Query 008069
Match_columns 579
No_of_seqs 428 out of 2405
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 19:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02730 carot_isom carotene 100.0 2.4E-50 5.1E-55 440.4 46.5 420 158-579 1-420 (493)
2 TIGR02733 desat_CrtD C-3',4' d 100.0 6.3E-43 1.4E-47 382.3 45.2 405 158-579 2-420 (492)
3 TIGR02734 crtI_fam phytoene de 100.0 3.5E-43 7.5E-48 385.3 42.6 403 160-579 1-419 (502)
4 KOG4254 Phytoene desaturase [C 100.0 2.9E-43 6.3E-48 353.6 27.1 413 155-579 12-471 (561)
5 COG1233 Phytoene dehydrogenase 100.0 9E-40 2E-44 354.7 31.3 395 157-579 3-410 (487)
6 PRK07233 hypothetical protein; 100.0 1.6E-26 3.5E-31 248.9 36.0 355 159-572 1-362 (434)
7 TIGR00562 proto_IX_ox protopor 99.9 1.3E-25 2.7E-30 244.1 31.4 355 157-572 2-391 (462)
8 PLN02612 phytoene desaturase 99.9 1.5E-24 3.2E-29 239.6 39.5 368 156-570 92-472 (567)
9 PRK11883 protoporphyrinogen ox 99.9 2.2E-25 4.7E-30 241.4 32.2 355 158-567 1-380 (451)
10 COG1232 HemY Protoporphyrinoge 99.9 1.2E-25 2.6E-30 236.1 27.5 353 158-574 1-380 (444)
11 PRK12416 protoporphyrinogen ox 99.9 3E-24 6.4E-29 233.3 34.9 356 158-568 2-389 (463)
12 PRK07208 hypothetical protein; 99.9 4.4E-24 9.5E-29 233.0 32.5 350 156-567 3-386 (479)
13 PLN02487 zeta-carotene desatur 99.9 1E-23 2.2E-28 230.6 34.2 407 131-573 46-485 (569)
14 COG0493 GltD NADPH-dependent g 99.9 2.5E-27 5.5E-32 251.4 5.2 181 37-237 5-191 (457)
15 PLN02576 protoporphyrinogen ox 99.9 2.8E-23 6E-28 227.7 32.5 354 156-568 11-412 (496)
16 TIGR02732 zeta_caro_desat caro 99.9 6.1E-23 1.3E-27 222.6 32.0 382 159-573 1-409 (474)
17 TIGR02731 phytoene_desat phyto 99.9 3.7E-22 8.1E-27 216.3 36.0 359 159-569 1-380 (453)
18 PRK12779 putative bifunctional 99.9 2.9E-25 6.4E-30 255.8 3.2 175 42-237 171-374 (944)
19 PRK12809 putative oxidoreducta 99.9 3.5E-25 7.7E-30 248.3 3.6 178 41-237 194-378 (639)
20 PRK12769 putative oxidoreducta 99.9 6.3E-25 1.4E-29 247.3 3.9 178 40-236 210-394 (654)
21 PLN02268 probable polyamine ox 99.9 1.3E-20 2.7E-25 203.3 33.7 347 158-572 1-360 (435)
22 PRK12831 putative oxidoreducta 99.9 4.6E-24 1E-28 230.6 4.9 178 40-236 25-208 (464)
23 TIGR01318 gltD_gamma_fam gluta 99.9 1.2E-23 2.6E-28 227.7 4.1 179 39-236 24-208 (467)
24 PRK12775 putative trifunctiona 99.9 1.1E-23 2.5E-28 244.7 3.7 177 40-237 316-498 (1006)
25 PLN02676 polyamine oxidase 99.9 8.2E-20 1.8E-24 198.4 32.2 353 155-568 24-394 (487)
26 PLN02529 lysine-specific histo 99.9 2.1E-19 4.5E-24 200.6 36.0 342 156-568 159-515 (738)
27 PLN02568 polyamine oxidase 99.9 3E-19 6.5E-24 195.5 32.7 299 156-485 4-342 (539)
28 KOG0399 Glutamate synthase [Am 99.9 8.6E-23 1.9E-27 222.2 4.6 170 47-237 1676-1853(2142)
29 TIGR01316 gltA glutamate synth 99.9 1.3E-22 2.8E-27 218.9 4.6 158 40-204 11-179 (449)
30 PLN02328 lysine-specific histo 99.9 3.8E-19 8.2E-24 199.3 32.5 344 156-568 237-595 (808)
31 TIGR03467 HpnE squalene-associ 99.9 6.7E-19 1.5E-23 188.6 32.8 337 171-570 1-350 (419)
32 PRK12778 putative bifunctional 99.9 1.4E-22 3E-27 231.8 4.3 180 40-237 314-499 (752)
33 PLN03000 amine oxidase 99.8 3E-18 6.4E-23 192.0 35.4 344 156-568 183-539 (881)
34 PTZ00363 rab-GDP dissociation 99.8 5.9E-19 1.3E-23 188.1 28.3 327 155-535 2-360 (443)
35 PF01593 Amino_oxidase: Flavin 99.8 3.4E-19 7.3E-24 190.6 26.2 166 380-569 206-373 (450)
36 PRK12810 gltD glutamate syntha 99.8 9E-22 1.9E-26 213.7 3.9 176 40-236 29-210 (471)
37 COG1231 Monoamine oxidase [Ami 99.8 6.6E-19 1.4E-23 181.1 22.9 348 155-570 5-369 (450)
38 KOG0029 Amine oxidase [Seconda 99.8 2.3E-18 5E-23 185.4 27.2 358 155-568 13-378 (501)
39 TIGR01317 GOGAT_sm_gam glutama 99.8 2.6E-21 5.6E-26 210.3 3.5 183 31-236 20-210 (485)
40 PRK11749 dihydropyrimidine deh 99.8 5E-21 1.1E-25 207.4 3.7 177 40-236 25-207 (457)
41 PLN02976 amine oxidase 99.8 5.7E-17 1.2E-21 186.1 35.5 377 155-569 691-1106(1713)
42 COG2907 Predicted NAD/FAD-bind 99.8 1E-16 2.2E-21 157.9 23.2 282 154-475 5-302 (447)
43 KOG0685 Flavin-containing amin 99.7 4E-17 8.7E-22 167.8 18.5 294 156-494 20-338 (498)
44 TIGR03315 Se_ygfK putative sel 99.7 2.1E-18 4.5E-23 197.4 5.6 139 57-205 440-584 (1012)
45 PRK09853 putative selenate red 99.7 3.3E-18 7.1E-23 194.9 5.9 160 57-237 442-607 (1019)
46 KOG1276 Protoporphyrinogen oxi 99.7 5E-15 1.1E-19 150.0 24.7 362 155-563 9-416 (491)
47 COG3349 Uncharacterized conser 99.7 1.5E-15 3.3E-20 159.4 17.4 373 158-572 1-395 (485)
48 PRK12771 putative glutamate sy 99.7 4E-17 8.7E-22 181.3 5.3 158 57-236 42-204 (564)
49 PRK12814 putative NADPH-depend 99.6 7.4E-17 1.6E-21 181.4 5.5 140 54-204 94-239 (652)
50 PRK13984 putative oxidoreducta 99.6 9.1E-17 2E-21 180.1 4.6 149 42-202 172-327 (604)
51 PRK13977 myosin-cross-reactive 99.6 3.9E-13 8.4E-18 145.1 23.6 71 156-232 21-97 (576)
52 COG3380 Predicted NAD/FAD-depe 99.6 3.5E-14 7.6E-19 136.0 13.4 254 158-563 2-261 (331)
53 PRK06567 putative bifunctional 99.5 2.4E-15 5.2E-20 169.4 3.7 123 61-194 277-420 (1028)
54 COG2081 Predicted flavoprotein 99.5 4.5E-13 9.8E-18 136.2 17.4 65 376-441 100-165 (408)
55 PF01266 DAO: FAD dependent ox 99.5 5E-14 1.1E-18 147.1 9.9 68 376-444 134-204 (358)
56 PF03486 HI0933_like: HI0933-l 99.4 1.8E-12 4E-17 137.1 15.0 68 376-443 98-166 (409)
57 PF13450 NAD_binding_8: NAD(P) 99.4 1.6E-12 3.4E-17 101.8 7.5 67 162-231 1-67 (68)
58 COG0579 Predicted dehydrogenas 99.4 2.1E-11 4.6E-16 127.9 17.2 75 376-450 140-219 (429)
59 PF00996 GDI: GDP dissociation 99.3 6.1E-11 1.3E-15 125.3 20.5 324 155-534 2-358 (438)
60 PF14691 Fer4_20: Dihydroprymi 99.3 4.2E-15 9.1E-20 127.0 -9.0 99 40-146 7-111 (111)
61 PRK00711 D-amino acid dehydrog 99.3 9.7E-11 2.1E-15 125.6 19.6 68 376-444 188-258 (416)
62 COG0578 GlpA Glycerol-3-phosph 99.3 4.8E-11 1E-15 127.7 16.4 68 376-444 152-226 (532)
63 PRK11728 hydroxyglutarate oxid 99.3 1.1E-10 2.5E-15 124.2 18.1 66 376-443 136-204 (393)
64 TIGR01377 soxA_mon sarcosine o 99.3 9.7E-11 2.1E-15 124.0 16.8 65 377-443 133-200 (380)
65 COG1635 THI4 Ribulose 1,5-bisp 99.3 8.9E-11 1.9E-15 109.7 14.3 42 156-197 29-70 (262)
66 PRK11101 glpA sn-glycerol-3-ph 99.3 4.5E-11 9.8E-16 132.2 14.4 69 376-444 137-212 (546)
67 PRK12409 D-amino acid dehydrog 99.2 5.3E-11 1.1E-15 127.5 13.5 68 376-444 184-259 (410)
68 PTZ00383 malate:quinone oxidor 99.2 7.3E-11 1.6E-15 128.0 14.2 68 376-444 197-274 (497)
69 PRK01747 mnmC bifunctional tRN 99.2 1.4E-10 3E-15 131.6 16.6 67 376-444 395-464 (662)
70 PRK04176 ribulose-1,5-biphosph 99.2 1.7E-10 3.7E-15 115.1 15.2 61 386-446 104-176 (257)
71 TIGR01373 soxB sarcosine oxida 99.2 2E-10 4.3E-15 122.9 16.5 67 377-444 171-241 (407)
72 PRK11259 solA N-methyltryptoph 99.2 1.5E-10 3.3E-15 122.3 15.1 70 377-450 137-209 (376)
73 PRK12845 3-ketosteroid-delta-1 99.2 9.5E-10 2.1E-14 121.8 21.5 66 380-446 212-281 (564)
74 TIGR00292 thiazole biosynthesi 99.2 4.8E-10 1E-14 111.5 17.0 62 387-448 101-175 (254)
75 TIGR00031 UDP-GALP_mutase UDP- 99.2 3E-10 6.5E-15 118.8 16.3 58 158-215 2-60 (377)
76 PRK06481 fumarate reductase fl 99.2 6.5E-10 1.4E-14 122.0 19.6 59 386-444 190-252 (506)
77 PRK08274 tricarballylate dehyd 99.2 4.9E-10 1.1E-14 122.1 18.3 63 382-444 127-193 (466)
78 TIGR03329 Phn_aa_oxid putative 99.2 1.8E-10 4E-15 125.1 14.9 66 376-444 170-238 (460)
79 TIGR03364 HpnW_proposed FAD de 99.2 2E-10 4.3E-15 121.0 14.5 67 376-450 132-202 (365)
80 KOG2820 FAD-dependent oxidored 99.2 1E-09 2.2E-14 108.7 16.2 64 386-451 153-218 (399)
81 PF00890 FAD_binding_2: FAD bi 99.1 1E-09 2.3E-14 117.7 17.3 61 384-444 139-204 (417)
82 PRK12842 putative succinate de 99.1 3E-09 6.6E-14 118.6 21.0 58 386-443 214-275 (574)
83 PF01946 Thi4: Thi4 family; PD 99.1 4.3E-10 9.3E-15 106.0 11.9 42 156-197 16-57 (230)
84 PRK07121 hypothetical protein; 99.1 1.9E-09 4.1E-14 118.2 18.9 61 384-444 175-240 (492)
85 PRK12266 glpD glycerol-3-phosp 99.1 6E-10 1.3E-14 122.3 13.1 58 386-444 155-217 (508)
86 PRK06847 hypothetical protein; 99.1 2.2E-09 4.8E-14 113.5 16.9 63 386-449 107-169 (375)
87 COG0665 DadA Glycine/D-amino a 99.1 1.8E-09 3.9E-14 114.6 16.0 67 376-444 143-213 (387)
88 COG0644 FixC Dehydrogenases (f 99.1 2.3E-09 5E-14 114.2 16.7 65 387-451 96-160 (396)
89 TIGR01320 mal_quin_oxido malat 99.1 1.3E-09 2.7E-14 118.7 14.4 68 376-444 165-241 (483)
90 PRK10157 putative oxidoreducta 99.1 4.8E-09 1E-13 112.9 18.8 62 387-449 109-170 (428)
91 PRK08773 2-octaprenyl-3-methyl 99.1 2.1E-09 4.6E-14 114.4 15.6 64 386-450 113-176 (392)
92 PLN02464 glycerol-3-phosphate 99.1 1.6E-09 3.5E-14 121.4 15.1 64 386-449 232-303 (627)
93 PRK13339 malate:quinone oxidor 99.0 2.3E-09 5.1E-14 116.0 14.5 68 376-444 171-248 (497)
94 PRK05257 malate:quinone oxidor 99.0 9.3E-09 2E-13 112.1 19.2 68 376-444 170-247 (494)
95 TIGR01813 flavo_cyto_c flavocy 99.0 7.1E-09 1.5E-13 112.1 18.0 59 386-444 130-193 (439)
96 TIGR01988 Ubi-OHases Ubiquinon 99.0 5.1E-09 1.1E-13 110.9 16.3 63 387-450 107-170 (385)
97 PRK05714 2-octaprenyl-3-methyl 99.0 4.6E-09 9.9E-14 112.3 16.1 64 387-451 113-176 (405)
98 PRK12844 3-ketosteroid-delta-1 99.0 1.1E-08 2.3E-13 113.7 18.9 60 385-444 207-270 (557)
99 PRK13369 glycerol-3-phosphate 99.0 1.2E-09 2.7E-14 119.8 11.0 58 386-444 155-216 (502)
100 PRK12843 putative FAD-binding 99.0 2.1E-08 4.6E-13 111.8 20.9 63 386-448 221-287 (578)
101 PRK06134 putative FAD-binding 99.0 2.7E-08 5.9E-13 111.0 21.7 59 386-444 217-279 (581)
102 COG0654 UbiH 2-polyprenyl-6-me 99.0 8.7E-09 1.9E-13 109.5 17.0 64 386-450 104-169 (387)
103 PRK07190 hypothetical protein; 99.0 8.6E-09 1.9E-13 112.5 16.4 63 387-450 110-172 (487)
104 PRK07364 2-octaprenyl-6-methox 99.0 1.2E-08 2.7E-13 109.3 17.0 63 387-450 122-188 (415)
105 PRK06175 L-aspartate oxidase; 99.0 1.3E-08 2.9E-13 109.4 17.2 58 386-443 128-189 (433)
106 PRK12835 3-ketosteroid-delta-1 99.0 1.5E-08 3.3E-13 112.9 18.0 60 385-444 212-276 (584)
107 PRK06184 hypothetical protein; 99.0 9.5E-09 2.1E-13 113.0 16.2 63 387-450 110-175 (502)
108 TIGR02032 GG-red-SF geranylger 99.0 9.7E-09 2.1E-13 104.4 15.2 63 387-450 92-155 (295)
109 PRK07573 sdhA succinate dehydr 99.0 1.2E-08 2.6E-13 114.8 17.2 57 388-444 172-233 (640)
110 TIGR01984 UbiH 2-polyprenyl-6- 99.0 1.4E-08 3E-13 107.6 16.5 64 386-450 105-169 (382)
111 PRK07608 ubiquinone biosynthes 99.0 1.5E-08 3.4E-13 107.5 16.8 62 387-450 112-174 (388)
112 PLN02661 Putative thiazole syn 99.0 3E-08 6.5E-13 101.7 18.0 41 156-196 91-132 (357)
113 PRK06834 hypothetical protein; 99.0 8.5E-09 1.8E-13 112.6 15.0 63 387-450 101-163 (488)
114 PRK08163 salicylate hydroxylas 99.0 1.6E-08 3.5E-13 107.7 16.8 62 387-449 110-172 (396)
115 PRK12837 3-ketosteroid-delta-1 99.0 2.7E-08 5.9E-13 109.5 19.0 59 386-444 173-236 (513)
116 KOG2844 Dimethylglycine dehydr 99.0 4.3E-09 9.3E-14 112.3 12.0 69 375-444 173-244 (856)
117 PRK10015 oxidoreductase; Provi 99.0 1.1E-08 2.4E-13 110.0 15.6 62 387-449 109-170 (429)
118 PRK06452 sdhA succinate dehydr 99.0 2.3E-08 5E-13 111.2 18.5 58 386-443 136-198 (566)
119 PRK07236 hypothetical protein; 99.0 2.7E-08 5.9E-13 105.7 18.3 49 400-449 112-160 (386)
120 PRK06185 hypothetical protein; 99.0 1.9E-08 4.1E-13 107.6 17.2 64 387-450 109-176 (407)
121 PRK07333 2-octaprenyl-6-methox 99.0 1.9E-08 4.2E-13 107.4 17.0 64 386-450 111-174 (403)
122 PRK12834 putative FAD-binding 98.9 2.2E-08 4.7E-13 111.2 17.8 42 156-197 3-46 (549)
123 TIGR01812 sdhA_frdA_Gneg succi 98.9 3E-08 6.6E-13 110.6 19.0 59 386-444 129-192 (566)
124 PRK08020 ubiF 2-octaprenyl-3-m 98.9 2.7E-08 5.8E-13 105.9 17.3 63 387-450 113-176 (391)
125 PRK07804 L-aspartate oxidase; 98.9 3.5E-08 7.6E-13 109.2 18.7 58 386-443 144-210 (541)
126 PRK07588 hypothetical protein; 98.9 2E-08 4.2E-13 107.0 15.8 61 387-449 104-164 (391)
127 TIGR03378 glycerol3P_GlpB glyc 98.9 3.5E-08 7.6E-13 103.9 17.1 57 386-442 263-321 (419)
128 PRK09126 hypothetical protein; 98.9 2.2E-08 4.7E-13 106.6 15.9 62 388-450 112-174 (392)
129 PRK06854 adenylylsulfate reduc 98.9 6.2E-08 1.3E-12 108.5 20.1 58 386-443 132-195 (608)
130 PTZ00139 Succinate dehydrogena 98.9 5.8E-08 1.3E-12 108.9 19.8 58 386-443 166-229 (617)
131 PRK09078 sdhA succinate dehydr 98.9 6.2E-08 1.3E-12 108.4 19.9 59 386-444 149-213 (598)
132 PRK07843 3-ketosteroid-delta-1 98.9 7.7E-08 1.7E-12 106.9 20.5 59 386-444 208-270 (557)
133 PRK07045 putative monooxygenas 98.9 3E-08 6.5E-13 105.4 16.6 62 387-448 107-170 (388)
134 PRK08013 oxidoreductase; Provi 98.9 2.6E-08 5.5E-13 106.4 16.0 63 387-450 112-175 (400)
135 PRK07494 2-octaprenyl-6-methox 98.9 2E-08 4.4E-13 106.7 14.9 63 387-450 112-174 (388)
136 KOG1439 RAB proteins geranylge 98.9 1.3E-07 2.9E-12 96.0 19.6 323 157-534 4-358 (440)
137 PRK08958 sdhA succinate dehydr 98.9 6.7E-08 1.5E-12 107.8 19.4 60 385-444 142-207 (588)
138 PRK12839 hypothetical protein; 98.9 6.7E-08 1.5E-12 107.4 19.1 59 386-444 214-277 (572)
139 TIGR00275 flavoprotein, HI0933 98.9 4.1E-08 8.8E-13 104.7 16.5 58 384-443 103-160 (400)
140 PLN00128 Succinate dehydrogena 98.9 9.2E-08 2E-12 107.4 19.7 60 385-444 186-251 (635)
141 PRK05945 sdhA succinate dehydr 98.9 4E-08 8.6E-13 109.6 16.4 59 385-443 134-197 (575)
142 PLN02697 lycopene epsilon cycl 98.9 2E-08 4.3E-13 109.8 13.6 57 386-443 192-248 (529)
143 PRK08850 2-octaprenyl-6-methox 98.9 7.1E-08 1.5E-12 103.2 17.6 63 387-450 112-175 (405)
144 PRK05249 soluble pyridine nucl 98.9 7.2E-09 1.6E-13 112.8 10.1 58 386-444 216-273 (461)
145 PRK07803 sdhA succinate dehydr 98.9 9E-08 2E-12 107.6 19.1 58 386-443 138-213 (626)
146 PRK07057 sdhA succinate dehydr 98.9 1.4E-07 3.1E-12 105.3 20.6 59 386-444 148-212 (591)
147 PRK07395 L-aspartate oxidase; 98.9 4.1E-08 8.8E-13 108.7 16.0 59 385-443 133-197 (553)
148 PF01494 FAD_binding_3: FAD bi 98.9 1.4E-08 3E-13 105.8 11.6 66 386-451 111-180 (356)
149 PRK05868 hypothetical protein; 98.9 3.9E-08 8.5E-13 103.9 15.0 61 388-450 107-167 (372)
150 TIGR00551 nadB L-aspartate oxi 98.9 7.4E-08 1.6E-12 105.5 17.5 59 386-444 128-190 (488)
151 COG0562 Glf UDP-galactopyranos 98.9 2.6E-08 5.6E-13 98.4 12.3 100 158-266 2-104 (374)
152 PRK06183 mhpA 3-(3-hydroxyphen 98.8 6.3E-08 1.4E-12 107.4 16.9 63 388-451 115-182 (538)
153 PRK08244 hypothetical protein; 98.8 4E-08 8.6E-13 107.9 15.1 63 387-450 101-166 (493)
154 PRK08275 putative oxidoreducta 98.8 6.9E-08 1.5E-12 107.3 17.0 58 386-443 137-200 (554)
155 PRK08401 L-aspartate oxidase; 98.8 1.1E-07 2.3E-12 103.6 18.1 57 386-444 120-176 (466)
156 TIGR02485 CobZ_N-term precorri 98.8 5.5E-08 1.2E-12 104.9 15.8 64 380-443 117-183 (432)
157 PRK06069 sdhA succinate dehydr 98.8 1.3E-07 2.9E-12 105.5 19.2 59 386-444 137-201 (577)
158 PRK08626 fumarate reductase fl 98.8 5E-08 1.1E-12 110.0 15.8 61 384-444 156-221 (657)
159 PRK08849 2-octaprenyl-3-methyl 98.8 9E-08 2E-12 101.6 16.9 62 388-450 112-174 (384)
160 PRK05192 tRNA uridine 5-carbox 98.8 2.8E-08 6E-13 108.9 13.0 56 387-443 101-157 (618)
161 PF01134 GIDA: Glucose inhibit 98.8 3.1E-08 6.7E-13 103.1 12.4 55 387-442 96-151 (392)
162 PRK06263 sdhA succinate dehydr 98.8 1.7E-07 3.6E-12 104.1 18.6 58 386-443 134-197 (543)
163 PLN02463 lycopene beta cyclase 98.8 3.8E-08 8.3E-13 105.8 12.9 56 387-444 115-170 (447)
164 PLN02815 L-aspartate oxidase 98.8 1.3E-07 2.8E-12 105.3 17.1 58 386-443 155-222 (594)
165 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1.2E-07 2.5E-12 101.0 16.1 64 387-451 104-171 (390)
