Query 008067
Match_columns 579
No_of_seqs 322 out of 1644
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02692 tRNA_CCA_actino tRNA 100.0 4E-72 8.6E-77 612.4 37.8 431 79-572 15-465 (466)
2 PRK13299 tRNA CCA-pyrophosphor 100.0 1.6E-62 3.4E-67 523.7 35.8 377 82-571 11-393 (394)
3 KOG2159 tRNA nucleotidyltransf 100.0 3.4E-58 7.4E-63 476.4 22.1 244 73-325 10-254 (416)
4 PRK13298 tRNA CCA-pyrophosphor 100.0 1.8E-52 3.9E-57 443.4 31.1 289 94-420 1-312 (417)
5 PRK10885 cca multifunctional t 100.0 1.1E-52 2.3E-57 450.1 29.1 290 94-420 1-309 (409)
6 COG0617 PcnB tRNA nucleotidylt 100.0 1.3E-51 2.8E-56 445.2 28.7 217 83-326 14-231 (412)
7 PRK11623 pcnB poly(A) polymera 100.0 1.9E-51 4.2E-56 439.0 24.2 228 68-326 47-286 (472)
8 TIGR01942 pcnB poly(A) polymer 100.0 3.3E-50 7.1E-55 424.8 26.8 224 72-326 14-241 (410)
9 PRK13297 tRNA CCA-pyrophosphor 100.0 8.4E-47 1.8E-51 392.3 24.4 265 92-418 10-279 (364)
10 PRK13296 tRNA CCA-pyrophosphor 100.0 2.5E-44 5.4E-49 370.4 20.2 201 94-326 1-208 (360)
11 cd05398 NT_ClassII-CCAase Nucl 100.0 1.6E-32 3.4E-37 252.9 14.5 125 92-231 15-139 (139)
12 PF01743 PolyA_pol: Poly A pol 100.0 4.6E-32 1E-36 245.9 10.4 124 96-235 1-126 (126)
13 PRK00227 glnD PII uridylyl-tra 99.9 8.6E-22 1.9E-26 222.2 13.8 177 229-422 275-460 (693)
14 PRK03381 PII uridylyl-transfer 99.9 3.8E-21 8.3E-26 221.9 18.6 178 229-421 313-499 (774)
15 PRK00275 glnD PII uridylyl-tra 99.9 3.8E-21 8.2E-26 224.8 15.2 189 218-422 339-555 (895)
16 PRK03059 PII uridylyl-transfer 99.8 3.2E-20 7E-25 216.1 18.8 180 228-422 328-535 (856)
17 TIGR01693 UTase_glnD [Protein- 99.8 8.3E-21 1.8E-25 222.3 11.6 182 225-422 316-523 (850)
18 PRK05092 PII uridylyl-transfer 99.8 7.1E-20 1.5E-24 215.9 12.6 177 229-422 384-588 (931)
19 PRK01759 glnD PII uridylyl-tra 99.8 2.5E-19 5.4E-24 208.9 13.8 181 228-422 325-531 (854)
20 PHA01806 hypothetical protein 99.8 9.9E-19 2.1E-23 164.2 10.5 111 84-214 28-151 (200)
21 PRK05007 PII uridylyl-transfer 99.7 8.6E-18 1.9E-22 196.7 12.6 182 225-422 347-556 (884)
22 PRK04374 PII uridylyl-transfer 99.7 7.2E-17 1.6E-21 188.0 10.9 179 229-422 339-544 (869)
23 COG2844 GlnD UTP:GlnB (protein 99.7 2.1E-16 4.5E-21 175.7 11.1 178 230-422 337-541 (867)
24 PF13735 tRNA_NucTran2_2: tRNA 99.2 1E-10 2.2E-15 109.0 12.5 51 514-565 94-145 (149)
25 PF12627 PolyA_pol_RNAbd: Prob 99.0 2.2E-10 4.8E-15 91.3 3.8 60 262-326 1-60 (64)
26 cd05402 NT_PAP_TUTase Nucleoti 95.1 0.26 5.7E-06 43.3 10.5 90 77-175 3-98 (114)
27 cd07749 NT_Pol-beta-like_1 Nuc 93.9 0.37 7.9E-06 45.2 9.0 72 94-175 17-90 (156)
28 PF06042 DUF925: Bacterial pro 93.7 0.76 1.7E-05 43.6 10.9 117 85-236 2-133 (163)
29 TIGR03401 cyanamide_fam HD dom 92.1 0.36 7.9E-06 48.4 6.6 56 362-417 81-142 (228)
30 TIGR00295 conserved hypothetic 91.4 0.3 6.4E-06 46.4 4.9 48 362-416 40-87 (164)
31 cd05397 NT_Pol-beta-like Nucle 91.1 0.4 8.8E-06 35.9 4.4 40 79-120 3-42 (49)
32 PF10706 Aminoglyc_resit: Amin 90.8 0.39 8.4E-06 45.2 4.8 55 79-139 8-65 (174)
33 COG1418 Predicted HD superfami 90.6 0.35 7.6E-06 48.3 4.7 64 336-402 34-97 (222)
34 COG3575 Uncharacterized protei 89.7 2.7 5.9E-05 40.1 9.4 39 82-121 19-65 (184)
35 PRK12703 tRNA 2'-O-methylase; 89.5 1.1 2.4E-05 47.4 7.6 48 362-416 209-256 (339)
36 TIGR00277 HDIG uncharacterized 88.7 0.31 6.8E-06 39.2 2.3 49 364-416 28-77 (80)
37 PRK10119 putative hydrolase; P 88.3 0.95 2E-05 45.5 5.9 77 337-416 24-107 (231)
38 COG1078 HD superfamily phospho 87.9 1.1 2.3E-05 49.1 6.4 78 295-380 20-100 (421)
39 PF01966 HD: HD domain; Inter 87.7 0.34 7.5E-06 42.0 2.1 54 361-417 23-89 (122)
40 PF09970 DUF2204: Nucleotidyl 86.7 3.3 7.2E-05 40.0 8.4 43 80-124 5-49 (181)
41 COG2206 c-di-GMP phosphodieste 86.6 1.7 3.7E-05 46.3 6.9 58 358-418 169-241 (344)
42 PRK00106 hypothetical protein; 86.5 5.8 0.00013 44.7 11.3 49 363-416 373-421 (535)
43 TIGR01596 cas3_HD CRISPR-assoc 86.1 1 2.2E-05 42.5 4.5 55 362-416 30-100 (177)
44 PRK13480 3'-5' exoribonuclease 85.2 1.8 3.9E-05 45.5 6.2 23 357-379 177-199 (314)
45 smart00471 HDc Metal dependent 85.0 0.72 1.6E-05 39.5 2.7 54 363-416 28-87 (124)
46 PRK12704 phosphodiesterase; Pr 84.4 1.9 4.2E-05 48.5 6.4 49 363-416 358-406 (520)
47 TIGR03319 YmdA_YtgF conserved 84.1 1.9 4.1E-05 48.5 6.1 49 363-416 352-400 (514)
48 PF14792 DNA_pol_B_palm: DNA p 82.9 3.8 8.2E-05 36.4 6.4 58 77-138 8-73 (112)
49 PRK13300 tRNA CCA-pyrophosphor 81.0 8.2 0.00018 42.6 9.4 43 78-121 26-68 (447)
50 PRK12705 hypothetical protein; 80.7 1.8 3.9E-05 48.4 4.3 49 363-416 346-394 (508)
51 TIGR03671 cca_archaeal CCA-add 80.6 7.1 0.00015 42.5 8.6 41 79-120 26-66 (408)
52 TIGR03276 Phn-HD phosphonate d 75.4 4.2 9E-05 39.2 4.5 55 364-423 44-105 (179)
53 PRK07152 nadD putative nicotin 74.9 9.5 0.00021 40.5 7.6 115 285-416 155-286 (342)
54 PF01909 NTP_transf_2: Nucleot 64.3 8.2 0.00018 32.0 3.5 40 83-124 4-43 (93)
55 cd00077 HDc Metal dependent ph 63.8 6.9 0.00015 33.9 3.1 36 362-397 27-69 (145)
56 COG3437 Response regulator con 61.3 13 0.00028 39.5 5.0 64 68-133 15-82 (360)
57 cd05400 NT_2-5OAS_ClassI-CCAas 60.1 81 0.0018 28.5 9.7 74 93-177 27-110 (143)
58 COG1746 CCA1 tRNA nucleotidylt 58.4 11 0.00024 40.9 3.9 103 68-176 12-122 (443)
59 KOG2681 Metal-dependent phosph 55.1 23 0.00049 38.6 5.6 69 305-380 51-124 (498)
60 PF14091 DUF4269: Domain of un 54.3 41 0.0009 31.5 6.5 29 109-137 29-57 (152)
61 TIGR00488 putative HD superfam 53.4 16 0.00034 34.2 3.8 51 363-416 31-100 (158)
62 PRK10854 exopolyphosphatase; P 48.9 22 0.00047 40.1 4.6 55 361-418 358-414 (513)
63 PF03458 UPF0126: UPF0126 doma 47.3 10 0.00022 31.5 1.3 15 98-112 39-53 (80)
64 COG4849 Predicted nucleotidylt 42.7 46 0.00099 32.9 5.0 44 93-137 25-76 (269)
65 PRK11031 guanosine pentaphosph 42.7 31 0.00068 38.7 4.6 55 361-418 350-406 (496)
66 PF08843 DUF1814: Nucleotidyl 41.9 46 0.00099 32.3 5.2 33 90-122 9-44 (233)
67 PF13950 Epimerase_Csub: UDP-g 41.4 40 0.00087 26.5 3.8 36 523-559 26-61 (62)
68 cd05403 NT_KNTase_like Nucleot 41.3 31 0.00068 28.2 3.4 39 83-123 7-46 (93)
69 COG3481 Predicted HD-superfami 40.6 63 0.0014 33.5 6.0 73 341-414 144-230 (287)
70 KOG0564 5,10-methylenetetrahyd 39.4 2.1E+02 0.0044 32.1 9.8 200 65-320 77-302 (590)
71 COG2860 Predicted membrane pro 37.1 17 0.00037 35.8 1.2 15 98-112 44-58 (209)
72 COG1669 Predicted nucleotidylt 35.6 80 0.0017 27.4 4.9 47 78-127 9-56 (97)
73 COG1708 Predicted nucleotidylt 33.2 72 0.0016 27.6 4.6 35 85-121 18-52 (128)
74 PF04439 Adenyl_transf: Strept 32.4 1E+02 0.0022 32.0 6.1 53 75-127 3-55 (282)
75 TIGR02578 cas_TM1811_Csm1 CRIS 29.5 31 0.00068 40.0 2.0 27 367-393 2-32 (648)
76 PTZ00418 Poly(A) polymerase; P 28.6 3.3E+02 0.0073 31.3 9.7 170 93-301 126-311 (593)
77 cd00141 NT_POLXc Nucleotidyltr 28.3 1.4E+02 0.003 31.3 6.4 67 68-139 136-205 (307)
78 TIGR02621 cas3_GSU0051 CRISPR- 26.0 1.3E+02 0.0029 35.9 6.3 19 398-416 764-782 (844)
79 TIGR03760 ICE_TraI_Pfluor inte 25.4 34 0.00073 34.1 1.1 15 364-378 106-120 (218)
80 KOG4022 Dihydropteridine reduc 21.4 1.2E+02 0.0026 29.0 3.8 53 64-121 45-97 (236)
81 PRK10578 hypothetical protein; 21.0 49 0.0011 32.7 1.3 15 98-112 41-55 (207)
82 PRK02126 ribonuclease Z; Provi 20.5 72 0.0016 33.8 2.5 27 521-549 176-202 (334)
No 1
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=100.00 E-value=4e-72 Score=612.38 Aligned_cols=431 Identities=24% Similarity=0.313 Sum_probs=326.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcc
Q 008067 79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKH 158 (579)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 158 (579)
.+..+.+.++.. |+++|+|||||||+|||++|+|+||+|++. ++++ .+.|...+.. ++. .++.
T Consensus 15 ~~~~i~~~l~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~----~~~~~~~~~~------~~~----~g~~ 77 (466)
T TIGR02692 15 LLAPLAAAFAAA--GHELYLVGGSVRDALLGRLGHDLDFTTDAR-PEET----LAILRPWADA------VWD----TGIA 77 (466)
T ss_pred HHHHHHHHHHhC--CCEEEEeCcHHHHHHcCCCCCCEEEEeCCC-HHHH----HHHHHHhhhh------ccc----cCcc
Confidence 344456666765 588999999999999999999999999985 4444 4444332211 111 1456
Q ss_pred eEEEEEEecCeeeeeecccccccCCCCCCcccccC-CHHHHHhcCCCCccceeeecCCC---ceecCccccHHHhhcCce
Q 008067 159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTS---SVEDLTGRGIADLKHGKI 234 (579)
Q Consensus 159 ~~t~~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~-t~~eDl~RRDfTINAla~~~~~~---~i~D~~g~G~~DL~~g~I 234 (579)
++|+++..+|..+||+++|+|.|+.+++.|+|+++ ++++||.||||||||||||++++ .++||+| |++||++|+|
T Consensus 78 ~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~~v~~~~~i~~Dl~rRDFTiNA~a~~~~~~~~g~l~D~~~-G~~Dl~~~~i 156 (466)
T TIGR02692 78 FGTVGAEKDGQQIEITTFRSDSYDGTSRKPEVTFGDTLEGDLIRRDFTVNAMAVRIPADGSLEFHDPVG-GLDDLLAKVL 156 (466)
T ss_pred cceEEEEECCcEEEEEecccccCcCCCCCCcccCCCCHHHHHHhccccHHHhhccccCCCCceeecCCC-cHHHHhCCce
Confidence 79999999999999999999999999999999886 89999999999999999999865 8999998 9999999999
Q ss_pred ecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHc
Q 008067 235 VTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGL 314 (579)
Q Consensus 235 R~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~ 314 (579)
|++++|.++|.|||+||||+||||+++||+|+++|.++|++. ..++..+|.|||+.||.++|.++++..+++.|+++
T Consensus 157 r~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~---~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~ 233 (466)
T TIGR02692 157 DTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVRAAMTEM---ADQIERISAERVRVELDKLLLGDHPRAGIDLMVET 233 (466)
T ss_pred EecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 999998999999999999999999999999999999999876 34568899999999999999999999999999999
Q ss_pred CCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHH----HHHhhccCCCcccHHHHHHHhhhhcccCccccc--CCCC--
Q 008067 315 TLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDL----TQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKD--NKGK-- 386 (579)
Q Consensus 315 gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~--~~gk-- 386 (579)
|++..+| ||+.... ..+...+|.+++|.. +..+. .....+....+.|||||||+||+.+.. +.|+
T Consensus 234 glL~~~~--Pe~~~~~----~~~~~~~h~~~v~~Htl~vl~~~~-~l~~~~~~~~l~lAaLLHDiGK~~t~~~~~~g~~~ 306 (466)
T TIGR02692 234 GLADRVL--PEIPALR----LEIDEHHQHKDVYEHSLTVLRQAI-DLEDDGPDLVLRWAALLHDIGKPATRRFEPDGRVS 306 (466)
T ss_pred hhhhhcC--chHHHHh----cccccCCCCCcHHHHHHHHHHHHH-hccccccCHHHHHHHHHhhccCCCCcccccCCCcc
Confidence 9999999 9973211 112222232333321 11111 101112234689999999999987632 2233
Q ss_pred --cccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHH
Q 008067 387 --KIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLL 460 (579)
Q Consensus 387 --~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~l 460 (579)
+|+.+|+ .++.+|++|+++++.|++||++|+.+.... ..+| ....+.+++
T Consensus 307 f~gH~~~Ga~~a~~iL~rLk~s~~~~~~V~~LV~~H~~~~~~~------------~~~~------------~~~~v~r~~ 362 (466)
T TIGR02692 307 FHHHEVVGAKMVRKRMRALKYSKQMVEDVSRLVELHLRFHGYG------------DGQW------------TDSAVRRYV 362 (466)
T ss_pred cCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhcc------------cCCC------------CHHHHHHHH
Confidence 3777776 589999999999999999999997543220 0011 112334678
Q ss_pred HHhhhhhHHHHHHHHhcCCCccCcchhhhhhhh-hhhHHHHHHHHHHHHHHHc-CCCcccccCcccChHHHHHHcCCCCC
Q 008067 461 REIKKFWRVALLISTLLYPTHVDHTEDMLNQHF-QLDSKRDLFVAAEKAITKL-GLDEVWDLKPLVNGKDIMNVLQLKSG 538 (579)
Q Consensus 461 R~~g~lWr~~llla~~~~~~~~~~~~d~~~~~~-~~~~~~~~y~~~~~~I~~~-~L~~a~~~KPLLnGkdIm~~Lglk~p 538 (579)
+++|+.+...++++.+ |+.+.+. ......+.|..+.+.+.+. ...+...++|+|||+|||+.||++ |
T Consensus 363 ~~~g~~l~~L~~L~~A----------D~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~dL~~~lg~~-p 431 (466)
T TIGR02692 363 RDAGPLLPRLHKLVRA----------DCTTRNKRKAARLQAAYDDLEERIAELAAQEDLARVRPDLDGNEIMEILGIK-P 431 (466)
T ss_pred HHhhhhHHHHHHHHHH----------hhccCCchhHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHcCCC-C
Confidence 8888877665555432 2111111 1112234555555544331 122345688999999999999999 9
Q ss_pred CchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 008067 539 GPLVREWQQKLLAWQLAHPSGTAEECIDWMKETH 572 (579)
Q Consensus 539 GP~vg~~l~~llewQL~~P~~t~ee~l~~lk~~~ 572 (579)
|||+|++++.+.+||+++|..|++||+.|++.+.
