Query 008066
Match_columns 579
No_of_seqs 197 out of 1814
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 19:01:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 5E-105 1E-109 865.8 62.4 534 33-579 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 7E-103 1E-107 840.8 59.1 528 18-579 10-554 (596)
3 PLN02991 oxidoreductase 100.0 7E-102 2E-106 828.7 58.8 509 13-579 10-530 (543)
4 PLN02354 copper ion binding / 100.0 1E-101 2E-106 832.9 59.5 520 14-579 6-538 (552)
5 PLN02835 oxidoreductase 100.0 6E-101 1E-105 826.2 60.2 510 14-579 9-531 (539)
6 PLN02792 oxidoreductase 100.0 6E-101 1E-105 822.9 58.0 504 31-579 12-523 (536)
7 KOG1263 Multicopper oxidases [ 100.0 1.4E-99 3E-104 805.6 59.8 526 30-579 23-555 (563)
8 PLN02168 copper ion binding / 100.0 5.5E-99 1E-103 808.1 58.9 494 33-579 24-541 (545)
9 PLN02604 oxidoreductase 100.0 1.3E-95 3E-100 793.6 60.8 526 18-579 7-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 8.9E-96 2E-100 792.7 59.0 527 12-579 5-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 2.2E-94 4.8E-99 781.8 58.0 510 35-579 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.8E-91 3.8E-96 756.8 53.9 484 36-561 9-533 (538)
13 TIGR01480 copper_res_A copper- 100.0 3.4E-77 7.5E-82 644.0 51.5 424 35-560 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 2.9E-73 6.2E-78 609.6 47.1 430 35-559 45-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 8.1E-71 1.8E-75 586.0 45.1 403 37-561 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.1E-58 4.6E-63 493.5 42.8 409 37-561 34-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.3E-46 2.8E-51 380.1 24.8 266 31-321 23-300 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.7E-34 3.6E-39 249.3 11.9 116 41-156 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 4.8E-29 1E-33 224.2 12.3 107 451-561 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 3.7E-26 8E-31 209.9 13.9 150 167-319 1-159 (159)
21 TIGR01480 copper_res_A copper- 99.7 6E-16 1.3E-20 168.4 21.5 230 56-299 248-575 (587)
22 TIGR03095 rusti_cyanin rusticy 99.7 5.7E-17 1.2E-21 145.3 11.1 102 50-153 37-148 (148)
23 TIGR02376 Cu_nitrite_red nitri 99.7 1.6E-15 3.5E-20 153.8 22.7 247 198-561 47-297 (311)
24 PRK10965 multicopper oxidase; 99.6 2.8E-13 6E-18 146.5 22.6 236 52-301 210-513 (523)
25 PRK10883 FtsI repressor; Provi 99.5 9.2E-13 2E-17 141.1 20.6 222 51-301 206-458 (471)
26 PLN02835 oxidoreductase 99.5 3.8E-12 8.2E-17 138.2 24.1 255 54-318 191-513 (539)
27 TIGR03389 laccase laccase, pla 99.5 1.5E-11 3.2E-16 134.7 26.3 243 55-299 167-508 (539)
28 TIGR03096 nitroso_cyanin nitro 99.4 2E-12 4.4E-17 111.8 11.9 105 31-149 20-130 (135)
29 COG2132 SufI Putative multicop 99.4 2.6E-11 5.6E-16 130.4 18.2 237 51-301 186-439 (451)
30 PLN02168 copper ion binding / 99.3 7.1E-10 1.5E-14 120.3 23.0 240 54-296 188-501 (545)
31 PLN02991 oxidoreductase 99.3 2E-09 4.3E-14 116.7 26.3 242 53-297 189-497 (543)
32 PLN02354 copper ion binding / 99.2 7.3E-10 1.6E-14 120.7 21.3 241 54-297 189-505 (552)
33 TIGR03390 ascorbOXfungal L-asc 99.2 5.9E-10 1.3E-14 121.7 20.1 241 55-299 172-520 (538)
34 TIGR03388 ascorbase L-ascorbat 99.2 6.3E-10 1.4E-14 121.8 20.1 231 67-299 204-512 (541)
35 PLN02792 oxidoreductase 99.2 5E-09 1.1E-13 113.7 26.1 242 53-297 178-490 (536)
36 PLN02604 oxidoreductase 99.2 6.2E-10 1.3E-14 122.3 17.7 228 66-299 224-535 (566)
37 PLN02191 L-ascorbate oxidase 99.1 1.3E-08 2.8E-13 111.8 20.8 238 58-299 218-535 (574)
38 PF07731 Cu-oxidase_2: Multico 99.0 2.4E-09 5.2E-14 95.9 10.8 81 217-299 32-123 (138)
39 PLN00044 multi-copper oxidase- 98.9 1E-07 2.2E-12 104.2 21.1 225 66-296 217-519 (596)
40 PF07732 Cu-oxidase_3: Multico 98.8 3.3E-08 7.2E-13 85.5 10.5 91 454-562 25-116 (117)
41 PRK02710 plastocyanin; Provisi 98.8 6.1E-08 1.3E-12 84.2 12.0 73 66-153 47-119 (119)
42 KOG1263 Multicopper oxidases [ 98.8 1.2E-06 2.5E-11 95.0 23.2 243 54-298 192-523 (563)
43 PF13473 Cupredoxin_1: Cupredo 98.5 2.3E-07 5E-12 78.7 7.4 70 66-152 35-104 (104)
44 TIGR02656 cyanin_plasto plasto 98.2 5.7E-06 1.2E-10 69.4 8.7 81 66-153 17-99 (99)
45 TIGR03095 rusti_cyanin rusticy 98.2 7.4E-06 1.6E-10 73.7 8.6 93 454-560 51-148 (148)
46 TIGR02657 amicyanin amicyanin. 98.2 9.4E-06 2E-10 65.7 8.3 73 66-153 11-83 (83)
47 PF00127 Copper-bind: Copper b 98.1 1.7E-05 3.7E-10 66.5 8.0 82 66-153 17-99 (99)
48 PF00394 Cu-oxidase: Multicopp 98.1 2.1E-05 4.5E-10 72.2 9.2 96 453-562 58-158 (159)
49 PRK02888 nitrous-oxide reducta 98.0 3.8E-05 8.1E-10 83.1 10.2 98 47-155 534-635 (635)
50 TIGR02656 cyanin_plasto plasto 97.6 0.00025 5.5E-09 59.4 7.6 83 455-560 17-99 (99)
51 PF06525 SoxE: Sulfocyanin (So 97.6 0.00066 1.4E-08 62.7 10.4 102 55-157 74-190 (196)
52 TIGR03094 sulfo_cyanin sulfocy 97.6 0.00076 1.6E-08 60.9 10.3 101 55-156 73-188 (195)
53 COG3794 PetE Plastocyanin [Ene 97.5 0.00043 9.4E-09 59.9 8.2 74 66-154 54-128 (128)
54 TIGR02375 pseudoazurin pseudoa 97.4 0.0012 2.7E-08 56.6 8.9 75 66-156 15-90 (116)
55 TIGR03096 nitroso_cyanin nitro 97.3 0.0014 3E-08 57.3 8.3 60 455-545 61-120 (135)
56 TIGR03102 halo_cynanin halocya 97.2 0.0022 4.7E-08 54.9 8.6 73 66-153 42-115 (115)
57 PF00127 Copper-bind: Copper b 97.2 0.0033 7.1E-08 52.6 9.3 83 455-560 17-99 (99)
58 PRK02888 nitrous-oxide reducta 96.6 0.0079 1.7E-07 65.6 9.3 78 456-561 556-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.5 0.012 2.6E-07 49.7 7.6 67 455-553 35-101 (104)
60 PRK02710 plastocyanin; Provisi 95.8 0.043 9.3E-07 47.5 7.9 73 455-560 47-119 (119)
61 COG4454 Uncharacterized copper 95.1 0.081 1.7E-06 47.0 7.0 94 456-560 64-157 (158)
62 PRK10378 inactive ferrous ion 95.0 0.21 4.6E-06 51.7 11.0 75 66-156 44-119 (375)
63 TIGR02375 pseudoazurin pseudoa 94.9 0.17 3.6E-06 43.5 8.5 37 523-563 54-90 (116)
64 TIGR02695 azurin azurin. Azuri 94.2 0.25 5.5E-06 42.4 7.8 86 66-151 16-124 (125)
65 COG4454 Uncharacterized copper 94.2 0.55 1.2E-05 41.8 10.0 87 63-154 60-158 (158)
66 PF00116 COX2: Cytochrome C ox 94.1 0.4 8.6E-06 41.6 9.0 73 65-152 45-119 (120)
67 PF00116 COX2: Cytochrome C ox 93.1 1.7 3.6E-05 37.7 11.2 62 219-299 46-107 (120)
68 PF06525 SoxE: Sulfocyanin (So 92.3 1.7 3.7E-05 40.6 10.6 101 453-563 84-189 (196)
69 TIGR02657 amicyanin amicyanin. 92.3 0.94 2E-05 36.3 8.1 73 455-560 11-83 (83)
70 TIGR03102 halo_cynanin halocya 91.0 1.3 2.7E-05 38.0 7.9 74 455-560 42-115 (115)
71 TIGR02866 CoxB cytochrome c ox 90.4 2 4.4E-05 40.9 9.6 76 66-156 117-194 (201)
72 TIGR03094 sulfo_cyanin sulfocy 88.2 4.5 9.8E-05 37.1 9.4 100 453-562 83-187 (195)
73 TIGR02695 azurin azurin. Azuri 86.7 5 0.00011 34.6 8.4 78 219-296 16-112 (125)
74 TIGR02866 CoxB cytochrome c ox 85.9 4.3 9.4E-05 38.6 8.7 75 454-562 116-193 (201)
75 COG3794 PetE Plastocyanin [Ene 85.5 4 8.7E-05 35.6 7.4 74 456-561 55-128 (128)
76 PF12690 BsuPI: Intracellular 84.6 9.9 0.00021 30.4 8.8 65 229-294 4-82 (82)
77 PF12690 BsuPI: Intracellular 84.3 2.8 6.1E-05 33.5 5.6 58 67-135 17-80 (82)
78 COG1470 Predicted membrane pro 81.3 80 0.0017 33.7 16.6 176 68-299 278-470 (513)
79 COG1622 CyoA Heme/copper-type 78.8 11 0.00024 37.0 8.5 77 66-157 137-215 (247)
80 COG4263 NosZ Nitrous oxide red 70.7 6.2 0.00013 41.3 4.6 77 66-153 558-636 (637)
81 COG1622 CyoA Heme/copper-type 70.5 21 0.00046 35.0 8.2 76 454-561 136-212 (247)
82 PF05506 DUF756: Domain of unk 66.9 40 0.00087 27.2 8.0 61 64-131 7-70 (89)
83 TIGR03079 CH4_NH3mon_ox_B meth 66.5 47 0.001 34.1 9.7 16 111-126 337-352 (399)
84 PF04744 Monooxygenase_B: Mono 61.6 37 0.0008 35.0 8.0 69 52-126 249-333 (381)
85 PF10633 NPCBM_assoc: NPCBM-as 60.4 13 0.00029 29.1 3.9 60 71-134 2-70 (78)
86 COG2967 ApaG Uncharacterized p 60.2 11 0.00023 32.1 3.3 46 78-124 34-85 (126)
87 PF04151 PPC: Bacterial pre-pe 49.7 61 0.0013 24.6 6.0 65 219-295 5-69 (70)
88 PF01835 A2M_N: MG2 domain; I 48.3 74 0.0016 25.9 6.7 71 222-296 10-85 (99)
89 PF07705 CARDB: CARDB; InterP 48.3 1.4E+02 0.0031 23.9 9.0 67 222-297 14-84 (101)
90 MTH00140 COX2 cytochrome c oxi 47.9 53 0.0012 31.8 6.6 62 219-299 140-201 (228)
91 MTH00047 COX2 cytochrome c oxi 47.1 1.3E+02 0.0028 28.4 8.8 61 220-299 117-177 (194)
92 MTH00047 COX2 cytochrome c oxi 45.5 1.6E+02 0.0035 27.8 9.1 76 454-561 115-191 (194)
93 KOG4063 Major epididymal secre 43.7 1.9E+02 0.004 26.0 8.4 60 67-126 49-122 (158)
94 PTZ00047 cytochrome c oxidase 43.6 1.1E+02 0.0023 28.0 7.2 61 220-299 74-134 (162)
95 TIGR01433 CyoA cytochrome o ub 43.3 59 0.0013 31.5 6.1 75 455-561 139-214 (226)
96 COG3354 FlaG Putative archaeal 42.8 1.6E+02 0.0035 26.1 7.9 64 227-295 70-141 (154)
97 TIGR01433 CyoA cytochrome o ub 42.1 60 0.0013 31.5 5.9 62 219-299 139-200 (226)
98 PRK13202 ureB urease subunit b 41.5 79 0.0017 26.3 5.5 64 67-132 12-88 (104)
99 PF11142 DUF2917: Protein of u 39.9 82 0.0018 23.7 5.1 32 221-258 2-33 (63)
100 PF05938 Self-incomp_S1: Plant 39.7 94 0.002 26.1 6.1 69 77-155 2-71 (110)
101 MTH00140 COX2 cytochrome c oxi 39.3 1.4E+02 0.0029 29.0 7.9 76 454-561 139-215 (228)
102 PF14344 DUF4397: Domain of un 38.9 2.4E+02 0.0052 23.8 11.0 36 249-284 45-82 (122)
103 PTZ00047 cytochrome c oxidase 38.7 1.4E+02 0.0029 27.3 7.1 76 454-561 72-148 (162)
104 PF10633 NPCBM_assoc: NPCBM-as 37.5 1.1E+02 0.0024 23.8 5.8 63 224-295 2-74 (78)
105 MTH00008 COX2 cytochrome c oxi 37.2 98 0.0021 30.0 6.5 60 220-298 141-200 (228)
106 PRK05461 apaG CO2+/MG2+ efflux 37.1 49 0.0011 28.9 4.0 14 111-124 73-86 (127)
107 COG1188 Ribosome-associated he 36.6 26 0.00056 29.0 2.0 30 57-86 36-65 (100)
108 TIGR01432 QOXA cytochrome aa3 35.7 80 0.0017 30.4 5.6 61 220-299 131-191 (217)
109 PF05753 TRAP_beta: Translocon 34.3 1.4E+02 0.0031 27.8 6.8 31 105-135 74-105 (181)
110 PF04379 DUF525: Protein of un 33.1 72 0.0016 26.0 4.1 49 228-279 15-67 (90)
111 PF10989 DUF2808: Protein of u 32.7 52 0.0011 29.4 3.6 26 521-546 99-128 (146)
112 PF05506 DUF756: Domain of unk 31.3 2.7E+02 0.0059 22.2 9.9 58 227-295 20-77 (89)
113 PRK05461 apaG CO2+/MG2+ efflux 31.2 1.2E+02 0.0025 26.5 5.3 50 228-280 32-85 (127)
114 TIGR00192 urease_beta urease, 30.8 1.5E+02 0.0033 24.6 5.5 64 67-132 12-87 (101)
115 TIGR01432 QOXA cytochrome aa3 30.5 1.5E+02 0.0033 28.4 6.6 75 455-561 130-205 (217)
116 cd00918 Der-p2_like Several gr 30.2 2.1E+02 0.0045 24.7 6.7 61 65-126 19-87 (120)
117 PRK13203 ureB urease subunit b 29.8 1.6E+02 0.0035 24.5 5.5 64 67-132 12-87 (102)
118 PF07691 PA14: PA14 domain; I 29.6 2.9E+02 0.0063 23.8 8.0 60 221-285 54-120 (145)
119 PRK10525 cytochrome o ubiquino 29.0 1E+02 0.0022 31.5 5.3 62 220-300 152-213 (315)
120 smart00758 PA14 domain in bact 28.6 3.8E+02 0.0082 23.0 8.7 63 221-288 52-115 (136)
121 PF14392 zf-CCHC_4: Zinc knuck 28.3 72 0.0016 22.5 3.0 42 510-551 3-45 (49)
122 PRK13159 cytochrome c-type bio 27.4 1.3E+02 0.0028 27.2 5.1 61 33-95 31-92 (155)
123 MTH00051 COX2 cytochrome c oxi 27.3 1.6E+02 0.0036 28.6 6.2 60 220-298 145-204 (234)
124 PF07172 GRP: Glycine rich pro 27.0 50 0.0011 27.2 2.2 14 14-27 11-24 (95)
125 PF12988 DUF3872: Domain of un 26.6 34 0.00073 30.0 1.2 32 32-82 25-56 (137)
126 PF14451 Ub-Mut7C: Mut7-C ubiq 26.3 60 0.0013 25.9 2.5 27 53-79 48-74 (81)
127 PF10989 DUF2808: Protein of u 25.8 83 0.0018 28.1 3.7 29 111-139 96-127 (146)
128 PF14524 Wzt_C: Wzt C-terminal 25.7 2.1E+02 0.0047 24.5 6.4 72 222-296 30-107 (142)
129 cd00407 Urease_beta Urease bet 25.5 2.6E+02 0.0057 23.2 6.0 64 67-132 12-87 (101)
130 PF11322 DUF3124: Protein of u 24.5 2.2E+02 0.0048 24.7 5.7 53 229-285 27-79 (125)
131 COG4263 NosZ Nitrous oxide red 24.2 1.9E+02 0.0042 30.8 6.2 38 518-555 593-634 (637)
132 PF06016 Reovirus_L2: Reovirus 23.9 9.1E+02 0.02 29.6 12.2 82 72-157 1037-1124(1289)
133 MTH00038 COX2 cytochrome c oxi 23.9 2.8E+02 0.0061 26.8 7.2 69 454-554 139-207 (229)
134 PF02102 Peptidase_M35: Deuter 23.2 27 0.00059 36.2 0.0 46 87-137 77-122 (359)
135 PHA00407 phage lambda Rz1-like 23.1 1.4E+02 0.003 23.3 3.7 27 4-30 28-54 (84)
136 PRK13205 ureB urease subunit b 22.6 2.3E+02 0.005 25.3 5.5 64 67-132 12-87 (162)
137 PF11614 FixG_C: IG-like fold 22.3 2.3E+02 0.0049 24.0 5.6 49 228-284 34-83 (118)
138 MTH00129 COX2 cytochrome c oxi 22.2 2E+02 0.0043 28.0 5.7 61 220-299 141-201 (230)
139 PRK13254 cytochrome c-type bio 21.9 3.6E+02 0.0078 24.2 6.8 59 35-96 33-92 (148)
140 MTH00098 COX2 cytochrome c oxi 21.6 2.4E+02 0.0053 27.3 6.2 60 220-298 141-200 (227)
141 PRK13204 ureB urease subunit b 21.5 2.5E+02 0.0053 25.2 5.5 64 67-132 35-110 (159)
142 MTH00008 COX2 cytochrome c oxi 21.4 3.7E+02 0.008 26.0 7.4 76 454-561 139-215 (228)
143 PRK15188 fimbrial chaperone pr 21.1 5E+02 0.011 25.1 8.2 17 66-82 80-96 (228)
144 PRK13198 ureB urease subunit b 21.1 2.9E+02 0.0062 24.8 5.8 64 67-132 40-115 (158)
145 PF07172 GRP: Glycine rich pro 21.1 60 0.0013 26.8 1.6 15 10-24 3-17 (95)
146 MTH00129 COX2 cytochrome c oxi 20.7 3.5E+02 0.0077 26.2 7.2 76 454-561 139-215 (230)
147 PRK14125 cell division suppres 20.5 1.2E+02 0.0025 25.5 3.2 12 70-81 80-91 (103)
148 MTH00117 COX2 cytochrome c oxi 20.3 3.3E+02 0.0071 26.4 6.8 57 220-295 141-197 (227)
149 MTH00154 COX2 cytochrome c oxi 20.3 3.5E+02 0.0075 26.2 7.0 61 220-299 141-201 (227)
150 PRK13201 ureB urease subunit b 20.2 6E+02 0.013 22.3 7.8 65 67-133 12-88 (136)
151 PF14481 Fimbrial_PilY2: Type 20.0 36 0.00079 28.2 0.1 30 65-94 64-96 (118)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=5e-105 Score=865.78 Aligned_cols=534 Identities=63% Similarity=1.163 Sum_probs=436.9
Q ss_pred CceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCccccc
Q 008066 33 AKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC 112 (579)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~ 112 (579)
+++|+|+|+|++..+++||+.+++|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++.+++|+||++++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEecCCCcceeeeecccccccceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhhhCC
Q 008066 113 PIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTG 192 (579)
Q Consensus 113 ~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 192 (579)
+|+||++|+|+|++++++||||||||...+++||+|+|||+++.+.+++++..|+|++|+++||++......+......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999988888999999999988767777777899999999999998877776666566
Q ss_pred CCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEEC
Q 008066 193 AAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLG 272 (579)
Q Consensus 193 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~ 272 (579)
..+..+++++|||+.+++++|+....+.+++++|++|||||||+|+...+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667799999999988889987777899999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCccchhhcccCc
Q 008066 273 PGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAFTKKL 352 (579)
Q Consensus 273 pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 352 (579)
+||||||+|++++.+|+|||++....++.. .+......|||+|++.... ..+..+..+.+++..........+
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~-~~~~~~~~ail~Y~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~l 313 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPG-AFDNTTTTAILQYKGTSNS------AKPILPTLPAYNDTAAATNFSNKL 313 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCcc-CCCCcceEEEEEECCCCCC------CCCCCCCCCCCCchhhhhHHHhhc
Confidence 999999999999888999999987654431 1234568999999975441 111112222222221111111123
Q ss_pred CCCC----CCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhhhcccCCCCcccCC
Q 008066 353 RSPQ----KVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTD 428 (579)
Q Consensus 353 ~~l~----p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~ 428 (579)
+.+. +..+|...++++++.+.+...... ...+...++..+.|.+|+++|..|.+ +++++.+.+..+.+.++
T Consensus 314 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~w~in~~s~~~p~~-p~l~~~~~~~~~~~~~~ 388 (539)
T TIGR03389 314 RSLNSAQYPANVPVTIDRRLFFTIGLGLDPCP----NNTCQGPNGTRFAASMNNISFVMPTT-ALLQAHYFGISGVFTTD 388 (539)
T ss_pred ccccccCCCCCCCCCCCeEEEEEeecccccCc----ccccccCCCcEEEEEECCcccCCCCc-chhhhhhcccCCccccC
Confidence 3222 223445667777766655432110 00112224557889999999998887 56666555555666667
Q ss_pred CCCCCCccccCCCCC-CcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCC
Q 008066 429 FPANPPFKFDYTGNV-SRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSK 507 (579)
Q Consensus 429 ~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~ 507 (579)
++..+|+.|++++.. +..+ ....+++++.++.|++|||+|+|.+.+....||||||||+||||++|.|.|+.......
T Consensus 389 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~ 467 (539)
T TIGR03389 389 FPANPPTKFNYTGTNLPNNL-FTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAK 467 (539)
T ss_pred CccCCCccccCCCCCccccc-ccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccc
Confidence 777788888766542 1111 12336788999999999999999653335589999999999999999999987655557
Q ss_pred CCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEecCccccccCCCCCCCCCCC
Q 008066 508 FNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 508 ~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 579 (579)
+|+.||++|||+.||++||++|||+|||||.|+|||||+||+..||+++|.+.++++..++++.||..+|+|
T Consensus 468 ~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 468 FNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 899999999999999999999999999999999999999999999999999988887788899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6.5e-103 Score=840.81 Aligned_cols=528 Identities=27% Similarity=0.440 Sum_probs=420.9
Q ss_pred HHHHHHHhhhcccccCceEEEEEEEEEEeeecCc--eeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCc
Q 008066 18 LVLLIASNALLSFANAKAHHHDFVIQATPVKRLC--KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGV 95 (579)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~ 95 (579)
|.+.++...+.+.|.+.+++|+|++++..+++|| ..+++++|||++|||+||+++||+|+|+|+|+++++++|||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl 89 (596)
T PLN00044 10 LAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGV 89 (596)
T ss_pred HHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCc
Confidence 3333333333344677889999999999999999 55689999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCC-CceeEEe
Q 008066 96 RQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPK-RETPILL 173 (579)
Q Consensus 96 ~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~ 173 (579)
+|..++|+||+++ +||||+||++|+|+|++.+++||||||+|...+++ ||+|+|||++++..+.|+...+ +|++|++
T Consensus 90 ~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l 168 (596)
T PLN00044 90 QQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFI 168 (596)
T ss_pred cCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEe
Confidence 9999999999988 99999999999999998779999999999999997 9999999999877666765544 7999999
Q ss_pred eeeccCChHHHHHHhhhCCCCCCCCceEEEcCCCCCCCCCC----CCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCC
Q 008066 174 GEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCS----SQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANH 249 (579)
Q Consensus 174 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~----~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh 249 (579)
+||++.+.... ......|..+..++.++|||+....++|+ ....+.++|++|++|||||||++....+.|+|+||
T Consensus 169 ~DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH 247 (596)
T PLN00044 169 ADWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGH 247 (596)
T ss_pred cccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCC
Confidence 99999886543 33444554455678999999965445664 23346899999999999999999999999999999
Q ss_pred eeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCc-ceEEEEEe-ccCCCCCCCCCcceEEEEEeccCCCCCCCCC
Q 008066 250 QFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPS-RYYLAARA-YASAPNAPFDNTTTTAILEYKSAPCPAKKGL 327 (579)
Q Consensus 250 ~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g-~~~l~~~~-~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~ 327 (579)
+|+|||+||.+++|+.+++|.|++||||||+|++++.++ +|||++.. +..+. .++.....|||+|.+.....
T Consensus 248 ~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~--~~~~~~~~AIl~Y~~~~~~~---- 321 (596)
T PLN00044 248 NLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA--VVDKLTGVAILHYSNSQGPA---- 321 (596)
T ss_pred EEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc--cccCcceeEEEEECCCCCCC----
Confidence 999999999999999999999999999999999998765 89999864 22331 23556788999998754311
Q ss_pred CCCCCCCCCCC-CCCccchhhcccCcCCCC--C--CCCCCCCceeEEEEeccCc-CCCCCCCCCCcccCCCCCeeeeeec
Q 008066 328 SIRPVMPPLPA-FNDTATVTAFTKKLRSPQ--K--VEVPTDIDESLFFTVGLGL-NNCPRNFRSSRCQGPNGTRFTASMN 401 (579)
Q Consensus 328 ~~~~~~p~~p~-~~~~~~~~~~~~~~~~l~--p--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~in 401 (579)
..+ +|..+. ++++.....+...++.+. + ...++..+....+.+.... ..+. ....| .| ++.|++|
T Consensus 322 -~~~-~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~---~g-~~~~s~N 392 (596)
T PLN00044 322 -SGP-LPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM---APELI---DG-KLRATLN 392 (596)
T ss_pred -CCC-CCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc---ccccc---CC-eEEEEEC
Confidence 111 344443 455543332323333221 1 2222223333233322111 0000 01112 12 6789999
Q ss_pred ceeeecCCchhhhhhcccCCCCcccCCCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCC
Q 008066 402 NVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHP 481 (579)
Q Consensus 402 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP 481 (579)
|.+|..|++ ++|.+++.+.++.|.++|+..+|.. ....++.++.+++|++|||+|+|.. ...||
T Consensus 393 nvsf~~p~~-p~L~a~~~~~~gv~~~~fp~~pp~~------------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP 456 (596)
T PLN00044 393 EISYIAPST-PLMLAQIFNVPGVFKLDFPNHPMNR------------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQS 456 (596)
T ss_pred cccCCCCCC-cchhhhhccCCCcccCCCCCCCCcc------------ccccCceEEEcCCCCEEEEEEeCCC---CCCCC
Confidence 999999988 6776666666788988898877731 0123678899999999999999953 56999
Q ss_pred eeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEec
Q 008066 482 IHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561 (579)
Q Consensus 482 ~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~ 561 (579)
||||||+|+||+.|.|+|++. +...+|+.||++||||.||++||++|||++||||+|+|||||+.|...||+++|.|.+
T Consensus 457 ~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~ 535 (596)
T PLN00044 457 YHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVN 535 (596)
T ss_pred eeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEec
Confidence 999999999999999999965 4568999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc-cccCCCCCCCCCCC
Q 008066 562 GVTE-LEKLEAPPPDYPVC 579 (579)
Q Consensus 562 ~~~~-~~~~~~~p~~~~~c 579 (579)
+++. .++++.||.+++.|
T Consensus 536 ~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 536 PEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCCCccccccCCCcccCcc
Confidence 9876 78999999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=7.1e-102 Score=828.74 Aligned_cols=509 Identities=27% Similarity=0.459 Sum_probs=405.7
Q ss_pred hHHHHHHHHHHHhhhcccccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEe
Q 008066 13 GFFLGLVLLIASNALLSFANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHW 92 (579)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~ 92 (579)
.++++|+.|++... +.+.+++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||
T Consensus 10 ~~~~~~~~~~~~~~----~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHW 85 (543)
T PLN02991 10 AMILGLLFLISFVA----AEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISW 85 (543)
T ss_pred HHHHHHHHHHhhhh----ccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEE
Confidence 45555544433333 24578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeE
Q 008066 93 HGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPI 171 (579)
Q Consensus 93 HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l 171 (579)
||++|.+++|+||+++ +||+|+||++|+|+|++.+++||||||+|.+.+++ ||+|+|||+++++.+.|+...++|++|
T Consensus 86 HGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i 164 (543)
T PLN02991 86 SGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTV 164 (543)
T ss_pred CCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEE
Confidence 9999999999999998 99999999999999998679999999999988886 999999999987666676667899999
Q ss_pred EeeeeccCChHHHHHHhhhCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCee
Q 008066 172 LLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQF 251 (579)
Q Consensus 172 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~ 251 (579)
+++||++.....+... ...+..+..++.+||||+..+ +.+++++|++|||||||+|....+.|+|+||+|
T Consensus 165 ~l~DW~~~~~~~~~~~-~~~~~~~~~~d~~liNG~~~~---------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 234 (543)
T PLN02991 165 LIGDWYKTNHKDLRAQ-LDNGGKLPLPDGILINGRGSG---------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTM 234 (543)
T ss_pred EecceecCCHHHHHHH-hhcCCCCCCCCEEEEccCCCC---------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEE
Confidence 9999999886554433 334444557899999999531 569999999999999999999999999999999
Q ss_pred EEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCC
Q 008066 252 TVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRP 331 (579)
Q Consensus 252 ~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~ 331 (579)
+|||+||.+++|..++++.|++||||||+|++++++|+|||++...... ......|||+|++.....+ .
