Query 008067
Match_columns 579
No_of_seqs 322 out of 1644
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h38_A TRNA nucleotidyl transf 100.0 3.7E-65 1.3E-69 549.1 31.2 407 70-575 13-424 (441)
2 1miw_A TRNA CCA-adding enzyme; 100.0 5.6E-65 1.9E-69 544.9 32.5 385 82-574 10-399 (404)
3 1ou5_A TRNA CCA-adding enzyme, 100.0 3.1E-65 1.1E-69 552.5 20.8 379 83-570 62-447 (448)
4 1vfg_A A-adding enzyme, poly A 100.0 1.2E-61 4.1E-66 517.9 30.3 298 83-421 2-302 (390)
5 3aql_A Poly(A) polymerase; tra 100.0 8.9E-56 3E-60 474.3 16.2 317 68-420 13-354 (415)
6 3djb_A Hydrolase, HD family; a 95.3 0.013 4.4E-07 57.1 4.4 72 338-416 25-100 (223)
7 3b57_A LIN1889 protein; Q92AN1 95.1 0.019 6.4E-07 55.2 5.1 75 339-416 26-100 (209)
8 3dto_A BH2835 protein; all alp 94.8 0.022 7.5E-07 55.5 4.6 72 338-416 25-100 (223)
9 2qgs_A Protein Se1688; alpha-h 94.7 0.018 6.3E-07 56.0 3.8 74 339-416 26-100 (225)
10 2pjq_A Uncharacterized protein 94.7 0.013 4.6E-07 57.2 2.8 75 339-416 31-105 (231)
11 3gw7_A Uncharacterized protein 94.1 0.014 4.8E-07 57.5 1.4 77 338-416 25-107 (239)
12 2la3_A Uncharacterized protein 94.0 0.79 2.7E-05 43.3 13.1 121 82-236 23-156 (191)
13 2pq7_A Predicted HD superfamil 93.5 0.039 1.3E-06 53.2 3.3 55 362-417 55-113 (220)
14 4e8j_A Lincosamide resistance 92.7 0.19 6.6E-06 46.1 6.4 52 82-139 13-67 (161)
15 3nyb_A Poly(A) RNA polymerase 90.4 1.9 6.6E-05 43.9 11.9 98 68-174 30-137 (323)
16 2fcl_A Hypothetical protein TM 88.4 1.2 4.2E-05 41.1 7.9 55 78-139 20-76 (169)
17 3ccg_A HD superfamily hydrolas 84.3 1.7 5.8E-05 40.6 6.6 50 364-416 43-112 (190)
18 2o08_A BH1327 protein; putativ 79.1 2.1 7.2E-05 39.8 5.1 50 364-416 42-110 (188)
19 4e8f_A Poly(A) RNA polymerase 77.0 13 0.00046 38.9 11.1 73 64-138 49-128 (405)
20 2ogi_A Hypothetical protein SA 73.6 2.3 7.9E-05 39.9 3.7 50 364-416 50-118 (196)
21 1q79_A Poly(A) polymerase alph 69.6 18 0.00063 39.1 10.1 77 92-177 93-172 (514)
22 3tm8_A BD1817, uncharacterized 69.0 5.8 0.0002 40.3 5.8 54 359-416 188-257 (328)
23 2hek_A Hypothetical protein; p 67.6 8.7 0.0003 39.9 6.9 51 364-415 75-140 (371)
24 2ikf_A RNA uridylyl transferas 66.7 28 0.00097 35.5 10.5 47 73-121 46-93 (353)
25 3hc1_A Uncharacterized HDOD do 62.9 3.2 0.00011 41.7 2.3 51 362-416 141-217 (305)
26 2hhp_A Poly(A) polymerase; tem 60.7 38 0.0013 36.8 10.5 77 93-178 81-160 (530)
27 3pq1_A Poly(A) RNA polymerase; 60.0 52 0.0018 35.1 11.2 54 65-120 140-197 (464)
28 3rf0_A Exopolyphosphatase; str 56.3 5.5 0.00019 37.8 2.7 55 361-418 47-105 (209)
29 1no5_A Hypothetical protein HI 55.6 18 0.0006 30.6 5.5 48 70-122 7-54 (114)
30 4fh3_A Poly(A) RNA polymerase 51.0 40 0.0014 34.1 8.4 53 67-121 24-80 (349)
31 1jms_A Terminal deoxynucleotid 46.8 31 0.0011 35.8 6.7 66 69-139 173-244 (381)
32 1ylq_A Putative nucleotidyltra 46.5 28 0.00097 28.3 5.2 39 80-121 4-44 (96)
33 2bcq_A DNA polymerase lambda; 41.2 39 0.0013 34.4 6.3 68 67-139 144-215 (335)
34 3i7a_A Putative metal-dependen 40.3 5.7 0.00019 39.3 -0.1 52 361-416 145-213 (281)
35 1wot_A Putative minimal nucleo 40.2 29 0.00099 28.4 4.3 41 78-121 11-51 (98)
36 1vqr_A Hypothetical protein CJ 39.4 7.6 0.00026 38.6 0.7 51 362-416 147-224 (297)
37 2ihm_A POL MU, DNA polymerase 39.3 41 0.0014 34.6 6.2 67 68-139 152-222 (360)
38 1u6z_A Exopolyphosphatase; alp 37.8 10 0.00035 41.0 1.4 52 363-417 360-413 (513)
39 2rff_A Putative nucleotidyltra 35.9 54 0.0019 27.5 5.4 40 81-122 21-60 (111)
40 2fmp_A DNA polymerase beta; nu 34.8 54 0.0018 33.3 6.2 67 68-139 148-222 (335)
41 2q14_A Phosphohydrolase; BT420 34.1 40 0.0014 35.3 5.2 36 362-397 85-126 (410)
42 2khr_A Protein MBTH; sideropho 33.7 9.5 0.00032 30.2 0.2 21 552-572 39-59 (74)
43 3sk9_A Putative uncharacterize 33.1 18 0.00062 35.6 2.2 17 363-379 64-80 (265)
44 3irh_A HD domain protein; phos 32.5 23 0.00078 38.0 3.0 19 362-380 123-141 (480)
45 3ljx_A MMOQ response regulator 29.6 18 0.00061 35.8 1.5 51 362-416 131-205 (288)
46 2ba3_A NIKA; dimer, bacterial 27.3 47 0.0016 23.6 3.1 34 68-109 18-51 (51)
47 1rfz_A Hypothetical protein AP 26.5 64 0.0022 29.5 4.5 38 539-576 24-62 (168)
48 3m1t_A Putative phosphohydrola 25.0 16 0.00056 35.8 0.2 50 363-416 128-202 (275)
49 2pst_X Hypothetical protein PA 24.7 8.8 0.0003 30.4 -1.4 21 552-572 37-57 (74)
50 1y9i_A Low temperature require 24.2 75 0.0026 29.3 4.5 38 539-576 22-60 (178)
51 3b0x_A DNA polymerase beta fam 24.0 87 0.003 34.2 5.9 119 68-209 156-283 (575)
52 2pbe_A AAD6, aminoglycoside 6- 21.8 1.6E+02 0.0056 29.1 6.9 52 75-127 5-57 (294)
53 2dqb_A Deoxyguanosinetriphosph 21.8 1.1E+02 0.0037 31.7 5.7 18 363-380 98-115 (376)
54 3mem_A Putative signal transdu 21.1 42 0.0014 35.6 2.5 51 362-416 304-381 (457)
55 2b4v_A RNA editing complex pro 20.9 1.2E+02 0.0042 32.2 6.1 42 78-122 43-86 (468)
56 3m5f_A Metal dependent phospho 20.2 39 0.0013 32.9 1.8 18 363-380 56-73 (244)
No 1
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=3.7e-65 Score=549.10 Aligned_cols=407 Identities=21% Similarity=0.309 Sum_probs=302.2
Q ss_pred eecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEe
Q 008067 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVI 149 (579)
Q Consensus 70 i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i 149 (579)
..|.+.-..++..|.+.++.. |+++|+|||||||+|||++++|+||||++. +.+|++.+.+.+ +..++
T Consensus 13 ~~lp~~~~~~l~~l~~~~~~~--G~~aylVGG~VRD~LLg~~~~D~Di~t~~~-~~~~~~~~~~~~---------~~~~~ 80 (441)
T 3h38_A 13 ERVDPKILNLFRLLGKFGDEV--NMPVYVVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFL---------PGKLV 80 (441)
T ss_dssp HHSCHHHHHHHHHHHHHHHHT--TCCEEEETHHHHHHHHTCCCCCEEEEESSC-HHHHHHHHHTTS---------CEEEE
T ss_pred HhCCHHHHHHHHHHHHHHHHc--CCeEEEEcHHHHHHHCCCCCCCeeEEeCCC-HHHHHHHHHHHc---------CCEec
Confidence 357788888888888887776 488999999999999999999999999984 666766655421 12222
Q ss_pred cCCCCCCcceEEEEEEe-cCeeeeeecccccccCCCCCCcccccCCHHHHHhcCCCCccceeeecC---CCceecCcccc
Q 008067 150 PSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNIN---TSSVEDLTGRG 225 (579)
Q Consensus 150 ~~~~~~~~~~~t~~~~~-~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTINAla~~~~---~~~i~D~~g~G 225 (579)
. +++++|+++.+ +|..+||+++|+|.|..+|++|.|+++|+++||.|||||||||||+++ .|.++|||| |
T Consensus 81 ~-----g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~~p~V~~~~l~eDl~RRDFTINAla~~~~~~~~g~liD~~g-G 154 (441)
T 3h38_A 81 K-----HDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFG-G 154 (441)
T ss_dssp C-----CSSTTEEEEEETTSCEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSS-H
T ss_pred c-----CCcCcEEEEEEeCCeEEEEecccccccCCCCCCCccCCCCHHHHHHhccchhhhhhcccCCCCCCeEeCCCC-C
Confidence 1 45679999999 789999999999999999999999999999999999999999999987 378999998 9
Q ss_pred HHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHH
Q 008067 226 IADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPV 305 (579)
Q Consensus 226 ~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~ 305 (579)
++||++|+||++++ .+|.|||+||||+||||+++||+|+++|..+|++.. ...++.++|.|||+.|+.|||.++++.
T Consensus 155 ~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~~-~~~~l~~is~eRi~~El~kll~~~~~~ 231 (441)
T 3h38_A 155 YRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAV-EEGYLERTTGPRLRQELEKILEEKNPL 231 (441)
T ss_dssp HHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHHH-HTTHHHHSCHHHHHHHHHHHHTSSCHH
T ss_pred HHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-hhchhccCCHHHHHHHHHHHHcCCCHH
Confidence 99999999999965 589999999999999999999999999999998641 235667899999999999999999999
Q ss_pred HHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCC
Q 008067 306 KAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKG 385 (579)
Q Consensus 306 ~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~g 385 (579)
.+++.|+++|++..+| |++..... ..+ ....+.......... +.......++|++|+|++.+..
T Consensus 232 ~~l~~l~~~glL~~i~--Pel~~~~~---~~~-~l~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~~~~~~------ 295 (441)
T 3h38_A 232 KSIRRMAQFDVIKHLF--PKTYYTPS---MDE-KMENLFRNIPWVEEN----FGEVDRFYAVLHVFLEFYDDES------ 295 (441)
T ss_dssp HHHHHHHHTTHHHHHS--TTCCCCHH---HHH-HHHHHHHHHHHHHHH----HCCCCHHHHHHHHHTTTCCHHH------
T ss_pred HHHHHHHHcCChHHhC--cccccchh---HHH-HHHHHHHHHHHHHhh----ccchhhHHHHHHHHhCCCCHHH------
Confidence 9999999999999999 99732111 000 011111111111111 1112334567899999875432
Q ss_pred CcccchHHHHHHHcCCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHHHHhhh
Q 008067 386 KKIPVVNYTFRDSLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKK 465 (579)
Q Consensus 386 k~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~lR~~g~ 465 (579)
...++.+|++|+++++.+..++..+..+...+.. .. +. +... .+++.++.