T Consensus 432 Gp~iG~iL~~l~~~~~~g~~~~~~eal~~~~~~~ 465 (466)
T TIGR02692 432 GPEVGQAWKYLKELRLERGPLEREEAIAELLAWW 465 (466)
T ss_pred ChHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999998764
No 2
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=1.6e-62 Score=523.72 Aligned_cols=377 Identities=25% Similarity=0.285 Sum_probs=279.6
Q ss_pred HHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEE
Q 008067 82 CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLET 161 (579)
Q Consensus 82 ~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t 161 (579)
.+++.++.. |+++|+|||||||+|||++|+|+||||++. + +.+.+.|... +. .++.++|
T Consensus 11 ~i~~~l~~~--g~~~ylVGG~VRD~LLg~~~~DiDi~~~~~-~----~~~~~~~~~~----------~~----~g~~~gt 69 (394)
T PRK13299 11 PILEKIKEA--GFEAYFVGGSVRDYLLGRPIHDVDIATSAY-P----EEVKAIFPRT----------VD----VGIEHGT 69 (394)
T ss_pred HHHHHHHHc--CCeEeeccchHHHHHcCCCCCCEEEecCCC-H----HHHHHHhhhh----------hh----ccccCCE
Confidence 355666765 588999999999999999999999999984 4 3444444321 10 1345689
Q ss_pred EEEEecCeeeeeecccccccCCCCCCcc-ccc-CCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCC
Q 008067 162 ATMKLYDLWIDFVNLRCEDYSENSRIPT-MRF-GTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239 (579)
Q Consensus 162 ~~~~~~~~~iD~~~~R~e~y~~~~r~p~-v~~-~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~ 239 (579)
+++..+|..+||+++|+|.++.+++.|. +.+ +++++||.|||||||||||+++ |.++||+| |++||++|+||++++
T Consensus 70 ~~v~~~~~~~ei~t~R~e~~~~d~~~p~~~~~~~~i~eDl~RRDFTINAma~~~~-g~liDpf~-G~~DL~~~~iR~v~~ 147 (394)
T PRK13299 70 VLVLENGEEYEVTTFRTESEYVDYRRPSEVTFVRSLEEDLKRRDFTINAIAMDEN-GEIIDLFD-GLEDLKNRLIRAVGN 147 (394)
T ss_pred EEEEECCEEEEEEeeccccCccCCCCCccccCCCCHHHHHHhccccHHHhhcCCC-CCEeeCCC-CHHHHhCCceeecCC
Confidence 9998999999999999997777888885 655 5999999999999999999985 77999998 999999999999999
Q ss_pred CCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcE
Q 008067 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWI 319 (579)
Q Consensus 240 ~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~ 319 (579)
|.++|.|||+|||||+|||++|||+|+++|.++|++. ...+.++|.|||+.|+.|+|.++++..+++.|.++|++..
T Consensus 148 ~~~~f~eDplRiLRa~Rfaa~l~f~i~~~t~~~i~~~---~~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~ 224 (394)
T PRK13299 148 AEERFQEDALRMMRAVRFASQLGFDLETETFEAMKTQ---APLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNY 224 (394)
T ss_pred HHHhhccCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHh
Confidence 8899999999999999999999999999999999876 4667899999999999999999999999999999999987
Q ss_pred eeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHc
Q 008067 320 VFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSL 399 (579)
Q Consensus 320 i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rL 399 (579)
| |+... . . ....+ +..... .. .....+.||+++|++++.. ...++++|
T Consensus 225 -~--p~l~~-~--~----~~~~~------~~~~~~-~~---~~~~~~~~a~ll~~~~~~~------------~~~~l~rl 272 (394)
T PRK13299 225 -L--PGLKG-K--E----ENLLK------LTQLLW-FS---FETSEQAWAALLISLKIEN------------IKSFLKAW 272 (394)
T ss_pred -C--ccccc-c--h----HHHHH------HHHHHh-cc---CCCHHHHHHHHHHhcCHHH------------HHHHHHHh
Confidence 7 98621 0 0 01111 111111 00 1224568999999996421 24689999
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHHHHhhhhh--HHHHHHHHhc
Q 008067 400 KRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFW--RVALLISTLL 477 (579)
Q Consensus 400 kl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~lR~~g~lW--r~~llla~~~ 477 (579)
++|+++.+.|..+++.|... . . . .++ . ..++.+|.-+ ....+.....
T Consensus 273 ~ls~~~~~~i~~li~~~~~~--~---~---~-------~~~-----------~-----~~~~~~~~~~~~~~~~l~~~~~ 321 (394)
T PRK13299 273 KLSNKFIKDVVKLLALYALR--S---E---R-------SWE-----------K-----LDLYQYGKEIALLAEDLRQAQG 321 (394)
T ss_pred CCCHHHHHHHHHHHHHhhhc--c---c---c-------ccc-----------H-----HHHHHcChHHHHHHHHHHHHhh
Confidence 99999999999999776311 0 0 0 010 0 1223333222 1111111000
Q ss_pred CCCccCcchhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccccc-CcccChHHHHHHcCCCCCCchHHHHHHHHHHHHHcC
Q 008067 478 YPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDL-KPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAH 556 (579)
Q Consensus 478 ~~~~~~~~~d~~~~~~~~~~~~~~y~~~~~~I~~~~L~~a~~~-KPLLnGkdIm~~Lglk~pGP~vg~~l~~llewQL~~ 556 (579)
. ... .+.+.. ....+ ..|+. +|+|||+|||+.+|++ |||++|++++++.++|+++
T Consensus 322 -----~--------~~~----~~~~~~---~~~~l---~~~~~~~l~i~G~DLm~~lG~~-pGp~ig~iL~~l~~~~l~g 377 (394)
T PRK13299 322 -----L--------SVD----EEAIQE---LYQAL---PIHDKKELAVNGGDLLKHFGKK-PGPWLGETLRKIEEAIVTG 377 (394)
T ss_pred -----c--------ccc----HHHHHH---HHHhC---ccccCCCCCCCHHHHHHhcCCC-CChHHHHHHHHHHHHHHcC
Confidence 0 000 011222 22221 33443 4899999999988999 9999999999999999999
Q ss_pred CCCCHHHHH-HHHHHH
Q 008067 557 PSGTAEECI-DWMKET 571 (579)
Q Consensus 557 P~~t~ee~l-~~lk~~ 571 (579)
+..|++|++ +|+++.
T Consensus 378 ~i~n~~e~L~~~~~~~ 393 (394)
T PRK13299 378 ELENEKEAILEWLKEH 393 (394)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 999998887 788753
No 3
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-58 Score=476.38 Aligned_cols=244 Identities=46% Similarity=0.665 Sum_probs=216.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCC
Q 008067 73 TDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSN 152 (579)
Q Consensus 73 ~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~ 152 (579)
+..+...++.+++.+...| +++|||||||||+|||++|+||||||++++|+ +.+.+..+..+.|... +.++|+ .|
T Consensus 10 ~s~~~~~~~~v~~~~~~~~--~elRiaGGwVRD~LLg~~p~DiDiatta~~g~-~~e~f~~~~~~~~~~~-~~~h~~-~n 84 (416)
T KOG2159|consen 10 TSLLTDSTRLVLSKLKKKG--YELRLAGGWVRDLLLGREPKDIDIATTAMSGQ-MKEMFQSAQIRVGKKF-PICHVI-MG 84 (416)
T ss_pred HHhccHHHHHHHHHhhcCC--CeeEEecccHHHHHcCCCCcccceeeccccHH-HHHHHHHHHHhhcccC-Ccceee-cC
Confidence 5666777888888877765 99999999999999999999999999999774 4455555444455554 567888 89
Q ss_pred CCCCcceEEEEEEecCeeeeeecccccccCCCCCCcccccCCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcC
Q 008067 153 PDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHG 232 (579)
Q Consensus 153 ~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g 232 (579)
|++++|.+|+++++++.+|||+++|.|.|++.+ +|.++++|..+|+.|||||||+++||+.+|.|+||+| |++||+++
T Consensus 85 p~~skhletat~~i~~~~iD~v~lr~~~y~e~~-~~~~~dgt~~~nalRRD~TIN~Lffn~~~~~VeDytg-G~eDL~~~ 162 (416)
T KOG2159|consen 85 PIKSKHLETATFRITTLRIDFVNLRREAYTETS-IPYVTDGTRDENALRRDFTINSLFFNPFDGTVEDYTG-GLEDLKNK 162 (416)
T ss_pred CcceeeecceeeeeeccccceeecCcccccccC-CCCCCcCcchhhhhhhccchhhhhccCCCCceeeccc-cHhHHhcC
Confidence 999999999999999999999999999999776 9999999999999999999999999999999999998 99999999
Q ss_pred ceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008067 233 KIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHIC 312 (579)
Q Consensus 233 ~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~ 312 (579)
+||||+++.++|.|||+||||+||||+|+||+|++++.+++....+..++.+++|+|||+.|+.|||.++++..+|++|+
T Consensus 163 kvrt~~~A~~tf~eDpLRILR~iRFaaRlgftid~~~~e~~~~~k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~ 242 (416)
T KOG2159|consen 163 KVRTVLHAKQTFLEDPLRILRGIRFAARLGFTIDEESKETLEAIKENVALLAKISRERIGVEINKMLVGNSAEASLRLLW 242 (416)
T ss_pred eEEeeccccceeccchHHHHHHHHHHHhhcCccCcccHHHHhhHHHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999977776666666666888899999999999999999999999999999
Q ss_pred H-cCCCcEeeeCCC
Q 008067 313 G-LTLFWIVFKLPL 325 (579)
Q Consensus 313 ~-~gll~~i~~~Pe 325 (579)
+ .++...++ |-
T Consensus 243 ~~~~~~~i~l--p~ 254 (416)
T KOG2159|consen 243 RLFGFEYIFL--PI 254 (416)
T ss_pred HhcCceEEec--cc
Confidence 9 55554444 54
No 4
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=1.8e-52 Score=443.41 Aligned_cols=289 Identities=19% Similarity=0.135 Sum_probs=213.1
Q ss_pred CeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeeeee
Q 008067 94 TVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDF 173 (579)
Q Consensus 94 ~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~iD~ 173 (579)
+++|+|||||||.|||++++|+||+|.+.+++++ +...+...|.. ++++ .+ .....++
T Consensus 1 m~~YlVGGaVRD~LLg~~~~D~D~vv~g~~~~~~---~~~~~~~vG~~----f~v~-------------l~--~~~~~e~ 58 (417)
T PRK13298 1 MKIYLVGGAVRDSLLNLPVKDKDWVVVGGTPKIL---LSINFQQVGKD----FPVF-------------LH--PETHEEY 58 (417)
T ss_pred CcEEEEccHHHHHHcCCCCCCeeEEecCCCHHHH---HHHHHHHhCCe----eEEE-------------Ee--CceeEEE
Confidence 3689999999999999999999999988655433 12223333432 2222 21 2234577
Q ss_pred ecccccccCCCCCC---cccc-cCCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCCCCCCcccCHH
Q 008067 174 VNLRCEDYSENSRI---PTMR-FGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPL 249 (579)
Q Consensus 174 ~~~R~e~y~~~~r~---p~v~-~~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPl 249 (579)
+.+|+|.|+.+|.. +.+. ..|++|||.||||||||||||++ |.++||+| |++||++|+||+++ .+|.|||+
T Consensus 59 a~aRter~~g~g~~g~~~~~~~~~tleeDL~RRDFTINAmA~~~~-g~liDp~~-G~~DL~~r~lR~v~---~~F~EDPL 133 (417)
T PRK13298 59 ALARTERKSGVGYTGFITDTSSDVTLEEDLIRRDLTINAIAQDEN-GNYIDPFQ-GKKDIQLRLLRHVS---ESFIEDPL 133 (417)
T ss_pred EeecccccccCCCCCcccccCCCCCHHHHHHhcccceeeeEECCC-CCEEeCCC-cHHHHHCCcEecCC---cccccCHH
Confidence 88899877655432 2222 25999999999999999999975 67999998 99999999999995 48999999
Q ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCC
Q 008067 250 RVLRAIRFGARF---DFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 250 RiLRa~Rfaarl---gf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~ 326 (579)
|||||+|||++| ||+|+++|.++|++.. ....+..+|.|||+.|+.|+|.+++|..+++.|.++|+|..+| ||.
T Consensus 134 RiLRa~RFaar~~~lgF~i~~~T~~~i~~~~-~~~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~--PEl 210 (417)
T PRK13298 134 RVLRVARFAALLVHLGFKIAKETMILMCIMV-KKHELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLF--PEI 210 (417)
T ss_pred HHHHHHHHHHHhccCCCccCHHHHHHHHHHh-hhhhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhC--cch
Confidence 999999999995 9999999999998652 2256689999999999999999999999999999999999999 996
Q ss_pred CCchhhcccchhh--hhH-----HHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCC-----CCcccchHH-
Q 008067 327 VEPEVLEGCEMFC--TAY-----LDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNK-----GKKIPVVNY- 393 (579)
Q Consensus 327 ~~~~~~~~~~~~~--~~~-----~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~-----gk~h~~~~~- 393 (579)
... .++.|.. .+| .++...+.... . . .....+.|||||||+||+.+.... ..+|...|.
T Consensus 211 ~~~---~g~~q~~~~~~~~~d~~~htl~~l~~~~--~-~--~~~l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~ 282 (417)
T PRK13298 211 DFL---YEKPYFLNSFFKKFNLGNYILMGLSKIS--K-L--TKDIDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAAS 282 (417)
T ss_pred HHH---cCCCCCccccCCchhHHHHHHHHHHHHH--h-c--CCCHHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHH
Confidence 211 1111211 011 12111111111 0 1 123457899999999998642111 123566655
Q ss_pred ---HHHHHcCCCcccHHHHHHHHHHHHHHH
Q 008067 394 ---TFRDSLKRKASDAETVMNIHRVLEKFL 420 (579)
Q Consensus 394 ---~i~~rLkl~~~d~~~V~~Lv~~h~~~~ 420 (579)
.+++|||+|++..+.+..++++|...+
T Consensus 283 ~a~~i~~RLk~pn~~~~~~~~li~~H~~~~ 312 (417)
T PRK13298 283 LIKNLCKRFKIPSYIRNIAVLNTGFYFFLY 312 (417)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Confidence 699999999999999999999997643
No 5
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=100.00 E-value=1.1e-52 Score=450.14 Aligned_cols=290 Identities=21% Similarity=0.181 Sum_probs=215.5
Q ss_pred CeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeeeee
Q 008067 94 TVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDF 173 (579)
Q Consensus 94 ~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~iD~ 173 (579)
+++|+|||||||+|||++|+|+||+|++..++++ .. .+.. .+ ++.|.+.. ..+...++
T Consensus 1 ~~~ylVGG~VRD~Llg~~~~D~D~vv~~~~~~~~----~~----~~~~------~~------g~~f~v~~--~~~~~~e~ 58 (409)
T PRK10885 1 MKIYLVGGAVRDALLGLPVKDRDWVVVGATPEEM----LA----QGYQ------QV------GKDFPVFL--HPKTHEEY 58 (409)
T ss_pred CcEEEeccHHHHHHcCCCCCCeeEEeeCChHHHH----Hh----CCCe------ec------CceeEEEE--eCCceEEE
Confidence 3689999999999999999999998876544322 11 1100 00 23334332 23445688
Q ss_pred ecccccccCCCCCCcc-cc---cCCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCCCCCCcccCHH
Q 008067 174 VNLRCEDYSENSRIPT-MR---FGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPL 249 (579)
Q Consensus 174 ~~~R~e~y~~~~r~p~-v~---~~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPl 249 (579)
+.+|+|.++.+|...- +. ..|++|||.||||||||||||. +|.++||+| |++||++|+||++++ +|.|||+
T Consensus 59 ~~~r~er~~~~g~~~~~~~~~~~~~l~eDl~RRDfTiNA~a~~~-~~~liDp~~-G~~Dl~~~~lr~v~~---~f~eDPl 133 (409)
T PRK10885 59 ALARTERKSGRGYTGFTCYAAPDVTLEEDLIRRDLTINAMAQDD-DGELIDPYG-GQRDLEARLLRHVSP---AFAEDPL 133 (409)
T ss_pred EeeeeccccCCCCCCceeccCCCCCHHHHHHhccchhhhheeCC-CCCEecCCC-CHHHHhCCceEeCCc---hhhhCHH
Confidence 8899998876654321 11 2399999999999999999995 688999998 999999999999964 6999999
Q ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCC
Q 008067 250 RVLRAIRFGARF---DFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 250 RiLRa~Rfaarl---gf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~ 326 (579)
||||++|||+++ ||+|+++|.++|++.. ....+..++.|||+.|+.++|.+++|..+++.|+++|+|..+| ||+
T Consensus 134 RiLRa~RFaarl~~lgf~i~~~T~~~i~~~~-~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~--PEl 210 (409)
T PRK10885 134 RVLRVARFAARFAHLGFRIAPETLALMREMV-ASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLL--PEI 210 (409)
T ss_pred HHHHHHHHHHHhccCCCCcCHHHHHHHHHhh-hhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHh--hHH
Confidence 999999999999 9999999999998752 2225677899999999999999999999999999999999999 997
Q ss_pred CCchhhcccchhhhhHH-HHHHH----HHHHhhccCCCcccHHHHHHHhhhhcccCcccccC---CCCcccchHH----H
Q 008067 327 VEPEVLEGCEMFCTAYL-DAAWD----LTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDN---KGKKIPVVNY----T 394 (579)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-~~~~~----l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~---~gk~h~~~~~----~ 394 (579)
.. ..+..|...+|. ++++. .+..+. . .. ....+.|||||||+||+.+... ...+|+..|+ .
T Consensus 211 ~~---l~~~~Q~~~~H~e~dv~~Htl~~l~~~~-~-l~--~~l~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~ 283 (409)
T PRK10885 211 DA---LFGVPQPAKWHPEIDTGIHTLMVLDQAA-K-LS--PSLDVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQ 283 (409)
T ss_pred HH---HhcCCCCcCCCCCCcHHHHHHHHHHHHH-h-cC--CCHHHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHH
Confidence 31 112223333332 11221 111111 1 11 2245899999999999865321 1125777776 5
Q ss_pred HHHHcCCCcccHHHHHHHHHHHHHHH
Q 008067 395 FRDSLKRKASDAETVMNIHRVLEKFL 420 (579)
Q Consensus 395 i~~rLkl~~~d~~~V~~Lv~~h~~~~ 420 (579)
+|+||++|++..+.+.+++++|+.+.
T Consensus 284 i~~RLk~p~~~~~~~~~lv~~H~~~~ 309 (409)
T PRK10885 284 LCQRLRVPNECRDLALLVAEEHDNIH 309 (409)
T ss_pred HHHHcCcCHHHHHHHHHHHHHhhccc
Confidence 89999999999999999999997543
No 6
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-51 Score=445.18 Aligned_cols=217 Identities=34% Similarity=0.478 Sum_probs=188.0
Q ss_pred HHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEE
Q 008067 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETA 162 (579)
Q Consensus 83 l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~ 162 (579)
+.+.++..| +++|+|||||||+|||++++|+||||++. + +++.+.+... +. .++.++|+
T Consensus 14 v~~~l~~~g--~eaylVGGaVRD~LLG~~~~D~Diat~~~-p----~~~~~~~~~~----------~~----~G~~f~t~ 72 (412)
T COG0617 14 VLSKLKEAG--YEAYLVGGAVRDLLLGRPPKDVDIATNAT-P----EEVKKLFRNT----------RP----VGRKFGTV 72 (412)
T ss_pred HHHHHHhCC--CeEEEeCcHHHHHHcCCCCcceeeeCCCC-C----HHHHHHHhhh----------hh----hhhhcCeE
Confidence 455556554 89999999999999999999999999997 3 3344444310 00 13456888
Q ss_pred EEEecCeeeeeecccccccCCCCCC-cccccCCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCCCC
Q 008067 163 TMKLYDLWIDFVNLRCEDYSENSRI-PTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPK 241 (579)
Q Consensus 163 ~~~~~~~~iD~~~~R~e~y~~~~r~-p~v~~~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~ 241 (579)
++.++|..+|++++|+|.|..+++. |.+.++|+++||.||||||||||||+.+++|+||+| |+.||++|+||++++|.
