Query 008068
Match_columns 579
No_of_seqs 173 out of 935
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 7E-131 2E-135 1087.0 52.0 570 1-578 7-581 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 1E-127 5E-132 1064.3 44.5 571 2-578 11-589 (609)
3 4eql_A 4-substituted benzoates 100.0 1E-126 4E-131 1055.6 40.8 560 1-575 7-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 3.5E-23 1.2E-27 222.9 25.0 377 23-532 18-420 (436)
5 2y27_A Phenylacetate-coenzyme 99.9 2.2E-22 7.4E-27 216.7 25.6 381 23-532 22-422 (437)
6 2y4o_A Phenylacetate-coenzyme 99.9 3.9E-22 1.3E-26 215.1 27.3 380 23-532 24-426 (443)
7 3e7w_A D-alanine--poly(phospho 99.6 1.6E-14 5.4E-19 158.5 24.8 135 289-451 256-420 (511)
8 3etc_A AMP-binding protein; ad 99.6 9.6E-15 3.3E-19 163.2 23.2 131 292-450 340-496 (580)
9 2d1s_A Luciferase, luciferin 4 99.6 2.7E-14 9.2E-19 158.3 24.3 133 292-450 308-462 (548)
10 3hgu_A EHPF; phenazine, antibi 99.6 2.6E-14 8.9E-19 150.1 22.4 319 26-436 21-367 (369)
11 3ni2_A 4-coumarate:COA ligase; 99.6 2.1E-14 7.2E-19 158.5 21.8 134 291-450 295-455 (536)
12 4fuq_A Malonyl COA synthetase; 99.6 3.8E-14 1.3E-18 155.3 22.6 134 290-450 265-420 (503)
13 3fce_A D-alanine--poly(phospho 99.6 2.3E-14 7.8E-19 157.2 20.5 134 290-451 258-421 (512)
14 3l8c_A D-alanine--poly(phospho 99.6 6.9E-15 2.3E-19 161.5 15.3 133 291-450 262-424 (521)
15 3kxw_A Saframycin MX1 syntheta 99.6 1.6E-14 5.3E-19 160.9 17.2 109 384-504 393-529 (590)
16 1mdb_A 2,3-dihydroxybenzoate-A 99.6 8.2E-14 2.8E-18 154.0 22.0 131 292-450 297-451 (539)
17 3g7s_A Long-chain-fatty-acid-- 99.6 2.8E-14 9.7E-19 158.0 18.3 134 291-450 294-460 (549)
18 2v7b_A Benzoate-coenzyme A lig 99.6 1.2E-13 3.9E-18 152.1 22.5 129 294-450 301-450 (529)
19 3ivr_A Putative long-chain-fat 99.6 1.6E-14 5.6E-19 158.2 14.7 133 292-451 271-422 (509)
20 3nyq_A Malonyl-COA ligase; A/B 99.5 2.4E-13 8.1E-18 149.2 21.6 179 293-504 272-474 (505)
21 1t5h_X 4-chlorobenzoyl COA lig 99.5 2.4E-13 8.1E-18 148.8 21.5 133 292-450 271-423 (504)
22 3c5e_A Acyl-coenzyme A synthet 99.5 3.9E-13 1.3E-17 149.7 23.6 131 292-450 321-477 (570)
23 3ite_A SIDN siderophore synthe 99.5 3E-14 1E-18 158.0 13.3 134 291-451 292-449 (562)
24 3gqw_A Fatty acid AMP ligase; 99.5 3.1E-13 1.1E-17 149.7 21.4 132 292-451 298-483 (576)
25 3rix_A Luciferase, luciferin 4 99.5 1.1E-13 3.6E-18 153.4 16.1 134 292-451 306-461 (550)
26 1pg4_A Acetyl-COA synthetase; 99.5 6.9E-13 2.4E-17 150.1 22.3 227 292-569 377-645 (652)
27 1amu_A GRSA, gramicidin synthe 99.5 2.4E-13 8.4E-18 151.2 18.2 132 292-450 292-451 (563)
28 3r44_A Fatty acyl COA syntheta 99.5 2.6E-13 9.1E-18 149.1 17.7 129 292-450 283-434 (517)
29 3o83_A Peptide arylation enzym 99.5 7.9E-14 2.7E-18 154.3 12.5 133 292-451 306-461 (544)
30 3rg2_A Enterobactin synthase c 99.5 1.3E-12 4.6E-17 146.7 22.2 133 291-450 300-455 (617)
31 1ry2_A Acetyl-coenzyme A synth 99.5 8.1E-13 2.8E-17 150.0 20.6 229 292-567 383-659 (663)
32 4gr5_A Non-ribosomal peptide s 99.5 5.2E-14 1.8E-18 156.6 10.2 133 292-451 325-491 (570)
33 3ipl_A 2-succinylbenzoate--COA 99.5 1.9E-12 6.4E-17 141.4 22.2 123 294-450 275-419 (501)
34 3tsy_A Fusion protein 4-coumar 99.4 1.4E-12 4.7E-17 154.2 17.5 134 292-451 343-503 (979)
35 4dg8_A PA1221; ANL superfamily 99.4 7.8E-13 2.7E-17 149.0 14.1 133 292-450 275-440 (620)
36 4gs5_A Acyl-COA synthetase (AM 99.4 1.6E-12 5.6E-17 136.5 15.1 124 292-453 147-274 (358)
37 2vsq_A Surfactin synthetase su 99.4 1.8E-11 6.1E-16 148.9 23.1 131 293-450 720-882 (1304)
38 1v25_A Long-chain-fatty-acid-C 99.4 3.5E-12 1.2E-16 141.0 14.9 131 292-451 292-457 (541)
39 3t5a_A Long-chain-fatty-acid-- 98.8 1.3E-08 4.4E-13 109.9 12.4 109 291-427 309-480 (480)
40 3lax_A Phenylacetate-coenzyme 97.6 0.00017 5.9E-09 61.9 8.2 90 427-532 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 97.4 0.00038 1.3E-08 59.9 8.0 90 426-532 1-93 (109)
42 2qmx_A Prephenate dehydratase; 23.2 3.1E+02 0.011 27.0 9.2 56 441-501 211-266 (283)
43 2fyx_A Transposase, putative; 20.2 4.1E+02 0.014 22.7 11.1 39 440-487 42-80 (143)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=6.7e-131 Score=1086.95 Aligned_cols=570 Identities=68% Similarity=1.177 Sum_probs=524.7
Q ss_pred CCccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChhhHhcCCCCC-CChh-hhhhcCCCcccccchHHHHHH
Q 008068 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQRI 78 (579)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i-~s~e-dF~~~vPl~~Yed~~p~ier~ 78 (579)
|+|||+.+++++.++.|++.|+||.++|+++|++||+.|++|+|||+|||++| +|++ ||+++|||++|||++||||||
T Consensus 7 ~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi 86 (581)
T 4epl_A 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRM 86 (581)
T ss_dssp ------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 9999 999999999999999999999
Q ss_pred hcCCCCCCccCCCcceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCC-CCceEEEeecccccccCCCC
Q 008068 79 IDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGL 157 (579)
Q Consensus 79 ~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p~~-~gk~l~~~~~~~~~~t~~Gi 157 (579)
++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|+.++++.+++. .||.|+|++++.+..|++|+
T Consensus 87 ~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~~t~~Gi 166 (581)
T 4epl_A 87 VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGV 166 (581)
T ss_dssp HTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCEECTTSC
T ss_pred HCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcccCCCCc
Confidence 99997899999999999999999999999999999999988777778888887733387 89999988899999999999
Q ss_pred eEeccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHH
Q 008068 158 NAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237 (579)
Q Consensus 158 ~~g~~S~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~~~f~~~ll~~~~~l~~~~~~ 237 (579)
|+|++|++++++.+|++.|.|+...|++|.+++.++|..+++||||||||.++++|.+|+++||++|+++++.++++|++
T Consensus 167 ~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~ 246 (581)
T 4epl_A 167 PVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246 (581)
T ss_dssp EEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHh
Q 008068 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYA 317 (579)
Q Consensus 238 l~~dI~~g~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~~~~~~~~l~~~~ 317 (579)
+|+||++|+++++++++++|+++++.|+|+|++|++|+++|++.++|+|++++|||||++|+||++|+|.+|++++++++
T Consensus 247 l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~ 326 (581)
T 4epl_A 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYA 326 (581)
T ss_dssp HHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHH
T ss_pred HHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999872248999999999999999999999999999999999
Q ss_pred CCCCeeccccccCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEcc
Q 008068 318 GDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN 397 (579)
Q Consensus 318 g~v~v~~~~YgaSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt 397 (579)
|++|+++.+|+||||++|+|+++.|+++..+|+++|+.+||||||.+ +.++ +++++++++||+.|++|||||||
T Consensus 327 g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~YelviTt 400 (581)
T 4epl_A 327 GDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVITN 400 (581)
T ss_dssp TTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEEES
T ss_pred CCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEEee
Confidence 89999999999999999999999998777789999999999999987 4433 35789999999999999999999
Q ss_pred ccceeccccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCce
Q 008068 398 VAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGH 477 (579)
Q Consensus 398 ~~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~ 477 (579)
.+||||||+||+|+|+|++|++|+|+|+||++++||++||||+|++|+.||.+|++.|.++|+.|.||++.+|.++.|||
T Consensus 401 ~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h 480 (581)
T 4epl_A 401 YAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480 (581)
T ss_dssp TTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE
T ss_pred ccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999998777789999999999988888999
Q ss_pred EEEEEEeccCCCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCccc--C
Q 008068 478 YVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV--G 555 (579)
Q Consensus 478 y~~~vE~~~~~~~~~l~~~~~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~--~ 555 (579)
|++|||+.+.++.+.+++||..||++|.|++|+.+|..|+|+|++|++|++|+|++|+++++++|++++|||+|||+ +
T Consensus 481 yv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~ 560 (581)
T 4epl_A 481 YAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPS 560 (581)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTT
T ss_pred EEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCC
Confidence 99999997777778899999999999779999999999999999999999999999999999999999999999999 8
Q ss_pred CCCHHHHHHHhcccceeecccCC
Q 008068 556 PTNKTVLQILCNNIGKSYFSTAY 578 (579)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
+++++++|+++||++|+|+++
T Consensus 561 --~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 561 --NAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp --CHHHHHHHHTTEEEEEECCCC
T ss_pred --CHHHHHHHHhcccccccCCCC
Confidence 999999999999999999875
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=1.3e-127 Score=1064.31 Aligned_cols=571 Identities=40% Similarity=0.724 Sum_probs=516.8
Q ss_pred CccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChhhHhcCCCCCCChhhhhhcCCCcccccchHHHHHHhcC
Q 008068 2 LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDG 81 (579)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yed~~p~ier~~~G 81 (579)
++++..+++++.++.||+.|+||.++|+++|++||++|++|+|||+|||++|+|++||+++|||++|||++||||||++|
T Consensus 11 ~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~~G 90 (609)
T 4b2g_A 11 LGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANG 90 (609)
T ss_dssp -----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHHTT
T ss_pred hhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHhcC
Confidence 45666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeEe
Q 008068 82 DISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAG 160 (579)
Q Consensus 82 e~~~ll~~~pi~~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p-~~~gk~l~~~~~~~~~~t~~Gi~~g 160 (579)
|.++|||++||.+|.+|||||+|++|+||+|++++..++.++.+|..++++++| +..||.|++++++.+.+|++|+|+|
T Consensus 91 e~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g 170 (609)
T 4b2g_A 91 DRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLAR 170 (609)
T ss_dssp CCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEE
T ss_pred CCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCcccc
Confidence 977999999999999999999999999999999999877778899999999999 7889999988888899999999999
Q ss_pred ccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHHH
Q 008068 161 TATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCD 240 (579)
Q Consensus 161 ~~S~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~~~f~~~ll~~~~~l~~~~~~l~~ 240 (579)
++|++++++.+|+.+|..+...|++|.+++.++|..+++||||||||.++++|..|+++|+++|+++++.++++|+++|+
T Consensus 171 ~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~ 250 (609)
T 4b2g_A 171 PVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTH 250 (609)
T ss_dssp CHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHhCCC
Q 008068 241 DIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDL 320 (579)
Q Consensus 241 dI~~g~~~~~~~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~~~~~~~~l~~~~g~v 320 (579)
||++|+++++++++++|.++.++|+|+|++|++|+++|++. +|.|++++|||||++|+||++|||.+|++++++++|++
T Consensus 251 dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~-~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~ 329 (609)
T 4b2g_A 251 DIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKD-NWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGL 329 (609)
T ss_dssp HHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSS-CCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSC
T ss_pred HHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCC-ccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999984 69999999999999999999999999999999999899
Q ss_pred CeeccccccCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCccccc-ccCCCccccccccCCCceEEEEEcccc
Q 008068 321 PLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQV-LCIEPKPVGLTEVKVGEEYEIIVTNVA 399 (579)
Q Consensus 321 ~v~~~~YgaSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~-~~~~~~~l~~~eve~G~~yeLVvTt~~ 399 (579)
|+++.+|+||||++|+++++.|+++..+|+++|+.+||||||.+ +.+... ..+++++++++||+.|++|||||||.+
T Consensus 330 p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~--~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~ 407 (609)
T 4b2g_A 330 PLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHE--HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA 407 (609)
T ss_dssp CEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGG--GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT
T ss_pred ccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEecc--ccccccccCCCCccccHhHcCCCCeEEEehhhhh
Confidence 99999999999999999999998877899999999999999987 431000 014688999999999999999999999
Q ss_pred ceeccccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEE
Q 008068 400 GLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYV 479 (579)
Q Consensus 400 Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~ 479 (579)
||||||+||+|+|+||++++|+|+|+||.+|+||++||||+|++|+.||.+|++.|+.+|++|.|||+.+|.++.||||+
T Consensus 408 GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv 487 (609)
T 4b2g_A 408 GLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYV 487 (609)
T ss_dssp SCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEE
T ss_pred hhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999777678999999999998888899999
Q ss_pred EEEEec-----cCCCHHHHHHHHHHHHHhccChhhHHHh-hcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCcc
Q 008068 480 IFWEVS-----GEVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRC 553 (579)
Q Consensus 480 ~~vE~~-----~~~~~~~l~~~~~~ld~~L~n~~Y~~~R-~~~~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~ 553 (579)
+|||+. ..++++.+++||..||++| |++|+.+| +.++|+|++|++|++|+|++|+++++++|++++|||+|||
T Consensus 488 ~~wEl~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~ 566 (609)
T 4b2g_A 488 IYWELLVKDSANSPSDELLGQCCLAMEESL-NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRC 566 (609)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHHS-CHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CCSS
T ss_pred EEEEEecccccCCCCHHHHHHHHHHHHHHh-CHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCcc
Confidence 999995 2356789999999999997 99999999 5569999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcccceeecccCC
Q 008068 554 VGPTNKTVLQILCNNIGKSYFSTAY 578 (579)
Q Consensus 554 ~~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
++ +++++++|+++||++|+|+++
T Consensus 567 ~~--~~~~~~~L~~~v~~~~~s~~~ 589 (609)
T 4b2g_A 567 VN--FTPIMELLDSRVVSSHFSPAL 589 (609)
T ss_dssp CC----CCHHHHHTTEEEEEECCSC
T ss_pred cC--CHHHHHHHHhcccccccCCCC
Confidence 99 999999999999999999985
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=1.2e-126 Score=1055.58 Aligned_cols=560 Identities=39% Similarity=0.703 Sum_probs=467.1
Q ss_pred CCccccCCChHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChhhHhcCCCCCCChhhhhhcCCCcccccchHHHHHHhc
Q 008068 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIID 80 (579)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edF~~~vPl~~Yed~~p~ier~~~ 80 (579)
|+|+++ ++++.++.|++.++||.++|+++|++||+.|++|+|||+| |++|++++|||++|||++|||++|||+||++
T Consensus 7 ~~~~~~--~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~ 83 (581)
T 4eql_A 7 MKPIFD--INETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVN 83 (581)
T ss_dssp ---------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHT
T ss_pred cccccC--CcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHc
Confidence 566554 3467789999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCccCCCcceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeE
Q 008068 81 GDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNA 159 (579)
Q Consensus 81 Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p-~~~gk~l~~~~~~~~~~t~~Gi~~ 159 (579)
||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++++| +..||.|++++.+.+.+|++|+|+
T Consensus 84 Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~ 163 (581)
T 4eql_A 84 GESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPA 163 (581)
T ss_dssp TCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEE
T ss_pred CCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeee
Confidence 9966999999999999999999999999999999999887788899999999999 888999998888888999999999
Q ss_pred eccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHH
Q 008068 160 GTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELC 239 (579)
Q Consensus 160 g~~S~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~~~f~~~ll~~~~~l~~~~~~l~ 239 (579)
|++|++++++.+|+.+|..+...|++|.+++.++|..+++||||||||.++++|..|+++|+++|+++++.++++|+++|
T Consensus 164 g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~ 243 (581)
T 4eql_A 164 RVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELC 243 (581)
T ss_dssp ECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888666778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCchHHHHHhhccCC-CCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecChHHHHHHHHHHhC
Q 008068 240 DDIREGVLSSRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAG 318 (579)
Q Consensus 240 ~dI~~g~~~~~~~~~~~r~~l~~~l~-~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~~~~~~~~l~~~~g 318 (579)
+||++|+++++++++++|.++..+++ |+|++|++|+++|.+. +|.|++++|||||++|+||++|||++|++++++++|
T Consensus 244 ~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~-~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g 322 (581)
T 4eql_A 244 SNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQN-SWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCN 322 (581)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSS-CCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHT
T ss_pred HHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCC-CccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcC
Confidence 99999999999999999999999997 9999999999999984 588999999999999999999999999999999999
Q ss_pred CCCeeccccccCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEccc
Q 008068 319 DLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV 398 (579)
Q Consensus 319 ~v~v~~~~YgaSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~ 398 (579)
++|+++++|+||||++|+|+++.|+++..+|+++|+.+||||||.+ +. +++++++++|||.|++|||||||.