166 PRK05329 anaerobic glycerol-3- 98.8 3.6E-08 7.9E-13 104.9 12.1 58 386-443 259-318 (422)
167 PRK08071 L-aspartate oxidase; 98.8 1.1E-07 2.4E-12 104.5 16.3 58 386-444 130-191 (510)
168 PRK06753 hypothetical protein; 98.8 1.2E-07 2.5E-12 100.3 15.8 61 387-450 99-159 (373)
169 PF13738 Pyr_redox_3: Pyridine 98.8 1.7E-08 3.7E-13 96.9 8.6 55 387-442 83-137 (203)
170 PRK08132 FAD-dependent oxidore 98.8 2.3E-07 4.9E-12 103.2 18.7 65 387-451 126-193 (547)
171 PRK08205 sdhA succinate dehydr 98.8 2.1E-07 4.5E-12 104.1 18.2 58 386-443 140-206 (583)
172 PRK06475 salicylate hydroxylas 98.8 2.4E-07 5.3E-12 98.9 17.8 63 387-450 108-174 (400)
173 PRK06126 hypothetical protein; 98.8 9.1E-08 2E-12 106.4 14.9 63 387-450 127-195 (545)
174 PRK05732 2-octaprenyl-6-methox 98.8 1.6E-07 3.4E-12 100.0 15.8 62 388-450 114-176 (395)
175 PRK08243 4-hydroxybenzoate 3-m 98.8 1.2E-07 2.6E-12 101.0 14.8 64 387-451 104-171 (392)
176 PTZ00306 NADH-dependent fumara 98.8 2.6E-07 5.7E-12 110.7 19.2 43 155-197 407-449 (1167)
177 PRK07512 L-aspartate oxidase; 98.8 1.9E-07 4.2E-12 102.7 16.8 59 385-443 135-197 (513)
178 PRK06617 2-octaprenyl-6-methox 98.8 1.8E-07 4E-12 98.9 16.1 64 386-451 104-168 (374)
179 PRK09231 fumarate reductase fl 98.7 3.1E-07 6.7E-12 102.5 18.0 59 386-444 133-197 (582)
180 PRK08641 sdhA succinate dehydr 98.7 3.6E-07 7.9E-12 102.1 18.4 59 386-444 133-201 (589)
181 PLN02172 flavin-containing mon 98.7 1.2E-07 2.6E-12 102.6 14.1 42 156-197 9-50 (461)
182 PRK09077 L-aspartate oxidase; 98.7 5.1E-07 1.1E-11 99.9 19.1 59 386-444 138-208 (536)
183 TIGR01811 sdhA_Bsu succinate d 98.7 3E-07 6.5E-12 102.9 17.0 58 386-443 129-196 (603)
184 TIGR02023 BchP-ChlP geranylger 98.7 2.4E-07 5.1E-12 98.6 15.5 62 387-450 93-162 (388)
185 TIGR01292 TRX_reduct thioredox 98.7 1.9E-07 4.2E-12 95.2 14.3 51 391-443 62-112 (300)
186 PRK07538 hypothetical protein; 98.7 2E-07 4.2E-12 100.1 14.5 63 387-450 103-172 (413)
187 TIGR01176 fum_red_Fp fumarate 98.7 6.3E-07 1.4E-11 99.9 18.9 60 385-444 131-196 (580)
188 PRK06116 glutathione reductase 98.7 2.4E-08 5.2E-13 108.3 7.3 59 386-444 208-266 (450)
189 TIGR03219 salicylate_mono sali 98.7 1.6E-07 3.4E-12 100.8 13.4 60 387-449 106-165 (414)
190 TIGR01790 carotene-cycl lycope 98.7 1.3E-07 2.9E-12 100.4 12.2 58 386-444 85-142 (388)
191 TIGR01989 COQ6 Ubiquinone bios 98.7 4E-07 8.8E-12 98.4 15.1 63 387-450 118-190 (437)
192 PF12831 FAD_oxidored: FAD dep 98.6 3.7E-08 8.1E-13 105.9 6.9 58 392-450 96-156 (428)
193 TIGR02028 ChlP geranylgeranyl 98.6 5.8E-07 1.3E-11 95.9 15.8 36 158-193 1-36 (398)
194 TIGR01350 lipoamide_DH dihydro 98.6 7.1E-07 1.5E-11 97.2 16.6 58 386-444 211-270 (461)
195 PLN00093 geranylgeranyl diphos 98.6 8.2E-07 1.8E-11 96.0 16.6 36 155-190 37-72 (450)
196 TIGR02462 pyranose_ox pyranose 98.6 8.5E-07 1.8E-11 97.0 16.6 37 158-194 1-37 (544)
197 PRK15317 alkyl hydroperoxide r 98.6 6.2E-07 1.3E-11 99.0 15.4 54 388-442 268-321 (517)
198 PLN02985 squalene monooxygenas 98.6 1.4E-06 3E-11 95.7 18.0 64 387-451 148-216 (514)
199 PRK06467 dihydrolipoamide dehy 98.6 7.1E-07 1.5E-11 97.3 15.6 42 156-197 3-44 (471)
200 TIGR01424 gluta_reduc_2 glutat 98.6 6.7E-07 1.4E-11 96.9 15.2 40 157-197 2-41 (446)
201 PRK05976 dihydrolipoamide dehy 98.6 6.4E-07 1.4E-11 97.8 15.1 41 156-197 3-43 (472)
202 PRK06996 hypothetical protein; 98.6 1.4E-06 3E-11 93.0 17.2 63 387-450 116-182 (398)
203 PF00732 GMC_oxred_N: GMC oxid 98.6 2.7E-07 5.9E-12 94.2 11.2 65 387-451 193-266 (296)
204 TIGR03140 AhpF alkyl hydropero 98.6 4.8E-07 1E-11 99.7 13.9 55 388-443 269-323 (515)
205 PLN02927 antheraxanthin epoxid 98.6 9.3E-07 2E-11 98.6 16.0 59 387-449 195-254 (668)
206 PRK11445 putative oxidoreducta 98.6 1.5E-06 3.1E-11 91.2 16.5 54 397-451 109-165 (351)
207 TIGR02061 aprA adenosine phosp 98.6 2.7E-06 5.8E-11 95.0 19.2 57 387-443 127-191 (614)
208 TIGR00136 gidA glucose-inhibit 98.6 8.5E-07 1.9E-11 97.2 14.1 56 387-443 97-154 (617)
209 PRK07818 dihydrolipoamide dehy 98.5 2.8E-07 6E-12 100.5 10.4 58 386-444 213-274 (466)
210 PF06100 Strep_67kDa_ant: Stre 98.5 4.3E-06 9.4E-11 88.4 18.3 70 157-232 2-77 (500)
211 COG1249 Lpd Pyruvate/2-oxoglut 98.5 2.2E-06 4.8E-11 91.9 15.7 59 386-445 214-274 (454)
212 PLN02507 glutathione reductase 98.5 8.1E-07 1.7E-11 97.4 12.1 58 386-444 244-301 (499)
213 PRK06416 dihydrolipoamide dehy 98.5 1.6E-06 3.4E-11 94.5 14.3 41 156-197 3-43 (462)
214 KOG1298 Squalene monooxygenase 98.5 1.8E-06 4E-11 87.2 13.2 96 387-496 148-248 (509)
215 PRK08294 phenol 2-monooxygenas 98.5 2.3E-06 4.9E-11 96.5 15.3 63 387-450 142-217 (634)
216 COG3075 GlpB Anaerobic glycero 98.5 4.3E-06 9.4E-11 83.0 15.1 57 387-443 259-317 (421)
217 PRK09897 hypothetical protein; 98.5 3.4E-06 7.3E-11 92.5 16.0 54 387-441 108-164 (534)
218 PTZ00367 squalene epoxidase; P 98.4 3.9E-06 8.4E-11 92.9 15.4 35 156-190 32-66 (567)
219 PF05834 Lycopene_cycl: Lycope 98.4 4.8E-06 1E-10 88.1 15.1 55 387-443 88-142 (374)
220 COG5044 MRS6 RAB proteins gera 98.4 6.2E-06 1.3E-10 83.1 14.4 245 155-437 4-278 (434)
221 COG0492 TrxB Thioredoxin reduc 98.4 4.1E-06 8.9E-11 85.4 13.2 54 387-443 62-115 (305)
222 PRK06327 dihydrolipoamide dehy 98.4 2.6E-06 5.7E-11 93.1 12.6 42 156-197 3-50 (475)
223 PRK13800 putative oxidoreducta 98.4 1.2E-05 2.7E-10 94.2 18.7 58 386-443 139-205 (897)
224 KOG2415 Electron transfer flav 98.4 5.3E-06 1.2E-10 84.6 13.0 58 385-442 182-255 (621)
225 KOG2404 Fumarate reductase, fl 98.3 5.5E-06 1.2E-10 81.9 11.7 39 159-197 11-49 (477)
226 PF06039 Mqo: Malate:quinone o 98.3 4.5E-06 9.8E-11 87.4 11.8 70 385-456 180-255 (488)
227 COG1252 Ndh NADH dehydrogenase 98.3 4.9E-06 1.1E-10 87.2 12.1 53 386-443 209-262 (405)
228 KOG2852 Possible oxidoreductas 98.3 3.5E-06 7.6E-11 82.2 10.0 62 387-451 148-214 (380)
229 PF13454 NAD_binding_9: FAD-NA 98.3 8.5E-06 1.8E-10 75.0 12.2 52 388-441 103-155 (156)
230 TIGR01438 TGR thioredoxin and 98.3 1.8E-06 3.8E-11 94.4 8.6 58 386-444 220-280 (484)
231 TIGR02352 thiamin_ThiO glycine 98.3 7.2E-06 1.6E-10 85.1 12.7 68 376-444 124-194 (337)
232 COG2509 Uncharacterized FAD-de 98.3 1.1E-05 2.3E-10 84.0 12.9 58 385-442 172-229 (486)
233 KOG1335 Dihydrolipoamide dehyd 98.2 1.3E-05 2.8E-10 81.2 12.4 58 386-443 252-314 (506)
234 PF04820 Trp_halogenase: Trypt 98.2 1.4E-05 3.1E-10 86.4 13.6 57 386-443 154-211 (454)
235 KOG0042 Glycerol-3-phosphate d 98.2 3.1E-06 6.8E-11 89.0 7.6 101 376-487 212-321 (680)
236 TIGR01810 betA choline dehydro 98.2 5.4E-05 1.2E-09 84.0 17.8 53 398-450 206-262 (532)
237 TIGR03197 MnmC_Cterm tRNA U-34 98.2 1.5E-05 3.2E-10 84.6 12.1 67 376-444 122-191 (381)
238 PLN02852 ferredoxin-NADP+ redu 98.2 3.8E-06 8.3E-11 91.0 7.6 42 156-197 25-68 (491)
239 PRK07845 flavoprotein disulfid 98.2 2.5E-05 5.4E-10 85.2 14.0 39 158-197 2-40 (466)
240 KOG2853 Possible oxidoreductas 98.1 4.3E-05 9.3E-10 76.3 13.6 37 156-192 85-125 (509)
241 KOG2614 Kynurenine 3-monooxyge 98.1 4.8E-05 1E-09 78.4 14.2 38 157-194 2-39 (420)
242 COG2303 BetA Choline dehydroge 98.1 5.9E-06 1.3E-10 91.3 8.1 63 388-450 204-273 (542)
243 COG3573 Predicted oxidoreducta 98.1 4.2E-05 9.1E-10 76.2 12.8 47 156-203 4-52 (552)
244 COG1053 SdhA Succinate dehydro 98.1 5.7E-05 1.2E-09 83.3 15.2 43 155-197 4-46 (562)
245 PRK06115 dihydrolipoamide dehy 98.0 4.2E-06 9.1E-11 91.2 5.1 41 157-197 3-43 (466)
246 TIGR01421 gluta_reduc_1 glutat 98.0 5.2E-06 1.1E-10 90.0 5.2 59 386-444 207-266 (450)
247 PRK14694 putative mercuric red 98.0 6.5E-06 1.4E-10 89.8 5.8 57 386-444 218-274 (468)
248 PRK07251 pyridine nucleotide-d 98.0 6E-06 1.3E-10 89.3 5.3 57 386-444 198-254 (438)
249 TIGR03377 glycerol3P_GlpA glyc 98.0 5.6E-05 1.2E-09 83.5 12.7 69 376-444 116-191 (516)
250 PRK06370 mercuric reductase; V 98.0 7.2E-06 1.6E-10 89.3 5.6 59 386-444 212-272 (463)
251 COG0029 NadB Aspartate oxidase 98.0 7.6E-05 1.6E-09 78.6 12.7 57 386-442 133-195 (518)
252 PRK08010 pyridine nucleotide-d 98.0 7.4E-06 1.6E-10 88.7 5.4 57 386-444 199-255 (441)
253 PRK08255 salicylyl-CoA 5-hydro 98.0 3.9E-05 8.5E-10 88.5 11.5 52 386-450 97-148 (765)
254 PLN02785 Protein HOTHEAD 97.9 3.9E-05 8.4E-10 85.5 10.6 74 383-456 217-303 (587)
255 KOG1399 Flavin-containing mono 97.9 9.4E-06 2E-10 86.7 5.3 42 156-197 5-46 (448)
256 COG2072 TrkA Predicted flavopr 97.9 1.4E-05 2.9E-10 86.3 6.4 85 155-239 6-102 (443)
257 TIGR03143 AhpF_homolog putativ 97.9 1.2E-05 2.5E-10 89.6 5.9 41 156-197 3-43 (555)
258 COG1148 HdrA Heterodisulfide r 97.9 1.4E-05 2.9E-10 83.3 5.0 43 156-198 123-165 (622)
259 PRK06292 dihydrolipoamide dehy 97.9 1.4E-05 3.1E-10 86.9 5.4 40 157-197 3-42 (460)
260 TIGR02053 MerA mercuric reduct 97.9 1.5E-05 3.1E-10 87.0 5.3 58 386-444 207-267 (463)
261 PTZ00058 glutathione reductase 97.9 1.7E-05 3.6E-10 87.9 5.6 58 386-444 278-337 (561)
262 PTZ00188 adrenodoxin reductase 97.8 2.5E-05 5.5E-10 83.6 6.1 46 156-202 38-84 (506)
263 PRK10262 thioredoxin reductase 97.8 2.4E-05 5.2E-10 80.9 5.8 57 387-443 186-248 (321)
264 PRK13748 putative mercuric red 97.8 1.8E-05 4E-10 88.3 5.2 57 386-444 310-366 (561)
265 COG0445 GidA Flavin-dependent 97.8 2.3E-05 5.1E-10 83.1 5.4 52 390-442 104-157 (621)
266 PRK09564 coenzyme A disulfide 97.8 0.00015 3.2E-09 78.6 11.5 47 396-443 66-115 (444)
267 PTZ00318 NADH dehydrogenase-li 97.8 0.00014 3.1E-09 78.2 11.2 52 386-442 228-279 (424)
268 PRK14727 putative mercuric red 97.8 3E-05 6.6E-10 84.8 5.9 57 386-444 228-284 (479)
269 PRK09754 phenylpropionate diox 97.8 0.00033 7E-09 74.8 13.5 50 393-444 193-242 (396)
270 KOG2665 Predicted FAD-dependen 97.8 0.0004 8.7E-09 68.9 12.7 59 385-443 195-257 (453)
271 PTZ00052 thioredoxin reductase 97.7 3.2E-05 6.8E-10 85.0 5.4 58 386-444 222-279 (499)
272 TIGR01423 trypano_reduc trypan 97.7 3.7E-05 8.1E-10 84.0 5.5 59 386-444 231-289 (486)
273 PRK04965 NADH:flavorubredoxin 97.7 0.00043 9.3E-09 73.3 13.4 50 393-443 190-239 (377)
274 PF00743 FMO-like: Flavin-bind 97.7 3.7E-05 8.1E-10 84.6 5.0 38 158-195 2-39 (531)
275 PTZ00153 lipoamide dehydrogena 97.7 8.4E-05 1.8E-09 83.6 7.9 43 155-197 114-157 (659)
276 PLN02546 glutathione reductase 97.6 5.8E-05 1.3E-09 83.6 5.8 59 386-444 293-351 (558)
277 PF00070 Pyr_redox: Pyridine n 97.6 0.00013 2.8E-09 58.9 5.8 58 159-237 1-58 (80)
278 PRK12770 putative glutamate sy 97.6 0.00015 3.2E-09 76.1 7.8 42 156-197 17-58 (352)
279 PRK05335 tRNA (uracil-5-)-meth 97.6 7.5E-05 1.6E-09 78.9 5.3 36 158-193 3-38 (436)
280 TIGR01372 soxA sarcosine oxida 97.6 7.9E-05 1.7E-09 88.3 6.0 42 156-197 162-203 (985)
281 TIGR01789 lycopene_cycl lycope 97.5 8.3E-05 1.8E-09 78.5 5.0 37 159-195 1-39 (370)
282 PRK06416 dihydrolipoamide dehy 97.5 0.001 2.2E-08 72.5 13.3 50 394-444 221-273 (462)
283 COG4716 Myosin-crossreactive a 97.5 0.00075 1.6E-08 68.4 10.5 51 157-207 22-78 (587)
284 TIGR03169 Nterm_to_SelD pyridi 97.5 0.00079 1.7E-08 70.9 11.4 53 386-443 191-243 (364)
285 PF07992 Pyr_redox_2: Pyridine 97.5 0.00012 2.6E-09 69.9 4.7 32 159-190 1-32 (201)
286 COG0446 HcaD Uncharacterized N 97.5 0.00081 1.8E-08 71.6 11.4 52 392-443 184-237 (415)
287 TIGR01421 gluta_reduc_1 glutat 97.4 0.0016 3.4E-08 70.8 13.4 35 158-192 167-201 (450)
288 PRK05976 dihydrolipoamide dehy 97.4 0.0015 3.2E-08 71.4 13.1 51 394-444 229-282 (472)
289 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00015 3.2E-09 77.1 4.9 37 158-194 1-37 (433)
290 TIGR02374 nitri_red_nirB nitri 97.4 0.0013 2.7E-08 76.4 13.0 50 393-443 189-238 (785)
291 PRK14989 nitrite reductase sub 97.4 0.0014 3.1E-08 76.2 13.1 53 392-444 193-246 (847)
292 KOG2311 NAD/FAD-utilizing prot 97.4 0.0014 3.1E-08 68.5 11.3 39 155-193 26-65 (679)
293 PRK07845 flavoprotein disulfid 97.4 0.0022 4.8E-08 70.0 13.7 51 393-444 225-275 (466)
294 PRK07251 pyridine nucleotide-d 97.4 0.0022 4.8E-08 69.3 13.6 36 157-192 157-192 (438)
295 KOG0405 Pyridine nucleotide-di 97.3 0.00014 3.1E-09 73.0 3.4 58 386-443 230-287 (478)
296 PRK14989 nitrite reductase sub 97.3 0.0013 2.8E-08 76.5 11.3 45 396-443 69-113 (847)
297 PRK06912 acoL dihydrolipoamide 97.3 0.00024 5.2E-09 77.3 4.9 57 386-444 211-269 (458)
298 TIGR01424 gluta_reduc_2 glutat 97.3 0.0033 7.1E-08 68.2 13.6 50 394-444 215-264 (446)
299 KOG1238 Glucose dehydrogenase/ 97.3 0.0063 1.4E-07 66.6 15.5 38 155-192 55-93 (623)
300 TIGR01423 trypano_reduc trypan 97.3 0.0031 6.7E-08 69.0 13.5 36 157-192 187-225 (486)
301 PRK02106 choline dehydrogenase 97.3 0.00026 5.6E-09 79.1 5.1 54 398-451 213-270 (560)
302 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.0031 6.7E-08 68.0 13.2 47 394-443 187-233 (427)
303 PRK06370 mercuric reductase; V 97.2 0.0044 9.5E-08 67.6 13.9 36 157-192 171-206 (463)
304 PRK06327 dihydrolipoamide dehy 97.2 0.0038 8.1E-08 68.3 13.4 50 394-444 232-285 (475)
305 TIGR03862 flavo_PP4765 unchara 97.2 0.0071 1.5E-07 63.5 14.5 65 376-443 75-141 (376)
306 TIGR02374 nitri_red_nirB nitri 97.2 0.0016 3.4E-08 75.6 10.1 45 396-443 64-108 (785)
307 PRK07846 mycothione reductase; 97.2 0.0046 9.9E-08 67.2 13.2 46 398-444 218-263 (451)
308 TIGR02053 MerA mercuric reduct 97.2 0.0044 9.5E-08 67.6 13.0 35 158-192 167-201 (463)
309 PTZ00052 thioredoxin reductase 97.2 0.0043 9.2E-08 68.3 12.9 32 158-189 183-214 (499)
310 PRK05675 sdhA succinate dehydr 97.1 0.012 2.6E-07 65.8 16.5 60 385-444 125-190 (570)
311 COG4529 Uncharacterized protei 97.1 0.0068 1.5E-07 64.3 13.4 40 158-197 2-44 (474)
312 PRK06912 acoL dihydrolipoamide 97.1 0.0063 1.4E-07 66.2 13.8 36 157-192 170-205 (458)
313 PRK13512 coenzyme A disulfide 97.1 0.0042 9E-08 67.2 12.1 46 393-443 196-241 (438)
314 PRK06115 dihydrolipoamide dehy 97.1 0.0065 1.4E-07 66.3 13.7 35 157-191 174-208 (466)
315 PRK09564 coenzyme A disulfide 97.1 0.0064 1.4E-07 65.9 13.5 50 392-443 197-246 (444)
316 PRK08010 pyridine nucleotide-d 97.1 0.0063 1.4E-07 65.9 13.2 35 158-192 159-193 (441)
317 PRK14694 putative mercuric red 97.1 0.0068 1.5E-07 66.2 13.5 33 157-189 178-210 (468)
318 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0011 2.4E-08 66.7 6.5 56 387-442 267-324 (520)
319 PRK14727 putative mercuric red 97.0 0.0063 1.4E-07 66.7 12.9 32 158-189 189-220 (479)
320 PRK13748 putative mercuric red 97.0 0.0065 1.4E-07 68.0 13.1 33 157-189 270-302 (561)
321 TIGR03452 mycothione_red mycot 97.0 0.00067 1.4E-08 73.7 4.8 56 387-444 211-266 (452)
322 TIGR03452 mycothione_red mycot 97.0 0.0087 1.9E-07 65.0 13.4 35 157-191 169-203 (452)
323 PRK07846 mycothione reductase; 97.0 0.00068 1.5E-08 73.6 4.6 38 157-197 1-38 (451)
324 KOG2960 Protein involved in th 97.0 0.00027 5.9E-09 66.1 1.3 41 157-197 76-118 (328)
325 PF13434 K_oxygenase: L-lysine 96.9 0.0036 7.8E-08 65.2 9.3 35 157-191 2-37 (341)
326 PTZ00058 glutathione reductase 96.9 0.011 2.4E-07 65.7 13.6 36 157-192 237-272 (561)
327 KOG1800 Ferredoxin/adrenodoxin 96.9 0.0016 3.4E-08 66.5 5.6 43 155-197 18-62 (468)
328 KOG4716 Thioredoxin reductase 96.8 0.0018 3.9E-08 65.0 5.2 53 155-209 17-70 (503)
329 PLN02546 glutathione reductase 96.8 0.015 3.2E-07 64.7 13.0 36 157-192 252-287 (558)
330 PRK06467 dihydrolipoamide dehy 96.7 0.017 3.7E-07 63.1 12.8 34 158-191 175-208 (471)
331 PRK10262 thioredoxin reductase 96.7 0.013 2.8E-07 60.6 11.1 34 157-190 146-179 (321)
332 TIGR03140 AhpF alkyl hydropero 96.6 0.017 3.6E-07 63.9 11.5 45 399-443 401-450 (515)