T Consensus 235 tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~-----~~~~~~AIl~Y~g~~~~~~------~ 303 (543)
T PLN02991 235 KLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS-----KILITTGVLHYSNSAGPVS------G 303 (543)
T ss_pred EEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC-----CCcceEEEEEeCCCCCCCC------C
Confidence 9999999999999999999999999999999999899999998763322 2345789999998653111 0
Q ss_pred CCCCCCCCCCcc--chhhcccCcCCCCCCCCCCCC--------ceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeec
Q 008066 332 VMPPLPAFNDTA--TVTAFTKKLRSPQKVEVPTDI--------DESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMN 401 (579)
Q Consensus 332 ~~p~~p~~~~~~--~~~~~~~~~~~l~p~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 401 (579)
..|..+...... ...+....+.++.+...|... ++.+.+...++ .+ .+ .+.|.+|
T Consensus 304 ~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----------~~---~g-~~~~~iN 368 (543)
T PLN02991 304 PIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-----------NI---EG-KQRYAVN 368 (543)
T ss_pred CCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc-----------cc---Cc-eEEEEEC
Confidence 112211111000 011112223332222233221 11222221111 11 22 5679999
Q ss_pred ceeeecCCchhhhhhcccCCCCcccCC-CCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCC
Q 008066 402 NVSFVLPSNFSLLQAHHHGIPGVFTTD-FPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENH 480 (579)
Q Consensus 402 ~~~~~~p~~~~~l~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~H 480 (579)
|.+|..|++ ++|.+.+.+.++.|..+ ++..+|. + .....++++.++.|++|||+|+|.. ...|
T Consensus 369 ~~s~~~p~~-p~L~~~~~~~~g~~~~~~~~~~~~~-----~-------~~~~~~~v~~~~~~~~VeiViqn~~---~~~H 432 (543)
T PLN02991 369 SASFYPADT-PLKLADYFKIAGVYNPGSIPDQPTN-----G-------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQ 432 (543)
T ss_pred CCccCCCCC-ChhhhhhhcccCccccccccccCCC-----C-------ccccCCcEEEcCCCCEEEEEEeCCC---CCCC
Confidence 999998888 66666555556766554 4444331 0 0123467889999999999999954 4699
Q ss_pred CeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEe
Q 008066 481 PIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 481 P~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
|||||||+||||++|.|.|++. +...+|+.||++|||+.||++||++|||+|||||+|+|||||.+|+..||..++.|.
T Consensus 433 P~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~ 511 (543)
T PLN02991 433 TWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVY 511 (543)
T ss_pred CeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEec
Confidence 9999999999999999999976 556899999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCCCCC
Q 008066 561 NGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 561 ~~~~~~~~~~~~p~~~~~c 579 (579)
++++..+.++.||.+.++|
T Consensus 512 ~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 512 TTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred CCCCccccccCCCcccCcc
Confidence 9999999999999999999
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1e-101 Score=832.92 Aligned_cols=520 Identities=25% Similarity=0.446 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHhhhcccccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeC
Q 008066 14 FFLGLVLLIASNALLSFANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWH 93 (579)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~H 93 (579)
+++++++|++..+....+.+.+++|+|+|++...++||+.+++++|||++|||+||+++||+|+|+|+|+++++++||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWH 85 (552)
T PLN02354 6 LLAVLLCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWS 85 (552)
T ss_pred HHHHHHHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccc
Confidence 44444444444444445566789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEE
Q 008066 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPIL 172 (579)
Q Consensus 94 G~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 172 (579)
|++|.+++|+||+++ +||+|+||++|+|+|++.+++||||||+|...|++ ||+|+|||+++...+.+++..++|++|+
T Consensus 86 Gi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~ 164 (552)
T PLN02354 86 GIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVL 164 (552)
T ss_pred cccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEE
Confidence 999999999999999 99999999999999998678999999999999996 9999999999876666776678999999
Q ss_pred eeeeccCChHHHHHHhhhCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeE
Q 008066 173 LGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFT 252 (579)
Q Consensus 173 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~ 252 (579)
++|||+.....+.. ....|..+..++.+||||+....+. ...+.+++++|++|||||||+|....+.|+|+||+|+
T Consensus 165 l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~t 240 (552)
T PLN02354 165 IGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMK 240 (552)
T ss_pred eeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEE
Confidence 99999987655433 3444444446789999999753321 2347899999999999999999999999999999999
Q ss_pred EEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCC
Q 008066 253 VVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPV 332 (579)
Q Consensus 253 via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~ 332 (579)
|||+||.+++|..+++|.|++||||||+|++++++|+|+|+......+ ......|||+|+++.... .+.
T Consensus 241 VIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~------~~~ 309 (552)
T PLN02354 241 LVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK-----KVLTTTGIIRYEGGKGPA------SPE 309 (552)
T ss_pred EEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC-----CCccEEEEEEECCCCCCC------CCC
Confidence 999999999999999999999999999999998899999998742222 245679999998765411 111
Q ss_pred CCCCCC-CC-CccchhhcccCcCCCCCCCCCC--------CCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecc
Q 008066 333 MPPLPA-FN-DTATVTAFTKKLRSPQKVEVPT--------DIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNN 402 (579)
Q Consensus 333 ~p~~p~-~~-~~~~~~~~~~~~~~l~p~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~ 402 (579)
.|..+. +. ......+....+......+.+. ..++++.+..... .+ ++ ...|.+||
T Consensus 310 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~g-~~~~~iNn 374 (552)
T PLN02354 310 LPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-----------KV---DG-KLRYALNG 374 (552)
T ss_pred CCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc-----------cC---Cc-eEEEEECC
Confidence 222111 00 0000111111122111111111 1223333322111 01 22 56799999
Q ss_pred eeeecCCchhhhhhcccCC-CCcccCC-CCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCC
Q 008066 403 VSFVLPSNFSLLQAHHHGI-PGVFTTD-FPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENH 480 (579)
Q Consensus 403 ~~~~~p~~~~~l~~~~~~~-~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~H 480 (579)
.+|..|++ |+|.+.+.+. .+.++.+ ++..+|..++. ...+++++.++.|++|||+|+|.. ...|
T Consensus 375 ~s~~~p~~-P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~----------~~~~~~v~~~~~~~~VeiVi~n~~---~~~H 440 (552)
T PLN02354 375 VSHVDPET-PLKLAEYFGVADKVFKYDTIKDNPPAKITK----------IKIQPNVLNITFRTFVEIIFENHE---KSMQ 440 (552)
T ss_pred ccCCCCCC-ChHHhhhhcccCCccccCccccCCccccCc----------cccCCeeEEcCCCCEEEEEEeCCC---CCCC
Confidence 99998888 4444433222 2444433 34444432110 123567889999999999999953 5699
Q ss_pred CeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEe
Q 008066 481 PIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 481 P~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
|||||||+||||++|.|.|++.. ...+|+.||++|||+.||++||++|||+|||||+|+|||||.+|+..||.++|.|.
T Consensus 441 P~HLHGh~F~Vlg~G~G~~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~ 519 (552)
T PLN02354 441 SWHLDGYSFFAVAVEPGTWTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVL 519 (552)
T ss_pred CCcCCCccEEEEeecCCCCCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEe
Confidence 99999999999999999998753 56789999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCCCCC
Q 008066 561 NGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 561 ~~~~~~~~~~~~p~~~~~c 579 (579)
++++..++++.||.+.+.|
T Consensus 520 ~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 520 SPERSLRDEYNMPENALLC 538 (552)
T ss_pred CCccccCcCCCCCcccccc
Confidence 9888888888899999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=5.9e-101 Score=826.17 Aligned_cols=510 Identities=26% Similarity=0.471 Sum_probs=398.5
Q ss_pred HHHHHHHHHHHhhhcccccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeC
Q 008066 14 FFLGLVLLIASNALLSFANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWH 93 (579)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~H 93 (579)
++++.++.+.+.++. .+.+.+++|+|+|++..+++||+++++|+|||++|||+||+++||+|+|+|+|+|+++++||||
T Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWH 87 (539)
T PLN02835 9 LLLGVLAVLSSVSLV-NGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWN 87 (539)
T ss_pred HHHHHHHHHHHHhhh-hccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeC
Confidence 344444444444433 3346789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEE
Q 008066 94 GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPIL 172 (579)
Q Consensus 94 G~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 172 (579)
|+++.+++|+||+++ +||+|+||++|+|+|++++++||||||||...+++ ||+|+|||+++...+.+++..|+|++|+
T Consensus 88 Gl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~ 166 (539)
T PLN02835 88 GIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLL 166 (539)
T ss_pred CcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEE
Confidence 999999999999999 99999999999999998678999999999998887 9999999987655556666789999999
Q ss_pred eeeeccCChHHHHHHhhhCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeE
Q 008066 173 LGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFT 252 (579)
Q Consensus 173 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~ 252 (579)
++||++.....+... ...|.....++.+||||+.. +.+++++|++|||||||+|....+.|+|+||+|+
T Consensus 167 l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~ 235 (539)
T PLN02835 167 VGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMK 235 (539)
T ss_pred eeccccCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEE
Confidence 999999987664433 33444455789999999975 5699999999999999999999999999999999
Q ss_pred EEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCC
Q 008066 253 VVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPV 332 (579)
Q Consensus 253 via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~ 332 (579)
|||+||.+++|..++++.|++||||||+|++++.+|+|+|++.....+ ......|||+|++..... ...
T Consensus 236 VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~-----~~~~~~ail~Y~~~~~~~------~~~ 304 (539)
T PLN02835 236 LVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR-----QILTATAVLHYSNSRTPA------SGP 304 (539)
T ss_pred EEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC-----CCcceEEEEEECCCCCCC------CCC
Confidence 999999999999999999999999999999998889999998642222 234679999998754311 111
Q ss_pred CCCCCCCC---CccchhhcccCcCCCCCCCCCC--------CCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeec
Q 008066 333 MPPLPAFN---DTATVTAFTKKLRSPQKVEVPT--------DIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMN 401 (579)
Q Consensus 333 ~p~~p~~~---~~~~~~~~~~~~~~l~p~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 401 (579)
+|..+... +..........+.+......+. ..++++.+..... .+ +| ...|++|
T Consensus 305 ~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~g-~~~w~iN 369 (539)
T PLN02835 305 LPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-----------LI---NG-KQRYAVN 369 (539)
T ss_pred CCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc-----------cc---CC-eEEEEEC
Confidence 22222110 0000001111111111111111 1133333322111 01 22 4679999
Q ss_pred ceeeecCCchhhhhhcccCCCCcccCCC-CCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCC
Q 008066 402 NVSFVLPSNFSLLQAHHHGIPGVFTTDF-PANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENH 480 (579)
Q Consensus 402 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~H 480 (579)
+.+|..|.. ++|.+.+.+..+.+..+. ...++ +. ....+++++.++.|++|||+|+|.. ...|
T Consensus 370 ~~s~~~p~~-P~L~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~t~~~~~~~~~~Veivi~N~~---~~~H 433 (539)
T PLN02835 370 GVSYVNSDT-PLKLADYFGIPGVFSVNSIQSLPS------GG------PAFVATSVMQTSLHDFLEVVFQNNE---KTMQ 433 (539)
T ss_pred CcccCCCCC-ChhhhhhhcCCCccccCccccCCC------CC------ccccCCeEEEcCCCCEEEEEEECCC---CCCC
Confidence 999998887 555454443344444331 11111 00 1234578899999999999999954 5689
Q ss_pred CeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEe
Q 008066 481 PIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 481 P~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
|||||||+||||++|.|.|++.. ...+|+.||++||||.||++||++|||+|||||+|+|||||++|+..||+++|.|+
T Consensus 434 P~HLHGh~F~Vlg~G~g~~~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~ 512 (539)
T PLN02835 434 SWHLDGYDFWVVGYGSGQWTPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVW 512 (539)
T ss_pred CCCCCCccEEEEeccCCCCCccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEc
Confidence 99999999999999999998643 45678999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCCCCCC
Q 008066 561 NGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 561 ~~~~~~~~~~~~p~~~~~c 579 (579)
++.+....++.||.++++|
T Consensus 513 ~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 513 NQVHSLANEYDIPDNALLC 531 (539)
T ss_pred cCCCccccccCCCcccccc
Confidence 9999899999999999999
No 6
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.3e-101 Score=822.89 Aligned_cols=504 Identities=23% Similarity=0.384 Sum_probs=402.6
Q ss_pred ccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCccc
Q 008066 31 ANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVT 110 (579)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~ 110 (579)
+...+++|+|++++...++||+.+++++||||+|||+||+++||+|+|+|+|+|+++++|||||++|.+++|+||+++ +
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-t 90 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-T 90 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-C
Confidence 345668999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred ccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhh
Q 008066 111 QCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQAT 189 (579)
Q Consensus 111 ~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 189 (579)
||||+||++|+|+|++++++||||||+|...+++ ||+|+|||.+++..+.+++..++|++|+++||++.+...+. ...
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~-~~~ 169 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLK-KIL 169 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHH-HHh
Confidence 9999999999999998779999999999998886 99999999887655566777789999999999998865533 333
Q ss_pred hCCCC-CCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeE
Q 008066 190 RTGAA-PNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSV 268 (579)
Q Consensus 190 ~~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~ 268 (579)
..|.. +..++.+||||+... ..+.+++++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~ 242 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTS 242 (536)
T ss_pred hccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeE
Confidence 34433 337899999999642 1267999999999999999999999999999999999999999999999999
Q ss_pred EEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCccchhhc
Q 008066 269 IMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAF 348 (579)
Q Consensus 269 l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~ 348 (579)
|.|++||||||+|++++.+|+|+|++.....+ ......|||+|.++.... + ..|..|.+++......+
T Consensus 243 l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~------~-~~p~~p~~~~~~~~~~~ 310 (536)
T PLN02792 243 LDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA-----AKVLVSSTLHYSNSKGHK------I-IHARQPDPDDLEWSIKQ 310 (536)
T ss_pred EEEccCceEEEEEEcCCCCceEEEEEEeccCC-----CCCceEEEEEECCCCCCC------C-CCCCCCCcCCccccccc
Confidence 99999999999999998889999998864333 234678999998764411 1 11223333333322211
Q ss_pred ----ccCcCCCCCCCCCCCCceeEEEEeccCcC-CCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhhhcccCCCC
Q 008066 349 ----TKKLRSPQKVEVPTDIDESLFFTVGLGLN-NCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPG 423 (579)
Q Consensus 349 ----~~~~~~l~p~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~~~~ 423 (579)
...+....+..+|+..++...+..+.... .+. ...+ . ..+.|++||.+|..|++ ++|.+.+.+.+|
T Consensus 311 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~---~-~~~~~~iN~~s~~~p~~-p~L~a~~~~~~g 381 (536)
T PLN02792 311 AQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESS----AALV---K-RKQRYAINGVSFVPSDT-PLKLADHFKIKG 381 (536)
T ss_pred hhhhhhccCCCCCCCCCCcccccceeccceeEEeccc----cccc---C-ceeEEEECCcccCCCCC-chhhhhhhccCC
Confidence 11111111233333322221111111100 000 0011 1 25679999999999988 666665545556
Q ss_pred cccCC-CCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCC
Q 008066 424 VFTTD-FPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPK 502 (579)
Q Consensus 424 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~ 502 (579)
.+..+ |+..+|.+++. ..++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.
T Consensus 382 ~~~~~~~~~~p~~~~~~-----------~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~ 447 (536)
T PLN02792 382 VFKVGSIPDKPRRGGGM-----------RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA 447 (536)
T ss_pred CcCcccCccCCcccCCC-----------ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc
Confidence 66553 67666643221 23577899999999999999953 45899999999999999999999874
Q ss_pred CCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEecCccccccCCCCCCCCCCC
Q 008066 503 TDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 503 ~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 579 (579)
+...+|+.||++||||.||++||++|||+|||||+|+||||+.+|+..||+++|.|.++.+..++++.||.++++|
T Consensus 448 -~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 448 -SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred -cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-99 Score=805.58 Aligned_cols=526 Identities=50% Similarity=0.886 Sum_probs=464.4
Q ss_pred cccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcc
Q 008066 30 FANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFV 109 (579)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~ 109 (579)
.+.+.++.|++++++..+.++|.+++++++||++|||+|++++||+|.|+|.|+++++++|||||+++..+.|+|| +.+
T Consensus 23 ~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~~ 101 (563)
T KOG1263|consen 23 QAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VYI 101 (563)
T ss_pred hhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-Ccc
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccC-ChHHHHHH
Q 008066 110 TQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDA-NPIDVVRQ 187 (579)
Q Consensus 110 ~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~~~ 187 (579)
|||||+||++|+|+|++++|.||||||+|.+.+++ |++|+|||+++...++|++.+++|++|+++||+.+ ....+...
T Consensus 102 TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~ 181 (563)
T KOG1263|consen 102 TQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNF 181 (563)
T ss_pred ccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHh
Confidence 99999999999999999889999999999999998 99999999999988899999999999999999996 77777777
Q ss_pred hhhCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEe
Q 008066 188 ATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTS 267 (579)
Q Consensus 188 ~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d 267 (579)
....+..+..+|..+|||+.+..++| .+.+++++||+|||||+|+|....+.|+|+||+|+||++||.+++|..++
T Consensus 182 ~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~ 257 (563)
T KOG1263|consen 182 LDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTD 257 (563)
T ss_pred hccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeec
Confidence 77777767668999999999988998 68999999999999999999999999999999999999999999999999
Q ss_pred EEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCccchhh
Q 008066 268 VIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTA 347 (579)
Q Consensus 268 ~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~ 347 (579)
+|.|.||||++|+|++++.+++|+|.+..+.++....+ .....++++|.+.....+ ...+..+.++..++...+..
T Consensus 258 ~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s---~~~~~~~~~~~~~~~~~s~~ 333 (563)
T KOG1263|consen 258 SLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPAS---EKLPIYPFLPPGNDTAWSTY 333 (563)
T ss_pred eEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCc---ccCcccccCCcccCchhhhh
Confidence 99999999999999999999999999998777643333 678999999998443221 11123344555566666665
Q ss_pred cccCcCCCC----CCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhhhcccCCCC
Q 008066 348 FTKKLRSPQ----KVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPG 423 (579)
Q Consensus 348 ~~~~~~~l~----p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~~~~ 423 (579)
+...++.+. +..+|++.++...+.+..+...+.... ..+.+..+++|+.+|+.|++|.++.+++....+
T Consensus 334 ~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~ 406 (563)
T KOG1263|consen 334 QARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-------KNNGKLRASINNISFVTPKTPSLLAAYFKNIPG 406 (563)
T ss_pred hhhcccccccccCcccCCCccccccceeeeccEEeccCCC-------CCCcEEEEEEcceEEECCCCchhhhhhhccCCc
Confidence 655666553 567778888877777776665543210 245577899999999999997788888777778
Q ss_pred cccCCCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCC
Q 008066 424 VFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKT 503 (579)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~ 503 (579)
.+.++++..|+..|++++ .+.++++++++++++||++|+|.+......|||||||+.|+||+.|.|+|++.+
T Consensus 407 ~~~~d~p~~P~~~~~~~~--------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~ 478 (563)
T KOG1263|consen 407 YFTNDFPDKPPIKFDYTG--------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAK 478 (563)
T ss_pred cccCccCCCCccccCCcc--------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCc
Confidence 888899999988888776 135789999999999999999988777788999999999999999999999965
Q ss_pred CC-CCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEecCccccccCCCCCCCCCCC
Q 008066 504 DT-SKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 504 ~~-~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 579 (579)
+. ..+|+.+|+.||||.||||||++|||.|||||+|+||||+++|...||.++|+|.++.+.++++..||.+.++|
T Consensus 479 d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 479 DPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred ChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 65 78999999999999999999999999999999999999999999999999999999999999999999999999
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=5.5e-99 Score=808.11 Aligned_cols=494 Identities=26% Similarity=0.459 Sum_probs=385.9
Q ss_pred CceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCccccc
Q 008066 33 AKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQC 112 (579)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~ 112 (579)
+++++|+|+|++...++||+.+++++|||++|||+||+++||+|+|+|+|+|+++|+|||||+++.+++|+||+++ +||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQc 102 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TNC 102 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-CcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhhhC
Q 008066 113 PIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRT 191 (579)
Q Consensus 113 ~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~ 191 (579)
+|+||++|+|+|++++++||||||||...|++ ||+|+|||+++++.+.|++..++|++|+++||++.+...+.. ....
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~~ 181 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SLDN 181 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hhhc
Confidence 99999999999998668999999999998886 999999999987766677778899999999999987544332 2333
Q ss_pred CCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEE
Q 008066 192 GAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIML 271 (579)
Q Consensus 192 g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l 271 (579)
|.....++.+||||+.. ..+.+++++|++|||||||++....+.|+|+||+|+|||+||.+++|..+++|.|
T Consensus 182 g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i 253 (545)
T PLN02168 182 GHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDI 253 (545)
T ss_pred CCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEE
Confidence 43344678999999963 1257999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEEEEcCCCC-c---ceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCccchhh
Q 008066 272 GPGQTTDVLIKGDQPP-S---RYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTA 347 (579)
Q Consensus 272 ~pG~R~dv~v~~~~~~-g---~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~ 347 (579)
++||||||+|++++.+ | +|||++.....+ ......|||+|+++.... ....|..|.+.+......
T Consensus 254 ~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~-----~~~~~~ail~Y~~~~~~~------~~p~p~~p~~~~~~~~~~ 322 (545)
T PLN02168 254 HVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD-----AYLGGVALIRYPNSPLDP------VGPLPLAPALHDYFSSVE 322 (545)
T ss_pred cCCceEEEEEEcCCCCCCCcceEEEEEEecccC-----CCcceEEEEEECCCCCCC------CCCCCCCCcccccccccc
Confidence 9999999999998654 4 799998864332 235678999998754411 111233333333211111
Q ss_pred cccCcC-CCCC---CCCCCC--------CceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhh
Q 008066 348 FTKKLR-SPQK---VEVPTD--------IDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQ 415 (579)
Q Consensus 348 ~~~~~~-~l~p---~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~ 415 (579)
....++ .+.| ...+.. .++++.+.... ..+ ++ ...|++||.+|..|++|.+ .
T Consensus 323 ~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------~~~---~g-~~~~~iN~~s~~~p~~P~l-~ 386 (545)
T PLN02168 323 QALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV-----------MLS---SG-KLRYTINGVSFVYPGTPLK-L 386 (545)
T ss_pred hhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc-----------ccc---Cc-eEEEEECCCccCCCCCchh-h
Confidence 111111 1111 111111 11222111100 011 22 5679999999999988544 4
Q ss_pred hcccCCCCcccC-CCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEe
Q 008066 416 AHHHGIPGVFTT-DFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAE 494 (579)
Q Consensus 416 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~ 494 (579)
+.+...++.+.+ +++..+|- . ....+++++.++.|++|||+|+|.. ...||||||||+||||++
T Consensus 387 ~~~~~~~~~~~~~~~~~~p~~-----~-------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~ 451 (545)
T PLN02168 387 VDHFQLNDTIIPGMFPVYPSN-----K-------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGY 451 (545)
T ss_pred hhhcccccccccCCCccCCCc-----C-------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEEC
Confidence 433222222222 24444331 0 0112467889999999999999953 569999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEecCcc------cccc
Q 008066 495 GFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGVT------ELEK 568 (579)
Q Consensus 495 g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~~------~~~~ 568 (579)
|.|.|++.. ...+|+.||++|||+.||++||++|||+|||||+|+|||||++|...||.+++.|+++++ ..+.
T Consensus 452 g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~ 530 (545)
T PLN02168 452 GFGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRD 530 (545)
T ss_pred CCCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCcccccccc
Confidence 999998653 457899999999999999999999999999999999999998888888888888865544 3577
Q ss_pred CCCCCCCCCCC
Q 008066 569 LEAPPPDYPVC 579 (579)
Q Consensus 569 ~~~~p~~~~~c 579 (579)
++.||.++++|
T Consensus 531 ~~~~P~~~~~c 541 (545)
T PLN02168 531 ENPIPGNVIRC 541 (545)
T ss_pred ccCCChhhccc
Confidence 89999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.3e-95 Score=793.60 Aligned_cols=526 Identities=32% Similarity=0.551 Sum_probs=394.4
Q ss_pred HHHHHHHhhhcccccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCC-CCCceEEeCCcc
Q 008066 18 LVLLIASNALLSFANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKA-RYNVTIHWHGVR 96 (579)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~ 96 (579)
|++++.+..+...+.+++++|+|+|++...++||+.+++|+|||++|||+||+++||+|+|+|+|.+ .++++|||||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~ 86 (566)
T PLN02604 7 LFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIR 86 (566)
T ss_pred HHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCC
Confidence 3333333333445567899999999999999999999999999999999999999999999999998 589999999999
Q ss_pred ccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeee
Q 008066 97 QMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGE 175 (579)
Q Consensus 97 ~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d 175 (579)
+.+++|+||+++++||+|+||++++|+|++ +++||||||||...++. ||+|+|||+++.+++.++ ..++|.+|+++|
T Consensus 87 ~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~D 164 (566)
T PLN02604 87 QIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTD 164 (566)
T ss_pred CCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeec
Confidence 999999999999999999999999999997 89999999999988886 999999999887555555 358899999999
Q ss_pred eccCChHHHHHHhhhC-CCCCCCCceEEEcCCCCCCCCCCC-----------------CCeeeEEEecCCEEEEEEeecC
Q 008066 176 WWDANPIDVVRQATRT-GAAPNISDAYTINGQPGDLYNCSS-----------------QDTVVVPIDSGETNLLRVINSG 237 (579)
Q Consensus 176 ~~~~~~~~~~~~~~~~-g~~~~~~~~~liNG~~~~~~~~~~-----------------~~~~~~~v~~G~~~rlRliN~g 237 (579)
|++....+........ .....+++..+|||+.. +.|+. ...+.+++++|++|||||||+|
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~ 242 (566)
T PLN02604 165 WYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLT 242 (566)
T ss_pred cccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEecc
Confidence 9998876554433221 11123568999999963 44531 1335789999999999999999
Q ss_pred CCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCc-ceEEEEEeccCCCCCCCCCcceEEEEEe
Q 008066 238 LNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPS-RYYLAARAYASAPNAPFDNTTTTAILEY 316 (579)
Q Consensus 238 ~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g-~~~l~~~~~~~~~~~~~~~~~~~~il~y 316 (579)
+...+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++.+| +|||++.....+. +.....|||+|
T Consensus 243 ~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~----~~~~~~aIL~Y 318 (566)
T PLN02604 243 ALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN----TTPPGLAIFNY 318 (566)
T ss_pred ccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC----CCcceeEEEEE
Confidence 999999999999999999999999999999999999999999999998775 7999987643331 34567999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCccchhhcccCcCCCC--CCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCC
Q 008066 317 KSAPCPAKKGLSIRPVMPPLPAFNDTATVTAFTKKLRSPQ--KVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGT 394 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~--p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (579)
++.....+ .+...+..+.+++..........+..+. +...+...++++.+....+. .+.
