDPQGKP 156
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 64 PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG--MSYT 121
PGP +E+N GDTL ++ N V++H HG+ + +DG + ++ + PG +YT
Sbjct: 40 PGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDGTK-QSRSDVEPGGTRTYT 96
Query: 122 YRFTIQGQ--EGTL------WWHAH---------SSWLRATVYGALIIHPK 155
+R + G+ +GT +WH H + +R +YG +I+ K
Sbjct: 97 WRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 147
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 525 GWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561
G+ VI G W+ HCH+ H G+ FLV+
Sbjct: 235 GFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 271
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGQ-----SGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPEGKP 163
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGQ-----SGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPEGKP 163
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSS----W-LRATVYGALIIHPKEGSSYPFP 163
+ PG T RF + GT +H S W + + + G L++ P++G P
Sbjct: 106 TN---VNPGEQATLRFKAD-RSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDPAG 161
Query: 164 KP 165
P
Sbjct: 162 AP 163
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWA----DGPE 107
KT I GP L GDTL++ N+A I+ HG+ +R ++ G +
Sbjct: 437 KTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVK 496
Query: 108 FVTQCPIRPGMSYTYRFTIQGQEG 131
+ PI PG + Y++T+ ++G
Sbjct: 497 HLKDFPILPGEIFKYKWTVTVEDG 520
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIR--------P 116
GPT++ DT+V+ + N A + V++H GV + ++G E+ Q R P
Sbjct: 73 GPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKA--SEGAEYDDQTSQREKEDDKVFP 130
Query: 117 GMSYTYRFTIQGQEG---------TLWWHAHSSW---LRATVYGALIIHPKEGSSYPFPK 164
G S+TY + + + G T + +H L + + GAL++ +EGS K
Sbjct: 131 GGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV-CREGS---LAK 186
Query: 165 PKRETP---ILL------GEWWDANPIDVVRQATRTGAAPNISDAYTING 205
K +T ILL G+ W + + + Q +A +T+NG
Sbjct: 187 EKTQTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNG 236
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWA----DGPE 107
KT I GP L GDTL++ N+A I+ HG+ +R ++ G +
Sbjct: 438 KTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVK 497
Query: 108 FVTQCPIRPGMSYTYRFTIQGQEG 131
+ PI PG + Y++T+ ++G
Sbjct: 498 HLKDFPILPGEIFKYKWTVTVEDG 521
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIR--------P 116
GPT++ DT+V+ + N A + V++H GV + ++G E+ Q R P
Sbjct: 74 GPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKA--SEGAEYDDQTSQREKEDDKVFP 131
Query: 117 GMSYTYRFTIQGQEG---------TLWWHAHSSW---LRATVYGALIIHPKEGSSYPFPK 164
G S+TY + + + G T + +H L + + GAL++ +EGS K
Sbjct: 132 GGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV-CREGS---LAK 187
Query: 165 PKRETP---ILL------GEWWDANPIDVVRQATRTGAAPNISDAYTING 205
K +T ILL G+ W + + + Q +A +T+NG
Sbjct: 188 EKTQTLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNG 237
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 95/259 (36%), Gaps = 47/259 (18%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN------------------KARYNVTIHWHG------V 95
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHGGVTPDDS 111
Query: 96 RQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RATVY- 147
AW GP F + Y + Q + LW+H H+ L R VY
Sbjct: 112 DGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRLNVYA 162
Query: 148 ---GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTIN 204
GA IIH + P + + P+L+ + + + +P++ + +
Sbjct: 163 GLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVP 222
Query: 205 GQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADASYL-K 262
G+ + + + ++ + RVIN+ + ++ N F +G+D L +
Sbjct: 223 AFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPR 281