T Consensus 296 ------~~~~~~rl~ls~~~~~~l~~l~~~~~~~~~~l~~---~~---------~~-------~~l~-----~~l~~~~~ 345 (441)
T 3h38_A 296 ------WKEVRDRYSLRRNLINEIRHVEKSAPALLEMLSE---RV---------PA-------SFVY-----PLVKGVSN 345 (441)
T ss_dssp ------HHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHT---TC---------CG-------GGTH-----HHHTTCCH
T ss_pred ------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc---cC---------CH-------HHHH-----HHHhhcCH
Confidence 2468999999999999999998876544332211 00 00 1121 23333332
Q ss_pred hhHHHHHHHHhcCCCccCcchhhhhhhhhhhHHHHHHHHHHHHHHHcCCCcccccCcc-cChHHHHHHcCCCCCCchHHH
Q 008067 466 FWRVALLISTLLYPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLKPL-VNGKDIMNVLQLKSGGPLVRE 544 (579)
Q Consensus 466 lWr~~llla~~~~~~~~~~~~d~~~~~~~~~~~~~~y~~~~~~I~~~~L~~a~~~KPL-LnGkdIm~~Lglk~pGP~vg~ 544 (579)
. .+++ +.. ... . . ....+..++.. ....+|+ |||+|||++ |++ |||++|+
T Consensus 346 e---~l~~-~~~----~~~------~--~------~~~~l~~~l~~-----~~~~~~~~i~G~DLi~~-G~~-PGP~~G~ 396 (441)
T 3h38_A 346 E---TICH-FLA----YLS------G--E------KEGLFKSYLLK-----IKNTKLEKINGEYLIRK-GIT-SGKIIGE 396 (441)
T ss_dssp H---HHHH-HHT----TCC------H--H------HHHHHHHHHHH-----HHSSCSCSSCCHHHHTT-TCC-CSHHHHH
T ss_pred H---HHHH-HHH----hCc------c--h------HHHHHHHHHHH-----hccCCCCCCCHHHHHHc-CCC-CCcHHHH
Confidence 2 2211 111 000 0 0 11122233322 1247889 999999998 999 9999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhhh
Q 008067 545 WQQKLLAWQLAHPSGTAEECIDWMKETHLKR 575 (579)
Q Consensus 545 ~l~~llewQL~~P~~t~ee~l~~lk~~~~~~ 575 (579)
+|+++.+||+++ |++|+++|+++...+.
T Consensus 397 iL~~l~~a~ldg---t~ee~l~~v~~~~~~~ 424 (441)
T 3h38_A 397 VLEKILMKKLDG---DTRDEEEILEEVLASL 424 (441)
T ss_dssp HHHHHHHHHHHC---CSSCSSHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999876654
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=5.6e-65 Score=544.93 Aligned_cols=385 Identities=21% Similarity=0.236 Sum_probs=279.6
Q ss_pred HHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEE
Q 008067 82 CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLET 161 (579)
Q Consensus 82 ~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t 161 (579)
.|.+.++.. |+++|+|||||||+|||++++|+||+|++. + +.+.+.+. +.+.+ ++.++|
T Consensus 10 ~i~~~l~~~--g~~~y~VGG~VRD~lLg~~~~D~Di~~~~~-~----~~~~~~~~-------~~~~~-------g~~~gt 68 (404)
T 1miw_A 10 GIIQQLKQH--GYDAYFVGGAVRDLLLGRPIGDVDIATSAL-P----EDVMAIFP-------KTIDV-------GSKHGT 68 (404)
T ss_dssp HHHHHHHHT--TCCEEEESHHHHHHHHTCCCCCCEEEESSC-H----HHHHHHCS-------SEEEE-------EGGGTE
T ss_pred HHHHHHHhC--CCeEEEECHHHHHHHcCCCCCCEEEEeCCC-H----HHHHHHhh-------hhccc-------CcCCCe
Confidence 355666665 588999999999999999999999999985 4 44555442 11111 345689
Q ss_pred EEEEecCeeeeeecccccccCCCCCCc-cccc-CCHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCC
Q 008067 162 ATMKLYDLWIDFVNLRCEDYSENSRIP-TMRF-GTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239 (579)
Q Consensus 162 ~~~~~~~~~iD~~~~R~e~y~~~~r~p-~v~~-~t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~ 239 (579)
+++.++|..+||+++|+|.|+.++|+| .|+| +|+++||.||||||||||||+ +|.++||+| |++||++|+||++++
T Consensus 69 ~~v~~~~~~~ev~t~R~e~~~~~~~~p~~v~~~~~l~~Dl~RRDfTiNAla~~~-~g~l~D~~~-G~~Dl~~~~ir~~~~ 146 (404)
T 1miw_A 69 VVVVHKGKAYEVTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE-YGTIIDPFG-GREAIRRRIIRTVGE 146 (404)
T ss_dssp EEEEETTEEEEEEECEECC---------CCEECSCHHHHHHTSSBSGGGCEECT-TCCEECTTC-HHHHHHHTEECBSSC
T ss_pred EEEEECCeEEEEeeecccCCCCCCcCCcccccCCcHHHHHHhCCCCcchheeCC-CCCEeCCCC-CHHHHhCCeeeecCC
Confidence 999999999999999999999999999 5888 699999999999999999998 788999998 999999999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcE
Q 008067 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWI 319 (579)
Q Consensus 240 ~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~ 319 (579)
|..+|.|||+||||+||||+++||.|+++|.++|++. ..++.++|.|||+.||.|||.++++..+++.|+++|++..
T Consensus 147 p~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~---~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~ 223 (404)
T 1miw_A 147 AEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQN---APLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY 223 (404)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHHHHHH---GGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS
T ss_pred hHhhHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh
Confidence 8899999999999999999999999999999999875 4667889999999999999999999999999999999997
Q ss_pred eeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHc
Q 008067 320 VFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSL 399 (579)
Q Consensus 320 i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rL 399 (579)
+ |++... . +. .|..+ .+.. +. -....++||+||||+++.. ...++.+|
T Consensus 224 -l--Pe~~~~-~-~~------~~~l~------~~~~--~~-~~~~~l~~aaLlhdigk~~------------a~~~l~rL 271 (404)
T 1miw_A 224 -L--PGLAGK-E-KQ------LRLAA------AYRW--PW-LAAREERWALLCHALGVQE------------SRPFLRAW 271 (404)
T ss_dssp -S--TTCSSC-H-HH------HHHGG------GSCG--GG-CCSHHHHHHHHHHHHTCSC------------HHHHHHHT
T ss_pred -C--cchhhH-H-HH------HHHHH------HHhc--cc-cCChHHHHHHHHHhCCHHH------------HHHHHHHc
Confidence 6 997321 0 10 11000 0100 00 0124578999999998632 34689999
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHHHHhhhh-hHHHHHHHHhcC
Q 008067 400 KRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKF-WRVALLISTLLY 478 (579)
Q Consensus 400 kl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~lR~~g~l-Wr~~llla~~~~ 478 (579)
|+|+++++.|.+|+++|..+.. . ..|+ .| .+..++.. ......++..
T Consensus 272 kls~~~~~~v~~Lv~~~~~~~~--------~------~~~~-----------~~-----~l~~~~~~~~~~~~~l~~~-- 319 (404)
T 1miw_A 272 KLPNKVVDEAGAILTALADIPR--------P------EAWT-----------NE-----QLFSAGLERALSVETVRAA-- 319 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHHCCS--------G------GGCC-----------HH-----HHHHHHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHhhcc--------c------ccch-----------HH-----HHHHcCHHHHHHHHHHHHh--
Confidence 9999999999999998753110 0 0111 12 22333221 1111111100
Q ss_pred CCccCcchhhhhhhhhhhHHHHHHHHHHHHHHHcCCCcccccC-cccChHHHHHHcCCCCCCchHHHHHHHHHHHHHcCC
Q 008067 479 PTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWDLK-PLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAHP 557 (579)
Q Consensus 479 ~~~~~~~~d~~~~~~~~~~~~~~y~~~~~~I~~~~L~~a~~~K-PLLnGkdIm~~Lglk~pGP~vg~~l~~llewQL~~P 557 (579)
+ .+.... ..+..+.+.... + ..|..+ |+|||+|||+.+|++ |||++|++++++.+||++++
T Consensus 320 --------~-~~~~~~-----~~~~~~~~~~~~--~-~~~~~~~~~i~G~dL~~~lG~~-pGp~iG~~L~~l~~~~l~g~ 381 (404)
T 1miw_A 320 --------F-TGAPPG-----PWHEKLRRRFAS--L-PIKTKGELAVNGKDVIEWVGKP-AGPWVKEALDAIWRAVVNGE 381 (404)
T ss_dssp --------H-HCCCSH-----HHHHHHHHHHTT--C-SCSSGGGCSSCHHHHHHHHTCC-SSHHHHHHHHHHHHHHHTTS
T ss_pred --------h-hCCccc-----hhHHHHHHHHHH--h-hhcccCCCCCCHHHHHHHcCCC-CcHHHHHHHHHHHHHHHhCC
Confidence 0 000000 112222222222 2 345544 899999999988999 99999999999999999999
Q ss_pred CCCHHH-HHHHHHHHhhh
Q 008067 558 SGTAEE-CIDWMKETHLK 574 (579)
Q Consensus 558 ~~t~ee-~l~~lk~~~~~ 574 (579)
..|.+| +++|+++....
T Consensus 382 ~~n~~e~l~~~~~~~~~~ 399 (404)
T 1miw_A 382 VENEKERIYAWLMERNRT 399 (404)
T ss_dssp SCSCHHHHHHHHHHHHTH
T ss_pred CCCcHHHHHHHHHHhhhc
Confidence 998655 55899887553
No 3
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=3.1e-65 Score=552.55 Aligned_cols=379 Identities=23% Similarity=0.258 Sum_probs=235.4
Q ss_pred HHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEE
Q 008067 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETA 162 (579)
Q Consensus 83 l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~ 162 (579)
|.+.++.. |+++|+|||||||+|||++++|+||+|++. + +++.+.|...|. .++ |..++.++|+
T Consensus 62 i~~~l~~~--g~~~ylVGG~VRD~LLg~~~~D~Di~~~~~-p----~~~~~~~~~~g~------~~~---~~~g~~~gt~ 125 (448)
T 1ou5_A 62 LTELFVKE--NHELRIAGGAVRDLLNGVKPQDIDFATTAT-P----TQMKEMFQSAGI------RMI---NNRGEKHGTI 125 (448)
T ss_dssp HHHHHHHT--TCCEEEESTTTHHHHHTSCCSSCEEEESSC-H----HHHHHHHTTTTC------CBC---CCCCTTCCCE
T ss_pred HHHHHHhc--CCeEEEeCHHHHHHHcCCCCCCEEEEeCCC-H----HHHHHHHHHcCC------ccc---cCcCcccceE
Confidence 45555664 588999999999999999999999999985 4 445555554332 122 2124556999
Q ss_pred EEEecCeeeeeecccccccCCCCCCcccccC-CHHHHHhcCCCCccceeeecCCCceecCccccHHHhhcCceecCCCCC
Q 008067 163 TMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPK 241 (579)
Q Consensus 163 ~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~-t~~eDl~RRDfTINAla~~~~~~~i~D~~g~G~~DL~~g~IR~~~~~~ 241 (579)
+++++|..+||+++|+|.|+ +||+|+|+|+ ++++||.||||||||||||+ +|.++||+| |++||++|+||++++|.