T Consensus 319 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------------~~~ 379 (566)
T PLN02604 319 YPNHPRRS----PPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNE---------------VNG 379 (566)
T ss_pred CCCCCCCC----CCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccc---------------cCC
Confidence 96432110 0111111122222111111111111111 11223345666654332211 112
Q ss_pred eeeeeecceeeecCCchhhhhhcccCCCCcccCCCCCCCCcccc---CCCCCCcCccccCCCceeEEeecCcEEEEEEec
Q 008066 395 RFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFD---YTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQD 471 (579)
Q Consensus 395 ~~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n 471 (579)
.+.|++|+.+|..|..| +|...+....+.++.+. ++..+. ++............+..++.++.|++||++|+|
T Consensus 380 ~~~w~in~~~~~~p~~p-~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n 455 (566)
T PLN02604 380 YRRWSVNNVSFNLPHTP-YLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQN 455 (566)
T ss_pred eEEEEECcccCCCCCCc-hhHhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEEC
Confidence 46799999999988774 44443333334443221 111111 000000000112345678899999999999999
Q ss_pred CCCC---CCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhh
Q 008066 472 TSIF---TPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVH 548 (579)
Q Consensus 472 ~~~~---~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H 548 (579)
...+ ....||||||||+||||++|.|.|++.++...+|+.||++|||+.||++||++|||+|||||.|+|||||+||
T Consensus 456 ~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~H 535 (566)
T PLN02604 456 ANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESH 535 (566)
T ss_pred CccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhH
Confidence 6421 3568999999999999999999998776667899999999999999999999999999999999999999999
Q ss_pred HHccceEEEEEecCccccccCCCCCCCCCCC
Q 008066 549 ITWGLAMAFLVENGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 549 ~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 579 (579)
+..||+++|.+. .+.++.+|.++++|
T Consensus 536 l~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 536 FFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred hhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 999999999743 25777899999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=8.9e-96 Score=792.66 Aligned_cols=527 Identities=30% Similarity=0.562 Sum_probs=389.4
Q ss_pred hhHHHHHHHHHHHhhhcccccCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CCceE
Q 008066 12 FGFFLGLVLLIASNALLSFANAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTI 90 (579)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~si 90 (579)
.++++..++.+-..+ .+++++|+|++++..+++||+.+++++|||++|||+||+++||+|+|+|+|+|+ ++++|
T Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsi 79 (574)
T PLN02191 5 VWWIVTVVAVLTHTA-----SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVI 79 (574)
T ss_pred ehhHHHHHHHHHHhh-----ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccE
Confidence 455555555544444 357899999999999999999999999999999999999999999999999998 78999
Q ss_pred EeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCce
Q 008066 91 HWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRET 169 (579)
Q Consensus 91 H~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~ 169 (579)
||||+++.+++|+||+++++||+|+||++|+|+|++ .++||||||||...+++ ||+|+|||+++.+...++ ..|+|+
T Consensus 80 HwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~ 157 (574)
T PLN02191 80 HWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEF 157 (574)
T ss_pred ECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeE
Confidence 999999999999999999999999999999999998 79999999999998886 999999999765433333 358999
Q ss_pred eEEeeeeccCChHHHHHHhhhC-CCCCCCCceEEEcCCCCCCCCCCC--------------------CCeeeEEEecCCE
Q 008066 170 PILLGEWWDANPIDVVRQATRT-GAAPNISDAYTINGQPGDLYNCSS--------------------QDTVVVPIDSGET 228 (579)
Q Consensus 170 ~l~~~d~~~~~~~~~~~~~~~~-g~~~~~~~~~liNG~~~~~~~~~~--------------------~~~~~~~v~~G~~ 228 (579)
+|+++||++............. .....+++.+||||+.. +.|.. .....+++++|++
T Consensus 158 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~ 235 (574)
T PLN02191 158 NLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKT 235 (574)
T ss_pred EEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCE
Confidence 9999999998654332222111 11124568899999864 34431 1123699999999
Q ss_pred EEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCC-cceEEEEEeccCCCCCCCCC
Q 008066 229 NLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPP-SRYYLAARAYASAPNAPFDN 307 (579)
Q Consensus 229 ~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~-g~~~l~~~~~~~~~~~~~~~ 307 (579)
|||||||+|+...+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++.+ ++||||+.....+. ..
T Consensus 236 yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~----~~ 311 (574)
T PLN02191 236 YRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP----NT 311 (574)
T ss_pred EEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999876 58999987543331 22
Q ss_pred cceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCccchhhcccCcCC-CCCCCCCC-CCceeEEEEeccCcCCCCCCCCC
Q 008066 308 TTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAFTKKLRS-PQKVEVPT-DIDESLFFTVGLGLNNCPRNFRS 385 (579)
Q Consensus 308 ~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~-l~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 385 (579)
....|||+|.+...... +....+..|.+.+..........+.. ......|. ..+.++.+.... .
T Consensus 312 ~~~~ail~Y~~~~~~~~----p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~--------- 377 (574)
T PLN02191 312 TQALTILNYVTAPASKL----PSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN-L--------- 377 (574)
T ss_pred CCceEEEEECCCCCCCC----CCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc-e---------
Confidence 23569999987554210 11011122223322111111111111 00111222 234444332211 0
Q ss_pred CcccCCCCCeeeeeecceeeecCCchhhhhhcccCCCCcccCCCCCCC-CccccCCCCCCcCccccCCCceeEEeecCcE
Q 008066 386 SRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANP-PFKFDYTGNVSRSLWQPVPGTKLYKLEYGSR 464 (579)
Q Consensus 386 ~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 464 (579)
......|.+|+.+|..|..|.|+.. ..+.++.+..+.+... +..|+..+. ..+.....+++++.++.|++
T Consensus 378 ------~~~~~~~~~n~~s~~~p~~P~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 448 (574)
T PLN02191 378 ------IDGYTKWAINNVSLVTPATPYLGSV-KYNLKLGFNRKSPPRSYRMDYDIMNP--PPFPNTTTGNGIYVFPFNVT 448 (574)
T ss_pred ------eCCeEEEEECcccCcCCCcchHHHH-hhccCcccccCCCcccccccccccCC--CccccccccceeEEecCCCE
Confidence 1123569999999998888544443 3333344333332211 212222111 11112234667899999999
Q ss_pred EEEEEecCCCC---CCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEE
Q 008066 465 VQIVLQDTSIF---TPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLM 541 (579)
Q Consensus 465 ve~~l~n~~~~---~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~ 541 (579)
|||+|+|.... ....||||||||+||||++|.|.|++..+...+|+.||++|||+.+|++||++|||++||||+|+|
T Consensus 449 Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~ 528 (574)
T PLN02191 449 VDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFF 528 (574)
T ss_pred EEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEE
Confidence 99999996411 256899999999999999999999975555679999999999999999999999999999999999
Q ss_pred EecchhhHHccceEEEEEecCccccccCCCCCCCCCCC
Q 008066 542 HCHLDVHITWGLAMAFLVENGVTELEKLEAPPPDYPVC 579 (579)
Q Consensus 542 HCHi~~H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 579 (579)
||||+||+..||+++|. ++. ++++.+|.++++|
T Consensus 529 HCHi~~Hl~~Gm~~~~~--e~~---~~~~~~p~~~~~C 561 (574)
T PLN02191 529 HCHIEPHLHMGMGVVFA--EGL---NRIGKIPDEALGC 561 (574)
T ss_pred ecCchhhhhcCCEEEEe--cCh---hhccCCCcchhhh
Confidence 99999999999999996 333 4555678889999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.2e-94 Score=781.85 Aligned_cols=510 Identities=32% Similarity=0.589 Sum_probs=384.5
Q ss_pred eEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CCceEEeCCccccCCCCCCCCCcccccc
Q 008066 35 AHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGPEFVTQCP 113 (579)
Q Consensus 35 ~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DGv~~~~~~~ 113 (579)
+|+|+|++++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|++. ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 488999999999999999999999999999999999999999999999985 7899999999999999999999999999
Q ss_pred cCCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhhhCC
Q 008066 114 IRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTG 192 (579)
Q Consensus 114 i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 192 (579)
|+||++++|+|++ +++||||||||...+++ ||+|+|||+++.++..++ ..|+|++|+++||++....+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999997 79999999999988886 999999999986544444 35899999999999987655443322211
Q ss_pred -CCCCCCceEEEcCCCCCCCCCCCC-------------------CeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeE
Q 008066 193 -AAPNISDAYTINGQPGDLYNCSSQ-------------------DTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFT 252 (579)
Q Consensus 193 -~~~~~~~~~liNG~~~~~~~~~~~-------------------~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~ 252 (579)
.....++.++|||+.. +.|... ....++|++|++|||||||+++...+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568899999953 334211 224589999999999999999999999999999999
Q ss_pred EEeeCCcccCceEEeEEEECcccEEEEEEEcCCCC-cceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCC
Q 008066 253 VVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPP-SRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRP 331 (579)
Q Consensus 253 via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~-g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~ 331 (579)
|||+||.+++|+.++.|.|++||||||+|++++.+ |+|||++.....+. ......|||+|.+...... ++.
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~----~~~~~~aiL~Y~~~~~~~~----p~~ 308 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP----NTPPGLTVLNYYPNSPSRL----PPT 308 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC----CCccEEEEEEECCCCCCCC----CCC
Confidence 99999999999999999999999999999999866 48999987643321 2345789999987543110 011
Q ss_pred CCCCCCCCCCccchhhcccCcCC-CCCCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCc
Q 008066 332 VMPPLPAFNDTATVTAFTKKLRS-PQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSN 410 (579)
Q Consensus 332 ~~p~~p~~~~~~~~~~~~~~~~~-l~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~ 410 (579)
..+..+.+.+..........+.. ......+...++++++...... ......|++|+.+|..|..
T Consensus 309 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~n~~s~~~p~~ 373 (541)
T TIGR03388 309 PPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNK---------------INGYTKWAINNVSLTLPHT 373 (541)
T ss_pred CCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcc---------------cCceEEEEECcccCCCCCc
Confidence 11222333332111111111111 1112233456666654432211 1124569999999988877
Q ss_pred hhhhhhcccCCCCcccCCCC-CCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCC---CCCCCCeeeec
Q 008066 411 FSLLQAHHHGIPGVFTTDFP-ANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIF---TPENHPIHIHG 486 (579)
Q Consensus 411 ~~~l~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~---~~~~HP~HlHG 486 (579)
|.|+.. ..+..+.+..+.+ ...+..|+..... .....+.++.++.++.|++||++|+|...+ ....|||||||
T Consensus 374 p~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHG 450 (541)
T TIGR03388 374 PYLGSL-KYNLLNAFDQKPPPENYPRDYDIFKPP--PNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHG 450 (541)
T ss_pred cHHHHH-hhcCCccccCCCCcccccccccccCCC--cccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecC
Confidence 444433 3222222221110 0111112111100 001123467889999999999999996422 24689999999
Q ss_pred cceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEecCcccc
Q 008066 487 YDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGVTEL 566 (579)
Q Consensus 487 ~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~~~~ 566 (579)
|+||||++|.|.|+...+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+ + .
T Consensus 451 h~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e--~---~ 525 (541)
T TIGR03388 451 HDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAE--G---V 525 (541)
T ss_pred CceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEec--c---c
Confidence 9999999999999876556689999999999999999999999999999999999999999999999999974 3 2
Q ss_pred ccCCCCCCCCCCC
Q 008066 567 EKLEAPPPDYPVC 579 (579)
Q Consensus 567 ~~~~~~p~~~~~c 579 (579)
++++.+|.++++|
T Consensus 526 ~~~~~~P~~~~~C 538 (541)
T TIGR03388 526 EKVGKLPKEALGC 538 (541)
T ss_pred cccCCCCccccCC
Confidence 5677899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.8e-91 Score=756.80 Aligned_cols=484 Identities=26% Similarity=0.481 Sum_probs=369.7
Q ss_pred EEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CCceEEeCCccccCCCCCCCCCccccccc
Q 008066 36 HHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGPEFVTQCPI 114 (579)
Q Consensus 36 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DGv~~~~~~~i 114 (579)
-.|+|++++..+++||+.+++++|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++..++|+||+|++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46999999999999999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEec-CCCcceeeeecccccccceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhhhCCC
Q 008066 115 RPGMSYTYRFTIQ-GQEGTLWWHAHSSWLRATVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGA 193 (579)
Q Consensus 115 ~PG~~~~y~f~~~-~~~Gt~~yH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 193 (579)
+||++|+|+|+++ +++||||||||...++.||+|+|||++++..++ ..|+|++|+++||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999973 589999999999988889999999998764433 348899999999999887765544332221
Q ss_pred -CCCCCceEEEcCCCCCCCCCC-------CCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCe-eEEEeeCCcccCce
Q 008066 194 -APNISDAYTINGQPGDLYNCS-------SQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQ-FTVVGADASYLKPF 264 (579)
Q Consensus 194 -~~~~~~~~liNG~~~~~~~~~-------~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~-~~via~DG~~~~p~ 264 (579)
....+++++|||+..+.. |. ....+.+++++|++|||||||+|+...+.|+|+||+ |+|||+||.+++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 123468999999965331 10 112478999999999999999999999999999999 99999999999999
Q ss_pred EEeEEEECcccEEEEEEEcCCC-------CcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCC
Q 008066 265 TTSVIMLGPGQTTDVLIKGDQP-------PSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLP 337 (579)
Q Consensus 265 ~~d~l~l~pG~R~dv~v~~~~~-------~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p 337 (579)
.+++|.|++||||||+|++++. +|+|||++.....+ +.....|||+|++..... .+..|..+
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~-----~~~~~~aiL~Y~~~~~~~------~~~~p~~~ 313 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP-----KVYRGYAVLRYRSDKASK------LPSVPETP 313 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC-----CcceEEEEEEeCCCCCCC------CCCCCCCC
Confidence 9999999999999999999975 48999998754322 234578999998654311 11111111
Q ss_pred CCCCc-cchhhcccCcCCCCCC-----CCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeec--CC
Q 008066 338 AFNDT-ATVTAFTKKLRSPQKV-----EVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVL--PS 409 (579)
Q Consensus 338 ~~~~~-~~~~~~~~~~~~l~p~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~ 409 (579)
..... .........+.++.+. ..+...++++.+...+.... ....+.|++|+.+|.. +.
T Consensus 314 ~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-------------~~g~~~~~~N~~s~~~~~~~ 380 (538)
T TIGR03390 314 PLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-------------LNGRVAWLQNGLSWTESVRQ 380 (538)
T ss_pred CCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc-------------cCCeEEEEECCcccCCCCCC
Confidence 11100 0001111223333221 22345677777766643210 1225779999999985 56
Q ss_pred chhhhhhcccCCCCcccCCCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCC-----CCCCCCeee
Q 008066 410 NFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIF-----TPENHPIHI 484 (579)
Q Consensus 410 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~-----~~~~HP~Hl 484 (579)
.|.|+..+..+. ...++ |+... . ......++.++.++.|++|||+|+|.... ....|||||
T Consensus 381 ~P~L~~~~~~~~--------~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~Hl 446 (538)
T TIGR03390 381 TPYLVDIYENGL--------PATPN--YTAAL--A--NYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHA 446 (538)
T ss_pred CchHHHHhcCCC--------CcCCC--ccccc--c--cCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeee
Confidence 644443322110 00011 11000 0 00112345678899999999999996311 257899999
Q ss_pred eccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeC----------CCcEEEEEEEecCceeEEEEecchhhHHccce
Q 008066 485 HGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVP----------VGGWAVIRFVADNPGVWLMHCHLDVHITWGLA 554 (579)
Q Consensus 485 HG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp----------~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~ 554 (579)
|||+||||++|.|.|++......+++.||++|||+.|| ++||++|||++||||+|+|||||+||+..||+
T Consensus 447 HGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~ 526 (538)
T TIGR03390 447 HGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQ 526 (538)
T ss_pred cCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccce
Confidence 99999999999999997654557889999999999996 78999999999999999999999999999999
Q ss_pred EEEEEec
Q 008066 555 MAFLVEN 561 (579)
Q Consensus 555 ~~~~V~~ 561 (579)
++|.|.+
T Consensus 527 ~~~~~~~ 533 (538)
T TIGR03390 527 TVWVFGD 533 (538)
T ss_pred EEEEeCC
Confidence 9999865
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.4e-77 Score=644.04 Aligned_cols=424 Identities=28% Similarity=0.445 Sum_probs=315.0
Q ss_pred eEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCccccccc
Q 008066 35 AHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPI 114 (579)
Q Consensus 35 ~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i 114 (579)
.++|+|++++..++++|+.+++|+|||++|||+||+++||+|+|+|+|+++++++|||||+++... +||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCccccccc
Confidence 379999999999999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred CCCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhh----
Q 008066 115 RPGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQAT---- 189 (579)
Q Consensus 115 ~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~---- 189 (579)
+||++|+|+|++ .++||||||||...+.. ||+|+|||++++..+. ..|+|++|+++||++.+..+++....
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 78999999999987775 9999999998755443 35899999999999877655543221
Q ss_pred -----------------hCCCC----------------C------CCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEE
Q 008066 190 -----------------RTGAA----------------P------NISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNL 230 (579)
Q Consensus 190 -----------------~~g~~----------------~------~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~r 230 (579)
..|.. . .....+||||+.. ...+.+.+++|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvR 271 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVR 271 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEE
Confidence 01100 0 0012378999853 223568999999999
Q ss_pred EEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcce
Q 008066 231 LRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTT 310 (579)
Q Consensus 231 lRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 310 (579)
|||||+|+.+.+.|+|+||+|+||++||.+++|..++.+.|++||||||+|+.+ ..|.|+|++..... ...+
T Consensus 272 LR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~-------~~~~ 343 (587)
T TIGR01480 272 LRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR-------TGYA 343 (587)
T ss_pred EEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC-------CceE
Confidence 999999999999999999999999999999999999999999999999999987 46899999875321 2357
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCCCCCCC-C-Cc--cc-h--hhc-----------------------------------
Q 008066 311 TAILEYKSAPCPAKKGLSIRPVMPPLPAF-N-DT--AT-V--TAF----------------------------------- 348 (579)
Q Consensus 311 ~~il~y~~~~~~~~~~~~~~~~~p~~p~~-~-~~--~~-~--~~~----------------------------------- 348 (579)
.++|++........+.+.+.+ +...... . .. .. . ...
T Consensus 344 ~~~l~~~~~~~~~~p~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
T TIGR01480 344 RGTLAVRLGLTAPVPALDPRP-LLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASE 422 (587)
T ss_pred EEEEecCCCCCCCCCCCCCcc-ccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccc
Confidence 788888754220100000000 0000000 0 00 00 0 000
Q ss_pred ---------------------------------ccCcCCCCCCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCe
Q 008066 349 ---------------------------------TKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTR 395 (579)
Q Consensus 349 ---------------------------------~~~~~~l~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (579)
..+|+.+.+...+...++.+.+.+. ....+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~-----------------g~m~~ 485 (587)
T TIGR01480 423 PLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLT-----------------GNMER 485 (587)
T ss_pred cCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEc-----------------CCCce
Confidence 0000000000000111111111111 11234
Q ss_pred eeeeecceeeecCCchhhhhhcccCCCCcccCCCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCC
Q 008066 396 FTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIF 475 (579)
Q Consensus 396 ~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~ 475 (579)
+.|++||+.|. ....+.++.|++|+|.|.|.+
T Consensus 486 ~~wtiNG~~~~----------------------------------------------~~~pl~v~~Gervri~l~N~t-- 517 (587)
T TIGR01480 486 FAWSFDGEAFG----------------------------------------------LKTPLRFNYGERLRVVLVNDT-- 517 (587)
T ss_pred eEEEECCccCC----------------------------------------------CCCceEecCCCEEEEEEECCC--
Confidence 55777765442 112457999999999999965
Q ss_pred CCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceE
Q 008066 476 TPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 555 (579)
Q Consensus 476 ~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~ 555 (579)
.+.||||||||.|+++..+ |. .+.++||+.|+|++++.++|.++|||.|+||||++.|++.|||.
T Consensus 518 -~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~ 582 (587)
T TIGR01480 518 -MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFR 582 (587)
T ss_pred -CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcE
Confidence 6799999999999998642 21 24578999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 008066 556 AFLVE 560 (579)
Q Consensus 556 ~~~V~ 560 (579)
.|.|.
T Consensus 583 ~~~v~ 587 (587)
T TIGR01480 583 EVTVR 587 (587)
T ss_pred EEEeC
Confidence 99873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.9e-73 Score=609.59 Aligned_cols=430 Identities=21% Similarity=0.277 Sum_probs=297.9
Q ss_pred eEEEEEEEEEEeeecCce-eeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccc
Q 008066 35 AHHHDFVIQATPVKRLCK-THNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCP 113 (579)
Q Consensus 35 ~~~~~l~~~~~~~~~~g~-~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~ 113 (579)
...|+|++++...++++. ..++|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 346999999999998764 457999999999999999999999999999999999999999999876 99986 899
Q ss_pred cCCCCeEEEEEEecCCCcceeeeecccccc-----cceeeeEEEeCCCCCCCCCCC--CCCceeEEeeeeccCChHHHHH
Q 008066 114 IRPGMSYTYRFTIQGQEGTLWWHAHSSWLR-----ATVYGALIIHPKEGSSYPFPK--PKRETPILLGEWWDANPIDVVR 186 (579)
Q Consensus 114 i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 186 (579)
|+||++++|+|++++++||||||+|.++.. .||+|+|||+++.+...+++. ..+|++|+++||+.+.......
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999866789999999985433 399999999998765444443 3468999999998865443221
Q ss_pred Hhh-hCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEE-cCCeeEEEeeCCccc-Cc
Q 008066 187 QAT-RTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTI-ANHQFTVVGADASYL-KP 263 (579)
Q Consensus 187 ~~~-~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l-~gh~~~via~DG~~~-~p 263 (579)
... ........++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ +||+|+|||.||.++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 111 0111224568999999987 456664 679999999999999999998 899999999999987 99
Q ss_pred eEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 008066 264 FTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTA 343 (579)
Q Consensus 264 ~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~ 343 (579)
..+++|.|+|||||||+|+++ +.++|.+....................++++....... ...+|.
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~P~-------- 333 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISA------SGTLPD-------- 333 (523)
T ss_pred cEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCC------CCcCCh--------
Confidence 999999999999999999998 46889888764322110000011234555555432210 001111
Q ss_pred chhhcccCcCCCCCCCCC-CCCceeEEEEeccCcC---------CCCCCCCCC--------cc-cC-----CC-----CC
Q 008066 344 TVTAFTKKLRSPQKVEVP-TDIDESLFFTVGLGLN---------NCPRNFRSS--------RC-QG-----PN-----GT 394 (579)
Q Consensus 344 ~~~~~~~~~~~l~p~~~p-~~~~~~~~~~~~~~~~---------~~~~~~~~~--------~~-~~-----~~-----~~ 394 (579)
.+..+.+...+ ....+++.+....... .+..+.... .. .+ .. +.
T Consensus 334 -------~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (523)
T PRK10965 334 -------SLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGP 406 (523)
T ss_pred -------hhccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 01111110000 1122333332211000 000000000 00 00 00 00
Q ss_pred --e--eeeeecceeeecCCchhhhhhcccCCCCcccCCCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEe
Q 008066 395 --R--FTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQ 470 (579)
Q Consensus 395 --~--~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~ 470 (579)
. ..|+|||++|.. ....+.++.|++++|+|.
T Consensus 407 ~~~~~~~~~ING~~~~~---------------------------------------------~~~~~~~~~G~~e~w~i~ 441 (523)
T PRK10965 407 AFDFHHANKINGKAFDM---------------------------------------------NKPMFAAKKGQYERWVIS 441 (523)
T ss_pred cccccccccCCCeECCC---------------------------------------------CCcceecCCCCEEEEEEE
Confidence 0 013455554431 112357899999999999
Q ss_pred cCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe----cCceeEEEEecch
Q 008066 471 DTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA----DNPGVWLMHCHLD 546 (579)
Q Consensus 471 n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a----dnpG~wl~HCHi~ 546 (579)
|.+ ..+.|||||||++|||+++... ......+.|||||.|++ +.+.|++++ +++|.|||||||+
T Consensus 442 N~~--~~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 442 GVG--DMMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred eCC--CCCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 965 2358999999999999998532 11223468999999988 555554443 5788999999999
Q ss_pred hhHHccceEEEEE
Q 008066 547 VHITWGLAMAFLV 559 (579)
Q Consensus 547 ~H~~~GM~~~~~V 559 (579)
+|||.|||+.|.|
T Consensus 510 ~Hed~GMM~~~~V 522 (523)
T PRK10965 510 EHEDTGMMLGFTV 522 (523)
T ss_pred hhhccCccceeEe
Confidence 9999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=8.1e-71 Score=585.97 Aligned_cols=403 Identities=18% Similarity=0.236 Sum_probs=292.3
Q ss_pred EEEEEEEEEeeecCc-eeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccC
Q 008066 37 HHDFVIQATPVKRLC-KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIR 115 (579)
Q Consensus 37 ~~~l~~~~~~~~~~g-~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~ 115 (579)
.++|+++...+++++ ..+++|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+. .+||++ ++|+
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 489999999999875 6789999999999999999999999999999999999999999998876 467763 6799
Q ss_pred CCCeEEEEEEecCCCcceeeeecccccc-----cceeeeEEEeCCCCCCCCCCC--CCCceeEEeeeeccCChHHHHHHh
Q 008066 116 PGMSYTYRFTIQGQEGTLWWHAHSSWLR-----ATVYGALIIHPKEGSSYPFPK--PKRETPILLGEWWDANPIDVVRQA 188 (579)
Q Consensus 116 PG~~~~y~f~~~~~~Gt~~yH~h~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 188 (579)
||++++|.|++++++||||||+|.++.+ +||+|+|||+++.+...+++. ..+|++|+++||..+.......
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-- 199 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-- 199 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc--
Confidence 9999999999866799999999987644 399999999998765444443 3458999999998765332111
Q ss_pred hhCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEE-cCCeeEEEeeCCccc-CceEE
Q 008066 189 TRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTI-ANHQFTVVGADASYL-KPFTT 266 (579)
Q Consensus 189 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l-~gh~~~via~DG~~~-~p~~~ 266 (579)
.........++.++|||+.+ +.+++++| +|||||||+|+.+.+.|+| +||+|+|||.||..+ +|..+
T Consensus 200 ~~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 200 NEPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred cccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 01111234678999999987 56899875 7999999999999999999 899999999998776 99999
Q ss_pred eEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCC---CCCCCc---ceEEEEEeccCCCCCCCCCCCCCCCCCCCCCC
Q 008066 267 SVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPN---APFDNT---TTTAILEYKSAPCPAKKGLSIRPVMPPLPAFN 340 (579)
Q Consensus 267 d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~---~~~~~~---~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~ 340 (579)
+++.|+|||||||+|++++ .+.+.+++........ ..+... ....+++........ ... ..+|
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~p--- 337 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP----LVT---DNLP--- 337 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccccc----CCC---CcCC---
Confidence 9999999999999999984 4566666532110000 000000 011223332211000 000 0000
Q ss_pred CccchhhcccCcCCCCCCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhhhcccC
Q 008066 341 DTATVTAFTKKLRSPQKVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHG 420 (579)
Q Consensus 341 ~~~~~~~~~~~~~~l~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~ 420 (579)
..+.. +...+...++++.+.+... .|.|||++|....
T Consensus 338 ---------~~l~~--~~~~~~~~~~~~~~~l~~~---------------------~~~INg~~~~~~~----------- 374 (471)
T PRK10883 338 ---------MRLLP--DEIMEGSPIRSREISLGDD---------------------LPGINGALWDMNR----------- 374 (471)
T ss_pred ---------hhhcC--CCCCCCCCcceEEEEecCC---------------------cCccCCcccCCCc-----------
Confidence 00110 0011112333433333211 2568888775321
Q ss_pred CCCcccCCCCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCC
Q 008066 421 IPGVFTTDFPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFN 500 (579)
Q Consensus 421 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~ 500 (579)
....++.|++++|+|.|. +.|||||||+.|||++++...
T Consensus 375 ----------------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~-- 413 (471)
T PRK10883 375 ----------------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAM-- 413 (471)
T ss_pred ----------------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCC--
Confidence 124689999999999883 489999999999999985321
Q ss_pred CCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCce----eEEEEecchhhHHccceEEEEEec
Q 008066 501 PKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADNPG----VWLMHCHLDVHITWGLAMAFLVEN 561 (579)
Q Consensus 501 ~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adnpG----~wl~HCHi~~H~~~GM~~~~~V~~ 561 (579)
....+..|||||.|+ +.+.|+++++++| .|||||||++|||.|||+.|+|.+
T Consensus 414 -------~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 414 -------PFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred -------CCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 111235799999996 4599999998887 899999999999999999999865
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-58 Score=493.52 Aligned_cols=409 Identities=25% Similarity=0.373 Sum_probs=292.8
Q ss_pred EEEEEEEEEeee-cCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccC
Q 008066 37 HHDFVIQATPVK-RLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIR 115 (579)
Q Consensus 37 ~~~l~~~~~~~~-~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~ 115 (579)
...+.......+ ..+.....|.+||++|||+||+++||+|+|+++|.+.+.++|||||+..++. +||++..+++++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCC
Confidence 333444443334 4567788999999999999999999999999999998889999999888754 9999999999999
Q ss_pred CCCeEEEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhhhCCCC
Q 008066 116 PGMSYTYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAA 194 (579)
Q Consensus 116 PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~ 194 (579)
||++++|.|+. +++||||||+|.++|.. ||+|++||++.++.+. ..|++..+++.+|+.......... .....