T Consensus 323 ~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~--~~------~~~~~v~l~eVe~G~~YelViTt~ 394 (581)
T 4eql_A 323 DLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMD--GG------DKNDVVDLEDVKLGCTYEPVVTNF 394 (581)
T ss_dssp TCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECS--TT------CCSSCEEGGGCCTTCEEEEEEECS
T ss_pred CCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecc--cc------CCCcEeCHHHcCCCceEEEEEeec
Confidence 9999999999999999999999998777789999999999999987 43 246899999999999999999999
Q ss_pred cceeccccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceE
Q 008068 399 AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHY 478 (579)
Q Consensus 399 ~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y 478 (579)
+||||||+||+|+|++|++++|+|+|+||.+|+||++|||++|++|++||.+|++.|+.+|++|.|||+.+|.++.||||
T Consensus 395 ~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy 474 (581)
T 4eql_A 395 AGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHY 474 (581)
T ss_dssp SSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSBEE
T ss_pred cceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999866657899999999999888889999
Q ss_pred EEEEEecc-----------CCCHHHHHHHHHHHHHhccChhhHHHh-hcCCcCCeEEEEeccchHHHHHHHHhcCCCCCC
Q 008068 479 VIFWEVSG-----------EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALS 546 (579)
Q Consensus 479 ~~~vE~~~-----------~~~~~~l~~~~~~ld~~L~n~~Y~~~R-~~~~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~ 546 (579)
++|||+.. .++++.+++||..||++| |++|+.+| +.++|+||+|++|++|+|++|+++++++|+++|
T Consensus 475 ~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~g 553 (581)
T 4eql_A 475 VVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESL-DNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTG 553 (581)
T ss_dssp EEECC---------------CCHHHHHHHHHHHHHTS-CHHHHHHHHTTCCBCCCEEEC---------------------
T ss_pred EEEEEEecccccccccccCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCC
Confidence 99999853 145579999999999997 99999999 566999999999999999999999999999999
Q ss_pred CCCCCcccCCCCHHHHHHHhcccceeecc
Q 008068 547 QFKTPRCVGPTNKTVLQILCNNIGKSYFS 575 (579)
Q Consensus 547 Q~K~Pr~~~~~~~~~~~~l~~~~~~~~~~ 575 (579)
|||+|||++ +++++++|+++||++|+|
T Consensus 554 Q~K~PR~~~--~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 554 QYKTPRCIK--SGKALQVLETCVVAKFFS 580 (581)
T ss_dssp -------------------------CEEC
T ss_pred CcCCCcccC--CHHHHHHHHhcchheeec
Confidence 999999999 999999999999999997
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.91 E-value=3.5e-23 Score=222.86 Aligned_cols=377 Identities=15% Similarity=0.163 Sum_probs=222.4
Q ss_pred cHHHHHHHHHHHHHHHcCCChhhHhc----CCC--CCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCcc--C-CCcc
Q 008068 23 DAERIQRETLRKILEENASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT--G-KPIT 93 (579)
Q Consensus 23 ~~~~~Q~~~L~~iL~~~~~T~ygr~~----gf~--~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~--~-~pi~ 93 (579)
+.++.|.+.|+++++..++++|++++ |+. .|.+.+|++ ++|++++++++.... ...++ . +.+.
T Consensus 18 ~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p-------~~~~~~~~~~~~a 89 (436)
T 3qov_A 18 KLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP-------FGLVAGDMKRDGV 89 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT-------TTTCCSCHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC-------CccccCCCcCCeE
Confidence 46789999999999877999999974 664 688999998 799999999875321 11222 1 3345
Q ss_pred eeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhh
Q 008068 94 TISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFK 173 (579)
Q Consensus 94 ~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~ 173 (579)
+...||||| |+||-++.|...+......+.. ....+.+..+..+. ...+ .+...+.
T Consensus 90 ~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~~----~~~~~~~~~~d~~~-~~~~----------~~~~~~~-------- 145 (436)
T 3qov_A 90 RIHSSSGTT-GNPTVIVHSQHDLDSWANLVAR----CLYMVGIRKTDVFQ-NSSG----------YGMFTGG-------- 145 (436)
T ss_dssp EEEECSCSS-SCCCEEEEEHHHHHHHHHHHHH----HHHHTTCCTTSEEE-ECSC----------CTTCHHH--------
T ss_pred EEEECCCcC-CCCeEEEECHHHHHHHHHHHHH----HHHHcCCCCCCEEE-ECcc----------cccchhH--------
Confidence 778899999 9999999998876543322111 11112233342222 1100 0000000
Q ss_pred hhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008068 174 AEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRIT 252 (579)
Q Consensus 174 ~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~-~~f~~~ll~~~~~l~~~~~~l~~dI~~g~~~~~~~ 252 (579)
....+..+..+. .++. ..+ +-+.+++.|++..+.-..
T Consensus 146 ----------------------~~~~~~~l~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~~~- 183 (436)
T 3qov_A 146 ----------------------LGFQYGAERLGC------LTVPAAAG-------------NSKRQIKFISDFKTTALH- 183 (436)
T ss_dssp ----------------------HHHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHTCCEEE-
T ss_pred ----------------------HHHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHHCCCEEE-
Confidence 000011111110 0110 011 113444555555443211
Q ss_pred chHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeecccccc
Q 008068 253 VPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGS 329 (579)
Q Consensus 253 ~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~Yga 329 (579)
..|..+..|.+...+. +.. .-+++++ .+.+|| ....++++++.| |++++ +.||+
T Consensus 184 -------------~~P~~~~~l~~~~~~~----~~~-~~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~ 240 (436)
T 3qov_A 184 -------------AIPSYAIRLAEVFQEE----GID-PRETTLK---TLVIGAEPHTDEQRRKIERML-NVKAY-NSFGM 240 (436)
T ss_dssp -------------CCHHHHHHHHHHHHHT----TCC-TTSSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEE
T ss_pred -------------ECHHHHHHHHHHHHHc----CCC-cccCCcc---EEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcc
Confidence 1234444443332221 111 1246788 667776 366778888888 69999 99999
Q ss_pred Ccc-cceecCCCCCCcccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEccc----cceecc
Q 008068 330 SEG-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV----AGLYRY 404 (579)
Q Consensus 330 SEg-~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~----~Gl~RY 404 (579)
||+ .+++... |+. ..++++..++..+|+++++ ++. .|++|+.|||+|++. ....||
T Consensus 241 TE~~~~~~~~~--~~~-~~g~~~~~~~~~v~i~d~~-----------~g~-----~~~~g~~Gel~v~~~~~~~~~~~~y 301 (436)
T 3qov_A 241 TEMNGPGVAFE--CQE-QNGMHFWEDCYLVEIIDPE-----------TGE-----PVPEGEIGELVLTTLDREMMPLIRY 301 (436)
T ss_dssp GGGTEEEEEEE--CTT-CSSEEECTTTEEEEEECTT-----------TCS-----BCSTTCCEEEEEEESSCCSSCCCSE
T ss_pred hhhcCCeeEEe--cCC-CCeeEEccCceEEEEEECC-----------CCC-----CCCCCCceEEEEeccCcCCceEEEE
Confidence 997 3333322 221 2456666567788998854 123 457899999999874 236699
Q ss_pred ccCCEEEEeceeCCC----CEE-EEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEE
Q 008068 405 RLGDVVKVMGFHNST----PEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYV 479 (579)
Q Consensus 405 r~GDvv~v~~~~~~~----P~i-~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~ 479 (579)
+|||+++++...|.| |++ .|+||.+|+|+++|++|++.+||++|.+. .++. -.+.+..+........+
T Consensus 302 ~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~-~~~vv~~~~~~~~~~l~ 374 (436)
T 3qov_A 302 RTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG-SNYLITLETVNNQDEMI 374 (436)
T ss_dssp EEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE-EEEEEEEEEETTEEEEE
T ss_pred EcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC-CcEEEEEEcCCCCcEEE
Confidence 999999998654433 334 99999999999999999999999999753 2322 12333322211224566
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHH
Q 008068 480 IFWEVSGEVND---EVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (579)
Q Consensus 480 ~~vE~~~~~~~---~~l~~~~~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~~gtf~ 532 (579)
++|+.. +... ...+++.+.+.+.| +.| .-.|..|.+|+.+.|.
T Consensus 375 a~v~~~-~~~~~~~~~~~~l~~~l~~~l--~~~-------~~~p~~i~~v~~~~lP 420 (436)
T 3qov_A 375 VEVELS-DLSTDNYIELEKIRRDIIRQL--KDE-------ILVTPKVKLVKKGSLP 420 (436)
T ss_dssp EEEEEC-TTCCCCHHHHHHHHHHHHHHH--HHH-------HSSCCEEEEECTTCCC
T ss_pred EEEEEc-CccccchhhHHHHHHHHHHHH--HHh-------cCCceEEEEeCCCccc
Confidence 888886 4221 13344445555554 111 1246689999988776
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.90 E-value=2.2e-22 Score=216.75 Aligned_cols=381 Identities=15% Similarity=0.130 Sum_probs=220.0
Q ss_pred cHHHHHHHHHHHHHHH-cCCChhhHhc----CC--CCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccCCCccee
Q 008068 23 DAERIQRETLRKILEE-NASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 95 (579)
Q Consensus 23 ~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf--~~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~~f 95 (579)
+.++.|.+.|+.+|+. .++++|++++ |+ ..+.+.+||+ ++|+++|++++.... .+- .-...+.+.++
T Consensus 22 ~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~~--~~~~~~~~~~i 95 (437)
T 2y27_A 22 ELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FGM--FAVPQDRISRI 95 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TTT--CSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--ccCChhHeEEE
Confidence 4678999999999997 6899999985 54 4588999998 799999998864321 010 11233445678
Q ss_pred ecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhhh
Q 008068 96 SRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 175 (579)
Q Consensus 96 ~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~~~ 175 (579)
..||||| |+||-+++|...+......+... ...+++..+..+. ...+ .+.-.+. .