T Consensus 126 ~v~~~~~~~ev~t~R~~~~~-~~r~~~v~~~~~l~eDl~RRDFTINAla~~~-~g~l~D~~g-G~~DL~~~~IR~v~d~~ 202 (448)
T 1ou5_A 126 TARLHEENFEITTLRIDVTT-DGRHAEVEFTTDWQKDAERRDLTINSMFLGF-DGTLFDYFN-GYEDLKNKKVRFVGHAK 202 (448)
T ss_dssp EECTTTTCEEEEECCS-------------SSCCSSCCGGGSSBGGGSCEECS-SCBEECSSS-HHHHTTTTCCCBSSTTT
T ss_pred EEEECCEEEEEEeecccccc-cCCCCccccCccHHHHHHHcCCChhheeECC-CCCEeCCCC-CHHHHhCCeEEecCChH
Confidence 99999999999999999885 7999999997 79999999999999999999 789999998 99999999999999999
Q ss_pred CCcccCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCc
Q 008067 242 ATFLDDPLRVLRAIRFGARF--DF-ILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFW 318 (579)
Q Consensus 242 ~~f~eDPlRiLRa~Rfaarl--gf-~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~ 318 (579)
++|.|||+||||+||||+++ || .|+++|.++|++. ...+.++|.|||+.||.|||.++++..+|+.|+++|++.
T Consensus 203 ~rF~EDPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~---~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~ 279 (448)
T 1ou5_A 203 QRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAEN---AKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAP 279 (448)
T ss_dssp TTSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHS---CTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGG
T ss_pred HhhhhCHHHHHHHHHHHHHcCcCCCCcCHHHHHHHHHH---HHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCce
Confidence 99999999999999999999 96 9999999999876 456688999999999999999999999999999999999
Q ss_pred Ee-eeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHH
Q 008067 319 IV-FKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRD 397 (579)
Q Consensus 319 ~i-~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~ 397 (579)
.+ | |++.. . .+ ..|+ .... .. . ....+++|||||||+++. ..++.
T Consensus 280 ~i~l--Pe~~~-i--~~-----~~~~------l~~~-~~-~--~~~~~l~lAaLlhDi~ka--------------~~i~~ 325 (448)
T 1ou5_A 280 YIGL--PANAS-L--EE-----FDKV------SKNV-DG-F--SPKPVTLLASLFKVQDDV--------------TKLDL 325 (448)
T ss_dssp GGTC--CCCSC-C--HH-----HHHH------HHHH-TT-S--CCCHHHHHGGGCCSTTTT--------------HHHHH
T ss_pred EecC--cchhh-H--HH-----HHHH------HHHH-Hh-c--CCCHHHHHHHHhcChHHH--------------HHHHH
Confidence 99 8 99732 1 11 1111 1111 11 1 234578999999999763 36799
Q ss_pred HcCCCcccHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCcchhhHHHHHHHHHHhhhhhHHHHHHHHhc
Q 008067 398 SLKRKASDAETVMNIHRVLEKFLSLIPSLVSAEDVKVNDGQWSKELVDVPDASKLRVLTGFLLREIKKFWRVALLISTLL 477 (579)
Q Consensus 398 rLkl~~~d~~~V~~Lv~~h~~~~~li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~R~~lG~~lR~~g~lWr~~llla~~~ 477 (579)
+||+|+++++.|.+|+++|..+... .++++ + . ..+-.++..+|.......+.+..
T Consensus 326 rLkls~~~~~~v~~Lv~~h~~~~~a--------------~~~~d-------~-~--~~i~~~l~~~g~e~~l~~L~~~a- 380 (448)
T 1ou5_A 326 RLKIAKEEKNLGLFIVKNRKDLIKA--------------TDSSD-------P-L--KPYQDFIIDSREPDATTRVCELL- 380 (448)
T ss_dssp HHCCCTTHHHHHHHHTTTTTTTSCC--------------CSSSS-------T-T--HHHHHHHHHCCSTTHHHHHHHHH-
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhcc--------------cccCc-------c-H--HHHHHHHHHcChHHHHHHHHHHC-
Confidence 9999999999999999887542100 01111 1 0 11224566666544333333211
Q ss_pred CCCccCcchhhhhhhhhhhHHHHHHHHHHHHHHHcCCCcccc-cCcccChHHHHHHcCCCCCCchHHHHHHHHHHHHHcC
Q 008067 478 YPTHVDHTEDMLNQHFQLDSKRDLFVAAEKAITKLGLDEVWD-LKPLVNGKDIMNVLQLKSGGPLVREWQQKLLAWQLAH 556 (579)
Q Consensus 478 ~~~~~~~~~d~~~~~~~~~~~~~~y~~~~~~I~~~~L~~a~~-~KPLLnGkdIm~~Lglk~pGP~vg~~l~~llewQL~~ 556 (579)
+. ..+..+.+++ +.|. .+|.|||+|||+ +|++ |||++|++++++.++|+++
T Consensus 381 ---------~~-----------~~~~~~~~~l------~~~~~~~~~i~G~dL~~-~G~~-pGp~iG~~L~~l~~a~l~g 432 (448)
T 1ou5_A 381 ---------KY-----------QGEHCLLKEM------QQWSIPPFPVSGHDIRK-VGIS-SGKEIGALLQQLREQWKKS 432 (448)
T ss_dssp ---------HH-----------HTCHHHHHHH------TTCCC-------------------------------------
T ss_pred ---------Ch-----------hhHHHHHHHH------HhcccCCCCCCHHHHHH-CCCC-ccHHHHHHHHHHHHHHHhC
Confidence 00 0111122222 1233 458999999998 7999 9999999999999999999
Q ss_pred CCCC-HHHHHHHHHH
Q 008067 557 PSGT-AEECIDWMKE 570 (579)
Q Consensus 557 P~~t-~ee~l~~lk~ 570 (579)
+..| ++++++|+++
T Consensus 433 ~~~n~~e~ll~~~~~ 447 (448)
T 1ou5_A 433 GYQMEKDELLSYIKK 447 (448)
T ss_dssp ---------------
T ss_pred CCCCCHHHHHHHHhh
Confidence 9875 7899999874
No 4
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=1.2e-61 Score=517.89 Aligned_cols=298 Identities=23% Similarity=0.284 Sum_probs=231.9
Q ss_pred HHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEE
Q 008067 83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETA 162 (579)
Q Consensus 83 l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~ 162 (579)
+.+++++. |+++|+|||||||+|||++++|+||+|++. +.+|++.+.+.+. .. +. + +++++|+
T Consensus 2 ~~~~~~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~~~~~~~~~~---~~----~~-~------~~~~~t~ 64 (390)
T 1vfg_A 2 VGQIAKEM--GLRAYIVGGVVRDILLGKEVWDVDFVVEGN-AIELAKELARRHG---VN----VH-P------FPEFGTA 64 (390)
T ss_dssp HHHHHHHT--TCCEEEETHHHHHHHTTCCCSEEEEEESSC-HHHHHHHHHHHHT---CC----CE-E------ETTTTEE
T ss_pred hHHHHHHc--CCeEEEEChHHHHHHcCCCCCCEEEEEeCC-hHHHHHHHHHHcC---Cc----ee-e------cCCCcEE
Confidence 34566665 588999999999999999999999999994 7788888888662 11 11 1 2456899
Q ss_pred EEEecCeeeeeecccccccCCCCCCcccccCCHHHHHhcCCCCccceeeecCC---CceecCccccHHHhhcCceecCCC
Q 008067 163 TMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT---SSVEDLTGRGIADLKHGKIVTPLP 239 (579)
Q Consensus 163 ~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRDfTINAla~~~~~---~~i~D~~g~G~~DL~~g~IR~~~~ 239 (579)
++.++|..+||+++|+|.|+.+|++|+|+++|+++||.||||||||||||+++ |.++||+| |++||++|+||++++
T Consensus 65 ~v~~~~~~~e~~~~R~e~~~~~~~~p~v~~~~l~~Dl~RRDfTiNAla~~~~~~~~g~l~D~~~-G~~DL~~~~ir~v~~ 143 (390)
T 1vfg_A 65 HLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFG-GLRDLKDKVIRVLHP 143 (390)
T ss_dssp EEEETTEEEEEEECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSC-HHHHHHTTEECBSST
T ss_pred EEEECCEEEEEeccCcccCCCCCCCCccCCCCHHHHHhhCCCchhheeecccCCCCCeEEeCCC-CHHHHhCCeeEeCCc
Confidence 99999999999999999999999999999999999999999999999999864 78999998 999999999999964
Q ss_pred CCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcE
Q 008067 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWI 319 (579)
Q Consensus 240 ~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El~kiL~~~~~~~~l~~l~~~gll~~ 319 (579)
.+|.|||+||||+||||+++||.|+++|.++|++.. ...++.++|.||++.||.|||.++++..+++.|+++|+|..
T Consensus 144 --~~F~eDPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~-~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~ 220 (390)
T 1vfg_A 144 --VSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAV-NLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEE 220 (390)
T ss_dssp --THHHHCTTHHHHHHHHHHHHTCEECHHHHHHHHHHH-HTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHH
T ss_pred --cchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHH
Confidence 799999999999999999999999999999998751 12367889999999999999999999999999999999999
Q ss_pred eeeCCCCCCchhhcccchhhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHc
Q 008067 320 VFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSL 399 (579)
Q Consensus 320 i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rL 399 (579)
+| |++.... +..+ ....++............ ....+.+++|||||||+++.. ...++.+|
T Consensus 221 ~l--Pe~~~~~---~~~q-~l~~~~~~~~~~~~~~~~--~~~~~~~l~laaLlhdi~~~~------------a~~~~~rL 280 (390)
T 1vfg_A 221 II--EGFQWNE---KVLQ-KLYALRKVVDWHALEFSE--ERIDYGWLYLLILISNLDYER------------GKHFLEEM 280 (390)
T ss_dssp HS--TTCCCCH---HHHH-HHHHHHHHHHHHHHHGGG--SCCCHHHHHHHHHHCSCCSST------------THHHHHHT
T ss_pred Hh--Hhhhhhh---hHHH-HHHHHHHHHHHhHHhhhc--cccchHHHHHHHHHccCCHHH------------HHHHHHHc
Confidence 99 9973211 1111 111111111111100000 112345789999999998632 24789999
Q ss_pred CCCcccHHHHHHHHHHHHHHHh
Q 008067 400 KRKASDAETVMNIHRVLEKFLS 421 (579)
Q Consensus 400 kl~~~d~~~V~~Lv~~h~~~~~ 421 (579)
++|+++++.|.+|+++|..+..
T Consensus 281 ~ls~~~~~~v~~Lv~~h~~~~~ 302 (390)
T 1vfg_A 281 SAPSWVRETYKFMKFKLGSLKE 302 (390)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876554
No 5
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=8.9e-56 Score=474.34 Aligned_cols=317 Identities=23% Similarity=0.321 Sum_probs=241.4
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCceE
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFG 147 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~ 147 (579)
....+++.-..|++.| +.. |+++|+|||||||+|||++|+|+||||++. + +++.+.|+...