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~ 185 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMG 185 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--Ccccc
Confidence 99999999986 67779999999999886 9999999999976654 447788888888987654433332 12223
Q ss_pred CCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcc
Q 008066 195 PNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPG 274 (579)
Q Consensus 195 ~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG 274 (579)
...++..+|||+.++ +...++.+|||||+|+++...+.+++.+++|+||+.||.+++|..+|.+.|+||
T Consensus 186 ~~~g~~~~vnG~~~p-----------~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~ 254 (451)
T COG2132 186 GFPGDTLLVNGAILP-----------FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPG 254 (451)
T ss_pred CCCCCeEEECCCccc-----------eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCc
Confidence 346789999998763 445556679999999998888889999999999999999998899999999999
Q ss_pred cEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCC---CCCCCCccchhhcccC
Q 008066 275 QTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPP---LPAFNDTATVTAFTKK 351 (579)
Q Consensus 275 ~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~---~p~~~~~~~~~~~~~~ 351 (579)
|||||++++++ .+.+.+.+... .. .....+......... .+...... .+.. +. .. ..
T Consensus 255 er~~v~v~~~~-~~~~~l~~~~~-~~------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-d~--~~---~~ 314 (451)
T COG2132 255 ERYEVLVDMND-GGAVTLTALGE-DM------PDTLKGFRAPNPILT------PSYPVLNGRVGAPTG-DM--AD---HA 314 (451)
T ss_pred ceEEEEEEcCC-CCeEEEEeccc-cC------Cceeeeeeccccccc------cccccccccccCCCc-ch--hh---cc
Confidence 99999999994 78899988751 11 011112211111111 00000000 0000 00 00 00
Q ss_pred cCCCCCCCCCCC---CceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhhhcccCCCCcccCC
Q 008066 352 LRSPQKVEVPTD---IDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTD 428 (579)
Q Consensus 352 ~~~l~p~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~ 428 (579)
...+........ .+....+.. ....+.|.+|++.|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~n~~~~~~--------------------- 354 (451)
T COG2132 315 PVGLLVTILVEPGPNRDTDFHLIG-------------------GIGGYVWAINGKAFDD--------------------- 354 (451)
T ss_pred ccccchhhcCCCcccccccchhhc-------------------ccccccccccCccCCC---------------------
Confidence 000000000000 000000000 0011234444443321
Q ss_pred CCCCCCccccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCC
Q 008066 429 FPANPPFKFDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKF 508 (579)
Q Consensus 429 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~ 508 (579)
....+.++.|++++|+|.|.. .+.||||+||+.|+|++.+ ...
T Consensus 355 ------------------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~ 397 (451)
T COG2132 355 ------------------------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APA 397 (451)
T ss_pred ------------------------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCc
Confidence 124568899999999999965 4899999999999999985 122
Q ss_pred CCCCCCcceeEEeCCCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEec
Q 008066 509 NLVDPPLRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561 (579)
Q Consensus 509 ~~~~p~~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~ 561 (579)
....+.|||||.+.++..++++|.+++||.|+||||+++|++.|||..+.|..
T Consensus 398 ~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 398 PGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred ccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 33467999999999999999999999999999999999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.3e-46 Score=380.11 Aligned_cols=266 Identities=18% Similarity=0.221 Sum_probs=216.8
Q ss_pred ccCceEEEEEEEEEEeee-cCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC--CCceEEeCCccccCCCCCCCCC
Q 008066 31 ANAKAHHHDFVIQATPVK-RLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR--YNVTIHWHGVRQMRTAWADGPE 107 (579)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~-~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~--~~~siH~HG~~~~~~~~~DGv~ 107 (579)
+...+++|+|++++..++ .+|..+++|+|||++|||+||+++||+|+|+|+|.+. .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 456789999999999988 5799999999999999999999999999999999986 58999999963 378887
Q ss_pred cccccccCCCCeEEEEEEecCCCcceeeeecccc----ccc-ceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChH
Q 008066 108 FVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSW----LRA-TVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPI 182 (579)
Q Consensus 108 ~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~----~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~ 182 (579)
.+++ |+||++++|+|++ +++||||||||.++ +.. ||+|+|||++++.. +..|+|++|+++||+.....
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 7776 9999999999987 78999999999654 443 99999999987542 25589999999999986533
Q ss_pred HHHHHhhhC-C-CCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcc
Q 008066 183 DVVRQATRT-G-AAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASY 260 (579)
Q Consensus 183 ~~~~~~~~~-g-~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~ 260 (579)
......... + .....+++++|||+.+++. +.+.+++|+++||||+|++....+.||++||.+++|+.||.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~-------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~ 243 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGALT-------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKF 243 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCCC-------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcc
Confidence 211000000 0 0113458999999965321 346899999999999999998999999999999999999999
Q ss_pred cCc-e-EEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCC
Q 008066 261 LKP-F-TTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPC 321 (579)
Q Consensus 261 ~~p-~-~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~ 321 (579)
+.+ . .++++.|+||||+||+|+++ +||.|++++|.+... ...+..++++|++...
T Consensus 244 ~~~~~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~-----~~~g~~~~i~~~g~~~ 300 (311)
T TIGR02376 244 ANPPNRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEA-----FEKGAAAQVKVEGAWN 300 (311)
T ss_pred cCCCCCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHH-----HhCCCEEEEEECCCCC
Confidence 955 3 48999999999999999999 589999999976443 1345789999986543
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1.7e-34 Score=249.30 Aligned_cols=116 Identities=44% Similarity=0.792 Sum_probs=108.0
Q ss_pred EEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeE
Q 008066 41 VIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSY 120 (579)
Q Consensus 41 ~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~ 120 (579)
.|++..+.++|..+++|+|||++|||+||+++||+|+|+|+|.++++++|||||+++.+.+|+||+++++||+|+||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47888999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCcceeeeecccccc-cceeeeEEEeCCC
Q 008066 121 TYRFTIQGQEGTLWWHAHSSWLR-ATVYGALIIHPKE 156 (579)
Q Consensus 121 ~y~f~~~~~~Gt~~yH~h~~~~~-~Gl~G~liV~~~~ 156 (579)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999966699999999998865 4999999999874
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=4.8e-29 Score=224.24 Aligned_cols=107 Identities=44% Similarity=0.817 Sum_probs=95.2
Q ss_pred CCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEE
Q 008066 451 VPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIR 530 (579)
Q Consensus 451 ~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~ir 530 (579)
..+..++.++.|++|||+|+|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 35678999999999999999955 56999999999999999987665443 345678899999999999999999999
Q ss_pred EEecCceeEEEEecchhhHHccceEEEEEec
Q 008066 531 FVADNPGVWLMHCHLDVHITWGLAMAFLVEN 561 (579)
Q Consensus 531 f~adnpG~wl~HCHi~~H~~~GM~~~~~V~~ 561 (579)
|+++|||.|+|||||++|++.|||++|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=3.7e-26 Score=209.93 Aligned_cols=150 Identities=33% Similarity=0.620 Sum_probs=122.2
Q ss_pred CceeEEeeeeccCChHHHHHHhhhCCC----CCCCCceEEEcCCCCCCCCCC-----CCCeeeEEEecCCEEEEEEeecC
Q 008066 167 RETPILLGEWWDANPIDVVRQATRTGA----APNISDAYTINGQPGDLYNCS-----SQDTVVVPIDSGETNLLRVINSG 237 (579)
Q Consensus 167 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~-----~~~~~~~~v~~G~~~rlRliN~g 237 (579)
+|++|+++|||+.............+. .+..+++++|||+.. +.|+ ....+.+.+++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 489999999999888777765544432 256889999999975 4454 24568999999999999999999
Q ss_pred CCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEec
Q 008066 238 LNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYK 317 (579)
Q Consensus 238 ~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~ 317 (579)
+...+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++.+|+|+|++....... .........|||+|.
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~-~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSI-NDPQNGNALAILRYD 157 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSS-HSHGGGTTEEEEEET
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCC-ccCCCcEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999977899999997322211 222456789999998
Q ss_pred cC
Q 008066 318 SA 319 (579)
Q Consensus 318 ~~ 319 (579)
++
T Consensus 158 ~~ 159 (159)
T PF00394_consen 158 GA 159 (159)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.71 E-value=6e-16 Score=168.37 Aligned_cols=230 Identities=13% Similarity=0.142 Sum_probs=145.5
Q ss_pred EEEEcCCCCC--CeEEEecCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCCC----cccccccCCCCeEEEEEEecC
Q 008066 56 TITVNGMYPG--PTLEVNNGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTYRFTIQG 128 (579)
Q Consensus 56 ~~~~ng~~pg--P~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~~~~ 128 (579)
.+++||+.+. +++.+++|+++|+||.|.... ...++..|....... .||.+ .+....|.||||++..++. .
T Consensus 248 ~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~ 325 (587)
T TIGR01480 248 TYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-T 325 (587)
T ss_pred eEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-C
Confidence 3789999863 679999999999999999864 466777776543321 68843 2456779999999999986 4
Q ss_pred CCcceeeeecccccccceeeeEEEeCCC-CCCCC-CCCC----CCcee------------EEee-----ee---------
Q 008066 129 QEGTLWWHAHSSWLRATVYGALIIHPKE-GSSYP-FPKP----KRETP------------ILLG-----EW--------- 176 (579)
Q Consensus 129 ~~Gt~~yH~h~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----~~e~~------------l~~~-----d~--------- 176 (579)
..|.|+......+.. |...+.+..... ..+.| .+.. -.+.- +.+. +-
T Consensus 326 ~~g~~~i~a~~~~~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (587)
T TIGR01480 326 GDDAFTIFAQDSDRT-GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAP 404 (587)
T ss_pred CCceEEEEEEecCCC-ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCcccccccccc
Confidence 678999887654322 333233322111 10001 1000 00000 0000 00
Q ss_pred -ccC----------------------------------------ChHHHHH--Hhhh---------CCC-------CCCC
Q 008066 177 -WDA----------------------------------------NPIDVVR--QATR---------TGA-------APNI 197 (579)
Q Consensus 177 -~~~----------------------------------------~~~~~~~--~~~~---------~g~-------~~~~ 197 (579)
-+. .....+. .... .+. ....
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~ 484 (587)
T TIGR01480 405 MDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNME 484 (587)
T ss_pred CccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCc
Confidence 000 0000000 0000 000 0001
Q ss_pred CceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEE
Q 008066 198 SDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTT 277 (579)
Q Consensus 198 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~ 277 (579)
...|+|||+.++ ..+.+.++.|++|||||+|.+ ...+++|+|||.|.++..||.+ +...+++.|.||+++
T Consensus 485 ~~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~ 554 (587)
T TIGR01480 485 RFAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKR 554 (587)
T ss_pred eeEEEECCccCC-------CCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeeecCCCcc--cccCCceeeCCCCEE
Confidence 224899999862 234688999999999999988 5667999999999999888863 234588999999999
Q ss_pred EEEEEcCCCCcceEEEEEeccC
Q 008066 278 DVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 278 dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
++.|+++ +||.|++|||....
T Consensus 555 ~~~f~ad-~pG~w~~HCH~l~H 575 (587)
T TIGR01480 555 SFRVTAD-ALGRWAYHCHMLLH 575 (587)
T ss_pred EEEEECC-CCeEEEEcCCCHHH
Confidence 9999999 79999999996543
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.71 E-value=5.7e-17 Score=145.32 Aligned_cols=102 Identities=19% Similarity=0.306 Sum_probs=80.1
Q ss_pred CceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC---CCceEEeCCccccCCCCCCCCCcccccccCCC----Ce--E
Q 008066 50 LCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR---YNVTIHWHGVRQMRTAWADGPEFVTQCPIRPG----MS--Y 120 (579)
Q Consensus 50 ~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~---~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG----~~--~ 120 (579)
.+.....+.++|. ++|+|++++||+|+|+|+|.+. ..+.||+||......+.+||++.++++++.|+ +. .
T Consensus 37 ~~~~~~~f~~~~~-~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHDL-KNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecCC-CCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 4566677888885 5999999999999999999964 34667777765544444899999999999884 11 2
Q ss_pred EEEEEecCCCcceeeeeccccccc-ceeeeEEEe
Q 008066 121 TYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIH 153 (579)
Q Consensus 121 ~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~ 153 (579)
+++|+. .++||||||||..+++. ||+|+|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 444544 58999999999988886 999999995
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.71 E-value=1.6e-15 Score=153.78 Aligned_cols=247 Identities=15% Similarity=0.131 Sum_probs=153.5
Q ss_pred CceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCC-CccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccE
Q 008066 198 SDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGL-NQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQT 276 (579)
Q Consensus 198 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~-~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R 276 (579)
.+.+++||+. ..|.+++++|++++++|.|... ...+++|+|++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 3578999984 2378999999999999999863 256789999874 4677521 223899999
Q ss_pred EEEEEEcCCCCcceEEEEEeccCCCCCCCCCcceEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCccchhhcccCcCCCC
Q 008066 277 TDVLIKGDQPPSRYYLAARAYASAPNAPFDNTTTTAILEYKSAPCPAKKGLSIRPVMPPLPAFNDTATVTAFTKKLRSPQ 356 (579)
Q Consensus 277 ~dv~v~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~ 356 (579)
+.+.+.++ .+|.||+|||...... .. ...+..+.|....+.. .+ ..+... ..-++...
T Consensus 108 ~ty~F~~~-~~Gty~YH~H~~~~~~-~q-~~~Gl~G~liV~~~~~-----------~~---~~d~e~-----~l~l~d~~ 165 (311)
T TIGR02376 108 ATLRFKAT-RPGAFVYHCAPPGMVP-WH-VVSGMNGAIMVLPREG-----------LP---EYDKEY-----YIGESDLY 165 (311)
T ss_pred EEEEEEcC-CCEEEEEEcCCCCchh-HH-hhcCcceEEEeeccCC-----------Cc---CcceeE-----EEeeeeEe
Confidence 99999998 6999999999532100 00 1234556666554221 00 000000 00000000
Q ss_pred CCCCCCCCceeEEEEeccCcCCCCCCCCCCcccCCCCCeeeeeecceeeecCCchhhhhhcccCCCCcccCCCCCCCCcc
Q 008066 357 KVEVPTDIDESLFFTVGLGLNNCPRNFRSSRCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHHGIPGVFTTDFPANPPFK 436 (579)
Q Consensus 357 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~p~~ 436 (579)
-... ....... ..... .+....+ -..++||+....
T Consensus 166 ~~~~-~~~~~~~--~~~~~-----------~~~~~~~--~~~~iNG~~~~~----------------------------- 200 (311)
T TIGR02376 166 TPKD-EGEGGAY--EDDVA-----------AMRTLTP--THVVFNGAVGAL----------------------------- 200 (311)
T ss_pred cccc-ccccccc--cchHH-----------HHhcCCC--CEEEECCccCCC-----------------------------
Confidence 0000 0000000 00000 0000000 113455542210
Q ss_pred ccCCCCCCcCccccCCCceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCC--
Q 008066 437 FDYTGNVSRSLWQPVPGTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPP-- 514 (579)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~-- 514 (579)
.....++.|++++|.|.|.+ ....+.||++|++|.++....+. ..+.
T Consensus 201 -----------------~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~------------~~~~~~ 249 (311)
T TIGR02376 201 -----------------TGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKF------------ANPPNR 249 (311)
T ss_pred -----------------CCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcc------------cCCCCC
Confidence 01236789999999999965 34679999999999999984221 1222
Q ss_pred cceeEEeCCCcEEEEEEEecCceeEEEEecchhhH-HccceEEEEEec
Q 008066 515 LRNTVGVPVGGWAVIRFVADNPGVWLMHCHLDVHI-TWGLAMAFLVEN 561 (579)
Q Consensus 515 ~rDTv~vp~~g~v~irf~adnpG~wl~HCHi~~H~-~~GM~~~~~V~~ 561 (579)
..|++.|.||..+.|.++++.||.|.+|||...|+ ..|+++.+.|..
T Consensus 250 ~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 250 DVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred CcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 26899999999999999999999999999999998 779999998754
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.57 E-value=2.8e-13 Score=146.45 Aligned_cols=236 Identities=16% Similarity=0.177 Sum_probs=146.6
Q ss_pred eeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CCceEEe---CCccccCCCCCCCCC-----cccccccCCCCeEEE
Q 008066 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTIHW---HGVRQMRTAWADGPE-----FVTQCPIRPGMSYTY 122 (579)
Q Consensus 52 ~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~---HG~~~~~~~~~DGv~-----~~~~~~i~PG~~~~y 122 (579)
.....+++||+. .|.+.+. |.++|+||.|... ....+.+ |-+.+.+ .||.+ .+....|+||||++.
T Consensus 210 ~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dv 284 (523)
T PRK10965 210 WFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEV 284 (523)
T ss_pred ccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEE
Confidence 344678999996 7888885 6799999999986 3445555 4445554 68833 244667999999999
Q ss_pred EEEecCCCcceeeeecccccccce--------eeeEEEeCCC---CCCCC--------CCC----CCCceeEEeeeeccC
Q 008066 123 RFTIQGQEGTLWWHAHSSWLRATV--------YGALIIHPKE---GSSYP--------FPK----PKRETPILLGEWWDA 179 (579)
Q Consensus 123 ~f~~~~~~Gt~~yH~h~~~~~~Gl--------~G~liV~~~~---~~~~~--------~~~----~~~e~~l~~~d~~~~ 179 (579)
.++. .+.|.++...-..... |+ +-.+.|.... ....| .+. ..+...|.+..+...
T Consensus 285 lv~~-~~~~~~~l~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~ 362 (523)
T PRK10965 285 LVDT-SDGKAFDLVTLPVSQM-GMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDM 362 (523)
T ss_pred EEEc-CCCceEEEEEecccCc-ccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccch
Confidence 9987 4567777665321111 11 1122233211 00000 000 012333333221110
Q ss_pred ChH---------HHHHH--------h--------hhCCC---CC--CCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEE
Q 008066 180 NPI---------DVVRQ--------A--------TRTGA---AP--NISDAYTINGQPGDLYNCSSQDTVVVPIDSGETN 229 (579)
Q Consensus 180 ~~~---------~~~~~--------~--------~~~g~---~~--~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~ 229 (579)
... ..... . +..|. .. .....++|||+.++ ...+.++++.|+++
T Consensus 363 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e 436 (523)
T PRK10965 363 MGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYE 436 (523)
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEE
Confidence 000 00000 0 00000 00 00112489999763 23466889999999
Q ss_pred EEEEeecCCCccEEEEEcCCeeEEEeeCCcccC---ceEEeEEEECcccEEEEEEEcCC---CCcceEEEEEeccCCC
Q 008066 230 LLRVINSGLNQPLFFTIANHQFTVVGADASYLK---PFTTSVIMLGPGQTTDVLIKGDQ---PPSRYYLAARAYASAP 301 (579)
Q Consensus 230 rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~---p~~~d~l~l~pG~R~dv~v~~~~---~~g~~~l~~~~~~~~~ 301 (579)
+|+|+|.+....|+|||||++|+|++.||.+.. +.++||+.|.+ +++++++++++ .+|.|++|||.+...+
T Consensus 437 ~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed 513 (523)
T PRK10965 437 RWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHED 513 (523)
T ss_pred EEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhc
Confidence 999999997667899999999999999999764 46789999977 78999999983 4579999999876554
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.51 E-value=9.2e-13 Score=141.12 Aligned_cols=222 Identities=18% Similarity=0.230 Sum_probs=137.9
Q ss_pred ceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CCceEEe-CC--ccccCCCCCCCCC-----cccccccCCCCeEE
Q 008066 51 CKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTIHW-HG--VRQMRTAWADGPE-----FVTQCPIRPGMSYT 121 (579)
Q Consensus 51 g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~-HG--~~~~~~~~~DGv~-----~~~~~~i~PG~~~~ 121 (579)
|....++++||+. .|.|.|+.| ++|+||.|... ....+++ +| +.+.+ .||-. .+.+..|+||||++
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa---~DGg~~~~P~~~~~l~l~pGeR~d 280 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA---GDQGFLPAPVSVKQLSLAPGERRE 280 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE---eCCCcccCCcEeCeEEECCCCeEE
Confidence 3445779999996 799999875 89999999987 4466776 44 34454 58522 14567799999999
Q ss_pred EEEEecCCCcceeeeecccc-cccceee------------eEEEeCCCC---CCCCCCCCCCceeEEeeeeccCChHHHH
Q 008066 122 YRFTIQGQEGTLWWHAHSSW-LRATVYG------------ALIIHPKEG---SSYPFPKPKRETPILLGEWWDANPIDVV 185 (579)
Q Consensus 122 y~f~~~~~~Gt~~yH~h~~~-~~~Gl~G------------~liV~~~~~---~~~~~~~~~~e~~l~~~d~~~~~~~~~~ 185 (579)
..+++ .+.+.+.+++-... ....+.+ .+-+++... ...+.+...... ..........
T Consensus 281 vlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~~~- 353 (471)
T PRK10883 281 ILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPD-----EIMEGSPIRS- 353 (471)
T ss_pred EEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCC-----CCCCCCCcce-
Confidence 99997 45566666653211 1111111 111222110 000010000000 0000000000
Q ss_pred HHhhhCCCCCCCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCc--
Q 008066 186 RQATRTGAAPNISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKP-- 263 (579)
Q Consensus 186 ~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p-- 263 (579)
......+ +.++|||+.+. ...+.+.++.|++++|+|.|. ..|+||||||+|+|++.||....+
T Consensus 354 ~~~~l~~------~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~ 418 (471)
T PRK10883 354 REISLGD------DLPGINGALWD------MNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPED 418 (471)
T ss_pred EEEEecC------CcCccCCcccC------CCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccc
Confidence 0000011 12479999863 223457899999999999886 368999999999999999986533
Q ss_pred -eEEeEEEECcccEEEEEEEcCCCCc---ceEEEEEeccCCC
Q 008066 264 -FTTSVIMLGPGQTTDVLIKGDQPPS---RYYLAARAYASAP 301 (579)
Q Consensus 264 -~~~d~l~l~pG~R~dv~v~~~~~~g---~~~l~~~~~~~~~ 301 (579)
.+.||+.+. +++.+++++++..+ .|++|||.+...+
T Consensus 419 ~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD 458 (471)
T PRK10883 419 RGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMAD 458 (471)
T ss_pred cCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccc
Confidence 568999994 47999999996444 7999999877654
No 26
>PLN02835 oxidoreductase
Probab=99.50 E-value=3.8e-12 Score=138.21 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=155.0
Q ss_pred eeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCCCc----ccccccCCCCeEEEEEEecC
Q 008066 54 HNTITVNGMYPGPTLEVNNGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGPEF----VTQCPIRPGMSYTYRFTIQG 128 (579)
Q Consensus 54 ~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~f~~~~ 128 (579)
...++|||+. .|++++++|+++|+||.|.... ...+|..|.....- ..||.+- +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI-~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLV-EVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEE-EECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4679999997 5899999999999999999864 56777777665332 2688532 34567999999999999866
Q ss_pred CCcceeeeeccccccc--ceeeeEEEeCCCC-CCCCCCC---CC--------CceeEEeeeeccCChH--HHHH-Hh---
Q 008066 129 QEGTLWWHAHSSWLRA--TVYGALIIHPKEG-SSYPFPK---PK--------RETPILLGEWWDANPI--DVVR-QA--- 188 (579)
Q Consensus 129 ~~Gt~~yH~h~~~~~~--Gl~G~liV~~~~~-~~~~~~~---~~--------~e~~l~~~d~~~~~~~--~~~~-~~--- 188 (579)
.+|.||...-...... ...+.|-.+.... ...+.+. .+ ......+......... .... ..
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 6899999864211111 2223333322211 0001110 00 0000001000000000 0000 00
Q ss_pred ----hhCCCC-CCCCceEEEcCCCCCCC---------------CCCC------------CCeeeEEEecCCEEEEEEeec
Q 008066 189 ----TRTGAA-PNISDAYTINGQPGDLY---------------NCSS------------QDTVVVPIDSGETNLLRVINS 236 (579)
Q Consensus 189 ----~~~g~~-~~~~~~~liNG~~~~~~---------------~~~~------------~~~~~~~v~~G~~~rlRliN~ 236 (579)
...... ......+.|||..+... -|.. ...-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000000 00113578898876310 0100 012345778899999999998
Q ss_pred CCCccEEEEEcCCeeEEEee-CCcc----------cCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccCCCCCCC
Q 008066 237 GLNQPLFFTIANHQFTVVGA-DASY----------LKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYASAPNAPF 305 (579)
Q Consensus 237 g~~~~~~~~l~gh~~~via~-DG~~----------~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~~~~~~~ 305 (579)
+. ..|+||||||.|+|++. +|.+ ..|...||+.+.++....+.|++| +||.|.+|||.....
T Consensus 429 ~~-~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H~----- 501 (539)
T PLN02835 429 EK-TMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWERQ----- 501 (539)
T ss_pred CC-CCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhhh-----
Confidence 74 46799999999999987 5522 248899999999999999999999 799999999974322
Q ss_pred CCcceEEEEEecc
Q 008066 306 DNTTTTAILEYKS 318 (579)
Q Consensus 306 ~~~~~~~il~y~~ 318 (579)
..+...+++...
T Consensus 502 -~~Gm~~~~~V~~ 513 (539)
T PLN02835 502 -YLGQQFYLRVWN 513 (539)
T ss_pred -hcccEEEEEEcc
Confidence 234556666553
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.47 E-value=1.5e-11 Score=134.66 Aligned_cols=243 Identities=15% Similarity=0.152 Sum_probs=145.0
Q ss_pred eEEEEcCCC-C--------CCeEEEecCCEEEEEEEeCCC-CCceEEeCCccccCCCCCCCCCc----ccccccCCCCeE
Q 008066 55 NTITVNGMY-P--------GPTLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGPEF----VTQCPIRPGMSY 120 (579)
Q Consensus 55 ~~~~~ng~~-p--------gP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~ 120 (579)
..++|||+. + .++|+|++|+++++||.|... ....+|.+|.....- ..||.+- +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VI-a~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVV-EVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEE-EeCCcccCceEeCeEEecCCCEE
Confidence 578999984 1 148999999999999999975 446677777654332 2688542 346679999999
Q ss_pred EEEEEecCCCcceeeeeccccc-----cc-ceeeeEEEeCCCCCCCCC----CCCCC-----c----e-eEEeee--ecc
Q 008066 121 TYRFTIQGQEGTLWWHAHSSWL-----RA-TVYGALIIHPKEGSSYPF----PKPKR-----E----T-PILLGE--WWD 178 (579)
Q Consensus 121 ~y~f~~~~~~Gt~~yH~h~~~~-----~~-Gl~G~liV~~~~~~~~~~----~~~~~-----e----~-~l~~~d--~~~ 178 (579)
+..+++++.+|.||.+.+.... .. ...+.|..........+. +..+. + . .+.... +..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999985568999999874211 11 122333332222111110 00000 0 0 000000 000
Q ss_pred -CChHH----HHHHhhhCCC-----C-CCCCceEEEcCCCCCC--------------------C-------CC-CCC---
Q 008066 179 -ANPID----VVRQATRTGA-----A-PNISDAYTINGQPGDL--------------------Y-------NC-SSQ--- 216 (579)
Q Consensus 179 -~~~~~----~~~~~~~~g~-----~-~~~~~~~liNG~~~~~--------------------~-------~~-~~~--- 216 (579)
...+. .+........ . ....-.+.|||..+.. + -| +..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000000 0 0011235788875310 0 00 000
Q ss_pred -------CeeeEEEecCCEEEEEEeecCC--CccEEEEEcCCeeEEEeeC-Ccc-----------cCceEEeEEEECccc
Q 008066 217 -------DTVVVPIDSGETNLLRVINSGL--NQPLFFTIANHQFTVVGAD-ASY-----------LKPFTTSVIMLGPGQ 275 (579)
Q Consensus 217 -------~~~~~~v~~G~~~rlRliN~g~--~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~l~l~pG~ 275 (579)
....+.++.|++|++.|.|.+. ...|+||||||.|+|++.. |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1235788899999999999752 3478999999999999886 321 147788999999999
Q ss_pred EEEEEEEcCCCCcceEEEEEeccC
Q 008066 276 TTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 276 R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
.+.|.+++| +||.|.+|||..-.