T Consensus 73 ~v~~~~~~~ev~T~R~~~~~~~~~~~~~~~~~tleeDl~RRDFTINAla~~~~~~~iiD~~g-G~~DL~~~~lR~i~~~~ 151 (412)
T COG0617 73 TVPFNGEIIEVTTFRKEGYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDPEDGEIIDPFG-GLKDLENRVLRHIGDAS 151 (412)
T ss_pred EeccCCEEEEEEEeecCCCCcCCCcCCcCCCCCHHHHHHHhcccHHhhccCCCCCeEEeCCC-CHHHHhcCceeccCCHH
Confidence 8888888899999999997545544 456778999999999999999999999999999998 99999999999999988
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEee
Q 008067 242 ATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVF 321 (579)
Q Consensus 242 ~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~ 321 (579)
++|.|||+||||++|||++|||.++++|.++|+.. ..++..+|.|||+.|+.|||.++++..++++|.++|++..+|
T Consensus 152 ~rf~EDplRiLRa~RFaa~l~f~i~~~t~~~i~~~---~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~ 228 (412)
T COG0617 152 ERFREDPLRILRAARFAARLGFTIEPETEEAIRLM---APLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILF 228 (412)
T ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH---HHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcC
Confidence 89999999999999999999999999999999876 455567999999999999999999999999999999999999
Q ss_pred eCCCC
Q 008067 322 KLPLQ 326 (579)
Q Consensus 322 ~~Pe~ 326 (579)
|+.
T Consensus 229 --p~~ 231 (412)
T COG0617 229 --PEL 231 (412)
T ss_pred --hhH
Confidence 885
No 7
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=100.00 E-value=1.9e-51 Score=438.97 Aligned_cols=228 Identities=29% Similarity=0.440 Sum_probs=196.5
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceE
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFG 147 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~ 147 (579)
....+++.-.+|+ +.|+.. |+++|||||||||+|||++|+|+||+|++. + +++.+.|++. .
T Consensus 47 ~~~~i~~~a~~Vl----~~L~~~--G~eaYLVGG~VRDlLLG~~pkD~DIaT~A~-p----eev~~lf~~~--------r 107 (472)
T PRK11623 47 SRKDISENALKVL----YRLNKA--GYEAYLVGGGVRDLLLGKKPKDFDVTTNAT-P----EQVRKLFRNC--------R 107 (472)
T ss_pred CcccCCHHHHHHH----HHHHHC--CCeEEEeChHHHHHHcCCCCCCEEEecCCC-H----HHHHHHhhhC--------e
Confidence 3445666666644 445554 688999999999999999999999999985 3 5566656421 1
Q ss_pred EecCCCCCCcceEEEEEEecCeeeeeecccccccCCCCCCcc------------cccCCHHHHHhcCCCCccceeeecCC
Q 008067 148 VIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPT------------MRFGTAEEDAYRRDLTINSLFYNINT 215 (579)
Q Consensus 148 ~i~~~~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~~~r~p~------------v~~~t~~eDl~RRDfTINAla~~~~~ 215 (579)
.| ++.|+++.|.+++..|||+++|++.++.+++.|. ..+||++|||.||||||||||||+.+
T Consensus 108 ~i------GrrF~~~hV~~~~~~iEVaTfR~~~~~~~~~~~~~~~~~~g~~~rdn~~gtieeDl~RRDFTINALayd~~~ 181 (472)
T PRK11623 108 LV------GRRFRLAHVMFGPEIIEVATFRGHHEGNESDRNTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVAD 181 (472)
T ss_pred ee------cCCCCEEEEEECCceEEEeccccccccccccccccccCCCCceecccCCCCHHHHHHhccccHHHheecCCC
Confidence 22 3567889999988999999999987665554442 34689999999999999999999999
Q ss_pred CceecCccccHHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHH
Q 008067 216 SSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEI 295 (579)
Q Consensus 216 ~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El 295 (579)
+.|+||+| |++||++|+||++|+|..+|.|||+|||||+|||++|||+|+++|.++|++. ..++.++|.|||+.|+
T Consensus 182 ~~IiD~~g-G~~DLk~riLR~IGdp~~rf~EDPlRmLRAvRFAArLgF~Ie~~T~~aI~~~---a~lL~~vs~eRI~~El 257 (472)
T PRK11623 182 FTVRDYVG-GMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRL---ATLLNDIPPARLFEES 257 (472)
T ss_pred CeEecCCC-CHHHHhCCceeecCChHhhcccchHHHHHHHHHHHHhCCCcCHHHHHHHHHH---HHHhhcCCHHHHHHHH
Confidence 99999998 9999999999999999999999999999999999999999999999999875 5777899999999999
Q ss_pred HHhhcCCCHHHHHHHHHHcCCCcEeeeCCCC
Q 008067 296 DLMVSGNQPVKAMTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 296 ~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~ 326 (579)
.|+|.++++..++++|.++|++..+| |+.
T Consensus 258 ~KlL~~~~~~~~~~lL~e~GLl~~lf--Pel 286 (472)
T PRK11623 258 LKLLQAGYGYETYKLLCEYHLFQPLF--PTI 286 (472)
T ss_pred HHHHcCCCHHHHHHHHHHcCCHHHHh--HhH
Confidence 99999999999999999999999999 985
No 8
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=100.00 E-value=3.3e-50 Score=424.81 Aligned_cols=224 Identities=26% Similarity=0.463 Sum_probs=194.8
Q ss_pred cChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecC
Q 008067 72 LTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPS 151 (579)
Q Consensus 72 l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~ 151 (579)
+++...+|+.. |+.. |+++|||||||||+|||++|+|+||+|++. + +++.+.|++. ..+
T Consensus 14 i~~~a~~Vl~~----L~~~--G~~aYlVGG~VRDlLLG~~pkD~DIat~a~-p----eei~~lf~~~--------~~i-- 72 (410)
T TIGR01942 14 FSAHALNVVER----LKGA--GYQAYIVGGAVRDLLLGIEPKDFDVVTSAT-P----EEVRKLFRNS--------RIV-- 72 (410)
T ss_pred CCHHHHHHHHH----HHHC--CCcEEEECHHHHHHHcCCCCCCEEEEcCCC-H----HHHHHHhhhC--------eec--
Confidence 56777775544 4444 588999999999999999999999999985 3 4566666421 122
Q ss_pred CCCCCcceEEEEEEecCeeeeeeccccccc---CCCCCCcc-cccCCHHHHHhcCCCCccceeeecCCCceecCccccHH
Q 008067 152 NPDQSKHLETATMKLYDLWIDFVNLRCEDY---SENSRIPT-MRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIA 227 (579)
Q Consensus 152 ~~~~~~~~~t~~~~~~~~~iD~~~~R~e~y---~~~~r~p~-v~~~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~ 227 (579)
++.++++++.+++..||++++|+|.+ ..+|+++. ..+||+++||.||||||||||||+.+++|+||+| |++
T Consensus 73 ----G~rf~~~~v~~~~~~iEvatfR~~~~~~~~~~g~~~~d~~~gtieeDl~RRDFTINALayd~~~~~IiD~~g-G~~ 147 (410)
T TIGR01942 73 ----GRRFRLVHVSFGRQIIEVATFRSGHKSSVNAEGRILKDNVYGTLEEDAWRRDFTVNALYYDPSREVIIDYVG-GME 147 (410)
T ss_pred ----CCCCCEEEEEECCEEEEEecccccccCCCCCCCCcccccccCCHHHHhhcCCchhhheeecCCCCeeeCCCC-cHH
Confidence 45678999999999999999999753 34566665 4569999999999999999999999999999998 999
Q ss_pred HhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHH
Q 008067 228 DLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA 307 (579)
Q Consensus 228 DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~ 307 (579)
||++|+||++++|..+|.|||+|||||+|||++|||+|+++|.++|++. ..++.++|.|||+.|+.|++.++++..+
T Consensus 148 DL~~~~LR~igdp~~rf~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~---a~~L~~vs~eRI~~El~Kll~~~~~~~~ 224 (410)
T TIGR01942 148 DLKNRRLRLIGDPRSRYQEDPVRMLRALRFSVKLEFTIDESTARPIRES---APLLKGIPPARLFEEILKLLFSGRSAAL 224 (410)
T ss_pred HHHCCceeecCChhhcccccHHHHHHHHHHHHHhCCCcCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999999999999999999876 5667899999999999999999999999
Q ss_pred HHHHHHcCCCcEeeeCCCC
Q 008067 308 MTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 308 l~~l~~~gll~~i~~~Pe~ 326 (579)
++.|.++|++..+| |+.
T Consensus 225 l~~L~~~gll~~lf--Pel 241 (410)
T TIGR01942 225 FRMLCGYQLLEPLF--PSV 241 (410)
T ss_pred HHHHHHcCCHHHHh--HhH
Confidence 99999999999999 985
No 9
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=8.4e-47 Score=392.26 Aligned_cols=265 Identities=21% Similarity=0.211 Sum_probs=200.0
Q ss_pred CCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeee
Q 008067 92 LETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWI 171 (579)
Q Consensus 92 ~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~i 171 (579)
.|+++|+|||||||+|||++++|+||++++.+++++ .+. +.. -+ ++.|.+. ...+..+
T Consensus 10 ~G~~~YlVGGaVRD~LLg~~~~D~D~vv~ga~pe~l----~~~----~~~------~v------G~~f~v~--l~~~~~~ 67 (364)
T PRK13297 10 AGLQVYIVGGAVRDALLGLPAGDRDWVVVGATPEDM----ARR----GFI------PV------GGDFPVF--LHPRTKE 67 (364)
T ss_pred CCCEEEEeCcHHHHHHcCCCCCCeeeeccCChHHHH----Hhc----Cce------ee------CCEEEEE--EeCCceE
Confidence 478999999999999999999999998876544433 221 100 00 1223221 1234567
Q ss_pred eeecccccccCCCCCCccccc----CCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCCCCCCcccC
Q 008067 172 DFVNLRCEDYSENSRIPTMRF----GTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDD 247 (579)
Q Consensus 172 D~~~~R~e~y~~~~r~p~v~~----~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eD 247 (579)
|++..|+|.|+.+|..+.+.. .|+++||.||||||||||||.. |.++||+| |++||++|+||+++ .+|.||
T Consensus 68 e~a~aRterk~g~g~~~f~~~~~~~~tLeeDL~RRDFTINAmA~~~~-g~liDpfg-G~~DL~~riLR~v~---~~F~ED 142 (364)
T PRK13297 68 EYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQ-GELVDPLD-GVADVRARVLRHVG---EAFAED 142 (364)
T ss_pred EEEEEEEeeccCCCCceeEEeCCCCCCHHHHHHhccceeeeeEECCC-CCEEECCC-CHHHHhCCCeeeCc---cccccC
Confidence 899999999988887665433 4999999999999999999964 78999998 99999999999995 389999
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCC
Q 008067 248 PLRVLRAIRFGARFD-FILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 248 PlRiLRa~Rfaarlg-f~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~ 326 (579)
|+||||++|||++|| |+|+++|.++|++.. ....+..+|.|||+.|+.|+|.+++|..+|+.|.++|+|..+| ||.
T Consensus 143 PLRILRa~RFaarlg~F~i~~eT~~~~~~~~-~~~~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~--Pel 219 (364)
T PRK13297 143 PVRILRLGRFAARFGDFSIAPETMQLCRRMV-EAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVM--PEL 219 (364)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh-hhcccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhC--ccc
Confidence 999999999999996 999999999998652 2234578999999999999999999999999999999999999 996
Q ss_pred CCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccH
Q 008067 327 VEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDA 406 (579)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~ 406 (579)
.. ..+.+ .+.+....+ .......+|+|+| . +. . -..+|+||++|++-.
T Consensus 220 ~~---~~~~~--------~~l~~a~~~-------~~~~~~r~a~L~~----~-~~--------~-~~~~~~rl~~p~~~~ 267 (364)
T PRK13297 220 HD---DAAVR--------AEIDRAAAA-------GLPLAGRYALLCR----H-TP--------E-RDALGRRLRAPVECM 267 (364)
T ss_pred cc---ccccc--------HHHHHHHhc-------CCChHHHHHHHHc----c-Cc--------h-HHHHHHHHCCCHHHH
Confidence 21 11111 011111111 1123467888888 1 10 0 246899999999988
Q ss_pred HHHHHHHHHHHH
Q 008067 407 ETVMNIHRVLEK 418 (579)
Q Consensus 407 ~~V~~Lv~~h~~ 418 (579)
+......+.|..
T Consensus 268 ~la~~~~~~h~~ 279 (364)
T PRK13297 268 DQARLLPLAVDA 279 (364)
T ss_pred HHHHHHHHHHHh
Confidence 877777676643
No 10
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=2.5e-44 Score=370.41 Aligned_cols=201 Identities=28% Similarity=0.356 Sum_probs=165.2
Q ss_pred CeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeeeee
Q 008067 94 TVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDF 173 (579)
Q Consensus 94 ~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~iD~ 173 (579)
+++|+|||||||+|||++|+|+||++++....++ +...+...| +.+.+. ...+..+|+
T Consensus 1 m~vYLVGGaVRD~LLgr~p~DiDivV~g~~~~~~---l~~~~~~vg-----------------~~f~V~--~~~~~~~Ei 58 (360)
T PRK13296 1 MKFYLVGGAVRDMLLGITPKDKDWVVVGATEDEM---LANGFIKIA-----------------ANFPVF--IHPQTKQEY 58 (360)
T ss_pred CcEEEeccHHHHHHcCCCCCCeeEEecCCcHHHH---HHhhhhhcC-----------------CceEEE--EECCeeEEE
Confidence 3689999999999999999999999887543221 221122111 112221 123557899
Q ss_pred ecccccccCCCCCCc-ccccC---CHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCCCCCCcccCHH
Q 008067 174 VNLRCEDYSENSRIP-TMRFG---TAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPL 249 (579)
Q Consensus 174 ~~~R~e~y~~~~r~p-~v~~~---t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPl 249 (579)
+.+|+|.|+.+|+.| +|.++ |+++||.||||||||||||++ |.++||+| |++||++|+||+++ .+|.|||+
T Consensus 59 at~R~E~~~~~g~~~~~v~~~~~~tieeDL~RRDFTINAmA~d~~-g~liDpfg-G~~DL~~kiLR~v~---~sF~EDPL 133 (360)
T PRK13296 59 ALARSEKKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQN-NKVIDPFN-GQADLQNRILRHTS---IAFIEDPL 133 (360)
T ss_pred eeccccccccCCCCCCeEeeCCCCCHHHHHHhcCcceeeeEECCC-CCEecCCC-CHHHHHCCceecCc---cccccCHH
Confidence 999999999999987 47664 799999999999999999985 78999998 99999999999973 49999999
Q ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCC
Q 008067 250 RVLRAIRFGARF---DFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 250 RiLRa~Rfaarl---gf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~ 326 (579)
|||||+|||++| ||+|+++|.++|++. +....+..+|+|||+.|+.|++.+ +..+++.|.++|++..+| ||.
