BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008068
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/581 (66%), Positives = 477/581 (82%), Gaps = 9/581 (1%)
Query: 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-S 58
MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG TDPE +
Sbjct: 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66
Query: 59 FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118
FKS VPLVT +L+PYI+R++DGD SPILTG P+ IS SSGT+QG+PKF+PF DELME
Sbjct: 67 FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126
Query: 119 TLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177
TLQ+FRT++AFRNR+FPI GKALQFI+ SKQ + GG+ GTATTNVYR+ FKA MK
Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186
Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237
++ S CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE
Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246
Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297
+ DI++GVLS+RITVPS+R AMSK+L PNPELA+ I KC LSNWYGLIP LFPNAKY
Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306
Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357
+ GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY
Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366
Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHN 417
FEF+P S+ E KPVGLT+VK+GEEYE+++TN AGLYRYRLGDVVKV+GF+N
Sbjct: 367 FEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYN 420
Query: 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGH 477
+TP+LKFICRRNL+L+INIDKNTE+DLQLSV+ V+DF+S++D+STDPGH
Sbjct: 421 NTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480
Query: 478 YVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDH 537
Y IFWE+SGE N++VL++CCNCLDR+F+DAGYVS+RK IG LELRVV KGTF++I +H
Sbjct: 481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEH 540
Query: 538 YLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFSTAY 578
+LGLG++ QFK PRCV P+N VLQILC N+ SYFSTA+
Sbjct: 541 FLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/568 (39%), Positives = 345/568 (60%), Gaps = 12/568 (2%)
Query: 17 FETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQ 76
E +T++A+ +Q L +IL N EYL+ L G T E+FKS +P++ +EDLQP IQ
Sbjct: 26 IEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQ 85
Query: 77 RIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP- 135
RI +GD S IL+ PI+ SSGT+ G+ K +P E ++ ++ N P
Sbjct: 86 RIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPG 145
Query: 136 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDF 195
+ KGK L F++ +++T GGL A T+ Y+S FK + SP+E I D
Sbjct: 146 LDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADS 205
Query: 196 HQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPS 255
QS+Y +LCG+ R+++ + + FA L+ A R +L W +L DIR G LS +IT PS
Sbjct: 206 FQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPS 265
Query: 256 IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRH 315
+R ++ +LKP+PELADL+ +CS NW G+I ++PN KYL I+TG+M Y+ L +
Sbjct: 266 VRNCVAGVLKPDPELADLVAGECSK-DNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDY 324
Query: 316 YAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCI 375
Y+G LPL Y SSE + G N+NP P ++ ++PN+ YFEF+P ++
Sbjct: 325 YSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS- 383
Query: 376 EPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTIN 435
P+ V L V+VG+EYE+++T AGLYRYR+GD+++V GFHNS P+ F+ R+N+LL+I+
Sbjct: 384 PPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSID 443
Query: 436 IDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEV-----SGEVND 490
DK E +LQ +VD VV++TS D T PGHYVI+WE+ + +D
Sbjct: 444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSD 503
Query: 491 EVLKECCNCLDRSFVDAGYVSARKV-NAIGPLELRVVLKGTFQQILDHYLGLGAALSQFK 549
E+L +CC ++ S +++ Y R N+IGPLE+RVV GTF++++D+ + GA+++Q+K
Sbjct: 504 ELLGQCCLAMEES-LNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYK 562
Query: 550 TPRCVGPTNKTVLQILCNNIGKSYFSTA 577
PRCV T ++++L + + S+FS A
Sbjct: 563 VPRCVNFT--PIMELLDSRVVSSHFSPA 588
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/582 (37%), Positives = 338/582 (58%), Gaps = 28/582 (4%)
Query: 9 DVDELIE-EFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVT 67
D++E E + + +T + + IQ L +I+ N EYLQ L R D E FK VP+V+
Sbjct: 12 DINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVS 70
Query: 68 HEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSY 127
+ED++PY+ R+++G+ S +++ + IT SSGT+ G K +P+N++ ++ I+
Sbjct: 71 YEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRM 130
Query: 128 AFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSP 186