T Consensus 486 ~vvirf~ad-NPG~W~~HCHi~~H 508 (539)
T TIGR03389 486 WAAIRFVAD-NPGVWFMHCHLEVH 508 (539)
T ss_pred eEEEEEecC-CCeEEEEEecccch
Confidence 999999999 79999999997443
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.42 E-value=2e-12 Score=111.77 Aligned_cols=105 Identities=21% Similarity=0.202 Sum_probs=79.9
Q ss_pred ccCceEEEEEEEE--EEee---ecCceeeeEE-EEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCC
Q 008066 31 ANAKAHHHDFVIQ--ATPV---KRLCKTHNTI-TVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWAD 104 (579)
Q Consensus 31 ~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D 104 (579)
+.+..++|+++|+ +..+ +..|.....+ ++|+++..+.|+|++||+|++++.|..+.++.+-.++.
T Consensus 20 ~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~--------- 90 (135)
T TIGR03096 20 AQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAY--------- 90 (135)
T ss_pred hhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCC---------
Confidence 3456889999999 6555 4578887777 99999998999999999999999999876543222221
Q ss_pred CCCcccccccCCCCeEEEEEEecCCCcceeeeecccccccceeee
Q 008066 105 GPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRATVYGA 149 (579)
Q Consensus 105 Gv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~Gl~G~ 149 (579)
|. +..|+||++.+++|+. +++|+|||||..+...--|-|.
T Consensus 91 gi----s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~~H~~~~ 130 (135)
T TIGR03096 91 GI----SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKNIHLPGS 130 (135)
T ss_pred Cc----ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChhhcCCCc
Confidence 11 2359999999999985 9999999999887544333333
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=2.6e-11 Score=130.39 Aligned_cols=237 Identities=19% Similarity=0.198 Sum_probs=149.0
Q ss_pred ceeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCC-CCCceEEeCCccccCCCCCCCCC----cccccccCCCCeEEEEEE
Q 008066 51 CKTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKA-RYNVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTYRFT 125 (579)
Q Consensus 51 g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~ 125 (579)
|.......+||+. -|.+ ..+|..+++||.|.. .....+++.|....... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-ccee-ecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 5667788888855 3444 555555999999998 55666777655443322 57754 466788999999999998
Q ss_pred ecCCCcceeeeecccccccceeeeEEEeCCCCCCCCC-------CCCC---CceeEEeeeeccCChHHHHHHhhhCCCCC
Q 008066 126 IQGQEGTLWWHAHSSWLRATVYGALIIHPKEGSSYPF-------PKPK---RETPILLGEWWDANPIDVVRQATRTGAAP 195 (579)
Q Consensus 126 ~~~~~Gt~~yH~h~~~~~~Gl~G~liV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 195 (579)
. ...|++-+.+.......-+.+..-.........+. +..+ ......................... ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 7 44889999988722111222221111111000000 0001 1111111111111100000000000 01
Q ss_pred CCCceEEEcCCCCCCCCCCCCCeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCccc--CceEEeEEEECc
Q 008066 196 NISDAYTINGQPGDLYNCSSQDTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL--KPFTTSVIMLGP 273 (579)
Q Consensus 196 ~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~--~p~~~d~l~l~p 273 (579)
.....+.+||+.++. ....+.++.|+++||+|.|-+. ..|+||+||+.|+|++.|...- .+.++|++.+.+
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 122458889987631 2466899999999999999997 7779999999999999982222 467899999999
Q ss_pred ccEEEEEEEcCCCCcceEEEEEeccCCC
Q 008066 274 GQTTDVLIKGDQPPSRYYLAARAYASAP 301 (579)
Q Consensus 274 G~R~dv~v~~~~~~g~~~l~~~~~~~~~ 301 (579)
++++.+.++++ .+|.|++|||.+...+
T Consensus 413 ~~~~~v~~~a~-~~g~~~~HCH~l~H~~ 439 (451)
T COG2132 413 GERLLVRFDAD-YPGPWMFHCHILEHED 439 (451)
T ss_pred CeEEEEEEeCC-CCCceEEeccchhHhh
Confidence 99999999999 6889999999865543
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.26 E-value=7.1e-10 Score=120.29 Aligned_cols=240 Identities=20% Similarity=0.198 Sum_probs=143.6
Q ss_pred eeEEEEcCCCC-CCeEEEecCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCCC----cccccccCCCCeEEEEEEec
Q 008066 54 HNTITVNGMYP-GPTLEVNNGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTYRFTIQ 127 (579)
Q Consensus 54 ~~~~~~ng~~p-gP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~~~ 127 (579)
...+++||+.+ .|+|.+++|+++|+|+.|.... ...++..|.....- ..||.+ .+.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVI-a~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLV-ETEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEE-EECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 45789999952 4799999999999999999754 45566666544332 168842 24567799999999999985
Q ss_pred CCC-c---ceeeeeccccccccee-eeEEEeCCCCCC--CCCC---CC-CC----ceeEEeeeecc----CC-hHH---H
Q 008066 128 GQE-G---TLWWHAHSSWLRATVY-GALIIHPKEGSS--YPFP---KP-KR----ETPILLGEWWD----AN-PID---V 184 (579)
Q Consensus 128 ~~~-G---t~~yH~h~~~~~~Gl~-G~liV~~~~~~~--~~~~---~~-~~----e~~l~~~d~~~----~~-~~~---~ 184 (579)
+++ | .||...-.......+. .+++........ .|.+ .. +. +..+.+..-.. .. ... .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 443 4 7998866421111111 133333222110 1111 00 00 11000000000 00 000 0
Q ss_pred ----H-HHhhhCCCC--CCCCceEEEcCCCCCC----------CC---CC--C------------CCeeeEEEecCCEEE
Q 008066 185 ----V-RQATRTGAA--PNISDAYTINGQPGDL----------YN---CS--S------------QDTVVVPIDSGETNL 230 (579)
Q Consensus 185 ----~-~~~~~~g~~--~~~~~~~liNG~~~~~----------~~---~~--~------------~~~~~~~v~~G~~~r 230 (579)
. ......... ......+.|||..+.. +. .. . .....+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 0 000000000 0011357889887631 00 00 0 012346788899999
Q ss_pred EEEeecCCCccEEEEEcCCeeEEEee-----CC------cccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEe
Q 008066 231 LRVINSGLNQPLFFTIANHQFTVVGA-----DA------SYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARA 296 (579)
Q Consensus 231 lRliN~g~~~~~~~~l~gh~~~via~-----DG------~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~ 296 (579)
+-|-|.. ...|+||||||.|+|++. |+ ++..|...||+.+.++.-+-|.+++| +||-|.+|||.
T Consensus 427 iViqn~~-~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPL-FSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQK 501 (545)
T ss_pred EEEeCCC-CCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecC
Confidence 9888876 447799999999999976 21 23478899999999999999999999 79999999995
No 31
>PLN02991 oxidoreductase
Probab=99.26 E-value=2e-09 Score=116.65 Aligned_cols=242 Identities=15% Similarity=0.140 Sum_probs=143.5
Q ss_pred eeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCCC----cccccccCCCCeEEEEEEec
Q 008066 53 THNTITVNGMYPGPTLEVNNGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTYRFTIQ 127 (579)
Q Consensus 53 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~~~ 127 (579)
....++|||+...++++|++|+++++||.|.... ...++..|.....-. .||.+ .+....|+||||++...+++
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 3468899999655899999999999999999864 355566565433221 68854 24567799999999999987
Q ss_pred CCCcceeeeeccccccc--ceeeeEEEeCCCC-CCCCCCC--CCCceeEEee---eecc-----CC-hHH---H----HH
Q 008066 128 GQEGTLWWHAHSSWLRA--TVYGALIIHPKEG-SSYPFPK--PKRETPILLG---EWWD-----AN-PID---V----VR 186 (579)
Q Consensus 128 ~~~Gt~~yH~h~~~~~~--Gl~G~liV~~~~~-~~~~~~~--~~~e~~l~~~---d~~~-----~~-~~~---~----~~ 186 (579)
+..|.||.-........ .-.+.|-...... ...+.+. .+.+...-.. ++.. .. ... . ..
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 77889997654311111 1122222222211 0001110 0000000000 0000 00 000 0 00
Q ss_pred -Hh-hhCCCC-CCCCceEEEcCCCCCCC----------CCC-----------------CCCeeeEEEecCCEEEEEEeec
Q 008066 187 -QA-TRTGAA-PNISDAYTINGQPGDLY----------NCS-----------------SQDTVVVPIDSGETNLLRVINS 236 (579)
Q Consensus 187 -~~-~~~g~~-~~~~~~~liNG~~~~~~----------~~~-----------------~~~~~~~~v~~G~~~rlRliN~ 236 (579)
.. ...+.. ......+.|||..+... .-+ ....-.+.++.|++|.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 00 000000 00112567888765310 000 0112345778889999988887
Q ss_pred CCCccEEEEEcCCeeEEEeeCC-----------cccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEec
Q 008066 237 GLNQPLFFTIANHQFTVVGADA-----------SYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAY 297 (579)
Q Consensus 237 g~~~~~~~~l~gh~~~via~DG-----------~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~ 297 (579)
.. ..|+||||||.|.|++... ++..|...|++.+.++.-.-|.+++| +||-|.+|||..
T Consensus 428 ~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi~ 497 (543)
T PLN02991 428 ED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSELW 497 (543)
T ss_pred CC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCcc
Confidence 64 4679999999999997531 12368889999999999999999999 799999999973
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=99.23 E-value=7.3e-10 Score=120.68 Aligned_cols=241 Identities=12% Similarity=0.146 Sum_probs=146.0
Q ss_pred eeEEEEcCCCC------CCeEEEecCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCCC----cccccccCCCCeEEE
Q 008066 54 HNTITVNGMYP------GPTLEVNNGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTY 122 (579)
Q Consensus 54 ~~~~~~ng~~p------gP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y 122 (579)
...++|||+.. -|+|+|++|++.++||.|.... ...++..|.....- ..||++ .+....|+||||++.
T Consensus 189 ~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVI-a~DG~~v~p~~~~~l~i~~GqRydV 267 (552)
T PLN02354 189 PDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLV-EMEGSHVLQNDYDSLDVHVGQCFSV 267 (552)
T ss_pred CCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEE-EeCCcccCCcceeEEEEccCceEEE
Confidence 35789999841 3799999999999999999864 56677777654332 278854 244567999999999
Q ss_pred EEEecCCCcceeeeeccccccc--ceeeeEEEeCCCCCC-CCCCCCCCce--eE-Eeeeecc-------CC---hHHH--
Q 008066 123 RFTIQGQEGTLWWHAHSSWLRA--TVYGALIIHPKEGSS-YPFPKPKRET--PI-LLGEWWD-------AN---PIDV-- 184 (579)
Q Consensus 123 ~f~~~~~~Gt~~yH~h~~~~~~--Gl~G~liV~~~~~~~-~~~~~~~~e~--~l-~~~d~~~-------~~---~~~~-- 184 (579)
.+++++.+|.||.......... ...|.|......... ...+...... .. ...+... .. ....
T Consensus 268 lv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 347 (552)
T PLN02354 268 LVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYG 347 (552)
T ss_pred EEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccc
Confidence 9998666899999887432111 223333333221100 0011000000 00 0000000 00 0000
Q ss_pred -H---HHh-hhCCC-CCCCCceEEEcCCCCCCC----------CCC--------------------CCCeeeEEEecCCE
Q 008066 185 -V---RQA-TRTGA-APNISDAYTINGQPGDLY----------NCS--------------------SQDTVVVPIDSGET 228 (579)
Q Consensus 185 -~---~~~-~~~g~-~~~~~~~~liNG~~~~~~----------~~~--------------------~~~~~~~~v~~G~~ 228 (579)
. ... ..... .......+.|||..+... +.. ......+.++.|++
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~ 427 (552)
T PLN02354 348 KINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTF 427 (552)
T ss_pred cccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCE
Confidence 0 000 00000 000113567888765210 000 00123567788999
Q ss_pred EEEEEeecCCCccEEEEEcCCeeEEEeeCC-----------cccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEec
Q 008066 229 NLLRVINSGLNQPLFFTIANHQFTVVGADA-----------SYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAY 297 (579)
Q Consensus 229 ~rlRliN~g~~~~~~~~l~gh~~~via~DG-----------~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~ 297 (579)
|.+-|.|.. ...|+||||||.|+|++.-- +...|...|++.+.++.-.-+.+++| +||-|.+|||..
T Consensus 428 VeiVi~n~~-~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPGvW~~HCHi~ 505 (552)
T PLN02354 428 VEIIFENHE-KSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD-NAGMWNIRSENW 505 (552)
T ss_pred EEEEEeCCC-CCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec-CCeEEeeecccc
Confidence 999999986 44679999999999996642 12358899999999999999999999 799999999973
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.22 E-value=5.9e-10 Score=121.72 Aligned_cols=241 Identities=19% Similarity=0.234 Sum_probs=141.8
Q ss_pred eEEEEcCCC---------------CCCeEEEecCCEEEEEEEeCCCC-CceEEeCC---ccccCCCCCCCCCc----ccc
Q 008066 55 NTITVNGMY---------------PGPTLEVNNGDTLVVKVTNKARY-NVTIHWHG---VRQMRTAWADGPEF----VTQ 111 (579)
Q Consensus 55 ~~~~~ng~~---------------pgP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG---~~~~~~~~~DGv~~----~~~ 111 (579)
..+++||+. ..|+|+|++|+++++||.|.... ...+++.| +.+.. .||.+- +..
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa---~DG~~~~P~~v~~ 248 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE---ADGSYTKPAKIDH 248 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE---eCCCCCCceEeCe
Confidence 468899983 12789999999999999999864 34555555 44444 688531 345
Q ss_pred cccCCCCeEEEEEEecCC-------Ccceeeeeccccccc--ceeeeEEEeCCCCCCCC-CCC-----C------CCcee
Q 008066 112 CPIRPGMSYTYRFTIQGQ-------EGTLWWHAHSSWLRA--TVYGALIIHPKEGSSYP-FPK-----P------KRETP 170 (579)
Q Consensus 112 ~~i~PG~~~~y~f~~~~~-------~Gt~~yH~h~~~~~~--Gl~G~liV~~~~~~~~~-~~~-----~------~~e~~ 170 (579)
..|.||||++..+++++. +|-||-..-...... ...+.|..+.......+ .+. . ..+..
T Consensus 249 l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 328 (538)
T TIGR03390 249 LQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYE 328 (538)
T ss_pred EEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhhee
Confidence 669999999999998433 488987764322111 12333333212111111 000 0 01111
Q ss_pred EE-eeeecc---CChHHHHHHh-hhCCCC--C-CCCceEEEcCCCCCC--C----------C---C------------CC
Q 008066 171 IL-LGEWWD---ANPIDVVRQA-TRTGAA--P-NISDAYTINGQPGDL--Y----------N---C------------SS 215 (579)
Q Consensus 171 l~-~~d~~~---~~~~~~~~~~-~~~g~~--~-~~~~~~liNG~~~~~--~----------~---~------------~~ 215 (579)
+. +..-.. .......... ...+.. . .....+++||..+.. . + . ..
T Consensus 329 l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
T TIGR03390 329 LEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFD 408 (538)
T ss_pred eEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcC
Confidence 11 000000 0000000000 000000 0 112457889886642 0 0 0 00
Q ss_pred CCeeeEEEecCCEEEEEEeecC-------CCccEEEEEcCCeeEEEee-CCcc-----------cCceEEeEEEEC----
Q 008066 216 QDTVVVPIDSGETNLLRVINSG-------LNQPLFFTIANHQFTVVGA-DASY-----------LKPFTTSVIMLG---- 272 (579)
Q Consensus 216 ~~~~~~~v~~G~~~rlRliN~g-------~~~~~~~~l~gh~~~via~-DG~~-----------~~p~~~d~l~l~---- 272 (579)
...-.+.++.|++|+|.|.|.. ....|+||+|||+|.|++. +|.+ ..|...||+.+.
T Consensus 409 ~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~ 488 (538)
T TIGR03390 409 PETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAV 488 (538)
T ss_pred cCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccc
Confidence 1122577888999999999975 2567899999999999985 4532 258889999984
Q ss_pred ------cccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 273 ------PGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 273 ------pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
++.-+.+.++++ +||.|.+|||....
T Consensus 489 ~~~~~~~~~~~~ir~~~d-NPG~W~~HCHi~~H 520 (538)
T TIGR03390 489 KVVPGAPAGWRAWRIRVT-NPGVWMMHCHILQH 520 (538)
T ss_pred cccccCCCceEEEEEEcC-CCeeEEEeccchhh
Confidence 788889999999 79999999997443
No 34
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.22 E-value=6.3e-10 Score=121.79 Aligned_cols=231 Identities=16% Similarity=0.151 Sum_probs=134.2
Q ss_pred eEEEecCCEEEEEEEeCCC-CCceEEeCCccccCCCCCCCCC----cccccccCCCCeEEEEEEecCCC-cceeeeeccc
Q 008066 67 TLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTYRFTIQGQE-GTLWWHAHSS 140 (579)
Q Consensus 67 ~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~~~~~~-Gt~~yH~h~~ 140 (579)
.|.|++|+++|+||.|... ....++++|.....- ..||.+ .+....|.||||++..++++..+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI-a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV-EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEE-EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 5899999999999999874 455555555443221 168843 24466799999999999984444 5899987644
Q ss_pred cccc--ceeeeEEEeCCCCC-CCC------CCCCCC-------ceeEEeeeeccCChHHHHHHh--hhCCCCCCCCceEE
Q 008066 141 WLRA--TVYGALIIHPKEGS-SYP------FPKPKR-------ETPILLGEWWDANPIDVVRQA--TRTGAAPNISDAYT 202 (579)
Q Consensus 141 ~~~~--Gl~G~liV~~~~~~-~~~------~~~~~~-------e~~l~~~d~~~~~~~~~~~~~--~~~g~~~~~~~~~l 202 (579)
+... ....+++....... ..+ .+..+. +..++-............... ...+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 3311 11123444322111 000 000000 000000000000000000000 00000000112367
Q ss_pred EcCCCCCC-------------------------CCCC------------CCCeeeEEEecCCEEEEEEeecCC-----Cc
Q 008066 203 INGQPGDL-------------------------YNCS------------SQDTVVVPIDSGETNLLRVINSGL-----NQ 240 (579)
Q Consensus 203 iNG~~~~~-------------------------~~~~------------~~~~~~~~v~~G~~~rlRliN~g~-----~~ 240 (579)
+||..+.. +.|. ....-.+.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 88876520 0000 001234788899999999999752 45
Q ss_pred cEEEEEcCCeeEEEeeC-Ccc-----------cCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 241 PLFFTIANHQFTVVGAD-ASY-----------LKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 241 ~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
.|+||+|||.|+|++.. |.+ ..|...||+.+.++.-+-|.+++| +||-|.+|||..-.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~H 512 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEPH 512 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchhh
Confidence 68999999999999987 432 147788999999999999999999 79999999997543
No 35
>PLN02792 oxidoreductase
Probab=99.21 E-value=5e-09 Score=113.69 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=144.8
Q ss_pred eeeEEEEcCCCC--CCeEEEecCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCCC----cccccccCCCCeEEEEEE
Q 008066 53 THNTITVNGMYP--GPTLEVNNGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGPE----FVTQCPIRPGMSYTYRFT 125 (579)
Q Consensus 53 ~~~~~~~ng~~p--gP~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~ 125 (579)
....++|||+-. .++|.|++|+++++||.|.... ...++..|..+..- ..||.+ .+....|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI-~~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLI-EVEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEE-EeCCccCCCcceeEEEEccCceEEEEEE
Confidence 347899999842 4789999999999999999864 45666666554332 168843 234667999999999999
Q ss_pred ecCCCcceeeeecccccccceee-eEEEeCCCCCCC---C-CCCC-CCceeEEe---eeeccC------ChHH---H--H
Q 008066 126 IQGQEGTLWWHAHSSWLRATVYG-ALIIHPKEGSSY---P-FPKP-KRETPILL---GEWWDA------NPID---V--V 185 (579)
Q Consensus 126 ~~~~~Gt~~yH~h~~~~~~Gl~G-~liV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~------~~~~---~--~ 185 (579)
+++.+|.||...........+.+ +++-........ + .+.. +.....-. .++... .... . .
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 86668999988764211111111 333332211110 0 0000 00000000 000000 0000 0 0
Q ss_pred ---HHh-hhCCCC-CCCCceEEEcCCCCCC----------C---CC-C--------------CCCeeeEEEecCCEEEEE
Q 008066 186 ---RQA-TRTGAA-PNISDAYTINGQPGDL----------Y---NC-S--------------SQDTVVVPIDSGETNLLR 232 (579)
Q Consensus 186 ---~~~-~~~g~~-~~~~~~~liNG~~~~~----------~---~~-~--------------~~~~~~~~v~~G~~~rlR 232 (579)
... ...... ....-.+.|||..+.. + +. + .....++.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 000 000000 0001246788886531 0 00 0 002345688889999999
Q ss_pred EeecCCCccEEEEEcCCeeEEEeeC-C----------cccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEec
Q 008066 233 VINSGLNQPLFFTIANHQFTVVGAD-A----------SYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAY 297 (579)
Q Consensus 233 liN~g~~~~~~~~l~gh~~~via~D-G----------~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~ 297 (579)
|-|... ..|+||||||.|+|++.- | +++.|...||+.+.++.-.-+.+++| +||-|.+|||..
T Consensus 417 iqn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~~ 490 (536)
T PLN02792 417 FQNREK-IVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQFW 490 (536)
T ss_pred EECCCC-CCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcch
Confidence 999753 357999999999999742 1 23368899999999999999999999 799999999853
No 36
>PLN02604 oxidoreductase
Probab=99.18 E-value=6.2e-10 Score=122.30 Aligned_cols=228 Identities=15% Similarity=0.184 Sum_probs=134.0
Q ss_pred CeEEEecCCEEEEEEEeCCCC-CceEEeCCc--cccCCCCCCCCC----cccccccCCCCeEEEEEEecCCCc-ceeeee
Q 008066 66 PTLEVNNGDTLVVKVTNKARY-NVTIHWHGV--RQMRTAWADGPE----FVTQCPIRPGMSYTYRFTIQGQEG-TLWWHA 137 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~-~~siH~HG~--~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~~~~~~G-t~~yH~ 137 (579)
++|.+++|+++++||.|.... ...++..|. .+.. .||.+ .+....|.||||++..+++++.+| .||-..
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa---~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira 300 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE---ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTT 300 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE---eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEE
Confidence 489999999999999999753 444455444 4443 68843 245667999999999999855555 799886
Q ss_pred ccccc---c-cceeeeEEEeCCCCC-C-CCCCCC----CCceeEEeeeec---------cCChHHHHHHh--hhCCCCCC
Q 008066 138 HSSWL---R-ATVYGALIIHPKEGS-S-YPFPKP----KRETPILLGEWW---------DANPIDVVRQA--TRTGAAPN 196 (579)
Q Consensus 138 h~~~~---~-~Gl~G~liV~~~~~~-~-~~~~~~----~~e~~l~~~d~~---------~~~~~~~~~~~--~~~g~~~~ 196 (579)
..... . .+. +++....... . .+.... ..+....+.... ........... ........
T Consensus 301 ~~~~~~~~~~~~~--aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 378 (566)
T PLN02604 301 SVVSRNNTTPPGL--AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVN 378 (566)
T ss_pred ecccCCCCCccee--EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccC
Confidence 43221 1 122 3333222110 0 000000 000000000000 00000000000 00000000
Q ss_pred CCceEEEcCCCCCCC---------------CCC-----------------------CCCeeeEEEecCCEEEEEEeecCC
Q 008066 197 ISDAYTINGQPGDLY---------------NCS-----------------------SQDTVVVPIDSGETNLLRVINSGL 238 (579)
Q Consensus 197 ~~~~~liNG~~~~~~---------------~~~-----------------------~~~~~~~~v~~G~~~rlRliN~g~ 238 (579)
....+.|||..+... -|. .....++.++.|++|.+.|.|...
T Consensus 379 ~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~ 458 (566)
T PLN02604 379 GYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANT 458 (566)
T ss_pred CeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcc
Confidence 113577888765210 000 001124788899999999999852
Q ss_pred -----CccEEEEEcCCeeEEEeeC-Ccc-----------cCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 239 -----NQPLFFTIANHQFTVVGAD-ASY-----------LKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 239 -----~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
...|+||+|||.|+|++.. |.+ ..|...||+.+.++.-+-|.+++| +||-|.+|||..-.
T Consensus 459 ~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~~H 535 (566)
T PLN02604 459 MNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIESH 535 (566)
T ss_pred ccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecchhH
Confidence 4568999999999999987 432 147788999999999999999999 79999999996433
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.05 E-value=1.3e-08 Score=111.81 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=135.3
Q ss_pred EEcCCCCCCeEEEecCCEEEEEEEeCCC-CCceEEeCCccccCCCCCCCCCc----ccccccCCCCeEEEEEEecCCC-c
Q 008066 58 TVNGMYPGPTLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGPEF----VTQCPIRPGMSYTYRFTIQGQE-G 131 (579)
Q Consensus 58 ~~ng~~pgP~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DGv~~----~~~~~i~PG~~~~y~f~~~~~~-G 131 (579)
.+||+.-.++|.|++|++.++||.|... ....+++.|..+..- ..||.+- +....|+||||++..+++++.+ +
T Consensus 218 ~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVI-a~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~ 296 (574)
T PLN02191 218 KEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVV-EADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQ 296 (574)
T ss_pred ccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEE-EcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCC
Confidence 3455432237999999999999999975 344455555443222 1688542 3466799999999999985555 4
Q ss_pred ceeeeecccccc----cceeeeEEEe-CCCCCCCCC------CCCCC-----ceeEE-eeeec-cCChHHHHHHh--hhC
Q 008066 132 TLWWHAHSSWLR----ATVYGALIIH-PKEGSSYPF------PKPKR-----ETPIL-LGEWW-DANPIDVVRQA--TRT 191 (579)
Q Consensus 132 t~~yH~h~~~~~----~Gl~G~liV~-~~~~~~~~~------~~~~~-----e~~l~-~~d~~-~~~~~~~~~~~--~~~ 191 (579)
.||-..-..... .++ +++-. .......+. +..+. ..... +.... ........... ...
T Consensus 297 ~y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 374 (574)
T PLN02191 297 NYYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT 374 (574)
T ss_pred CEEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc
Confidence 899886433211 132 33322 222110010 00000 00000 00000 00000000000 000
Q ss_pred CCCCCCCceEEEcCCCCCCCC------------------------------CC-------CCCeeeEEEecCCEEEEEEe
Q 008066 192 GAAPNISDAYTINGQPGDLYN------------------------------CS-------SQDTVVVPIDSGETNLLRVI 234 (579)
Q Consensus 192 g~~~~~~~~~liNG~~~~~~~------------------------------~~-------~~~~~~~~v~~G~~~rlRli 234 (579)
.........+.+||..+.... |. ....-.+.++.|++|.+=|.
T Consensus 375 ~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~ 454 (574)
T PLN02191 375 QNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQ 454 (574)
T ss_pred cceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEE
Confidence 000001125677777542000 00 01122456777999999999
Q ss_pred ecC-----CCccEEEEEcCCeeEEEeeCCc------------ccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEec
Q 008066 235 NSG-----LNQPLFFTIANHQFTVVGADAS------------YLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAY 297 (579)
Q Consensus 235 N~g-----~~~~~~~~l~gh~~~via~DG~------------~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~ 297 (579)
|.. ....|+||+|||+|+|++..-. ...|...|++.+.++.-+-+.+++| +||-|.+|||..
T Consensus 455 n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~ 533 (574)
T PLN02191 455 NANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIE 533 (574)
T ss_pred CCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCch
Confidence 875 3567899999999999965432 1257789999999999999999999 799999999975
Q ss_pred cC
Q 008066 298 AS 299 (579)
Q Consensus 298 ~~ 299 (579)
..
T Consensus 534 ~H 535 (574)
T PLN02191 534 PH 535 (574)
T ss_pred hh
Confidence 43
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.01 E-value=2.4e-09 Score=95.94 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=73.3
Q ss_pred CeeeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCccc-----------CceEEeEEEECcccEEEEEEEcCC
Q 008066 217 DTVVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL-----------KPFTTSVIMLGPGQTTDVLIKGDQ 285 (579)
Q Consensus 217 ~~~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~-----------~p~~~d~l~l~pG~R~dv~v~~~~ 285 (579)
....+.++.|++++|+|.|.+ ...++||+|||.|+|++.++... .|..+|++.|.+|+++.+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCC-CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 346899999999999999988 44779999999999999999883 68899999999999999999999
Q ss_pred CCcceEEEEEeccC
Q 008066 286 PPSRYYLAARAYAS 299 (579)
Q Consensus 286 ~~g~~~l~~~~~~~ 299 (579)
.||.|.+|||....