T Consensus 134 RILRa~RFaarL~~~gF~ie~eT~~~i~~~-~~~~~L~~vs~ERI~~El~kiL~~--p~~~l~~L~~~glL~~lf--Pel 208 (360)
T PRK13296 134 RVVRLARFKAQLSNFNFSIAQEMLALIKEL-VKTGELNHLTRERLHIEFVKALNN--PKIFFTTLKELEALKIIF--PNI 208 (360)
T ss_pred HHHHHHHHHHHhccCCCCcCHHHHHHHHHh-hhhhhhhcCCHHHHHHHHHHHHhC--hHHHHHHHHHcCCHHHhC--cch
Confidence 999999999986 999999999999864 223556899999999999999974 667999999999999999 996
No 11
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=100.00 E-value=1.6e-32 Score=252.87 Aligned_cols=125 Identities=39% Similarity=0.531 Sum_probs=106.2
Q ss_pred CCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeee
Q 008067 92 LETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWI 171 (579)
Q Consensus 92 ~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~i 171 (579)
.|.++|+|||||||+|||++|+|+||+|++. +.++++.+.+ ..+ ..++.. .++++|+++.+++..+
T Consensus 15 ~g~~~ylVGG~VRD~Llg~~~~DiDi~v~~~-~~~~~~~l~~---~~~------~~~v~~----~~~f~t~~v~~~~~~~ 80 (139)
T cd05398 15 LGYEAYLVGGAVRDLLLGRPPKDIDIATDAD-GPEFAEALFK---KIG------GRVVGL----GEEFGTATVVINGLTI 80 (139)
T ss_pred cCceEEEECChHHHHHcCCCCCCceEEEeCC-CHHHHHHHHH---hcC------CcEEec----CCcccEEEEEECCEEE
Confidence 3689999999999999999999999999985 3344444433 222 123332 3578999999999999
Q ss_pred eeecccccccCCCCCCcccccCCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhc
Q 008067 172 DFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKH 231 (579)
Q Consensus 172 D~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~ 231 (579)
||+++|+|.|+.+++.|.+...++++||.|||||||||||+++++.++||+| |++||++
T Consensus 81 di~~~R~e~~~~~~~~p~~~~~~~~~Dl~RRDFTINAmA~~~~~~~liDp~~-G~~DL~~ 139 (139)
T cd05398 81 DVATLRTETYTDPGRRPPVVGFTIEEDLLRRDFTINAMAYDLDDGELIDPFG-GLKDLEN 139 (139)
T ss_pred EEcccccccccCCCCCCcccCCCCHHHHhhcCcchhheEecCCCCEEEeCCC-CHHHHhC
Confidence 9999999999999999998788999999999999999999999899999997 9999985
No 12
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=99.97 E-value=4.6e-32 Score=245.90 Aligned_cols=124 Identities=38% Similarity=0.469 Sum_probs=96.1
Q ss_pred EEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeeeeeec
Q 008067 96 LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVN 175 (579)
Q Consensus 96 ~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~iD~~~ 175 (579)
+|+|||||||+|||++++|+||+|++. +.++++.+.+ .. +..... .++++++++.+.+..+|+++
T Consensus 1 ~ylVGG~VRD~Llg~~~~DiDi~~~~~-~~~~~~~l~~----~~-----~~~~~~-----~~~~~~~~~~~~~~~~di~~ 65 (126)
T PF01743_consen 1 AYLVGGAVRDLLLGRPPKDIDIVTNAD-PEEFAKLLAK----KL-----GGVFVV-----GKRFGTVRVVFGGGSIDIAS 65 (126)
T ss_dssp EEEETHHHHHHHHTS--SEEEEEESS--HHHHHHHHCT----TC-----CEEEEE-----ETTTTEEEEEETTCEEEEEE
T ss_pred CEEecHHHHHHHcCCCCCCeEEEEeCC-HHHHHHHHHh----hc-----cccccc-----ccccceeeecCCCccccccc
Confidence 699999999999999999999999974 5555544432 21 111221 25668999999998899999
Q ss_pred ccccccCCCCCCcccc-c-CCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCcee
Q 008067 176 LRCEDYSENSRIPTMR-F-GTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIV 235 (579)
Q Consensus 176 ~R~e~y~~~~r~p~v~-~-~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR 235 (579)
+|.|.|..+++.|.+. + .|+++||.|||||||||||++.+++|+||+| |++||++|+||
T Consensus 66 ~r~~~~~~~~~~~~~~~~~~~i~~Dl~rRDFTiNAla~~~~~~~liDp~g-G~~DL~~~~iR 126 (126)
T PF01743_consen 66 FRGEFYIGDGRNPDVVEFGPTIEEDLKRRDFTINALAYDLETGKLIDPFG-GLEDLKNKIIR 126 (126)
T ss_dssp -ECE--SSSSS--CCCCCSSTHHHHHCTSSBGGGSEEEECTTTCEEESSS-HHHHHHTTEE-
T ss_pred cccccccccccccccccccCCHHHHHHhcCCeehheeEECCCCeEEcCCC-CHHHHHcCCCC
Confidence 9999999999999743 3 3999999999999999999999999999998 99999999997
No 13
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.86 E-value=8.6e-22 Score=222.16 Aligned_cols=177 Identities=12% Similarity=0.071 Sum_probs=139.5
Q ss_pred hhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCC-CHHHH
Q 008067 229 LKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGN-QPVKA 307 (579)
Q Consensus 229 L~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~-~~~~~ 307 (579)
+.+|.|++++++. + +||+||||+||||+++||+|+++|.++|+.. .. +.....||+..||.++|.++ ++..+
T Consensus 275 ~~~~~I~~~~~~~--~-eDPlRiLRafrfAa~~gf~I~~~Tl~~i~~~---~~-L~~~~~er~~~ef~kiL~s~~~~~~~ 347 (693)
T PRK00227 275 DANGTIALSRTPD--L-DDPALPLRVAAAAARTGLPVSESVWKRLEEC---PE-LPEPWPASAAGDFFRLLSSPVNSRRV 347 (693)
T ss_pred EECCEEEeCCCCc--c-cCHHHHHHHHHHHHhcCCCcCHHHHHHHHhh---hh-cchhhHHHHHHHHHHHHcCCCChHHH
Confidence 5789999986532 4 8999999999999999999999999999854 23 34557889999999999886 78999
Q ss_pred HHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH-HHhhc--cCCC-cccHHHHHHHhhhhcccCcccccC
Q 008067 308 MTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT-QLIGS--STFN-DDQRRLSQYAALFLPFRNTTYKDN 383 (579)
Q Consensus 308 l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~--~~~~-~e~~~ll~LAaLlhdigK~~~~~~ 383 (579)
++.|+++|+|..+| ||+. ...+..|++.+|.++++... ..+.. ..+. .+.+.+++||||||||||+.
T Consensus 348 L~~M~~~GvL~~ll--PE~~---~i~g~~Q~d~yH~ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~---- 418 (693)
T PRK00227 348 IKQMDRHGLWERIV--PEWD---RIRGLMPREPSHIHTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY---- 418 (693)
T ss_pred HHHHHHcCCHHHHh--HHHH---HHhCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC----
Confidence 99999999999999 9972 22355566666665555421 11110 1111 13567889999999999996
Q ss_pred CCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 384 KGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 384 ~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
|++|+.+|+ .+|.|||+++++++.|++||++|+.+..+
T Consensus 419 -g~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~HL~ms~~ 460 (693)
T PRK00227 419 -PRPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAEHTTLARI 460 (693)
T ss_pred -CCChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhccHhHH
Confidence 568999988 59999999999999999999999876554
No 14
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.86 E-value=3.8e-21 Score=221.94 Aligned_cols=178 Identities=13% Similarity=0.033 Sum_probs=139.5
Q ss_pred hhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCH-HHH
Q 008067 229 LKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQP-VKA 307 (579)
Q Consensus 229 L~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~-~~~ 307 (579)
+.+|.|.+. ....|.+||+||||+||||+++||+|+++|.++|+.. ...+..++.||++.||.|+|.++++ ..+
T Consensus 313 ~~~~~l~~~--~~~~~~~DplRiLRa~rfaa~lgf~I~~~T~~~i~~~---~~~l~~~~~eri~~ef~kiL~~~~~~~~~ 387 (774)
T PRK03381 313 EHAGEVVLA--RDARPARDPGLVLRVAAAAATTGLPIAAATLSRLAAS---APPLPTPWPAEARDDLLVLLGAGPAAVAV 387 (774)
T ss_pred EECCEEEeC--CccccccCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH---HHhcCccccHHHHHHHHHHHcCCCchHHH
Confidence 466777765 3479999999999999999999999999999999875 4566888999999999999988755 579
Q ss_pred HHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH-HHhh--ccCCCc-ccHHHHHHHhhhhcccCcccccC
Q 008067 308 MTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT-QLIG--SSTFND-DQRRLSQYAALFLPFRNTTYKDN 383 (579)
Q Consensus 308 l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~--~~~~~~-e~~~ll~LAaLlhdigK~~~~~~ 383 (579)
++.|+++|+|..+| ||+. ...+..|++.+|.++++... ..+. ...+.. ..+.+++||+|||||||+.
T Consensus 388 l~~m~~~GvL~~~i--PE~~---~i~~~~Q~~~~H~ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGKg~---- 458 (774)
T PRK03381 388 IEALDRTGLWGRLL--PEWE---AVRDLPPRDPVHRWTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGKGR---- 458 (774)
T ss_pred HHHHHHhCCHHHhc--hhHH---HhhCCCCCCCCccChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCC----
Confidence 99999999999999 9973 22345566666665555421 1110 011111 2456789999999999986
Q ss_pred CCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHh
Q 008067 384 KGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLS 421 (579)
Q Consensus 384 ~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~ 421 (579)
+.+|+.+|+ .++.|||+++++++.|++||++|..+..
T Consensus 459 -~~~Hs~~Ga~~a~~i~~RL~l~~~~~~~v~~LV~~Hl~~~~ 499 (774)
T PRK03381 459 -GGDHSVVGAELARQIGARLGLSPADVALLSALVRHHLLLPE 499 (774)
T ss_pred -CCChHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHhhhHHH
Confidence 457999887 5899999999999999999999976543
No 15
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.85 E-value=3.8e-21 Score=224.81 Aligned_cols=189 Identities=11% Similarity=0.027 Sum_probs=149.8
Q ss_pred eecCccccHHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcC--CCCCHHHHHHHHchHHHHHHhccC--CHHHHHH
Q 008067 218 VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFD--FILDEELKKAAASDEVKAALAAKI--SRERVGT 293 (579)
Q Consensus 218 i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlg--f~i~~~t~~ai~~~~~~~~l~~~v--s~eRi~~ 293 (579)
..|+++ |..|+++|.|+++++ ..|.+||+||||+|||+++.+ ..|+++|.++|+.. ..++..+ +.+|++.
T Consensus 339 ~~~~~~-~~~~l~~~~i~~~~~--~~f~~dP~riLr~f~~~a~~~~i~~i~~~t~~~i~~~---~~~i~~~~~~~~~~~~ 412 (895)
T PRK00275 339 TIQPLN-SRFQLRDGYIEATHP--NVFKRTPFALLEIFVLMAQHPEIKGVRADTIRLLREH---RHLIDDAFRNDIRNTS 412 (895)
T ss_pred cccccC-CCeEEECCEEEecCh--hhhhcCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHH---HHhcCchhccCHHHHH
Confidence 467887 899999999999854 679999999999999999954 46779999999875 4455665 7789999
Q ss_pred HHHHhhcCCCH-HHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH----H---HhhccC--------
Q 008067 294 EIDLMVSGNQP-VKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT----Q---LIGSST-------- 357 (579)
Q Consensus 294 El~kiL~~~~~-~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~----~---~l~~~~-------- 357 (579)
||.+||.++++ ..+|+.|+++|+|+.+| ||+. ...+..|++.+|.++++... . .+....
T Consensus 413 ~f~~iL~~~~~~~~~l~~M~~~GvL~~~i--Pe~~---~i~~~~Q~d~yH~ytVdeHtl~~v~~l~~l~~~~~~~~~p~~ 487 (895)
T PRK00275 413 LFIELFKCPIGIHRNLRRMNRYGILGRYL--PEFG---HIVGQMQHDLFHIYTVDAHTLNLIKNLRKLRYPEVSEKFPLA 487 (895)
T ss_pred HHHHHHcCCCchHHHHHHHHHcCCHHHhC--chHh---hEeeeccCcccccCcHHHHHHHHHHHHHHhhcccccccCchH
Confidence 99999999874 67899999999999999 9983 23356677777766665432 1 111100
Q ss_pred ---CCc-ccHHHHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 358 ---FND-DQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 358 ---~~~-e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
+.. +.+.+|+||+|||||||+. +++|+.+|+ .++.|||+++++++.|++||++|+.+..+
T Consensus 488 ~~l~~~l~~~~lL~lAaLlHDIGKg~-----~~~Hs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~HL~ms~~ 555 (895)
T PRK00275 488 SKLMGRLPKPELLYIAGLYHDIGKGR-----GGDHSELGAVDAEAFCQRHQLPAWDTRLVVWLVENHLLMSTT 555 (895)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCC-----CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 001 2345789999999999986 458999987 59999999999999999999999876544
No 16
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.84 E-value=3.2e-20 Score=216.12 Aligned_cols=180 Identities=13% Similarity=0.031 Sum_probs=142.7
Q ss_pred HhhcCceecCCCCCCCcccCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHchHHHHHHhccC--CHHHHHHHHHHhhcCCC
Q 008067 228 DLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARF-D-FILDEELKKAAASDEVKAALAAKI--SRERVGTEIDLMVSGNQ 303 (579)
Q Consensus 228 DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarl-g-f~i~~~t~~ai~~~~~~~~l~~~v--s~eRi~~El~kiL~~~~ 303 (579)
.+.+|.|++++ +..|.+||+||||+|||++++ | +.|++.|.++|+.. ..++..+ +.||++.||.+||..++
T Consensus 328 ~~~~~~i~~~~--~~~f~~dP~riLr~fr~aa~~~~~~~i~~~T~~~i~~~---~~~i~~~~~~~er~~~ef~~iL~~~~ 402 (856)
T PRK03059 328 VEKQGMLEIAS--DDLFERHPHAILEAFLLYQQTPGLKGLSARTLRALYNA---RDVMNAAFRRDPVNRALFMQILQQPR 402 (856)
T ss_pred EEECCEEEecC--chhhhcCHHHHHHHHHHHHhcCCccCcCHHHHHHHHHH---HHhcCcccccCHHHHHHHHHHHcCCC
Confidence 47899999984 467999999999999999998 5 69999999999875 4555666 77999999999999987
Q ss_pred H-HHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH----HH---hhccC-----------CCc-ccH
Q 008067 304 P-VKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT----QL---IGSST-----------FND-DQR 363 (579)
Q Consensus 304 ~-~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~----~~---l~~~~-----------~~~-e~~ 363 (579)
+ ..+|+.|+++|+|..+| ||+. ...+..|+..+|.++++... .. +.... +.. +.+
T Consensus 403 ~~~~~l~~m~~~GlL~~~l--Pe~~---~i~~~~Q~~~~H~ytVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~ 477 (856)
T PRK03059 403 GITHALRLMNQTSVLGRYL--PNFR---RIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRP 477 (856)
T ss_pred chHHHHHHHHHhCCHHHhC--chHh---heeeeecccccccCcHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCCh
Confidence 5 68999999999999999 9983 22355666666666655432 11 11000 000 235
Q ss_pred HHHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 364 RLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
.+++||||||||||+. |++|+..|+ .++.+||+++++++.|++||++|+.+..+
T Consensus 478 ~lL~LAaLlHDIGKg~-----~~~Hs~~GA~~A~~il~rl~l~~~~~~~V~~LV~~Hl~~~~~ 535 (856)
T PRK03059 478 WLLYVAALFHDIAKGR-----GGDHSTLGAVDARRFCRQHGLAREDAELVVWLVEHHLTMSQV 535 (856)
T ss_pred hHHHHHHHHHhhccCC-----CCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchHhHH
Confidence 6789999999999986 458999988 58999999999999999999999865543
No 17
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.83 E-value=8.3e-21 Score=222.29 Aligned_cols=182 Identities=15% Similarity=0.112 Sum_probs=141.5
Q ss_pred cHHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCH--HHHHHHHHHhhcCC
Q 008067 225 GIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISR--ERVGTEIDLMVSGN 302 (579)
Q Consensus 225 G~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~--eRi~~El~kiL~~~ 302 (579)
|+. +.+|.|++. +..+|.+||+||||+||||+++||.|+++|.++|+.. ..++..++. ||++.||.+||.++
T Consensus 316 ~f~-~~~~~l~~~--~~~~f~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~---~~~l~~~~~~~er~~~ef~~iL~~~ 389 (850)
T TIGR01693 316 GFV-EDGGELVLA--RTAVFERDPALLLRLFAIAAQRGLPIHPAALRQLTAS---LPLLPTPLREDPEARELFLELLTSG 389 (850)
T ss_pred CeE-EECCEEEec--CccchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCchhhcCHHHHHHHHHHHcCC
Confidence 443 788999987 4589999999999999999999999999999999875 455677766 99999999999876
Q ss_pred -CHHHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHH-------HHHhhcc-----------CCCc-cc
Q 008067 303 -QPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDL-------TQLIGSS-----------TFND-DQ 362 (579)
Q Consensus 303 -~~~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l-------~~~l~~~-----------~~~~-e~ 362 (579)
++..+++.|+++|+|..+| ||+.. ..+..|++.+|.++++.. +..+... .+.. +.
T Consensus 390 ~~~~~~l~~m~~~gvL~~~i--Pe~~~---i~~~~Q~~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (850)
T TIGR01693 390 NGTVRALRAMNRAGVLGRFL--PEWGR---IVGQMQFDLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIED 464 (850)
T ss_pred CchHHHHHHHHHhCCHHHhC--chHhh---heeccccCceeecchhHHHHHHHHHHHHHhccccccccccHHHHHhccCC
Confidence 5688999999999999999 99832 123445555555444431 1111100 0111 24
Q ss_pred HHHHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 363 RRLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
+.+++|||||||+||+. +++|+..|+ .+|.+|++++++++.|++||++|..+...
T Consensus 465 ~~~L~lAaLlHDiGKg~-----~~~H~~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl~~~~~ 523 (850)
T TIGR01693 465 PELLYLAALLHDIGKGR-----GGDHSVLGAEDARDVCPRLGLDRPDTELVAWLVRNHLLMSIT 523 (850)
T ss_pred HHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 56789999999999985 457998887 58999999999999999999999876543
No 18
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.81 E-value=7.1e-20 Score=215.89 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=135.6
Q ss_pred hhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhcc-----CCHHHHHHHHHHhhcCCC
Q 008067 229 LKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAK-----ISRERVGTEIDLMVSGNQ 303 (579)
Q Consensus 229 L~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~-----vs~eRi~~El~kiL~~~~ 303 (579)
+.+|.|+++. +..|.+||+||||+||||+++||.|+++|.++|+.. ..++.. .+.+|++.|+ ++..++
T Consensus 384 ~~~~~i~~~~--~~~f~edPlriLR~fr~aa~~~~~i~~~T~~~i~~~---~~~i~~~~~~~~~~~r~f~ei--l~~~~~ 456 (931)
T PRK05092 384 VDNGRINLAD--PDVFERDPVNLIRLFHLADRHGLDIHPDAMRLVTRS---LRLIDAALREDPEANRLFLDI--LTSRRN 456 (931)
T ss_pred EECCEEEecC--hhhhhhCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcChhhccCHHHHHHHHHH--HcCCCc
Confidence 5788999883 478999999999999999999999999999999875 333333 4678888876 344557
Q ss_pred HHHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHH-------HHHhhcc-----------CCC-cccHH
Q 008067 304 PVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDL-------TQLIGSS-----------TFN-DDQRR 364 (579)
Q Consensus 304 ~~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l-------~~~l~~~-----------~~~-~e~~~ 364 (579)
+..+++.|+++|+|+.+| ||+. ...+..|++.+|.++++.. +..+... .+. -+.+.