T Consensus 96 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~~~d~~~-~~~~----------~~~~~~~---------~ 150 (437)
T 2y27_A 96 HASSGTT-GKPTVVGYTAADIDTWANLVARS----IRAAGARRGDKVH-VSYG----------YGLFTGG---------L 150 (437)
T ss_dssp EECCCTT-SSCCEEEECHHHHHHHHHHHHHH----HHHTTCCTTCEEE-ECSC----------CSSSHHH---------H
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHH----HHHcCCCCCCEEE-Eccc----------ccccccc---------h
Confidence 8899999 99999999988765433221111 1112333332222 1100 0000000 0
Q ss_pred hhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCch
Q 008068 176 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVP 254 (579)
Q Consensus 176 ~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~-~~f~~~ll~~~~~l~~~~~~l~~dI~~g~~~~~~~~~ 254 (579)
...+..++.+. .++. ..+ +.+.+++.|++..+.-
T Consensus 151 ---------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~----- 185 (437)
T 2y27_A 151 ---------------------GAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDFRPDI----- 185 (437)
T ss_dssp ---------------------HHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHHCCSE-----
T ss_pred ---------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHhCCCE-----
Confidence 00011111110 0110 010 2344555555555432
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCc
Q 008068 255 SIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSE 331 (579)
Q Consensus 255 ~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSE 331 (579)
+.+ .|..+..|.+...+. + ... -+++++ .+.+|| ....++++++.+ |++++ +.||+||
T Consensus 186 -----l~~----~Ps~~~~l~~~~~~~-~---~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE 246 (437)
T 2y27_A 186 -----IMV----TPSYMLSIADEIERQ-G---LDP-VQSSLR---IGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSE 246 (437)
T ss_dssp -----EEE----CHHHHHHHHHHHHHT-T---CCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETT
T ss_pred -----EEE----CHHHHHHHHHHHHHc-C---CCc-ccCCee---EEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchh
Confidence 111 234444443332210 1 111 146788 566666 366778888888 68999 9999999
Q ss_pred c-cceecCCCCCCcccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEccccc----eecccc
Q 008068 332 G-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRL 406 (579)
Q Consensus 332 g-~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~~G----l~RYr~ 406 (579)
+ ..++... |+....++++..++..+|+++++ +++ +|+.|+.|||+||+... +.||+|
T Consensus 247 ~~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~-----------~g~-----~~~~g~~Gel~v~~~t~~~~~~~~y~T 308 (437)
T 2y27_A 247 VMGPGVASE--CVETKDGPTIWEDHFYPEIIDPE-----------TGE-----VLPDGELGELVFTSLTKEALPIIRYRT 308 (437)
T ss_dssp TTEEEEEEC--CTTTCSSCEECTTTEEEEEECTT-----------TCC-----BCCTTCCEEEEEEESSCSSSCCCSEEE
T ss_pred hcCCeeEEe--cCCCCCceeEccCceEEEEEcCC-----------CCC-----CCCCCCccEEEEecCCcCCchhheeec
Confidence 5 3222221 22211256665567788998764 123 45689999999997533 679999
Q ss_pred CCEEEEeceeC-CCCEE-EEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEe
Q 008068 407 GDVVKVMGFHN-STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEV 484 (579)
Q Consensus 407 GDvv~v~~~~~-~~P~i-~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~ 484 (579)
||+++++...+ ..|++ .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+........+++|+.
T Consensus 309 GDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 309 RDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ------RALA-PHYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp EEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC------TTBC-SCCEEEEEEETTEEEEEEEECB
T ss_pred CCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC------cCcC-ccEEEEEeecCCCceEEEEEEE
Confidence 99999986212 35667 89999999999999999999999999753 2321 1233332211122456678887
Q ss_pred ccCCC--HHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHH
Q 008068 485 SGEVN--DEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (579)
Q Consensus 485 ~~~~~--~~~l~~~~~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~~gtf~ 532 (579)
..+.. ....+++.+.+.+.| +.|. --|..|.++..+.|.
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l--~~~~-------~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDI--KSLI-------GVTAVINVLPVNGIE 422 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHH--HHHH-------CCCEEEEECCTTCSC
T ss_pred CCCccchhhhHHHHHHHHHHHH--HHhc-------CCceEEEEeCCCCcc
Confidence 54321 123334444444443 1111 145678888877765
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.90 E-value=3.9e-22 Score=215.13 Aligned_cols=380 Identities=17% Similarity=0.116 Sum_probs=218.5
Q ss_pred cHHHHHHHHHHHHHHH-cCCChhhHhc----CC--CCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccCCCccee
Q 008068 23 DAERIQRETLRKILEE-NASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 95 (579)
Q Consensus 23 ~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf--~~i~s~edF~~~vPl~~Yed~~p~ier~~~Ge~~~ll~~~pi~~f 95 (579)
+.++.|.+.|+++|+. .++++|++++ |+ ..|.+++||+ ++|+++|++++.... .+- .-...+.+.+.
T Consensus 24 ~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~~i 97 (443)
T 2y4o_A 24 ELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVVRV 97 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheEEE
Confidence 3678999999999997 5899999985 55 4688999998 899999999865321 010 11233445678
Q ss_pred ecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhhh
Q 008068 96 SRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 175 (579)
Q Consensus 96 ~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~~~ 175 (579)
..||||| |+||.+++|...+......+... ...+++..+..+. ... |.+...+. .
T Consensus 98 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~~~d~~l-~~~----------~~~~~~~~---------~ 152 (443)
T 2y4o_A 98 HASSGTT-GKPTVVGYTARDIDTWANVTARS----IRAAGGRPGDTLH-NAF----------GYGLFTGG---------L 152 (443)
T ss_dssp EEECCSS-SSCEEEEECHHHHHHHHHHHHHH----HHHTTCCTTCEEE-ECS----------CCSSSHHH---------H
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHH----HHHcCCCCCCEEE-Eec----------cCcccccH---------H
Confidence 8899999 99999999988765433221111 1112333332222 110 00000000 0
Q ss_pred hhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCch
Q 008068 176 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVP 254 (579)
Q Consensus 176 ~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~-~~f~~~ll~~~~~l~~~~~~l~~dI~~g~~~~~~~~~ 254 (579)
...+..++.+. .++. ..+ +.+.+++.|++..+.-
T Consensus 153 ---------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~----- 187 (443)
T 2y4o_A 153 ---------------------GIHYGAERLGC------MVVPMSGG-------------QTEKQVQLIRDFEPKI----- 187 (443)
T ss_dssp ---------------------HHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHCCSE-----
T ss_pred ---------------------HHHHHHHHcCC------EEEECCCC-------------CHHHHHHHHHHhCCcE-----
Confidence 00001111110 0110 000 1234455555554432
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCc
Q 008068 255 SIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSE 331 (579)
Q Consensus 255 ~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSE 331 (579)
+.+ .|..+..|.+...+. + ... -+++++ .+.+|| ....++++++.+ |++++ +.||+||
T Consensus 188 -----l~~----~Ps~~~~l~~~~~~~-~---~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE 248 (443)
T 2y4o_A 188 -----ILV----TPSYMLNLIDEMVRQ-G---MDP-AESSLK---IGIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSE 248 (443)
T ss_dssp -----EEE----CHHHHHHHHHHHHHT-T---CCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETT
T ss_pred -----EEE----CHHHHHHHHHHHHHc-C---CCc-ccCCce---EEEECCCcCCHHHHHHHHHHh-CcCEE-eccCchh
Confidence 111 233344443332210 1 111 246788 666666 366778888888 68999 9999999
Q ss_pred c-cceecCCCCCCcccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEccccc----eecccc
Q 008068 332 G-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRL 406 (579)
Q Consensus 332 g-~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~~G----l~RYr~ 406 (579)
+ ..++... |+....++++..++..+|+++++ +++ ++++|+.|||+||+... +.||+|
T Consensus 249 ~~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~-----------~g~-----~~~~G~~Gel~v~~~t~~~~p~~~y~T 310 (443)
T 2y4o_A 249 VMGPGVACE--CVETKDGPVIWEDHFYPEIIDPV-----------TGE-----VLPDGSQGELVFTSLTKEAMPVIRYRT 310 (443)
T ss_dssp TTEEEEEEE--CTTTCCSEEECTTTEEEEEECTT-----------TCC-----BCCTTCCEEEEEEESSCSSSCCSSEEE
T ss_pred hcCCeEEec--cCCCCCceEEccCCeEEEEEcCC-----------CCC-----CCCCCCceEEEEeCCCcccChhheeec
Confidence 5 3222211 22211256665567788998764 123 45689999999997532 569999
Q ss_pred CCEEEEeceeC--CCCEE-EEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEE
Q 008068 407 GDVVKVMGFHN--STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWE 483 (579)
Q Consensus 407 GDvv~v~~~~~--~~P~i-~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE 483 (579)
||+++++. .| ..++| .|+||.+|+|+++|++|++.+||++|.+. .++. ..+.+..+........+++|+
T Consensus 311 GDl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v~ 382 (443)
T 2y4o_A 311 RDLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAVE 382 (443)
T ss_dssp EEEECEEC-CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEcC-CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEEE
Confidence 99999987 31 13556 89999999999999999999999999753 2332 123333221111234567787
Q ss_pred ecc--C--CCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHH
Q 008068 484 VSG--E--VNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (579)
Q Consensus 484 ~~~--~--~~~~~l~~~~~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~~gtf~ 532 (579)
... + ......+++.+.+.+.| ....--|..|.++..+.|.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~~l~~~l---------~~~~~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 383 LRSEAAASVTDGERAALARELQHRI---------KTMVGVSSGVTVLAAGGIP 426 (443)
T ss_dssp ECHHHHTTCCHHHHHHHHHHHHHHH---------HHHTCCCCEEEEECTTCSC
T ss_pred ECCcccccchhhHHHHHHHHHHHHH---------HHHhCCceEEEEeCCCccc
Confidence 743 1 12223344444454443 1111145688899877765
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.64 E-value=1.6e-14 Score=158.46 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=94.5
Q ss_pred cccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceec-C--CC----CCCcccccceecCCceEE
Q 008068 289 PELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGAN-V--NP----SLPPELATFAVLPNIGYF 358 (579)
Q Consensus 289 ~~lwP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~-~--~~----~~~~~~~~~~l~~~~~~~ 358 (579)
....++++ .+.+|| .....+++++.+++++++ +.||+||+.+.+. . .. .......|.. .+ +.-+
T Consensus 256 ~~~~~~l~---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~-~~~~ 329 (511)
T 3e7w_A 256 QDLLPHAD---TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGFA-KP-DMNI 329 (511)
T ss_dssp TTTCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEE-CT-TCEE
T ss_pred cccCCccc---EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcce-eC-CCEE
Confidence 34567888 666666 366677788888889999 9999999743221 1 00 0111112332 22 3344
Q ss_pred EEEeCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee-----------------ccccCCEEEEeceeCC
Q 008068 359 EFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNS 418 (579)
Q Consensus 359 Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~-----------------RYr~GDvv~v~~~~~~ 418 (579)
++++.+ ++ ++++|+.|||+|++ ..||| +|+|||++++.
T Consensus 330 ~i~d~~------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~----- 387 (511)
T 3e7w_A 330 FIMDEE------------GQ-----PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ----- 387 (511)
T ss_dssp EEECTT------------SC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----
T ss_pred EEECCC------------CC-----CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----
Confidence 555432 23 46789999999976 34554 69999999884
Q ss_pred CCEEEEEeeeCceEeeceeecCHHHHHHHHHHH
Q 008068 419 TPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 419 ~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
...+.|+||.+|+|+++|++|++.+||+++.+.
T Consensus 388 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred CCeEEEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 478999999999999999999999999999863
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.64 E-value=9.6e-15 Score=163.19 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=95.2
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCcccccceecCCceEEEEEeCCCC
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 366 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~ 366 (579)
+++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+.+...+. ..++..|..+ .+.-+++++.+
T Consensus 340 l~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~--~~~~v~ivd~~-- 410 (580)
T 3etc_A 340 FSTLK---YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGKPT--PGYKIELMDRD-- 410 (580)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBEEC--TTCEEEEECTT--
T ss_pred Cccce---EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCccccCC--CCCEEEEECCC--
Confidence 56788 6677773 56667777778 68999 99999998554332221 1222234332 33345555543
Q ss_pred CcccccccCCCccccccccCCCceEEEEEccc--------cceec-------------cccCCEEEEeceeCCCCEEEEE
Q 008068 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV--------AGLYR-------------YRLGDVVKVMGFHNSTPELKFI 425 (579)
Q Consensus 367 ~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~--------~Gl~R-------------Yr~GDvv~v~~~~~~~P~i~f~ 425 (579)
++ ++++|+.|||+|++. .|||. |+|||+++++. .+.+.|+
T Consensus 411 ----------g~-----~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~l~~~ 471 (580)
T 3etc_A 411 ----------GR-----LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGYLWFV 471 (580)
T ss_dssp ----------SC-----BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEE
T ss_pred ----------CC-----CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCcEEEE
Confidence 23 567899999999852 45653 99999999985 6899999
Q ss_pred eeeCceEeeceeecCHHHHHHHHHH
Q 008068 426 CRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 426 gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
||.+|+|+++|++|++.+||++|.+
T Consensus 472 GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 472 GRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp EESSSCEEETTEEECHHHHHHHHTT
T ss_pred ecCCCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999875
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.62 E-value=2.7e-14 Score=158.28 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=96.7
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCcccccceecCCceEEEEEeCCCC
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 366 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~ 366 (579)
+++|+ .+.+||. ...++++++.+++++++ +.||+||+...+...+. ...+..|.. . .+.-+++++++
T Consensus 308 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~~-~-~~~~~~i~d~~-- 379 (548)
T 2d1s_A 308 LSNLV---EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGKV-V-PLFKAKVIDLD-- 379 (548)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBEE-C-TTCEEEEECTT--
T ss_pred cccee---EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCcc-C-CCceEEEEeCC--
Confidence 56788 6666763 66777788888778899 99999997543322221 112223332 2 23456666643
Q ss_pred CcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEeeeC
Q 008068 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRN 429 (579)
Q Consensus 367 ~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~~ 429 (579)
++. ++.+|+.|||+|++ ..||| +|+|||+++++. .+.+.|+||.+
T Consensus 380 ---------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~~ 441 (548)
T 2d1s_A 380 ---------TKK-----SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDRLK 441 (548)
T ss_dssp ---------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEEGG
T ss_pred ---------cCc-----cCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEecccc
Confidence 123 45789999999987 35665 599999999985 67899999999
Q ss_pred ceEeeceeecCHHHHHHHHHH
Q 008068 430 LLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 430 d~i~~~Gekv~e~~v~~av~~ 450 (579)
|+|+++|++|++.+||++|.+
T Consensus 442 d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 442 SLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp GCBCBTTCCBCHHHHHHHHHT
T ss_pred ceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999975
No 10
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.62 E-value=2.6e-14 Score=150.13 Aligned_cols=319 Identities=12% Similarity=0.093 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHH-cC---CChhhHhc----CCC---CCCChhhhhhcCCCcccccchH-HHHHHhcCCCCCCccCCCcc
Q 008068 26 RIQRETLRKILEE-NA---SAEYLQNL----GLN---GRTDPESFKSCVPLVTHEDLQP-YIQRIIDGDISPILTGKPIT 93 (579)
Q Consensus 26 ~~Q~~~L~~iL~~-~~---~T~ygr~~----gf~---~i~s~edF~~~vPl~~Yed~~p-~ier~~~Ge~~~ll~~~pi~ 93 (579)
..+++.|+++++. .+ +++|||++ |++ .|.+.+|++ ++|+++ ++++. +.+.+.. .. +..+.+.