T Consensus 110 ~~G~w~~HCHi~~H 123 (138)
T PF07731_consen 110 NPGPWLFHCHILEH 123 (138)
T ss_dssp STEEEEEEESSHHH
T ss_pred cceEEEEEEchHHH
Confidence 89999999997643
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.91 E-value=1e-07 Score=104.20 Aligned_cols=225 Identities=20% Similarity=0.222 Sum_probs=130.6
Q ss_pred CeEEEecCCEEEEEEEeCCCC-CceEEeCC--ccccCCCCCCCCC----cccccccCCCCeEEEEEEecCCCc-ceeeee
Q 008066 66 PTLEVNNGDTLVVKVTNKARY-NVTIHWHG--VRQMRTAWADGPE----FVTQCPIRPGMSYTYRFTIQGQEG-TLWWHA 137 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~-~~siH~HG--~~~~~~~~~DGv~----~~~~~~i~PG~~~~y~f~~~~~~G-t~~yH~ 137 (579)
++|.|++|++.++||.|.... ...++..| +.+.. .||.+ .+....|.||||++...++++.+| .||.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa---~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a 293 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE---AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVA 293 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE---eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEE
Confidence 589999999999999999753 44444444 44443 68843 234667999999999999855555 798864
Q ss_pred ccc--cc--ccceeeeEEEeCCCCC-----CCCC-CCCCCcee------EEeeeeccCC------h---HHH----HH-H
Q 008066 138 HSS--WL--RATVYGALIIHPKEGS-----SYPF-PKPKRETP------ILLGEWWDAN------P---IDV----VR-Q 187 (579)
Q Consensus 138 h~~--~~--~~Gl~G~liV~~~~~~-----~~~~-~~~~~e~~------l~~~d~~~~~------~---~~~----~~-~ 187 (579)
-.. .. ..-+.|.-|++-.+.. +.|. +....+.. ..+. +.... . ... +. .
T Consensus 294 ~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~ 372 (596)
T PLN00044 294 SARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIR-WNVTASGARPNPQGSFHYGDITVTDV 372 (596)
T ss_pred ecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhh-hccCCCcCCCCCcccceeeEEeeeee
Confidence 321 10 1111222222222211 1111 10000000 0000 00000 0 000 00 0
Q ss_pred hhhCCC-CCCC--CceEEEcCCCCCC----------CCCCC-------C---------CeeeEEEecCCEEEEEEeecCC
Q 008066 188 ATRTGA-APNI--SDAYTINGQPGDL----------YNCSS-------Q---------DTVVVPIDSGETNLLRVINSGL 238 (579)
Q Consensus 188 ~~~~g~-~~~~--~~~~liNG~~~~~----------~~~~~-------~---------~~~~~~v~~G~~~rlRliN~g~ 238 (579)
....+. ...+ .-.++|||..+.. ++-+. . ...+..++.+++|.+-|-|..
T Consensus 373 ~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~- 451 (596)
T PLN00044 373 YLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA- 451 (596)
T ss_pred eeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-
Confidence 000000 0000 1246788876431 11000 0 234567788999999999875
Q ss_pred CccEEEEEcCCeeEEEeeCC-----------cccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEe
Q 008066 239 NQPLFFTIANHQFTVVGADA-----------SYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARA 296 (579)
Q Consensus 239 ~~~~~~~l~gh~~~via~DG-----------~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~ 296 (579)
...|+||||||.|.|++... +++.|...|++.+.+|.-.-|.+++| +||-|.+|||.
T Consensus 452 ~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aD-NPG~W~lHCH~ 519 (596)
T PLN00044 452 TNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLD-NAGIWNLRVEN 519 (596)
T ss_pred CCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecC-CCEEehhhccC
Confidence 44779999999999996544 23468889999999999999999999 79999999994
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.82 E-value=3.3e-08 Score=85.46 Aligned_cols=91 Identities=23% Similarity=0.280 Sum_probs=68.8
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+++.++.|++|++.+.|.. ..++.+|+||...-- . +..|...... .-.|+||+..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~--~------~~~DG~~~~~-------~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPP--S------PWMDGVPGVT-------QCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTT--G------GGGSGGTTTS-------GSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeee--e------eecCCccccc-------ceeEEeecceeeeEee
Confidence 46899999999999999964 678999999975410 0 0011100000 1247889999999999
Q ss_pred cC-ceeEEEEecchhhHHccceEEEEEecC
Q 008066 534 DN-PGVWLMHCHLDVHITWGLAMAFLVENG 562 (579)
Q Consensus 534 dn-pG~wl~HCHi~~H~~~GM~~~~~V~~~ 562 (579)
+. +|.|.||||...|...||.+.+.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 87 999999999999988999999999763
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.81 E-value=6.1e-08 Score=84.17 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=54.1
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeecccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRAT 145 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~G 145 (579)
+.|++++||+| +++|....++++.+.|.... ..+...+.||++++|.|+ ++|+|-|+|-.| ..+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~---------~~~~~~~~pg~t~~~tF~---~~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL---------SHKDLAFAPGESWEETFS---EAGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCccc---------cccccccCCCCEEEEEec---CCEEEEEEcCCC-ccCC
Confidence 78999999985 56788778888877653110 011224899999999995 389999999832 2359
Q ss_pred eeeeEEEe
Q 008066 146 VYGALIIH 153 (579)
Q Consensus 146 l~G~liV~ 153 (579)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 42
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.2e-06 Score=94.97 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=137.6
Q ss_pred eeEEEEcCCCC-C----CeEEEecCCEEEEEEEeCCC-CCceEEeCCccccCCCCCCCC---Cc-ccccccCCCCeEEEE
Q 008066 54 HNTITVNGMYP-G----PTLEVNNGDTLVVKVTNKAR-YNVTIHWHGVRQMRTAWADGP---EF-VTQCPIRPGMSYTYR 123 (579)
Q Consensus 54 ~~~~~~ng~~p-g----P~i~v~~Gd~v~v~l~N~l~-~~~siH~HG~~~~~~~~~DGv---~~-~~~~~i~PG~~~~y~ 123 (579)
-...+|||+-. . +++.+++|++.++|+.|..- ....+..-|...... ..||. |. ....-|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvV-e~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVV-EVDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEE-EecceEEeeeeeceEEEcCCcEEEEE
Confidence 46789999851 1 68999999999999999853 333333334333322 26773 21 234569999999999
Q ss_pred EEecCCCcceeeeeccccccc----ceeeeEEEeCCCC-----CCCC----CCC-CCCceeEEeee---eccCC------
Q 008066 124 FTIQGQEGTLWWHAHSSWLRA----TVYGALIIHPKEG-----SSYP----FPK-PKRETPILLGE---WWDAN------ 180 (579)
Q Consensus 124 f~~~~~~Gt~~yH~h~~~~~~----Gl~G~liV~~~~~-----~~~~----~~~-~~~e~~l~~~d---~~~~~------ 180 (579)
.++++.++.||.-...-.+.. =+.+..+++-.++ ...+ .+. .+....+-+.. ++.+.
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 999878889988877543321 2222222222221 0000 000 00000000000 00000
Q ss_pred hHHHHHHh---------hhCCC-CCCCCceEEEcCCCC----------------CC-----CCCCC----------CCee
Q 008066 181 PIDVVRQA---------TRTGA-APNISDAYTINGQPG----------------DL-----YNCSS----------QDTV 219 (579)
Q Consensus 181 ~~~~~~~~---------~~~g~-~~~~~~~~liNG~~~----------------~~-----~~~~~----------~~~~ 219 (579)
........ ..... ..+......||+... +. +.|.. ..+-
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 00000000 00000 000112334444421 00 11111 2234
Q ss_pred eEEEecCCEEEEEEeecCCC--ccEEEEEcCCeeEEEeeCCcc-------------cCceEEeEEEECcccEEEEEEEcC
Q 008066 220 VVPIDSGETNLLRVINSGLN--QPLFFTIANHQFTVVGADASY-------------LKPFTTSVIMLGPGQTTDVLIKGD 284 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~--~~~~~~l~gh~~~via~DG~~-------------~~p~~~d~l~l~pG~R~dv~v~~~ 284 (579)
.+.++-+..+.+=|-|.+.. ..+++|||||.|.|++.+... ..|...+|+.|.||.-.-|.+.+|
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 57888889999999998833 445779999999999993322 246678999999999999999999
Q ss_pred CCCcceEEEEEecc
Q 008066 285 QPPSRYYLAARAYA 298 (579)
Q Consensus 285 ~~~g~~~l~~~~~~ 298 (579)
+||-|.||||...
T Consensus 511 -NPG~W~~HCHie~ 523 (563)
T KOG1263|consen 511 -NPGVWLMHCHIED 523 (563)
T ss_pred -CCcEEEEEEecHH
Confidence 7999999999643
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.54 E-value=2.3e-07 Score=78.66 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=46.3
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeecccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRAT 145 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~G 145 (579)
..|+++.|+.|+|+++|....++.+...++... ..|.||++.++.|+. .++|+|=|+|..++.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~~--- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHPN--- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-T---
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCCc---
Confidence 599999999999999999888877766664322 359999999999974 899999999997762
Q ss_pred eeeeEEE
Q 008066 146 VYGALII 152 (579)
Q Consensus 146 l~G~liV 152 (579)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6777765
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.24 E-value=5.7e-06 Score=69.37 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcc--cccccCCCCeEEEEEEecCCCcceeeeecccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFV--TQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLR 143 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~--~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~ 143 (579)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|+ .+|+|.|+|. ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC-Cccc
Confidence 68999999985 56688777888877653221110 0000011 2235789999999984 4999999998 2233
Q ss_pred cceeeeEEEe
Q 008066 144 ATVYGALIIH 153 (579)
Q Consensus 144 ~Gl~G~liV~ 153 (579)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 5999999984
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.18 E-value=7.4e-06 Score=73.68 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=60.2
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCC---C--cEEE
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPV---G--GWAV 528 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~v~ 528 (579)
.+.+.++.|++|++++.|.. ....|.|-||.+.-..-. .+..+. .+.....-.+|+ | ++..
T Consensus 51 ~P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~~------~p~mdG------~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 51 NPTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYPY------MPGMDG------LGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCcccc------ccccCC------CCccccCcccCCCCCCccceeE
Confidence 36789999999999999964 235677766643211000 000000 011112222332 2 2467
Q ss_pred EEEEecCceeEEEEecchhhHHccceEEEEEe
Q 008066 529 IRFVADNPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 529 irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
++|+++.+|.+.||||+..|...||.+.+.|+
T Consensus 117 ~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 88888899999999999999999999999873
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.17 E-value=9.4e-06 Score=65.65 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=53.1
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeecccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRAT 145 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~G 145 (579)
+.|++++||+| +++|....++++++..-......+. + ..+.||+++++.| +++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~-~------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALK-G------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCcccccc-c------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 78999999996 5689888888888764221111111 1 1367888888877 57999999998765 5
Q ss_pred eeeeEEEe
Q 008066 146 VYGALIIH 153 (579)
Q Consensus 146 l~G~liV~ 153 (579)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999885
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.06 E-value=1.7e-05 Score=66.49 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=54.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCC-CCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWAD-GPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA 144 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~D-Gv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~ 144 (579)
..|++++||+| ++.|....++++.+---........+ ..+.-....+.||+++++.|+ ++|+|.|+|-. ...+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 79999999985 57777667777766331100000000 000002235889999999995 89999999983 3345
Q ss_pred ceeeeEEEe
Q 008066 145 TVYGALIIH 153 (579)
Q Consensus 145 Gl~G~liV~ 153 (579)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999985
No 48
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.05 E-value=2.1e-05 Score=72.23 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=78.9
Q ss_pred CceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEE
Q 008066 453 GTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFV 532 (579)
Q Consensus 453 ~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ 532 (579)
...++.++.|++++|.|.|.+ ....+.|++.||+|+|++.... ...|...|++.|.+|+.+-|-++
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEE
T ss_pred ccceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEE
Confidence 356889999999999999976 3568999999999999998421 22377889999999999999999
Q ss_pred ecC-ceeEEEEe----cchhhHHccceEEEEEecC
Q 008066 533 ADN-PGVWLMHC----HLDVHITWGLAMAFLVENG 562 (579)
Q Consensus 533 adn-pG~wl~HC----Hi~~H~~~GM~~~~~V~~~ 562 (579)
++. +|.|.++| +...+...|+...+++.++
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 977 99999999 6677888999888877653
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=3.8e-05 Score=83.13 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=68.5
Q ss_pred eecCceee--eEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEE
Q 008066 47 VKRLCKTH--NTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRF 124 (579)
Q Consensus 47 ~~~~g~~~--~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f 124 (579)
+.++|..+ ++.+..-.+--+.|+|++||+|+++|+|.....=.+ ||+.+... |+ ..-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEEE
Confidence 45666443 445555556446899999999999999964321122 66555432 11 12478999999999
Q ss_pred EecCCCcceeeeeccc--ccccceeeeEEEeCC
Q 008066 125 TIQGQEGTLWWHAHSS--WLRATVYGALIIHPK 155 (579)
Q Consensus 125 ~~~~~~Gt~~yH~h~~--~~~~Gl~G~liV~~~ 155 (579)
++ +++|+|||||..- ..-.+|.|.|+|+|+
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 86 9999999999862 222399999999874
No 50
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.60 E-value=0.00025 Score=59.38 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|++|+|+ |.+ ...|-+.++...+..-.. ........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK--------------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh--------------hhcccccccccccCCCCEEEEEeCC-
Confidence 45799999999987 422 457877765432211000 0011233467888999998887775
Q ss_pred CceeEEEEecchhhHHccceEEEEEe
Q 008066 535 NPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 535 npG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
||.|.|||- .|..+||.+.+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.57 E-value=0.00066 Score=62.70 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=73.0
Q ss_pred eEEEEcCCCCC-CeEEEecCCEEEEEEEeCCCCCceEEeC--CccccC--CCCCCCCC----c-----ccccccCCCCeE
Q 008066 55 NTITVNGMYPG-PTLEVNNGDTLVVKVTNKARYNVTIHWH--GVRQMR--TAWADGPE----F-----VTQCPIRPGMSY 120 (579)
Q Consensus 55 ~~~~~ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~siH~H--G~~~~~--~~~~DGv~----~-----~~~~~i~PG~~~ 120 (579)
+.+-|||..-| ++|-+-.|-+|.|+|+|....+|++-.- +-.++. .-..||-. | .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47788998877 8999999999999999987665553221 111111 11245511 1 123468899999
Q ss_pred EEEEEecCCCcceeeeeccccccc-ceeeeEEEeCCCC
Q 008066 121 TYRFTIQGQEGTLWWHAHSSWLRA-TVYGALIIHPKEG 157 (579)
Q Consensus 121 ~y~f~~~~~~Gt~~yH~h~~~~~~-Gl~G~liV~~~~~ 157 (579)
.-.|. +-++|.|||-|-..++.+ ||++-|+|...-.
T Consensus 154 ~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 87774 468999999999988775 9999999987643
No 52
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.55 E-value=0.00076 Score=60.89 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=70.0
Q ss_pred eEEEEcCCCCC-CeEEEecCCEEEEEEEeCCCCCceEEeCCccc--c--CCCCCCCC----Cccc-----ccccCCCCeE
Q 008066 55 NTITVNGMYPG-PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQ--M--RTAWADGP----EFVT-----QCPIRPGMSY 120 (579)
Q Consensus 55 ~~~~~ng~~pg-P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~--~--~~~~~DGv----~~~~-----~~~i~PG~~~ 120 (579)
+.+-|||+..| ++|-+-.|=+|.|+|.|....+|++-.-=-.. + ..-..||. +|.+ -..|.+|++.
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 34678999888 89999999999999999987776654411100 0 00113551 1211 2346788885
Q ss_pred EEEEEecCCCcceeeeecccccc-cceeeeEEEeCCC
Q 008066 121 TYRFTIQGQEGTLWWHAHSSWLR-ATVYGALIIHPKE 156 (579)
Q Consensus 121 ~y~f~~~~~~Gt~~yH~h~~~~~-~Gl~G~liV~~~~ 156 (579)
.-.|+ +-++|+|||-|-.-++. +||+|.+||-..-
T Consensus 153 sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 153 SGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred EEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 55554 57999999999987666 4999999997654
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.53 E-value=0.00043 Score=59.93 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=54.1
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc-
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA- 144 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~- 144 (579)
-.|++++||+ |++.|.....++++.-+... . +|. ......+|+++++.| +.+|+|-|+|-.| ++
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~---~--~g~---~~~~~~~~~s~~~Tf---e~~G~Y~Y~C~PH--~~~ 118 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD---P--EGS---GTLKAGINESFTHTF---ETPGEYTYYCTPH--PGM 118 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC---c--ccc---cccccCCCcceEEEe---cccceEEEEeccC--CCC
Confidence 4999999999 77899988888887766441 1 222 112344557777777 4699999999765 43
Q ss_pred ceeeeEEEeC
Q 008066 145 TVYGALIIHP 154 (579)
Q Consensus 145 Gl~G~liV~~ 154 (579)
||.|.|+|.+
T Consensus 119 gM~G~IvV~~ 128 (128)
T COG3794 119 GMKGKIVVGE 128 (128)
T ss_pred CcEEEEEeCC
Confidence 9999999964
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.36 E-value=0.0012 Score=56.58 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=48.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEe-CCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHW-HGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA 144 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~-HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~ 144 (579)
..|+|++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.| +++|+|-|+|-.| ...
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH-~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH-YGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC-ccC
Confidence 689999999966555543 455544 2211 122211 1124567666666 5799999999843 234
Q ss_pred ceeeeEEEeCCC
Q 008066 145 TVYGALIIHPKE 156 (579)
Q Consensus 145 Gl~G~liV~~~~ 156 (579)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998753
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.27 E-value=0.0014 Score=57.29 Aligned_cols=60 Identities=23% Similarity=0.485 Sum_probs=48.6
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|+.|+|++.|.+ ...|.+-++++.+ ...+++|....++|.++
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred CEEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECC
Confidence 4578999999999999854 5677776666421 34678899999999999
Q ss_pred CceeEEEEecc
Q 008066 535 NPGVWLMHCHL 545 (579)
Q Consensus 535 npG~wl~HCHi 545 (579)
.||.|-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999964
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.19 E-value=0.0022 Score=54.92 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=50.0
Q ss_pred CeEEEecCCEEEEEEEeCC-CCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKA-RYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA 144 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l-~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~ 144 (579)
..|+|++||+|+ ++|+. ..++++..-+ ... .| .......+|+++++.| .++|+|-|+|-.| ...
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf---~~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTF---EEPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEe---cCCcEEEEEccCC-CCC
Confidence 689999999955 77554 4667765421 011 11 0112357899999999 4799999999865 223
Q ss_pred ceeeeEEEe
Q 008066 145 TVYGALIIH 153 (579)
Q Consensus 145 Gl~G~liV~ 153 (579)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999984
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.15 E-value=0.0033 Score=52.60 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=55.4
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|++|.|+..+ ...|.+.+=- . ......+.... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~~~-------~---~~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVFVA-------D---GMPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEEET-------T---SSHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEEec-------c---ccccccccccc----CccccceecCCCCEEEEEeC--
Confidence 46799999999998764 3466554422 1 11000000000 11115777889988888877
Q ss_pred CceeEEEEecchhhHHccceEEEEEe
Q 008066 535 NPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 535 npG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
.+|.|.|+|- . |..+||-+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 8999999999 5 9999999999984
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.64 E-value=0.0079 Score=65.55 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=58.9
Q ss_pred eEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 008066 456 LYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADN 535 (579)
Q Consensus 456 ~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 535 (579)
.+.++.|+.|++++.|.....+..|.|-+-++.. -..+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 4689999999999999643346788888755432 235668889999999999
Q ss_pred ceeEEEEecchhhHH-ccceEEEEEec
Q 008066 536 PGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 536 pG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
||.|.+||...-|.. .+|...+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 999999998733221 38888888754
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.48 E-value=0.012 Score=49.65 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=42.7
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|+.+++++.|.+ ...|-|.+-+. .-...+++|+...+.|.++
T Consensus 35 ~~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~----------------------------~~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNND---SRPHEFVIPDL----------------------------GISKVLPPGETATVTFTPL 83 (104)
T ss_dssp -EEEEETTCEEEEEEEE-S---SS-EEEEEGGG----------------------------TEEEEE-TT-EEEEEEEE-
T ss_pred CEEEEcCCCeEEEEEEECC---CCcEEEEECCC----------------------------ceEEEECCCCEEEEEEcCC
Confidence 4679999999999999964 33454444441 1236889999999999999
Q ss_pred CceeEEEEecchhhHHccc
Q 008066 535 NPGVWLMHCHLDVHITWGL 553 (579)
Q Consensus 535 npG~wl~HCHi~~H~~~GM 553 (579)
.||.|-|+|-+-.+ +.|.
T Consensus 84 ~~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 84 KPGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp S-EEEEEB-SSS-T-TB--
T ss_pred CCEEEEEEcCCCCc-ceec
Confidence 99999999996554 3444
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.82 E-value=0.043 Score=47.53 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=51.5
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|++|+|+ |. +...|.+.+.+... .......+.+|....+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~---~~~~H~v~~~~~~~------------------------~~~~~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NN---KLAPHNAVFDGAKE------------------------LSHKDLAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--EC---CCCCceEEecCCcc------------------------ccccccccCCCCEEEEEecC-
Confidence 45789999999986 42 24578776542210 00112356788887777775
Q ss_pred CceeEEEEecchhhHHccceEEEEEe
Q 008066 535 NPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 535 npG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
||.|.|+|= .|...||-+.+.|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999873
No 61
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.07 E-value=0.081 Score=47.01 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=63.3
Q ss_pred eEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 008066 456 LYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADN 535 (579)
Q Consensus 456 ~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 535 (579)
...++-|++++.++.|.+ ...|=|=+- ++.... +.+.-. ....-..-....++.|.||....+-+.+.+
T Consensus 64 ~~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~--~~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 64 SFEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNL--EHVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFTG 132 (158)
T ss_pred cccccCCcEEeeeecCcc---cceEEEecc---Cccccc--hhHHHh---hhCCccccCCcceeEeCCCCcEEEEEEecC
Confidence 467889999999999965 334433332 111110 000000 000001123346899999999999999999
Q ss_pred ceeEEEEecchhhHHccceEEEEEe
Q 008066 536 PGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 536 pG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
+|.+-+-|-|.+|-++||-+-+.|.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeC
Confidence 9999999999999999999999874
No 62
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.01 E-value=0.21 Score=51.71 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=52.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeC-CccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccccccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWH-GVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRA 144 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~H-G~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~ 144 (579)
..+.+..|+ +++.++|....++-.-.- |..+.. ....|.||.+.++.+++ .+|+|-|+|-. ..
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv~----------e~EnIaPG~s~~l~~~L--~pGtY~~~C~~---~~ 107 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVVE----------ERENIAPGFSQKMTANL--QPGEYDMTCGL---LT 107 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEeeccccccc----------cccccCCCCceEEEEec--CCceEEeecCc---CC
Confidence 689999996 899999998766442211 110000 12369999999988866 69999999943 24
Q ss_pred ceeeeEEEeCCC
Q 008066 145 TVYGALIIHPKE 156 (579)
Q Consensus 145 Gl~G~liV~~~~ 156 (579)
.+.|.|+|....
T Consensus 108 ~~~g~l~Vtg~~ 119 (375)
T PRK10378 108 NPKGKLIVKGEA 119 (375)
T ss_pred CCCceEEEeCCC
Confidence 458899998653
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.95 E-value=0.17 Score=43.52 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCcEEEEEEEecCceeEEEEecchhhHHccceEEEEEecCc
Q 008066 523 VGGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGV 563 (579)
Q Consensus 523 ~~g~v~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~ 563 (579)
++....+.| +.+|.+-|+|= .|...||-+.+.|.++.
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 455544444 68999999998 99999999999998753
No 64
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.21 E-value=0.25 Score=42.42 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred CeEEEec-CCEEEEEEEeCCCCCceEEeCCccccCCCCC-----C----C-----CCc------ccccccCCCCeEEEEE
Q 008066 66 PTLEVNN-GDTLVVKVTNKARYNVTIHWHGVRQMRTAWA-----D----G-----PEF------VTQCPIRPGMSYTYRF 124 (579)
Q Consensus 66 P~i~v~~-Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~-----D----G-----v~~------~~~~~i~PG~~~~y~f 124 (579)
..|.|.. |.+|+|+|+|....+-..-.|-+-......+ | | +|. ..-.-|.|||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 5899998 5899999999865443333332211111001 1 1 111 0122389999999999
Q ss_pred EecC-CCcc-eeeeecccccccceeeeEE
Q 008066 125 TIQG-QEGT-LWWHAHSSWLRATVYGALI 151 (579)
Q Consensus 125 ~~~~-~~Gt-~~yH~h~~~~~~Gl~G~li 151 (579)
+++. ++|. |-|-|-.-+..+.|.|.|.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9743 6786 9999999888888988775
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.55 Score=41.82 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCC--ce---------EEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCc
Q 008066 63 YPGPTLEVNNGDTLVVKVTNKARYN--VT---------IHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEG 131 (579)
Q Consensus 63 ~pgP~i~v~~Gd~v~v~l~N~l~~~--~s---------iH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~G 131 (579)
+++-.+.++.|++++..+.|...-- .+ .--|..... .+++- ......++||++-+..|.. .++|
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred cCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCCc
Confidence 5667899999999999999986311 11 111222211 13331 1233469999999999986 7899
Q ss_pred ceeeeeccccccc-ceeeeEEEeC
Q 008066 132 TLWWHAHSSWLRA-TVYGALIIHP 154 (579)
Q Consensus 132 t~~yH~h~~~~~~-Gl~G~liV~~ 154 (579)
.|-+-|-..+++. ||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999996 9999998864
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.11 E-value=0.4 Score=41.56 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=49.3
Q ss_pred CCeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeecc--ccc
Q 008066 65 GPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHS--SWL 142 (579)
Q Consensus 65 gP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~--~~~ 142 (579)
.+.|.+..|+.|++++++.. .-+++...++.. +.-+.||+.....|+. +++|+|+..|.. +..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VIHSFWIPELGI-------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S-EEEEETTCTE-------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcCC-ccccccccccCc-------------ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 37999999999999999963 333333222211 2347899999999986 899999999984 211
Q ss_pred ccceeeeEEE
Q 008066 143 RATVYGALII 152 (579)
Q Consensus 143 ~~Gl~G~liV 152 (579)
-+.|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 2367676665
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.06 E-value=1.7 Score=37.67 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=46.5
Q ss_pred eeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEecc
Q 008066 219 VVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYA 298 (579)
Q Consensus 219 ~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~ 298 (579)
..+.+++|+.++|+|-+.. -.|.|.|.+..+.+ .+-||+.-.+.++++ +||.|.+.|.-+.
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~-~~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIKM----------------DAIPGRTNSVTFTPD-KPGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEEE----------------EEBTTCEEEEEEEES-SSEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCccc----------------ccccccceeeeeeec-cCCcEEEcCcccc
Confidence 5699999999999998844 45567776654333 344888889999998 7999999998654
Q ss_pred C
Q 008066 299 S 299 (579)
Q Consensus 299 ~ 299 (579)
.
T Consensus 107 G 107 (120)
T PF00116_consen 107 G 107 (120)
T ss_dssp S
T ss_pred C
Confidence 3
No 68
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.31 E-value=1.7 Score=40.56 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=60.9
Q ss_pred CceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCC---CCCCCC--CCCCCCcceeEEeCCCcEE
Q 008066 453 GTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPK---TDTSKF--NLVDPPLRNTVGVPVGGWA 527 (579)
Q Consensus 453 ~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~---~~~~~~--~~~~p~~rDTv~vp~~g~v 527 (579)
+...+.++-|-.|.+++.|.+ ...| .|-|+..+....... .|.+-. -...+.--..=-+++|...
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 345678999999999999954 4455 566665443211110 011000 0000100001123355555
Q ss_pred EEEEEecCceeEEEEecchhhHHccceEEEEEecCc
Q 008066 528 VIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGV 563 (579)
Q Consensus 528 ~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~~ 563 (579)
..-|..--+|.|.+=|=|.-|...||-..|.|-+..