T Consensus 457 ~~~~l~~m~~~GvL~~~i--Pef~---~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (931)
T PRK05092 457 PERVLRRMNEAGVLGRFI--PDFG---RIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRR 531 (931)
T ss_pred hHHHHHHHHHhCChHHhc--ccHH---hcccccccccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHH
Confidence 789999999999999999 9983 2234556666666655532 1111100 011 12456
Q ss_pred HHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 365 LSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 365 ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
+++||||||||||+. +++|+..|+ .+|.||++++++++.|+|||++|..+..+
T Consensus 532 ~L~lAaLlHDIGKg~-----~~dHs~~Ga~~a~~~~~rl~l~~~~~~~v~~LV~~Hl~ms~~ 588 (931)
T PRK05092 532 ALYVAVLLHDIAKGR-----PEDHSIAGARIARRLCPRLGLSPAETETVAWLVEHHLLMSDT 588 (931)
T ss_pred HHHHHHHHHHhhcCC-----CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHHhHH
Confidence 789999999999985 457999988 58999999999999999999999865543
No 19
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.80 E-value=2.5e-19 Score=208.90 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=137.6
Q ss_pred HhhcCceecCCCCCCCcccCHHHHHHHHHHHHHc-CCCCCHHHHHHHHchHH-HHHHhccCCHHHHHHHHHHhhcCCCH-
Q 008067 228 DLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARF-DFILDEELKKAAASDEV-KAALAAKISRERVGTEIDLMVSGNQP- 304 (579)
Q Consensus 228 DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarl-gf~i~~~t~~ai~~~~~-~~~l~~~vs~eRi~~El~kiL~~~~~- 304 (579)
.+.+|.|.+. .+..|.+||+||||+|||++++ ||+|+++|.++|+...- ....+..++.+| .||.+||.++++
T Consensus 325 ~~~~~~i~~~--~~~~f~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~~~~~~l~~~~~eR--~ef~kiL~~~~~~ 400 (854)
T PRK01759 325 YLINNAICLR--NPDCFEQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALEQLQQPLCELPAAR--ERFLRLFNQPNAI 400 (854)
T ss_pred EEECCEEEec--ChhhhhhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHhccchhccCHHHH--HHHHHHHcCCCch
Confidence 3678888876 3479999999999999999999 69999999998875310 012223567777 899999998765
Q ss_pred HHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH----H---Hhhc-----------cCCCc-ccHHH
Q 008067 305 VKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT----Q---LIGS-----------STFND-DQRRL 365 (579)
Q Consensus 305 ~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~----~---~l~~-----------~~~~~-e~~~l 365 (579)
..+++.|+++|+|+.+| ||+. ...+..|++.+|.++++... . .+.. ..+.. +.+.+
T Consensus 401 ~~~l~~M~~~GvL~~~i--Pe~~---~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (854)
T PRK01759 401 KRALVPMHQYGVLTAYL--PQWK---GIVGLMQFDLFHIYTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTL 475 (854)
T ss_pred HHHHHHHHHhCCHHHhC--hHHH---heeeccCCcccccCcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHH
Confidence 68999999999999999 9983 22355666667766655421 1 1100 00111 34667
Q ss_pred HHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 366 SQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 366 l~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
|+||||||||||+. +++|+..|+ .++.|||+++++++.|++||++|+.+..+
T Consensus 476 L~lAaLlHDIGKG~-----~~dHs~~Ga~~a~~i~~rl~l~~~~~~~v~~LV~~Hl~ms~~ 531 (854)
T PRK01759 476 LYIAALFHDIAKGR-----GGDHAELGAVDMRQFAQQHGFDQREIETMAWLVQQHLLMSVT 531 (854)
T ss_pred HHHHHHHHhhcCCC-----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999986 457999988 58999999999999999999999876644
No 20
>PHA01806 hypothetical protein
Probab=99.77 E-value=9.9e-19 Score=164.19 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=70.5
Q ss_pred HHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcc-C-----CceE-EecCCCCCC
Q 008067 84 LNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETA-P-----SGFG-VIPSNPDQS 156 (579)
Q Consensus 84 ~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~-~-----~~~~-~i~~~~~~~ 156 (579)
+..+++. |.++|+|||+|||+|||++|+|+||+|.+..++++ +.+.+ ..|... | ++.. -...+-+..
T Consensus 28 ~~~l~~~--g~~aYlVGG~VRD~Llgr~~kDiDivt~~~~pe~v-~~L~~---klG~k~V~~~~~~ggwr~~~~~~gd~~ 101 (200)
T PHA01806 28 LYSDARH--SEGVALAGGAARDLMHGAEPKDIDIALYGMDDRQA-ELLIG---CILPKLVSRFLRDGGWSQEYHDGGDGG 101 (200)
T ss_pred HHHHHHC--CcEEEEECchHHHHHcCCCCCceEEEccCCCHHHH-HHHHH---HhCCcccccccccceeeeecccccccc
Confidence 4445554 58999999999999999999999999987766544 33333 222111 0 1100 000000000
Q ss_pred cceEEE----EEEecCeeeeeecccccccCCCCCCcccccCCHHHHHhcCCCCcc--ceeeecC
Q 008067 157 KHLETA----TMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTIN--SLFYNIN 214 (579)
Q Consensus 157 ~~~~t~----~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTIN--Ala~~~~ 214 (579)
-..+.+ .+.+++.++||+..+++ ++++||.||||||| ||||++.
T Consensus 102 ~~~~~~~l~g~~vl~g~tvD~A~~~g~--------------sleeDL~rRDFTINq~AIA~~~~ 151 (200)
T PHA01806 102 IFKGVVSLKGCRGLEGMDVDFNYYDTD--------------SVGEVMESFDYTINQVGIAYNWP 151 (200)
T ss_pred ccccceeeeeeEEeCCeEEEeeeccCC--------------CHHHHHHHcCCccchhhhcccCC
Confidence 000111 14567889999987643 79999999999999 8888865
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.73 E-value=8.6e-18 Score=196.74 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=137.7
Q ss_pred cHHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcC--CCCCHHHHHHHHchHHHHHHhc-cC-CHHHHHHHHHHhhc
Q 008067 225 GIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFD--FILDEELKKAAASDEVKAALAA-KI-SRERVGTEIDLMVS 300 (579)
Q Consensus 225 G~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlg--f~i~~~t~~ai~~~~~~~~l~~-~v-s~eRi~~El~kiL~ 300 (579)
|+ -+.+|+|+++++ ..|.+||+||||+|||+++.+ ..|+++|.++|+.. ..++. .. ..++++.||.+||.
T Consensus 347 ~f-~~~~~~i~~~~~--~~f~~dp~~iLr~f~~aa~~~~i~~i~~~t~~~i~~~---~~~i~~~~~~~~~~~~~f~~iL~ 420 (884)
T PRK05007 347 EF-QLRGTLIDLRDE--TLFQRQPEAILRMFYLMARNSNITGIYSTTLRQLRHA---RRHLNQPLCEIPEARKLFMEILR 420 (884)
T ss_pred Ce-EEECCEEeecCh--hhhhhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHH---HHhcCcccccCHHHHHHHHHHHc
Confidence 44 367888999864 569999999999999999955 35779999999875 33333 22 35679999999999
Q ss_pred CCCHH-HHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH-------HHhhcc-----------CCCc-
Q 008067 301 GNQPV-KAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT-------QLIGSS-----------TFND- 360 (579)
Q Consensus 301 ~~~~~-~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~-------~~l~~~-----------~~~~- 360 (579)
++++. .+++.|+++|+|..+| ||+.. ..+..|++.+|.++++... ..+... .+..
T Consensus 421 ~~~~~~~~l~~m~~~GlL~~~i--Pe~~~---i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 495 (884)
T PRK05007 421 HPGAVSRALLPMHRHSVLSAYM--PQWSH---IVGQMQFDLFHAYTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRL 495 (884)
T ss_pred CCCchHHHHHHHHHhCCHHHhC--chHhh---eeeccccCccccCcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhc
Confidence 98886 5999999999999999 99832 2255666666655554321 111110 0001
Q ss_pred ccHHHHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 361 DQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 361 e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
+.+.+++||||||||||+. +++|+..|+ .++.+||+++++++.|++||++|+.+...
T Consensus 496 ~~~~lL~lAaLlHDIGKg~-----~~dHs~~Ga~~a~~il~rl~l~~~~~~~v~~LV~~Hl~~~~~ 556 (884)
T PRK05007 496 PKKELLLLAALFHDIAKGR-----GGDHSILGAQDALEFAELHGLNSRETQLVAWLVRNHLLMSVT 556 (884)
T ss_pred CChhHHHHHHHHHhhcCCC-----CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhHH
Confidence 3456789999999999986 458999988 58999999999999999999999876543
No 22
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.68 E-value=7.2e-17 Score=187.98 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=138.3
Q ss_pred hhcCceecCCCCCCCcccCHHHHHHHHHHHHHcC--CCCCHHHHHHHHchHHHHHHhcc--CCHHHHHHHHHHhhcCCCH
Q 008067 229 LKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFD--FILDEELKKAAASDEVKAALAAK--ISRERVGTEIDLMVSGNQP 304 (579)
Q Consensus 229 L~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlg--f~i~~~t~~ai~~~~~~~~l~~~--vs~eRi~~El~kiL~~~~~ 304 (579)
+.+|.|.+. .+..|.+||..|||+|..+++.+ ..|++.|.++++.. ...+.. ...+|++.||.+||.++++
T Consensus 339 ~~~~~i~~~--~~~~f~~~P~~il~lf~~~~~~~~~~~i~~~t~r~l~~~---~~~l~~~~~~~~ri~~ef~kiL~~~~~ 413 (869)
T PRK04374 339 LRRGYLAAD--ADSWPDGDVLQVFALFAQWAAHREVRGLHSLTARALAEV---LRDLPAYDVADATARERFMALLRGPRA 413 (869)
T ss_pred EECCEEeec--CcccchhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHH---HHhcCccccCCHHHHHHHHHHHcCCCh
Confidence 345566654 34799999999999999999999 89999999999865 223332 2678999999999999999
Q ss_pred HHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH-------HHhhc-----------cCCCc-ccHHH
Q 008067 305 VKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT-------QLIGS-----------STFND-DQRRL 365 (579)
Q Consensus 305 ~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~-------~~l~~-----------~~~~~-e~~~l 365 (579)
..+++.|+++|+|..+| ||+. ...+..|++.+|.++++... ..+.. +.+.. +.+.+
T Consensus 414 ~~~l~~m~~~GvL~~~l--PE~~---~i~~~~Q~d~yH~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l 488 (869)
T PRK04374 414 VETLNRMARLGVLGQWI--PAFA---SVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPEL 488 (869)
T ss_pred hHHHHHHHHhCCHHHHh--hhHH---HHhccccccCccCCcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccH
Confidence 89999999999999999 9983 23355666667666555321 11110 00111 23557
Q ss_pred HHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 366 SQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 366 l~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
|+||+|||||||+. +++|+.+|+ .++.|||+++++++.|++||++|+.+..+
T Consensus 489 L~lAaLlHDIGKg~-----~~dHs~~Ga~~a~~i~~Rl~l~~~~~~~v~~LV~~Hl~m~~~ 544 (869)
T PRK04374 489 LLLAGLFHDIAKGR-----GGDHSELGAVDARAFCLAHRLSEGDTELVTWLVEQHLRMSVT 544 (869)
T ss_pred HHHHHHHHhccCCC-----CCChHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHH
Confidence 89999999999986 458999988 58999999999999999999999876654
No 23
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.1e-16 Score=175.70 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=138.5
Q ss_pred hcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCC-CHHHHHHHHchHHHHHHhc-cC-CHHHHHHHHHHhhcCC-CHH
Q 008067 230 KHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFIL-DEELKKAAASDEVKAALAA-KI-SRERVGTEIDLMVSGN-QPV 305 (579)
Q Consensus 230 ~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i-~~~t~~ai~~~~~~~~l~~-~v-s~eRi~~El~kiL~~~-~~~ 305 (579)
.+|.|..-. ..-|..||..|||.|-++++.|... +++|+.++... ..++. .. ..+....-|..||+.+ ++.
T Consensus 337 ~~g~I~l~~--~~~f~~dP~~ilrlf~~~~~~~~~~~~~~Tlr~L~~a---~~~l~~~l~~~peA~~~Fl~il~~~~~~~ 411 (867)
T COG2844 337 RNGRIELRD--PDLFERDPEAILRLFAIMAQTGLITGHPDTLRQLRRA---LRLLNQPLREDPEARRLFLSILRSPNAIR 411 (867)
T ss_pred eCCEEEecC--chhhhhChHHHHHHHHHHHhcCCcccchHHHHHHHHh---ccccCcccccCHHHHHHHHHHHhCCCcHH
Confidence 567777652 4789999999999999999999888 79999998754 23332 22 2355566777888776 558
Q ss_pred HHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH-H------Hhh-----------ccCCCc-ccHHHH
Q 008067 306 KAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT-Q------LIG-----------SSTFND-DQRRLS 366 (579)
Q Consensus 306 ~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~-~------~l~-----------~~~~~~-e~~~ll 366 (579)
.+|+.|+++|+|+.++ |++ +.++ +.+|++++|.|++++.. . .+. .++++. +.+.+|
T Consensus 412 r~l~~Mn~~GVLgryl--Pew-~~Iv--g~MQfdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elL 486 (867)
T COG2844 412 RTLRPMNRYGVLGRYL--PEW-GKIV--GLMQFDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELL 486 (867)
T ss_pred HHHHHHHHhhhHHHhc--ccH-Hhhh--cccccCcceecchhHHHHHHHHHHHHhhcccccccCccHHhhccCCCChhHH
Confidence 9999999999999999 998 3343 77899999988877532 1 111 012222 456889
Q ss_pred HHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHHhh
Q 008067 367 QYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFLSL 422 (579)
Q Consensus 367 ~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~~l 422 (579)
++|||||||||+. |++|++.|+ .+|.++|++.+|+++|+|||++|..+.-.
T Consensus 487 ylAaLfHDIaKGR-----ggDHs~lGA~~a~~fc~~hGL~~~e~~lvaWLVe~HLlMS~t 541 (867)
T COG2844 487 YLAALFHDIAKGR-----GGDHSILGAEDARRFCERHGLNSRETELVAWLVENHLLMSVT 541 (867)
T ss_pred HHHHHHHHhhcCC-----CCchHHhhHHHHHHHHHHcCCCHHHhHHHHHHHHHHHHhHHH
Confidence 9999999999998 789999998 58999999999999999999999876543
No 24
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=99.23 E-value=1e-10 Score=108.97 Aligned_cols=51 Identities=31% Similarity=0.513 Sum_probs=40.9
Q ss_pred CCcccccCcc-cChHHHHHHcCCCCCCchHHHHHHHHHHHHHcCCCCCHHHHH
Q 008067 514 LDEVWDLKPL-VNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSGTAEECI 565 (579)
Q Consensus 514 L~~a~~~KPL-LnGkdIm~~Lglk~pGP~vg~~l~~llewQL~~P~~t~ee~l 565 (579)
-..+++.++| |||+|||+.||++ ||||+|++++.+.+++++||..|.+|++
T Consensus 94 ~l~i~~~~~LaI~G~DLi~~lg~~-pGp~iG~iL~~l~~~vl~~~i~N~~e~L 145 (149)
T PF13735_consen 94 QLPIHSLKDLAINGNDLIEALGIK-PGPWIGEILERLLEAVLEGPIPNEKEAL 145 (149)
T ss_dssp TSS-SSGGG-SS-HHHHHHHHT---SSCHHHHHHHHHHHHHTTTSS-SSHHHH
T ss_pred cCCCCCcccCCcCHHHHHHHcCCC-CCcHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 3456788887 9999999999999 9999999999999999999999987776
No 25
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=99.01 E-value=2.2e-10 Score=91.28 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=53.3
Q ss_pred CCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCC
Q 008067 262 DFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQ 326 (579)
Q Consensus 262 gf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~ 326 (579)
||+|+++|.++|++. ..++.++|+|||+.|+.|||.++++..+++.|.++|++..+| |+.
T Consensus 1 gF~ie~~t~~ai~~~---~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~if--P~l 60 (64)
T PF12627_consen 1 GFKIEPETEEAIKEN---AELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIF--PEL 60 (64)
T ss_dssp T-EE-HHHHHHHHHH---GGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHS--TTH
T ss_pred CCccCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHC--ccc
Confidence 899999999999976 457789999999999999999999999999999999999999 985
No 26
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=95.06 E-value=0.26 Score=43.33 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCC----hHHHHHHHHHHHHhcCCccCCceEEecCC
Q 008067 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMM----GSEFATKVAEYLSATGETAPSGFGVIPSN 152 (579)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~----~~~f~~~~~~~~~~~g~~~~~~~~~i~~~ 152 (579)
+.+++.|.+++++.....++|+.|.++....+ +..|+|+++.... ..++...+.+.++..+. . ..+..+.
T Consensus 3 ~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~--~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~-~-~~~~~i~-- 76 (114)
T cd05402 3 EEVLDRLQELIKEWFPGAKLYPFGSYVTGLGL--PGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGE-V-VEVEPII-- 76 (114)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecccccCCCC--CCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCC-c-eeeEEec--
Confidence 46788888888887778899999999997644 6789999997753 35566677777766542 1 1222222
Q ss_pred CCCCcceEEEEEEec--Ceeeeeec
Q 008067 153 PDQSKHLETATMKLY--DLWIDFVN 175 (579)
Q Consensus 153 ~~~~~~~~t~~~~~~--~~~iD~~~ 175 (579)
.......++... |..+|++-
T Consensus 77 ---~ArVPiik~~~~~~~i~~Dis~ 98 (114)
T cd05402 77 ---NARVPIIKFVDKPTGIEVDISF 98 (114)
T ss_pred ---cCCCCEEEEEEcCCCeEEEEEc
Confidence 123456666666 78888774
No 27
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=93.92 E-value=0.37 Score=45.23 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred CeEEEechhhHhhhhCC--CCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCeee
Q 008067 94 TVLRVAGGWVRDKLLGK--DCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWI 171 (579)
Q Consensus 94 ~~~~lVGG~VRD~LLg~--~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~i 171 (579)
.-.|.+||.+.=.+-|. .|+||||-|+... ++++.+.|+..+...+. ........++|+- +.++|..|
T Consensus 17 ~i~W~lgGS~~L~l~Gl~~~p~DIDI~~D~~d----~e~i~~il~~~~~~~~~----~~~~~~~ts~F~e--~~I~gv~V 86 (156)
T cd07749 17 NVNWALTGSLSFALQGVPVEPHDIDIQTDNEG----AYEIERIFHEFVNTEVR----FSESEGIRSHFGE--LQIDGIKV 86 (156)
T ss_pred CceEEehhhHHHHHcCCCCCCCcceEEEchhh----HHHHHHHHHHhccCCCc----cCCCCceeeeeeE--EEECCEEE
Confidence 34699999999999996 5899999998753 46677777776543310 0000111245543 45688888
Q ss_pred eeec
Q 008067 172 DFVN 175 (579)
Q Consensus 172 D~~~ 175 (579)
|+..
T Consensus 87 dvmg 90 (156)
T cd07749 87 EIMG 90 (156)
T ss_pred EEee
Confidence 8653
No 28
>PF06042 DUF925: Bacterial protein of unknown function (DUF925); InterPro: IPR009267 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2LA3_A.