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a 94 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHP 94 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCC
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccE
Confidence 3578889999987 57 99999984 664 688999997 799999 99865 3332221 01 1345556
Q ss_pred eeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhh
Q 008068 94 TISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFK 173 (579)
Q Consensus 94 ~f~~TSGTT~G~~K~iP~t~~~l~~~~~~~~~~~~~l~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~ 173 (579)
+...||||| |+||-+.+|...+...... .......+.+..+..+. ...+ .|.-....
T Consensus 95 ~i~~TSGTT-G~PKgv~~t~~~~~~~~~~----~~~~~~~~~~~~~d~~l-~~~p----------~g~~~~g~------- 151 (369)
T 3hgu_A 95 QVYESGGTT-GAPKYVVAYDAWIEALISW----RMSGYQHRPGRPSGNTL-AAIP----------TGPHIVGA------- 151 (369)
T ss_dssp EEEEECC----CCEEEEECHHHHHHHHHH----HTTTTTTSTTCCCCEEE-ECSC----------CTTCHHHH-------
T ss_pred EEEECCCCC-CCCCEEEECHHHHHHHHHH----HHhhHHhhCCCCcceEE-EecC----------CCchhhhH-------
Confidence 888999999 9999999998766432211 11111112223332111 1111 00000000
Q ss_pred hhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 008068 174 AEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITV 253 (579)
Q Consensus 174 ~~~~~~~~~~~~P~~~~~~~d~~~~~y~~Ll~al~~~~~l~~i~~~f~~~ll~~~~~l~~~~~~l~~dI~~g~~~~~~~~ 253 (579)
.........-. .++ ..++.-.....+. ... .....-...+...+++++.|++..+.-....
T Consensus 152 -~~~~~~~~~G~--~v~-~~~~dp~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~ 212 (369)
T 3hgu_A 152 -INKERALRLGG--MFF-SIDIDPRWVKRSL------------SEG---DTATVRKYTHHLVDQVQNTLMNQDIRFLVTT 212 (369)
T ss_dssp -HHHHHHHHTTS--CEE-CCCCCHHHHHHHH------------HTT---CHHHHHHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred -HHHHHHHHcCC--EEE-CccCChHHHHHhh------------ccc---chhhhHHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 00000000000 000 0000000000000 000 0011111233344566667777766442222
Q ss_pred hHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---hHHHHHHHH-HHhCCCCeecccccc
Q 008068 254 PSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLR-HYAGDLPLMSADYGS 329 (579)
Q Consensus 254 ~~~r~~l~~~l~~~p~~A~~L~~~~~~~~g~~g~~~~lwP~l~~i~~~~~g~---~~~~~~~l~-~~~g~v~v~~~~Yga 329 (579)
| ..+..|.+... ......++++ .+.+|| ....+++++ +.||+++++ +.||+
T Consensus 213 P--------------s~~~~l~~~~~-------~~~~~~~~lr---~i~~gGe~l~~~~~~~~~~~~~p~~~v~-~~YG~ 267 (369)
T 3hgu_A 213 P--------------PVLRELLKRPE-------VVLQMKQSLA---QITLGGTELNLDEIKFIASEILPDCEFS-ASYGS 267 (369)
T ss_dssp H--------------HHHHHHTTCHH-------HHHHHHHHCS---EEEEESSCCCHHHHHHHHHHTCTTSEEE-EEEEE
T ss_pred H--------------HHHHHHHhhhh-------hhccccCCee---EEEECCccCCHHHHHHHHHHhCCCcEEE-cccCc
Confidence 2 22222211000 0001134677 666666 367778888 888789999 99999
Q ss_pred CcccceecCCCCCCcccccceec----CCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEcccc---cee
Q 008068 330 SEGWIGANVNPSLPPELATFAVL----PNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA---GLY 402 (579)
Q Consensus 330 SEg~i~~~~~~~~~~~~~~~~l~----~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt~~---Gl~ 402 (579)
||+..... .|+....|.++. ..+..+++++++ +++ .|++|+.|||+||+.. -+.
T Consensus 268 TE~~~~~~---~~~~~~~G~~~~~~~~~~~~~v~ivD~~-----------~g~-----~vp~G~~GEl~vt~l~~~~~l~ 328 (369)
T 3hgu_A 268 TSALGVSR---SLLITSESQQVIYDSFSPFITYDVVDSI-----------TAQ-----TVEYGERGNVIVTHLSPWAFYP 328 (369)
T ss_dssp GGGTEEEE---ECCBCTTCSSCEEECCTTTEEEEEECTT-----------TCS-----BCCTTCEEEEEEEEEETTEEEE
T ss_pred hhhhccee---ccccccCCCcccccCCCCCeEEEEECCC-----------CCc-----CCCCCCceEEEEEEcCcccccc
Confidence 99753322 232211344421 233567777653 123 4578999999999852 289
Q ss_pred ccccCCEEEEeceeCCCC-----EEEEEeeeCceEeece
Q 008068 403 RYRLGDVVKVMGFHNSTP-----ELKFICRRNLLLTINI 436 (579)
Q Consensus 403 RYr~GDvv~v~~~~~~~P-----~i~f~gR~~d~i~~~G 436 (579)
||+|||+++.....+.-+ -+..++|.++..++.|
T Consensus 329 ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 329 RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp EEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred cccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 999999998875433211 3455666555555544
No 11
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.61 E-value=2.1e-14 Score=158.50 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=96.8
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCccccee--cC----CC-CCCcccccceecCCceEEEE
Q 008068 291 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGA--NV----NP-SLPPELATFAVLPNIGYFEF 360 (579)
Q Consensus 291 lwP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~--~~----~~-~~~~~~~~~~l~~~~~~~Ef 360 (579)
-.++|+ .+.+||. ....+++++.+++++++ +.||+||+...+ +. .+ ...++..|..+ .+.-+++
T Consensus 295 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i 368 (536)
T 3ni2_A 295 DLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVV--RNAEMKI 368 (536)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCEEC--SSCEEEE
T ss_pred CCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeEeC--CCcEEEE
Confidence 456888 6666663 66677788888889999 999999975322 11 01 11122233322 2334566
Q ss_pred EeCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEE
Q 008068 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELK 423 (579)
Q Consensus 361 ip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~ 423 (579)
++++ ++. ++..|+.|||+|++ ..||| +|||||+++++. .+.+.
T Consensus 369 ~d~~-----------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l~ 428 (536)
T 3ni2_A 369 VDPE-----------TGA-----SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDELF 428 (536)
T ss_dssp ECTT-----------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEE
T ss_pred EeCC-----------CCc-----CCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceEE
Confidence 6643 123 45789999999986 46676 499999999985 68999
Q ss_pred EEeeeCceEeeceeecCHHHHHHHHHH
Q 008068 424 FICRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 424 f~gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
|+||.+|+|+++|++|++.+||+++.+
T Consensus 429 ~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 429 IVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp EEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred EEecccceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999875
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.60 E-value=3.8e-14 Score=155.29 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=95.8
Q ss_pred ccCCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCC--CCCcccccceecCCceEEEEEeCC
Q 008068 290 ELFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNP--SLPPELATFAVLPNIGYFEFIPQR 364 (579)
Q Consensus 290 ~lwP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~--~~~~~~~~~~l~~~~~~~Efip~~ 364 (579)
...++++ .+.+||. ....+++++.+ +++++ +.||+||+.+...... ...++..|.. ..+.-+++++.+
T Consensus 265 ~~~~~lr---~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p--~~~~~~~i~d~~ 337 (503)
T 4fuq_A 265 ETTGHMR---LFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPA--LPGVSARVTDPE 337 (503)
T ss_dssp TTTTTCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEEB--CTTCEEEEECTT
T ss_pred cchhhcE---EEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCccccC--CCCeEEEEEECC
Confidence 3456788 6677773 55666777778 58999 9999999854332111 1112222322 233445666543
Q ss_pred CCCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEee
Q 008068 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 427 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR 427 (579)
+++ ++++|+.|||+|++ ..||| +|+|||+++++. .+.+.|+||
T Consensus 338 -----------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR 397 (503)
T 4fuq_A 338 -----------TGK-----ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHILGR 397 (503)
T ss_dssp -----------TCC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEECCS
T ss_pred -----------CCC-----CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEEEec
Confidence 123 46789999999986 46776 399999999985 689999999
Q ss_pred eCceEeeceeecCHHHHHHHHHH
Q 008068 428 RNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 428 ~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.+|+|+++|++|++.+||+++.+
T Consensus 398 ~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 398 GKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp STTCEEETTEEECHHHHHHHHHT
T ss_pred CCCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999875
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.60 E-value=2.3e-14 Score=157.16 Aligned_cols=134 Identities=15% Similarity=0.188 Sum_probs=93.8
Q ss_pred ccCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCC-------CCcccccceecCCceEEE
Q 008068 290 ELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS-------LPPELATFAVLPNIGYFE 359 (579)
Q Consensus 290 ~lwP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~-------~~~~~~~~~l~~~~~~~E 359 (579)
...++++ .+.+|| .....+++.+.|++++++ +.||+||+.+.+..... ......|..+ .+.-+.
T Consensus 258 ~~~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~ 331 (512)
T 3fce_A 258 SMLPNMK---TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK--SDCRLL 331 (512)
T ss_dssp TTSTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEEC--TTCEEE
T ss_pred hhCcccc---EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccccc--CCcEEE
Confidence 3467888 666666 266667788888889999 99999997542211000 0111122321 223344
Q ss_pred EEeCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee-----------------ccccCCEEEEeceeCCC
Q 008068 360 FIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNST 419 (579)
Q Consensus 360 fip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~-----------------RYr~GDvv~v~~~~~~~ 419 (579)
.++.+ +. ++++|+.|||+|++ ..||| +|+|||++++ . .
T Consensus 332 i~d~~------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~----d 389 (512)
T 3fce_A 332 IMKED------------GT-----IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E----N 389 (512)
T ss_dssp EECSS------------SC-----BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E----T
T ss_pred EECCC------------CC-----CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c----C
Confidence 44432 23 45789999999976 46666 5999999988 3 4
Q ss_pred CEEEEEeeeCceEeeceeecCHHHHHHHHHHH
Q 008068 420 PELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 420 P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
..+.|+||.+|+|+++|++|++.+||+++.+.