T Consensus 13 ~~~~~~~~~~~v~~~l----~~~--G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~-p----~~~~~~f~~~~-------- 73 (415)
T 3aql_A 13 SRKDISENALKVMYRL----NKA--GYEAWLVGGGVRDLLLGKKPKDFDVTTNAT-P----EQVRKLFRNCR-------- 73 (415)
T ss_dssp CCGGGSCSCHHHHHHH----HHT--TCCEEEETHHHHHHHHSSCCSCCEEEESSC-H----HHHHHHTTTSC--------
T ss_pred ChHhCCHHHHHHHHHH----HHC--CCeEEEECHHHHHHHcCCCCCCEEEEcCCC-H----HHHHHHhhhCe--------
Confidence 3445677777765554 444 588999999999999999999999999985 4 44555553210
Q ss_pred EecCCCCCCcceEEEEEEecCeeeeeecccccccCC-----------CCCCc-ccccCCHHHHHhcCCCCccceeeecCC
Q 008067 148 VIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSE-----------NSRIP-TMRFGTAEEDAYRRDLTINSLFYNINT 215 (579)
Q Consensus 148 ~i~~~~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~-----------~~r~p-~v~~~t~~eDl~RRDfTINAla~~~~~ 215 (579)
.+ ++.|+|+++.+++..+|++++|++.|.. +|+++ .+.++|+++||.||||||||||||+++
T Consensus 74 ~~------g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl~RRDFTINAla~~~~~ 147 (415)
T 3aql_A 74 LV------GRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVAD 147 (415)
T ss_dssp CC------CCSSSCCEEESSSCEEEEEECCC-----------------------CCCCCHHHHHTTSSBSGGGCEEETTT
T ss_pred Ee------cccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHHhcCCccceeEEEeCCC
Confidence 11 3456888888888999999999987642 34553 467899999999999999999999999
Q ss_pred CceecCccccHHHhhcCceecCCCCCCCcccCHHHHHHHHHHHHHcCCCCCHHHHHHHHchHHHHHHhccCCHHHHHHHH
Q 008067 216 SSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEI 295 (579)
Q Consensus 216 ~~i~D~~g~G~~DL~~g~IR~~~~~~~~f~eDPlRiLRa~Rfaarlgf~i~~~t~~ai~~~~~~~~l~~~vs~eRi~~El 295 (579)
+.++||+| |++||++|+||++++|..+|.|||+||||+||||+++||.|+++|.++|++. ..++..+|.||++.||
T Consensus 148 ~~l~D~~g-G~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~---~~~l~~is~eRi~~E~ 223 (415)
T 3aql_A 148 FTVRDYVG-GMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRL---ATLLNDIPPAHLFEES 223 (415)
T ss_dssp CCEECSSS-HHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHH---GGGGGGSCHHHHHHHH
T ss_pred CeeeCCCC-CHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhhhcCChHHHHHHH
Confidence 99999998 9999999999999988889999999999999999999999999999999875 5677889999999999
Q ss_pred HHhhcCCCHHHHHHHHHHcCCCcEeeeCCCCCCchhhcccchhhhhHHHHHHHHH-HHhhccCCC-cccHHHHHHHhhhh
Q 008067 296 DLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLT-QLIGSSTFN-DDQRRLSQYAALFL 373 (579)
Q Consensus 296 ~kiL~~~~~~~~l~~l~~~gll~~i~~~Pe~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~-~e~~~ll~LAaLlh 373 (579)
.|||.++++..+|++|+++|+|..+| |++.. .. +..+. +|.++++... ..+...... ...+..++||||||
T Consensus 224 ~kiL~~~~~~~~l~~l~~~GlL~~~l--Pe~~~-i~--~~~q~--~h~~~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH 296 (415)
T 3aql_A 224 LKLLQAGYGYETYKLLCEYHLFQPLF--PTITR-YF--TENGD--SPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 296 (415)
T ss_dssp HHHHTSSCHHHHHHHHHHTTCSTTTC--HHHHT-TC--CSSSC--CHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTH
T ss_pred HHHHcCCCHHHHHHHHHHcCChHHhc--hhHHH-Hh--ccCCc--chHHHHHHHHHHHHHHHHhcCCCCCHHHHHhHhcC
Confidence 99999999999999999999999999 99732 11 22222 3444443211 111000000 12346789999999
Q ss_pred -cccCcccc-cCC-CC----cccchHH----HHHHHcCCCcccHHHHHHHHHHHHHHH
Q 008067 374 -PFRNTTYK-DNK-GK----KIPVVNY----TFRDSLKRKASDAETVMNIHRVLEKFL 420 (579)
Q Consensus 374 -digK~~~~-~~~-gk----~h~~~~~----~i~~rLkl~~~d~~~V~~Lv~~h~~~~ 420 (579)
|++|+... ... |. .|+..++ .+|.++++++++++.|.+|+..|..|.
T Consensus 297 ~di~K~~~~~~~~~G~~~~~~h~~~ga~~a~~~~~rl~l~~r~~~~v~~lv~lq~rL~ 354 (415)
T 3aql_A 297 YPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMS 354 (415)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Confidence 99997431 112 32 4776665 588999999999999999999886654
No 6
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=95.25 E-value=0.013 Score=57.14 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHH
Q 008067 338 FCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIH 413 (579)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv 413 (579)
++..|+..++.....+... . +....++.+||+|||+|+..+ .+|+..++ .++.+++++.+.++.|+++|
T Consensus 25 H~~~H~~rV~~~a~~ia~~-~-~~d~~~l~~AAlLHDig~~k~-----~~h~~~ga~~a~~~L~~~g~~~~~i~~V~~~I 97 (223)
T 3djb_A 25 HDWYHIRRVHKMAISLSEQ-E-GGNRFIIEMAALLHDVADEKL-----NESEEAGMKKVSDWLEELHVEEEESKHVLHII 97 (223)
T ss_dssp TTHHHHHHHHHHHHHHHTT-T-CSCHHHHHHHHTTHHHHC--C-----CSSSTTTHHHHHHHHHHTCCCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHhhcccccc-----CCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4556666666655555322 1 235678899999999998653 13444443 67888999999999999999
Q ss_pred HHH
Q 008067 414 RVL 416 (579)
Q Consensus 414 ~~h 416 (579)
.+|
T Consensus 98 ~~H 100 (223)
T 3djb_A 98 ANM 100 (223)
T ss_dssp TCC
T ss_pred HHh
Confidence 876
No 7
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=95.12 E-value=0.019 Score=55.21 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 339 CTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...|+..+......+.... +....++.+||||||+|+...... +...+.....++.+++++.+.++.|+++|.+|
T Consensus 26 ~~~H~~rV~~~a~~ia~~~--~~d~~~v~~AAlLHDig~~~~~~~-~~~~a~~a~~~L~~~g~~~~~~~~V~~~I~~H 100 (209)
T 3b57_A 26 DWSHIKRVWKLSKEIQSKE--GGDLFTIELAALFHDYSDIKLTTD-EQEATKTLINWMETKEIPSELIKKIIRIIQSV 100 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CSCHHHHHHHHHHTTCCC--------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhccCcccCCCc-hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 3445554544444332210 124567899999999999764221 11112233467888999999999999999987
No 8
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=94.82 E-value=0.022 Score=55.50 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHH----HHHHHcCCCcccHHHHHHHH
Q 008067 338 FCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDSLKRKASDAETVMNIH 413 (579)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~rLkl~~~d~~~V~~Lv 413 (579)
++..|+..++.+...+... . +....++.+||+|||+|+..+. +++..++ .++.+++++.+.++.|+++|
T Consensus 25 H~~~H~~rV~~~a~~ia~~-~-~~d~~~l~~AalLHDig~~k~~-----~~~~~ga~~a~~~L~~~g~~~~~i~~V~~~I 97 (223)
T 3dto_A 25 HDWYHIRRVTLMAKAIGEQ-E-KVDVFVVQIAALFHDLIDDKLV-----DDPETAKQQLIDWMEAAGVPSQKIDHTMDII 97 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHH-T-TCCHHHHHHHHHHHSTTC------------CHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHhhccccccC-----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4456666555554444321 1 2346788999999999987532 2344443 57888999999999999999
Q ss_pred HHH
Q 008067 414 RVL 416 (579)
Q Consensus 414 ~~h 416 (579)
.+|
T Consensus 98 ~~H 100 (223)
T 3dto_A 98 NTI 100 (223)
T ss_dssp HCC
T ss_pred HHc
Confidence 986
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=94.71 E-value=0.018 Score=55.97 Aligned_cols=74 Identities=9% Similarity=0.025 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHh-hccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 339 CTAYLDAAWDLTQLI-GSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 339 ~~~~~~~~~~l~~~l-~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...|+..++.....+ ... . +....++.+||||||+|+..+. .+...+.....++.+++++++.++.|+++|.+|
T Consensus 26 ~~~H~~rV~~~a~~i~a~~-~-~~d~~~l~lAAlLHDigk~~~~--~~~~ga~~a~~~L~~~g~~~~~i~~V~~~I~~H 100 (225)
T 2qgs_A 26 DIAHVERVYNNACYIAKRE-N-ITDTLVIELSSLLHDTVDSKLT--DEILAYDQLKQFLSTLDLSSEISQQVLYIIKHM 100 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T-CSCCHHHHHHHHHTTTTCCSSS--CHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhhc-c-CCCHHHHHHHHHHHcCCCCCCC--cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 345555455444444 321 1 1235678999999999996432 110011222357888999999999999999976
No 10
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=94.68 E-value=0.013 Score=57.20 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 339 CTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...|+..++.....+.... +....++.+||+|||+|+..+.. .+...+.....++..++++.+.++.|+++|.+|
T Consensus 31 ~~~H~~rV~~~a~~ia~~~--~~d~~ll~lAAlLHDigk~k~~~-~~~~ga~~a~~~L~~~g~~~~~~~~V~~~I~~H 105 (231)
T 2pjq_A 31 GRDHLQRVNRLARRLAKDE--GANLNLTLAAAWLHDVIDDKLMA-NPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHM 105 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHC----------CHHHHHHHHHTTTCCHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHcCCcccCCC-hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 4455555555444443210 12457889999999999964321 112233444567888999999999999999876
No 11
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=94.10 E-value=0.014 Score=57.47 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=49.0
Q ss_pred hhhhHHHHHHHHHHHhhccCCCcccHHHHHHHhhhhcccCcccccCCCCcccchHH----HHHHH--cCCCcccHHHHHH
Q 008067 338 FCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKIPVVNY----TFRDS--LKRKASDAETVMN 411 (579)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~e~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~----~i~~r--Lkl~~~d~~~V~~ 411 (579)
|...|+..++.....+... . +....++.+||+|||+|+.......+..|+..|+ .++.+ ++++.++++.|++
T Consensus 25 H~~~H~~rV~~~a~~ia~~-~-~~d~~~~~~AalLHDig~~~~~~~~~~~H~~~ga~~A~~~L~~~~~g~~~e~i~~V~~ 102 (239)
T 3gw7_A 25 HDVCHFRRVWATAQKLAAD-D-DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH 102 (239)
T ss_dssp --CCHHHHHHHHHHHHTTT-S-CSCTTHHHHHHHHTTTTC--------CCSSHHHHHHHHHHHHHHTTSSCTTTTTSTTT
T ss_pred ccHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHhhcccccccCCccccHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 4556666666555555321 1 1345678999999999996321111235776665 47778 9999999999999
Q ss_pred HHHHH
Q 008067 412 IHRVL 416 (579)
Q Consensus 412 Lv~~h 416 (579)
+|.+|
T Consensus 103 ~I~~H 107 (239)
T 3gw7_A 103 AIAAH 107 (239)
T ss_dssp GGGSS
T ss_pred HHHHc
Confidence 99876
No 12
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=93.96 E-value=0.79 Score=43.25 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCCCeEEEechhhHhh----hhCCC----CCCeEEEEcC-CChHHHHHHHHHHHHhcCCccCCceEEecCC
Q 008067 82 CLLNTLRHFNLETVLRVAGGWVRDK----LLGKD----CYDIDIALDN-MMGSEFATKVAEYLSATGETAPSGFGVIPSN 152 (579)
Q Consensus 82 ~l~~~~~~~~~~~~~~lVGG~VRD~----LLg~~----~~DiDi~~~~-~~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~ 152 (579)
.+++.++..++. ..||++|+||.. |-|++ .+|||++--. ....+--..+.+.+...-... .+-| .|
T Consensus 23 ~iL~~~~~L~Lp-d~~laAG~vrn~VWn~L~g~~~~~~i~DiDviYFD~d~s~e~e~~~e~~L~~~~p~~--~weV--kN 97 (191)
T 2la3_A 23 AILTIIRDLGLK-DSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFDPDFSYEETLLLEKKLREDFPQY--QWEL--KN 97 (191)
T ss_dssp HHHHHHHHTCCS-SCEEETHHHHHHHHGGGTTSCTTCCCSEEEEEECCTTSCHHHHHHHHHHHHHHCTTS--EEEE--EE
T ss_pred HHHHHHHHcCCc-hhhhhhhhhHhhHHHHhcCCCCCCCCCceeEEEECCCCCHHHHHHHHHHHHHhCCCC--CEEE--Ee
Confidence 456667777753 689999999965 66765 4899998854 222222233444444322111 0111 01
Q ss_pred CCCCcceEEEEEEecCeeeeeecccccccCCCCCCcccccCCHHHHHhcCC-CCccceeeecCCC---ceecCccccHHH
Q 008067 153 PDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRD-LTINSLFYNINTS---SVEDLTGRGIAD 228 (579)
Q Consensus 153 ~~~~~~~~t~~~~~~~~~iD~~~~R~e~y~~~~r~p~v~~~t~~eDl~RRD-fTINAla~~~~~~---~i~D~~g~G~~D 228 (579)
...-|+ ++ .+.-| + +=-+|+..+= =|.-|++..+..+ +++=|+ |++|
T Consensus 98 -QArmHl-----------------~~-----~~~~P---y-~Ss~dAis~wpe~~TAvGvrl~~~~~lel~AP~--Gl~d 148 (191)
T 2la3_A 98 -QVYMHQ-----------------HS-----PHTAS---Y-TSSRDAMSKYPERCTAVGLRLNEELDFELYVPY--GLED 148 (191)
T ss_dssp -STTTTS-----------------SS-----SSCCC---C-SSHHHHHTTSSSTTTSCEEECCTTSCCEEECTT--CTHH
T ss_pred -ceeccc-----------------CC-----CCCCC---C-cCHHHHHHhchhhheeEEEEECCCCcEEEECCc--CHHH
Confidence 001111 11 01111 1 2246777776 4888888887653 477787 8999
Q ss_pred hhcCceec
Q 008067 229 LKHGKIVT 236 (579)
Q Consensus 229 L~~g~IR~ 236 (579)
|-+++||.