Probab=93.74 E-value=0.76 Score=43.59 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=57.5
Q ss_pred HHHHhcCCCCeEEEechhhHhh----hhCCCC----CCeEEEEcCC--ChHHHHHHHHHHHHhcCCccCCceEEecCCCC
Q 008067 85 NTLRHFNLETVLRVAGGWVRDK----LLGKDC----YDIDIALDNM--MGSEFATKVAEYLSATGETAPSGFGVIPSNPD 154 (579)
Q Consensus 85 ~~~~~~~~~~~~~lVGG~VRD~----LLg~~~----~DiDi~~~~~--~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~ 154 (579)
+++++.|+ .+.||++|+||.. |-|+++ +|||++--.. ...+--..+.+.+.+.-. ++
T Consensus 2 ~~~~~L~L-pd~~l~AG~vrn~VWn~L~g~~~~~~i~DiDviYfD~~d~s~e~e~~~e~~l~~~~p----~~-------- 68 (163)
T PF06042_consen 2 EIVRSLGL-PDWWLAAGFVRNTVWNHLHGRPPSTPINDIDVIYFDPSDLSYEAEDAIEARLRALFP----GY-------- 68 (163)
T ss_dssp HHHHHT---SS-EEETHHHHHHHHGGGTTS-TT---SEEEEEE--T-TS-HHHHHHHHHHHHHH-T----TS--------
T ss_pred chHhhCCC-CceEeehhhHHHHHHHHhcCCCCCCCCCceeEEEeCCCCCCHHHHHHHHHHHHHhCC----CC--------
Confidence 45566665 4689999999965 677776 8999998543 222222233333333211 11
Q ss_pred CCcceEEEEEEecCeeeeeec-ccccccCCCCCCcccccCCHHHHHhcCCC-CccceeeecC-CC--ceecCccccHHHh
Q 008067 155 QSKHLETATMKLYDLWIDFVN-LRCEDYSENSRIPTMRFGTAEEDAYRRDL-TINSLFYNIN-TS--SVEDLTGRGIADL 229 (579)
Q Consensus 155 ~~~~~~t~~~~~~~~~iD~~~-~R~e~y~~~~r~p~v~~~t~~eDl~RRDf-TINAla~~~~-~~--~i~D~~g~G~~DL 229 (579)
.+|+.| .|-.....+- -| + +=-+|+..+-- |.-|++..++ +| +++=|+ |++||
T Consensus 69 ---------------~weVkNQArmHl~~~~~-~p---y-~S~~dAi~~wpe~~Tavgvrl~~~~~~~l~AP~--GL~dl 126 (163)
T PF06042_consen 69 ---------------PWEVKNQARMHLWNGDK-PP---Y-TSTEDAISRWPETATAVGVRLNEDGQLELYAPF--GLDDL 126 (163)
T ss_dssp ---------------EEEEEESTTTTSSSSS---------SSHHHHHTTSSSTTTS-EEE--TTS--EEE-TT---THHH
T ss_pred ---------------CEEEEeeeeeeeecCCC-CC---c-ccHHHHHHhcchhheEEEEEECCCCcEEEEccc--ChHHH
Confidence 112211 1211111110 01 1 22477887774 7888888887 33 577887 89999
Q ss_pred hcCceec
Q 008067 230 KHGKIVT 236 (579)
Q Consensus 230 ~~g~IR~ 236 (579)
.+++||.
T Consensus 127 f~~~vrp 133 (163)
T PF06042_consen 127 FALRVRP 133 (163)
T ss_dssp HTTEE--
T ss_pred hCCEEee
Confidence 9999994
No 29
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=92.07 E-value=0.36 Score=48.36 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=38.3
Q ss_pred cHHHHHHHhhhhcccCcccccC-CCCcccchHH----HHHHHc-CCCcccHHHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYKDN-KGKKIPVVNY----TFRDSL-KRKASDAETVMNIHRVLE 417 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~~~-~gk~h~~~~~----~i~~rL-kl~~~d~~~V~~Lv~~h~ 417 (579)
...++++||||||||+...... .+..+.+.|+ .+.... +++.+.++.|...|..|.
T Consensus 81 D~evl~lAALLHDIG~~~~~~~~~~~~fe~~ga~~A~~~L~~~~G~~~~~~~~V~~aI~~H~ 142 (228)
T TIGR03401 81 SDETWFLTCLLHDIGTTDENMTATKMSFEFYGGILALDVLKEQTGANQDQAEAVAEAIIRHQ 142 (228)
T ss_pred CHHHHHHHHHHHhhccccccCCcccCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 3567899999999998432111 1122333443 455666 999999999999999884
No 30
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=91.43 E-value=0.3 Score=46.38 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=35.9
Q ss_pred cHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
....+.+|||||||||... .+..|+..|+.++..++++.. +..++..|
T Consensus 40 d~~~l~~aaLLHDIGK~~~---~~~~H~~~G~~iL~~~g~~~~----i~~iI~~H 87 (164)
T TIGR00295 40 DMDLVLKGALLHDIGRART---HGFEHFVKGAEILRKEGVDEK----IVRIAERH 87 (164)
T ss_pred CHHHHHHHHHHhcCCcccC---CCCCHHHHHHHHHHHcCCCHH----HHHHHHHH
Confidence 4467889999999999864 245799999999999999743 44444554
No 31
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=91.09 E-value=0.4 Score=35.94 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEc
Q 008067 79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALD 120 (579)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~ 120 (579)
+.+.+.+.++.......+|+.|.++|... .+..||||++.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~lfGS~arg~~--~~~SDIDi~v~ 42 (49)
T cd05397 3 LLDIIKERLKKLVPGYEIVVYGSLVRGLL--KKSSDIDLACV 42 (49)
T ss_pred HHHHHHHHHHhhcCCcEEEEECCcCCCCC--CCCCCEEEEEE
Confidence 34445566655544678999999999765 56789999985
No 32
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=90.79 E-value=0.39 Score=45.25 Aligned_cols=55 Identities=27% Similarity=0.467 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEechhhHhhhhCCC---CCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 008067 79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD---CYDIDIALDNMMGSEFATKVAEYLSATG 139 (579)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~---~~DiDi~~~~~~~~~f~~~~~~~~~~~g 139 (579)
+...|++++... +...||.|||-=|.++|+. -.||||.+.... . ..+.+.++..|
T Consensus 8 ~I~~Il~~~~~~--~i~~wi~GGWaiD~~lG~qTReH~DiDi~~~~~~---~-~~l~~~L~~~G 65 (174)
T PF10706_consen 8 LIHEILDAADEL--GIPWWIAGGWAIDALLGRQTREHRDIDIFVPRED---Q-AELRALLKELG 65 (174)
T ss_dssp --------HHHT--T--EEEEHHHHHHHHHTS--S--SEEEEEEEGGG---H-HHHHHHHHHTT
T ss_pred cchhhhhhHhhC--CCCEEEECceeeeEeccccccCcCCeEEEEEcch---h-HHHHHHHHHCC
Confidence 344566777775 4789999999999999975 479999997653 2 34556666655
No 33
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=90.62 E-value=0.35 Score=48.30 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=43.8
Q ss_pred chhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCC
Q 008067 336 EMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRK 402 (579)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~ 402 (579)
.+++..|...++.+...+... . +....+...||||||||+....+. ++.|...|+.++..++.+
T Consensus 34 ~~~~l~H~~~Va~lA~~Ia~~-~-g~D~~l~~~aaLLHDIg~~~~~~~-~~~h~~~gae~a~~~~~~ 97 (222)
T COG1418 34 GQHVLEHSLRVAYLAYRIAEE-E-GVDPDLALRAALLHDIGKAIDHEP-GGSHAEIGAEIARKFLED 97 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHhhccccccCC-ccchHHHHHHHHHHHccc
Confidence 345666666666555544322 1 124567788999999999975433 345999999999998887
No 34
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.68 E-value=2.7 Score=40.06 Aligned_cols=39 Identities=33% Similarity=0.553 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCeEEEechhhHhh----hhCCC----CCCeEEEEcC
Q 008067 82 CLLNTLRHFNLETVLRVAGGWVRDK----LLGKD----CYDIDIALDN 121 (579)
Q Consensus 82 ~l~~~~~~~~~~~~~~lVGG~VRD~----LLg~~----~~DiDi~~~~ 121 (579)
.+++++.+.|+. ..|||+|+||.. |-|.. .+|||++--.
T Consensus 19 ~~L~~v~~L~LP-~~~laaGsV~n~VWn~l~gn~~~~~ikDiDv~yFD 65 (184)
T COG3575 19 AILDTVRQLGLP-DWWLAAGSVRNTVWNHLFGNNPMTGIKDIDVIYFD 65 (184)
T ss_pred HHHHHHHHcCCc-hhhhhhhHHHHHHHHHhcCCCCCCCcccceEEEec
Confidence 456677777753 579999999965 55665 4899998743
No 35
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.53 E-value=1.1 Score=47.42 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=35.8
Q ss_pred cHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...++..|||||||||... .+..|+..|+.++..++++. .+..++++|
T Consensus 209 D~~ll~aAALLHDIGK~k~---~~~~H~~~Ga~iL~e~G~~e----~i~~iIe~H 256 (339)
T PRK12703 209 DRRLVAAGALLHDIGRTKT---NGIDHAVAGAEILRKENIDD----RVVSIVERH 256 (339)
T ss_pred CHHHHHHHHHHHhcccccc---cCCCHHHHHHHHHHHCCCCH----HHHHHHHHH
Confidence 3456788999999999864 23469999998888899975 455555655
No 36
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=88.72 E-value=0.31 Score=39.21 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=33.1
Q ss_pred HHHHHHhhhhcccCcccccC-CCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 364 RLSQYAALFLPFRNTTYKDN-KGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~~~-~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
..+.+|+||||+|+...... ....|+..|+.+...++++. .+...++.|
T Consensus 28 ~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~~~~~----~~~~~I~~H 77 (80)
T TIGR00277 28 ELARRGALLHDIGKPITREGVIFESHAVVGAEIARKYGEPL----EVIDIIAEH 77 (80)
T ss_pred HHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHcCCCH----HHHHHHHHH
Confidence 45889999999999865321 02468888888888887663 444444443
No 37
>PRK10119 putative hydrolase; Provisional
Probab=88.32 E-value=0.95 Score=45.48 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=47.4
Q ss_pred hhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCc-ccccCCCCcccchHH----HHHHH--cCCCcccHHHH
Q 008067 337 MFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNT-TYKDNKGKKIPVVNY----TFRDS--LKRKASDAETV 409 (579)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~-~~~~~~gk~h~~~~~----~i~~r--Lkl~~~d~~~V 409 (579)
.|+..|+..++.+...+... .+....++.+||+|||++.. ..... ...++..++ .+... .+++.+.++.|
T Consensus 24 ~HD~~Hi~RV~~lA~~Ia~~--e~~D~~vv~lAAlLHDv~d~~k~~~~-~~~~~~~~a~~a~~~L~~~~~g~~~~~i~~V 100 (231)
T PRK10119 24 AHDICHFRRVWATAQKLAAD--DDVDMLVVLTACYFHDIVSLAKNHPQ-RHRSSILAAEETRRILREDFPDFPAEKIEAV 100 (231)
T ss_pred ccChHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHhhcchhhhcCcc-ccchhhHHHHHHHHHHHHcccCcCHHHHHHH
Confidence 45667777777666555321 11245678899999999763 11100 001222222 34555 79999999999
Q ss_pred HHHHHHH
Q 008067 410 MNIHRVL 416 (579)
Q Consensus 410 ~~Lv~~h 416 (579)
..+|.+|
T Consensus 101 ~~iI~~~ 107 (231)
T PRK10119 101 CHAIEAH 107 (231)
T ss_pred HHHHHHc
Confidence 9999886
No 38
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=87.88 E-value=1.1 Score=49.15 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=48.0
Q ss_pred HHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhcc---CCCcccHHHHHHHhh
Q 008067 295 IDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSS---TFNDDQRRLSQYAAL 371 (579)
Q Consensus 295 l~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~e~~~ll~LAaL 371 (579)
+.+++..+ +.+=|+.+.++|+-..+| |.- +....+ ||..-.+-+..+.+.+... .+..+.+.++.+|||
T Consensus 20 i~~LIdT~-~FQRLRrIkQLG~a~lvy--PgA-nHTRFe----HSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AAL 91 (421)
T COG1078 20 ILELIDTP-EFQRLRRIKQLGLAYLVY--PGA-NHTRFE----HSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAAL 91 (421)
T ss_pred HHHHhCCH-HHHHHHHhhhccceeEec--CCC-cccccc----hhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence 34445444 778899999999999999 873 112111 3333333344444444311 122245567899999
Q ss_pred hhcccCccc
Q 008067 372 FLPFRNTTY 380 (579)
Q Consensus 372 lhdigK~~~ 380 (579)
|||||.+.+
T Consensus 92 LHDIGHgPF 100 (421)
T COG1078 92 LHDIGHGPF 100 (421)
T ss_pred HHccCCCcc
Confidence 999999876
No 39
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=87.66 E-value=0.34 Score=41.96 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=34.2
Q ss_pred ccHHHHHHHhhhhcccCccccc---C----C--CCcccchHHHH----HHHcCCCcccHHHHHHHHHHHH
Q 008067 361 DQRRLSQYAALFLPFRNTTYKD---N----K--GKKIPVVNYTF----RDSLKRKASDAETVMNIHRVLE 417 (579)
Q Consensus 361 e~~~ll~LAaLlhdigK~~~~~---~----~--gk~h~~~~~~i----~~rLkl~~~d~~~V~~Lv~~h~ 417 (579)
....++.+||||||+||..... + . ...|+..|+.+ ....+++ .+.+..+|..|.
T Consensus 23 ~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~~~~~~~~---~~~i~~~i~~H~ 89 (122)
T PF01966_consen 23 EDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEILKEFLKELGLP---IEIIANAIRYHH 89 (122)
T ss_dssp HHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHC---HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHHHHHhhhhcchH---HHHHHHHHHHhc
Confidence 3456788999999999987532 0 0 12366666632 2223333 778888888864
No 40
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=86.68 E-value=3.3 Score=39.96 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCeEEEechhhHhhhhCC--CCCCeEEEEcCCCh
Q 008067 80 FSCLLNTLRHFNLETVLRVAGGWVRDKLLGK--DCYDIDIALDNMMG 124 (579)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~--~~~DiDi~~~~~~~ 124 (579)
+..+.+.|+.. |.+.++|||++=.+..|. ..+|||+.+...+.
T Consensus 5 l~~~~~~L~~~--gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~ 49 (181)
T PF09970_consen 5 LKEILEELNKR--GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSP 49 (181)
T ss_pred HHHHHHHHHHc--CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCch
Confidence 44556666765 468899999999988885 47999999976543
No 41
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=86.58 E-value=1.7 Score=46.31 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHhhhhcccCcccc----cCCCC----------cccchHHHHHHHcC-CCcccHHHHHHHHHHHHH
Q 008067 358 FNDDQRRLSQYAALFLPFRNTTYK----DNKGK----------KIPVVNYTFRDSLK-RKASDAETVMNIHRVLEK 418 (579)
Q Consensus 358 ~~~e~~~ll~LAaLlhdigK~~~~----~~~gk----------~h~~~~~~i~~rLk-l~~~d~~~V~~Lv~~h~~ 418 (579)
++++....+.+|++||||||.... .++|+ .|+..|+.+...+. ++.. ......+||++
T Consensus 169 l~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~~iL~~~~~~~~~---~~~~~l~HHEr 241 (344)
T COG2206 169 LSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGYDILKDLPEFLES---VRAVALRHHER 241 (344)
T ss_pred CCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHHHHHHhcccccHH---HHHHHHHhhhc
Confidence 444555678999999999998653 23333 28888888777776 3322 23333457765
No 42
>PRK00106 hypothetical protein; Provisional
Probab=86.49 E-value=5.8 Score=44.69 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...++.|+|||||||....+ ..+.|+.+|+.++...+++. .|...+.+|
T Consensus 373 ~e~a~~AGLLHDIGK~v~~e-~~g~Ha~iGa~ll~~~~~~~----~v~~aI~~H 421 (535)
T PRK00106 373 VALARRAGFLHDMGKAIDRE-VEGSHVEIGMEFARKYKEHP----VVVNTIASH 421 (535)
T ss_pred HHHHHHHHHHHhccCccCcc-ccCChHHHHHHHHHHcCCCH----HHHHHHHHh
Confidence 46788999999999995432 24479999999998888754 345555554
No 43
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=86.10 E-value=1 Score=42.50 Aligned_cols=55 Identities=7% Similarity=-0.091 Sum_probs=38.1
Q ss_pred cHHHHHHHhhhhcccCcccc------------cCCCCcccchHHHHH----HHcCCCcccHHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYK------------DNKGKKIPVVNYTFR----DSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~------------~~~gk~h~~~~~~i~----~rLkl~~~d~~~V~~Lv~~h 416 (579)
.+.++.+++++||+||.... ...+..|+..|+.+. ...++++.....+...|.+|
T Consensus 30 ~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~~~s~~~~~~~~~~~~~~~~~~~~~~~~I~~H 100 (177)
T TIGR01596 30 LRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHSLLSAKLLDALLIKKGYEEEVFKLLALAVIGH 100 (177)
T ss_pred HHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 35678899999999997431 112345888887543 34577777788888888765
No 44
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=85.20 E-value=1.8 Score=45.49 Aligned_cols=23 Identities=4% Similarity=0.054 Sum_probs=17.5
Q ss_pred CCCcccHHHHHHHhhhhcccCcc
Q 008067 357 TFNDDQRRLSQYAALFLPFRNTT 379 (579)
Q Consensus 357 ~~~~e~~~ll~LAaLlhdigK~~ 379 (579)
.|+.-++.+++.+||||||||..
T Consensus 177 ~y~~~n~dll~agalLHDiGKi~ 199 (314)
T PRK13480 177 LYPSLNKDLLYAGIILHDLGKVI 199 (314)
T ss_pred hccccCHHHHHHHHHHHHhhhHH
Confidence 34444667888899999999953
No 45
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=84.98 E-value=0.72 Score=39.46 Aligned_cols=54 Identities=11% Similarity=-0.092 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhcccCcccccCC------CCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKDNK------GKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~------gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...+.+|+|+||+|+....... ...|+..+..+....++++...+.+.+.+..|
T Consensus 28 ~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~h 87 (124)
T smart00471 28 IELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLEEEEPRILEEILATAILSH 87 (124)
T ss_pred HHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHhCCCCHHHHHHHhhHHHHh
Confidence 4568899999999998753211 13566667666666788877777666566665
No 46
>PRK12704 phosphodiesterase; Provisional
Probab=84.43 E-value=1.9 Score=48.47 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...+++|+|||||||....+ .++.|+..|+.++...+++ +.|...+.+|
T Consensus 358 ~~~a~~AgLLHDIGK~~~~e-~~~~H~~iGa~il~~~~~~----~~v~~aI~~H 406 (520)
T PRK12704 358 VKLAKRAGLLHDIGKALDHE-VEGSHVEIGAELAKKYKES----PVVINAIAAH 406 (520)
T ss_pred HHHHHHHHHHHccCcCcccc-ccCCHHHHHHHHHHHcCCC----HHHHHHHHHc
Confidence 44578999999999985432 3567999999988888765 4566666665
No 47
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.10 E-value=1.9 Score=48.51 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...++.|+|||||||....+ ..+.|+.+|+.++...+++ +.|...+.+|
T Consensus 352 ~~~a~~AGLLHDIGK~~~~e-~~~~H~~~Ga~ll~~~~~~----~~V~~aI~~H 400 (514)
T TIGR03319 352 VKLAKRAGLLHDIGKAVDHE-VEGSHVEIGAELAKKYKES----PEVVNAIAAH 400 (514)
T ss_pred HHHHHHHHHHHhcCcccchh-hcccHHHHHHHHHHHcCCC----HHHHHHHHHh
Confidence 34677899999999985422 2457999999888888875 4566666665
No 48
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=82.88 E-value=3.8 Score=36.36 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCC-CCCeEEEEcCCChHH-------HHHHHHHHHHhc
Q 008067 77 TKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGSE-------FATKVAEYLSAT 138 (579)
Q Consensus 77 ~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~-~~DiDi~~~~~~~~~-------f~~~~~~~~~~~ 138 (579)
+.+.+.+.+.++....+..+.++||+=| |++ +.|+||.+....... +.+.+-+.+.+.