T Consensus 390 G~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 390 GLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp TEEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred CEEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 79999999999999999999999999999753
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.59 E-value=6.9e-15 Score=161.54 Aligned_cols=133 Identities=18% Similarity=0.189 Sum_probs=89.1
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC-------CCcccccceecCCceEEEE
Q 008068 291 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS-------LPPELATFAVLPNIGYFEF 360 (579)
Q Consensus 291 lwP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~-------~~~~~~~~~l~~~~~~~Ef 360 (579)
-.|+++ .+.+||. ....+++.+.+++++++ +.||+||+.+.+..... ......|.. .+ +.-+.+
T Consensus 262 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p-~~-~~~~~i 335 (521)
T 3l8c_A 262 KMPALT---HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGYP-KP-DSPTYI 335 (521)
T ss_dssp TCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEEE-CT-TSCEEE
T ss_pred cCccce---EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCccccccc-cC-CCEEEE
Confidence 456788 6666662 55667777788789999 99999997543211000 011112332 12 233445
Q ss_pred EeCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee-----------------ccccCCEEEEeceeCCCC
Q 008068 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNSTP 420 (579)
Q Consensus 361 ip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~-----------------RYr~GDvv~v~~~~~~~P 420 (579)
++.+ +. ++..|+.|||+|++ ..||| +|+|||+++++. .+
T Consensus 336 ~d~~------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG 394 (521)
T 3l8c_A 336 IDED------------GK-----ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DN 394 (521)
T ss_dssp ECTT------------SC-----BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SS
T ss_pred ECCC------------cC-----CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CC
Confidence 5432 22 56789999999977 46665 599999999985 68
Q ss_pred EEEEEeeeCceEeeceeecCHHHHHHHHHH
Q 008068 421 ELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 421 ~i~f~gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 395 ~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 395 ILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp CEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred eEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 899999999999999999999999999975
No 15
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.58 E-value=1.6e-14 Score=160.86 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=73.7
Q ss_pred ccCCCceEEEEEcc---cccee----------------------ccccCCEEEEeceeCCCCEEEEEeeeCceEeeceee
Q 008068 384 EVKVGEEYEIIVTN---VAGLY----------------------RYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDK 438 (579)
Q Consensus 384 eve~G~~yeLVvTt---~~Gl~----------------------RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gek 438 (579)
++++|+.|||+|++ ..||| +|||||++++++ ..+.|+||.+|+|+++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----G~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----NELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----TEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----CEEEEEcCccceEEECCEe
Confidence 56789999999977 35665 799999998873 6799999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCeeEeeEE--eecCCCCCceEEEEEEeccCC-CHHHHHHHHHHHHHhc
Q 008068 439 NTEKDLQLSVDEAAQLLAEEKQEVVDFTS--HVDLSTDPGHYVIFWEVSGEV-NDEVLKECCNCLDRSF 504 (579)
Q Consensus 439 v~e~~v~~av~~~~~~l~~~g~~l~~f~~--~~~~~~~~~~y~~~vE~~~~~-~~~~l~~~~~~ld~~L 504 (579)
|++.+||+++....+ ++...+..+ ..+. ....-+++++...+. +....+++.+.+.+.|
T Consensus 468 v~p~eIE~~l~~~~~-----~v~~~~~~v~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 468 HYPQDIEFSLMHSPL-----HHVLGKCAAFVIQEE--HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp THHHHHHHHHHHSGG-----GGGEEEEEEEEEEET--TEEEEEEEEEESCTTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCc-----cccCccEEEEEecCC--CCceEEEEEEeccccccchhHHHHHHHHHHHH
Confidence 999999999954322 332212222 2222 123455778775432 2333444444454443
No 16
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.58 E-value=8.2e-14 Score=153.97 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=93.6
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC----cccccceecCCceEEEEEeCC
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP----PELATFAVLPNIGYFEFIPQR 364 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~~----~~~~~~~l~~~~~~~Efip~~ 364 (579)
+++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+.+... ..+ .+..|..+ ++..-+.+++.+
T Consensus 297 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~-~~~~~~~i~d~~ 369 (539)
T 1mdb_A 297 LSSLQ---VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRL-DDPEEIIVNTQGKPM-SPYDESRVWDDH 369 (539)
T ss_dssp CTTCC---EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCT-TSCHHHHHHCCCEES-STTCEEEEECTT
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCC-CCcHHhcCCCCCccc-CCCceEEEECCC
Confidence 46788 6666663 55666777778 58998 999999986554321 111 01123332 222234444432
Q ss_pred CCCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEee
Q 008068 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 427 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR 427 (579)
+. ++++|+.|||+|++ ..||| +|||||+++++. .+.+.|+||
T Consensus 370 ------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR 428 (539)
T 1mdb_A 370 ------------DR-----DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGR 428 (539)
T ss_dssp ------------SC-----BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------CC-----CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEecc
Confidence 22 56789999999976 36666 599999999985 688999999
Q ss_pred eCceEeeceeecCHHHHHHHHHH
Q 008068 428 RNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 428 ~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.+|+|+++|++|++.+||+++.+
T Consensus 429 ~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 429 AKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp GGGCEECSSCEECHHHHHHHHTT
T ss_pred ccceEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999974
No 17
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.58 E-value=2.8e-14 Score=157.96 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=82.0
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHH----hC--CCCeeccccccCcccceecCCCC---CCcccccceecCCceEE
Q 008068 291 LFPNAKYLSGIMTGSM---EHYLKKLRHY----AG--DLPLMSADYGSSEGWIGANVNPS---LPPELATFAVLPNIGYF 358 (579)
Q Consensus 291 lwP~l~~i~~~~~g~~---~~~~~~l~~~----~g--~v~v~~~~YgaSEg~i~~~~~~~---~~~~~~~~~l~~~~~~~ 358 (579)
-+++++ .+.+||. ....+++.+. ++ ++.++ +.||+||+...+...+. ......|..+ .+.-+
T Consensus 294 ~~~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~--~~~~~ 367 (549)
T 3g7s_A 294 DWSYLK---VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGVPM--SDIEL 367 (549)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCEEC--TTCEE
T ss_pred Ccccee---EEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCccccC--CCCEE
Confidence 367788 6677762 5555666655 53 27888 99999997543322111 1111223322 33455
Q ss_pred EEEeCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee------------------ccccCCEEEEeceeC
Q 008068 359 EFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY------------------RYRLGDVVKVMGFHN 417 (579)
Q Consensus 359 Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~------------------RYr~GDvv~v~~~~~ 417 (579)
++++.+ ++. ++.+|+.|||+|++ ..||| +|||||+++++.
T Consensus 368 ~i~d~~-----------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~--- 428 (549)
T 3g7s_A 368 KVISLE-----------DGR-----ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE--- 428 (549)
T ss_dssp EEECSS-----------SCC-----EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT---
T ss_pred EEEeCC-----------CCc-----CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC---
Confidence 666643 123 46789999999976 35665 799999999985
Q ss_pred CCCEEEEEeeeCceEeeceeecCHHHHHHHHHH
Q 008068 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 418 ~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.+.+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 429 -dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 429 -EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp -TSCEEEEEEC------------CHHHHHHHTT
T ss_pred -CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 68999999999999999999999999999875
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.57 E-value=1.2e-13 Score=152.14 Aligned_cols=129 Identities=10% Similarity=0.045 Sum_probs=90.1
Q ss_pred CCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcc-cceecCCC-CCCcccccceecCCceEEEEEeCCCCCc
Q 008068 294 NAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEG-WIGANVNP-SLPPELATFAVLPNIGYFEFIPQRLGNL 368 (579)
Q Consensus 294 ~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSEg-~i~~~~~~-~~~~~~~~~~l~~~~~~~Efip~~~~~~ 368 (579)
+++ .+.+|| ....++++++.+ +++++ +.||+||+ .+.+...+ .+..+..|.. . .+.-+++++.+
T Consensus 301 ~lr---~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p-~-~~~~~~i~d~~---- 369 (529)
T 2v7b_A 301 AIR---ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGRP-V-PGYEIELRDEA---- 369 (529)
T ss_dssp CCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCEE-C-TTCEEEEECTT----
T ss_pred ceE---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCcccC-C-CCCEEEEECCC----
Confidence 677 666666 266677788878 68999 99999997 33332211 1222223332 2 33456666532
Q ss_pred ccccccCCCccccccccCCCceEEEEEcc---cccee-------------ccccCCEEEEeceeCCCCEEEEEeeeCceE
Q 008068 369 ESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFICRRNLLL 432 (579)
Q Consensus 369 ~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i 432 (579)
++ ++++|+.|||+|++ ..||| +|+|||+++++. .+.+.|+||.+|+|
T Consensus 370 --------g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~i 432 (529)
T 2v7b_A 370 --------GH-----AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDML 432 (529)
T ss_dssp --------SC-----BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCB
T ss_pred --------CC-----CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeE
Confidence 23 45789999999987 46777 399999999985 68999999999999
Q ss_pred eeceeecCHHHHHHHHHH
Q 008068 433 TINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 433 ~~~Gekv~e~~v~~av~~ 450 (579)
+++|++|++.+||+++.+
T Consensus 433 k~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 433 KVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp C----CBCHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 999999999999999875
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.56 E-value=1.6e-14 Score=158.17 Aligned_cols=133 Identities=12% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCCCceeeEEeecChHHHHHHHHHHhCCCCeeccccccCcccce-ecCCCCCCcccccceecCCceEEEEEeCCCCCccc
Q 008068 292 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIG-ANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLES 370 (579)
Q Consensus 292 wP~l~~i~~~~~g~~~~~~~~l~~~~g~v~v~~~~YgaSEg~i~-~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~ 370 (579)
.++++ .+.+||.....+++++.+++++++ +.||+||+... ............|..+ .+.-+++++.+
T Consensus 271 l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~d~~------ 338 (509)
T 3ivr_A 271 LASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGRPL--FWRTVAVVDAE------ 338 (509)
T ss_dssp GTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEEC--TTCEEEEECTT------
T ss_pred hhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccccC--CCcEEEEECCC------
Confidence 45677 667777777778888888889999 99999997542 2111111111133332 23345555543
Q ss_pred ccccCCCccccccccCCCceEEEEEcc---ccceec-------------cccCCEEEEeceeCCCCEEEEEeee--CceE
Q 008068 371 QVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFICRR--NLLL 432 (579)
Q Consensus 371 ~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R-------------Yr~GDvv~v~~~~~~~P~i~f~gR~--~d~i 432 (579)
++ ++++|+.|||+|++ ..|||. |+|||+++++. .+.+.|+||. +|++
T Consensus 339 ------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d~i 403 (509)
T 3ivr_A 339 ------DR-----PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKELI 403 (509)
T ss_dssp ------SC-----BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC------
T ss_pred ------CC-----CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcceeE
Confidence 22 56789999999977 477874 99999999985 6889999999 9999
Q ss_pred eeceeecCHHHHHHHHHHH
Q 008068 433 TINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 433 ~~~Gekv~e~~v~~av~~~ 451 (579)
+++|++|++.+||+++.+.
T Consensus 404 k~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 404 KTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp -------------------
T ss_pred EECCEEECHHHHHHHHHhC
Confidence 9999999999999999865
No 20
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.54 E-value=2.4e-13 Score=149.17 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=107.3
Q ss_pred CCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCcccccceecCCceEEEEEeCCCCC
Q 008068 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLGN 367 (579)
Q Consensus 293 P~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~~ 367 (579)
++++ .+.+||. ....+++++.+ +++++ +.||+||+.+.+..... ...+..|.. .+ +.-+++++.+
T Consensus 272 ~~lr---~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~-~~~~~i~d~~--- 341 (505)
T 3nyq_A 272 AGAR---LLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGVP-LP-GVELRLVEED--- 341 (505)
T ss_dssp HHCS---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEE-CT-TCEEEEC------
T ss_pred ccce---EEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCcccC-CC-CCEEEEECCC---
Confidence 3566 5666662 55666777777 68999 99999998654332221 112223332 22 3345555433
Q ss_pred cccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEeee-C
Q 008068 368 LESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR-N 429 (579)
Q Consensus 368 ~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~-~ 429 (579)
+..+. .+..|+.|||+|++ ..||| +|||||+++++. .+.+.|+||. +
T Consensus 342 ---------g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR~~d 406 (505)
T 3nyq_A 342 ---------GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGRKAT 406 (505)
T ss_dssp -----------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEESSC
T ss_pred ---------CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCCccC
Confidence 22221 22348999999976 46776 399999999985 6899999998 5
Q ss_pred ceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeec-CCCCCceEEEEEEeccCCCHHHHHHHHHHHHHhc
Q 008068 430 LLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVD-LSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSF 504 (579)
Q Consensus 430 d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~-~~~~~~~y~~~vE~~~~~~~~~l~~~~~~ld~~L 504 (579)
|+++++|++|.+.+||+++.+. .+ +.+..++.. .......-+.||....+......+++.+.+.+.|
T Consensus 407 ~~ik~~G~~v~~~eIE~~l~~~------p~--V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L 474 (505)
T 3nyq_A 407 DLIKSGGYKIGAGEIENALLEH------PE--VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARL 474 (505)
T ss_dssp CCEEETTEEECHHHHHHHHTTS------TT--EEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHT
T ss_pred ceEEeCCEEECHHHHHHHHHHC------cC--ccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhC
Confidence 9999999999999999998753 23 445554322 1111123345666543212223344445555554
No 21
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.54 E-value=2.4e-13 Score=148.84 Aligned_cols=133 Identities=13% Similarity=0.121 Sum_probs=92.8
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCc
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNL 368 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~ 368 (579)
+++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+.+... ....+..+.. .+ +.-+.+++.+
T Consensus 271 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~g~p-~~-~~~~~i~~~~---- 338 (504)
T 1t5h_X 271 LDSLR---HVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-QPKTGTEMAP-GF-FSEVRIVRIG---- 338 (504)
T ss_dssp CTTCC---EEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-SCSSSSEEBC-CT-TCCEEEECTT----
T ss_pred Ccccc---EEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-CCCCCccccC-CC-CCceeEEecc----
Confidence 46788 6677773 56667788878 47888 999999984333211 1111112221 11 2223444433
Q ss_pred ccccccCCCccccccccCCCceEEEEEc-c---ccceec-------------cccCCEEEEeceeCCCCEEEEEeeeCce
Q 008068 369 ESQVLCIEPKPVGLTEVKVGEEYEIIVT-N---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFICRRNLL 431 (579)
Q Consensus 369 ~~~~~~~~~~~l~~~eve~G~~yeLVvT-t---~~Gl~R-------------Yr~GDvv~v~~~~~~~P~i~f~gR~~d~ 431 (579)
+ ...+ .+++|+.|||+|+ . +.|||. |+|||+++++. .+.+.|+||.+|+
T Consensus 339 ~-----~~~~-----~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ 404 (504)
T 1t5h_X 339 G-----GVDE-----IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDM 404 (504)
T ss_dssp S-----CTTC-----BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGC
T ss_pred C-----CCCC-----cCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCE
Confidence 1 0112 5678999999998 4 367874 99999999985 6789999999999
Q ss_pred EeeceeecCHHHHHHHHHH
Q 008068 432 LTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 432 i~~~Gekv~e~~v~~av~~ 450 (579)
|+++|++|++.+||+++.+
T Consensus 405 ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 405 IISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEETTEEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999974
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.54 E-value=3.9e-13 Score=149.73 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=93.5
Q ss_pred CCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCcccccceecCCceEEEEEeCCCC
Q 008068 292 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 366 (579)
Q Consensus 292 wP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~ 366 (579)
+++|+ .+.+|| ....++++++.+ +++++ +.||+||+.+.+...+. ..++..|..+ + +.-+++++.+
T Consensus 321 ~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-~-~~~v~i~d~~-- 391 (570)
T 3c5e_A 321 FPHLQ---NCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGTAA-S-CYDVQIIDDK-- 391 (570)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEEC-T-TCCEEEECTT--
T ss_pred cccce---EEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccccC-C-CceEEEECCC--
Confidence 46788 556665 356667777778 68998 99999998543322221 1122233322 2 2345555532
Q ss_pred CcccccccCCCccccccccCCCceEEEEEc-----c---cccee-------------ccccCCEEEEeceeCCCCEEEEE
Q 008068 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVT-----N---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFI 425 (579)
Q Consensus 367 ~~~~~~~~~~~~~l~~~eve~G~~yeLVvT-----t---~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~ 425 (579)
+. +|++|+.|||+|+ . +.||| +|+|||+++++. .+.+.|+
T Consensus 392 ----------g~-----~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~ 452 (570)
T 3c5e_A 392 ----------GN-----VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFM 452 (570)
T ss_dssp ----------SC-----BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEE
T ss_pred ----------CC-----CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEE
Confidence 23 4678999999997 3 35676 499999999985 6889999
Q ss_pred eeeCceEeeceeecCHHHHHHHHHH
Q 008068 426 CRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 426 gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
||.+|+|+++|++|++.+||++|.+
T Consensus 453 GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 453 GRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHHT
T ss_pred ecCCCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999975
No 23
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.53 E-value=3e-14 Score=158.05 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=71.5
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecC---CCCCCcccccceecCCceEEEEEeCC
Q 008068 291 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NPSLPPELATFAVLPNIGYFEFIPQR 364 (579)
Q Consensus 291 lwP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~---~~~~~~~~~~~~l~~~~~~~Efip~~ 364 (579)
-.++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+.... .+.......|.. . .+.-...++.+
T Consensus 292 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p-~-~~~~~~i~d~~ 364 (562)
T 3ite_A 292 DAPHLV---YLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIGHP-L-GDSVAHVLAPG 364 (562)
T ss_dssp GSTTCC---EEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEEEE-C-TTCEEEEECTT
T ss_pred ccCceE---EEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCcccccc-C-CCCeEEEEeCC
Confidence 356788 6666663 44555555545 68999 99999997442211 121222112332 1 23344555543
Q ss_pred CCCcccccccCCCccccccccCCCceEEEEEcc---cccee---------------ccccCCEEEEeceeCCCCEEEEEe
Q 008068 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------------RYRLGDVVKVMGFHNSTPELKFIC 426 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~---------------RYr~GDvv~v~~~~~~~P~i~f~g 426 (579)
++. ++++|+.|||+|++ ..||| +|+|||+++++. .+.+.|+|
T Consensus 365 -----------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~G 424 (562)
T 3ite_A 365 -----------SNE-----HVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLG 424 (562)
T ss_dssp -----------SSC-----BCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEE
T ss_pred -----------CCC-----CCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEc
Confidence 112 46789999999976 46776 699999999985 68999999
Q ss_pred eeCceEeeceeecCHHHHHHHHHHH
Q 008068 427 RRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 427 R~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
|.+|+|+++|++|++.|||++|.+.