Query: 263 PFTTSVIMLGPGQTTDVLI 281
+ L P + D++I
Sbjct: 282 SVKLNSFSLAPAERYDIII 300
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN ++V H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN ++V H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN ++V H T G +
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHG------ATGALGGAKL 105
Query: 109 VTQCPIRPGMSYTYRFTIQ---------GQEGTLWWHAHSSWLRATVYGALIIHPKEGSS 159
+ PG T RF EG + WH S + G L++ P++G
Sbjct: 106 TN---VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG-----MSGTLMVLPRDGLK 157
Query: 160 YPFPKP 165
P KP
Sbjct: 158 DPQGKP 163
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSEGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 457 YKLEYGSRVQ-IVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFN---LVD 512
++ G RV+ I + S F H H+HG+ + G TS+++ L+D
Sbjct: 192 FEANLGERVEWIAIGHGSNF----HTFHLHGHRWLDNRTGM-------RTSEYDPSPLID 240
Query: 513 PPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561
N GV G + VI PG+W+ HCH+ H G+A FLV N
Sbjct: 241 IKDLNP-GVSFG-FQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRN 287
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 64 PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMS--YT 121
PGP LE+ GDTL + + N +++H HGV +DG + + PG + YT
Sbjct: 56 PGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDY--DVNSDGT-LMNGSAVMPGQTRRYT 112
Query: 122 YRFTIQGQ-------EGTL-WWHAHSSWLRAT---------VYGALIIHPKEGSSYP 161
+R + + EGT +WH H + +YGAL++ ++G P
Sbjct: 113 WRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVR-RQGDLLP 168
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSNGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 51/263 (19%)
Query: 60 NGMYPGPTLEVNNGDTLVVKVTN----------------------KARYNVTIHWHG--- 94
NG++PGPT+EV + + VK N + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 95 ---VRQMRTAW------ADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWL-RA 144
AW GP F + Y + Q + LW+H H+ L R
Sbjct: 112 PDDSAGYPEAWFSKDFEQTGPYFKREV---------YHYPNQQRGAILWYHDHAMALTRL 162
Query: 145 TVY----GALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDA 200
VY GA IIH + P + + P+L+ + + + +P++ +
Sbjct: 163 NVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNP 222
Query: 201 YTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIAN-HQFTVVGADAS 259
+ G+ + + + ++ + RVIN+ + ++ N F +G+D
Sbjct: 223 SIVPAFCGETILVNGKVWPYLEVEPRKYR-FRVINASNTRTYNLSLDNGGDFIQIGSDGG 281
Query: 260 YL-KPFTTSVIMLGPGQTTDVLI 281
L + + L P + D++I
Sbjct: 282 LLPRSVKLNSFSLAPAERYDIII 304
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC--------PIRP 116
GPTL GD + V NKA ++IH G++ + +++G + + P
Sbjct: 59 GPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSK--FSEGASYSDHTLPMEKMDDAVAP 116
Query: 117 GMSYTYRFTIQGQEG 131
G YTY + I G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 53 THNTITVNGMYPGPTLEVNNGD----TLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF 108
T +T NG PGPTL V+ GD TLV TN +NV H
Sbjct: 48 TAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGALGGA-------- 99
Query: 109 VTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSS----W-LRATVYGALIIHPKEG 157
+ PG RF + GT +H + W + + + GAL++ P++G
Sbjct: 100 -GLTQVVPGQEAVLRFKAD-RSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDG 151
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 524 GGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLV 559
G + + PG+WL+HCH+ HI G+ + V
Sbjct: 1002 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTV 1037
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRF 124
GP L + GD + + N A +IH HGV+ E T P PG + TY +
Sbjct: 790 GPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ---------TESSTVTPTLPGETLTYVW 840
Query: 125 TIQGQEG 131
I + G
Sbjct: 841 KIPERSG 847