T Consensus 8 ~~i~~~V~~~~~~i~p~~~v~i~GSyRR----GK~~~gDiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~ 73 (112)
T PF14792_consen 8 EEIEEIVKEALEKIDPGLEVEICGSYRR----GKETSGDIDILITHPDPSSVSKKLEGLLEKLVKRLEEK 73 (112)
T ss_dssp HHHHHHHHHHHHCCSTT-EEEEEHHHHT----T-SEESSEEEEEEETTCSTTTCSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEcccccc----CCCcCCCeEEEEeCCCcCcchhhHHHHHHHHHHHHHhC
Confidence 3667888999999988999999999976 654 799999886643322 444455555543
No 49
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=81.05 E-value=8.2 Score=42.58 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcC
Q 008067 78 KIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (579)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~ 121 (579)
.|.+.|.+.+.+.+...+++++|-+.|+-.|--. +||||.+--
T Consensus 26 ~l~~~L~~~~~~~~~~~~V~l~GS~ArgT~L~Gd-sDIDIFv~f 68 (447)
T PRK13300 26 ELIERLEEAIKELGLDAEVELVGSTARGTWLSGD-RDIDIFVLF 68 (447)
T ss_pred HHHHHHHHHHHhcCCceEEEEEeeecCCcccCCC-CceeEEEEe
Confidence 3444555666665555899999999999988533 599997743
No 50
>PRK12705 hypothetical protein; Provisional
Probab=80.68 E-value=1.8 Score=48.36 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...++.|+|||||||....+ .++.|+.+|+.++.+.+++. .+...+.+|
T Consensus 346 ~d~a~~AGLLHDIGK~ie~e-~~~~H~~iGaeLlkk~~~p~----~Vv~aI~~H 394 (508)
T PRK12705 346 PALAKRAGLLHDIGKSIDRE-SDGNHVEIGAELARKFNEPD----EVINAIASH 394 (508)
T ss_pred HHHHHHHHHHHHcCCcchhh-hcccHHHHHHHHHHhcCCCH----HHHHHHHHh
Confidence 35567899999999985322 35679999999999998875 344555554
No 51
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=80.56 E-value=7.1 Score=42.47 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEc
Q 008067 79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALD 120 (579)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~ 120 (579)
|.+.|.+.+.+.+...+++++|.+.|+-.|-- ..||||.+-
T Consensus 26 l~~~l~~~~~e~~~~~~v~~~GS~ArgT~L~G-~sDIDIfi~ 66 (408)
T TIGR03671 26 LIARLEEIIEELGVDAEVVLVGSYARGTWLKG-DRDIDIFIL 66 (408)
T ss_pred HHHHHHHHHHhcCCcceEEEEeeEecCCccCC-CCceeEEEE
Confidence 34455555665555689999999999988852 359999774
No 52
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=75.41 E-value=4.2 Score=39.22 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHhhhhcccCccccc--C---CC--CcccchHHHHHHHcCCCcccHHHHHHHHHHHHHHHhhh
Q 008067 364 RLSQYAALFLPFRNTTYKD--N---KG--KKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLI 423 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~~--~---~g--k~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h~~~~~li 423 (579)
.-+..||||||||...... . .| -.|..+++.+.+.+ |+ +.|.++|+.|-.+..++
T Consensus 44 ~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~-F~----~~V~~lV~~Hv~aKryl 105 (179)
T TIGR03276 44 DELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLREL-FS----PSVTEPIRLHVQAKRYL 105 (179)
T ss_pred HHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHH-cC----HHHHHHHHHHHHHHHHH
Confidence 4468999999998753210 0 01 13777777655555 65 67899999998877665
No 53
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=74.94 E-value=9.5 Score=40.54 Aligned_cols=115 Identities=15% Similarity=0.047 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHH
Q 008067 285 KISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRR 364 (579)
Q Consensus 285 ~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ 364 (579)
.+|.-.|+.-+. .+.-|....+.+.+.|++..-+ ....+.+...+|+......+..+...++ + ...
T Consensus 155 ~iSST~IR~~~~---~~~vP~~V~~YI~~~~LY~e~~-----l~~~~~~~~~~HSl~VA~~A~~LA~~~g---~---d~~ 220 (342)
T PRK07152 155 NISSTKIRKGNL---LGKLDPKVNDYINENFLYLEDI-----LKSFLDEYRYKHCLRVAQLAAELAKKNN---L---DPK 220 (342)
T ss_pred ccCHHHHHHHHH---cCCCCHHHHHHHHHcCccccHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHhC---c---CHH
Confidence 456666665543 2334566788888888874322 0001111111222211111112222221 1 236
Q ss_pred HHHHHhhhhcccCccccc------------C----CCCcccchHHHHHHH-cCCCcccHHHHHHHHHHH
Q 008067 365 LSQYAALFLPFRNTTYKD------------N----KGKKIPVVNYTFRDS-LKRKASDAETVMNIHRVL 416 (579)
Q Consensus 365 ll~LAaLlhdigK~~~~~------------~----~gk~h~~~~~~i~~r-Lkl~~~d~~~V~~Lv~~h 416 (579)
.+++|+|||||||....+ . .+..|+.+|+.+... .+++. +.+...+++|
T Consensus 221 ~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~Ga~ll~~~~~~p~---~~i~~aI~~H 286 (342)
T PRK07152 221 KAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLHQYVGALWLKHVYGIDD---EEILNAIRNH 286 (342)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHhHHHHHHHHHHHcCCCc---HHHHHHHHhc
Confidence 678999999999964210 0 013488888876654 47753 2344455554
No 54
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=64.28 E-value=8.2 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCCh
Q 008067 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG 124 (579)
Q Consensus 83 l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~ 124 (579)
+.+.+++......+++.|..+|... .+..|+|+++-....
T Consensus 4 i~~~l~~~~~~~~v~lfGS~a~g~~--~~~SDIDl~i~~~~~ 43 (93)
T PF01909_consen 4 IKEILKELFGVAEVYLFGSYARGDA--TPDSDIDLLIILDEP 43 (93)
T ss_dssp HHHHHHHHHTTEEEEEEHHHHHTSS--CTTSCEEEEEEESST
T ss_pred HHHHHHHHCCCCEEEEECCcccCcC--CCCCCEEEEEEeCCc
Confidence 3444443322678999999999653 345999999876543
No 55
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=63.84 E-value=6.9 Score=33.90 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=23.5
Q ss_pred cHHHHHHHhhhhcccCcccccC-------CCCcccchHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYKDN-------KGKKIPVVNYTFRD 397 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~~~-------~gk~h~~~~~~i~~ 397 (579)
.+..+++||||||+|+...... ....|+..|..+..
T Consensus 27 ~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 27 DIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 4567899999999999753210 12346666765554
No 56
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=61.33 E-value=13 Score=39.53 Aligned_cols=64 Identities=27% Similarity=0.294 Sum_probs=37.3
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEe-chhhHhhhhCCCCCCe---EEEEcCCChHHHHHHHHH
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVA-GGWVRDKLLGKDCYDI---DIALDNMMGSEFATKVAE 133 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lV-GG~VRD~LLg~~~~Di---Di~~~~~~~~~f~~~~~~ 133 (579)
.+|-+.+.+......+...|+..|+.. ..+ -|..-=+++...|-|+ |+-..+|.|.++..+++.
T Consensus 15 ~~vl~vDD~~~~~~~~~~lL~~~~y~v--~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~ 82 (360)
T COG3437 15 LTVLLVDDEPDNLEALRQLLRMIGYRV--IEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKA 82 (360)
T ss_pred ceEEEecCchhHHHHHHHHHHhcccce--eeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHh
Confidence 566677788777788888888876433 222 3444445566666332 333344566666555543
No 57
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=60.12 E-value=81 Score=28.48 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCeEEEechhhHhhhhCCCCCCeEEEEcCC--------ChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEE
Q 008067 93 ETVLRVAGGWVRDKLLGKDCYDIDIALDNM--------MGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATM 164 (579)
Q Consensus 93 ~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~--------~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~ 164 (579)
...+|+.|.+.|+-.+. +..|||+++--. ...++...+.+.|...... -..+. .++ ..+++
T Consensus 27 ~~~~~~~GS~a~~T~i~-~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~----~~~~~-----~~~-~~v~v 95 (143)
T cd05400 27 VAEVFLQGSYARGTALR-GDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA----NEEVK-----AQH-RSVTV 95 (143)
T ss_pred ccEEEEEcceeCCCCCC-CCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc----ccccc-----cCc-eEEEE
Confidence 36799999999987764 379999987432 2223344455555443210 01111 111 46677
Q ss_pred Eec--Ceeeeeeccc
Q 008067 165 KLY--DLWIDFVNLR 177 (579)
Q Consensus 165 ~~~--~~~iD~~~~R 177 (579)
.+. ++.+|++...
T Consensus 96 ~~~~~~~~vDvvP~~ 110 (143)
T cd05400 96 KFKGQGFHVDVVPAF 110 (143)
T ss_pred EEcCCCeEEEEEEEe
Confidence 777 7899998765
No 58
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=58.37 E-value=11 Score=40.91 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=56.6
Q ss_pred cceecChhHHHHH--------HHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 008067 68 DKIELTDTETKIF--------SCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATG 139 (579)
Q Consensus 68 ~~i~l~~~e~~~~--------~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g 139 (579)
..|.=|++|.+.. +.+.+++++.|...++.+||-.-|+-.| +.-+||||-+--..... -+.+.+.--..|
T Consensus 12 ~~i~P~~eE~~~~~~~~e~l~~~~~~~~~e~~~~aev~lVGS~AkgTwL-~gd~DIDvFi~Fp~d~~-~eel~~~GL~ig 89 (443)
T COG1746 12 KRIKPTEEERKKLKEVAEELRERINEIIEELGIDAEVVLVGSYAKGTWL-RGDHDIDVFIAFPKDTS-EEELEEKGLEIG 89 (443)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeecccCccc-CCCcceeEEEECCCCCC-HHHHHHHHHHHH
Confidence 3444455555443 3455566677888899999999999887 44689998764431100 123333221222
Q ss_pred CccCCceEEecCCCCCCcceEEEEEEecCeeeeeecc
Q 008067 140 ETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNL 176 (579)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~~iD~~~~ 176 (579)
...-++ ...+.....| .-++..++|+.+|++.+
T Consensus 90 ~~~l~~---~~~~~~YAeH-PYV~g~v~G~eVDvVPC 122 (443)
T COG1746 90 REVLKR---GNYEERYAEH-PYVTGEVDGYEVDVVPC 122 (443)
T ss_pred HHHhcC---CchhhhhccC-CeeEEEEccEEEEEEec
Confidence 111000 0001111233 34667788999999984
No 59
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=55.06 E-value=23 Score=38.59 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccC-----CCcccHHHHHHHhhhhcccCcc
Q 008067 305 VKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSST-----FNDDQRRLSQYAALFLPFRNTT 379 (579)
Q Consensus 305 ~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~e~~~ll~LAaLlhdigK~~ 379 (579)
.+-|+.+.++|+...++ |.- +....+ ||.....-+..+.+.+.... .++-..-...+|+||||||.|.
T Consensus 51 FqRLr~vkQlGl~~~vy--p~A-~HsRfe----HsLG~~~lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGHGP 123 (498)
T KOG2681|consen 51 FQRLRHVKQLGLRYLVY--PGA-NHSRFE----HSLGTYTLAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGHGP 123 (498)
T ss_pred HHHHHHHHHhCceeeec--cCC-ccchhh----hhhhhHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 55677888999998888 762 111111 23222222333445544221 1111223457899999999987
Q ss_pred c
Q 008067 380 Y 380 (579)
Q Consensus 380 ~ 380 (579)
+
T Consensus 124 f 124 (498)
T KOG2681|consen 124 F 124 (498)
T ss_pred h
Confidence 6
No 60
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=54.29 E-value=41 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCCCCCeEEEEcCCChHHHHHHHHHHHHh
Q 008067 109 GKDCYDIDIALDNMMGSEFATKVAEYLSA 137 (579)
Q Consensus 109 g~~~~DiDi~~~~~~~~~f~~~~~~~~~~ 137 (579)
..+..|+||++.......|...+.+.+..
T Consensus 29 di~~SDLDIic~~~d~~~F~~~l~~~f~~ 57 (152)
T PF14091_consen 29 DIPGSDLDIICEVPDPEAFEQLLQSLFGQ 57 (152)
T ss_pred CCCCCCccEEEEeCCHHHHHHHHHHHhcc
Confidence 34678999999998888888777775543
No 61
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=53.39 E-value=16 Score=34.21 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhcccCccccc-------C-----------CCCcccchHHHHHHHc-CCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKD-------N-----------KGKKIPVVNYTFRDSL-KRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~-------~-----------~gk~h~~~~~~i~~rL-kl~~~d~~~V~~Lv~~h 416 (579)
....++|+|+|||||..... . .+-.|+.+|+.+.+.. +++. +.|...|++|
T Consensus 31 ~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~vGa~ll~~w~~~~~---~~i~~aI~~H 100 (158)
T TIGR00488 31 SKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKLLHAYVGAYILKREFGVQD---EDILDAIRNH 100 (158)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccccHHHHHHHHHHHHhCCCc---HHHHHHHHHh
Confidence 34688999999999953210 0 0113777787666654 4533 2345555554
No 62
>PRK10854 exopolyphosphatase; Provisional
Probab=48.90 E-value=22 Score=40.07 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=38.6
Q ss_pred ccHHHHHHHhhhhcccCcccccCCCCcccchHHHH--HHHcCCCcccHHHHHHHHHHHHH
Q 008067 361 DQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTF--RDSLKRKASDAETVMNIHRVLEK 418 (579)
Q Consensus 361 e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i--~~rLkl~~~d~~~V~~Lv~~h~~ 418 (579)
..+.++.+||+|||+|+-.-... ...|+ .++| .+-.||+..+...++.++++|..
T Consensus 358 ~~~~LL~~Aa~LhdiG~~I~~~~-~~~Hs--~yiI~~s~l~G~s~~E~~~iA~i~ryh~k 414 (513)
T PRK10854 358 QLEALLKWAAMLHEVGLNINHSG-LHRHS--AYILQNTDLPGFNQEQQLMLATLVRYHRK 414 (513)
T ss_pred HHHHHHHHHHHHHhcCCccCCCC-cchhH--HHHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 34568889999999998753221 11232 2343 34579999999999999999863
No 63
>PF03458 UPF0126: UPF0126 domain; InterPro: IPR005115 This domain is duplicated in bacterial membrane proteins of unknown function and each domain contains three transmembrane helices. The conserved glycines are suggestive of an ion channel.
Probab=47.28 E-value=10 Score=31.52 Aligned_cols=15 Identities=53% Similarity=0.866 Sum_probs=13.1
Q ss_pred EechhhHhhhhCCCC
Q 008067 98 VAGGWVRDKLLGKDC 112 (579)
Q Consensus 98 lVGG~VRD~LLg~~~ 112 (579)
+-||-+||.|+|+.|
T Consensus 39 ~GGG~lRDvll~~~P 53 (80)
T PF03458_consen 39 VGGGILRDVLLGRTP 53 (80)
T ss_pred hhcHHHHHHHcCCCC
Confidence 449999999999966
No 64
>COG4849 Predicted nucleotidyltransferase [General function prediction only]
Probab=42.70 E-value=46 Score=32.95 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCeEEEechhhHhhhh--------CCCCCCeEEEEcCCChHHHHHHHHHHHHh
Q 008067 93 ETVLRVAGGWVRDKLL--------GKDCYDIDIALDNMMGSEFATKVAEYLSA 137 (579)
Q Consensus 93 ~~~~~lVGG~VRD~LL--------g~~~~DiDi~~~~~~~~~f~~~~~~~~~~ 137 (579)
.....+||.-.||.+. |+..+|+||+..-.+=..| +.++.-|+.
T Consensus 25 ~e~~mlVGA~cRDil~~~~~~~~~~Rat~D~DfA~alesWd~F-~~lr~tfrp 76 (269)
T COG4849 25 NERYMLVGAQCRDILHWRFCRGVPPRATNDTDFAGALESWDHF-EALRATFRP 76 (269)
T ss_pred hhhheeehhhHHHHHHHHHhcCCCCCCCCccchhhhhcchhhH-HHHHHhccc
Confidence 3456799999999986 5567999998754443344 455554443
No 65
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=42.66 E-value=31 Score=38.67 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=38.4
Q ss_pred ccHHHHHHHhhhhcccCcccccCCCCcccchHHHHH--HHcCCCcccHHHHHHHHHHHHH
Q 008067 361 DQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFR--DSLKRKASDAETVMNIHRVLEK 418 (579)
Q Consensus 361 e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~--~rLkl~~~d~~~V~~Lv~~h~~ 418 (579)
..+.++.+||+|||+|+-.-... ...|+ .++|. +-.||+.++...++.++++|.+
T Consensus 350 ~~~~LL~~Aa~LhdiG~~I~~~~-~~~Hs--~yiI~~s~l~G~s~~E~~~iA~i~~~h~k 406 (496)
T PRK11031 350 RSRELLISACQLHEIGLSVDFKQ-APQHA--AYLVRNLDLPGFTPAQKKLLATLLLNQTN 406 (496)
T ss_pred HHHHHHHHHHHHHhcCCccCCCc-cchHH--HHHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 34568889999999998752211 11232 33443 3479999999999999999863
No 66
>PF08843 DUF1814: Nucleotidyl transferase of unknown function (DUF1814); InterPro: IPR014942 This large group of proteins are largely uncharacterised. Some are annotated as abortive infective proteins but support for this annotation could not be found.
Probab=41.87 E-value=46 Score=32.32 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=26.7
Q ss_pred cCCCCeEEEechhhHhhhhC---CCCCCeEEEEcCC
Q 008067 90 FNLETVLRVAGGWVRDKLLG---KDCYDIDIALDNM 122 (579)
Q Consensus 90 ~~~~~~~~lVGG~VRD~LLg---~~~~DiDi~~~~~ 122 (579)
...+..+.+.||..-.+..+ |.+.||||++...