T Consensus 149 lf~~~vrp 156 (191)
T 2la3_A 149 ILNFQVRP 156 (191)
T ss_dssp HHTTEECC
T ss_pred HhcCeeec
Confidence 99999994
No 13
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=93.45 E-value=0.039 Score=53.24 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=41.3
Q ss_pred cHHHHHHHhhhhcccCcccccCCCCcccchHHH----HHHHcCCCcccHHHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYKDNKGKKIPVVNYT----FRDSLKRKASDAETVMNIHRVLE 417 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~----i~~rLkl~~~d~~~V~~Lv~~h~ 417 (579)
....+.+||||||+|++... ..+..|+..|+. ++..++++.+.++.|+.+|++|.
T Consensus 55 d~~~l~~AaLLHDIg~~~~~-~~~~~H~~~ga~~a~~~L~~~~~~~~~i~~v~~~I~~H~ 113 (220)
T 2pq7_A 55 DLQKAIIAALLHDIKRPHEA-LTGVDHAESGAEYASGLLPTMGFDISFVAEVSKAIRSHR 113 (220)
T ss_dssp CHHHHHHHHHHTTTTHHHHH-HHCCCHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcCCCcccC-CCcCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 45678999999999765321 124578888874 44478999999999999999874
No 14
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=92.66 E-value=0.19 Score=46.12 Aligned_cols=52 Identities=35% Similarity=0.592 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCCeEEEechhhHhhhhCC---CCCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 008067 82 CLLNTLRHFNLETVLRVAGGWVRDKLLGK---DCYDIDIALDNMMGSEFATKVAEYLSATG 139 (579)
Q Consensus 82 ~l~~~~~~~~~~~~~~lVGG~VRD~LLg~---~~~DiDi~~~~~~~~~f~~~~~~~~~~~g 139 (579)
.+++.++.++ ...+|+|||-=|+++|+ +-.||||.+.... ++.+.+.|...|
T Consensus 13 evl~~l~~~~--v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d----~~~l~~~L~~~G 67 (161)
T 4e8j_A 13 YILDLFEHMK--VTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQH----TQKVIQKLEDIG 67 (161)
T ss_dssp HHHHHHHHHT--CCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGG----HHHHHHHHHHTT
T ss_pred HHHHHHHhCC--CcEEEEcHhhhhHhcCCCCCcCCCeEEeecHHh----HHHHHHHHHHCC
Confidence 4556666654 77899999999999995 4579999997543 356677777765
No 15
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=90.40 E-value=1.9 Score=43.95 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=61.4
Q ss_pred cceecChhHHHHHH----HHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCCh----HHHHHHHHHHHHhcC
Q 008067 68 DKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG----SEFATKVAEYLSATG 139 (579)
Q Consensus 68 ~~i~l~~~e~~~~~----~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~----~~f~~~~~~~~~~~g 139 (579)
..+.-|++|....+ .|.++++..-.+.++++.|-+++. ++.+..|||+++....+ .++...+.+.+++.+
T Consensus 30 ~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g--~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~ 107 (323)
T 3nyb_A 30 AYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTD--LYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKN 107 (323)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTT--CCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTT
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccC--CCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCC
Confidence 44556777775554 455555665557899999999997 45577999999976532 235566777777654
Q ss_pred CccCCceEEecCCCCCCcceEEEEEE--ecCeeeeee
Q 008067 140 ETAPSGFGVIPSNPDQSKHLETATMK--LYDLWIDFV 174 (579)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~t~~~~--~~~~~iD~~ 174 (579)
.. ..+.+|.. ....+++++ ..|+.+|++
T Consensus 108 ~~--~~v~~I~~-----ArVPIIk~~~~~~gi~vDIs 137 (323)
T 3nyb_A 108 LA--TEVEVVAK-----ARVPIIKFVEPHSGIHIAVS 137 (323)
T ss_dssp SC--SSCEEEES-----SSCEEEEEEETTTTEEEEEE
T ss_pred Cc--eEEEEEec-----cCCCEEEEEEcCCCceEEEE
Confidence 21 23444431 233455554 346777765
No 16
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=88.43 E-value=1.2 Score=41.09 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEechhhHhhhhCC--CCCCeEEEEcCCChHHHHHHHHHHHHhcC
Q 008067 78 KIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK--DCYDIDIALDNMMGSEFATKVAEYLSATG 139 (579)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~--~~~DiDi~~~~~~~~~f~~~~~~~~~~~g 139 (579)
..+..+.+.|+.. +.. |.+||..--.+-|. .++||||.++.. =++.+.+.|...|
T Consensus 20 ~~L~~i~~~L~~~--~V~-~~l~Gs~Al~~~G~~~~~~DIDi~i~~~----da~~~~~~L~~~g 76 (169)
T 2fcl_A 20 RVLRXIYDRLXNE--XVN-WVVTGSLSFALQGVPVEVHDIDIQTDEE----GAYEIERIFSEFV 76 (169)
T ss_dssp HHHHHHHHHHTTS--SCC-EEEEHHHHHHHTTCCCCCCSEEEEECHH----HHHHHHHHTGGGE
T ss_pred HHHHHHHHHHHhc--CCC-EEEeHHHHHHHcCCCCCCCccEEEeccc----CHHHHHHHHHHHh
Confidence 4444455555544 354 45555555588885 589999999753 2567777776654
No 17
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=84.34 E-value=1.7 Score=40.60 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=32.9
Q ss_pred HHHHHHhhhhcccCccccc-------------------CCCCcccchHHHHHHH-cCCCcccHHHHHHHHHHH
Q 008067 364 RLSQYAALFLPFRNTTYKD-------------------NKGKKIPVVNYTFRDS-LKRKASDAETVMNIHRVL 416 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~~-------------------~~gk~h~~~~~~i~~r-Lkl~~~d~~~V~~Lv~~h 416 (579)
..+.+|+||||+||....+ ..++.|+.+|+.+... .+++.+ .|...|++|
T Consensus 43 ~~~~~AgLLHDiGk~~~~~~il~~~~~~~~~l~~~E~~~~~~~H~~~Ga~il~~~~~~~~~---~i~~aI~~H 112 (190)
T 3ccg_A 43 EKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAKKVIGIDDE---DVLNAIEFH 112 (190)
T ss_dssp HHHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHHHTTCCCCH---HHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCHHHHhHHHcchHHHHHHHHHHhcCCCcH---HHHHHHHHh
Confidence 3578999999999975410 2245689999987777 788432 344445544
No 18
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=79.12 E-value=2.1 Score=39.82 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=32.4
Q ss_pred HHHHHHhhhhcccCcccc-----------------c-CCCCcccchHHHHHHH-cCCCcccHHHHHHHHHHH
Q 008067 364 RLSQYAALFLPFRNTTYK-----------------D-NKGKKIPVVNYTFRDS-LKRKASDAETVMNIHRVL 416 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~-----------------~-~~gk~h~~~~~~i~~r-Lkl~~~d~~~V~~Lv~~h 416 (579)
..+.+|+||||+||.... + ..++.|+.+|+.+.+. .+++.+ .|...|++|
T Consensus 42 ~~~~~agLLHDIGk~~~~~~il~~~~~~~~~l~~~e~~~~~~H~~~G~~il~~~~~~~~~---~i~~aI~~H 110 (188)
T 2o08_A 42 QKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDE---DVLQAIRFH 110 (188)
T ss_dssp HHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHHHHHHHHCCCCH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCHHHHHHHhhHHHHHHHHHHHccCCChH---HHHHHHHHh
Confidence 357899999999998321 0 1134588889877776 888432 344445544
No 19
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=77.05 E-value=13 Score=38.91 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=48.9
Q ss_pred eecccceecChhHHHHHH----HHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCCCh---HHHHHHHHHHHH
Q 008067 64 VQVRDKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMG---SEFATKVAEYLS 136 (579)
Q Consensus 64 ~~~~~~i~l~~~e~~~~~----~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~~---~~f~~~~~~~~~ 136 (579)
.++-..+..|++|..... .|.++++..-.+..++++|-+++..- .+..|||+++....+ .++..++.+.++
T Consensus 49 ~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~--~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~ 126 (405)
T 4e8f_A 49 YEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLA--LKNSDMDLCVLMDSRVQSDTIALQFYEELI 126 (405)
T ss_dssp HHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCC--BSSCCEEEEEECCC---CTTHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCC--CCCCCEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 334456677888876555 44555555556789999999999874 456799998865432 235566777676
Q ss_pred hc
Q 008067 137 AT 138 (579)
Q Consensus 137 ~~ 138 (579)
..