+ + +GK + F++ ++S T GL A AT++ ++S FK SP
Sbjct: 131 QVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSP 190
Query: 187 DEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGV 246
DEVI P+ +SLYCHLLCGL+ R+E+ S FA +V A + WEELC +IR G
Sbjct: 191 DEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGH 250
Query: 247 LSSRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
LS+ +T + ++S +L P PELAD I + C+ ++W G++ L+PN KY+ ++TGS
Sbjct: 251 LSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-NSWKGIVKRLWPNTKYIETVVTGS 309
Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
M Y+ L +Y DLPL+S YGSSE G N++P PE ++ +PN+ YFEFIP
Sbjct: 310 MGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDG 369
Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFI 425
G+ + V L +VK+G YE +VTN AGLYR R+GD+V V GF+N+ P+ KF+
Sbjct: 370 GD--------KNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFV 421
Query: 426 CRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVS 485
R N++L+I+ DK E+DL +V + DFTS+ D ST PGHYV++ EV
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 481
Query: 486 G-----------EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQ 533
E+++E L CC ++ S +D Y R K +IGPLE+RVV +GTF
Sbjct: 482 TKEGEEKETAQFELDEEALSTCCLVMEES-LDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 534 ILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 575
++D ++ GA+ Q+KTPRC+ + LQ+L + +FS
Sbjct: 541 LMDFFISQGASTGQYKTPRCI--KSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/582 (37%), Positives = 330/582 (56%), Gaps = 28/582 (4%)
Query: 9 DVDELIE-EFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVT 67
D++E E + + +T + + IQ L +I+ N EYLQ L R D E FK VP+V+
Sbjct: 12 DINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVS 70
Query: 68 HEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSY 127
+ED++PY+ R+++G+ S +++ + IT SSGT+ G K P+N++ ++ I+
Sbjct: 71 YEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRX 130
Query: 128 AFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSP 186
+ + +GK F++ ++S T GL A AT++ ++S FK SP
Sbjct: 131 QVITKHVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSP 190
Query: 187 DEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGV 246
DEVI P+ +SLYCHLLCGL+ R+E+ S FA V A + WEELC +IR G
Sbjct: 191 DEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGH 250
Query: 247 LSSRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
LS+ +T + ++S +L P PELAD I + C+ ++W G++ L+PN KY+ ++TGS
Sbjct: 251 LSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-NSWKGIVKRLWPNTKYIETVVTGS 309
Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
Y+ L +Y DLPL+S YGSSE G N++P PE ++ PN YFEFIP
Sbjct: 310 XGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDG 369
Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRLGDVVKVMGFHNSTPELKFI 425
G+ + V L +VK+G YE +VTN AGLYR R+GD+V V GF+N+ P+ KF+
Sbjct: 370 GD--------KNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFV 421
Query: 426 CRRNLLLTINIDKNTEKDLQLSVDXXXXXXXXXXXXVVDFTSHVDLSTDPGHYVIFWEVS 485
R N++L+I+ DK E+DL +V + DFTS+ D ST PGHYV++ EV
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 481
Query: 486 G-----------EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQ 533
E+++E L CC + S +D Y R K +IGPLE+RVV +GTF
Sbjct: 482 TKEGEEKETAQFELDEEALSTCCLVXEES-LDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 534 ILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNIGKSYFS 575
+ D ++ GA+ Q+KTPRC+ + LQ+L + +FS
Sbjct: 541 LXDFFISQGASTGQYKTPRCI--KSGKALQVLETCVVAKFFS 580
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 193 PDFHQSLYCHLLCGL---IFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSS 249
P + + H CG+ I RE + +T L + + + W E D + + +
Sbjct: 9 PQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPN 68
Query: 250 RITVPS-IRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNA--KYLSGIMTGSM 306
R T PS I+A LAD +H K GL ++ +A + S M GS+
Sbjct: 69 RQTFPSGIKA-----------LADYVHAK--------GLKLGIYSDAGSQTCSNKMPGSL 109
Query: 307 EHYLKKLRHYA 317
+H + ++ +A
Sbjct: 110 DHEEQDVKTFA 120
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 3 EKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSC 62
+K+E D+ + I E IT ++ + + E + YL++ G + T + K+C
Sbjct: 2052 KKLEWADIRKKIMEPNFITSIINYDTKKMMTPKIREAITKGYLEDPGFDYETVNRASKAC 2111
Query: 63 VPLVTHEDLQPYIQRIID 80
PLV Q Y I+D
Sbjct: 2112 GPLVKWATAQTYYSEILD 2129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,190,401
Number of Sequences: 62578
Number of extensions: 734451
Number of successful extensions: 1465
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 11
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)