T Consensus 9 ~~~~~~~~l~GGtal~l~~~~~~R~S~DiD~~~~~~ 44 (233)
T PF08843_consen 9 SSLGDPFVLKGGTALSLRYGGSHRFSEDIDFVVDRD 44 (233)
T ss_pred cccCCCEEEECHHHHHHhcCCCcEecCcccEEEecc
Confidence 34567789999999999843 6789999999764
No 67
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=41.36 E-value=40 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=26.3
Q ss_pred ccChHHHHHHcCCCCCCchHHHHHHHHHHHHHcCCCC
Q 008067 523 LVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHPSG 559 (579)
Q Consensus 523 LLnGkdIm~~Lglk~pGP~vg~~l~~llewQL~~P~~ 559 (579)
.-|-.-+.+.||-+ |---+.+++.....|+-.||.|
T Consensus 26 ~Ad~~kA~~~LgW~-p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 26 VADISKAREELGWK-PKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp -B--HHHHHHC-----SSSHHHHHHHHHHHHHHSTTT
T ss_pred hCCHHHHHHHhCCC-cCCCHHHHHHHHHHHHHHCcCC
Confidence 45666778899999 8889999999999999999986
No 68
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=41.32 E-value=31 Score=28.18 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHHhcCC-CCeEEEechhhHhhhhCCCCCCeEEEEcCCC
Q 008067 83 LLNTLRHFNL-ETVLRVAGGWVRDKLLGKDCYDIDIALDNMM 123 (579)
Q Consensus 83 l~~~~~~~~~-~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~ 123 (579)
+.+.+++... -..+|+-|-++|.--- +-.||||++-...
T Consensus 7 i~~~l~~~~~~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~ 46 (93)
T cd05403 7 ILEILRELLGGVEKVYLFGSYARGDAR--PDSDIDLLVIFDD 46 (93)
T ss_pred HHHHHHHHhCCccEEEEEeeeecCCCC--CCCCeeEEEEeCC
Confidence 4444444332 4679999999885443 5789999986653
No 69
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=40.63 E-value=63 Score=33.54 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCC--------CC--cccchHH----HHHHHcCCCcccH
Q 008067 341 AYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNK--------GK--KIPVVNY----TFRDSLKRKASDA 406 (579)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~--------gk--~h~~~~~----~i~~rLkl~~~d~ 406 (579)
+|..++..+.... +..++.-+..+++.++++||+||+.-.... |. .|.+.+. ..+..++.+.++.
T Consensus 144 ~ht~~~~~l~~~~-~~~y~~~n~dli~Ag~ilHdigK~~el~~~~~~~yt~~g~ligHia~~~d~i~~~a~El~~~~~~v 222 (287)
T COG3481 144 EHTLTVLELYKRI-SEIYPTVNRELIYAGAILHDIGKVLELTGPEATEYTVRGNLIGHIALIVDEITKAARELGIDDEEV 222 (287)
T ss_pred HHHHHHHHHHHHH-HhhcccccHHHHHHHHHHhcccccccCCCcccccceeccceeEEEEeehhHHHHHHHHhCCCchhh
Confidence 3444444444433 233443456778888999999998543221 11 1333222 4677788876443
Q ss_pred HHHHHHHH
Q 008067 407 ETVMNIHR 414 (579)
Q Consensus 407 ~~V~~Lv~ 414 (579)
-.+.+.+.
T Consensus 223 ~~l~h~Il 230 (287)
T COG3481 223 LALRHEIL 230 (287)
T ss_pred hHhhHhhh
Confidence 34433333
No 70
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=39.40 E-value=2.1e+02 Score=32.06 Aligned_cols=200 Identities=17% Similarity=0.225 Sum_probs=111.4
Q ss_pred ecccceecCh--hHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhc-CCc
Q 008067 65 QVRDKIELTD--TETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSAT-GET 141 (579)
Q Consensus 65 ~~~~~i~l~~--~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~-g~~ 141 (579)
.+..-++||- -.....+.-++.+.+.|..- .++ |.|-+|.+=|--+....+.+.|--+.+|.++. |..
T Consensus 77 ~v~t~mHlTCtn~~~~~Id~aLe~a~~~GirN--ILA-------LRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDy 147 (590)
T KOG0564|consen 77 GLETCMHLTCTNMPKEMIDKALEQAKALGIRN--ILA-------LRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDY 147 (590)
T ss_pred CccceeeeeccCccHHHHHHHHHHHHHhCchh--hhh-------hcCCCCCCccccccccCCchhHHHHHHHHHHHhCCe
Confidence 3344445543 44455555566666655322 232 67889998885555444555566666776653 322
Q ss_pred cCCceEEecCCCCCCcceEEEEEEecCeeeeeecccccccCCCCCCcccccCCHHHHH--------hcCCCCccceeeec
Q 008067 142 APSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDA--------YRRDLTINSLFYNI 213 (579)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl--------~RRDfTINAla~~~ 213 (579)
+ .++| ..+|+. +|++...+++.|+ +--||-|--|||+.
T Consensus 148 F--~IgV-AgYPEg-------------------------------hpe~~~~~~~~Dl~yLk~KvdaGaDFIiTQlFYd~ 193 (590)
T KOG0564|consen 148 F--CIGV-AGYPEG-------------------------------HPEAPSHDYLADLPYLKEKVDAGADFIITQLFYDV 193 (590)
T ss_pred E--EEEe-ccCCCC-------------------------------CcCCcccchhhhhHHHHHhhcccchhhhhhhhcCH
Confidence 2 2222 112221 2222111233443 23699999999997
Q ss_pred CCCceecCccccHHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHc-CCCCCHHHHHHH---HchHHHHHHhccCCHH
Q 008067 214 NTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARF-DFILDEELKKAA---ASDEVKAALAAKISRE 289 (579)
Q Consensus 214 ~~~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarl-gf~i~~~t~~ai---~~~~~~~~l~~~vs~e 289 (579)
.+ ++-| ..|.++.-|..|.-|..--... .++|.-++++ +.+|..+....+ +.. ....+.+..|
T Consensus 194 e~--flkf----v~~cR~~gi~~PIvPGIMPI~~----Y~sf~R~~kls~~~IP~~~~~~L~piKdd---DeaVr~~Gve 260 (590)
T KOG0564|consen 194 ET--FLKF----VKDCRAAGINVPIVPGIMPIQS----YRSFLRIAKLSGVSIPQHLMDRLEPIKDD---DEAVRNYGVE 260 (590)
T ss_pred HH--HHHH----HHHHHHhCCCCCcccccccchh----HHHHHHHHHHhCCCCCHHHHHhcccCCCc---HHHHHHHhHH
Confidence 53 4444 3677777777776665544444 4444444554 678887766554 433 3444555666
Q ss_pred HHHHHHHHhhcCC----------CHHH-HHHHHHHcCCCcEe
Q 008067 290 RVGTEIDLMVSGN----------QPVK-AMTHICGLTLFWIV 320 (579)
Q Consensus 290 Ri~~El~kiL~~~----------~~~~-~l~~l~~~gll~~i 320 (579)
.+.+-..|||... +-.+ ....|.++|++...
T Consensus 261 l~vemc~kll~~g~v~~lHfyTlNlEksv~~IL~~lgll~~~ 302 (590)
T KOG0564|consen 261 LIVEMCRKLLDSGVVPGLHFYTLNLEKSVAAILKRLGLLDEL 302 (590)
T ss_pred HHHHHHHHHHhcCccceeEEEEecHHHHHHHHHHhcCccccc
Confidence 6666667777655 2223 34567789998765
No 71
>COG2860 Predicted membrane protein [Function unknown]
Probab=37.09 E-value=17 Score=35.78 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=12.4
Q ss_pred EechhhHhhhhCCCC
Q 008067 98 VAGGWVRDKLLGKDC 112 (579)
Q Consensus 98 lVGG~VRD~LLg~~~ 112 (579)
+-||.+||.|+|+-|
T Consensus 44 iGGGtiRDlLLG~~P 58 (209)
T COG2860 44 IGGGTIRDLLLGHYP 58 (209)
T ss_pred hcchHHHHHHccCCC
Confidence 449999999999654
No 72
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=35.62 E-value=80 Score=27.39 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH-hcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHH
Q 008067 78 KIFSCLLNTLR-HFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEF 127 (579)
Q Consensus 78 ~~~~~l~~~~~-~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f 127 (579)
.++..+...++ .+| -.++.|-|-.+|+- ..+-.||||.|+..++..+
T Consensus 9 ~~lr~~~~~l~~k~g-v~~~~vFGS~aRgE--~~~~SDIDILVef~~~~~l 56 (97)
T COG1669 9 KILRKIKPELKEKYG-VKRVAVFGSYARGE--QKPDSDIDILVEFEPGKTL 56 (97)
T ss_pred HHHHHHHHHHHHHhC-CceEEEeeeeecCC--CCCCCCceeEEeecCCccH
Confidence 34556667776 444 35788999999875 3566999999998766333
No 73
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=33.23 E-value=72 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcC
Q 008067 85 NTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (579)
Q Consensus 85 ~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~ 121 (579)
......+.-..+|+.|.++|.-... -.|||+++-.
T Consensus 18 ~~~~~~~~~~~v~LfGS~arG~~~~--~SDiDv~vv~ 52 (128)
T COG1708 18 AIEKKLGGDLLIYLFGSYARGDFVK--ESDIDLLVVS 52 (128)
T ss_pred HHHHhcCCCeEEEEEccCccccccc--CCCeeEEEEc
Confidence 3333334457899999999966543 7899998864
No 74
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=32.41 E-value=1e+02 Score=32.02 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHH
Q 008067 75 TETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEF 127 (579)
Q Consensus 75 ~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f 127 (579)
.|+.+++.|+++++.-..=--+++.|--++--.---.-.|+||+.-....+.|
T Consensus 3 te~em~~~Il~~A~~d~rIraV~l~GSR~n~~~~~D~fqDyDIv~~v~d~~~f 55 (282)
T PF04439_consen 3 TEQEMMDLILEFAKQDERIRAVILNGSRANPNAPKDEFQDYDIVYVVTDIESF 55 (282)
T ss_dssp -HHHHHHHHHHHHHH-TTEEEEEE----------------EEEEEEES-HHHH
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCCCccccccccEEEEecchhhh
Confidence 46778999999987643222456667777654444445799997755433333
No 75
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=29.50 E-value=31 Score=40.03 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHhhhhcccCcccccCC----CCcccchHH
Q 008067 367 QYAALFLPFRNTTYKDNK----GKKIPVVNY 393 (579)
Q Consensus 367 ~LAaLlhdigK~~~~~~~----gk~h~~~~~ 393 (579)
.+|||||||||....... .+.|+..|+
T Consensus 2 ~~~aLLHDIGK~~~Ra~~~~~~~~~h~~~g~ 32 (648)
T TIGR02578 2 AVAALLHDIGKVIRRAGDCYNEDLKHDKTGY 32 (648)
T ss_pred chhhhhhccchhhhhcccCcccccchhhhhH
Confidence 579999999998654321 145766665
No 76
>PTZ00418 Poly(A) polymerase; Provisional
Probab=28.64 E-value=3.3e+02 Score=31.28 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=95.6
Q ss_pred CCeEEEechhhHhhhhCC--CCCCeEEEEcCC---ChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEec
Q 008067 93 ETVLRVAGGWVRDKLLGK--DCYDIDIALDNM---MGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLY 167 (579)
Q Consensus 93 ~~~~~lVGG~VRD~LLg~--~~~DiDi~~~~~---~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~ 167 (579)
+..++.+|-+ -||- +..|||..+-+. +.++|-..+.+.|+...+ . ..+..| | ..+.-+.++.+.
T Consensus 126 ~g~I~tfGSY----rLGV~~pgSDID~L~V~P~~vtredFF~~f~~~L~~~~~-V-~eL~~V---~--~A~VPiIk~~~~ 194 (593)
T PTZ00418 126 SGKLFTFGSY----RLGVVAPGSDIDTLCLAPRHITRESFFSDFYAKLQQDPN-I-TKLQPV---P--DAYTPVIKFVYD 194 (593)
T ss_pred CeEEEEeccc----cccCCCCCCcccEEEECCCCCCHHHHHHHHHHHHhcCCC-c-ceeecc---C--ccccCeEEEEEC
Confidence 5677887765 6773 568999988664 345676667766655321 1 223333 2 245567788899
Q ss_pred CeeeeeecccccccCCCCCCcccccCCHHHHHhcCCCCcc-ceeeecCCCceecCccccHHHhhcCceecCCCCCCCccc
Q 008067 168 DLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTIN-SLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLD 246 (579)
Q Consensus 168 ~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTIN-Ala~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~e 246 (579)
|+.||+.-.|-- -.++|+ |+ |.--+ ++..|+....+--. +|..|-. -+++.+- ....|+
T Consensus 195 GI~iDL~fa~l~----~~~vp~--------~~---~~l~d~~lL~nlde~s~rSL--NG~Rvtd-~Il~lVP-n~~~Fr- 254 (593)
T PTZ00418 195 GIDIDLLFANLP----LPTIPD--------CL---NSLDDDYILRNVDEKTVRSL--NGCRVAD-LILASVP-NKDYFR- 254 (593)
T ss_pred CEEEeeeecccC----CCCCCc--------cc---cccCchhhhhcCCHHHhhhh--ccHHHHH-HHHHHCC-ChHHHH-
Confidence 999998866531 122332 11 11111 23344433333332 3655543 3566662 234555
Q ss_pred CHHHHHHHHHHHHH--------cCC--CCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcC
Q 008067 247 DPLRVLRAIRFGAR--------FDF--ILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSG 301 (579)
Q Consensus 247 DPlRiLRa~Rfaar--------lgf--~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~ 301 (579)
-.||++++-|+ +|| -|+...+-|- + ..+..+.+...+-.-|+.++..
T Consensus 255 ---~aLR~IKlWAkrRGIYsNv~GflGGV~wAILvAR----V-CQLyPna~~s~Lv~~FF~iys~ 311 (593)
T PTZ00418 255 ---TTLRFIKLWAKRRGIYSNVLGYLGGVSWAILTAR----I-CQLYPNFAPSQLIHKFFRVYSI 311 (593)
T ss_pred ---HHHHHHHHHHHHhccccccccccchHHHHHHHHH----H-HHhCCCCCHHHHHHHHHHHhhc
Confidence 48899998776 466 2434333321 1 3455677888888888877654
No 77
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=28.28 E-value=1.4e+02 Score=31.32 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=42.6
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCC-CCCCeEEEEcCCChH--HHHHHHHHHHHhcC
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK-DCYDIDIALDNMMGS--EFATKVAEYLSATG 139 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~-~~~DiDi~~~~~~~~--~f~~~~~~~~~~~g 139 (579)
.+|.+.+.+ .+.+.|++.++....+..+.+||+.=| |+ .+.|+||++...... .+.+.+...+...+
T Consensus 136 ~ri~r~ea~-~~a~~i~~~l~~~~~~~~v~i~GS~RR----g~et~gDiDilv~~~~~~~~~~~~~v~~~l~~~~ 205 (307)
T cd00141 136 QRIPREEAL-AIAEIIKEALREVDPVLQVEIAGSYRR----GKETVGDIDILVTHPDATSRGLLEKVVDALVELG 205 (307)
T ss_pred CCeEHHHHH-HHHHHHHHHHHhCCCceEEEEcccccC----CCCccCCEEEEEecCCccccccHHHHHHHHHhCC
Confidence 456666665 557778888888766778888887633 44 479999999764310 12234555555443
No 78
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=26.02 E-value=1.3e+02 Score=35.95 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=14.7
Q ss_pred HcCCCcccHHHHHHHHHHH
Q 008067 398 SLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 398 rLkl~~~d~~~V~~Lv~~h 416 (579)
...++.++.+.|.+||..|
T Consensus 764 ~~~l~~~~~~lvl~liaaH 782 (844)
T TIGR02621 764 FSMLSEELSDLVLHLVATH 782 (844)
T ss_pred ccccChhHHHHHHHHHHHh
Confidence 3567777889999998765
No 79
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=25.40 E-value=34 Score=34.11 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.2
Q ss_pred HHHHHHhhhhcccCc
Q 008067 364 RLSQYAALFLPFRNT 378 (579)
Q Consensus 364 ~ll~LAaLlhdigK~ 378 (579)
.++++||||||+||.
T Consensus 106 ~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 106 AAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHhhhhh
Confidence 367889999999998
No 80
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=21.36 E-value=1.2e+02 Score=29.00 Aligned_cols=53 Identities=23% Similarity=0.435 Sum_probs=39.6
Q ss_pred eecccceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcC
Q 008067 64 VQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (579)
Q Consensus 64 ~~~~~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~ 121 (579)
+-++..-..|++|+.+.+.+-+.|+.......+.++|||- |-..+--|++-++
T Consensus 45 I~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CVAGGWA-----GGnAksKdl~KNa 97 (236)
T KOG4022|consen 45 ILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCVAGGWA-----GGNAKSKDLVKNA 97 (236)
T ss_pred EEecCCcchhHHHHHHHHHHHHhhcccccceEEEeecccc-----CCCcchhhhhhch
Confidence 5566677889999999998888888776777889999995 5444444555554
No 81
>PRK10578 hypothetical protein; Provisional
Probab=21.02 E-value=49 Score=32.71 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=12.9
Q ss_pred EechhhHhhhhCCCC
Q 008067 98 VAGGWVRDKLLGKDC 112 (579)
Q Consensus 98 lVGG~VRD~LLg~~~ 112 (579)
+=||-+||.|+|+.|
T Consensus 41 ~GGG~iRDill~~~P 55 (207)
T PRK10578 41 VGGGTIRDMALDNGP 55 (207)
T ss_pred hhcHHHHHHHcCCCC
Confidence 449999999999876
No 82
>PRK02126 ribonuclease Z; Provisional
Probab=20.53 E-value=72 Score=33.84 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=21.5
Q ss_pred CcccChHHHHHHcCCCCCCchHHHHHHHH
Q 008067 521 KPLVNGKDIMNVLQLKSGGPLVREWQQKL 549 (579)
Q Consensus 521 KPLLnGkdIm~~Lglk~pGP~vg~~l~~l 549 (579)
+|-||-..+.+ +|++ ||||+|++.+.+
T Consensus 176 ~~~~~~ek~~~-~gi~-~g~~~~~Lk~~~ 202 (334)
T PRK02126 176 HINIDKNRLAE-LGLP-PGPWLRELKHAV 202 (334)
T ss_pred CcCcCHHHHHH-cCCC-CChHHHHHHhhh
Confidence 35688777766 5999 999999999753
Done!