333 KOG1336 Monodehydroascorbate/f 96.5 0.025 5.4E-07 59.8 11.3 58 392-450 261-319 (478)
334 TIGR01316 gltA glutamate synth 96.4 0.034 7.4E-07 60.3 12.9 34 157-190 272-305 (449)
335 PRK09754 phenylpropionate diox 96.4 0.0035 7.6E-08 66.8 5.0 36 157-192 3-40 (396)
336 PRK06292 dihydrolipoamide dehy 96.4 0.034 7.3E-07 60.5 12.8 35 157-191 169-203 (460)
337 PRK13512 coenzyme A disulfide 96.4 0.0038 8.2E-08 67.6 5.1 36 158-193 2-39 (438)
338 KOG4405 GDP dissociation inhib 96.4 0.074 1.6E-06 55.0 13.6 48 155-202 6-53 (547)
339 PF07156 Prenylcys_lyase: Pren 96.0 0.023 5E-07 59.6 8.5 113 325-443 68-187 (368)
340 PRK11749 dihydropyrimidine deh 95.9 0.076 1.6E-06 57.8 12.2 34 156-189 272-306 (457)
341 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.01 2.3E-07 54.5 3.9 32 159-190 1-32 (157)
342 COG3486 IucD Lysine/ornithine 95.5 0.054 1.2E-06 56.3 8.4 37 155-191 3-40 (436)
343 TIGR01470 cysG_Nterm siroheme 95.4 0.38 8.3E-06 46.3 13.7 93 157-250 9-111 (205)
344 PF02737 3HCDH_N: 3-hydroxyacy 95.3 0.019 4.2E-07 54.0 4.0 32 159-190 1-32 (180)
345 COG1206 Gid NAD(FAD)-utilizing 95.1 0.036 7.8E-07 55.8 5.5 37 157-193 3-39 (439)
346 PRK04965 NADH:flavorubredoxin 95.1 0.028 6.1E-07 59.5 5.2 34 158-191 3-38 (377)
347 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.026 5.7E-07 53.4 4.1 33 158-190 1-33 (185)
348 KOG0404 Thioredoxin reductase 95.0 0.046 9.9E-07 52.1 5.5 43 157-199 8-54 (322)
349 TIGR01816 sdhA_forward succina 94.7 0.14 2.9E-06 57.4 9.5 58 386-443 119-181 (565)
350 TIGR01350 lipoamide_DH dihydro 94.7 0.057 1.2E-06 58.8 6.4 36 157-192 170-205 (461)
351 PRK06718 precorrin-2 dehydroge 94.6 1.1 2.3E-05 43.1 14.3 34 156-189 9-42 (202)
352 PRK02705 murD UDP-N-acetylmura 94.6 0.034 7.5E-07 60.5 4.5 34 159-192 2-35 (459)
353 PRK01438 murD UDP-N-acetylmura 94.5 0.044 9.4E-07 60.1 5.0 34 157-190 16-49 (480)
354 PF00070 Pyr_redox: Pyridine n 94.4 0.11 2.4E-06 41.6 5.9 42 385-427 39-80 (80)
355 KOG3855 Monooxygenase involved 94.4 0.045 9.7E-07 56.8 4.3 35 156-190 35-73 (481)
356 COG0569 TrkA K+ transport syst 94.2 0.056 1.2E-06 52.8 4.4 34 158-191 1-34 (225)
357 PRK05249 soluble pyridine nucl 94.1 0.095 2.1E-06 57.1 6.5 37 157-193 175-211 (461)
358 PRK07818 dihydrolipoamide dehy 94.0 0.099 2.2E-06 57.0 6.3 35 158-192 173-207 (466)
359 PF02558 ApbA: Ketopantoate re 94.0 0.08 1.7E-06 48.0 4.7 31 160-190 1-31 (151)
360 PRK06129 3-hydroxyacyl-CoA deh 93.9 0.06 1.3E-06 55.3 4.2 33 158-190 3-35 (308)
361 TIGR01372 soxA sarcosine oxida 93.8 0.46 1E-05 56.8 12.0 47 396-443 361-411 (985)
362 PRK06249 2-dehydropantoate 2-r 93.8 0.09 2E-06 54.2 5.3 35 156-190 4-38 (313)
363 PF13241 NAD_binding_7: Putati 93.8 0.087 1.9E-06 44.7 4.3 91 156-248 6-100 (103)
364 PRK07819 3-hydroxybutyryl-CoA 93.7 0.082 1.8E-06 53.7 4.8 34 158-191 6-39 (286)
365 PRK14106 murD UDP-N-acetylmura 93.5 0.09 1.9E-06 57.1 4.9 34 157-190 5-38 (450)
366 PRK07066 3-hydroxybutyryl-CoA 93.5 0.11 2.3E-06 53.6 5.2 33 158-190 8-40 (321)
367 PF01488 Shikimate_DH: Shikima 93.3 0.15 3.3E-06 45.5 5.1 34 156-189 11-45 (135)
368 COG1249 Lpd Pyruvate/2-oxoglut 93.1 0.13 2.7E-06 55.7 5.1 38 156-193 172-209 (454)
369 PRK08293 3-hydroxybutyryl-CoA 93.1 0.11 2.3E-06 52.9 4.4 33 158-190 4-36 (287)
370 PRK09260 3-hydroxybutyryl-CoA 93.0 0.11 2.4E-06 52.8 4.3 33 158-190 2-34 (288)
371 PRK07530 3-hydroxybutyryl-CoA 92.9 0.13 2.8E-06 52.4 4.8 33 158-190 5-37 (292)
372 PLN02507 glutathione reductase 92.9 0.19 4.1E-06 55.3 6.3 36 157-192 203-238 (499)
373 PF01262 AlaDh_PNT_C: Alanine 92.8 0.16 3.5E-06 47.2 4.8 34 157-190 20-53 (168)
374 PRK05708 2-dehydropantoate 2-r 92.7 0.15 3.2E-06 52.3 4.9 33 157-189 2-34 (305)
375 PRK06522 2-dehydropantoate 2-r 92.5 0.15 3.1E-06 52.1 4.5 32 159-190 2-33 (304)
376 PRK06116 glutathione reductase 92.5 0.22 4.7E-06 54.1 6.1 36 157-192 167-202 (450)
377 PRK12921 2-dehydropantoate 2-r 92.5 0.15 3.3E-06 52.1 4.5 30 159-188 2-31 (305)
378 PF13738 Pyr_redox_3: Pyridine 92.2 0.15 3.3E-06 48.4 4.0 35 156-190 166-200 (203)
379 COG1902 NemA NADH:flavin oxido 92.1 0.05 1.1E-06 56.8 0.5 60 14-102 278-337 (363)
380 PRK06035 3-hydroxyacyl-CoA deh 92.1 0.16 3.6E-06 51.6 4.2 33 158-190 4-36 (291)
381 COG1004 Ugd Predicted UDP-gluc 92.1 0.17 3.6E-06 52.7 4.2 33 158-190 1-33 (414)
382 KOG3923 D-aspartate oxidase [A 91.8 0.15 3.3E-06 50.8 3.4 51 387-452 152-202 (342)
383 PRK14618 NAD(P)H-dependent gly 91.8 0.23 5.1E-06 51.4 5.1 33 158-190 5-37 (328)
384 PRK14619 NAD(P)H-dependent gly 91.8 0.23 5E-06 51.0 5.0 34 157-190 4-37 (308)
385 PRK08229 2-dehydropantoate 2-r 91.7 0.22 4.8E-06 51.8 4.8 33 158-190 3-35 (341)
386 PRK05808 3-hydroxybutyryl-CoA 91.6 0.2 4.3E-06 50.7 4.2 33 158-190 4-36 (282)
387 TIGR02354 thiF_fam2 thiamine b 91.5 0.26 5.6E-06 47.2 4.6 33 157-189 21-54 (200)
388 TIGR01438 TGR thioredoxin and 91.5 0.34 7.4E-06 53.1 6.2 32 158-189 181-212 (484)
389 cd05292 LDH_2 A subgroup of L- 91.5 0.24 5.2E-06 50.9 4.7 33 158-190 1-35 (308)
390 PRK04148 hypothetical protein; 91.4 0.2 4.3E-06 44.5 3.5 33 158-191 18-50 (134)
391 PRK06130 3-hydroxybutyryl-CoA 91.4 0.26 5.6E-06 50.7 4.9 33 158-190 5-37 (311)
392 PRK08268 3-hydroxy-acyl-CoA de 91.4 0.26 5.5E-06 54.3 5.0 35 157-191 7-41 (507)
393 PTZ00318 NADH dehydrogenase-li 91.3 0.36 7.7E-06 52.0 6.0 59 158-237 174-246 (424)
394 PRK06719 precorrin-2 dehydroge 91.3 0.31 6.6E-06 44.8 4.7 33 156-188 12-44 (157)
395 PRK11064 wecC UDP-N-acetyl-D-m 91.2 0.22 4.8E-06 53.4 4.2 34 158-191 4-37 (415)
396 TIGR03026 NDP-sugDHase nucleot 91.2 0.23 4.9E-06 53.3 4.3 33 159-191 2-34 (411)
397 COG1748 LYS9 Saccharopine dehy 91.1 0.27 5.8E-06 51.7 4.6 32 158-189 2-34 (389)
398 cd01080 NAD_bind_m-THF_DH_Cycl 91.1 0.33 7.2E-06 45.1 4.8 34 156-189 43-77 (168)
399 COG1252 Ndh NADH dehydrogenase 91.1 0.25 5.4E-06 52.3 4.4 61 157-238 155-228 (405)
400 PLN02545 3-hydroxybutyryl-CoA 91.0 0.29 6.2E-06 49.9 4.7 33 158-190 5-37 (295)
401 TIGR01763 MalateDH_bact malate 91.0 0.32 7E-06 49.8 5.0 33 158-190 2-35 (305)
402 TIGR00518 alaDH alanine dehydr 90.7 0.33 7.1E-06 51.2 4.9 34 157-190 167-200 (370)
403 PRK14620 NAD(P)H-dependent gly 90.7 0.3 6.6E-06 50.5 4.6 32 159-190 2-33 (326)
404 PF03446 NAD_binding_2: NAD bi 90.7 0.36 7.9E-06 44.5 4.6 33 158-190 2-34 (163)
405 PRK12831 putative oxidoreducta 90.5 0.34 7.3E-06 52.9 5.0 35 156-190 280-314 (464)
406 PRK00066 ldh L-lactate dehydro 90.5 0.43 9.4E-06 49.1 5.5 36 155-190 4-41 (315)
407 PTZ00153 lipoamide dehydrogena 90.3 0.37 7.9E-06 54.7 5.1 37 157-193 312-348 (659)
408 PRK07531 bifunctional 3-hydrox 90.2 0.35 7.6E-06 53.2 4.8 33 158-190 5-37 (495)
409 COG0771 MurD UDP-N-acetylmuram 90.0 0.39 8.4E-06 51.5 4.7 36 157-192 7-42 (448)
410 PRK00094 gpsA NAD(P)H-dependen 90.0 0.39 8.5E-06 49.5 4.7 33 158-190 2-34 (325)
411 KOG1335 Dihydrolipoamide dehyd 89.9 0.27 5.9E-06 50.7 3.3 61 157-238 211-271 (506)
412 PRK15317 alkyl hydroperoxide r 89.9 0.4 8.7E-06 53.1 5.0 35 157-191 351-385 (517)
413 PRK12549 shikimate 5-dehydroge 89.8 0.43 9.3E-06 48.4 4.7 34 157-190 127-161 (284)
414 TIGR03143 AhpF_homolog putativ 89.8 0.39 8.5E-06 53.6 4.8 35 157-191 143-177 (555)
415 PTZ00082 L-lactate dehydrogena 89.8 0.54 1.2E-05 48.6 5.5 35 157-191 6-41 (321)
416 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.7 0.35 7.7E-06 53.1 4.3 34 158-191 6-39 (503)
417 PRK02106 choline dehydrogenase 89.6 0.48 1.1E-05 53.0 5.4 37 155-191 3-40 (560)
418 PRK04308 murD UDP-N-acetylmura 89.6 0.52 1.1E-05 51.1 5.5 36 157-192 5-40 (445)
419 PRK09424 pntA NAD(P) transhydr 89.6 0.4 8.7E-06 52.4 4.5 35 156-190 164-198 (509)
420 cd01075 NAD_bind_Leu_Phe_Val_D 89.6 0.51 1.1E-05 45.2 4.8 34 157-190 28-61 (200)
421 cd00401 AdoHcyase S-adenosyl-L 89.5 0.47 1E-05 50.5 4.9 35 156-190 201-235 (413)
422 COG0686 Ald Alanine dehydrogen 89.4 0.41 8.8E-06 48.1 4.0 43 156-198 167-217 (371)
423 PRK02472 murD UDP-N-acetylmura 89.4 0.47 1E-05 51.4 5.0 34 157-190 5-38 (447)
424 PRK01710 murD UDP-N-acetylmura 89.3 0.44 9.6E-06 51.9 4.7 34 157-190 14-47 (458)
425 PF02254 TrkA_N: TrkA-N domain 89.3 0.51 1.1E-05 40.5 4.2 31 160-190 1-31 (116)
426 PF00670 AdoHcyase_NAD: S-aden 89.1 0.48 1E-05 43.5 4.0 35 156-190 22-56 (162)
427 KOG2755 Oxidoreductase [Genera 89.1 0.28 6E-06 48.1 2.5 39 159-197 1-41 (334)
428 TIGR01292 TRX_reduct thioredox 89.1 0.55 1.2E-05 47.5 4.9 34 157-190 141-174 (300)
429 PF00899 ThiF: ThiF family; I 89.0 0.64 1.4E-05 41.3 4.8 34 157-190 2-36 (135)
430 COG1251 NirB NAD(P)H-nitrite r 89.0 0.36 7.8E-06 53.9 3.7 54 389-443 190-243 (793)
431 PRK12770 putative glutamate sy 89.0 0.53 1.2E-05 49.2 4.9 34 157-190 172-206 (352)
432 PRK08306 dipicolinate synthase 88.9 0.54 1.2E-05 48.0 4.7 35 156-190 151-185 (296)
433 KOG1346 Programmed cell death 88.7 0.43 9.2E-06 49.7 3.7 56 387-443 394-449 (659)
434 PRK07417 arogenate dehydrogena 88.7 0.5 1.1E-05 47.8 4.3 32 159-190 2-33 (279)
435 PRK15057 UDP-glucose 6-dehydro 88.6 0.52 1.1E-05 50.0 4.5 32 159-191 2-33 (388)
436 PRK12475 thiamine/molybdopteri 88.5 0.59 1.3E-05 48.6 4.7 34 157-190 24-58 (338)
437 TIGR01915 npdG NADPH-dependent 88.5 0.59 1.3E-05 45.4 4.5 32 159-190 2-34 (219)
438 cd05311 NAD_bind_2_malic_enz N 88.3 0.66 1.4E-05 45.4 4.7 34 157-190 25-61 (226)
439 cd05291 HicDH_like L-2-hydroxy 88.3 0.63 1.4E-05 47.8 4.7 33 159-191 2-36 (306)
440 PRK04690 murD UDP-N-acetylmura 88.2 0.57 1.2E-05 51.1 4.6 34 157-190 8-41 (468)
441 PRK07688 thiamine/molybdopteri 88.2 0.67 1.4E-05 48.3 4.9 35 156-190 23-58 (339)
442 PRK00421 murC UDP-N-acetylmura 88.1 0.55 1.2E-05 51.1 4.4 36 156-191 6-42 (461)
443 PLN02353 probable UDP-glucose 88.1 0.57 1.2E-05 51.0 4.5 33 158-190 2-36 (473)
444 PRK12548 shikimate 5-dehydroge 88.0 0.74 1.6E-05 46.8 5.0 34 157-190 126-160 (289)
445 COG1250 FadB 3-hydroxyacyl-CoA 88.0 0.58 1.2E-05 47.7 4.1 33 158-190 4-36 (307)
446 cd05191 NAD_bind_amino_acid_DH 87.8 0.97 2.1E-05 36.7 4.7 32 157-188 23-55 (86)
447 TIGR02853 spore_dpaA dipicolin 87.8 0.67 1.5E-05 47.1 4.5 35 156-190 150-184 (287)
448 PRK06223 malate dehydrogenase; 87.8 0.73 1.6E-05 47.2 4.9 34 158-191 3-37 (307)
449 PRK03369 murD UDP-N-acetylmura 87.7 0.63 1.4E-05 51.1 4.6 33 157-189 12-44 (488)
450 PRK11730 fadB multifunctional 87.6 0.55 1.2E-05 54.0 4.2 34 158-191 314-347 (715)
451 PRK15116 sulfur acceptor prote 87.6 0.81 1.8E-05 45.8 4.8 36 156-191 29-65 (268)
452 PF00056 Ldh_1_N: lactate/mala 87.5 0.96 2.1E-05 40.7 4.9 33 158-190 1-36 (141)
453 TIGR01505 tartro_sem_red 2-hyd 87.4 0.57 1.2E-05 47.6 3.8 32 159-190 1-32 (291)
454 KOG3851 Sulfide:quinone oxidor 87.3 0.7 1.5E-05 46.7 4.1 53 384-436 234-289 (446)
455 PF13478 XdhC_C: XdhC Rossmann 87.2 0.76 1.6E-05 41.1 4.0 32 160-191 1-32 (136)
456 TIGR02356 adenyl_thiF thiazole 87.2 0.89 1.9E-05 43.6 4.8 35 156-190 20-55 (202)
457 cd01078 NAD_bind_H4MPT_DH NADP 87.1 0.91 2E-05 43.1 4.8 33 157-189 28-61 (194)
458 COG3634 AhpF Alkyl hydroperoxi 87.1 0.55 1.2E-05 47.9 3.3 35 156-190 353-387 (520)
459 cd02929 TMADH_HD_FMN Trimethyl 87.1 0.21 4.5E-06 52.7 0.4 66 14-108 279-344 (370)
460 cd01487 E1_ThiF_like E1_ThiF_l 87.0 0.93 2E-05 42.3 4.7 32 159-190 1-33 (174)
461 TIGR02437 FadB fatty oxidation 87.0 0.63 1.4E-05 53.5 4.2 35 157-191 313-347 (714)
462 TIGR00936 ahcY adenosylhomocys 86.8 0.87 1.9E-05 48.4 4.8 35 156-190 194-228 (406)
463 cd05293 LDH_1 A subgroup of L- 86.7 1 2.2E-05 46.4 5.1 34 157-190 3-38 (312)
464 PRK03806 murD UDP-N-acetylmura 86.6 0.94 2E-05 49.0 5.2 35 157-191 6-40 (438)
465 PRK00141 murD UDP-N-acetylmura 86.6 0.82 1.8E-05 50.0 4.7 34 157-190 15-48 (473)
466 cd01483 E1_enzyme_family Super 86.5 1 2.2E-05 40.4 4.5 32 159-190 1-33 (143)
467 PRK12778 putative bifunctional 86.3 0.87 1.9E-05 52.9 4.9 34 157-190 570-604 (752)
468 PTZ00117 malate dehydrogenase; 86.3 1 2.3E-05 46.4 5.0 34 157-190 5-39 (319)
469 KOG2304 3-hydroxyacyl-CoA dehy 86.3 0.81 1.8E-05 43.9 3.8 36 156-191 10-45 (298)
470 TIGR00507 aroE shikimate 5-deh 86.3 1 2.2E-05 45.3 4.8 34 157-190 117-150 (270)
471 TIGR00561 pntA NAD(P) transhyd 86.2 0.87 1.9E-05 49.8 4.6 34 157-190 164-197 (511)
472 PRK08644 thiamine biosynthesis 86.1 1.1 2.4E-05 43.3 4.8 35 156-190 27-62 (212)
473 TIGR02355 moeB molybdopterin s 85.9 1.1 2.4E-05 44.2 4.8 34 157-190 24-58 (240)
474 PRK02006 murD UDP-N-acetylmura 85.8 1 2.2E-05 49.6 5.0 34 157-190 7-40 (498)
475 COG2084 MmsB 3-hydroxyisobutyr 85.8 0.97 2.1E-05 45.6 4.3 34 158-191 1-34 (286)
476 PRK01368 murD UDP-N-acetylmura 85.6 0.99 2.1E-05 49.1 4.7 32 157-189 6-37 (454)
477 TIGR02441 fa_ox_alpha_mit fatt 85.6 0.79 1.7E-05 52.8 4.1 34 158-191 336-369 (737)
478 PRK07502 cyclohexadienyl dehyd 85.5 1.1 2.5E-05 45.8 4.9 33 158-190 7-41 (307)
479 PRK05476 S-adenosyl-L-homocyst 85.5 1.1 2.4E-05 47.9 4.8 35 156-190 211-245 (425)
480 PRK09496 trkA potassium transp 85.3 0.94 2E-05 49.1 4.3 33 159-191 2-34 (453)
481 PRK15461 NADH-dependent gamma- 85.3 0.95 2.1E-05 46.2 4.1 32 159-190 3-34 (296)
482 TIGR01809 Shik-DH-AROM shikima 85.2 1.2 2.6E-05 45.1 4.8 34 157-190 125-159 (282)
483 PRK00258 aroE shikimate 5-dehy 85.2 1.2 2.7E-05 44.9 4.8 34 157-190 123-157 (278)
484 cd01339 LDH-like_MDH L-lactate 85.1 1 2.2E-05 46.1 4.2 31 160-190 1-32 (300)
485 COG1893 ApbA Ketopantoate redu 85.0 0.99 2.1E-05 46.3 4.1 34 158-191 1-34 (307)
486 PRK01390 murD UDP-N-acetylmura 84.9 0.97 2.1E-05 49.2 4.3 32 158-189 10-41 (460)
487 PRK14027 quinate/shikimate deh 84.9 1.3 2.8E-05 44.9 4.8 34 157-190 127-161 (283)
488 TIGR00872 gnd_rel 6-phosphoglu 84.8 1.2 2.5E-05 45.6 4.5 32 159-190 2-33 (298)
489 PRK11559 garR tartronate semia 84.7 1.1 2.5E-05 45.5 4.4 33 158-190 3-35 (296)
490 PRK03803 murD UDP-N-acetylmura 84.7 1.1 2.3E-05 48.7 4.4 33 158-190 7-39 (448)
491 PRK12810 gltD glutamate syntha 84.5 2.3 5E-05 46.5 6.9 51 392-442 335-399 (471)
492 cd01065 NAD_bind_Shikimate_DH 84.5 1.5 3.3E-05 39.6 4.8 34 157-190 19-53 (155)
493 PRK05690 molybdopterin biosynt 84.5 1.4 3E-05 43.6 4.8 35 156-190 31-66 (245)
494 PRK12550 shikimate 5-dehydroge 84.5 1.4 3E-05 44.3 4.8 33 158-190 123-156 (272)
495 PRK08328 hypothetical protein; 84.4 1.4 3E-05 43.2 4.7 34 157-190 27-61 (231)
496 TIGR02440 FadJ fatty oxidation 84.3 1 2.2E-05 51.7 4.2 33 158-190 305-338 (699)
497 PRK12779 putative bifunctional 84.3 1.2 2.7E-05 52.8 5.0 34 157-190 447-480 (944)
498 TIGR03736 PRTRC_ThiF PRTRC sys 84.3 1.4 3E-05 43.5 4.5 34 156-189 10-54 (244)
499 PRK11199 tyrA bifunctional cho 84.2 1.3 2.8E-05 46.8 4.7 35 156-190 97-132 (374)
500 PTZ00142 6-phosphogluconate de 84.0 1.1 2.4E-05 48.8 4.1 34 158-191 2-35 (470)
No 1
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=2.4e-50 Score=440.37 Aligned_cols=420 Identities=69% Similarity=1.210 Sum_probs=345.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
+||+|||||++||++|..|+++|++|+|+||++.+||+++++..+||.||.|++.+.++.+...++.+.+.+..+|..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 68999999999999999999999999999999999999999999999999999999887655566677888888887777
Q ss_pred EeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhh
Q 008069 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLE 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (579)
..+......+.+++|..+.++.+++++.+++.+.+|++.+++++|++.....+..+.......+..+..+...+...+..