T Consensus 425 R~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 425 RKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp EC-----------------------
T ss_pred cccCEEeECcEEECHHHHHHHHHhc
Confidence 9999999999999999999999865
No 24
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.53 E-value=3.1e-13 Score=149.71 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=90.7
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhC-----CCCeeccccccCcccceecCCCCCC--------------------
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGWIGANVNPSLP-------------------- 343 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g-----~v~v~~~~YgaSEg~i~~~~~~~~~-------------------- 343 (579)
+++++ .+.+||. ....+++.+.++ +++++ +.||+||+.+.+...+...
T Consensus 298 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (576)
T 3gqw_A 298 LSCWR---VAGIGAEPISAEQLHQFAECFRQVNFDNKTFM-PCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA 373 (576)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE-EEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCC
T ss_pred hhhhH---hhhccCccCCHHHHHHHHHHHhhcCCCccccc-ccCCcccccceeecccccCCccccccchhhhcccCcccc
Confidence 56788 6666762 555666776664 67888 9999999855332211110
Q ss_pred cc----------cccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEcc---ccceec-------
Q 008068 344 PE----------LATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR------- 403 (579)
Q Consensus 344 ~~----------~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R------- 403 (579)
++ ..|.. .+ +.-+++++.+ +. ++.+|+.|||+|++ ..|||.
T Consensus 374 ~~~~~~~~~~~~~~G~p-~~-~~~~~i~d~~------------g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~ 434 (576)
T 3gqw_A 374 PGAETRAVSTFVNCGKA-LP-EHGIEIRNEA------------GM-----PVAERVVGHICISGPSLMSGYFGDQVSQDE 434 (576)
T ss_dssp CCTTCCCEEEEEBCCEE-CT-TCEEEEECTT------------SC-----BCCTTBCEEEEEESTTSCCCBTTCHHHHHH
T ss_pred cCccccCccceeecCCc-CC-CCeEEEECCC------------CC-----CCCCCCeEEEEEeCccccccccCCcccccc
Confidence 00 01221 12 2234444422 23 46789999999977 477874
Q ss_pred ------cccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHH
Q 008068 404 ------YRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 404 ------Yr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
|+|||++++ . .+.+.|+||.+|+|+++|++|++.+||+++.+.
T Consensus 435 ~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 483 (576)
T 3gqw_A 435 IAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQE 483 (576)
T ss_dssp HHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHHHTTS
T ss_pred ccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHHHHhC
Confidence 999999988 3 489999999999999999999999999998764
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.51 E-value=1.1e-13 Score=153.39 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=71.6
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC--CcccccceecCCceEEEEEeCCCC
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL--PPELATFAVLPNIGYFEFIPQRLG 366 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~--~~~~~~~~l~~~~~~~Efip~~~~ 366 (579)
+++|+ .+.+||. ....+++++.+|...++ +.||+||+.+.+...+.. .++..|.. . .+.-+++++++
T Consensus 306 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~-~-~~~~~~i~d~~-- 377 (550)
T 3rix_A 306 LSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKV-V-PFFEAKVVDLD-- 377 (550)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEE-C-TTCEEEEECTT--
T ss_pred ccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccc-c-CCcEEEEEeCC--
Confidence 56888 6677773 66677788888533477 999999985433322221 12222332 2 33455666643
Q ss_pred CcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEeeeC
Q 008068 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRN 429 (579)
Q Consensus 367 ~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~~ 429 (579)
++. ++.+|+.|||+|++ ..||| +|+|||+++++. .+.+.|+||.+
T Consensus 378 ---------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~d 439 (550)
T 3rix_A 378 ---------TGK-----TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIVDRLK 439 (550)
T ss_dssp ---------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC----
T ss_pred ---------CCc-----CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEEecch
Confidence 123 45789999999986 46666 499999999985 68999999999
Q ss_pred ceEeeceeecCHHHHHHHHHHH
Q 008068 430 LLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 430 d~i~~~Gekv~e~~v~~av~~~ 451 (579)
|+|+++|++|++.+||+++.+.
T Consensus 440 d~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 440 SLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp ----------------------
T ss_pred heeEECCEEECHHHHHHHHHhC
Confidence 9999999999999999999864
No 26
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.51 E-value=6.9e-13 Score=150.15 Aligned_cols=227 Identities=11% Similarity=0.055 Sum_probs=128.8
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhC--CCCeeccccccCcccceecC-CCC---CCcccccceecCCceEEEEEe
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGWIGANV-NPS---LPPELATFAVLPNIGYFEFIP 362 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g--~v~v~~~~YgaSEg~i~~~~-~~~---~~~~~~~~~l~~~~~~~Efip 362 (579)
.++|+ .+.+||. ....+.+.+.+| +++++ +.||+||+...+.. .+. ..++..|.. .++ .-+..++
T Consensus 377 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p-~~g-~~v~i~d 450 (652)
T 1pg4_A 377 RSSLR---ILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRP-FFG-VQPALVD 450 (652)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSB-CTT-CCEEEEC
T ss_pred cCceE---EEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCccccC-cCC-CeEEEEC
Confidence 46788 6666663 555666777774 28999 99999997432221 111 111223332 222 2344444
Q ss_pred CCCCCcccccccCCCccccccccCCCceEEEEEcc-----cccee----------------ccccCCEEEEeceeCCCCE
Q 008068 363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN-----VAGLY----------------RYRLGDVVKVMGFHNSTPE 421 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt-----~~Gl~----------------RYr~GDvv~v~~~~~~~P~ 421 (579)
.+ ++ +++.|+.|||+|+. ..||| +|+|||+++++. .+.
T Consensus 451 ~~------------g~-----~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~ 509 (652)
T 1pg4_A 451 NE------------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGY 509 (652)
T ss_dssp TT------------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSC
T ss_pred CC------------CC-----CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCc
Confidence 32 23 45679999999987 24444 499999999985 689
Q ss_pred EEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEee--cCCCCCceEEEEEEeccC--CCHHHHHHHH
Q 008068 422 LKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHV--DLSTDPGHYVIFWEVSGE--VNDEVLKECC 497 (579)
Q Consensus 422 i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~--~~~~~~~~y~~~vE~~~~--~~~~~l~~~~ 497 (579)
+.|+||.+|+|+++|++|.+.|||++|.+. .+ +.+..++. +.. ....-+.||.+..+ .+.+..+++.
T Consensus 510 l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~-~g~~l~a~Vv~~~~~~~~~~~~~~l~ 580 (652)
T 1pg4_A 510 YWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNHGEEPSPELYAEVR 580 (652)
T ss_dssp EEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcCC-CCeEEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999999999999753 23 44554432 211 11234467776543 2323334444
Q ss_pred HHHHHhccChhhHHHhhcCCcCCeEEEEec------cchHH--HHHHHHhcCCCCCCCCCCCcccCCCCHHHHHHHhccc
Q 008068 498 NCLDRSFVDAGYVSARKVNAIGPLELRVVL------KGTFQ--QILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNI 569 (579)
Q Consensus 498 ~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~------~gtf~--~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~~ 569 (579)
+.+.+.| +.|. .|-.|.+|+ .|-.. ++++.. .+. ..+++.+--+. |++.++.+.+.+
T Consensus 581 ~~l~~~l--~~~~--------~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~--~p~~~~~~~~~~ 645 (652)
T 1pg4_A 581 NWVRKEI--GPLA--------TPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLA--DPGVVEKLLEEK 645 (652)
T ss_dssp HHHHHHT--CGGG--------CCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------C--CTTHHHHHHHHH
T ss_pred HHHHHhC--CCCc--------CCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccC--CHHHHHHHHHHh
Confidence 4455443 2232 355555554 23322 222221 221 12556666777 888888886643
No 27
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.51 E-value=2.4e-13 Score=151.18 Aligned_cols=132 Identities=12% Similarity=0.195 Sum_probs=87.3
Q ss_pred CCCCceeeEEeecChHHHHHHHHHHhCCCCeeccccccCcccce-ec-C-CCCC--CcccccceecCCceEEEEEeCCCC
Q 008068 292 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIG-AN-V-NPSL--PPELATFAVLPNIGYFEFIPQRLG 366 (579)
Q Consensus 292 wP~l~~i~~~~~g~~~~~~~~l~~~~g~v~v~~~~YgaSEg~i~-~~-~-~~~~--~~~~~~~~l~~~~~~~Efip~~~~ 366 (579)
.++++ .+.+||.....+.++.+...++++ +.||+||+.+. .. . .... .....|..+ + +.-+.+++.+
T Consensus 292 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~-~-~~~v~i~d~~-- 363 (563)
T 1amu_A 292 ILSIQ---TLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPI-Q-NTQIYIVDEN-- 363 (563)
T ss_dssp CCSCS---EEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEEC-T-TEEEEEECTT--
T ss_pred ccccc---EEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCccccee-C-CCEEEEECCC--
Confidence 35688 666666422222233333347888 99999997432 21 1 1111 111133332 2 2334444432
Q ss_pred CcccccccCCCccccccccCCCceEEEEEcc---cccee--------------------ccccCCEEEEeceeCCCCEEE
Q 008068 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------------RYRLGDVVKVMGFHNSTPELK 423 (579)
Q Consensus 367 ~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------------RYr~GDvv~v~~~~~~~P~i~ 423 (579)
+. ++..|+.|||+|++ +.||| ||+|||+++++. .+.+.
T Consensus 364 ----------~~-----~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~ 424 (563)
T 1amu_A 364 ----------LQ-----LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIE 424 (563)
T ss_dssp ----------SC-----BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEE
T ss_pred ----------cC-----CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEE
Confidence 23 45789999999977 35665 799999999985 68899
Q ss_pred EEeeeCceEeeceeecCHHHHHHHHHH
Q 008068 424 FICRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 424 f~gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
|+||.+|+|+++|++|++.+||+++.+
T Consensus 425 i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 425 YLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp EEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred EeccccCEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999999999875
No 28
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.50 E-value=2.6e-13 Score=149.12 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=87.9
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceec-CCC---CCCcccccceecCCceEEEEEeCC
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN-VNP---SLPPELATFAVLPNIGYFEFIPQR 364 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~-~~~---~~~~~~~~~~l~~~~~~~Efip~~ 364 (579)
.|+|+ .+.+||. ....+++++. +++++ +.||+||+..... ... ....+..|..+ .+.-+++++.+
T Consensus 283 ~~~lr---~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~ 354 (517)
T 3r44_A 283 APDFR---YFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGRAT--MFTDVAVRGDD 354 (517)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBEEC--TTEEEEEECTT
T ss_pred CCccc---EEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCcCC--CCeEEEEECCC
Confidence 46788 6777773 4455555543 68999 9999999743221 111 11122223321 22233333322
Q ss_pred CCCcccccccCCCccccccccCCCceEEEEEcc---cccee-------------ccccCCEEEEeceeCCCCEEEEEeee
Q 008068 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFICRR 428 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~gR~ 428 (579)
+. .++.| .|||+|++ ..||| +|||||+++++. .+.+.|+||.