T Consensus 127 ~~ 128 (405)
T 4e8f_A 127 AE 128 (405)
T ss_dssp HT
T ss_pred hc
Confidence 53
No 20
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=73.61 E-value=2.3 Score=39.93 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=31.9
Q ss_pred HHHHHHhhhhcccCccccc----------------C--CCCcccchHHHHHHH-cCCCcccHHHHHHHHHHH
Q 008067 364 RLSQYAALFLPFRNTTYKD----------------N--KGKKIPVVNYTFRDS-LKRKASDAETVMNIHRVL 416 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~~----------------~--~gk~h~~~~~~i~~r-Lkl~~~d~~~V~~Lv~~h 416 (579)
..+.+|+||||+||....+ + .++.|+.+|+.+.+. .+++.+ .|...|++|
T Consensus 50 ~~~~~AgLLHDIGK~~~~~~il~~~~~~~~~l~~~E~~~~~~H~~~G~~ll~~~~~~~~~---~i~~aI~~H 118 (196)
T 2ogi_A 50 EKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQ---DILAAIAKH 118 (196)
T ss_dssp HHHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTHHHHHHHHSCCCCH---HHHHHHHTT
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHccCCCcH---HHHHHHHHh
Confidence 4578999999999983210 0 123488888877776 888432 344455544
No 21
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=69.57 E-value=18 Score=39.13 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCCeEEEechhhHhhhhCCCCCCeEEEEcCCC---hHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecC
Q 008067 92 LETVLRVAGGWVRDKLLGKDCYDIDIALDNMM---GSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYD 168 (579)
Q Consensus 92 ~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~~---~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~ 168 (579)
.+.+++++|-+.-... .+..|||+++-+.. ..+|...+.+.+++... . ..+..|. ....-+.++...|
T Consensus 93 ~~~~v~~FGS~~lG~~--~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~-v-~~v~~I~-----~A~VPIIK~~~~g 163 (514)
T 1q79_A 93 VGGKIFTFGSYRLGVH--TKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEE-V-KDLRAVE-----EAFVPVIKLCFDG 163 (514)
T ss_dssp CBCEEEEEHHHHHTCC--CTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTT-E-EEEEEET-----TSSSCEEEEEETT
T ss_pred CCceEEEeeeeccCCC--CCCCceeEEEecCCcCCHHHHHHHHHHHHhcCcc-C-ceEEEec-----CCcccEEEEEECC
Confidence 4688998887765544 46699999876542 24565667777765321 1 3344553 2344677888889
Q ss_pred eeeeeeccc
Q 008067 169 LWIDFVNLR 177 (579)
Q Consensus 169 ~~iD~~~~R 177 (579)
+.+|++-.+
T Consensus 164 i~vDL~f~~ 172 (514)
T 1q79_A 164 IEIDILFAR 172 (514)
T ss_dssp EEEEEEEEE
T ss_pred eeEEEEEec
Confidence 999987655
No 22
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=69.04 E-value=5.8 Score=40.32 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=34.3
Q ss_pred CcccHHH-HHHHhhhhcccCccccc----CCCC----------cccchHHH-HHHHcCCCcccHHHHHHHHHHH
Q 008067 359 NDDQRRL-SQYAALFLPFRNTTYKD----NKGK----------KIPVVNYT-FRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 359 ~~e~~~l-l~LAaLlhdigK~~~~~----~~gk----------~h~~~~~~-i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
+.+.... +.+|||||||||....+ +.++ .|+..|+. +++..+++ +.+..++.+|
T Consensus 188 ~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G~~~ll~~~~~~----~~v~~~i~~H 257 (328)
T 3tm8_A 188 TDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQDKKHFD----QTVINIIGQH 257 (328)
T ss_dssp CCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHHHHHHTTCTTSC----HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCc----HHHHHHHHHh
Confidence 3334455 88999999999985432 1111 27777876 77777765 4555555554
No 23
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=67.63 E-value=8.7 Score=39.89 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHHHHhhhhcccCcccc---c---CCCCcccchHHHHHH---------HcCCCcccHHHHHHHHHH
Q 008067 364 RLSQYAALFLPFRNTTYK---D---NKGKKIPVVNYTFRD---------SLKRKASDAETVMNIHRV 415 (579)
Q Consensus 364 ~ll~LAaLlhdigK~~~~---~---~~gk~h~~~~~~i~~---------rLkl~~~d~~~V~~Lv~~ 415 (579)
..+.+||||||+|++... + ..|..|..+|+.+.+ .. ++.++++.|+.++.+
T Consensus 75 ~~~~~AaLLHDiG~~pfsh~~e~~~~~g~~He~~g~~i~~~~~i~~iL~~~-~~~~~i~~I~~~I~~ 140 (371)
T 2hek_A 75 ELVKLAGLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQD-YSHEDIERLVRITLG 140 (371)
T ss_dssp HHHHHHHHTTTTTCCSSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTT-SCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCccccccchHHHhccCCCHHHHHHHHHhcchHHHHHHHh-CCHHHHHHHHHHHhc
Confidence 567899999999998631 1 136778888875432 23 666777778888876
No 24
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=66.67 E-value=28 Score=35.55 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEechh-hHhhhhCCCCCCeEEEEcC
Q 008067 73 TDTETKIFSCLLNTLRHFNLETVLRVAGGW-VRDKLLGKDCYDIDIALDN 121 (579)
Q Consensus 73 ~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~-VRD~LLg~~~~DiDi~~~~ 121 (579)
+..-+.+++.|.++++....+.++++.|-+ |..+ +.+..|||+++..
T Consensus 46 ~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl--~lp~SDIDl~v~~ 93 (353)
T 2ikf_A 46 TRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGV--HEKGSDVDFVVLN 93 (353)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSS--CCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCC--CCCCcceeEEEee
Confidence 444567788888888888888999999999 5654 5678999999853
No 25
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=62.86 E-value=3.2 Score=41.73 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=35.4
Q ss_pred cHHHHHHHhhhhcccCcccc---------------cCC-----------CCcccchHHHHHHHcCCCcccHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYK---------------DNK-----------GKKIPVVNYTFRDSLKRKASDAETVMNIHRV 415 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~---------------~~~-----------gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~ 415 (579)
....+++|++||||||.... .+. |..|+.+|+.+++..+++ +.+...+++
T Consensus 141 ~~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~~~~~~H~~iG~~ll~~w~lp----~~i~~~I~~ 216 (305)
T 3hc1_A 141 NPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHCEVGFALAKRWSLN----EFICDTILY 216 (305)
T ss_dssp CHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHHSSCHHHHHHHHHHHTTCC----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHCCCHHHHHHHHHHHcCCC----HHHHHHHHH
Confidence 34668999999999996531 111 236888999888999988 445555555
Q ss_pred H
Q 008067 416 L 416 (579)
Q Consensus 416 h 416 (579)
|
T Consensus 217 H 217 (305)
T 3hc1_A 217 H 217 (305)
T ss_dssp T
T ss_pred h
Confidence 4
No 26
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=60.73 E-value=38 Score=36.77 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=50.8
Q ss_pred CCeEEEechhhHhhhhCCCCCCeEEEEcCC---ChHHHHHHHHHHHHhcCCccCCceEEecCCCCCCcceEEEEEEecCe
Q 008067 93 ETVLRVAGGWVRDKLLGKDCYDIDIALDNM---MGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDL 169 (579)
Q Consensus 93 ~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~---~~~~f~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~t~~~~~~~~ 169 (579)
+.+++++|-+.-... .+..|||+++-+. +..+|...+.+.+++... . ..+.+|. ....-+.+++..|.
T Consensus 81 ~~~V~~FGSy~lG~~--~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~-v-~~v~~I~-----~A~VPIIK~~~~gi 151 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVH--GPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKE-L-DEIAPVP-----DAFVPIIKIKFSGI 151 (530)
T ss_dssp BCEEEEEHHHHHTCC--CTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTT-E-EEEEEET-----TSSSCEEEEEETTE
T ss_pred CceEEEecccccCCC--CCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCC-C-ceEEEec-----CCcccEEEEEECCE
Confidence 578999988875544 5679999987654 234666667777765321 1 3344552 23446778888899
Q ss_pred eeeeecccc
Q 008067 170 WIDFVNLRC 178 (579)
Q Consensus 170 ~iD~~~~R~ 178 (579)
.+|++-.+.
T Consensus 152 ~vDL~f~~~ 160 (530)
T 2hhp_A 152 SIDLICARL 160 (530)
T ss_dssp EEEEEEEEC
T ss_pred eeEEEEecc
Confidence 999887664
No 27
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=60.00 E-value=52 Score=35.10 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=40.0
Q ss_pred ecccceecChhHHHHHHHHHHHH----HhcCCCCeEEEechhhHhhhhCCCCCCeEEEEc
Q 008067 65 QVRDKIELTDTETKIFSCLLNTL----RHFNLETVLRVAGGWVRDKLLGKDCYDIDIALD 120 (579)
Q Consensus 65 ~~~~~i~l~~~e~~~~~~l~~~~----~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~ 120 (579)
.+-..+.+|++|..+...+.+.+ +..-.+.++++.|-++-. +|.+..|+|+++.
T Consensus 140 ~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tG--L~lp~SDIDlvl~ 197 (464)
T 3pq1_A 140 TLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNT--FGKLGCDLDMFLD 197 (464)
T ss_dssp HHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSS--CCBTTCCEEEEEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccC--CCCCCCCeEEEEe
Confidence 34457789999988777555544 444457899999999855 4678999999874
No 28
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=56.33 E-value=5.5 Score=37.79 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=37.6
Q ss_pred ccH--HHHHHHhhhhcccCcccccCCCCcccchHHHHH--HHcCCCcccHHHHHHHHHHHHH
Q 008067 361 DQR--RLSQYAALFLPFRNTTYKDNKGKKIPVVNYTFR--DSLKRKASDAETVMNIHRVLEK 418 (579)
Q Consensus 361 e~~--~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i~--~rLkl~~~d~~~V~~Lv~~h~~ 418 (579)
+.+ .++.+||+|||||...-.+ ..|.-..++|. +-.||+.++...++.+++.|..
T Consensus 47 ~~~~~~lL~~Aa~LHdIG~~I~~~---~~hkHs~Yii~n~~l~Gfs~~e~~~lA~lv~~hr~ 105 (209)
T 3rf0_A 47 QPQLEALLKWAAMLHEVGLSINHS---GMHRHSAYILQNTNLPGFNQEQQTLLATLVRMHRK 105 (209)
T ss_dssp CHHHHHHHHHHHHHTTGGGGTCST---THHHHHHHHHHHSCCTTCCHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHHHHHHHHHHcccccCcc---cchHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 345 7889999999999875321 11211223443 3478999999999999998743
No 29
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=55.62 E-value=18 Score=30.57 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=32.1
Q ss_pred eecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCC
Q 008067 70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122 (579)
Q Consensus 70 i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~ 122 (579)
+.+++++. +.+.+.+++......+|+-|-++|.- ..+-.||||++...
T Consensus 7 ~~l~~~~~---~~i~~~l~~~~~v~~v~LFGS~ArG~--~~~~SDIDl~V~~~ 54 (114)
T 1no5_A 7 LDIKSEEL---AIVKTILQQLVPDYTVWAFGSRVKGK--AKKYSDLDLAIISE 54 (114)
T ss_dssp CCSCHHHH---HHHHHHHHHHCTTSEEEEEGGGTTTC--CCTTCCEEEEEECS
T ss_pred cCCCHHHH---HHHHHHHHHhCCCCEEEEEeccCCCC--CCCCCCeEEEEEeC
Confidence 34555443 34566666553346899999999964 24568999988654
No 30
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=50.96 E-value=40 Score=34.08 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=38.3
Q ss_pred ccceecChhHHHHHH----HHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcC
Q 008067 67 RDKIELTDTETKIFS----CLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (579)
Q Consensus 67 ~~~i~l~~~e~~~~~----~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~ 121 (579)
-..|..|++|..... .|.++++..-.+.++++.|-++... +.+..|||+++..
T Consensus 24 ~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~--~~~~SDiDl~v~~ 80 (349)
T 4fh3_A 24 YNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGL--ALKNSDMDLCVLM 80 (349)
T ss_dssp HHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTC--CBSSCCEEEEEEC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCC--CCCCCCEEEEEec
Confidence 456778888877655 4445555555678999999998754 4577899998854
No 31
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=46.82 E-value=31 Score=35.83 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=44.1
Q ss_pred ceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCC-CCCCeEEEEcCCChHH-----HHHHHHHHHHhcC
Q 008067 69 KIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK-DCYDIDIALDNMMGSE-----FATKVAEYLSATG 139 (579)
Q Consensus 69 ~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~-~~~DiDi~~~~~~~~~-----f~~~~~~~~~~~g 139 (579)
+|.+.+.+ .+.+.|++.++....+..+-++||.=| |+ .++|+||.+....+.. +...+.+.|...|
T Consensus 173 ripr~ea~-~ia~~i~~~l~~~~~~~~v~i~GSyRR----gket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~ 244 (381)
T 1jms_A 173 CVNRPEAE-AVSMLVKEAVVTFLPDALVTMTGGFRR----GKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQG 244 (381)
T ss_dssp CBCHHHHH-HHHHHHHHHHHHHCTTCEEEECHHHHT----TCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CEEHHHHH-HHHHHHHHHHHhcCCCcEEEEcccccc----CCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhCC
Confidence 44455444 566778888888777788888888766 55 4799999997654431 3335566665543
No 32
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=46.54 E-value=28 Score=28.31 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHHHHHHh-cCCCCeEEEechhhHhhhhCCCC-CCeEEEEcC
Q 008067 80 FSCLLNTLRH-FNLETVLRVAGGWVRDKLLGKDC-YDIDIALDN 121 (579)
Q Consensus 80 ~~~l~~~~~~-~~~~~~~~lVGG~VRD~LLg~~~-~DiDi~~~~ 121 (579)
.+.+.+.+++ ++ ...+|+-|-+.|.-. .+- .||||++-.