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLA 160 (493)
T ss_pred ccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhh
Confidence 66665566777888888999999999999999999999999999999887776644332111112222222222222222
Q ss_pred hhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcCccceeCCChHHHHHHHHHHHH
Q 008069 318 CLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLA 397 (579)
Q Consensus 318 ~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~gG~~~l~~aL~~~l~ 397 (579)
...+..+..+++.+++++++.++.++.++...+.+++...+.++|+.+....+.....+++++|.||+..++++|.+.++
T Consensus 161 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~~~ 240 (493)
T TIGR02730 161 CLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKGLE 240 (493)
T ss_pred hhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHHHH
Confidence 22334455689999999999999999999887776664445777776665554444457889999999999999999999
Q ss_pred HcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCeEEEEEe
Q 008069 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMG 477 (579)
Q Consensus 398 ~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg 477 (579)
++|++|+++++|++|..+++++.+|++.+|++++||.||+|++++.++.+|++++.+++..+...+.++++++.+++|++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~ 320 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLG 320 (493)
T ss_pred HCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEE
Confidence 99999999999999999989999999999999999999999999999888998777776655566677888899999999
Q ss_pred ecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCChhhHHHHHHHHHHH
Q 008069 478 VKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADE 557 (579)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~~~y~~~ke~~~~~ 557 (579)
++.+..|.....|++++ ++|+.+..+.+++|+++||..||+++|+|+++++++++.+++.|.+++.++|++.|++++++
T Consensus 321 l~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~ 399 (493)
T TIGR02730 321 VKADVLPPGTECHHILL-EDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAER 399 (493)
T ss_pred ecCccCCCCCCccEEec-chhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHH
Confidence 99876554444466665 34666556667899999999999999999999999998888899988888999999999999
Q ss_pred HHHHHHHhhCCCCCCCeEEEEC
Q 008069 558 IINRLENKLFPGLKQSIAFREV 579 (579)
Q Consensus 558 il~~le~~~~P~l~~~I~~~~v 579 (579)
+++.|+ +++|+|+++|+++++
T Consensus 400 il~~l~-~~~p~l~~~I~~~~~ 420 (493)
T TIGR02730 400 IIDRLE-KIFPGLDSAIDYKEV 420 (493)
T ss_pred HHHHHH-HHCCChhhcEEEEEe
Confidence 999999 789999999999875
No 2
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=6.3e-43 Score=382.27 Aligned_cols=405 Identities=25% Similarity=0.353 Sum_probs=300.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
.||+|||||++||+||..|+++|++|+|+||++.+||++++++++||.||.|+|++.++.+.. ...++++++|+.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~---~~~~~~~~lg~~~~ 78 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGG---IHARIFRELGIPLP 78 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCC---HHHHHHHHcCCCCc
Confidence 689999999999999999999999999999999999999999999999999999998764432 35677888998754
Q ss_pred -EeeCCCeEEEEcCCC-ceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhc----cchhhHHHhhh
Q 008069 238 -VIPDPTTVHFHLPND-LSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKS----LEEPIYLFGQF 311 (579)
Q Consensus 238 -~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 311 (579)
....+....+.+++| ..+.++.|.+++.+++.+.+|.+.. |+....+.+.......... ...+..+....
T Consensus 79 ~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (492)
T TIGR02733 79 EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLV 154 (492)
T ss_pred ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Confidence 222233445566777 5677889999999999999988743 4444444443322111110 01111111000
Q ss_pred hcChhhhhHHhhhccccHHHHHHHh--cCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHh-hhhcCccceeCCChHHH
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKY--IKDPQLLSFIDAECFIVSTINALQTPMINASMVLC-DRHFGGINYPVGGVGGI 388 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~p~gG~~~l 388 (579)
............+...++.++++++ +.++.++.+++..+....+..+.+.++.+..+.+. .....|.++++||++.|
T Consensus 155 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~l 234 (492)
T TIGR02733 155 SALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQTL 234 (492)
T ss_pred HhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHHH
Confidence 0000001112223457899999987 88999999998776555555566667666543322 12235778899999999
Q ss_pred HHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC-----cEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHH
Q 008069 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQK 463 (579)
Q Consensus 389 ~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG-----~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~ 463 (579)
+++|++.++++|++|+++++|++|..+++++.+|++.+| +++.||.||+|+++..+. +|++++.+++...+.++
T Consensus 235 ~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~-~ll~~~~~~~~~~~~~~ 313 (492)
T TIGR02733 235 SDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLL-ELLGPLGLPPGYRKRLK 313 (492)
T ss_pred HHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHH-HhcCcccCCHHHHHHHh
Confidence 999999999999999999999999999888878877665 578999999999998775 58876677777666777
Q ss_pred hhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCC
Q 008069 464 LYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLA 543 (579)
Q Consensus 464 ~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~ 543 (579)
.+.++++.+++|+++++...+.+...|..... .+.+++|++.++ .||+++|+|+++++++++.++.+|..++
T Consensus 314 ~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~~~~~~~~~~~ 385 (492)
T TIGR02733 314 KLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS-------DHQGSLFVSISQ-EGDGRAPQGEATLIASSFTDTNDWSSLD 385 (492)
T ss_pred cCCCCCceEEEEEeecccccCCCCCcceeecc-------CCCceEEEEeCC-ccccCCCCCceEEEEEcCCCHHHHcCCC
Confidence 78888889999999998543322211222111 112368898865 5889999999999999988888998766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEC
Q 008069 544 QKDYDAKKELVADEIINRLENKLFPGLKQSIAFREV 579 (579)
Q Consensus 544 ~~~y~~~ke~~~~~il~~le~~~~P~l~~~I~~~~v 579 (579)
+++|++.|++++++++++|+ +.+|+|+++|+++++
T Consensus 386 ~~~y~~~k~~~~~~il~~le-~~~p~l~~~i~~~~v 420 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLG-HYFDLLEENWVHVEL 420 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCccccEEEEEc
Confidence 78899999999999999999 789999999999875
No 3
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=3.5e-43 Score=385.35 Aligned_cols=403 Identities=25% Similarity=0.368 Sum_probs=310.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCc----
Q 008069 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE---- 235 (579)
Q Consensus 160 v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~---- 235 (579)
|+|||||++||+||.+|+++|++|+|+||++.+||+++|+..+||.||.|++++.+ ...+.++++.+|.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~------~~~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM------PEALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc------ccHHHHHHHHcCCChhhe
Confidence 69999999999999999999999999999999999999999999999999999863 24567788888854
Q ss_pred eeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh-hhhhhhccchhhHHHhhhhcC
Q 008069 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNAL-NSLELKSLEEPIYLFGQFFKR 314 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 314 (579)
++..+.+....+.+++|..+.++.+.+.+.+++.+.+|.+.+.+.+|++.....+... ..+...++..+.. +...
T Consensus 75 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 150 (502)
T TIGR02734 75 VELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRD----LLRA 150 (502)
T ss_pred EEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHH----HHhH
Confidence 3444444445666788888999999999999999999999999999998887776522 1111111111111 1110
Q ss_pred hhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcCccceeCCChHHHHHHHHH
Q 008069 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAK 394 (579)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~gG~~~l~~aL~~ 394 (579)
. .......+...++.+++++++.++.++.++...+.+.+ ..+.+.++.+..+... .+.++.++|.||+..++++|.+
T Consensus 151 ~-~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~~-~~~~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 151 D-LPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG-GNPFRTPSIYALISAL-EREWGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred h-hHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec-cCcccchHHHHHHHHH-HhhceEEEcCCCHHHHHHHHHH
Confidence 0 00112234567899999999999999999876543433 5667777666554433 3346888999999999999999
Q ss_pred HHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCeEEE
Q 008069 395 GLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSI 474 (579)
Q Consensus 395 ~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v 474 (579)
.++++|++|+++++|++|..+++++++|++.+|+++.||.||+|+++..++..|++++..++...+..++++++.|.+++
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~ 307 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVL 307 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEE
Confidence 99999999999999999999888888999999988999999999999888878887655554444555667778899999
Q ss_pred EEeecCCc-CCCCCCccceeeccchhhh-----c---C-CcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCCh
Q 008069 475 HMGVKAEV-LPPDTDCHHFVLEDDWNRL-----E---E-PYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQ 544 (579)
Q Consensus 475 ~lg~~~~~-~~~~~~~~~~~~~~~~~~~-----~---~-p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~ 544 (579)
|++++... ..+...+|++++.++|+.. . - ..+++|+++||..||+++|+|+++++++++++++.| +.
T Consensus 308 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~---~~ 384 (502)
T TIGR02734 308 YFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGT---AD 384 (502)
T ss_pred EEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCC---CC
Confidence 99999421 1133445677776666531 0 0 135799999999999999999999999998764312 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-CCCCCCCeEEEEC
Q 008069 545 KDYDAKKELVADEIINRLENKL-FPGLKQSIAFREV 579 (579)
Q Consensus 545 ~~y~~~ke~~~~~il~~le~~~-~P~l~~~I~~~~v 579 (579)
++|++.|++++++++++|+ +. +|+|+++|+++++
T Consensus 385 ~~~~~~k~~~~~~il~~l~-~~~~p~l~~~i~~~~~ 419 (502)
T TIGR02734 385 VDWSVEGPRYRDRILAYLE-ERAIPGLRDRIVVERT 419 (502)
T ss_pred CCcHHHHHHHHHHHHHHHH-HhcCCChhHheEEEEE
Confidence 5688889999999999999 65 9999999999874
No 4
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=353.62 Aligned_cols=413 Identities=35% Similarity=0.513 Sum_probs=297.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeE-EeeCCeeeccccccccCCCCCCChHHHHHHHHHcC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY-YERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t-~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g 233 (579)
+..||++|||+|+.||.||.+|+|.|.+|+|+||....||.+.+ +.++||+|+.++..+....+.+... -.+++.|
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~---~~l~r~g 88 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQE---LELKRHG 88 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhccccccc---chHhhhh
Confidence 45799999999999999999999999999999999887776654 4589999999887776655533222 1233334
Q ss_pred CceeEeeC----CC---------------------eEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 008069 234 CEMEVIPD----PT---------------------TVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWK 288 (579)
Q Consensus 234 ~~~~~~~~----~~---------------------~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~ 288 (579)
..+..... +. ...|..+| ......+++++.++...++...++.. +.-.++.
T Consensus 89 l~l~~r~p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~d---a~~~peye~fl~~~~~~~~pl~d~~~-~~~~~~~ 164 (561)
T KOG4254|consen 89 LRLHERSPCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPD---ARAYPEYEKFLVELYGAIDPLLDAAP-ADPPLFI 164 (561)
T ss_pred hhhccCCCccccchhhccchhhhhhccccccchhhhhhhcCCc---cccchhHHHHHHHHHhccchhhhccc-cccchhh
Confidence 33321110 00 11111111 22334455555555544443332221 1112222
Q ss_pred HHHHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhc--CCHHHHHHHhhhhhhhhcCCCCCchHHHH
Q 008069 289 IFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYI--KDPQLLSFIDAECFIVSTINALQTPMINA 366 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 366 (579)
...............|+.+..++...+...+....+++.+ ..+.+++ +++.+..+++..++...+.....++....
T Consensus 165 ~~~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~~~ap~~--k~~~~~fesk~~ka~l~tDavi~~~asv~~pgt~yvll 242 (561)
T KOG4254|consen 165 HGLLLVLYTLASTYAPLLLAGFIKMKPLGALYELLLAPIS--KVLNDWFESKDLKATLATDAVIGLLASVHTPGTGYVLL 242 (561)
T ss_pred hhhhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHHHhcchh--hHHhhhhhccchhhhhhHHHHHHhhcccCCCCcHHHHH
Confidence 2222222223333445555556666665554444444333 3444444 56677778888888888777777776654
Q ss_pred HHHH--hhhhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 367 SMVL--CDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 367 ~~~~--~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
...+ .+++.++|.||.||+++++.++++.++++|++|.+++.|++|..++|++.||+++||++++++.||+++++|.|
T Consensus 243 h~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 243 HHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred HHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHH
Confidence 4444 67788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCChHHHHHHHhhc--------cCCCeEE---------EEEeecCCcCCCCCCccceeeccchhhhcCCcce
Q 008069 445 FGKLLKGEQLPKEEENFQKLYV--------KAPSFLS---------IHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGS 507 (579)
Q Consensus 445 ~~~Ll~~~~lp~~~~~~~~~~~--------~~~s~~~---------v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 507 (579)
+.+|++++.+|.+. .++... ..++++. -|.+++.....+++..||..+.+.++.+.++++.
T Consensus 323 f~kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pv 400 (561)
T KOG4254|consen 323 FEKLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPV 400 (561)
T ss_pred HHHhCCCccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCe
Confidence 99999999999875 222222 2233332 2444444444455667778888888888888999
Q ss_pred EEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEC
Q 008069 508 IFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREV 579 (579)
Q Consensus 508 i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l~~~I~~~~v 579 (579)
|++++||..||+++|+|+|++.++++..+++|++....+|+++|+++++++++.++ +++|||+++|+..+|
T Consensus 401 I~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie-~l~Pgfsssv~~~dv 471 (561)
T KOG4254|consen 401 IELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIE-KLAPGFSSSVESYDV 471 (561)
T ss_pred EEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHH-HHcCCccceEEEEec
Confidence 99999999999999999999999999988999998777999999999999999999 999999999998875
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9e-40 Score=354.73 Aligned_cols=395 Identities=30% Similarity=0.461 Sum_probs=287.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcC-Cc
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG-CE 235 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g-~~ 235 (579)
.+||||||||++||+||.+|+++|++|+|+||++.+||++++++..||+||+|++++..... . .++++++ +.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~------~-~~~~~l~~l~ 75 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDP------G-PLFRELGNLD 75 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCch------H-HHHHHhccCc
Confidence 58999999999999999999999999999999999999999999999999999988875332 1 4444455 22
Q ss_pred ---eeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 008069 236 ---MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (579)
Q Consensus 236 ---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
+...+.+......+++|..+.+.++++.+...+...+|.+.+.+.++.....+.++.+........... +....
T Consensus 76 ~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (487)
T COG1233 76 ADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSE---LLLVP 152 (487)
T ss_pred ccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhh---hhhcc
Confidence 222233456667778899999999999999999999999999998888866665554443222211111 00112
Q ss_pred cChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcCccceeCCChHHHHHHH
Q 008069 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSL 392 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~gG~~~l~~aL 392 (579)
........+..+...++.+++..+|.++.++..+.....+.+ ..+...++.+ .+.....+..|+++|+||++.++++|
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~-~~~~~~~~~~G~~~p~GG~~al~~aL 230 (487)
T COG1233 153 DTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALY-LLLSHLGLSGGVFYPRGGMGALVDAL 230 (487)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHH-HHHHHhcccCCeeeeeCCHHHHHHHH
Confidence 223334445556677888999888999999988877544443 4455544333 33333445579999999999999999
Q ss_pred HHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCeE
Q 008069 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFL 472 (579)
Q Consensus 393 ~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~ 472 (579)
++.++++||+|+++++|++|.+++++.++++..+|+.+++|.||+++.+ .....+.+.. .. .+....+.+..+.+
T Consensus 231 ~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~~--~~--~~~~~~~~~~~~al 305 (487)
T COG1233 231 AELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGEA--RR--PRYRGSYLKSLSAL 305 (487)
T ss_pred HHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhhh--hh--hccccchhhhhHHH
Confidence 9999999999999999999999999877788888877999999999998 3333343321 11 12233444566788
Q ss_pred EEEEeecCCcCCCCCCcccee-eccchhhhcCCcc-------eEEEEcCCCCCCCCCCCCeeE-EEEEeccchhhhcCCC
Q 008069 473 SIHMGVKAEVLPPDTDCHHFV-LEDDWNRLEEPYG-------SIFLSIPTVLDSSLAPEGHHI-LHIFTICSIEDWEGLA 543 (579)
Q Consensus 473 ~v~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~-------~i~~~~~s~~dp~~aP~G~~~-l~~~~~~~~~~w~~~~ 543 (579)
..+++++.. .++.. .|+.+ +.+.++.++..+. ++|+++||..||++||+|++. +..+.+.+ .
T Consensus 306 ~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~-------~ 376 (487)
T COG1233 306 SLYLGLKGD-LLPLA-HHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVP-------S 376 (487)
T ss_pred HhccCCCCC-Ccchh-hcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecC-------c
Confidence 899999886 33333 34444 4443434433322 589999999999999999982 22233222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEC
Q 008069 544 QKDYDAKKELVADEIINRLENKLFPGLKQSIAFREV 579 (579)
Q Consensus 544 ~~~y~~~ke~~~~~il~~le~~~~P~l~~~I~~~~v 579 (579)
..+|++.|+++.+. ++.++ +++|+++++|+.+++
T Consensus 377 ~~~~~~~~~~~~~~-~~~~~-~~~p~~~~~iv~~~~ 410 (487)
T COG1233 377 LGDYDELKESLADA-IDALE-ELAPGLRDRIVAREV 410 (487)
T ss_pred CCChHHHHHHHHHH-HHHHh-hcCCCcccceeEEEE
Confidence 34688999999999 88888 899999999987653
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-26 Score=248.86 Aligned_cols=355 Identities=19% Similarity=0.204 Sum_probs=231.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCceeE
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEV 238 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~~ 238 (579)
+|+|||||++||+||+.|+++|++|+|+|+++.+||++.++..+|+.+|.|.|.+.+. ...+.++++++|+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~-----~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKS-----DEALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccc-----cHHHHHHHHHcCCCCce
Confidence 6899999999999999999999999999999999999999999999999999998752 23578999999986554
Q ss_pred eeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhhh
Q 008069 239 IPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLEC 318 (579)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (579)
........+.+. |..+.+ .+...+ . .++... + .+........+. .. . .
T Consensus 76 ~~~~~~~~~~~~-~~~~~~-~~~~~~----~-~~~~~~--~---~~~~~~~~~~~~---~~----------~-------~ 123 (434)
T PRK07233 76 RWRETKTGYYVD-GKLYPL-GTPLEL----L-RFPHLS--L---IDKFRLGLLTLL---AR----------R-------I 123 (434)
T ss_pred eeccCceEEEEC-CeEecC-CCHHHH----H-cCCCCC--H---HHHHHhHHHHHh---hh----------h-------c
Confidence 433322233333 222221 111111 0 111100 0 000000000000 00 0 0
Q ss_pred hHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhh-------cCccceeCCChHHHHHH
Q 008069 319 LTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRH-------FGGINYPVGGVGGIAKS 391 (579)
Q Consensus 319 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~p~gG~~~l~~a 391 (579)
.....+...++.+++.+.+.++.++.++...+....+..+.+.++......+.... ...+.+|+||++.++++
T Consensus 124 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 203 (434)
T PRK07233 124 KDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDA 203 (434)
T ss_pred ccccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHH
Confidence 00112235678899998887777777777766666667777777654332221110 12367899999999999
Q ss_pred HHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCe
Q 008069 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSF 471 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~ 471 (579)
|++.+++.|++|+++++|++|..++++++++. .+|++++||.||+|+++..+ ..|++. ++...++..+.+.+ .+.
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~~~~-~~ll~~--~~~~~~~~~~~~~~-~~~ 278 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPPPIL-ARLVPD--LPADVLARLRRIDY-QGV 278 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCHHHH-HhhcCC--CcHHHHhhhcccCc-cce
Confidence 99999999999999999999998888877555 56778999999999998765 467753 55554455555554 456
Q ss_pred EEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCChhhHHHHH
Q 008069 472 LSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKK 551 (579)
Q Consensus 472 ~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~~~y~~~k 551 (579)
++++++++++..+ .+++.+.+ -+.++..+ ..++..+|+.+|+|++++++..+.+..++ .|...+
T Consensus 279 ~~~~l~~~~~~~~----~~~~~~~~----~~~~~~~~--~~~s~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~ 342 (434)
T PRK07233 279 VCMVLKLRRPLTD----YYWLNIND----PGAPFGGV--IEHTNLVPPERYGGEHLVYLPKYLPGDHP------LWQMSD 342 (434)
T ss_pred EEEEEEecCCCCC----CceeeecC----CCCCcceE--EEecccCCccccCCceEEEEeeecCCCCh------hhcCCH
Confidence 6889999886522 12222111 01233222 23456788888888887655444332221 244466
Q ss_pred HHHHHHHHHHHHHhhCCCCCC
Q 008069 552 ELVADEIINRLENKLFPGLKQ 572 (579)
Q Consensus 552 e~~~~~il~~le~~~~P~l~~ 572 (579)
+++.+.+++.|+ +++|+++.