T Consensus 154 ~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 154 SGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred eEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 555656679999999999999999999999986543
No 69
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.30 E-value=0.94 Score=36.32 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=45.0
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|++|.|+ |. +...|-.+.+.-.+ +..+ +. ...+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~---d~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NR---EAMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--EC---CCCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECC
Confidence 45789999999994 42 24578887643211 0000 01 11234555444 4557
Q ss_pred CceeEEEEecchhhHHccceEEEEEe
Q 008066 535 NPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 535 npG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
.||.|.|||=+ |- +|-+.++|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999986 54 488888763
No 70
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.05 E-value=1.3 Score=38.04 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=48.0
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
..+.++.|++|.|+-+. +...|-.. +.+.+.|+. ......+|....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~----d~~~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTG----EGGGHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECC----CCCCEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--c
Confidence 45799999999997533 12345432 222222221 111234566666666 6
Q ss_pred CceeEEEEecchhhHHccceEEEEEe
Q 008066 535 NPGVWLMHCHLDVHITWGLAMAFLVE 560 (579)
Q Consensus 535 npG~wl~HCHi~~H~~~GM~~~~~V~ 560 (579)
.||.|-|+|= .|...||-+.+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 7999999998 89999999999873
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.40 E-value=2 Score=40.86 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=56.1
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeecc--cccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHS--SWLR 143 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~--~~~~ 143 (579)
..|.+..|+.|++++++.. .+ ||..++.- |+ +.-+.||..-+..|+. +++|+|...|.. +..-
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999864 22 66655432 21 2346789999999975 899999999985 2222
Q ss_pred cceeeeEEEeCCC
Q 008066 144 ATVYGALIIHPKE 156 (579)
Q Consensus 144 ~Gl~G~liV~~~~ 156 (579)
+.|.+.++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 4788999988764
No 72
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=88.22 E-value=4.5 Score=37.10 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=59.3
Q ss_pred CceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCC-CC--CCCCCCCCC--CCCCcceeEEeCCCcEE
Q 008066 453 GTKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNF-NP--KTDTSKFNL--VDPPLRNTVGVPVGGWA 527 (579)
Q Consensus 453 ~~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~-~~--~~~~~~~~~--~~p~~rDTv~vp~~g~v 527 (579)
+...+.++.|-.|.++|.|.. ..+|. +-++..+.... .+ ..+.+..+. ..+..-..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pHn-------l~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPHN-------LKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCcc-------EEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 446788999999999999954 44544 44554432110 00 001110000 00000001112344555
Q ss_pred EEEEEecCceeEEEEecchhhHHccceEEEEEecC
Q 008066 528 VIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENG 562 (579)
Q Consensus 528 ~irf~adnpG~wl~HCHi~~H~~~GM~~~~~V~~~ 562 (579)
..-|..--||.+-+=|-+.-|.+.||-..+.|-..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 56677778999999999999999999999988654
No 73
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=86.72 E-value=5 Score=34.62 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=51.7
Q ss_pred eeEEEecC-CEEEEEEeecCCCc----cEEEEEc-CCeeEEEee-------CCcccCc----eEEeEEEECcccEEEEEE
Q 008066 219 VVVPIDSG-ETNLLRVINSGLNQ----PLFFTIA-NHQFTVVGA-------DASYLKP----FTTSVIMLGPGQTTDVLI 281 (579)
Q Consensus 219 ~~~~v~~G-~~~rlRliN~g~~~----~~~~~l~-gh~~~via~-------DG~~~~p----~~~d~l~l~pG~R~dv~v 281 (579)
..++|+++ +.+.+.|-|.|... .|++-|- .-.++-++. |-+++.+ +...|=+|++||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 56899984 88999999998543 3333332 112222222 3345532 245677999999999999
Q ss_pred EcCC-CCc-ceEEEEEe
Q 008066 282 KGDQ-PPS-RYYLAARA 296 (579)
Q Consensus 282 ~~~~-~~g-~~~l~~~~ 296 (579)
+++. .+| +|.+.|..
T Consensus 96 ~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSF 112 (125)
T ss_pred ECCCCCCCCcceEEEcC
Confidence 9874 456 59999984
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.88 E-value=4.3 Score=38.57 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=55.0
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.|++.+.+. +..|.|.+-+... -..+-||....+.|.+
T Consensus 116 ~~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~~----------------------------k~da~PG~~~~~~~~~ 163 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK----DVIHSFWVPELGG----------------------------KIDAIPGQYNALWFNA 163 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC----chhhcccccccCc----------------------------eEEecCCcEEEEEEEe
Confidence 3467899999999999984 3456655533221 1234477888899999
Q ss_pred cCceeEEEEecc---hhhHHccceEEEEEecC
Q 008066 534 DNPGVWLMHCHL---DVHITWGLAMAFLVENG 562 (579)
Q Consensus 534 dnpG~wl~HCHi---~~H~~~GM~~~~~V~~~ 562 (579)
+.||.+...|-. ..| ..|...++|.+.
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 999999999998 555 678778877653
No 75
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=85.52 E-value=4 Score=35.57 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=47.1
Q ss_pred eEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 008066 456 LYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVADN 535 (579)
Q Consensus 456 ~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~adn 535 (579)
.++++.|++|+|+-.. ...|-.+.=+-. .|...+++...++.....-|..
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~Tfe~-- 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHTFET-- 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEEecc--
Confidence 4689999999997432 235654432221 1112233333344555555554
Q ss_pred ceeEEEEecchhhHHccceEEEEEec
Q 008066 536 PGVWLMHCHLDVHITWGLAMAFLVEN 561 (579)
Q Consensus 536 pG~wl~HCHi~~H~~~GM~~~~~V~~ 561 (579)
||.|.|.|= .|...||-+.+.|.+
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999994 699999999998853
No 76
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.63 E-value=9.9 Score=30.40 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=34.5
Q ss_pred EEEEEeecCCCccEEEEEc-CCee--EEEeeCCccc----C----ceEEeEEEECcccEEEEEEEcCCC---CcceEEEE
Q 008066 229 NLLRVINSGLNQPLFFTIA-NHQF--TVVGADASYL----K----PFTTSVIMLGPGQTTDVLIKGDQP---PSRYYLAA 294 (579)
Q Consensus 229 ~rlRliN~g~~~~~~~~l~-gh~~--~via~DG~~~----~----p~~~d~l~l~pG~R~dv~v~~~~~---~g~~~l~~ 294 (579)
+.|.+.|.+ ...+.|.+. |+.+ .|...+|..+ + -+......|.|||...+-.+.+.. ||.|.+.+
T Consensus 4 ~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 566777777 333455554 4443 3333455544 1 133568899999999999998864 68998753
No 77
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.35 E-value=2.8 Score=33.55 Aligned_cols=58 Identities=28% Similarity=0.396 Sum_probs=30.8
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCc---ccccccCCCCeEEEEEEecCC---Ccceee
Q 008066 67 TLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEF---VTQCPIRPGMSYTYRFTIQGQ---EGTLWW 135 (579)
Q Consensus 67 ~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~---~~~~~i~PG~~~~y~f~~~~~---~Gt~~y 135 (579)
+|+...|++..+.|.|..... + =.|++|-.. +....|+||++.+|+++.+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 566666666666666543221 1 135777432 345679999999999998443 688854
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=81.33 E-value=80 Score=33.68 Aligned_cols=176 Identities=22% Similarity=0.315 Sum_probs=100.7
Q ss_pred EEEecCCE--EEEEEEeCCC--CCceEEeCCcccc-CCCCCCCCCcccccccCCCCeEEEEEEe----cCCCcceeeeec
Q 008066 68 LEVNNGDT--LVVKVTNKAR--YNVTIHWHGVRQM-RTAWADGPEFVTQCPIRPGMSYTYRFTI----QGQEGTLWWHAH 138 (579)
Q Consensus 68 i~v~~Gd~--v~v~l~N~l~--~~~siH~HG~~~~-~~~~~DGv~~~~~~~i~PG~~~~y~f~~----~~~~Gt~~yH~h 138 (579)
+.+.++++ +.|++.|.-. +...+-.-|+.-. ...+.+|--.++...+.||++.+....+ +..+|+|
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y----- 352 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY----- 352 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce-----
Confidence 55566666 6677888764 4455555554311 1112366556788889999999999887 2224444
Q ss_pred ccccccceeeeEEEeCCCCCCCCCCCCCCceeEEeeeeccCChHHHHHHhhhCCCCCCCCceEEEcCCCCCCCCCCCCCe
Q 008066 139 SSWLRATVYGALIIHPKEGSSYPFPKPKRETPILLGEWWDANPIDVVRQATRTGAAPNISDAYTINGQPGDLYNCSSQDT 218 (579)
Q Consensus 139 ~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~ 218 (579)
-..|+-...+ ...+|.++.+.- .|.. ....-+-||.
T Consensus 353 ---------nv~I~A~s~s------~v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------ 388 (513)
T COG1470 353 ---------NVTITASSSS------GVTRELPLKIKN---------------TGSY--NELVKLDNGP------------ 388 (513)
T ss_pred ---------eEEEEEeccc------cceeeeeEEEEe---------------cccc--ceeEEccCCc------------
Confidence 4444433322 113455555432 1110 1122344554
Q ss_pred eeEEEecCC--EEEEEEeecCCC--ccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccE--EEEEEEcCC--CCcce
Q 008066 219 VVVPIDSGE--TNLLRVINSGLN--QPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQT--TDVLIKGDQ--PPSRY 290 (579)
Q Consensus 219 ~~~~v~~G~--~~rlRliN~g~~--~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R--~dv~v~~~~--~~g~~ 290 (579)
..+++.+|+ .+++++-|.|+. ..+.+.+++-+=+-+.+|+..+ +. |.||+| +++-++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCcE
Confidence 348888885 689999999944 3345666665557777777633 22 345554 445555553 46889
Q ss_pred EEEEEeccC
Q 008066 291 YLAARAYAS 299 (579)
Q Consensus 291 ~l~~~~~~~ 299 (579)
.+....-.|
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 988775443
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.84 E-value=11 Score=37.02 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=56.6
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeecc--cccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHS--SWLR 143 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~--~~~~ 143 (579)
..|.+..|.+|+++++=. +.- ||+..+.. | .+.-..||...++.++. +++|+|.-+|+. +..-
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l----~----~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQL----G----GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCC----C----ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998866 233 44444432 1 12346789999999976 999999999985 2222
Q ss_pred cceeeeEEEeCCCC
Q 008066 144 ATVYGALIIHPKEG 157 (579)
Q Consensus 144 ~Gl~G~liV~~~~~ 157 (579)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 48999999998864
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=70.71 E-value=6.2 Score=41.33 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=50.7
Q ss_pred CeEEEecCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeeeccc--ccc
Q 008066 66 PTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSS--WLR 143 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~--~~~ 143 (579)
-++.|++||.|++.++|-......+ ||.-.+. -|+. ..+.|-++-.|.|.. +.+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 4788999999999999886544444 3332221 1221 248888999999965 8999999997532 112
Q ss_pred cceeeeEEEe
Q 008066 144 ATVYGALIIH 153 (579)
Q Consensus 144 ~Gl~G~liV~ 153 (579)
.-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 2455666665
No 81
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=70.50 E-value=21 Score=35.02 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=53.3
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.|++.+... +..|.|.+-+-.+ -+.+-||-...+.+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~----------------------------k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA----DVIHSFWIPQLGG----------------------------KIDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEec----hhceeEEecCCCc----------------------------eeeecCCceEEEEEec
Confidence 4567899999999999874 4456655544433 2334466777789999
Q ss_pred cCceeEEEEecchhhHHc-cceEEEEEec
Q 008066 534 DNPGVWLMHCHLDVHITW-GLAMAFLVEN 561 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~~-GM~~~~~V~~ 561 (579)
+.||.|-.+|+..-=... .|-..+.|.+
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs 212 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVS 212 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEc
Confidence 999999999998775543 4444555544
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=66.88 E-value=40 Score=27.16 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCCeEEEe---cCCEEEEEEEeCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCc
Q 008066 64 PGPTLEVN---NGDTLVVKVTNKARYNVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEG 131 (579)
Q Consensus 64 pgP~i~v~---~Gd~v~v~l~N~l~~~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~G 131 (579)
+.|.++++ ....|+|+|.|....+..+........ .+. -.+..|+||++.+..|.+....|
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~--~~~~~v~ag~~~~~~w~l~~s~g 70 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGG--PWTYTVAAGQTVSLTWPLAASGG 70 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCC--CEEEEECCCCEEEEEEeecCCCC
Confidence 34666655 234899999999877777666542211 111 13457999999999998733334
No 83
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=66.51 E-value=47 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.2
Q ss_pred ccccCCCCeEEEEEEe
Q 008066 111 QCPIRPGMSYTYRFTI 126 (579)
Q Consensus 111 ~~~i~PG~~~~y~f~~ 126 (579)
..||+|||+.+...++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4589999999999987
No 84
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=61.64 E-value=37 Score=34.98 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=33.4
Q ss_pred eeeeEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCCceE--------EeCCccccCC--CCC-CCCC----ccc-ccccC
Q 008066 52 KTHNTITVNGMYPGPTLEVNNGDTLVVKVTNKARYNVTI--------HWHGVRQMRT--AWA-DGPE----FVT-QCPIR 115 (579)
Q Consensus 52 ~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~~~si--------H~HG~~~~~~--~~~-DGv~----~~~-~~~i~ 115 (579)
+..++...+=++||-++++ .++++|+.+.+..| +|-.-.+... .+- |-++ .++ ..||+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 3344443333578888854 48888888765432 3322221111 000 1111 133 34899
Q ss_pred CCCeEEEEEEe
Q 008066 116 PGMSYTYRFTI 126 (579)
Q Consensus 116 PG~~~~y~f~~ 126 (579)
|||+.+...++
T Consensus 323 PGETrtl~V~a 333 (381)
T PF04744_consen 323 PGETRTLTVEA 333 (381)
T ss_dssp TT-EEEEEEEE
T ss_pred CCceEEEEEEe
Confidence 99999999987
No 85
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=60.42 E-value=13 Score=29.12 Aligned_cols=60 Identities=25% Similarity=0.405 Sum_probs=26.4
Q ss_pred ecCCE--EEEEEEeCCCCC---ceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEe----cCCCccee
Q 008066 71 NNGDT--LVVKVTNKARYN---VTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTI----QGQEGTLW 134 (579)
Q Consensus 71 ~~Gd~--v~v~l~N~l~~~---~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~----~~~~Gt~~ 134 (579)
++|+. +.++|.|....+ ..+-+- .+.+|.......+-..|+||++.+..|++ +-.+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 45555 456777876543 222221 13455522212222369999999999988 22357753
No 86
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=60.20 E-value=11 Score=32.06 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=27.1
Q ss_pred EEEEeCCCCC---ceEEeCCccccCC---CCCCCCCcccccccCCCCeEEEEE
Q 008066 78 VKVTNKARYN---VTIHWHGVRQMRT---AWADGPEFVTQCPIRPGMSYTYRF 124 (579)
Q Consensus 78 v~l~N~l~~~---~siH~HG~~~~~~---~~~DGv~~~~~~~i~PG~~~~y~f 124 (579)
|++.|....+ .+=|||=-...+. -.-+||-| .|..|+||++|+|.=
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtS 85 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTS 85 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcC
Confidence 6667776654 4458873222111 00234433 477899999999975
No 87
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=49.68 E-value=61 Score=24.60 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=36.5
Q ss_pred eeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEE
Q 008066 219 VVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAAR 295 (579)
Q Consensus 219 ~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~ 295 (579)
..+++++|+++++.+-+.+.. ..+.+...+|..+....... -..+..-.+.+.+. .+|+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 468999999999998777652 22455555554331100000 01122333444555 6799998764
No 88
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=48.32 E-value=74 Score=25.92 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=41.2
Q ss_pred EEecCCEEEEEEe--ecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEE-EECcccEEEEEEEcCCC--CcceEEEEEe
Q 008066 222 PIDSGETNLLRVI--NSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVI-MLGPGQTTDVLIKGDQP--PSRYYLAARA 296 (579)
Q Consensus 222 ~v~~G~~~rlRli--N~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l-~l~pG~R~dv~v~~~~~--~g~~~l~~~~ 296 (579)
.-+|||++.+|++ +... ......-....+++..-+|..+ ..... .......++..+..+.. .|.|.|....
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 3689999999999 6652 1111111112356666666544 22223 34677888888888764 4999999885
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=48.26 E-value=1.4e+02 Score=23.87 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=41.8
Q ss_pred EEecCCEE--EEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEE-EECcccEEEEEEEcCC-CCcceEEEEEec
Q 008066 222 PIDSGETN--LLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVI-MLGPGQTTDVLIKGDQ-PPSRYYLAARAY 297 (579)
Q Consensus 222 ~v~~G~~~--rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l-~l~pG~R~dv~v~~~~-~~g~~~l~~~~~ 297 (579)
.+..|+.+ .+.+.|.|....-.+.+. +..||..+ ....+ .|.+|+...+.+.... .+|.|.|.....
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 55667754 578899986655444433 34566544 44455 7899998888887764 579998887753
No 90
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.92 E-value=53 Score=31.84 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=43.6
Q ss_pred eeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEecc
Q 008066 219 VVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYA 298 (579)
Q Consensus 219 ~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~ 298 (579)
.++.+..|+.+|+++-+.. -.|.|.+.+... .+..-||..-.+.+.++ .||.|...|..+.
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~~~----------------k~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSLGV----------------KVDAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceeccccCc----------------eeECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 3588999999999998854 223444433222 23334888888888888 7999999998654
Q ss_pred C
Q 008066 299 S 299 (579)
Q Consensus 299 ~ 299 (579)
.
T Consensus 201 G 201 (228)
T MTH00140 201 G 201 (228)
T ss_pred C
Confidence 3
No 91
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.08 E-value=1.3e+02 Score=28.41 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=43.0
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
++.++.|+.+|+++-... -.|+|.+.+... .+..-||..-.+.+.++ .+|.|...|..+..
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~-~~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNL----------------KMDAIPGRINHLFFCPD-RHGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCc----------------eeecCCCceEEEEEEcC-CCEEEEEEeehhhC
Confidence 488999999999986554 333444443221 23334899988999888 79999999997544
No 92
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.51 E-value=1.6e+02 Score=27.77 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=52.6
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.+++.+... +..|.|.+-....+ .|. -||-...+.|.+
T Consensus 115 ~~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~k-------------------------~d~---~PG~~~~~~~~~ 162 (194)
T MTH00047 115 DKPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNLK-------------------------MDA---IPGRINHLFFCP 162 (194)
T ss_pred CceEEEeCCCEEEeeeecC----ccccceeccccCce-------------------------eec---CCCceEEEEEEc
Confidence 3457899999999999873 55777766543221 233 367777899999
Q ss_pred cCceeEEEEecchhhHH-ccceEEEEEec
Q 008066 534 DNPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
+.||.+-.-|.-.-=.. ..|-..++|.+
T Consensus 163 ~~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 163 DRHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred CCCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 99999999998665332 44555555544
No 93
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=43.66 E-value=1.9e+02 Score=25.98 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=33.8
Q ss_pred eEEEecCCEEEEEEEeCCCC-----CceEEeC--C-ccccC-CCCCCCCCcc-----cccccCCCCeEEEEEEe
Q 008066 67 TLEVNNGDTLVVKVTNKARY-----NVTIHWH--G-VRQMR-TAWADGPEFV-----TQCPIRPGMSYTYRFTI 126 (579)
Q Consensus 67 ~i~v~~Gd~v~v~l~N~l~~-----~~siH~H--G-~~~~~-~~~~DGv~~~-----~~~~i~PG~~~~y~f~~ 126 (579)
.=.++.|.+..|.+.=.... .+.+|.- | +.++. ....||-... --||+.+||.++|.+++
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEe
Confidence 44567787766665544431 2333221 1 22221 1225653322 36999999999999987
No 94
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=43.62 E-value=1.1e+02 Score=27.99 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=40.7
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
.+.+..|+.+||++..+... |.|.+.+..+. +..-||..-.+.+.++ .+|.|...|..+..
T Consensus 74 ~LvLP~g~~Vr~~lTS~DVI--HSF~VP~lgvK----------------~DavPGr~n~l~~~~~-~~G~y~gqCsElCG 134 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDVI--HSWSVPSLGIK----------------ADAIPGRLHKINTFIL-REGVFYGQCSEMCG 134 (162)
T ss_pred CEEEeCCCEEEEEEEeCccc--eeeeccccCce----------------eeccCCceEEEEEecC-CCeEEEEEcchhcC
Confidence 47889999999977665522 34444433222 2223777777777777 79999999986543
No 95
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=43.34 E-value=59 Score=31.48 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=50.5
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
+-+.++.|+.|++.+... +..|.| +|=+-+ ..+|.+ ||-...+.|+++
T Consensus 139 nel~lP~g~pV~~~ltS~----DViHSF-------~VP~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN----SVMNSF-------FIPQLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEEC----chhhhh-------hhhhcC------------------CeeecC---CCceEEEEEEeC
Confidence 457899999999999884 345654 443321 123544 566778899999
Q ss_pred CceeEEEEecchhhHH-ccceEEEEEec
Q 008066 535 NPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 535 npG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
.||.|.-.|--.-=.. ..|...+.|.+
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATD 214 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999997543222 55666666554
No 96
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=42.79 E-value=1.6e+02 Score=26.08 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=45.1
Q ss_pred CEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEE-------eEEEECcccEE-EEEEEcCCCCcceEEEEE
Q 008066 227 ETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTT-------SVIMLGPGQTT-DVLIKGDQPPSRYYLAAR 295 (579)
Q Consensus 227 ~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~-------d~l~l~pG~R~-dv~v~~~~~~g~~~l~~~ 295 (579)
.+|-|.+-|.|... +.++...++|+ +||+.+.|..+ +++.|.|||-- ++.+.-. ..|...+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~-lSGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA-LSGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC-CCcceEEEEE
Confidence 47899999999543 46788888987 89988866443 56779999987 5555544 3465555543
No 97
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=42.13 E-value=60 Score=31.47 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=44.0
Q ss_pred eeEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEecc
Q 008066 219 VVVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYA 298 (579)
Q Consensus 219 ~~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~ 298 (579)
.++.+..|+.+|+++-..... |.|.|- .-.-....-||..-.+.++++ +||.|...|..+.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~VP---------~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFIP---------QLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhhh---------hcCCeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 358999999999988766522 344442 222233334898889999988 7999999998764
Q ss_pred C
Q 008066 299 S 299 (579)
Q Consensus 299 ~ 299 (579)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 4
No 98
>PRK13202 ureB urease subunit beta; Reviewed
Probab=41.50 E-value=79 Score=26.32 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=42.2
Q ss_pred eEEEecC--CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG--DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G--d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|.+++| ++++|+|+|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|.
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L-V-~~gG~ 88 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGL-V-PLGGR 88 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEE-E-EccCC
Confidence 5999999 69999999999887554 77755544431122 2 3333445678888888777 3 34444
No 99
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=39.93 E-value=82 Score=23.71 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=22.2
Q ss_pred EEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCC
Q 008066 221 VPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADA 258 (579)
Q Consensus 221 ~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG 258 (579)
+.+.+|+..+||..... .+.+.+-.+++.. +|
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g 33 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG 33 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC
Confidence 56778888888865544 4677777777764 44
No 100
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=39.65 E-value=94 Score=26.06 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=41.9
Q ss_pred EEEEEeCCCCCceEEeCCccccCCCCCC-CCCcccccccCCCCeEEEEEEecCCCcceeeeecccccccceeeeEEEeCC
Q 008066 77 VVKVTNKARYNVTIHWHGVRQMRTAWAD-GPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPK 155 (579)
Q Consensus 77 ~v~l~N~l~~~~siH~HG~~~~~~~~~D-Gv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~Gl~G~liV~~~ 155 (579)
.|+++|.|.....|..|=-.-. .| |. ..+.||+++...|.. +-.|+-.|.|+..-.......-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965444444432211 12 32 359999999999975 5567778888875511123455555443
No 101
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.34 E-value=1.4e+02 Score=29.03 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=52.7
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.|++.+.+. +..|.|.+=....+ +.+-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~k----------------------------~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGVK----------------------------VDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccccceeccccCce----------------------------eECCCCcceeEEEEe
Confidence 4567899999999999984 44666655433221 233466777788999
Q ss_pred cCceeEEEEecchhhHH-ccceEEEEEec
Q 008066 534 DNPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
+.||.+...|.-.-... ..|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 99999999998776553 44555555544
No 102
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=38.92 E-value=2.4e+02 Score=23.85 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=20.1
Q ss_pred CeeEEEeeCCccc--CceEEeEEEECcccEEEEEEEcC
Q 008066 249 HQFTVVGADASYL--KPFTTSVIMLGPGQTTDVLIKGD 284 (579)
Q Consensus 249 h~~~via~DG~~~--~p~~~d~l~l~pG~R~dv~v~~~ 284 (579)
+++++...++... .+.....+.|.+|..|.+.+.-.
T Consensus 45 ~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 45 YTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred EEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECC
Confidence 4555544444322 23445666777777777776655
No 103
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=38.74 E-value=1.4e+02 Score=27.29 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=50.2
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.|++.+... +..|.|.+-..... .|. -||-...+.|.+
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgvK-------------------------~Da---vPGr~n~l~~~~ 119 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITAT----DVIHSWSVPSLGIK-------------------------ADA---IPGRLHKINTFI 119 (162)
T ss_pred cCCEEEeCCCEEEEEEEeC----ccceeeeccccCce-------------------------eec---cCCceEEEEEec
Confidence 3457899999999999873 45677665443221 132 356666788899
Q ss_pred cCceeEEEEecchhhHH-ccceEEEEEec
Q 008066 534 DNPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
+.||.+...|.-+-=.. ..|-..+.|..
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 99999999998654222 33555555543
No 104
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=37.51 E-value=1.1e+02 Score=23.75 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=29.8
Q ss_pred ecCCE--EEEEEeecCCCc--cEEEEEcCCeeEEEeeCCccc--CceEEeEEEECcccEEEEEEEcC----CCCcceEEE
Q 008066 224 DSGET--NLLRVINSGLNQ--PLFFTIANHQFTVVGADASYL--KPFTTSVIMLGPGQTTDVLIKGD----QPPSRYYLA 293 (579)
Q Consensus 224 ~~G~~--~rlRliN~g~~~--~~~~~l~gh~~~via~DG~~~--~p~~~d~l~l~pG~R~dv~v~~~----~~~g~~~l~ 293 (579)
.+|+. +.+.+-|.+... ...+++. .=+|=.+ .|.... .|.||+...+.++.. ..+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 45654 567888988543 2344443 1222221 233333 789997776666654 246899887
Q ss_pred EE
Q 008066 294 AR 295 (579)
Q Consensus 294 ~~ 295 (579)
..
T Consensus 73 ~~ 74 (78)
T PF10633_consen 73 VT 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 105
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.19 E-value=98 Score=30.02 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=42.2
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEecc
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYA 298 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~ 298 (579)
.+.++.|+.+|+++-+.. -.|+|.+.+.... +..-||..-.+.+.++ .+|.|...|..+.
T Consensus 141 ~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSEIC 200 (228)
T ss_pred eEEEecCCEEEEEEEeCC--ccccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChhhc
Confidence 488999999999998855 2234444333221 2233888888888888 7999999998654
No 106
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.13 E-value=49 Score=28.86 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=10.6
Q ss_pred ccccCCCCeEEEEE
Q 008066 111 QCPIRPGMSYTYRF 124 (579)
Q Consensus 111 ~~~i~PG~~~~y~f 124 (579)
|.-|.||++|+|.=
T Consensus 73 qP~L~PGe~F~Y~S 86 (127)
T PRK05461 73 QPVLAPGESFEYTS 86 (127)
T ss_pred CceECCCCCeEEeC
Confidence 55699999877754
No 107
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=36.56 E-value=26 Score=29.04 Aligned_cols=30 Identities=37% Similarity=0.527 Sum_probs=25.5
Q ss_pred EEEcCCCCCCeEEEecCCEEEEEEEeCCCC
Q 008066 57 ITVNGMYPGPTLEVNNGDTLVVKVTNKARY 86 (579)
Q Consensus 57 ~~~ng~~pgP~i~v~~Gd~v~v~l~N~l~~ 86 (579)
+.+||+.-=|-=.|+.||.|+|++.|..-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 568998767889999999999999998743
No 108
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=35.74 E-value=80 Score=30.36 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=43.8
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
++.+..|+.+|+++-.... . |.|.| |.-.-.+..-||..-.+-++++ .+|.|...|..+..
T Consensus 131 ~l~iP~g~~v~~~ltS~DV--i-------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~CG 191 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT--M-------TSFWI---------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANFNG 191 (217)
T ss_pred cEEEECCCEEEEEEECCch--h-------hhhhc---------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhhcC
Confidence 5889999999999876662 2 33444 3323333334899999999988 79999999986543
No 109
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.31 E-value=1.4e+02 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=21.3
Q ss_pred CCCcccccccCCCCeEEEEEEe-cCCCcceee
Q 008066 105 GPEFVTQCPIRPGMSYTYRFTI-QGQEGTLWW 135 (579)
Q Consensus 105 Gv~~~~~~~i~PG~~~~y~f~~-~~~~Gt~~y 135 (579)
|....+-.-|+||++.++.|.+ +...|.|-.