T Consensus 355 ------------~~-----~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~ 412 (517)
T 3r44_A 355 ------------GV-----IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRL 412 (517)
T ss_dssp ------------SC-----EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECG
T ss_pred ------------CC-----CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCC
Confidence 22 34567 89999987 47777 399999999985 6899999999
Q ss_pred CceEeeceeecCHHHHHHHHHH
Q 008068 429 NLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 429 ~d~i~~~Gekv~e~~v~~av~~ 450 (579)
+|+|+++|++|++.+||+++.+
T Consensus 413 dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 413 KDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp GGCEEETTEEECHHHHHHHHTT
T ss_pred cCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999875
No 29
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.49 E-value=7.9e-14 Score=154.27 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=74.3
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC---cccccceecCCceEEEEEeCCC
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQRL 365 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~~---~~~~~~~l~~~~~~~Efip~~~ 365 (579)
.++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+......... ....|..+. .+.-++.++.+
T Consensus 306 ~~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~-~~~~~~i~d~~- 378 (544)
T 3o83_A 306 IQSLK---LLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS-SDDEIKIVDEQ- 378 (544)
T ss_dssp HTTCC---EEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESC-TTCEEEEECTT-
T ss_pred CCcce---EEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecC-CCcEEEEECCC-
Confidence 45788 5666662 56667787778 68999 9999999865433211110 011233322 23345555432
Q ss_pred CCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEeee
Q 008068 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR 428 (579)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~ 428 (579)
++ ++++|+.|||+|++ ..||| +|||||+++++. .+.+.|+||.
T Consensus 379 -----------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~ 438 (544)
T 3o83_A 379 -----------YR-----EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVVGRI 438 (544)
T ss_dssp -----------SC-----BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEEEEE
T ss_pred -----------CC-----CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEEeec
Confidence 23 46789999999977 35666 499999999985 6899999999
Q ss_pred CceEeeceeecCHHHHHHHHHHH
Q 008068 429 NLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 429 ~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
+|+|+++|++|++.+||+++.+.
T Consensus 439 dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 439 KDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp C----------------------
T ss_pred CCEEEeCCEEECHHHHHHHHHhC
Confidence 99999999999999999999865
No 30
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.48 E-value=1.3e-12 Score=146.68 Aligned_cols=133 Identities=12% Similarity=0.128 Sum_probs=93.8
Q ss_pred cCCCCceeeEEeecC---hHHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC---cccccceecCCceEEEEEeCC
Q 008068 291 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQR 364 (579)
Q Consensus 291 lwP~l~~i~~~~~g~---~~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~~---~~~~~~~l~~~~~~~Efip~~ 364 (579)
-.++|+ .+.+|| .....+++.+.+ +++++ +.||+||+.+......... ....|..+.+ +..+..++.+
T Consensus 300 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~ 373 (617)
T 3rg2_A 300 QLASLK---LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP-DDEVWVADAE 373 (617)
T ss_dssp TTTTCC---EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT
T ss_pred cCCCcc---EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCC-CceEEEECCC
Confidence 456788 666666 256667777777 68999 9999999865433211110 0012232222 2234444432
Q ss_pred CCCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEEEee
Q 008068 365 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 427 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR 427 (579)
++ .+..|+.|||+|+. ..||| +|||||+++.+. .+.+.|+||
T Consensus 374 ------------~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~~GR 432 (617)
T 3rg2_A 374 ------------GN-----PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITVQGR 432 (617)
T ss_dssp ------------SC-----BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------CC-----CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEEEee
Confidence 23 46789999999976 36776 399999999985 689999999
Q ss_pred eCceEeeceeecCHHHHHHHHHH
Q 008068 428 RNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 428 ~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.+|+++++|++|.+.+||++|.+
T Consensus 433 ~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 433 EKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp CSSEEEETTEEEEHHHHHHHHTT
T ss_pred cCCEEEECCEEeCHHHHHHHHHh
Confidence 99999999999999999999875
No 31
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.48 E-value=8.1e-13 Score=149.95 Aligned_cols=229 Identities=11% Similarity=0.103 Sum_probs=124.9
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhC--CCCeeccccccCcccc--eecCC-C--CCCcccccceecCCceEEEEE
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGWI--GANVN-P--SLPPELATFAVLPNIGYFEFI 361 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g--~v~v~~~~YgaSEg~i--~~~~~-~--~~~~~~~~~~l~~~~~~~Efi 361 (579)
.++|+ .+.+||. ....+.+.+.+| +++++ +.||+||+.. ..+.. . ...++..|..+ + +.-++.+
T Consensus 383 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~-~-g~~v~i~ 456 (663)
T 1ry2_A 383 LKSLR---CLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFPF-F-GIDAVVL 456 (663)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEEC-T-TCCEEEE
T ss_pred cCceE---EEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccCc-C-CCeEEEE
Confidence 46788 6777773 555566777674 38999 9999999743 22211 0 11122233322 2 2334555
Q ss_pred eCCCCCcccccccCCCccccccccCC-CceEEEEEccc-----ccee----------------ccccCCEEEEeceeCCC
Q 008068 362 PQRLGNLESQVLCIEPKPVGLTEVKV-GEEYEIIVTNV-----AGLY----------------RYRLGDVVKVMGFHNST 419 (579)
Q Consensus 362 p~~~~~~~~~~~~~~~~~l~~~eve~-G~~yeLVvTt~-----~Gl~----------------RYr~GDvv~v~~~~~~~ 419 (579)
+.+ +++ ++.. |+.|||+|+.. .||| +|+|||+++++. .
T Consensus 457 d~~-----------~g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----d 516 (663)
T 1ry2_A 457 DPN-----------TGE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----D 516 (663)
T ss_dssp CSS-----------STT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----T
T ss_pred cCC-----------CCC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----C
Confidence 542 123 3455 89999999872 4554 499999999985 6
Q ss_pred CEEEEEeeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCC-CCceEEEEEEeccCCC-----H---
Q 008068 420 PELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLST-DPGHYVIFWEVSGEVN-----D--- 490 (579)
Q Consensus 420 P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~-~~~~y~~~vE~~~~~~-----~--- 490 (579)
+.+.|+||.+|+|+++|++|.+.+||++|.+. .+ |.+..++..... ....-+.||.+..+.. .
T Consensus 517 G~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~ 588 (663)
T 1ry2_A 517 GYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 588 (663)
T ss_dssp CCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC------------C
T ss_pred CCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhH
Confidence 88999999999999999999999999999742 22 445555432111 1112345666643311 1
Q ss_pred -HHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEecc------chHHHHHHHHhcCCCCCCCCCCCcccCCCCHHHHH
Q 008068 491 -EVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLK------GTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQ 563 (579)
Q Consensus 491 -~~l~~~~~~ld~~L~n~~Y~~~R~~~~l~p~~v~~v~~------gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~ 563 (579)
+..+++.+.+.+.| + ....|-+|.+|+. |-..+-.=..+..+. ..+++.+-.+. |++.++
T Consensus 589 ~~l~~~l~~~l~~~L--~--------~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~~~~~l~--~p~~~~ 655 (663)
T 1ry2_A 589 QDIKKHLVFTVRKDI--G--------PFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE-SDQLGDVSTLS--NPGIVR 655 (663)
T ss_dssp CSHHHHHHHHHHHHT--C--------TTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC----------------CCHHHH
T ss_pred HHHHHHHHHHHHHhC--C--------CCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC-CCCCCCccccc--CHHHHH
Confidence 12233333333332 1 1234666666642 332221111112232 12667778888 899998
Q ss_pred HHhc
Q 008068 564 ILCN 567 (579)
Q Consensus 564 ~l~~ 567 (579)
.+.+
T Consensus 656 ~~~~ 659 (663)
T 1ry2_A 656 HLID 659 (663)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 32
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.48 E-value=5.2e-14 Score=156.61 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=70.4
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceec---CCCC---CCcccccceecCCceEEEEEe
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS---LPPELATFAVLPNIGYFEFIP 362 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~---~~~~---~~~~~~~~~l~~~~~~~Efip 362 (579)
+++|+ .+.+||. .....++.+.+++++++ +.||+||+..... .... ......|..+ .+.-+.+++
T Consensus 325 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~--~~~~v~i~d 398 (570)
T 4gr5_A 325 FEGVR---YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPL--AGKRAYVLD 398 (570)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEEC--TTEEEEEEC
T ss_pred CCCce---EEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccceee--CCCEEEEEC
Confidence 56788 6666763 45566677777789999 9999999743211 1100 0011123322 233344444
Q ss_pred CCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee----------------------ccccCCEEEEeceeC
Q 008068 363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY----------------------RYRLGDVVKVMGFHN 417 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~----------------------RYr~GDvv~v~~~~~ 417 (579)
.+ ++ ++..|+.|||+|++ ..||| +|||||+++++.
T Consensus 399 ~~------------~~-----~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~--- 458 (570)
T 4gr5_A 399 DD------------LK-----PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA--- 458 (570)
T ss_dssp TT------------SC-----BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT---
T ss_pred CC------------CC-----CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC---
Confidence 22 23 56789999999976 46665 499999999985
Q ss_pred CCCEEEEEeeeCceEeeceeecCHHHHHHHHHHH
Q 008068 418 STPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 418 ~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
.+.+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 459 -dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 459 -DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp -TSCEEEEEC------------------------
T ss_pred -CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 689999999999999999999999999999864
No 33
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.48 E-value=1.9e-12 Score=141.41 Aligned_cols=123 Identities=13% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccce-ecCCCC---CCcccccceecCCceEEEEEeCCCC
Q 008068 294 NAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIG-ANVNPS---LPPELATFAVLPNIGYFEFIPQRLG 366 (579)
Q Consensus 294 ~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~-~~~~~~---~~~~~~~~~l~~~~~~~Efip~~~~ 366 (579)
+|+ .+.+||. ....+++++ + +++++ +.||+||+... +...+. ..++..|..+ + +.-+++++.
T Consensus 275 ~lr---~i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~-~-~~~~~i~d~--- 343 (501)
T 3ipl_A 275 NLQ---KILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEMLHARPDTVGMPS-A-NVDVKIKNP--- 343 (501)
T ss_dssp TCC---EEEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHHHHCTTCCBEEC-T-TCEEEEESC---
T ss_pred ccc---EEEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCccccccCCCCCCCCC-C-CcEEEEecC---
Confidence 688 6666663 445555555 4 68999 99999996432 221111 0111122221 1 222333221
Q ss_pred CcccccccCCCccccccccCCCceEEEEEcc---ccceec------------cccCCEEEEeceeCCCCEEEEEeeeCce
Q 008068 367 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR------------YRLGDVVKVMGFHNSTPELKFICRRNLL 431 (579)
Q Consensus 367 ~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~R------------Yr~GDvv~v~~~~~~~P~i~f~gR~~d~ 431 (579)
..|+.|||+|++ ..|||. |+|||+++++. .+.+.|+||.+|+
T Consensus 344 -------------------~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 344 -------------------NKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDL 400 (501)
T ss_dssp -------------------CSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCC
T ss_pred -------------------CCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccce
Confidence 146789999976 467774 99999999985 6899999999999
Q ss_pred EeeceeecCHHHHHHHHHH
Q 008068 432 LTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 432 i~~~Gekv~e~~v~~av~~ 450 (579)
|+++|++|++.+||+++.+
T Consensus 401 ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 401 IISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp EECSSCEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999998875
No 34
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.42 E-value=1.4e-12 Score=154.23 Aligned_cols=134 Identities=12% Similarity=0.116 Sum_probs=76.7
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCC------CC-CCcccccceecCCceEEEEE
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVN------PS-LPPELATFAVLPNIGYFEFI 361 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~------~~-~~~~~~~~~l~~~~~~~Efi 361 (579)
.++|+ .+.+||. ....+++++.+++++++ +.||+||+...+... +. ...+..|.. . .+.-++++
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p-~-~~~~~~i~ 416 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTV-V-RNAEMKIV 416 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEE-C-SSCEEEEE
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCcc-c-CCcEEEEE
Confidence 46788 6777773 55667788888889999 999999975322111 10 111112332 2 23345666
Q ss_pred eCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------ccccCCEEEEeceeCCCCEEEE
Q 008068 362 PQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKF 424 (579)
Q Consensus 362 p~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f 424 (579)
+++ ++. +|.+|+.|||+|+. ..||| +|||||+++++. ...+.|
T Consensus 417 d~~-----------~~~-----~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~ 476 (979)
T 3tsy_A 417 DPD-----------TGD-----SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDELFI 476 (979)
T ss_dssp CTT-----------SCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEE
T ss_pred eCC-----------CCC-----CCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceEEE
Confidence 543 123 45789999999986 46776 499999999985 689999
Q ss_pred EeeeCceEeeceeecCHHHHHHHHHHH
Q 008068 425 ICRRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 425 ~gR~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
+||.+|+|+++|++|.+.+||++|.+.
T Consensus 477 ~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 477 VDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEESCC---------------------
T ss_pred ecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999864
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.42 E-value=7.8e-13 Score=148.95 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=91.0
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceec---CCCC---CCcccccceecCCceEEEEEe
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS---LPPELATFAVLPNIGYFEFIP 362 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~---~~~~---~~~~~~~~~l~~~~~~~Efip 362 (579)
.++|+ .+.+||. ....+++.+.+++++++ +.||+||+.+... .... ......|..+ .+.-+.+++
T Consensus 275 l~~lr---~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~--~~~~~~i~d 348 (620)
T 4dg8_A 275 LGGLR---QLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAI--AGTAVLLLD 348 (620)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEEC--TTEEEEEEC
T ss_pred CCCcc---EEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceecc--cCcEEEEEC
Confidence 46788 6677763 34455555566689999 9999999754221 1111 0111123322 233445554
Q ss_pred CCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee---------------------ccccCCEEEEeceeCC
Q 008068 363 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------------------RYRLGDVVKVMGFHNS 418 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~---------------------RYr~GDvv~v~~~~~~ 418 (579)
.+ +.. .+++|+.|||+|.. ..||| +|||||+++.+.
T Consensus 349 ~~------------~~~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~---- 408 (620)
T 4dg8_A 349 EH------------GQE----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE---- 408 (620)
T ss_dssp TT------------SCB----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----
T ss_pred cc------------CCC----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----
Confidence 43 121 14679999999965 35654 499999999985
Q ss_pred CCEEEEEeeeCceEeeceeecCHHHHHHHHHH
Q 008068 419 TPELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 419 ~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.+.+.|+||.+|+++++|++|.+.|||+++.+
T Consensus 409 dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp TSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 68999999999999999999999999999985
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.41 E-value=1.6e-12 Score=136.51 Aligned_cols=124 Identities=14% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCCcccccceecCCceEEEEEeCCCCCc
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNL 368 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~ 368 (579)
.++|+ .+.+||. ....+++++ + +++++ +.||+||+...+...+...+. . .... ++..