T Consensus 343 ~~~~~~~~~~L~-~~~p~~~~ 362 (434)
T PRK07233 343 EELLDRFLSYLR-KMFPDFDR 362 (434)
T ss_pred HHHHHHHHHHHH-HhCCCCCh
Confidence 899999999999 89998853
No 7
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.95 E-value=1.3e-25 Score=244.11 Aligned_cols=355 Identities=15% Similarity=0.217 Sum_probs=227.2
Q ss_pred CccEEEECCChhHHHHHHHHHHc----CCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHc
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~ 232 (579)
++||+|||||++||+||+.|+++ |++|+|+|+.+++||++.|...+|+.+|.|+|++++.. ..+.++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~-----~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERK-----KSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCC-----hHHHHHHHHc
Confidence 47999999999999999999998 99999999999999999999999999999999998532 2378899999
Q ss_pred CCceeEeeCCCeEEEEc-CCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 233 GCEMEVIPDPTTVHFHL-PNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 233 g~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
|++...........+.+ .+|..+.++.....+.. ... ..+.......... +
T Consensus 77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~---~~~-------~~~~~~~~~~~~~------------------~ 128 (462)
T TIGR00562 77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVK---TGL-------FSLGGKLRAGMDF------------------I 128 (462)
T ss_pred CCCcccccCCCCceEEEECCCceecCCCChHHHhc---CCC-------CCchhhHHhhhhh------------------c
Confidence 98654433222222222 22444433332211110 000 0000000000000 0
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHH--HHHh------------hh----
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVLC------------DR---- 373 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~---- 373 (579)
.... .....++.+++++.+.++....++........+.++.+.++.... +... ..
T Consensus 129 ~~~~-------~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 201 (462)
T TIGR00562 129 RPAS-------PGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLP 201 (462)
T ss_pred cCCC-------CCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccC
Confidence 0000 011367888888888777667777666555444555544443211 0000 00
Q ss_pred ----------hcCc-cceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 374 ----------HFGG-INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 374 ----------~~~g-~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
..+. +..+.||++.+++.|++.+. .++|+++++|++|..++++++ |++++|+++.||.||+|+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 202 QGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYT-LELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred ccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEE-EEECCCcEEEcCEEEECCCHH
Confidence 0011 45689999999999999885 278999999999998877765 778888889999999999998
Q ss_pred HHHhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCC
Q 008069 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP 522 (579)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP 522 (579)
.+ ..|+++ ++....+.+.++.+.+ ..++.++++++.+..+.....++.+.+. ......+...|...|..+|
T Consensus 279 ~~-~~ll~~--~~~~~~~~l~~l~~~~-~~~v~l~~~~~~~~~~~~~~g~l~~~~~-----~~~~~~~i~~s~~~p~~~p 349 (462)
T TIGR00562 279 AA-AGLLSE--LSNSASSHLDKIHSPP-VANVNLGFPEGSVDGELEGFGFLISRSS-----KFAILGCIFTSKLFPNRAP 349 (462)
T ss_pred HH-HHHhcc--cCHHHHHHHhcCCCCc-eEEEEEEEchHHcCCCCCceEEEccCCC-----CCceEEEEEEccccCCcCC
Confidence 76 577764 6666666777777654 6688999987665433222233333211 1111233445666788899
Q ss_pred CCeeEEEEEeccch-hhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 008069 523 EGHHILHIFTICSI-EDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQ 572 (579)
Q Consensus 523 ~G~~~l~~~~~~~~-~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l~~ 572 (579)
+|++++++++.... .+| ++...+++.+.+++.|. ++++ ++.
T Consensus 350 ~g~~~l~~~~~g~~~~~~-------~~~~~ee~~~~v~~~L~-~~~g-i~~ 391 (462)
T TIGR00562 350 PGKTLLTAYIGGATDESI-------VDLSENEIINIVLRDLK-KVLN-INN 391 (462)
T ss_pred CCcEEEEEEeCCCCCccc-------cCCCHHHHHHHHHHHHH-HHhC-CCC
Confidence 99988887765321 112 22345789999999999 6763 543
No 8
>PLN02612 phytoene desaturase
Probab=99.95 E-value=1.5e-24 Score=239.65 Aligned_cols=368 Identities=17% Similarity=0.228 Sum_probs=226.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEe-eCCeeeccccccccCCCCCCChHHHHHHHHHcCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~ 234 (579)
...+|+|||||++||++|++|+++|++|+|+|+.+.+||.+.++. .+|+.+|.|+|++.+..+ .+.++++++|+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~-----~~~~ll~elG~ 166 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP-----NVQNLFGELGI 166 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCc-----hHHHHHHHhCC
Confidence 458999999999999999999999999999999999999999887 489999999999987543 37789999998
Q ss_pred ceeEeeCCCeEEEEcCC--CceE--EecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhh
Q 008069 235 EMEVIPDPTTVHFHLPN--DLSV--RVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQ 310 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~--g~~~--~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
............+.+++ +... .++. ..|.....+..++... ......+.......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----------~~P~~l~~~~~~l~~~----------~~ls~~~kl~~~~~ 225 (567)
T PLN02612 167 NDRLQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAPLNGIWAILRNN----------EMLTWPEKIKFAIG 225 (567)
T ss_pred cccceecccceEEEecCCCCceeeCcCch-----------hcCChhhhhHHHHhcC----------ccCCHHHHHHHHHh
Confidence 65543333333332221 1111 1110 0111111111111000 00000000000000
Q ss_pred hhcC-hhhhhHHhhhccccHHHHHHHhcCCHHHH-HHHhhhhhhhhcCCCCCchHHHHHHHHhh----hhcCccceeCCC
Q 008069 311 FFKR-PLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCD----RHFGGINYPVGG 384 (579)
Q Consensus 311 ~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~p~gG 384 (579)
+... .........+...++.+++++...++.+. .++..........++.+.++......+.. .+.....++.|+
T Consensus 226 ~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~ 305 (567)
T PLN02612 226 LLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGN 305 (567)
T ss_pred hhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCC
Confidence 0000 00000112234578999999887666554 46655544444556666665543322211 111234566666
Q ss_pred h-HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHH
Q 008069 385 V-GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQ 462 (579)
Q Consensus 385 ~-~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~ 462 (579)
. ..++++|++.+++.|++|++|++|++|..+ ++.+.+|++.+|+++.||.||+|+++. .+..|+++...+....+.+
T Consensus 306 ~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~-~l~~Ll~~~~~~~~~~~~l 384 (567)
T PLN02612 306 PPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD-ILKLLLPDQWKEIPYFKKL 384 (567)
T ss_pred chHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH-HHHHhCcchhcCcHHHHHH
Confidence 5 689999999999999999999999999985 455677888899899999999999874 4567777643333333344
Q ss_pred HhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCC
Q 008069 463 KLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGL 542 (579)
Q Consensus 463 ~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~ 542 (579)
+.+. ..+.++++++++++.+.+ . .++++.. .+..+++..+++.. +..+++|++++.+. ....++|.++
T Consensus 385 ~~l~-~~~v~~v~l~~dr~~~~~-~--~~~~~~~------~~~~~~~~d~S~~~-~~~~~~~~~ll~~~-~~~a~~~~~~ 452 (567)
T PLN02612 385 DKLV-GVPVINVHIWFDRKLKNT-Y--DHLLFSR------SPLLSVYADMSTTC-KEYYDPNKSMLELV-FAPAEEWISR 452 (567)
T ss_pred HhcC-CCCeEEEEEEECcccCCC-C--CceeecC------CCCceeehhhhhcc-hhhcCCCCeEEEEE-EEcChhhhcC
Confidence 4444 446889999999986422 1 1233332 12223444444433 44567777765543 4455677654
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhCCCC
Q 008069 543 AQKDYDAKKELVADEIINRLENKLFPGL 570 (579)
Q Consensus 543 ~~~~y~~~ke~~~~~il~~le~~~~P~l 570 (579)
.++++++.++++|+ ++||+.
T Consensus 453 -------sdeei~e~vl~~L~-~lfp~~ 472 (567)
T PLN02612 453 -------SDEDIIDATMKELA-KLFPDE 472 (567)
T ss_pred -------CHHHHHHHHHHHHH-HHCCcc
Confidence 34789999999999 899987
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.95 E-value=2.2e-25 Score=241.37 Aligned_cols=355 Identities=17% Similarity=0.159 Sum_probs=220.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCc
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~ 235 (579)
++|+|||||++||+||+.|+++| ++|+|||+.+++||++.|+..+|+.+|.|++++++.. ..+.++++++|+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~-----~~~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARK-----PSAPALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCc-----HHHHHHHHHcCCc
Confidence 47999999999999999999988 8999999999999999999999999999999887522 2377999999987
Q ss_pred eeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 008069 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGV--LAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
...........+.+.+|..+.++.... . ..|...... ..++....++.... ...
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~p~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~- 131 (451)
T PRK11883 76 DELVANTTGQSYIYVNGKLHPIPPGTV------M-GIPTSIAPFLFAGLVSPIGKLRAAA----------------DLR- 131 (451)
T ss_pred cceecCCCCcceEEECCeEEECCCCCe------e-ccCCCchhhhcCCCCCHHHHHHhhC----------------ccc-
Confidence 544332111122233444443332110 0 011100000 00000000000000 000
Q ss_pred ChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH--------------hhh------
Q 008069 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL--------------CDR------ 373 (579)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~------ 373 (579)
. .........++.+++.+.+.+...+.++...+....+..+.+.++....-.+ ...
T Consensus 132 ~----~~~~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (451)
T PRK11883 132 P----PRWKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK 207 (451)
T ss_pred C----CCCCCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCC
Confidence 0 0000123467888888877766666776665544444455555443211000 000
Q ss_pred -hcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCC
Q 008069 374 -HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (579)
Q Consensus 374 -~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~ 452 (579)
....+++++||++.+++.|++.+.+. +|+++++|++|..+++++. |.+.+|+++.||.||+|+++..+. .++.+
T Consensus 208 ~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~-v~~~~g~~~~~d~vI~a~p~~~~~-~l~~~- 282 (451)
T PRK11883 208 KTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYE-IVLSNGGEIEADAVIVAVPHPVLP-SLFVA- 282 (451)
T ss_pred CCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEE-EEECCCCEEEcCEEEECCCHHHHH-HhccC-
Confidence 01134578999999999999888543 8999999999998887764 778889899999999999998764 55543
Q ss_pred CCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEe
Q 008069 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (579)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~ 532 (579)
+...+.++++.+.+ ..+++++++.+.. .....+++++..+. +.....+..++..+|..+|+|+.++.++.
T Consensus 283 ---~~~~~~~~~~~~~~-~~~v~l~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~p~g~~~~~~~~ 352 (451)
T PRK11883 283 ---PPAFALFKTIPSTS-VATVALAFPESAT-NLPDGTGFLVARNS-----DYTITACTWTSKKWPHTTPEGKVLLRLYV 352 (451)
T ss_pred ---hhHHHHHhCCCCCc-eEEEEEEeccccC-CCCCceEEEecCCC-----CCcEEEEEeEcCcCCCCCCCCcEEEEEec
Confidence 22344556666655 5599999998742 11223455554321 11112344556777888999988877766
Q ss_pred ccchhhhcCCChhhHHHHHHHHHHHHHHHHHHhhC
Q 008069 533 ICSIEDWEGLAQKDYDAKKELVADEIINRLENKLF 567 (579)
Q Consensus 533 ~~~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~ 567 (579)
..+.+++ .++..++++++.+++.|+ +++
T Consensus 353 ~~~~~~~------~~~~~~~~~~~~~~~~L~-~~~ 380 (451)
T PRK11883 353 GRPGDEA------VVDATDEELVAFVLADLS-KVM 380 (451)
T ss_pred CCCCCch------hccCCHHHHHHHHHHHHH-HHh
Confidence 4332221 123346789999999999 665
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.95 E-value=1.2e-25 Score=236.07 Aligned_cols=353 Identities=20% Similarity=0.215 Sum_probs=245.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCc
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~ 235 (579)
++|+|||||++||++|+.|++++ ++|+|||+.+++||...|+..+||.+|.|++.+... -..+.++++++|++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-----~~~~l~li~eLGle 75 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-----KEEILDLIKELGLE 75 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-----hHHHHHHHHHhCcH
Confidence 36899999999999999999999 999999999999999999999999999999999853 14578999999999
Q ss_pred eeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEK----EGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~----~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
..+........+.+.+|..+.++....- .+|... .++.++... +
T Consensus 76 d~l~~~~~~~~~i~~~gkl~p~P~~~i~-------~ip~~~~~~~~~~~~~~~~-------------------------~ 123 (444)
T COG1232 76 DKLLWNSTARKYIYYDGKLHPIPTPTIL-------GIPLLLLSSEAGLARALQE-------------------------F 123 (444)
T ss_pred HhhccCCcccceEeeCCcEEECCcccee-------ecCCccccchhHHHHHHHh-------------------------h
Confidence 8877554444466677777766654311 111111 111111100 0
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHh------hhh-----------
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLC------DRH----------- 374 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------- 374 (579)
...+ ........++.+|+++.+.++.+..++........+.++...++....-.+. ...
T Consensus 124 ~~~~----~~~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~ 199 (444)
T COG1232 124 IRPK----SWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPK 199 (444)
T ss_pred hccc----CCCCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcc
Confidence 0000 0011235688999999999888888887776666666666655441110000 000
Q ss_pred ----cCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 375 ----FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 375 ----~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-..+++||+++++++|++.++.. |+++++|++|..+....+ +...+|+.+.||.||+|++++.. ..+++
T Consensus 200 ~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~-~~~~~g~~~~~D~VI~t~p~~~l-~~ll~ 274 (444)
T COG1232 200 QSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKT-IVDVGGEKITADGVISTAPLPEL-ARLLG 274 (444)
T ss_pred cccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcCCccE-EEEcCCceEEcceEEEcCCHHHH-HHHcC
Confidence 0134578999999999999999765 999999999999855444 55678888999999999998876 57887
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEE
Q 008069 451 GEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHI 530 (579)
Q Consensus 451 ~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~ 530 (579)
+. + .......++ ..+...+.++++++..+...+.+++.+.++ .++ .-.++.+|.+.|...|+|++++++
T Consensus 275 ~~--~--~~~~~~~~~-~~s~~~vv~~~~~~~~~~~~~~~g~~iad~-----~~~-~~a~~~~S~~~p~~~p~g~~ll~~ 343 (444)
T COG1232 275 DE--A--VSKAAKELQ-YTSVVTVVVGLDEKDNPALPDGYGLLIADD-----DPY-ILAITFHSNKWPHEAPEGKTLLRV 343 (444)
T ss_pred Cc--c--hhhhhhhcc-ccceEEEEEEeccccccCCCCceEEEEecC-----CCc-ceeEEEecccCCCCCCCCcEEEEE
Confidence 62 1 223344444 345667888998863333334466776652 232 345788899999999999999999
Q ss_pred EeccchhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCCCCCe
Q 008069 531 FTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSI 574 (579)
Q Consensus 531 ~~~~~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l~~~I 574 (579)
+...+.++|. +....|++.+.+++.|. ++++-..+.+
T Consensus 344 ~~~~~g~~~~------~~~~dee~~~~~l~~L~-~~~~~~~~~~ 380 (444)
T COG1232 344 EFGGPGDESV------STMSDEELVAAVLDDLK-KLGGINGDPV 380 (444)
T ss_pred EeecCCCcch------hccCHHHHHHHHHHHHH-HHcCcCcchh
Confidence 8876544442 33346899999999999 7876655443
No 11
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.94 E-value=3e-24 Score=233.34 Aligned_cols=356 Identities=14% Similarity=0.143 Sum_probs=217.6
Q ss_pred ccEEEECCChhHHHHHHHHHHc------CCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHH
Q 008069 158 YDAIVIGSGIGGLVAATQLAVK------GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~------g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~ 231 (579)
++|+|||||++||+||+.|++. |++|+|+|+.+++||++.|.+..|+.+|.|++++.+. ...+.+++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~-----~~~~~~l~~~ 76 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVAR-----NEHVMPLVKD 76 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcC-----CHHHHHHHHH
Confidence 4699999999999999999986 3799999999999999999999999999999998742 2347799999
Q ss_pred cCCceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHH--HHHHHHHHHHHhhhhhhhccchhhHHHh
Q 008069 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLA--FYGECWKIFNALNSLELKSLEEPIYLFG 309 (579)
Q Consensus 232 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (579)
+|++...........+.+.++....++.+.. ..+|.....+.+ ++....++ .. +.
T Consensus 77 lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~p~~~~~~~~~~~~~~~~~~-~~---------------~~ 133 (463)
T PRK12416 77 LNLEEEMVYNETGISYIYSDNTLHPIPSDTI-------FGIPMSVESLFSSTLVSTKGKI-VA---------------LK 133 (463)
T ss_pred cCCccceecCCCCceEEEECCeEEECCCCCe-------ecCCCChHHhhcCCcCCHHHHH-Hh---------------hh
Confidence 9987655433322222222333333222110 001111000000 00000000 00 00
Q ss_pred hhhcChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH----------hh-------
Q 008069 310 QFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL----------CD------- 372 (579)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~------- 372 (579)
..+.... ......|+.+++++.+.++..+.++...+....+..+.+.++......+ ..
T Consensus 134 ~~~~~~~-----~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~ 208 (463)
T PRK12416 134 DFITKNK-----EFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKK 208 (463)
T ss_pred hhccCCC-----CCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhh
Confidence 0000000 0013568889998888777777777666555555566665442211000 00
Q ss_pred ----hhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhc
Q 008069 373 ----RHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKL 448 (579)
Q Consensus 373 ----~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~L 448 (579)
.....+.+++||++.++++|++.+.+ ++|+++++|++|..+++++. |.+.+|+++.||.||+|+++... .+|
T Consensus 209 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~a~p~~~~-~~l 284 (463)
T PRK12416 209 QFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYE-ISFANHESIQADYVVLAAPHDIA-ETL 284 (463)
T ss_pred ccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEE-EEECCCCEEEeCEEEECCCHHHH-Hhh
Confidence 00113557899999999999999864 68999999999999888764 77888888999999999987665 677
Q ss_pred cCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEE
Q 008069 449 LKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHIL 528 (579)
Q Consensus 449 l~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l 528 (579)
+.++.++. .+..+.+ .+..+++++++.+.+..+.....++++++ .+...--+..+|...|..+|++..++
T Consensus 285 l~~~~l~~----~~~~~~~-~~~~~v~l~~~~~~~~~~~~g~G~l~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~l~ 354 (463)
T PRK12416 285 LQSNELNE----QFHTFKN-SSLISIYLGFDILDEQLPADGTGFIVTEN-----SDLHCDACTWTSRKWKHTSGKQKLLV 354 (463)
T ss_pred cCCcchhH----HHhcCCC-CceEEEEEEechhhcCCCCCceEEEeeCC-----CCCeEEEEEeecCCCCCcCCCCeEEE
Confidence 76544443 2344443 46789999999764322222234444432 11111112345555666667666666
Q ss_pred EEEecc---chhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 008069 529 HIFTIC---SIEDWEGLAQKDYDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 529 ~~~~~~---~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P 568 (579)
.++... ..++|.++ ..+++.+.+++.|+ +++.
T Consensus 355 ~~~~~~~~~~~~~~~~~-------~dee~~~~~~~~L~-~~lG 389 (463)
T PRK12416 355 RMFYKSTNPVYETIKNY-------SEEELVRVALYDIE-KSLG 389 (463)
T ss_pred EEEeCCCCCCchhhhcC-------CHHHHHHHHHHHHH-HHhC
Confidence 665531 22233322 34788999999999 7773
No 12
>PRK07208 hypothetical protein; Provisional
Probab=99.94 E-value=4.4e-24 Score=233.03 Aligned_cols=350 Identities=18% Similarity=0.173 Sum_probs=219.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCc
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~ 235 (579)
..+||+|||||++||+||+.|+++|++|+|+|+.+.+||++.+...+|+.+|.|+|++... ...+.++++++|..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~-----~~~~~~l~~~l~~~ 77 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSK-----SPEVMDLWNEILPD 77 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccC-----CHHHHHHHHHhcCC
Confidence 4579999999999999999999999999999999999999999999999999999998742 23467888888752
Q ss_pred eeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcCh
Q 008069 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRP 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (579)
-..........+. .+|..+.++.+...+.. ..+ +............ .....
T Consensus 78 ~~~~~~~~~~~~~-~~g~~~~~p~~~~~~l~----~~~-----~~~~~~~~~~~~~------------------~~~~~- 128 (479)
T PRK07208 78 DDFLLRPRLSRIY-YRGKFFDYPLKAFDALK----NLG-----LWRTAKCGASYLK------------------ARLRP- 128 (479)
T ss_pred CccccccccceEE-ECCEEecCCcchhHHHH----hCC-----HhHHHHHHHHHHH------------------HhcCC-
Confidence 2222111111111 23433333322111110 000 0000000000000 00000
Q ss_pred hhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHH-----------H--HHhh----------
Q 008069 316 LECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS-----------M--VLCD---------- 372 (579)
Q Consensus 316 ~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~---------- 372 (579)
.....|+.+|+.+.+.++....++...+....+.++.+.++.+.. + .+..
T Consensus 129 -------~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (479)
T PRK07208 129 -------RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKE 201 (479)
T ss_pred -------CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCC
Confidence 012467888888888887777777777666556666666554211 0 0000
Q ss_pred ---hhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCE-EEEEEe--CCCc--EEEcCEEEECCChhHH
Q 008069 373 ---RHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRL--SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 373 ---~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~-v~gV~~--~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
.....+.+|+||++.++++|++.+++.|++|++|++|++|..++++ +..+.. .+|+ ++.||.||+|++++.+
T Consensus 202 ~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l 281 (479)
T PRK07208 202 VETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLREL 281 (479)
T ss_pred ccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH
Confidence 0012456889999999999999999999999999999999998765 444443 2453 5889999999999887
Q ss_pred HhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCC
Q 008069 445 FGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEG 524 (579)
Q Consensus 445 ~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G 524 (579)
. .++++ .+|....+..+.+.+. +.++++++++++...+ .+++++.+ . ..+.+ .+..++..+|+++|+|
T Consensus 282 ~-~~l~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~~---~~~~~~~~-~---~~~~~--r~~~~~~~~~~~~p~g 349 (479)
T PRK07208 282 V-AALDP-PPPPEVRAAAAGLRYR-DFITVGLLVKELNLFP---DNWIYIHD-P---DVKVG--RLQNFNNWSPYLVPDG 349 (479)
T ss_pred H-HhcCC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCCCCC---CceEEecC-C---CCccc--eecccccCCcccCCCC
Confidence 5 45653 4666666666666654 4678999998764322 23333332 1 11111 1234466678899999
Q ss_pred ee-EEEEEecc--chhhhcCCChhhHHHHHHHHHHHHHHHHHHhhC
Q 008069 525 HH-ILHIFTIC--SIEDWEGLAQKDYDAKKELVADEIINRLENKLF 567 (579)
Q Consensus 525 ~~-~l~~~~~~--~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~ 567 (579)
++ .+.+..+. ....| ...++++.+.+++.|+ ++.