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 524 GGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLV 559
G + + PG+WL+HCH+ HI G+ + V
Sbjct: 1021 GTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTV 1056
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRF 124
GP L + GD + + N A +IH HGV+ E T P PG + TY +
Sbjct: 809 GPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ---------TESSTVTPTLPGETLTYVW 859
Query: 125 TIQGQEG 131
I + G
Sbjct: 860 KIPERSG 866
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 23/230 (10%)
Query: 59 VNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGM 118
+NG Y GPT+ V GD + + +N+ NV++ G+ Q+ GP + + P
Sbjct: 43 INGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM----MSPNA 97
Query: 119 SYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGAL----IIHPKEGSSYPFPKPKRETPILL 173
+ I+ TLW+HA++ A VY L ++ + S P P
Sbjct: 98 DWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGV----- 152
Query: 174 GEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRV 233
D P+ + + P ++ + G GD + + V + G LR+
Sbjct: 153 ----DDFPVIIQDKRLDNFGTPEYNEPGS-GGFVGDTLLVNGVQSPYVEVSRGWVR-LRL 206
Query: 234 INSGLNQPLFFTIANHQ-FTVVGADASYL-KPFTTSVIMLGPGQTTDVLI 281
+N+ ++ + + + V+ D +L P + + L PG+ ++L+
Sbjct: 207 LNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILV 256
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 22/128 (17%)
Query: 58 TVNGMYPGPTLEVNNGDTLVVKVTNKAR----YNVTIHWHGVRQMRTAWADGPEFVTQCP 113
T +G PG + V GDT+ V+ +N +NV H + A F
Sbjct: 62 TFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAAT----FTA--- 114
Query: 114 IRPGMSYTYRFTIQGQEGTLWWHAHSS----WLRATVYGALIIHPKEGSSYPFPKPKRET 169
PG + T+ F Q G +H + + +YG +++ PKEG PK +E
Sbjct: 115 --PGRTSTFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEF 167
Query: 170 PILLGEWW 177
I+ G+++
Sbjct: 168 YIVQGDFY 175
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 83/235 (35%), Gaps = 41/235 (17%)
Query: 64 PGPTLEVNNGDTLVVKVTN----KARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMS 119
PG + V GD + ++N K +N+ +H T G E PG +
Sbjct: 58 PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH------AVTGPGGGAE---SSFTAPGHT 108
Query: 120 YTYRFTIQGQEGTLWWHAHSS----WLRATVYGALIIHPKEGSSYPFPKPKRETPILLGE 175
T+ F G +H ++ + +YG +++ PKEG RE ++ G+
Sbjct: 109 STFNFKAL-NPGLYIYHCATAPVGMHIANGMYGLILVEPKEG----LAPVDREYYLVQGD 163
Query: 176 WWDA--------NPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGE 227
++ P D+ + A +D NG G S+ D + GE
Sbjct: 164 FYTKGEFGEAGLQPFDMAK------AIDEDADYVVFNGSVG-----STTDENSLTAKVGE 212
Query: 228 TNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIK 282
T L + N G N F + F V + LK ++ G V K
Sbjct: 213 TVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFK 267
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 58 TVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG 117
T NG PGP L V GDT+ + + N + ++ H V G TQ
Sbjct: 187 TFNGKVPGPFLRVRVGDTVELHLKN---HKDSLMVHSVDFHGATGPGGAAAFTQTDPGEE 243
Query: 118 MSYTYRFTIQGQEGTLWWHAHS----SWLRATVYGALIIHPKEGSSYPFPKPKRETPILL 173
T++ I G +H + + + +YG L++ P+ G P+ RE ++
Sbjct: 244 TVVTFKALIP---GIYVYHCATPSVPTHITNGMYGLLLVEPEGG----LPQVDREFYVMQ 296
Query: 174 GEWW 177
GE +
Sbjct: 297 GEIY 300
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGV-----RQMRTAWADGPE-FVTQCPIRPGM 118
GP + D + V+ N A ++H HG+ + +T D PE F I+P
Sbjct: 68 GPVIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPNK 127
Query: 119 SYTY 122
+YTY
Sbjct: 128 TYTY 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,721,567
Number of Sequences: 62578
Number of extensions: 815969
Number of successful extensions: 2167
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1859
Number of HSP's gapped (non-prelim): 265
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)