T Consensus 147 l~~lr---~v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~-~------g~~~---~~~p---- 206 (358)
T 4gs5_A 147 VDRLG---KVLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPE-A------SELY---VFLP---- 206 (358)
T ss_dssp GGGGC---SEEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTT-C------CSCE---EECT----
T ss_pred CCcce---EEEEcccCCCchheecccc-c-CceEE-eccccccccceeecccccccc-c------ceee---ccCC----
Confidence 45677 5666763 444455554 4 68999 999999975443322211110 0 1111 1221
Q ss_pred ccccccCCCccccccccCCCceEEEEEccc-cceeccccCCEEEEeceeCCCCEEEEEeeeCceEeeceeecCHHHHHHH
Q 008068 369 ESQVLCIEPKPVGLTEVKVGEEYEIIVTNV-AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLS 447 (579)
Q Consensus 369 ~~~~~~~~~~~l~~~eve~G~~yeLVvTt~-~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~a 447 (579)
-.++..++.+||++... ..-.+|||||+++++. . .+.|+||.+|+|+++|++|++.+||++
T Consensus 207 -------------gv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~----~-g~~~~GR~dd~Ik~~G~~v~p~eIE~~ 268 (358)
T 4gs5_A 207 -------------GIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHG----N-AFQWIGRADNVINSGGVKIVLDQIDQR 268 (358)
T ss_dssp -------------TCEEEECTTSEEEEESGGGTTCCEEEEEEEEECS----S-EEEEEEEGGGEEEETTEEEEHHHHHHH
T ss_pred -------------CeEEEecCcCceEEecccccCcceecCCcccccc----C-ceEEcccccCeEEECCEEECHHHHHHH
Confidence 01344567789998753 2223699999999985 2 378999999999999999999999999
Q ss_pred HHHHHH
Q 008068 448 VDEAAQ 453 (579)
Q Consensus 448 v~~~~~ 453 (579)
|.....
T Consensus 269 l~~~~~ 274 (358)
T 4gs5_A 269 IAAVFH 274 (358)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 876543
No 37
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.37 E-value=1.8e-11 Score=148.90 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=90.7
Q ss_pred CCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecC---CC--C-CCcccccceecCCceEEEEEeC
Q 008068 293 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NP--S-LPPELATFAVLPNIGYFEFIPQ 363 (579)
Q Consensus 293 P~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~---~~--~-~~~~~~~~~l~~~~~~~Efip~ 363 (579)
++|+ +++.||- ....+++.+.++++.++ +.||.||+.+.... .. . ......|.. .++. -+..++.
T Consensus 720 ~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~-~~~i~d~ 793 (1304)
T 2vsq_A 720 KGLR---CILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKP-ISNA-SVYILNE 793 (1304)
T ss_dssp HTCS---EEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEE-CTTE-EEEEECT
T ss_pred CCcc---EEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCcee-eCCC-EEEEECC
Confidence 5688 6666762 45556676777778899 99999998542211 11 0 001112332 2332 2333332
Q ss_pred CCCCcccccccCCCccccccccCCCceEEEEEcc---cccee--------------------ccccCCEEEEeceeCCCC
Q 008068 364 RLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------------RYRLGDVVKVMGFHNSTP 420 (579)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~--------------------RYr~GDvv~v~~~~~~~P 420 (579)
+ .+ .++.|+.|||+|.. ..||| +|||||+++... .+
T Consensus 794 ~------------~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG 852 (1304)
T 2vsq_A 794 Q------------SQ-----LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DG 852 (1304)
T ss_dssp T------------SC-----BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TS
T ss_pred C------------cC-----CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CC
Confidence 2 23 45789999999976 35554 699999999985 68
Q ss_pred EEEEEeeeCceEeeceeecCHHHHHHHHHH
Q 008068 421 ELKFICRRNLLLTINIDKNTEKDLQLSVDE 450 (579)
Q Consensus 421 ~i~f~gR~~d~i~~~Gekv~e~~v~~av~~ 450 (579)
.++|+||.+++++++|++|...|||.++.+
T Consensus 853 ~l~~~GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 853 TIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp CEEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred eEEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence 999999999999999999999999999975
No 38
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.37 E-value=3.5e-12 Score=140.97 Aligned_cols=131 Identities=13% Similarity=0.134 Sum_probs=86.3
Q ss_pred CCCCceeeEEeecCh---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC-------------CcccccceecCCc
Q 008068 292 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL-------------PPELATFAVLPNI 355 (579)
Q Consensus 292 wP~l~~i~~~~~g~~---~~~~~~l~~~~g~v~v~~~~YgaSEg~i~~~~~~~~-------------~~~~~~~~l~~~~ 355 (579)
.++|+ .+.+||. ....+++ +.+ +++++ +.||+||+...+...... .....|..+ + +
T Consensus 292 l~~lr---~i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~-~ 363 (541)
T 1v25_A 292 LKTLR---RLVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI-P-L 363 (541)
T ss_dssp CSSCC---EEEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEEC-T-T
T ss_pred chhcc---EEEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCCcC-C-C
Confidence 35788 6677763 5555666 446 68999 999999975432211110 001123322 2 2
Q ss_pred eEEEEEeCCCCCcccccccCCCccccccccCC--CceEEEEEcc---cccee--------------ccccCCEEEEecee
Q 008068 356 GYFEFIPQRLGNLESQVLCIEPKPVGLTEVKV--GEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFH 416 (579)
Q Consensus 356 ~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~--G~~yeLVvTt---~~Gl~--------------RYr~GDvv~v~~~~ 416 (579)
.-+++++.+ ++ ++.. |+.|||+|++ ..||| +|||||+++++.
T Consensus 364 ~~~~i~d~~------------g~-----~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~-- 424 (541)
T 1v25_A 364 VRLRVADEE------------GR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE-- 424 (541)
T ss_dssp CEEEEECTT------------SC-----BCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT--
T ss_pred cEEEEECCC------------CC-----CCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC--
Confidence 334555432 22 2332 3689999976 46777 499999999985
Q ss_pred CCCCEEEEEeeeCceEeeceeecCHHHHHHHHHHH
Q 008068 417 NSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 451 (579)
Q Consensus 417 ~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~av~~~ 451 (579)
.+.+.|+||.+|+|+++|++|++.+||+++.+.
T Consensus 425 --dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 425 --EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp --TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred --CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 679999999999999999999999999999864
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.83 E-value=1.3e-08 Score=109.87 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=67.7
Q ss_pred cCCCCceeeEEeecCh---HHHHHHHHHHhC-----CCCeeccccccCcccceecCC-CCCCc-----------------
Q 008068 291 LFPNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGWIGANVN-PSLPP----------------- 344 (579)
Q Consensus 291 lwP~l~~i~~~~~g~~---~~~~~~l~~~~g-----~v~v~~~~YgaSEg~i~~~~~-~~~~~----------------- 344 (579)
-.++|+ .+.+||. ....+++++.++ ++.++ +.||+||+.+.+... +..+.
T Consensus 309 ~l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 384 (480)
T 3t5a_A 309 DLGNIL---TILSGSERVQAATIKRFADRFARFNLQERVIR-PSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKP 384 (480)
T ss_dssp CCTTCC---EEEECCTTCCHHHHHHHHHHSGGGTCCGGGEE-EEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCC
T ss_pred chhhhh---eeeecCCcCCHHHHHHHHHHHhhcCCChhhcc-ccccccccceeEeecccCCCcceEEecHHHhccCceee
Confidence 356788 6777773 556667777763 35688 999999985533221 11110
Q ss_pred ---------ccccceecCCceEEEEEeCCCCCcccccccCCCccccccccCCCceEEEEEcc---cccee----------
Q 008068 345 ---------ELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------- 402 (579)
Q Consensus 345 ---------~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yeLVvTt---~~Gl~---------- 402 (579)
...|..+ + .-+.+++.+ +++ ++++|+.|||+|.+ ..|||
T Consensus 385 ~~~~~~~~~~~~G~p~-~--~~~~ivd~~-----------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f 445 (480)
T 3t5a_A 385 CAGGGATSLISYMLPR-S--PIVRIVDSD-----------TCI-----ECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445 (480)
T ss_dssp CCSSSCEEEECEECCS-S--SEEEEEETT-----------TTE-----ECCTTBCEEEEEESTTSCCCBTTBHHHHHHHH
T ss_pred cCCCCcceeeecCccc-C--CEEEEEcCC-----------CCc-----CCCCCCEEEEEEeCCccccccccCcchhHHHH
Confidence 0011111 1 123344432 122 56789999999976 46776
Q ss_pred ---------------ccccCCEEEEeceeCCCCEEEEEee
Q 008068 403 ---------------RYRLGDVVKVMGFHNSTPELKFICR 427 (579)
Q Consensus 403 ---------------RYr~GDvv~v~~~~~~~P~i~f~gR 427 (579)
+|||||+++++ ...+.|+||
T Consensus 446 ~~~~~~~~~~~~~~~w~~TGDlg~~d-----dG~l~~~GR 480 (480)
T 3t5a_A 446 GGKIVTPSPGTPEGPWLRTGDSGFVT-----DGKMFIIGR 480 (480)
T ss_dssp CBCCSSCCTTCCCCCBEEEEEEEEEE-----TTEEEECC-
T ss_pred hhhhccccCCCCCCCeeeccceeeEE-----CCEEEEeCC
Confidence 79999999884 489999998
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.59 E-value=0.00017 Score=61.94 Aligned_cols=90 Identities=9% Similarity=0.104 Sum_probs=56.7
Q ss_pred eeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccC--CCHHHHHHHHHHHHHhc
Q 008068 427 RRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGE--VNDEVLKECCNCLDRSF 504 (579)
Q Consensus 427 R~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~--~~~~~l~~~~~~ld~~L 504 (579)
|.||||+++|.|+++.+||++|.+. .++. ..+.+..+.........+++|.... .+...++.+++.+.+.+
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHH
Confidence 8999999999999999999998753 2321 1233333221111234577777543 34455666666666654
Q ss_pred cChhhHHHhhcCCcCCeEEEEeccchHH
Q 008068 505 VDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (579)
Q Consensus 505 ~n~~Y~~~R~~~~l~p~~v~~v~~gtf~ 532 (579)
+...| + ++.|.+|++|++.
T Consensus 75 -------~~~~g-v-~~~v~~v~~~~lP 93 (109)
T 3lax_A 75 -------KDEIL-V-TPRVKLVPKGALP 93 (109)
T ss_dssp -------HHHHS-S-CCEEEEECTTCSC
T ss_pred -------HHHhC-C-ccceEEEcCCeec
Confidence 11223 3 5689999999987
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.42 E-value=0.00038 Score=59.94 Aligned_cols=90 Identities=8% Similarity=0.132 Sum_probs=56.3
Q ss_pred eeeCceEeeceeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCC---CHHHHHHHHHHHHH
Q 008068 426 CRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEV---NDEVLKECCNCLDR 502 (579)
Q Consensus 426 gR~~d~i~~~Gekv~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~~---~~~~l~~~~~~ld~ 502 (579)
||.+|||+++|.++++.+||+++.+. + ++. ..|.+..+.....-..++++|+ .+. +....+++.+.+.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~ 72 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITR 72 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHH
Confidence 79999999999999999999999863 2 221 1455433221111245688998 332 12344455555555
Q ss_pred hccChhhHHHhhcCCcCCeEEEEeccchHH
Q 008068 503 SFVDAGYVSARKVNAIGPLELRVVLKGTFQ 532 (579)
Q Consensus 503 ~L~n~~Y~~~R~~~~l~p~~v~~v~~gtf~ 532 (579)
.+ +...| +. ++|.+|++|++.
T Consensus 73 ~l-------~~~~~-~~-~~v~~v~~~~lP 93 (109)
T 3gxs_A 73 QL-------KDEIL-VT-PRVKLVPKGALP 93 (109)
T ss_dssp HH-------HHHHS-SC-CEEEEECTTCSC
T ss_pred HH-------HHhhC-Cc-eEEEEECCCCcc
Confidence 54 11223 44 499999999866
No 42
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=23.18 E-value=3.1e+02 Score=26.95 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCCCHHHHHHHHHHHH
Q 008068 441 EKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLD 501 (579)
Q Consensus 441 e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~~~~~~l~~~~~~ld 501 (579)
+..+.+++..+. ..|+.+.-.-..+- ...++.|.+|||+.+..+.+..+...+.|.
T Consensus 211 pGaL~~~L~~Fa----~~gINLtkIESRP~-~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 211 QGSLFRALATFA----LRGIDLTKIESRPS-RKKAFEYLFYADFIGHREDQNVHNALENLR 266 (283)
T ss_dssp TTHHHHHHHHHH----TTTCCEEEEEEEEC-SSSTTEEEEEEEEESCTTSHHHHHHHHHHH
T ss_pred CchHHHHHHHHH----HcCCCeeEEEeeEc-CCCCcceEEEEEEecCCCcHHHHHHHHHHH
Confidence 556777777664 47887776666654 335689999999976655444444444444
No 43
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=20.17 E-value=4.1e+02 Score=22.70 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccC
Q 008068 440 TEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGE 487 (579)
Q Consensus 440 ~e~~v~~av~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~ 487 (579)
....+.+++.+++. ..++.+.+|.+.+| |..++|++...
T Consensus 42 ~~~~l~~~l~~~~~---~~~~~i~a~~vmpD------HvHlLv~~~p~ 80 (143)
T 2fyx_A 42 VADGLKDILRDIAT---QNGLELVALEVMPD------YVHLLLGATPQ 80 (143)
T ss_dssp HHHHHHHHHHHHHH---HTTCEEEEEEECSS------EEEEEEEECTT
T ss_pred HHHHHHHHHHHHHh---hcCeEEEEEEecCC------eEEEEEecCCC
Confidence 45567777777766 57999999997644 99999998543
Done!