T Consensus 4 l~~i~~~l~~~~~-~~~v~LFGS~ArG~~--~~~~SDiDllV~~ 44 (96)
T 1ylq_A 4 MKEIKEITKKDVQ-DAEIYLYGSVVEGDY--SIGLSDIDVAIVS 44 (96)
T ss_dssp HHHHHHHHHHHCT-TCEEEEESHHHHCCS--SSCCCSEEEEEEC
T ss_pred HHHHHHHHHHHcC-CcEEEEEEEEEeCCC--CCCCCceEEEEEe
Confidence 3445566655 44 378999999999752 355 799998754
No 33
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=41.18 E-value=39 Score=34.40 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=43.5
Q ss_pred ccceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCC-CCCeEEEEcCCChH---HHHHHHHHHHHhcC
Q 008067 67 RDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMGS---EFATKVAEYLSATG 139 (579)
Q Consensus 67 ~~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~-~~DiDi~~~~~~~~---~f~~~~~~~~~~~g 139 (579)
..+|.+.+.+ .+.+.|++.++....+..+-++|+.=| |++ ++|+||.+....+. .+...+.+.|...+
T Consensus 144 ~~ripr~ea~-~ia~~i~~~l~~~~~~~~v~i~GS~RR----gket~gDiDilit~~~~~~~~~ll~~v~~~l~~~~ 215 (335)
T 2bcq_A 144 LERMPREEAT-EIEQTVQKAAQAFNSGLLCVACGSYRR----GKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEG 215 (335)
T ss_dssp GCCEEHHHHH-HHHHHHHHHHHTTCTTCEEEECHHHHT----TCSEESSEEEEEECTTSSTTTTCHHHHHHHHHHTT
T ss_pred cCCEEHHHHH-HHHHHHHHHHHhcCCCcEEEEcccccc----CCCCCCCeEEEEecCCchhhhhHHHHHHHHHHhCC
Confidence 3455565555 567788888888776778777777655 544 79999999765432 11124455555543
No 34
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=40.33 E-value=5.7 Score=39.28 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=34.7
Q ss_pred ccHHHHHHHhhhhcccCcccc-------c--C--------CCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 361 DQRRLSQYAALFLPFRNTTYK-------D--N--------KGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 361 e~~~ll~LAaLlhdigK~~~~-------~--~--------~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
.....+++|+||||+||.... + . -++.|+.+|+.+++..+++. .+...+++|
T Consensus 145 ~~~~~~~laGLLHdiGkl~l~~~~~~~~~~l~~~~~~~~~~~~~H~~iGa~ll~~w~lp~----~i~~ai~~H 213 (281)
T 3i7a_A 145 LNYDTLTLAGLVHNIGALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIGRAVLKSWDFAP----EVMEVVERW 213 (281)
T ss_dssp CCHHHHHHHHHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTCCH----HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCHHHHHHhHHhhHHHhcChHHHHHHHhCcHHHHHHHHHHHCCCCH----HHHHHHHHH
Confidence 345668999999999996320 0 0 12347888888888899974 444455554
No 35
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=40.16 E-value=29 Score=28.38 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcC
Q 008067 78 KIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDN 121 (579)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~ 121 (579)
.+.+.+..+++++| -..+|+-|-.+|.- -.+-.||||++..
T Consensus 11 ~l~~~i~~l~~~~~-v~~v~LFGS~arG~--~~~~SDiDl~V~~ 51 (98)
T 1wot_A 11 ARREAVLSLCARHG-AVRVRVFGSVARGE--AREDSDLDLLVAF 51 (98)
T ss_dssp HHHHHHHHHHHHHT-CSSCEECSHHHHTC--CCTTCCCEEEECC
T ss_pred HHHHHHHHHHHHcC-CcEEEEEccccCCC--CCCCCCEEEEEEe
Confidence 44555666666666 35799999999974 2456899999854
No 36
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=39.44 E-value=7.6 Score=38.64 Aligned_cols=51 Identities=8% Similarity=-0.045 Sum_probs=34.7
Q ss_pred cHHHHHHHhhhhcccCcccc-------------c--------------CCCCcccchHHHHHHHcCCCcccHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYK-------------D--------------NKGKKIPVVNYTFRDSLKRKASDAETVMNIHR 414 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~-------------~--------------~~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~ 414 (579)
....+++|+|||||||.... . .-|..|+.+|+.+++..+++. .++..++
T Consensus 147 ~~e~a~~aGLLHDIGkl~l~~~~p~~~~~~~il~~~~~~~~l~~~E~~~~g~~H~~iGa~ll~~w~lp~----~i~~aI~ 222 (297)
T 1vqr_A 147 LSHLLVPCAMLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDD----VLIESIC 222 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHTSSCHHHHHHHHHHHTTCCH----HHHHHHH
T ss_pred CHHHHHHHHHHHHccHHHHHHHChhhhhHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCH----HHHHHHH
Confidence 44568899999999997520 0 014568888888888888875 3444445
Q ss_pred HH
Q 008067 415 VL 416 (579)
Q Consensus 415 ~h 416 (579)
+|
T Consensus 223 ~H 224 (297)
T 1vqr_A 223 FV 224 (297)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 37
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=39.35 E-value=41 Score=34.61 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=43.9
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCC-CCCCeEEEEcCCChH---HHHHHHHHHHHhcC
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK-DCYDIDIALDNMMGS---EFATKVAEYLSATG 139 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~-~~~DiDi~~~~~~~~---~f~~~~~~~~~~~g 139 (579)
.+|.+.+.+ .+.+.|++.++....+..+-++||.=| |+ .++|+||.+....+. .+...+.+.|...|
T Consensus 152 ~ripr~ea~-~i~~~i~~~l~~~~~~~~v~i~GSyRR----gket~gDvDilit~~~~~~~~~ll~~v~~~L~~~~ 222 (360)
T 2ihm_A 152 TPVRRADAE-ALQQLIEAAVRQTLPGATVTLTGGFRR----GKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQG 222 (360)
T ss_dssp SCEEHHHHH-HHHHHHHHHHHTTCTTCEEEECHHHHT----TCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHTT
T ss_pred CCEEHHHHH-HHHHHHHHHHHhcCCCcEEEEcccccc----CCCccCCeEEEEecCChhhhhhHHHHHHHHHHhCC
Confidence 345555555 566778888888777788888888766 55 479999998765432 12234555565543
No 38
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=37.80 E-value=10 Score=41.02 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhcccCcccccCCCCcccchHHHH--HHHcCCCcccHHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYKDNKGKKIPVVNYTF--RDSLKRKASDAETVMNIHRVLE 417 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~~~~gk~h~~~~~~i--~~rLkl~~~d~~~V~~Lv~~h~ 417 (579)
+.++.+||+|||+|+..-.. ..|.-..++| .+-.||+.++...++.++++|.
T Consensus 360 ~~lL~~Aa~LhdiG~~I~~~---~~~~Hs~yii~n~~l~G~s~~e~~~lA~l~~~h~ 413 (513)
T 1u6z_A 360 EALLRWAAMLHEVGLNINHS---GLHRHSAYILQNSDLPGFNQEQQLMMATLVRYHR 413 (513)
T ss_dssp HHHHHHHHHHTTTTTTTCST---THHHHHHHHHHHSCCTTCCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcCCcc---ccchhHHHHHhcCCCCCCCHHHHHHHHHHHHHhC
Confidence 47889999999999865321 1111123455 4557999999999999999764
No 39
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=35.94 E-value=54 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCeEEEechhhHhhhhCCCCCCeEEEEcCC
Q 008067 81 SCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122 (579)
Q Consensus 81 ~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~~~DiDi~~~~~ 122 (579)
+.+..++++++.-..+|+-|-++|.- ..+-.||||++...
T Consensus 21 ~~~~~l~~~~~~v~~v~LFGS~ArG~--~~~~SDIDl~V~~~ 60 (111)
T 2rff_A 21 EIVEEVASSFPNLEEVYIFGSRARGD--YLDTSDIDILFVFK 60 (111)
T ss_dssp HHHHHHHHHCTTEEEEEEESHHHHSC--CCTTCCEEEEEEES
T ss_pred HHHHHHHHHcCCccEEEEEeeeecCC--CCCCCCEEEEEEec
Confidence 34444445553235799999999964 24568999988643
No 40
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=34.79 E-value=54 Score=33.32 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=44.2
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCCC-CCCeEEEEcCCCh---H----HHHHHHHHHHHhcC
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKD-CYDIDIALDNMMG---S----EFATKVAEYLSATG 139 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~~-~~DiDi~~~~~~~---~----~f~~~~~~~~~~~g 139 (579)
.+|.+.+.+ .+.+.|++.++....+..+-++|+.=| |++ ++|+||.+....+ . .+...+.+.|...+
T Consensus 148 ~ripr~ea~-~ia~~i~~~l~~~~~~~~v~i~GS~RR----gket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~ 222 (335)
T 2fmp_A 148 KRIPREEML-QMQDIVLNEVKKVDSEYIATVCGSFRR----GAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVH 222 (335)
T ss_dssp SCEEHHHHH-HHHHHHHHHHHHHCTTCEEEECHHHHT----TCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTT
T ss_pred CcEEHHHHH-HHHHHHHHHHHhcCCCcEEEecccccc----ccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCC
Confidence 455555555 566778888888777788888887655 554 7999999875410 1 23455666666544
No 41
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.05 E-value=40 Score=35.34 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=23.5
Q ss_pred cHHHHHHHhhhhcccCcccc---c---CCCCcccchHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYK---D---NKGKKIPVVNYTFRD 397 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~---~---~~gk~h~~~~~~i~~ 397 (579)
...++..|||+||+|++.+. + ..|..|...+..+.+
T Consensus 85 d~~~~~~AaLlHDiGh~PfsH~~E~~~~~~~~He~~s~~ii~ 126 (410)
T 2q14_A 85 EAEAVQAAILLHDIGHGPFSHVLEDTIVQGVSHEEISLMLME 126 (410)
T ss_dssp HHHHHHHHHHHTTTTCCTTHHHHHTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCccccccHHhhcCCCCHHHHHHHHHH
Confidence 34667889999999998752 1 124556666654444
No 42
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=33.69 E-value=9.5 Score=30.18 Aligned_cols=21 Identities=19% Similarity=0.800 Sum_probs=17.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHh
Q 008067 552 WQLAHPSGTAEECIDWMKETH 572 (579)
Q Consensus 552 wQL~~P~~t~ee~l~~lk~~~ 572 (579)
|...+..+++++|++||.+.+
T Consensus 39 W~~v~~~~sr~~CL~yIe~~W 59 (74)
T 2khr_A 39 WRVVHGEASRAACLDYVEKNW 59 (74)
T ss_dssp EEEEECSCCHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHhhh
Confidence 666778899999999998865
No 43
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=33.12 E-value=18 Score=35.63 Aligned_cols=17 Identities=0% Similarity=-0.134 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhcccCcc
Q 008067 363 RRLSQYAALFLPFRNTT 379 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~ 379 (579)
+.++.+.+.+|||||..