T Consensus 350 ~~~~l~~~~~~~~~~~~~--------~~~deel~~~~~~~L~-~l~ 386 (479)
T PRK07208 350 RDTWLGLEYFCFEGDDLW--------NMSDEDLIALAIQELA-RLG 386 (479)
T ss_pred CceEEEEEEEccCCCccc--------cCCHHHHHHHHHHHHH-HcC
Confidence 86 23222221 11122 2345789999999999 664
No 13
>PLN02487 zeta-carotene desaturase
Probab=99.93 E-value=1e-23 Score=230.58 Aligned_cols=407 Identities=13% Similarity=0.142 Sum_probs=241.9
Q ss_pred hhccccccccceee--cCCCcCCCCCC-CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEe-eCCeee
Q 008069 131 LMAKTVMSVDNLVE--IGGNEGMSRGA-DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTF 206 (579)
Q Consensus 131 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~ 206 (579)
.++++++.|..... ++.++.....+ ..++|+|||||++||++|+.|+++|++|+|+|+.+.+||.+.++. ..|+.+
T Consensus 46 ~~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~ 125 (569)
T PLN02487 46 SSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHI 125 (569)
T ss_pred HHHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEE
Confidence 36788888877765 55544322211 346999999999999999999999999999999999999999885 579999
Q ss_pred ccccccccCCCCCCChHHHHHHHHHcCCceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHH-
Q 008069 207 DVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGE- 285 (579)
Q Consensus 207 ~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~- 285 (579)
|.|.|++.+.+ ..+.++++++|+..+.........+...+|....+.... ..+.....+..|+..
T Consensus 126 e~G~h~~~~~~-----~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~---------p~~~pl~~~~~~l~~~ 191 (569)
T PLN02487 126 EMGLHVFFGCY-----NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRF---------PVGAPLHGIKAFLTTN 191 (569)
T ss_pred ecceeEecCCc-----HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCC---------CCCchhhhHHHHHcCC
Confidence 99999998643 357889999998765443332222333333322111000 001111111111110
Q ss_pred ----HHHHHHHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhcCCH-HHHHHHhhhhhhhhcCCCCC
Q 008069 286 ----CWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDP-QLLSFIDAECFIVSTINALQ 360 (579)
Q Consensus 286 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~-~l~~~l~~~~~~~~~~~~~~ 360 (579)
.+++...... ...+ ++..+................++.++++++..++ .+..+++..+....+..+.+
T Consensus 192 ~Ls~~dklr~~~~l-----~~~~--~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~ 264 (569)
T PLN02487 192 QLEPYDKARNALAL-----ATSP--VVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDN 264 (569)
T ss_pred CCCHHHHHhhcccc-----cccc--hhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHH
Confidence 0000000000 0000 0000000000000011233578999999999987 67789998888888888888
Q ss_pred chHHHHHHHHhh---hhc-CccceeCCChH-HHHHHHHHHHHHcCceEEeCceeeEEEEeC--C---EEEEEEe---CCC
Q 008069 361 TPMINASMVLCD---RHF-GGINYPVGGVG-GIAKSLAKGLADKGSEILYKANVTKVILEQ--G---KAVGVRL---SDG 427 (579)
Q Consensus 361 ~~~~~~~~~~~~---~~~-~g~~~p~gG~~-~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~--~---~v~gV~~---~dG 427 (579)
+++......+.. ... ....+++||.. .+.+.+++.++++|++|+++++|++|..++ + ++++|++ .++
T Consensus 265 ~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~ 344 (569)
T PLN02487 265 ISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEK 344 (569)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCc
Confidence 887665544332 111 23678999998 499999999999999999999999999873 2 3788988 344
Q ss_pred cEEEcCEEEECCChhHHHhhccCCCCCChH-HHHHHHhhccCCCeEEEEEeecCCcCCCCC-Cc-c----ceeeccchhh
Q 008069 428 REFYAKTIISNATRWDTFGKLLKGEQLPKE-EENFQKLYVKAPSFLSIHMGVKAEVLPPDT-DC-H----HFVLEDDWNR 500 (579)
Q Consensus 428 ~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~-~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~-~~-~----~~~~~~~~~~ 500 (579)
+++.+|.||+|++++.. .+|+++. ++.. ....+..+. +..++++||.++++...+.. +. . ..-+++.| +
T Consensus 345 ~~~~aD~VV~A~p~~~~-~~Llp~~-~~~~~~~~~l~~L~-~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~-~ 420 (569)
T PLN02487 345 EIVKADAYVAACDVPGI-KRLLPEQ-WREYEFFDNIYKLV-GVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLL-Y 420 (569)
T ss_pred eEEECCEEEECCCHHHH-HHhCCch-hhccHHHhHHhcCC-CeeEEEEEEEecccccccccccccccccccccccccc-c
Confidence 56899999999999865 6888863 2211 112223332 34588999999986643221 00 0 00122222 1
Q ss_pred hcCCcceEEEEcCCCCCCC--CC-CCCeeEEEEEeccchhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 008069 501 LEEPYGSIFLSIPTVLDSS--LA-PEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS 573 (579)
Q Consensus 501 ~~~p~~~i~~~~~s~~dp~--~a-P~G~~~l~~~~~~~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l~~~ 573 (579)
...+...+|..+. ...+. +. .+|. .+.+++... ++|.. ...++++++++++|. ++||.+++.
T Consensus 421 ~~~~~~~f~~di~-l~~~~~~~~~~~g~-~l~~vis~a-~~~~~-------~~~~ei~~~~~~~L~-~~~p~~~~~ 485 (569)
T PLN02487 421 SADADFSCFADLA-LTSPEDYYKEGEGS-LIQAVLTPG-DPYMP-------LSNDKIVEKVHKQVL-ELFPSSRGL 485 (569)
T ss_pred ccCCCcceEeeee-cCCHHHHcccCCce-EEEEEEcCC-ccccC-------CCHHHHHHHHHHHHH-HhCcccccC
Confidence 1111111111110 11111 11 2243 344443322 23332 244799999999999 899998654
No 14
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=2.5e-27 Score=251.42 Aligned_cols=181 Identities=17% Similarity=0.078 Sum_probs=166.3
Q ss_pred hhhhhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCC
Q 008069 37 ALSNKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNG 110 (579)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 110 (579)
...+-+.+|+.++|+.||+| ++|++ +|+++||+||+||.|.+|+. ++++.++....+.+|++| +||+
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~-~C~~~cp~~~~IP~~~~lv~------~g~~~~a~~~i~~tn~~p~~~gRvcp~ 77 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGD-PCITGCPVHNDIPEPIGLVR------EGVDHEAIKLIHKTNNLPAITGRVCPL 77 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCC-ccccCCcCCCcCCCHHHHHh------cCCcHHHHHHHHHhCCCccccCccCCC
Confidence 45677889999999999999 99999 99999999999999999999 999999999999999999 9999
Q ss_pred CCCCccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 111 STLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+++||++|+++. ...++.|+.+++++.+.++..+|.++.........+|+||||||+||+||..|++.|+.|+|+|+.+
T Consensus 78 ~~~ceg~cv~~~-~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 78 GNLCEGACVLGI-EELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCceeeeeeecc-CCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 999999999985 5689999999999999999999988875545566999999999999999999999999999999999
Q ss_pred CCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 191 IPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 191 ~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
.+||... |.++.|+.+ +...+...++|++.|+++.
T Consensus 157 ~~GGll~-yGIP~~kl~-----------k~i~d~~i~~l~~~Gv~~~ 191 (457)
T COG0493 157 LDGGLLL-YGIPDFKLP-----------KDILDRRLELLERSGVEFK 191 (457)
T ss_pred CCceeEE-ecCchhhcc-----------chHHHHHHHHHHHcCeEEE
Confidence 9999987 889998887 4467778899999997664
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.93 E-value=2.8e-23 Score=227.74 Aligned_cols=354 Identities=20% Similarity=0.215 Sum_probs=219.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHc-CCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~ 234 (579)
..+||+|||||++||++|++|+++ |++|+|+|+.+++||++.|...+|+.+|.|+|++... ...+..+++. |+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~-----~~~~~~l~~~-gl 84 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPS-----DPELTSAVDS-GL 84 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccC-----cHHHHHHHHc-CC
Confidence 457999999999999999999999 9999999999999999999999999999999999742 2234455555 76
Q ss_pred ceeEee-CCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 008069 235 EMEVIP-DPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (579)
Q Consensus 235 ~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
...... ......+.+.+|..+.++.+...+. ...+ ..+.+........+ ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~---~~~~-------~~~~~~~~~~~~~~---~~~-------------- 137 (496)
T PLN02576 85 RDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLP---TFDL-------LSAPGKIRAGLGAF---GWK-------------- 137 (496)
T ss_pred hhheecCCCCceEEEEECCEEEEcCCChHHhc---CcCc-------CChhHHHHHhHHHh---hcc--------------
Confidence 544332 2222333344665555554432211 0000 00011100000000 000
Q ss_pred ChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH---------------hhh-----
Q 008069 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL---------------CDR----- 373 (579)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~----- 373 (579)
... ......|+.+++++.+.++....++........+.++.+.++....-.+ ...
T Consensus 138 ~~~-----~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~ 212 (496)
T PLN02576 138 RPP-----PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKK 212 (496)
T ss_pred CCC-----CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcc
Confidence 000 0012468899999888887777887776665555566655543221100 000
Q ss_pred --------------hcCccceeCCChHHHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCE-EEEEEe--CCCc-EEEcCE
Q 008069 374 --------------HFGGINYPVGGVGGIAKSLAKGLADKG-SEILYKANVTKVILEQGK-AVGVRL--SDGR-EFYAKT 434 (579)
Q Consensus 374 --------------~~~g~~~p~gG~~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~-v~gV~~--~dG~-~i~Ad~ 434 (579)
.....+.++||++.|+++|++.+ + ++|++|++|++|..++++ +. |++ .+|+ ++.||.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~-v~~~~~~g~~~~~ad~ 288 (496)
T PLN02576 213 NPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYS-LTYDTPEGKVNVTAKA 288 (496)
T ss_pred cccccccccccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEE-EEEecCCCceeEEeCE
Confidence 00123667899999999999877 4 689999999999987765 32 433 3553 699999
Q ss_pred EEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCC------CCccceeeccchhhhcCCcceE
Q 008069 435 IISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD------TDCHHFVLEDDWNRLEEPYGSI 508 (579)
Q Consensus 435 VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~i 508 (579)
||+|+++..+ ..++.+ .++..++.+..+.+.+ ..+|++.++++.|..+ .....++.+.. .....+
T Consensus 289 VI~a~P~~~l-~~ll~~--~~~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~-----~~~~~l 359 (496)
T PLN02576 289 VVMTAPLYVV-SEMLRP--KSPAAADALPEFYYPP-VAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRK-----QGVKTL 359 (496)
T ss_pred EEECCCHHHH-HHHhcc--cCHHHHHHhccCCCCc-eEEEEEEEchHHcccccccCCCCCceEEEccCC-----CCCceE
Confidence 9999998775 567664 4555666677766654 5688999998766541 11111111110 111223
Q ss_pred EEEcCCCCCCCCCCCCeeEEEEEeccc-hhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 008069 509 FLSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 509 ~~~~~s~~dp~~aP~G~~~l~~~~~~~-~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P 568 (579)
.+..++...|.++|+|+.+++.++... .++|.+ ...+++.+.+++.|. ++++
T Consensus 360 g~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~-------~s~ee~~~~~~~~L~-~~~g 412 (496)
T PLN02576 360 GTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIAS-------ASEEELVEAVDRDLR-KLLL 412 (496)
T ss_pred EEEeecCcCCCCCCCCCEEEEEEECCCCCccccc-------CCHHHHHHHHHHHHH-HHhC
Confidence 344456677888888877777666532 222222 234788999999998 6765
No 16
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.92 E-value=6.1e-23 Score=222.57 Aligned_cols=382 Identities=16% Similarity=0.190 Sum_probs=219.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEe-eCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
+|+|||||++||++|+.|+++|++|+|+|+.+.+||++.++. ..|+.+|.|+|++.+.+ ..+.++++++|+.-.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~-----~~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCY-----ANLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCch-----HHHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999999874 67999999999998633 347889999998755
Q ss_pred EeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHH-----HHHHHHHHhhhhhhhccchhhHHHhhhh
Q 008069 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYG-----ECWKIFNALNSLELKSLEEPIYLFGQFF 312 (579)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
.........+...++....+.... ..+.....+..++. ...++..... .. ..+ ....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~P~~~~~~~l~~~~ls~~dklr~~~~-~~----~~~--~~~~~~ 139 (474)
T TIGR02732 76 LLLKEHTHTFVNKGGDIGELDFRF---------ATGAPFNGLKAFFTTSQLKWVDKLRNALA-LG----TSP--IVRGLV 139 (474)
T ss_pred cccccceeEEEcCCCcccccccCC---------CCCCchhhhHHHhcCCCCCHHHHHHHHHH-hh----hhH--HHhhcc
Confidence 444333322322233221111000 00000011111110 0000000000 00 000 000000
Q ss_pred cChhhhhHHhhhccccHHHHHHHhcCCHH-HHHHHhhhhhhhhcCCCCCchHHHHHH---HHhhhh-cCccceeCCChHH
Q 008069 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQ-LLSFIDAECFIVSTINALQTPMINASM---VLCDRH-FGGINYPVGGVGG 387 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~g~~~p~gG~~~ 387 (579)
...........+...++.++++++..++. ++.+++..+....+.++.++++..... .+.... .....+++||...
T Consensus 140 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~ 219 (474)
T TIGR02732 140 DYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDK 219 (474)
T ss_pred ccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcch
Confidence 00000011112345789999999998875 778888887777777777777654422 111111 1245678888765
Q ss_pred -HHHHHHHHHHHcCceEEeCceeeEEEEeC---C--EEEEEEeCCC---cEEEcCEEEECCChhHHHhhccCCCCCChHH
Q 008069 388 -IAKSLAKGLADKGSEILYKANVTKVILEQ---G--KAVGVRLSDG---REFYAKTIISNATRWDTFGKLLKGEQLPKEE 458 (579)
Q Consensus 388 -l~~aL~~~l~~~G~~I~l~~~V~~I~~~~---~--~v~gV~~~dG---~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~ 458 (579)
+.+.|.+.++++|++|+++++|++|..++ + ++++|++.+| +++.||.||+|++++.+ .+|+++..-....
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~-~~Ll~~~~~~~~~ 298 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGI-KRLLPQEWRQFEE 298 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHH-HhhCChhhhcCHH
Confidence 66779999999999999999999999864 2 3778877655 45899999999999876 5788752111112
Q ss_pred HHHHHhhccCCCeEEEEEeecCCcCCCCC-Cccceee----ccchhhhcCCcceEEEEcCCCCCC-CCCCCCeeE-EEEE
Q 008069 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDT-DCHHFVL----EDDWNRLEEPYGSIFLSIPTVLDS-SLAPEGHHI-LHIF 531 (579)
Q Consensus 459 ~~~~~~~~~~~s~~~v~lg~~~~~~~~~~-~~~~~~~----~~~~~~~~~p~~~i~~~~~s~~dp-~~aP~G~~~-l~~~ 531 (579)
...+..+.+ .++++|||.++++...+.. .....+. -+++-++......+|..+ +...| .+++.|... +.+.
T Consensus 299 ~~~l~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 376 (474)
T TIGR02732 299 FDNIYKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADL-ALTSPDDYYKEGQGSLLQCV 376 (474)
T ss_pred HhhHhcCCC-CCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehh-hccCHHHHhccCCCeEEEEE
Confidence 233444444 4678999999876533211 0000110 001100111000111111 11112 234445443 3333
Q ss_pred eccchhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 008069 532 TICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS 573 (579)
Q Consensus 532 ~~~~~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l~~~ 573 (579)
+... .+|. +...++++++++++|+ +.||.+++.
T Consensus 377 ~~~~-~~~~-------~~~~~~l~~~~~~~L~-~~~p~~~~~ 409 (474)
T TIGR02732 377 LTPG-DPWM-------PESNEEIAKRVDKQVR-ALFPSSKNL 409 (474)
T ss_pred EeCh-hhhc-------CCCHHHHHHHHHHHHH-HhCccccCC
Confidence 3222 2332 2344789999999999 899987543
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.92 E-value=3.7e-22 Score=216.29 Aligned_cols=359 Identities=18% Similarity=0.243 Sum_probs=210.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEe-eCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
+|+|||||++||++|+.|+++|++|+|+|+.+++||++.++. .+|+.+|.|.|++.+..+ .+.++++++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~-----~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP-----NMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCc-----hHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999998875 589999999999886432 46789999998644
Q ss_pred EeeCCCeEEEEcC--CCceEEe--cC---CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhh
Q 008069 238 VIPDPTTVHFHLP--NDLSVRV--HR---EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQ 310 (579)
Q Consensus 238 ~~~~~~~~~~~~~--~g~~~~~--~~---~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
.........+... ++....+ +. ....... +....+. - .+.+.. .....+ ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~---~~~~~~-~~~~~~--------------~~~ 134 (453)
T TIGR02731 76 LQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAA-ILRNNDM--L---TWPEKI-KFAIGL--------------LPA 134 (453)
T ss_pred eeecCCceEEecCCCCcceeeccCCCCCCCHHHHHH-HhcCcCC--C---CHHHHH-HHHHHh--------------HHH
Confidence 3322222222211 1111111 10 0000000 0000000 0 000000 000000 000
Q ss_pred hhcChhhhhHHhhhccccHHHHHHHhcCCHHHH-HHHhhhhhhhhcCCCCCchHHHHHHHHhhhh---cCc-cceeCCC-
Q 008069 311 FFKRPLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDRH---FGG-INYPVGG- 384 (579)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-~~~p~gG- 384 (579)
... .......+...++.+++++....+.+. .++...+....+.++.+.++.+....+.... .+. ..+..|+
T Consensus 135 ~~~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~ 211 (453)
T TIGR02731 135 IVR---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAP 211 (453)
T ss_pred Hhc---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCC
Confidence 000 000112234678999999877777655 4555554444455666666555432222111 111 1234444
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCCCc-----EEEcCEEEECCChhHHHhhccCCCCCC-hH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGR-----EFYAKTIISNATRWDTFGKLLKGEQLP-KE 457 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~-----~i~Ad~VV~a~~~~~~~~~Ll~~~~lp-~~ 457 (579)
...++++|.+.++++|++|++|++|++|..+ ++++++|++.+|+ ++.+|.||+|+++.. +.+||+.. .+ ..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~-~~~~~ 289 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQP-WKQMP 289 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchh-hhcCH
Confidence 5789999999999999999999999999864 4568888887765 799999999999866 56787652 22 22
Q ss_pred HHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchh
Q 008069 458 EENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIE 537 (579)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~ 537 (579)
..+.+..++ ..+.++++++++++.+.+. ++++.++ +........++... ..+++|++++.++.. ..+
T Consensus 290 ~~~~~~~~~-~~~~~~v~l~~~~~~~~~~----~~~~~~~------~~~~~~~~~s~~~~-~~~~~~~~l~~~~~~-~~~ 356 (453)
T TIGR02731 290 FFQKLNGLE-GVPVINVHIWFDRKLTTVD----HLLFSRS------PLLSVYADMSETCK-EYADPDKSMLELVFA-PAA 356 (453)
T ss_pred HHHHhhcCC-CCcEEEEEEEEccccCCCC----ceeeeCC------CcceeecchhhhCh-hhcCCCCeEEEEEec-Chh
Confidence 333444444 3467899999999764321 2333221 11011111111111 234456666665443 223
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHhhCCC
Q 008069 538 DWEGLAQKDYDAKKELVADEIINRLENKLFPG 569 (579)
Q Consensus 538 ~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~ 569 (579)
.|.+ ..+|++.+.+++.|+ ++||+
T Consensus 357 ~~~~-------~~~ee~~~~v~~~L~-~~~~~ 380 (453)
T TIGR02731 357 DWIG-------RSDEEIIDATMAELA-KLFPN 380 (453)
T ss_pred hhhc-------CCHHHHHHHHHHHHH-HhCCc
Confidence 4433 346889999999999 89985
No 18
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.90 E-value=2.9e-25 Score=255.76 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=144.5
Q ss_pred hhcccccc----ccccCCC-CCccccccc------------ccccccccccccccccccccccCCccccccccccCCCCC
Q 008069 42 VQSFGQRD----AMQLGSS-SKPRIRNCM------------IQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLK 104 (579)
Q Consensus 42 ~~~~~~~~----~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (579)
.++|+.++ |++||+| ++|++|+|+ ..||+||+||.|+++.+ +++|.+|..+.+++|+
T Consensus 171 ~~~~~~~~~~~~~~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~Ip~~i~~i~------~g~~~~A~~~i~~~np 244 (944)
T PRK12779 171 SLGYSVREVELFVWLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLG------NGKHREALELIESCNP 244 (944)
T ss_pred ccCCCHHHhhhhHHHHHHHhcCCCCCCCCCCcccccccCcCCCCcCCCcHHHHHHHHH------CCCHHHHHHHHHHhCC
Confidence 45699988 5699999 999999995 69999999999999999 9999999999999999
Q ss_pred CC-----CCCCCCCCccccccccccccchhhhhccccccccceeecC------CCc-CCCCCCCCccEEEECCChhHHHH
Q 008069 105 SS-----NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIG------GNE-GMSRGADDYDAIVIGSGIGGLVA 172 (579)
Q Consensus 105 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~v~viG~g~~g~~~ 172 (579)
+| +||++.+||++|+++ + .+++|+.+|+++++.....+. ... ........++|+|||||+|||+|
T Consensus 245 ~p~~~GrVCp~~~~CE~~C~~~-~--~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsa 321 (944)
T PRK12779 245 LPNVTGRVCPQELQCQGVCTHT-K--RPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLIN 321 (944)
T ss_pred hhHHhcCcCCCccCHHHhccCC-C--cCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHH
Confidence 99 999999999999988 2 599999999999886432211 100 00112357899999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 173 ATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 173 a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
|+.|+++|++|+|||+.+.+||... +.++.|++. +.......+.++.+|+++.
T Consensus 322 A~~Lar~G~~VtVfE~~~~~GG~l~-yGIP~~rlp-----------~~vi~~~i~~l~~~Gv~f~ 374 (944)
T PRK12779 322 AYLLAVEGFPVTVFEAFHDLGGVLR-YGIPEFRLP-----------NQLIDDVVEKIKLLGGRFV 374 (944)
T ss_pred HHHHHHCCCeEEEEeeCCCCCceEE-ccCCCCcCh-----------HHHHHHHHHHHHhhcCeEE
Confidence 9999999999999999999999876 777776654 2233455667788888764
No 19
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=3.5e-25 Score=248.32 Aligned_cols=178 Identities=14% Similarity=0.063 Sum_probs=153.9
Q ss_pred hhhccccccccccCCC-CCcc-cccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 41 KVQSFGQRDAMQLGSS-SKPR-IRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
--..|+.++|+.||+| ++|| .|+|+..||+||+||.|+++.. +++|.+|..+...+|++| +||++.+
T Consensus 194 v~~~~~~~~~~~ea~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~------~g~~~~a~~~~~~~np~p~~~grvCp~~~~ 267 (639)
T PRK12809 194 IYCGLDPQQATYESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQ------EGKIIEAAELCHQTSSLPEICGRVCPQDRL 267 (639)
T ss_pred hhccCCHHHHHHHHHHHhCCCCCCcccccCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCCcchhhcccCCCCCC
Confidence 3468999999999999 9997 9999999999999999999999 999999999999999999 9999999
Q ss_pred CccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
||++|.++.. ..+++|+.+|+++.+.+...+|.+.........++|+|||||++||++|+.|++.|++|+|||+.+.+|
T Consensus 268 Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 268 CEGACTLKDH-SGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred hHHhccCCCc-CCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999854 479999999999999998888866543334457899999999999999999999999999999999999
Q ss_pred cceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 194 GSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 194 g~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
|... +.++.|+++ +.......+.+..+|+++.