T Consensus 74 G~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~ 105 (181)
T PF05753_consen 74 GSLSASWERIPPGENVSHSYVVRPKKSGYFNF 105 (181)
T ss_pred CceEEEEEEECCCCeEEEEEEEeeeeeEEEEc
Confidence 4333444569999999999988 555676533
No 110
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=33.05 E-value=72 Score=26.00 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=27.6
Q ss_pred EEEEEEeecCCCccEEEEEcCCeeEEEeeCCccc--C--ceEEeEEEECcccEEEE
Q 008066 228 TNLLRVINSGLNQPLFFTIANHQFTVVGADASYL--K--PFTTSVIMLGPGQTTDV 279 (579)
Q Consensus 228 ~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~l~l~pG~R~dv 279 (579)
.|++||-|.+.. ++-|-...+.+...||... + .+....=.|.||+.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 488999999966 3566677777777777432 1 11123457778886554
No 111
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.69 E-value=52 Score=29.44 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=20.5
Q ss_pred eCCCcEEEEEEEe-cCc---eeEEEEecch
Q 008066 521 VPVGGWAVIRFVA-DNP---GVWLMHCHLD 546 (579)
Q Consensus 521 vp~~g~v~irf~a-dnp---G~wl~HCHi~ 546 (579)
||||..+.|.++. .|| |.|+|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 6789999999965 466 8999998543
No 112
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=31.26 E-value=2.7e+02 Score=22.21 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=35.6
Q ss_pred CEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEE
Q 008066 227 ETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAAR 295 (579)
Q Consensus 227 ~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~ 295 (579)
..++|.|.|.|... ..|.+. .... ......++.|.+|++.++.+.....-|-|-+..+
T Consensus 20 g~l~l~l~N~g~~~-~~~~v~-------~~~y---~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSAA-VTFTVY-------DNAY---GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCCc-EEEEEE-------eCCc---CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 37999999998443 344433 2111 1123367788888888888877544455666554
No 113
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=31.24 E-value=1.2e+02 Score=26.55 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=33.5
Q ss_pred EEEEEEeecCCCccEEEEEcCCeeEEEeeCCccc----CceEEeEEEECcccEEEEE
Q 008066 228 TNLLRVINSGLNQPLFFTIANHQFTVVGADASYL----KPFTTSVIMLGPGQTTDVL 280 (579)
Q Consensus 228 ~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~----~p~~~d~l~l~pG~R~dv~ 280 (579)
.|++||.|.+.. ++.|-+..+.+...||... +......=.|.|||.+...
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 488999998843 4577778888888887643 1233345577888766543
No 114
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=30.76 E-value=1.5e+02 Score=24.56 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=41.8
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|++++| +++.|.++|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|.
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L-V-~~gG~ 87 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVEL-V-AIGGN 87 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEE-E-EccCc
Confidence 5888888 78999999999887654 77755544431122 2 3333445678888888877 3 34444
No 115
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=30.54 E-value=1.5e+02 Score=28.40 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=49.7
Q ss_pred eeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 008066 455 KLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVAD 534 (579)
Q Consensus 455 ~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~ad 534 (579)
+-+.++.|+.|++.+... +..|.| +|=+.+ ..+|.+ ||-...+.|+++
T Consensus 130 n~l~iP~g~~v~~~ltS~----DViHsf-------~vP~l~------------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA----DTMTSF-------WIPQLG------------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred CcEEEECCCEEEEEEECC----chhhhh-------hchhhC------------------ceeecC---CCceEEEEEEeC
Confidence 347899999999999874 345554 442221 123554 677778999999
Q ss_pred CceeEEEEecchhhHH-ccceEEEEEec
Q 008066 535 NPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 535 npG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
.||.|--.|=-.-=.. .-|...++|.+
T Consensus 178 ~~G~y~g~Cae~CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 178 QVGTYRGRNANFNGEGFADQTFDVNAVS 205 (217)
T ss_pred CCEEEEEEehhhcCccccCCeEEEEEeC
Confidence 9999999996443221 35555666554
No 116
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=30.25 E-value=2.1e+02 Score=24.66 Aligned_cols=61 Identities=23% Similarity=0.442 Sum_probs=36.0
Q ss_pred CCeEEEecCCEEEEEEEeCCCC---CceEEeC----Ccccc-CCCCCCCCCcccccccCCCCeEEEEEEe
Q 008066 65 GPTLEVNNGDTLVVKVTNKARY---NVTIHWH----GVRQM-RTAWADGPEFVTQCPIRPGMSYTYRFTI 126 (579)
Q Consensus 65 gP~i~v~~Gd~v~v~l~N~l~~---~~siH~H----G~~~~-~~~~~DGv~~~~~~~i~PG~~~~y~f~~ 126 (579)
+..=.++.|..+.+.+.=..+. ......| |+..+ +....||--+ ..|||.+|+.++|.+++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 4455677888877766533322 2223333 43332 1122566433 37999999999999976
No 117
>PRK13203 ureB urease subunit beta; Reviewed
Probab=29.83 E-value=1.6e+02 Score=24.48 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=41.8
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|.+++| +++.|+++|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+.+. + .-.|.
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L-V-~~gG~ 87 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVEL-V-PLAGA 87 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEE-E-EccCc
Confidence 4888888 88999999999887654 77755544431122 1 3333445678888888877 3 34444
No 118
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=29.57 E-value=2.9e+02 Score=23.84 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=41.6
Q ss_pred EEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCccc-------CceEEeEEEECcccEEEEEEEcCC
Q 008066 221 VPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL-------KPFTTSVIMLGPGQTTDVLIKGDQ 285 (579)
Q Consensus 221 ~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~-------~p~~~d~l~l~pG~R~dv~v~~~~ 285 (579)
+++.....|+|++-..+ ...+.|+|..+ ++.++..- .+....++.+-.|++|.|.|...+
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 67777678999998444 45677888754 55555432 355677889999999999998764
No 119
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=28.98 E-value=1e+02 Score=31.50 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=44.8
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
++.+..|+.+||++-..... ++|.|. .-.-.+..-||..-.+.+.++ ++|.|...|..+..
T Consensus 152 eL~iP~g~pV~f~lTS~DVi--HSF~IP----------------~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEyCG 212 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM--NSFFIP----------------RLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASYSG 212 (315)
T ss_pred cEEEecCCEEEEEEEEchhh--hhhhhh----------------hhCCeeecCCCceeEEEEEcC-CCEEEEEEChhhcC
Confidence 48899999999999877632 233333 333344445788888888888 79999999987654
Q ss_pred C
Q 008066 300 A 300 (579)
Q Consensus 300 ~ 300 (579)
.
T Consensus 213 ~ 213 (315)
T PRK10525 213 P 213 (315)
T ss_pred c
Confidence 3
No 120
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=28.57 E-value=3.8e+02 Score=22.99 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=38.5
Q ss_pred EEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCccc-CceEEeEEEECcccEEEEEEEcCCCCc
Q 008066 221 VPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYL-KPFTTSVIMLGPGQTTDVLIKGDQPPS 288 (579)
Q Consensus 221 ~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~-~p~~~d~l~l~pG~R~dv~v~~~~~~g 288 (579)
+++.....|+|.+...+ ...+.|+|. .|++.++..- .+.....+.+..|++|.|.|..-+..+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 55655556899885433 346778876 3444443322 233445688888888888887764333
No 121
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=28.31 E-value=72 Score=22.53 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCCCccee-EEeCCCcEEEEEEEecCceeEEEEecchhhHHc
Q 008066 510 LVDPPLRNT-VGVPVGGWAVIRFVADNPGVWLMHCHLDVHITW 551 (579)
Q Consensus 510 ~~~p~~rDT-v~vp~~g~v~irf~adnpG~wl~HCHi~~H~~~ 551 (579)
+..|..+-+ |..+.|....++++...-..+=+||....|.+.
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 344555553 445678888899999888999999999999764
No 122
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.40 E-value=1.3e+02 Score=27.20 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=34.0
Q ss_pred CceEEEEEEEEEEeeecCceeeeEEEEcCC-CCCCeEEEecCCEEEEEEEeCCCCCceEEeCCc
Q 008066 33 AKAHHHDFVIQATPVKRLCKTHNTITVNGM-YPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGV 95 (579)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~-~pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~ 95 (579)
.....|-++.++...... ...+.+.+.|. .+|-..|-..+-.|+.+++ +......++..|+
T Consensus 31 ~~n~~yF~tpsEv~~~~~-~~~~~~RlGG~V~~GSv~r~~~~~~v~F~vt-D~~~~v~V~Y~Gi 92 (155)
T PRK13159 31 QRNMSYLFTPSQVRAGAA-AGYQQFRLGGMVKAGSIQRAADSLKVSFTVI-DKNAATQVEYTGI 92 (155)
T ss_pred hhCceEEECHHHHhcCCc-ccCCeEEEccEEecCcEEEcCCCcEEEEEEE-cCCcEEEEEEccC
Confidence 344567777776543221 22355666666 4676666323335666666 3345667777775
No 123
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.29 E-value=1.6e+02 Score=28.61 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=41.5
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEecc
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYA 298 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~ 298 (579)
.+.+..|+.+|+++-.+. -.|+|.+.+... +.| .-||..-.+.+.++ .+|.|...|..+.
T Consensus 145 ~lvlP~~~~v~~~itS~D--ViHsf~vp~lg~-------------k~d---aiPG~~~~~~~~~~-~~G~y~g~Cse~C 204 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAAD--VLHSFAVPSLSV-------------KID---AVPGRLNQTSFFIK-RPGVFYGQCSEIC 204 (234)
T ss_pred EEEEecCcEEEEEEEeCc--hhccccccccCc-------------eeE---ccCCceEeEEEEeC-CCEEEEEEChhhc
Confidence 488999999999998764 223344333222 222 33788888888888 7899999998654
No 124
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.03 E-value=50 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhhh
Q 008066 14 FFLGLVLLIASNAL 27 (579)
Q Consensus 14 ~~~~~~~~~~~~~~ 27 (579)
++++++|||++.++
T Consensus 11 l~LA~lLlisSeva 24 (95)
T PF07172_consen 11 LLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHhhhh
Confidence 33333444444333
No 125
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=26.57 E-value=34 Score=29.98 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=14.6
Q ss_pred cCceEEEEEEEEEEeeecCceeeeEEEEcCCCCCCeEEEecCCEEEEEEEe
Q 008066 32 NAKAHHHDFVIQATPVKRLCKTHNTITVNGMYPGPTLEVNNGDTLVVKVTN 82 (579)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pgP~i~v~~Gd~v~v~l~N 82 (579)
-..-..|.|+++...+. =++..|++|+||+.=
T Consensus 25 LDIQQ~YpF~v~tmPVp-------------------k~I~~GeTvEIR~~l 56 (137)
T PF12988_consen 25 LDIQQAYPFTVETMPVP-------------------KKIKKGETVEIRCEL 56 (137)
T ss_dssp S------SEEEEE-----------------------SS--TTEEEEEEEEE
T ss_pred cceeecCCcEEEEeccc-------------------cccCCCCEEEEEEEE
Confidence 34446688888877422 145788898888653
No 126
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=26.28 E-value=60 Score=25.89 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=24.1
Q ss_pred eeeEEEEcCCCCCCeEEEecCCEEEEE
Q 008066 53 THNTITVNGMYPGPTLEVNNGDTLVVK 79 (579)
Q Consensus 53 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~ 79 (579)
+...+.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 567899999998899999999999875
No 127
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.82 E-value=83 Score=28.10 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.1
Q ss_pred ccccCCCCeEEEEEEe---cCCCcceeeeecc
Q 008066 111 QCPIRPGMSYTYRFTI---QGQEGTLWWHAHS 139 (579)
Q Consensus 111 ~~~i~PG~~~~y~f~~---~~~~Gt~~yH~h~ 139 (579)
..||+||++++..+.. +...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 4589999999999943 4456999998875
No 128
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=25.71 E-value=2.1e+02 Score=24.49 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=41.8
Q ss_pred EEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceE----EeEEEECcccEEEEEEEcCC--CCcceEEEEE
Q 008066 222 PIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFT----TSVIMLGPGQTTDVLIKGDQ--PPSRYYLAAR 295 (579)
Q Consensus 222 ~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~----~d~l~l~pG~R~dv~v~~~~--~~g~~~l~~~ 295 (579)
.+..|+.+++++-=......-.+. -.+.+...+|..+--.. ...+....++++.+.++++. .+|.|.+...
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 477789888887665544433333 23666777776552111 12445544889999888885 5799999887
Q ss_pred e
Q 008066 296 A 296 (579)
Q Consensus 296 ~ 296 (579)
.
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 5
No 129
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=25.55 E-value=2.6e+02 Score=23.25 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=41.1
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|.+++| ++++|+++|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|.
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~L-V-~~~G~ 87 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVEL-V-PIGGK 87 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEE-E-EccCc
Confidence 4788888 68999999999887554 77755554431122 1 3333445578888888777 3 34444
No 130
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=24.46 E-value=2.2e+02 Score=24.70 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=42.3
Q ss_pred EEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCC
Q 008066 229 NLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQ 285 (579)
Q Consensus 229 ~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~ 285 (579)
+.|-|-|+.....+.+ .+..-...||..++.+...-+.|.|-+..++.|.-++
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D 79 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESD 79 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEeccc
Confidence 4566777776666544 3556678899999999999999999999999998775
No 131
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=24.20 E-value=1.9e+02 Score=30.77 Aligned_cols=38 Identities=29% Similarity=0.303 Sum_probs=28.1
Q ss_pred eEEeCCCcEEEEEEEecCceeEEEEe----cchhhHHccceE
Q 008066 518 TVGVPVGGWAVIRFVADNPGVWLMHC----HLDVHITWGLAM 555 (579)
Q Consensus 518 Tv~vp~~g~v~irf~adnpG~wl~HC----Hi~~H~~~GM~~ 555 (579)
.+.+.|.....+.|.++-||.|++=| |.+.-+..|=|.
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rml 634 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRML 634 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhcccee
Confidence 56777888889999999999997665 555555555443
No 132
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=23.92 E-value=9.1e+02 Score=29.64 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=39.6
Q ss_pred cCCEEEEEEEeCCCC-CceEEeCCccccCCCCCCCC-----CcccccccCCCCeEEEEEEecCCCcceeeeecccccccc
Q 008066 72 NGDTLVVKVTNKARY-NVTIHWHGVRQMRTAWADGP-----EFVTQCPIRPGMSYTYRFTIQGQEGTLWWHAHSSWLRAT 145 (579)
Q Consensus 72 ~Gd~v~v~l~N~l~~-~~siH~HG~~~~~~~~~DGv-----~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~h~~~~~~G 145 (579)
.|++..|++.+--+. ...++..|..+... .+|. +.++..-..-...++.+|+. ..+|.|=--+-. +....
T Consensus 1037 VGq~~~i~I~~~~~~~s~~~~~~gV~v~~~--~~~~~~s~~~~v~~q~~~~~~~~~l~~tp-~~aGi~~vv~~~-~~~~v 1112 (1289)
T PF06016_consen 1037 VGQQCSITIPGPNPQASVSVTHDGVEVFTG--TAGNLVSMVGPVALQYDPANNEWTLTWTP-STAGILDVVVDD-GPVPV 1112 (1289)
T ss_dssp TTT-EEEEEESS-TTEEEEEECTTCEEEEC--CCTTTCESSSEEEEEEETTTTEEEEEEE--SS-CEEEEEECT-TTCCE
T ss_pred ccceEEEEEccCCCCceEEEEECCEEEEEe--cCCcccccccceeEEEeccCceEEEEEcc-CCCceEEEEecc-CCccc
Confidence 466666666665543 33344445554332 2331 12333235667888999975 899987431111 11125
Q ss_pred eeeeEEEeCCCC
Q 008066 146 VYGALIIHPKEG 157 (579)
Q Consensus 146 l~G~liV~~~~~ 157 (579)
..|...|++++.
T Consensus 1113 ~~GS~~i~~Pd~ 1124 (1289)
T PF06016_consen 1113 PLGSFTIEPPDP 1124 (1289)
T ss_dssp EEEEEEEB----
T ss_pred ccceeEeeCCCC
Confidence 668899988864
No 133
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.85 E-value=2.8e+02 Score=26.85 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=48.4
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.+++.+... +..|.|.+-.... ..|.+ ||-...+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~-------------------------k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSA----DVLHSWAVPSLGV-------------------------KMDAV---PGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEEC----CccccccccccCc-------------------------eeecC---CCceEEEEEEc
Confidence 4567899999999999873 4567665543321 22333 56667788999
Q ss_pred cCceeEEEEecchhhHHccce
Q 008066 534 DNPGVWLMHCHLDVHITWGLA 554 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~~GM~ 554 (579)
+.||.+.--|--.--.....|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M 207 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFM 207 (229)
T ss_pred CCCEEEEEEcccccCcCcCCC
Confidence 999999999987665544444
No 134
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=23.19 E-value=27 Score=36.19 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred CceEEeCCccccCCCCCCCCCcccccccCCCCeEEEEEEecCCCcceeeee
Q 008066 87 NVTIHWHGVRQMRTAWADGPEFVTQCPIRPGMSYTYRFTIQGQEGTLWWHA 137 (579)
Q Consensus 87 ~~siH~HG~~~~~~~~~DGv~~~~~~~i~PG~~~~y~f~~~~~~Gt~~yH~ 137 (579)
...+-|.|+...-. +++...-....|+||++++-+|++ +.+|+...
T Consensus 77 g~~V~F~Gi~~~~~--~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 77 GKEVPFTGIRLRYD--TSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp ---------------------------------------------------
T ss_pred CcccccccEEEEEe--cCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 45577888876654 566544445679999999999966 45666543
No 135
>PHA00407 phage lambda Rz1-like protein
Probab=23.11 E-value=1.4e+02 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.101 Sum_probs=21.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccc
Q 008066 4 FNSRFANSFGFFLGLVLLIASNALLSF 30 (579)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (579)
+.+|-+..||+++..++-+.+|+..+.
T Consensus 28 l~rwkaaLIGlllicv~tISGCaSes~ 54 (84)
T PHA00407 28 LRRWKAALIGLLLICVATISGCASESN 54 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 467888888998888888888877543
No 136
>PRK13205 ureB urease subunit beta; Reviewed
Probab=22.55 E-value=2.3e+02 Score=25.33 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=41.7
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|.+++| +++.|+|+|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|.
T Consensus 12 ~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~L-V-~igG~ 87 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNL-V-AIGGD 87 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEE-E-EccCc
Confidence 4888888 78999999999877554 77755544321122 2 3333445578888888877 3 34444
No 137
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=22.26 E-value=2.3e+02 Score=23.99 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=26.1
Q ss_pred EEEEEEeecCCCccE-EEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcC
Q 008066 228 TNLLRVINSGLNQPL-FFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGD 284 (579)
Q Consensus 228 ~~rlRliN~g~~~~~-~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~ 284 (579)
.|+++|+|.+..... .+.+.|.. |..+. .....+.|.+|+..++.|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~-------~~~l~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP-------GAELQ-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S-------S-EE--ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CeEEE-CCCcceEECCCCEEEEEEEEE
Confidence 588999999955443 55555521 22221 134788889998888776654
No 138
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.21 E-value=2e+02 Score=27.96 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=41.8
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
.+.+..|+.+|+++-... -.|.|.+.+..+ .+..-||.+-.+.+.++ .||.|...|..+..
T Consensus 141 ~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~~----------------k~da~PG~~~~~~~~~~-~~G~~~g~C~e~CG 201 (230)
T MTH00129 141 RMVVPVESPIRVLVSAED--VLHSWAVPALGV----------------KMDAVPGRLNQTAFIAS-RPGVFYGQCSEICG 201 (230)
T ss_pred eEEEecCcEEEEEEEeCc--cccceeccccCC----------------ccccCCCceEEEEEEeC-CceEEEEEChhhcc
Confidence 588999999999886655 223333333221 22334888888888888 79999999986543
No 139
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.90 E-value=3.6e+02 Score=24.23 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=33.0
Q ss_pred eEEEEEEEEEEeeecCceeeeEEEEcCCC-CCCeEEEecCCEEEEEEEeCCCCCceEEeCCcc
Q 008066 35 AHHHDFVIQATPVKRLCKTHNTITVNGMY-PGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVR 96 (579)
Q Consensus 35 ~~~~~l~~~~~~~~~~g~~~~~~~~ng~~-pgP~i~v~~Gd~v~v~l~N~l~~~~siH~HG~~ 96 (579)
...|-++.++...... ...+.+.+.|.+ +|..-+- .|..++.+++-. .....++..|..
T Consensus 33 ~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~l 92 (148)
T PRK13254 33 NIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGIL 92 (148)
T ss_pred CCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCCC
Confidence 3446665555433222 223344444544 5544333 778888888765 456678888863
No 140
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.57 E-value=2.4e+02 Score=27.29 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=41.1
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEecc
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYA 298 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~ 298 (579)
.+.++.|+.+|+++-.... .|.|.+..... +.| .-||..-.+.+.++ .||.|...|..+.
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg~-------------k~d---aiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDV--LHSWAVPSLGL-------------KTD---AIPGRLNQTTLMST-RPGLYYGQCSEIC 200 (227)
T ss_pred eEEecCCCEEEEEEEECcc--ccccccccccc-------------cee---cCCCceEEEEEecC-CcEEEEEECcccc
Confidence 4889999999998876552 22333332221 222 33788888888888 7999999998654
No 141
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.47 E-value=2.5e+02 Score=25.25 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=41.7
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|.+++| +++.|.|+|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|.
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L-V-~~gG~ 110 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTL-V-PFAGK 110 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEE-E-EccCc
Confidence 4889998 78999999999877554 77755544431122 2 3333445578888888777 3 34444
No 142
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.37 E-value=3.7e+02 Score=26.04 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=51.2
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.|++.+.+. +..|.|.+-+...+ .| .-||-...+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~k-------------------------~d---aiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGVK-------------------------VD---AVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeC----CccccccccccCcc-------------------------ee---cCCCceEEEEEEe
Confidence 4567899999999999984 44666555443221 12 2366677788999
Q ss_pred cCceeEEEEecchhhHH-ccceEEEEEec
Q 008066 534 DNPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
+.||.+.--|.-.-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 99999999998665443 44444555443
No 143
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=21.10 E-value=5e+02 Score=25.15 Aligned_cols=17 Identities=6% Similarity=0.282 Sum_probs=14.2
Q ss_pred CeEEEecCCEEEEEEEe
Q 008066 66 PTLEVNNGDTLVVKVTN 82 (579)
Q Consensus 66 P~i~v~~Gd~v~v~l~N 82 (579)
|.+|+++|++-.||+.-
T Consensus 80 Plfrl~~~~~~~lRI~~ 96 (228)
T PRK15188 80 PLFVIQPKKENILRIMY 96 (228)
T ss_pred CeEEECCCCceEEEEEE
Confidence 88999999988888764
No 144
>PRK13198 ureB urease subunit beta; Reviewed
Probab=21.09 E-value=2.9e+02 Score=24.80 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=41.7
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcc
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGT 132 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt 132 (579)
.|.+++| +++.|.|.|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|.
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L-V-~~gG~ 115 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPL-I-PFGGK 115 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEE-E-EccCc
Confidence 4889999 88999999999877554 77755544321122 2 3333445578888888777 3 34444
No 145
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.06 E-value=60 Score=26.77 Aligned_cols=15 Identities=27% Similarity=0.281 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHH
Q 008066 10 NSFGFFLGLVLLIAS 24 (579)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (579)
++..+|++|++.++.
T Consensus 3 SK~~llL~l~LA~lL 17 (95)
T PF07172_consen 3 SKAFLLLGLLLAALL 17 (95)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344445544443333
No 146
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.72 E-value=3.5e+02 Score=26.20 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=50.4
Q ss_pred ceeEEeecCcEEEEEEecCCCCCCCCCCeeeeccceEEEEecCCCCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 008066 454 TKLYKLEYGSRVQIVLQDTSIFTPENHPIHIHGYDFYIIAEGFGNFNPKTDTSKFNLVDPPLRNTVGVPVGGWAVIRFVA 533 (579)
Q Consensus 454 ~~~~~~~~G~~ve~~l~n~~~~~~~~HP~HlHG~~F~vv~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~v~irf~a 533 (579)
.+.+.++.|+.+++.+.... .. |.|+|-+-+. ..|. -||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~da---~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMDA---VPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------cccc---CCCceEEEEEEe
Confidence 45678999999999998743 34 4555544321 1233 367777788999
Q ss_pred cCceeEEEEecchhhHH-ccceEEEEEec
Q 008066 534 DNPGVWLMHCHLDVHIT-WGLAMAFLVEN 561 (579)
Q Consensus 534 dnpG~wl~HCHi~~H~~-~GM~~~~~V~~ 561 (579)
+.||.+-..|.-.--.. ..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 99999999998744332 44545555543
No 147
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=20.49 E-value=1.2e+02 Score=25.46 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=7.5
Q ss_pred EecCCEEEEEEE
Q 008066 70 VNNGDTLVVKVT 81 (579)
Q Consensus 70 v~~Gd~v~v~l~ 81 (579)
+.+|+++.|-+.
T Consensus 80 I~~Gq~L~IP~~ 91 (103)
T PRK14125 80 IKAGDKLVIPVL 91 (103)
T ss_pred CCCCCEEEEecC
Confidence 566777766543
No 148
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.35 E-value=3.3e+02 Score=26.39 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEE
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAAR 295 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~ 295 (579)
.+.+..|+.+|+++-.+... |.|.| |.-.-.+..-||..-.+.+.++ .||.|...|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~K~DavPG~~n~~~~~~~-~~G~y~g~Cs 197 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL---------HSWAV---------PSLGVKTDAVPGRLNQTSFITT-RPGVFYGQCS 197 (227)
T ss_pred eEEEecCceEEEEEEecchh---------hcccc---------cccCceeEecCCceEEEEEEEc-ccceEEEEec
No 149
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.27 E-value=3.5e+02 Score=26.21 Aligned_cols=61 Identities=7% Similarity=0.092 Sum_probs=42.0
Q ss_pred eEEEecCCEEEEEEeecCCCccEEEEEcCCeeEEEeeCCcccCceEEeEEEECcccEEEEEEEcCCCCcceEEEEEeccC
Q 008066 220 VVPIDSGETNLLRVINSGLNQPLFFTIANHQFTVVGADASYLKPFTTSVIMLGPGQTTDVLIKGDQPPSRYYLAARAYAS 299 (579)
Q Consensus 220 ~~~v~~G~~~rlRliN~g~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pG~R~dv~v~~~~~~g~~~l~~~~~~~ 299 (579)
.+.++.|+.+|+++-.+. -.|+|.+..... +.|. -||..-.+.+.++ .+|.|...|..+..
T Consensus 141 ~l~lP~~~~v~~~~tS~D--ViHsf~vp~l~~-------------k~da---vPG~~~~~~~~~~-~~G~y~g~Cse~CG 201 (227)
T MTH00154 141 RLVLPMNTQIRILITAAD--VIHSWTVPSLGV-------------KVDA---VPGRLNQLNFLIN-RPGLFFGQCSEICG 201 (227)
T ss_pred eEEEecCCEEEEEEEcCc--hhhheeccccCC-------------eeec---CCCceEEEEEEEc-CceEEEEEeechhC
Confidence 588999999998886555 233444443221 2233 3788888888888 78999999986543
No 150
>PRK13201 ureB urease subunit beta; Reviewed
Probab=20.19 E-value=6e+02 Score=22.30 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=42.6
Q ss_pred eEEEecC-CEEEEEEEeCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCeEEEEEEecCCCcce
Q 008066 67 TLEVNNG-DTLVVKVTNKARYNVTI--HWHGVRQMRTAWAD-----G----PEFVTQCPIRPGMSYTYRFTIQGQEGTL 133 (579)
Q Consensus 67 ~i~v~~G-d~v~v~l~N~l~~~~si--H~HG~~~~~~~~~D-----G----v~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 133 (579)
.|.+++| +++.|.|+|..+.|.-+ |+|=......-..| | .|.-|..-..||++.+... + .-.|..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~L-V-~igG~r 88 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQL-V-EYAGKR 88 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEE-E-EccCce
Confidence 5888888 78999999999877554 77755544321122 2 3333455678888888887 3 445543
No 151
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=20.02 E-value=36 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=14.6
Q ss_pred CCeE-EEecCCEEEEE--EEeCCCCCceEEeCC
Q 008066 65 GPTL-EVNNGDTLVVK--VTNKARYNVTIHWHG 94 (579)
Q Consensus 65 gP~i-~v~~Gd~v~v~--l~N~l~~~~siH~HG 94 (579)
||.| .+++|..|... +.-.++.-++|.+|-
T Consensus 64 ~p~ifqvrpGsvVS~sGsvss~~p~I~si~i~r 96 (118)
T PF14481_consen 64 GPVIFQVRPGSVVSFSGSVSSPLPTITSIYILR 96 (118)
T ss_dssp EEGGGT--TT-EEEEEEE--SSS-EEEEEEE-H
T ss_pred CceEEEEcCCcEEEEeeeecCCCcccceEEEEe
Confidence 6888 89999997653 223334455666653
Done!