T Consensus 64 ~~~~~~~~~lHDiGK~~ 80 (265)
T 3sk9_A 64 LAWAAALVGLHDLGKAS 80 (265)
T ss_dssp HHHHHHHHTTTTGGGCS
T ss_pred HHHHHHHHHHhhccccc
Confidence 44566667799999973
No 44
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=32.52 E-value=23 Score=37.98 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.4
Q ss_pred cHHHHHHHhhhhcccCccc
Q 008067 362 QRRLSQYAALFLPFRNTTY 380 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~ 380 (579)
...++..|||+||||.+.+
T Consensus 123 ~~~~v~~AaLlHDIGH~PF 141 (480)
T 3irh_A 123 ERLITLCAALLHDVGHGPY 141 (480)
T ss_dssp GHHHHHHHHHHTTTTCCTT
T ss_pred HHHHHHHHHHHhccCCCCc
Confidence 3456788999999999865
No 45
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=29.58 E-value=18 Score=35.84 Aligned_cols=51 Identities=2% Similarity=-0.074 Sum_probs=35.3
Q ss_pred cHHHHHHHhhhhcccCcccc-----------cC-------------CCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYK-----------DN-------------KGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~-----------~~-------------~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
....+++|+||||+||.... .. -|..|+.+|+.+++..++|. .+...+++|
T Consensus 131 ~~~~~~~agLLhdiGkl~l~~~~p~~~~~il~~~~~~~l~~~E~~~lg~~H~~vGa~ll~~W~lp~----~i~~aI~~H 205 (288)
T 3ljx_A 131 APKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERFATDHDELTRMLLTDWGFPQ----VFIDALQLS 205 (288)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSSCHHHHHHHHHHHTTCCH----HHHHHHHHT
T ss_pred CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHccCHHHHHHHHHHHCCCCH----HHHHHHHHH
Confidence 35668999999999996320 00 14568888998888999984 455555554
No 46
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=27.31 E-value=47 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=24.9
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhC
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLG 109 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg 109 (579)
-+|.||++|... |.+.++..|.. +.-++|..+||
T Consensus 18 i~vRlt~eE~~~---l~~~A~~~g~s-----~SeyiR~~~l~ 51 (51)
T 2ba3_A 18 RTLRFSPVEDET---IRKKAEDSGLT-----VSAYIRNAALN 51 (51)
T ss_dssp EEEEECHHHHHH---HHHHHHHHTCC-----HHHHHHHHHHC
T ss_pred EEEEECHHHHHH---HHHHHHHhCCC-----HHHHHHHHHcC
Confidence 467899999886 45566666632 57888888876
No 47
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=26.51 E-value=64 Score=29.48 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhhhh
Q 008067 539 GPLVREWQQKLLAWQLA-HPSGTAEECIDWMKETHLKRI 576 (579)
Q Consensus 539 GP~vg~~l~~llewQL~-~P~~t~ee~l~~lk~~~~~~~ 576 (579)
|=.+..+.+-+++-|-. +|+.|.++|++-+.....||+
T Consensus 24 GVtl~dia~~~~~Lq~~y~p~l~~e~~~e~v~~vL~Kre 62 (168)
T 1rfz_A 24 GVTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISKRE 62 (168)
T ss_dssp TCCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHhcCccCCCcCHHHHHHHHHHHHCCHH
Confidence 66699999999999999 999999999999999999886
No 48
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=24.95 E-value=16 Score=35.80 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhcccCcccc--------------cC-----------CCCcccchHHHHHHHcCCCcccHHHHHHHHHHH
Q 008067 363 RRLSQYAALFLPFRNTTYK--------------DN-----------KGKKIPVVNYTFRDSLKRKASDAETVMNIHRVL 416 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~~--------------~~-----------~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~~h 416 (579)
...+++|+||||+||.... +. -|..|+.+|+.+++..++|. .+...+++|
T Consensus 128 ~~~~~~agLLhdiGkl~l~~~~p~~~~~i~~~~~~~~~~~~~E~~~lg~~H~~vGa~ll~~W~lp~----~i~~aI~~H 202 (275)
T 3m1t_A 128 PEEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELLGYDNAEIGALLAQSWKFTP----HLVKGIQFQ 202 (275)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHHHHSSCHHHHHHHHHHHTTCCH----HHHHHHHTT
T ss_pred HHHHHHHHHHHHccHHHHHHHCHHHHHHHHHHHhCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCH----HHHHHHHHh
Confidence 4567899999999986420 00 02357888888888889874 444445544
No 49
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=24.67 E-value=8.8 Score=30.39 Aligned_cols=21 Identities=29% Similarity=0.801 Sum_probs=16.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHh
Q 008067 552 WQLAHPSGTAEECIDWMKETH 572 (579)
Q Consensus 552 wQL~~P~~t~ee~l~~lk~~~ 572 (579)
|...+..+++++|++||.+.+
T Consensus 37 W~~v~~~~sr~~CL~yIe~~W 57 (74)
T 2pst_X 37 WRAAGKSGLKKDCLAYIEEVW 57 (74)
T ss_dssp EEEEEEEECHHHHHHHHHHHC
T ss_pred cccCCCCCCHHHHHHHHHHHc
Confidence 556677789999999998764
No 50
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=24.18 E-value=75 Score=29.29 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=34.4
Q ss_pred CchHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhhhh
Q 008067 539 GPLVREWQQKLLAWQLA-HPSGTAEECIDWMKETHLKRI 576 (579)
Q Consensus 539 GP~vg~~l~~llewQL~-~P~~t~ee~l~~lk~~~~~~~ 576 (579)
|=.+..+.+-+++-|-. +|+.|.++|++-++....||+
T Consensus 22 GVtl~diae~v~~Lq~~y~p~l~~e~~~e~v~~vL~Kre 60 (178)
T 1y9i_A 22 GVEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRKRE 60 (178)
T ss_dssp TCCHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHhcCccCCCcCHHHHHHHHHHHhCCHH
Confidence 55599999999999999 999999999999999999886
No 51
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=24.02 E-value=87 Score=34.15 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=66.0
Q ss_pred cceecChhHHHHHHHHHHHHHhcCCCCeEEEechhhHhhhhCC-CCCCeEEEEcCCChHHHHHHHHHHHHhcCCccCCce
Q 008067 68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK-DCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGF 146 (579)
Q Consensus 68 ~~i~l~~~e~~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~-~~~DiDi~~~~~~~~~f~~~~~~~~~~~g~~~~~~~ 146 (579)
.+|.+.+.+ .+.+.|.+.++.......+-++|+.=| |+ .++|+||.+....+ +.+.+.|.+.+.- .
T Consensus 156 ~r~~~~e~~-~~~~~i~~~l~~~~~~~~~~~~Gs~RR----gke~~gDiD~li~~~~~----~~v~~~l~~~~~~----~ 222 (575)
T 3b0x_A 156 KRRPLGAVL-SLARSLLEAIRALPGVERAELCGSARR----YKDTVGDLDFLVASREG----ERAVEGFVRLPQV----K 222 (575)
T ss_dssp CCEEHHHHH-HHHHHHHHHHHTSTTCCEEEECHHHHT----TCSEESSEEEEEECSSH----HHHHHHHHTSTTE----E
T ss_pred cceeHHHHH-HHHHHHHHHHHhCCCCcEEEEcccccc----CCCccCCeEEEEeCCCH----HHHHHHHHhCcch----h
Confidence 345555444 456677788887765666667776654 55 47999999987654 3455556554321 1
Q ss_pred EEecCCCCCCcceEEEEEEe-cCeeeeeecccccccC------CCCCCcccccC-CHHHHHhcCCCCccce
Q 008067 147 GVIPSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYS------ENSRIPTMRFG-TAEEDAYRRDLTINSL 209 (579)
Q Consensus 147 ~~i~~~~~~~~~~~t~~~~~-~~~~iD~~~~R~e~y~------~~~r~p~v~~~-t~~eDl~RRDfTINAl 209 (579)
.++...+ .+ +++++ .|..|||.-.-.+.|. ..|. .|. .+..=+..|.+++|.-
T Consensus 223 ~~~~~g~--~k----~~~~~~~~~rvDl~~~~~~~~~~al~~~TGs~----~~n~~lR~~A~~~g~~l~~~ 283 (575)
T 3b0x_A 223 EVYAKGK--ER----ATVFLKNGLQVDLRVVPPESYGAGLQYLTGSA----AHSIRLRALAQEKGLKLSEY 283 (575)
T ss_dssp EEEEECS--SE----EEEEETTSCEEEEEEECGGGHHHHHHHHHCCH----HHHHHHHHHHHHTTCEEETT
T ss_pred hHhhcCC--Cc----eEEEccCCcEEEEEEECHHHHHHHHHHhhCCH----HHHHHHHHHHHHcCCCcchh
Confidence 1232211 11 33343 4678887765544431 1111 011 3555566778888754
No 52
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=21.83 E-value=1.6e+02 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEechh-hHhhhhCCCCCCeEEEEcCCChHHH
Q 008067 75 TETKIFSCLLNTLRHFNLETVLRVAGGW-VRDKLLGKDCYDIDIALDNMMGSEF 127 (579)
Q Consensus 75 ~e~~~~~~l~~~~~~~~~~~~~~lVGG~-VRD~LLg~~~~DiDi~~~~~~~~~f 127 (579)
.|+.+++.|+++++.-. ..++-+.||. ++.-.-.-.-.|+||++-......|
T Consensus 5 ~e~em~~~i~~~a~~d~-rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~~~ 57 (294)
T 2pbe_A 5 SEQEMMDIFLDFALNDE-RIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESF 57 (294)
T ss_dssp CHHHHHHHHHHHHHHCT-TEEEEEEC------------CCCEEEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHcCCc-CEEEEEEecCCCCCCCCCCCcccceEEEEEcCchHh
Confidence 36678899999988753 3555555554 4433334456799997755444444
No 53
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=21.76 E-value=1.1e+02 Score=31.69 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhcccCccc
Q 008067 363 RRLSQYAALFLPFRNTTY 380 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~ 380 (579)
..++..|+|+||||++.+
T Consensus 98 ~~l~~~a~LlHDiGh~PF 115 (376)
T 2dqb_A 98 EDLTEAIALSHDLGHPPF 115 (376)
T ss_dssp HHHHHHHHHHTTTTCCSS
T ss_pred HHHHHHHHHHHhcCCCcc
Confidence 356788999999999853
No 54
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=21.07 E-value=42 Score=35.58 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=33.9
Q ss_pred cHHHHHHHhhhhcccCcccc---------------cC------------CCCcccchHHHHHHHcCCCcccHHHHHHHHH
Q 008067 362 QRRLSQYAALFLPFRNTTYK---------------DN------------KGKKIPVVNYTFRDSLKRKASDAETVMNIHR 414 (579)
Q Consensus 362 ~~~ll~LAaLlhdigK~~~~---------------~~------------~gk~h~~~~~~i~~rLkl~~~d~~~V~~Lv~ 414 (579)
.....++|+|||||||.... .. -|..|+.+|+.+++..++|. .++..++
T Consensus 304 ~~~~aflaGLLhDIGkl~l~~~~p~~~~~i~~~~~~~~~~~~~~~E~~~lg~~H~~vGa~Ll~~W~lP~----~i~~aI~ 379 (457)
T 3mem_A 304 LFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIEHYLLGITREQIAAQLMENWGMPD----EVTLAIR 379 (457)
T ss_dssp CHHHHHHHHHHTTTHHHHHHHHSHHHHHHHHHHHHHCTTSCHHHHHHHHHSSCHHHHHHHHHHHTTCCH----HHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHCHHHHHHHHHHHHhcCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCH----HHHHHHH
Confidence 34568999999999986420 00 13457778888888888885 4444445
Q ss_pred HH
Q 008067 415 VL 416 (579)
Q Consensus 415 ~h 416 (579)
+|
T Consensus 380 ~H 381 (457)
T 3mem_A 380 YQ 381 (457)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 55
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=20.90 E-value=1.2e+02 Score=32.20 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEechhhHhhhhCC--CCCCeEEEEcCC
Q 008067 78 KIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGK--DCYDIDIALDNM 122 (579)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~lVGG~VRD~LLg~--~~~DiDi~~~~~ 122 (579)
.+...|..++++.-.+..+++.|.+|+ .|. +..|||+++...
T Consensus 43 ~a~~~l~~~v~~~~p~a~v~~FGS~v~---~Gl~lp~SDiDl~~~~~ 86 (468)
T 2b4v_A 43 RAQQQLQGLADKWTPDAKVYCCGSMVT---YGQMERGSDLDLACMFD 86 (468)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEETHHHH---HSSCBTTCCEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeCchh---cCCCCCCCceeEEEecC
Confidence 345567777777778899999999995 454 689999998753
No 56
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=20.20 E-value=39 Score=32.88 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhcccCccc
Q 008067 363 RRLSQYAALFLPFRNTTY 380 (579)
Q Consensus 363 ~~ll~LAaLlhdigK~~~ 380 (579)
+.++.+|+++||+||...
T Consensus 56 ~~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 56 DEFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHHcccccCCH
Confidence 456678999999999854
Done!