T Consensus 347 G~l~-~gip~~~l~-----------~~~~~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 347 GMLT-FGIPPFKLD-----------KTVLSQRREIFTAMGIDFH 378 (639)
T ss_pred Ceee-ccCCcccCC-----------HHHHHHHHHHHHHCCeEEE
Confidence 9866 667776654 1123345567788887653
No 20
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=6.3e-25 Score=247.31 Aligned_cols=178 Identities=17% Similarity=0.102 Sum_probs=151.1
Q ss_pred hhhhccccccccccCCC-CCcc-cccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPR-IRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGST 112 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 112 (579)
|-..+|+.++|+.||+| ++|+ .|+|+..||+||+||.|+++.+ +++|.+|..+...+|++| +||++.
T Consensus 210 e~~~~~~~~~a~~~~~rc~~C~~~~~C~~~CP~~~~i~~~~~~~~------~g~~~~A~~~~~~~np~p~~~grvCp~~~ 283 (654)
T PRK12769 210 EIYLPFRADQAQREASRCLKCGEHSICEWTCPLHNHIPQWIELVK------AGNIDAAVELSHQTNSLPEITGRVCPQDR 283 (654)
T ss_pred hhcCCCCHHHHHHHHHhhhcCCCCCCccccCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCCchhHhcccCCCCC
Confidence 34578999999999999 9997 8999999999999999999999 999999999999999999 999999
Q ss_pred CCccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 113 LRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.||++|+++.. -.+++|+.+|+++.+.+...++.+.........++|+|||||++||++|..|++.|++|+|||+.+.+
T Consensus 284 ~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 284 LCEGACTLRDE-YGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred ChHHhccCCCC-CCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 99999999854 47999999999999998888776543222345789999999999999999999999999999999999
Q ss_pred CcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 193 GGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 193 gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
||... +.++++.++ +.......+.++++|+++
T Consensus 363 GG~l~-~gip~~~l~-----------~~~~~~~~~~~~~~Gv~~ 394 (654)
T PRK12769 363 GGLLT-FGIPAFKLD-----------KSLLARRREIFSAMGIEF 394 (654)
T ss_pred Cceee-ecCCCccCC-----------HHHHHHHHHHHHHCCeEE
Confidence 99866 555655443 112333456677778654
No 21
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=1.3e-20 Score=203.31 Aligned_cols=347 Identities=19% Similarity=0.181 Sum_probs=195.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
.+|+|||||++||+||+.|.++|++|+|+|+.+++||++.|....|+.+|.|++++++... .+.+.++++++|++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~---~~~~~~l~~~lgl~~~ 77 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCN---ENPLAPLIGRLGLPLY 77 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCC---CchHHHHHHHhCCceE
Confidence 4799999999999999999999999999999999999999888889999999999986321 1236789999998654
Q ss_pred EeeCCCeEEEEcCCC-ceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh
Q 008069 238 VIPDPTTVHFHLPND-LSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (579)
Q Consensus 238 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (579)
...... .+.+.++ ..+.+..... ..+| ...+..+......+........
T Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~------------------- 127 (435)
T PLN02268 78 RTSGDN--SVLYDHDLESYALFDMDG-------NQVP--QELVTKVGETFERILEETEKVR------------------- 127 (435)
T ss_pred eccCCc--cccccccccccceecCCC-------CCCC--HHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 221111 1111111 0000000000 0000 0001111111111111100000
Q ss_pred hhhHHhhhccccHHHHHHHhcCCH-------HHHHHHhhh---hhhhhcCCCCCchHHHHHHHHhhhhcCccceeCCChH
Q 008069 317 ECLTLAYYLPQNAGNIARKYIKDP-------QLLSFIDAE---CFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVG 386 (579)
Q Consensus 317 ~~~~~~~~~~~s~~~~l~~~~~~~-------~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~gG~~ 386 (579)
.......|+.+++++++... .-+.++... ...+.+.++.+.++..... .....++..+..+|++
T Consensus 128 ----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~~~~~g~~~~~~~G~~ 201 (435)
T PLN02268 128 ----DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--EELLEGGHGLMVRGYD 201 (435)
T ss_pred ----hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--ccccCCCceeecCCHH
Confidence 00112335555554443211 112222111 0111233444443322100 0001123346778999
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc-CCCCCChHHHHHHHhh
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL-KGEQLPKEEENFQKLY 465 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll-~~~~lp~~~~~~~~~~ 465 (579)
.++++|.+ |++|+++++|++|...++++. |++.+|+++.||.||+|+|+..+-..++ ..+.+|+.+++.++++
T Consensus 202 ~l~~~l~~-----~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~ 275 (435)
T PLN02268 202 PVINTLAK-----GLDIRLNHRVTKIVRRYNGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDL 275 (435)
T ss_pred HHHHHHhc-----cCceeCCCeeEEEEEcCCcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhC
Confidence 99998865 457999999999998887765 7888898899999999999876522222 2346888877787777
Q ss_pred ccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccc-hhhhcCCCh
Q 008069 466 VKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQ 544 (579)
Q Consensus 466 ~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~-~~~w~~~~~ 544 (579)
.++. ..++++.++.++|+. ......+.+..+ +. ..+... . .+.|+.++.+++... ...|..+
T Consensus 276 ~~g~-~~Kv~l~f~~~fw~~-~~~~g~~~~~~~-----~~-~~~~~~------~-~~~g~~~l~~~~~g~~a~~~~~~-- 338 (435)
T PLN02268 276 GVGI-ENKIALHFDSVFWPN-VEFLGVVAPTSY-----GC-SYFLNL------H-KATGHPVLVYMPAGRLARDIEKL-- 338 (435)
T ss_pred Cccc-eeEEEEEeCCCCCCC-CceeeccCCCCC-----Cc-eEEEec------c-cCCCCCEEEEEeccHHHHHHHhC--
Confidence 6655 458999999988753 222222221110 10 111111 1 124666666655432 1223222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 008069 545 KDYDAKKELVADEIINRLENKLFPGLKQ 572 (579)
Q Consensus 545 ~~y~~~ke~~~~~il~~le~~~~P~l~~ 572 (579)
..++..+.+++.|. +++|...+
T Consensus 339 -----~~~e~~~~v~~~L~-~~~~~~~~ 360 (435)
T PLN02268 339 -----SDEAAANFAMSQLK-KMLPDATE 360 (435)
T ss_pred -----CHHHHHHHHHHHHH-HHcCCCCC
Confidence 34678999999999 78886443
No 22
>PRK12831 putative oxidoreductase; Provisional
Probab=99.89 E-value=4.6e-24 Score=230.57 Aligned_cols=178 Identities=14% Similarity=0.098 Sum_probs=150.0
Q ss_pred hhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
|-..+|+.++|++||+| ++|+.|+|+..||.|++||.|+.+.. +++|.+|..+...+|++| +||++..
T Consensus 25 e~~~~~~~~~~~~ea~rc~~c~~~~C~~~CP~~~~i~~~~~~~~------~~~~~~a~~~~~~~np~p~~~grvC~~~~~ 98 (464)
T PRK12831 25 EVCLGYNEEEAVKEASRCLQCKKPKCVKGCPVSINIPGFISKLK------EGDFEEAAKIIAKYNALPAVCGRVCPQESQ 98 (464)
T ss_pred hhcCCCCHHHHHHHHHhhcCCCCCchhhhCCCCCCHHHHHHHHH------CCCHHHHHHHHHHhCCchhhhhccCCCCCC
Confidence 44679999999999999 99999999999999999999999999 999999999999999999 8999999
Q ss_pred CccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
||.+|.++.. -.+++|..+++++.+.+...++... .+.....+||+|||||++||++|..|++.|++|+|+|+.+.+|
T Consensus 99 Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~~~~~~~-~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 99 CEGKCVLGIK-GEPVAIGKLERFVADWARENGIDLS-ETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred hHHHhcCCCC-CCCeehhHHHHHHHHHHHHcCCCCC-CCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 9999999854 4799999999999998877776532 2334567899999999999999999999999999999999999
Q ss_pred cceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 194 GSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 194 g~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
|.+. +.++++.+.. ........+.++++|+++
T Consensus 177 G~l~-~gip~~~l~~----------~~~~~~~~~~~~~~gv~i 208 (464)
T PRK12831 177 GVLV-YGIPEFRLPK----------ETVVKKEIENIKKLGVKI 208 (464)
T ss_pred Ceee-ecCCCccCCc----------cHHHHHHHHHHHHcCCEE
Confidence 9875 5555543221 112233456677778754
No 23
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.88 E-value=1.2e-23 Score=227.67 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=152.6
Q ss_pred hhhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCC
Q 008069 39 SNKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGST 112 (579)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 112 (579)
.|-..+|++++|.++|+| ++|++|+|+..||.|+.||.|+.+.. ++++.+|..+...+|++| +||.+.
T Consensus 24 ~e~~~~~~~~~~~~~~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~------~g~~~~a~~~~~~~np~~~~~grvC~~~~ 97 (467)
T TIGR01318 24 REIYCPFDPGQAQYQADRCLYCGNPYCEWKCPVHNAIPQWLQLVQ------EGRIDEAAELSHQTNTLPEICGRVCPQDR 97 (467)
T ss_pred HhhcCCCCHHHHHHHHHhcccCCCccccccCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCCchHhhcccCCCCC
Confidence 356789999999999999 99999999999999999999999999 999999999999999999 999999
Q ss_pred CCccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 113 LRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.||++|.++.. ..++.|..+++++.+.....+|.+.........++|+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus 98 ~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 98 LCEGACTLNDE-FGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred ChHHhCcCCCC-CCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 99999999853 48999999999999988777776653333446789999999999999999999999999999999999
Q ss_pred CcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 193 GGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 193 gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
||... +.++++.++ ........+.++++|+++
T Consensus 177 gG~l~-~gip~~~~~-----------~~~~~~~~~~~~~~Gv~~ 208 (467)
T TIGR01318 177 GGLLT-FGIPSFKLD-----------KAVLSRRREIFTAMGIEF 208 (467)
T ss_pred Cceee-ecCccccCC-----------HHHHHHHHHHHHHCCCEE
Confidence 99765 555555332 112234456778888765
No 24
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.88 E-value=1.1e-23 Score=244.70 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=150.0
Q ss_pred hhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
|-.+.|++++|++||+| ++|+.|+|+..||+||+||.|+++.. +++|.+|..+...+|++| +||++.+
T Consensus 316 ev~~~~~~~~~~~ea~rC~~c~~~~C~~~CP~~~dip~~~~~i~------~g~~~~A~~~i~~~np~p~~~grvCp~~~~ 389 (1006)
T PRK12775 316 EVNLGYSLEDALQEAERCIQCAKPTCIAGCPVQIDIPVFIRHVV------VRDFDGALEVIYEASIFPSICGRVCPQETQ 389 (1006)
T ss_pred HHhccCCHHHHHHHHHhccCCCCccccCCCCCCCCHHHHHHHHH------CCCHHHHHHHHHHhCChHHHhcCcCCCCCC
Confidence 44578999999999999 99999999999999999999999999 999999999999999999 9999999
Q ss_pred CccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
||++|+++.. ..+++|+.+++++++.+...++..+. .....+||+|||||++||+||..|+++|++|+|||+.+.+|
T Consensus 390 Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~~~~~~~~--~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 390 CEAQCIIAKK-HESVGIGRLERFVGDNARAKPVKPPR--FSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred HHHhCcCCCC-CCCeeecHHHHHHHHHHHHcCCCCCC--CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 9999999854 48999999999999988766664421 22346899999999999999999999999999999999999
Q ss_pred cceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 194 GSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 194 g~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
|..+ +.++++... +.......+.+..+|+++.
T Consensus 467 G~l~-~gip~~rl~-----------~e~~~~~~~~l~~~Gv~~~ 498 (1006)
T PRK12775 467 GVLQ-YGIPSFRLP-----------RDIIDREVQRLVDIGVKIE 498 (1006)
T ss_pred ceee-ccCCccCCC-----------HHHHHHHHHHHHHCCCEEE
Confidence 9866 455555321 1233445667778887653
No 25
>PLN02676 polyamine oxidase
Probab=99.87 E-value=8.2e-20 Score=198.42 Aligned_cols=353 Identities=14% Similarity=0.132 Sum_probs=197.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCC-cEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g 233 (579)
...+||+|||||++||+||..|+++|. +|+|+|+.+++||++.+...+|+.+|.|++++.+.... ..+.+.++++++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~-~~~~~~~l~~~~g 102 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGP-ESNPIWELANKLK 102 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCc-ccChHHHHHHhcC
Confidence 456899999999999999999999998 59999999999999999888999999999999864311 2345678889999
Q ss_pred CceeEeeCCC-eEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 008069 234 CEMEVIPDPT-TVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (579)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
+.....+... ...+...+|..+. ...... +...+....+...... .....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~---------- 153 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYKQDGGLYP-----KKVVQK-----------SMKVADASDEFGENLS---ISLSA---------- 153 (487)
T ss_pred CceeecCccccceeEECCCCCCCC-----HHHHHH-----------HHHHHHHHHHHHHHHH---Hhhcc----------
Confidence 8754322111 2222223443321 011110 1111111111100000 00000
Q ss_pred cChhhhhHHhhhccccH--HHHHHHhcC-CH--HHHHHHhhhhhhhhcCCCCCchHHHHHH-HHhhhhcCcccee--CCC
Q 008069 313 KRPLECLTLAYYLPQNA--GNIARKYIK-DP--QLLSFIDAECFIVSTINALQTPMINASM-VLCDRHFGGINYP--VGG 384 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~s~--~~~l~~~~~-~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~p--~gG 384 (579)
. .....+. .+.+.+... .+ ....++.. ....+..+...++..... .......+..++. +||
T Consensus 154 -~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G 222 (487)
T PLN02676 154 -K--------KAVDISILTAQRLFGQVPKTPLEMVIDYYNY--DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRG 222 (487)
T ss_pred -c--------CCCCccHHHHHHHHhhCCCCHHHHHHHHHhc--cceeccCccccchhhcCcccccccCCCceEEeecCCC
Confidence 0 0000111 111222221 11 11111110 011123333333322110 0000011122333 689
Q ss_pred hHHHHHHHHHHHHHc------CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHh-hccCCCCCChH
Q 008069 385 VGGIAKSLAKGLADK------GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKE 457 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~------G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~-~Ll~~~~lp~~ 457 (579)
++.+++.|++.+.++ +.+|++|++|++|..++++|+ |.+.+|++++||+||+|+|+..+-. .+...+.||..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~ 301 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW 301 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHH
Confidence 999999999887543 257999999999999888776 8889998999999999999866421 14445579988
Q ss_pred HHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccc-h
Q 008069 458 EENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-I 536 (579)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~-~ 536 (579)
+++.++++.++. ..+|++.+++++|+.+.....+.+.+. ...+..++.. .|.+ ++|..++.++...+ .
T Consensus 302 k~~ai~~l~~g~-~~Kv~l~f~~~FW~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~--~~~~~~l~~~~~g~~a 370 (487)
T PLN02676 302 KIEAIYQFDMAV-YTKIFLKFPYKFWPSGPGTEFFLYAHE----RRGYYPFWQH----LENE--YPGSNVLFVTVTDEES 370 (487)
T ss_pred HHHHHHhCCcee-eEEEEEEeCCCCCCCCCCceeeeeecc----ccccchhhhh----cccC--CCCCCEEEEEechHHH
Confidence 777777776544 569999999999876432212222110 1111011111 1111 23445555554332 2
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 008069 537 EDWEGLAQKDYDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 537 ~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P 568 (579)
..|..++ .++..+.+++.|. ++|+
T Consensus 371 ~~~~~~s-------~e~~~~~vl~~L~-~~~g 394 (487)
T PLN02676 371 RRIEQQP-------DSETKAEIMEVLR-KMFG 394 (487)
T ss_pred HHHHhCC-------HHHHHHHHHHHHH-HHhC
Confidence 2333222 3567788999999 7775
No 26
>PLN02529 lysine-specific histone demethylase 1
Probab=99.87 E-value=2.1e-19 Score=200.61 Aligned_cols=342 Identities=16% Similarity=0.179 Sum_probs=198.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeC--C--eeeccccccccCCCCCCChHHHHHHHHH
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD--G--YTFDVGSSVMFGFSDKGNLNLITQALAA 231 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~--g--~~~~~G~~~~~g~~~~~~~~~~~~~l~~ 231 (579)
..+||+|||||++||+||..|+++|++|+|+|+.+++||++.|.... | +.+|+|++++++... +.+..+.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~----npl~~la~~ 234 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHA----NPLGVLARQ 234 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccccc----chHHHHHHH
Confidence 46899999999999999999999999999999999999999988764 3 489999999998542 236678889
Q ss_pred cCCceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 232 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
+|+++.... ....++..+|..+....+. .+. ..+..+++..........
T Consensus 235 lgl~~~~~~--~~~~~~~~~G~~v~~~~~~-----~~~-------~~~~~~l~~~~~l~~~~~----------------- 283 (738)
T PLN02529 235 LSIPLHKVR--DNCPLYKPDGALVDKEIDS-----NIE-------FIFNKLLDKVTELRQIMG----------------- 283 (738)
T ss_pred hCCCccccC--CCceEEeCCCcCcchhhhh-----hHH-------HHHHHHHHHHHHHHHhcc-----------------
Confidence 998765432 2233444566443211110 000 001111111111100000
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhc------CCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhh---hhcCccceeC
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKYI------KDPQLLSFIDAECFIVSTINALQTPMINASMVLCD---RHFGGINYPV 382 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~p~ 382 (579)
......|+.+++++.. .++.-++++...........+.....+.......+ ...+....+.
T Consensus 284 ----------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~ 353 (738)
T PLN02529 284 ----------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLA 353 (738)
T ss_pred ----------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEEC
Confidence 0011234444444332 12222233332211111122222222222111111 1113345688
Q ss_pred CChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHH
Q 008069 383 GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENF 461 (579)
Q Consensus 383 gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~-~Ll~~~~lp~~~~~~ 461 (579)
||+++++++|++.+ .|++|++|++|..++++|+ |.. +++++.||.||+|+|+..+-. .+.-.+.+|+.+.+.
T Consensus 354 GG~~~Li~aLA~~L-----~IrLnt~V~~I~~~~dGVt-V~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~A 426 (738)
T PLN02529 354 GGNWRLINALCEGV-----PIFYGKTVDTIKYGNDGVE-VIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAA 426 (738)
T ss_pred CcHHHHHHHHHhcC-----CEEcCCceeEEEEcCCeEE-EEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHH
Confidence 99999999988654 6999999999999888765 554 456799999999999877532 232344689888888
Q ss_pred HHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccc-hhhhc
Q 008069 462 QKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWE 540 (579)
Q Consensus 462 ~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~-~~~w~ 540 (579)
++++.+++ ..+|++.|++++|+.+.....++.... ...+.+++.... +. +.|..++..++..+ ...|.
T Consensus 427 I~rL~yG~-v~KV~L~F~~~FW~~~~~~fG~l~~~~-----~~~g~~~~~~~~----~~-~~ggpvLvafv~G~~A~~le 495 (738)
T PLN02529 427 IDRLGFGL-LNKVAMVFPSVFWGEELDTFGCLNESS-----NKRGEFFLFYGY----HT-VSGGPALVALVAGEAAQRFE 495 (738)
T ss_pred HHcCCCce-eEEEEEEeCCccccCCCCceEEEeccC-----CCCceEEEEecC----CC-CCCCCEEEEEECchhhHHHh
Confidence 88887765 559999999998865433222222110 011112222211 11 22445666665432 22233
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 008069 541 GLAQKDYDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 541 ~~~~~~y~~~ke~~~~~il~~le~~~~P 568 (579)
.+ ..+++.+.+++.|. ++|+
T Consensus 496 ~l-------sdeeii~~vl~~L~-~ifg 515 (738)
T PLN02529 496 NT-------DPSTLLHRVLSVLR-GIYN 515 (738)
T ss_pred cC-------CHHHHHHHHHHHHH-HHhC
Confidence 22 23578889999998 7774
No 27
>PLN02568 polyamine oxidase
Probab=99.86 E-value=3e-19 Score=195.47 Aligned_cols=299 Identities=14% Similarity=0.088 Sum_probs=168.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-----CcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHH
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKG-----ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g-----~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~ 230 (579)
..+||+|||||++||+||..|++.| ++|+|+|+++++||++.++...|+.+|.|+++++|... +.+.++++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~----~~~~~l~~ 79 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGG----SPVYKIAQ 79 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCC----CHHHHHHH
Confidence 3589999999999999999999887 89999999999999999999999999999999998642 34778899
Q ss_pred HcCCceeEeeCC------CeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-Hhhh-hhhhccc
Q 008069 231 AVGCEMEVIPDP------TTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFN-ALNS-LELKSLE 302 (579)
Q Consensus 231 ~~g~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~-~~~~-~~~~~~~ 302 (579)
++|+.....+.. ....+...+|..+ .. .... .+..++........ .... ......
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEV--DP---SIVE-----------SISTLFRGLMDDAQGKLIEPSEVDEV- 142 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCC--CH---HHHH-----------HHHHHHHHHHHHhhcccccccccccc-
Confidence 999743221100 0111222223211 00 0111 11111111110000 0000 000000
Q ss_pred hhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhcC-------C----------H--H-HHHHHhhhhhhhh-cCCCCCc
Q 008069 303 EPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIK-------D----------P--Q-LLSFIDAECFIVS-TINALQT 361 (579)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-------~----------~--~-l~~~l~~~~~~~~-~~~~~~~ 361 (579)
+...+....... . ..-...++++++++.+. + + . ...++........ .......
T Consensus 143 d~~~~~~~~~~~----~--~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l 216 (539)
T PLN02568 143 DFVKLAAKAARV----C--ESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDL 216 (539)
T ss_pred cccccchhccch----h--ccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccH
Confidence 000000000000 0 00001133333332210 1 1 0 0111111110000 0011111
Q ss_pred hHHHHHHHH-hhhhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCC
Q 008069 362 PMINASMVL-CDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNAT 440 (579)
Q Consensus 362 ~~~~~~~~~-~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~ 440 (579)
......... .....+....+.||++.|+++|++.+. +.+|+++++|++|..+++.++ |.+.+|+++.||.||+|++
T Consensus 217 s~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~-V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 217 STLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVK-LHFADGSTMTADHVIVTVS 293 (539)
T ss_pred hhccccccCcceecCCCeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEE-EEEcCCCEEEcCEEEEcCC
Confidence 111000000 001123456788999999999999884 457999999999999888776 8888998899999999999
Q ss_pred hhHHHhh-----ccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCC
Q 008069 441 RWDTFGK-----LLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPP 485 (579)
Q Consensus 441 ~~~~~~~-----Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~ 485 (579)
+..+... +.-.+.||..+.+.++++.++. ..+|++.+++++|+.
T Consensus 294 l~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~-~~Ki~l~f~~~fW~~ 342 (539)
T PLN02568 294 LGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGV-VNKLFVELSPRPDGS 342 (539)
T ss_pred HHHHhhccccccceecCCCCHHHHHHHHhcCCce-eeEEEEEecCCCCCc
Confidence 8775421 2334479988888888777654 559999999998864
No 28
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.86 E-value=8.6e-23 Score=222.15 Aligned_cols=170 Identities=16% Similarity=0.026 Sum_probs=154.1
Q ss_pred cccccccCCC-CCccccccc--ccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCCCcccc
Q 008069 47 QRDAMQLGSS-SKPRIRNCM--IQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTLRSEDL 118 (579)
Q Consensus 47 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 118 (579)
..++..|+.| ++||+|||+ ++||++|.||.|..++| ..+|.++-.-.-.||.+| +||.. |||+|
T Consensus 1676 ~~~~~~qtarcmdcgtpfc~~~~gcpl~n~ip~~nelvf------k~~wk~al~~ll~tnnfpeftgrvcpap--cegac 1747 (2142)
T KOG0399|consen 1676 VSNLREQTARCMDCGTPFCQSDSGCPLGNIIPKFNELVF------KNQWKEALEQLLETNNFPEFTGRVCPAP--CEGAC 1747 (2142)
T ss_pred chhhHHHhhHHhcCCCccccCCCCCccccccccHHHHHH------HHHHHHHHHHHHhhCCCccccCccCCCC--cCcce
Confidence 3678899999 999999999 57999999999999999 999999999999999999 99987 99999
Q ss_pred ccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeE
Q 008069 119 GCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY 198 (579)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t 198 (579)
+++- .-.++.|.++|..+.|.++.++|-.+-++.....++|+|||+|++||+||..|-+.|+.|+|+||.+++||...
T Consensus 1748 tlgi-ie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~- 1825 (2142)
T KOG0399|consen 1748 TLGI-IEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM- 1825 (2142)
T ss_pred eeec-ccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee-
Confidence 9994 56899999999999999999999887666666789999999999999999999999999999999999999987
Q ss_pred EeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 199 YERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 199 ~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
|.+|.+++| +-..++..+++.+-|+++.
T Consensus 1826 ygipnmkld-----------k~vv~rrv~ll~~egi~f~ 1853 (2142)
T KOG0399|consen 1826 YGIPNMKLD-----------KFVVQRRVDLLEQEGIRFV 1853 (2142)
T ss_pred ecCCccchh-----------HHHHHHHHHHHHhhCceEE
Confidence 889998888 3356677889999998764
No 29
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.86 E-value=1.3e-22 Score=218.89 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=136.8
Q ss_pred hhhhccccccccccCCC-CCcc--cccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPR--IRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGS 111 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 111 (579)
|-..+|+.++|+.||+| ++|. .|+|+..||+|++||.|+.+.. ++++.+|+.+...+|++| +||++
T Consensus 11 e~~~~~~~~~~~~ea~rc~~c~~~~~~C~~~CP~~~~i~~~~~~~~------~g~~~~A~~~~~~~~p~p~~~grvC~~~ 84 (449)
T TIGR01316 11 EAALGYTEQLALVEAQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQ------EGDFKGAVDIIKTTSLLPAICGRVCPQE 84 (449)
T ss_pred hhccCcCHHHHHHHHhhCcCccCCCCChhhhCCCCCCHHHHHHHHH------CCCHHHHHHHHHHhCChhHHhccCCCCc
Confidence 34568999999999999 9999 9999999999999999999999 999999999999999999 99999
Q ss_pred CCCccccccccc---cccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEec
Q 008069 112 TLRSEDLGCGES---ERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (579)
Q Consensus 112 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~ 188 (579)
..||++|.++.. ...++.|..+++++.+.....++...........+||+|||||++||++|..|++.|++|+|+|+
T Consensus 85 ~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 85 RQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEA 164 (449)
T ss_pred cchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence 999999998741 34799999999999987766554433323344578999999999999999999999999999999
Q ss_pred CCCCCcceeEEeeCCe
Q 008069 189 YVIPGGSSGYYERDGY 204 (579)
Q Consensus 189 ~~~~gg~~~t~~~~g~ 204 (579)
.+.+||.+. +.++.+
T Consensus 165 ~~~~GG~l~-~gip~~ 179 (449)
T TIGR01316 165 LHKPGGVVT-YGIPEF 179 (449)
T ss_pred CCCCCcEee-ecCCCc
Confidence 999999765 444443
No 30
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.86 E-value=3.8e-19 Score=199.34 Aligned_cols=344 Identities=20% Similarity=0.257 Sum_probs=197.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCe----eeccccccccCCCCCCChHHHHHHHHH
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGY----TFDVGSSVMFGFSDKGNLNLITQALAA 231 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~----~~~~G~~~~~g~~~~~~~~~~~~~l~~ 231 (579)
...+|+|||||++||++|..|++.|++|+|+|+.+++||++.++...|+ .+|.|++++++... +.+..++++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~----npl~~l~~~ 312 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGING----NPLGVLARQ 312 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCc----cHHHHHHHH
Confidence 4689999999999999999999999999999999999999998887653 68999999997532 235778889
Q ss_pred cCCceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 232 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
+|++.....+. ..+.+.+|..+... ...... ..+..+++...+....+.. ...
T Consensus 313 lgl~~~~~~~~--~~~~~~dG~~~~~~--~~~~v~----------~~f~~lL~~~~klr~~~~~-~~~------------ 365 (808)
T PLN02328 313 LGLPLHKVRDI--CPLYLPDGKAVDAE--IDSKIE----------ASFNKLLDRVCKLRQAMIE-EVK------------ 365 (808)
T ss_pred cCCceEecCCC--ceEEeCCCcCcchh--hhhhHH----------HHHHHHHHHHHHHHHhhhh-ccc------------
Confidence 99876654432 33444566543211 110000 0111222211111110000 000
Q ss_pred hcChhhhhHHhhhccccHHHHHHHh------cCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhh---hhcCccceeC
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKY------IKDPQLLSFIDAECFIVSTINALQTPMINASMVLCD---RHFGGINYPV 382 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~p~ 382 (579)
....++.++++++ ..++.-+.+++................+........ ...+..+...
T Consensus 366 ------------~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~ 433 (808)
T PLN02328 366 ------------SVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIP 433 (808)
T ss_pred ------------ccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEEC
Confidence 0012333333211 122322233221111000011111111110000000 0112355678
Q ss_pred CChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHH
Q 008069 383 GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENF 461 (579)
Q Consensus 383 gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~-~Ll~~~~lp~~~~~~ 461 (579)
||++.|+++|++.+ .|++|++|++|...+++|. | +.+|+++.||.||+|+++..+-. .+.-.+.+|..+.+.
T Consensus 434 GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV~-V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~A 506 (808)
T PLN02328 434 GGNDTFVRELAKDL-----PIFYERTVESIRYGVDGVI-V-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDA 506 (808)
T ss_pred CcHHHHHHHHHhhC-----CcccCCeeEEEEEcCCeEE-E-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHH
Confidence 99999999998877 3999999999999887764 4 45788899999999999877531 222234689888888
Q ss_pred HHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccch-hhhc
Q 008069 462 QKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSI-EDWE 540 (579)
Q Consensus 462 ~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~-~~w~ 540 (579)
++++.++.. .+|++.++.++|..+.....++..+ . ...+.+++ ..+.. .+.|..++..++.... ..|.
T Consensus 507 I~~l~yG~~-~KV~L~F~~~FW~~~~d~fG~l~~d-~----s~rG~~~l-f~s~s----~~~G~~vLvafv~G~~A~~~e 575 (808)
T PLN02328 507 IQRLGYGLL-NKVALLFPYNFWGGEIDTFGHLTED-P----SMRGEFFL-FYSYS----SVSGGPLLIALVAGDAAVKFE 575 (808)
T ss_pred HHcCCCcce-EEEEEEeCCccccCCCCceEEEeec-C----CCCceEEE-EecCC----CCCCCcEEEEEecChhhHHHh
Confidence 888887664 5999999999986543332333221 0 01111222 11211 1245566766664322 2232
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 008069 541 GLAQKDYDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 541 ~~~~~~y~~~ke~~~~~il~~le~~~~P 568 (579)
.+ ..++..+.+++.|. ++|+
T Consensus 576 ~l-------sdeE~v~~vL~~Lr-~ifg 595 (808)
T PLN02328 576 TL-------SPVESVKRVLQILR-GIFH 595 (808)
T ss_pred cC-------CHHHHHHHHHHHHH-HHhC
Confidence 22 23567888999998 6764
No 31
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.86 E-value=6.7e-19 Score=188.58 Aligned_cols=337 Identities=19% Similarity=0.215 Sum_probs=199.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCee--eccccccccCCCCCCChHHHHHHHHHcCCceeEeeCCCeEEEE
Q 008069 171 VAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT--FDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFH 248 (579)
Q Consensus 171 ~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~--~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 248 (579)
+||+.|+++|++|+|+|+.+++||++.|+..+|+. +|.|+|++.+.. ..+.++++++|++...........+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~-----~~~~~l~~~lgl~~~~~~~~~~~~~~ 75 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAY-----TNLLALLRRIGAEPRLQGPRLPLPFY 75 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEccc-----HHHHHHHHHhCCchhhhcccCCccee
Confidence 48999999999999999999999999999988765 999999998532 34778999999875533111122333
Q ss_pred cCCCceEEecCC----HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhhhhHHhhh
Q 008069 249 LPNDLSVRVHRE----YSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYY 324 (579)
Q Consensus 249 ~~~g~~~~~~~~----~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (579)
.+++....+..+ .......+.....-......++....... ... ....+
T Consensus 76 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------------~~~-----~~~~~ 128 (419)
T TIGR03467 76 DPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLAL----------------------RRT-----RFRAL 128 (419)
T ss_pred cCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHH----------------------Hhc-----Ccccc
Confidence 333332111110 00000111110000111111111100000 000 00123
Q ss_pred ccccHHHHHHHhcCCHHHH-HHHhhhhhhhhcCCCCCchHHHHHHHHhhhh-----cCccceeCCChHHHH-HHHHHHHH
Q 008069 325 LPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDRH-----FGGINYPVGGVGGIA-KSLAKGLA 397 (579)
Q Consensus 325 ~~~s~~~~l~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~p~gG~~~l~-~aL~~~l~ 397 (579)
...++.+++++++.++.+. .++...+....+..+.++++......+.... ....++|+||+..+. ++|++.++
T Consensus 129 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~ 208 (419)
T TIGR03467 129 DDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD 208 (419)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence 4578999999987665544 4666555555556677777665443332111 124688999987765 55999999
Q ss_pred HcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCeEEEEEe
Q 008069 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMG 477 (579)
Q Consensus 398 ~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg 477 (579)
+.|++|++|++|++|..+++++..+...+|+++.||.||+|++++.+ .+|++.+ ...+.+..+.+.+ ..+++++
T Consensus 209 ~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll~~~----~~~~~l~~~~~~~-~~~v~l~ 282 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHA-ASLLPGE----DLGALLTALGYSP-ITTVHLR 282 (419)
T ss_pred HcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHH-HHhCCCc----hHHHHHhhcCCcc-eEEEEEE
Confidence 99999999999999999888765333357778999999999998876 5677641 3344566666654 5699999
Q ss_pred ecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCChhhHHHHHHHHHHH
Q 008069 478 VKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADE 557 (579)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~~~y~~~ke~~~~~ 557 (579)
+++++|.+. ..+.+. . .+..+++ .. +. ..+ ....+.+++... ..+. +..++++.+.
T Consensus 283 ~~~~~~~~~-~~~~~~-~-------~~~~~~~-~~-~~----~~~-~~~~~~~~~~~~-~~~~-------~~~~e~~~~~ 338 (419)
T TIGR03467 283 LDRAVRLPA-PMVGLV-G-------GLAQWLF-DR-GQ----LAG-EPGYLAVVISAA-RDLV-------DLPREELADR 338 (419)
T ss_pred eCCCcCCCC-Ceeeec-C-------CceeEEE-EC-Cc----CCC-CCCEEEEEEecc-hhhc-------cCCHHHHHHH
Confidence 999875321 111211 1 1111121 11 11 111 122333333321 2222 2235889999
Q ss_pred HHHHHHHhhCCCC
Q 008069 558 IINRLENKLFPGL 570 (579)
Q Consensus 558 il~~le~~~~P~l 570 (579)
+++.|+ +++|+.
T Consensus 339 ~l~~l~-~~~~~~ 350 (419)
T TIGR03467 339 IVAELR-RAFPRV 350 (419)
T ss_pred HHHHHH-HhcCcc
Confidence 999999 899876
No 32
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.86 E-value=1.4e-22 Score=231.83 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=147.0
Q ss_pred hhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
|-.+.|+.++|++||+| ++|+.++|...||.|+.||.|+.+.. +++|.+|+.+...+|++| +||++.+
T Consensus 314 ev~~~~~~~~a~~ea~rC~~c~~~~C~~~Cp~~~~i~~~~~~~~------~g~~~~a~~~~~~~~p~p~~~grvC~~~~~ 387 (752)
T PRK12778 314 EVNLGLTKEQAMTEAKRCLDCKNPGCVEGCPVGIDIPRFIKNIE------RGNFLEAAKILKETSALPAVCGRVCPQEKQ 387 (752)
T ss_pred hccCCCCHHHHHHHHHHhhcCCCCcccccCcCCCCHHHHHHHHH------CCCHHHHHHHHHhhCCchhHhcCcCCCcCc
Confidence 34468999999999999 99999999999999999999999999 999999999999999999 9999999
Q ss_pred CccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
||+.|+++..+-.+++|..+++++.+......+...........+||+|||||++||+||..|++.|++|+|||+.+.+|
T Consensus 388 Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 388 CESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred hHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 99999988543379999999999988764443222122223467899999999999999999999999999999999999
Q ss_pred cceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 194 GSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 194 g~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
|... +.++.|++. +.......+.++++|+++.
T Consensus 468 G~l~-~gip~~rlp-----------~~~~~~~~~~l~~~gv~~~ 499 (752)
T PRK12778 468 GVLK-YGIPEFRLP-----------KKIVDVEIENLKKLGVKFE 499 (752)
T ss_pred Ceee-ecCCCCCCC-----------HHHHHHHHHHHHHCCCEEE
Confidence 9865 555555433 1122334456677787653
No 33
>PLN03000 amine oxidase
Probab=99.85 E-value=3e-18 Score=191.98 Aligned_cols=344 Identities=18% Similarity=0.211 Sum_probs=197.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeC----CeeeccccccccCCCCCCChHHHHHHHHH
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD----GYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~----g~~~~~G~~~~~g~~~~~~~~~~~~~l~~ 231 (579)
...+|+|||||++||++|..|++.|++|+|+|+.+++||++.|.... |+.+|+|++++++.. .+.+..++++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~----~npl~~L~~q 258 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTL----GNPLGIIARQ 258 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCC----ccHHHHHHHH
Confidence 46899999999999999999999999999999999999999988754 578999999999753 2346677889
Q ss_pred cCCceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 232 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
+|+++....+. ..++..+|..+. .+..... ...+..+++...++........ ...+. ...
T Consensus 259 lgl~l~~~~~~--~~ly~~~Gk~v~--~~~~~~v----------e~~fn~lLd~~~~lr~l~~~~~---~D~SL---g~a 318 (881)
T PLN03000 259 LGSSLYKVRDK--CPLYRVDGKPVD--PDVDLKV----------EVAFNQLLDKASKLRQLMGDVS---MDVSL---GAA 318 (881)
T ss_pred cCCceeecCCC--CeEEEeCCcCCc--hhhhhhH----------HHHHHHHHHHHHHHHHHhcccC---cCCcH---HHH
Confidence 99876543322 223334554321 1111000 0011122222211111110000 00000 000
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhcC---CHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhh---hhcCccceeCCCh
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKYIK---DPQLLSFIDAECFIVSTINALQTPMINASMVLCD---RHFGGINYPVGGV 385 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~p~gG~ 385 (579)
+ +.+.+++. .+.-+.++......+..........+........ ...+..+...||+
T Consensus 319 L------------------e~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~ 380 (881)
T PLN03000 319 L------------------ETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGN 380 (881)
T ss_pred H------------------HHHHHHHcccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCH
Confidence 0 01111110 0111111111100000111111111111111110 1123345678999
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHHHHh
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKL 464 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~-~Ll~~~~lp~~~~~~~~~ 464 (579)
+.|+++|++.+ .|+++++|++|.++++++. |++. ++++.||+||+|+++..+-. .+.-.+.||+.+++.+++
T Consensus 381 ~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~-V~~~-~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~r 453 (881)
T PLN03000 381 GRLVQALAENV-----PILYEKTVQTIRYGSNGVK-VIAG-NQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKR 453 (881)
T ss_pred HHHHHHHHhhC-----CcccCCcEEEEEECCCeEE-EEEC-CcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHc
Confidence 99999999877 4999999999999888776 6554 35799999999999876521 233344699988888888
Q ss_pred hccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCC-CCeeEEEEEeccc-hhhhcCC
Q 008069 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP-EGHHILHIFTICS-IEDWEGL 542 (579)
Q Consensus 465 ~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP-~G~~~l~~~~~~~-~~~w~~~ 542 (579)
+.++. ..+|++.|++.+|+.+.....++..+. ...+.+++.. + +.| .|..++..++..+ ...|..+
T Consensus 454 L~~G~-l~KViL~Fd~~FW~~d~~~FG~l~~~~-----~~rg~~~~f~-s-----~sp~~G~pVLvafv~Gd~A~~le~l 521 (881)
T PLN03000 454 LGFGL-LNKVAMLFPYVFWSTDLDTFGHLTEDP-----NYRGEFFLFY-S-----YAPVAGGPLLIALVAGEAAHKFETM 521 (881)
T ss_pred CCCcc-eEEEEEEeCCccccCCCCceeEEecCC-----CCCceeEEEe-C-----CCCCCCCcEEEEEecCchhHHhhcC
Confidence 87765 569999999999876654444443221 0011122221 2 223 4666777776543 2334433
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhCC
Q 008069 543 AQKDYDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 543 ~~~~y~~~ke~~~~~il~~le~~~~P 568 (579)
+ .+++.+.+++.|. ++|+
T Consensus 522 S-------deE~ve~vl~~Lr-kifg 539 (881)
T PLN03000 522 P-------PTDAVTRVLHILR-GIYE 539 (881)
T ss_pred C-------HHHHHHHHHHHHH-HHhC
Confidence 2 3578889999999 7775
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.84 E-value=5.9e-19 Score=188.07 Aligned_cols=327 Identities=17% Similarity=0.277 Sum_probs=197.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCC--------------------eeecccccccc
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDG--------------------YTFDVGSSVMF 214 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g--------------------~~~~~G~~~~~ 214 (579)
+..+||+|||+|.+|+.+|..|+++|++|+++||++..||+..|+...+ |.+|+.++.++
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 3469999999999999999999999999999999999999999875333 23444454444
Q ss_pred CCCCCCChHHHHHHHHHcCCceeEeeCCCeEEEEc-CCCceEEecCC-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Q 008069 215 GFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHL-PNDLSVRVHRE-YSDFVAELTSKFPHEKEGVLAFYGECWKIFNA 292 (579)
Q Consensus 215 g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~ 292 (579)
. ...+.++|...++.-.+-.......+.+ .+|....+|.+ .+.+...+...+ ++..+.+|+..+.....
T Consensus 82 ~------~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~~- 152 (443)
T PTZ00363 82 A------SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYDE- 152 (443)
T ss_pred c------CChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhcc-
Confidence 2 1245677777775432211111122222 56666667664 334443333322 55566666655432110
Q ss_pred hhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHH---
Q 008069 293 LNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV--- 369 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--- 369 (579)
.++ ..+ ....+...++.++++++..++..+.++.............+.++..+...
T Consensus 153 ---------~~~-~~~-----------~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~ 211 (443)
T PTZ00363 153 ---------NDP-ETH-----------KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKL 211 (443)
T ss_pred ---------CCh-hhh-----------cccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHH
Confidence 000 000 00012246889999999999988887654433321111122233222211
Q ss_pred -H---hhhhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeC-CEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 370 -L---CDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 370 -~---~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
. ......++.||.||+++++++|.+.+...|++++++++|++|..++ +++.+|++++|++++|+.||++...+.
T Consensus 212 y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p- 290 (443)
T PTZ00363 212 YMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP- 290 (443)
T ss_pred HHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc-
Confidence 1 1111134578999999999999999999999999999999999875 678889999999999999998555321
Q ss_pred HhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCC--CCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCC
Q 008069 445 FGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPP--DTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP 522 (579)
Q Consensus 445 ~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP 522 (579)
. ... ........-..++.+. +. +.....++++.. .+.+ .+.+|+..-+. +..-+|
T Consensus 291 ------~-~~~-----------~~~~v~R~i~i~~~pi-~~~~~~~~~~i~~P~~--~~~~-~~~i~v~~~s~-~~~~cp 347 (443)
T PTZ00363 291 ------D-KVK-----------KVGKVIRCICILNHPI-PNTNNANSCQIIIPQK--QLGR-KNDIYIMLVSS-NHGVCP 347 (443)
T ss_pred ------c-ccc-----------cccEEEEEEEEEcccc-cccCcCccEEEEECCc--ccCC-CCCEEEEEecC-CCCcCC
Confidence 1 000 0111223334455554 21 111224555542 1111 13477755443 345679
Q ss_pred CCeeEEEEEeccc
Q 008069 523 EGHHILHIFTICS 535 (579)
Q Consensus 523 ~G~~~l~~~~~~~ 535 (579)
+|+-++++++...
T Consensus 348 ~g~~i~~~st~~~ 360 (443)
T PTZ00363 348 KGKYIAIISTTVE 360 (443)
T ss_pred CCcEEEEEEEecC
Confidence 9999999998753
No 35
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.84 E-value=3.4e-19 Score=190.56 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=109.3
Q ss_pred eeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHh-hccCCCCCChHH
Q 008069 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEE 458 (579)
Q Consensus 380 ~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~-~Ll~~~~lp~~~ 458 (579)
...|+...+... .+...|++|++|++|++|..++++++ |.+.+|++++||.||+|+++..+.. .+.+ .+|...
T Consensus 206 ~~~g~~~~~~~~---~~~~~g~~i~l~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~~ 279 (450)
T PF01593_consen 206 VGMGGLSLALAL---AAEELGGEIRLNTPVTRIEREDGGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPEDK 279 (450)
T ss_dssp EETTTTHHHHHH---HHHHHGGGEESSEEEEEEEEESSEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHHH
T ss_pred ecccchhHHHHH---HHhhcCceeecCCcceeccccccccc-cccccceEEecceeeecCchhhhhhhhhcc--cccccc
Confidence 344444444443 34445789999999999999999987 8889999999999999999987654 3444 467666
Q ss_pred HHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccc-hh
Q 008069 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IE 537 (579)
Q Consensus 459 ~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~-~~ 537 (579)
.+.++.+.+.+ ..+|+++++.+.|+++.....++..+. .....++..++..++. ++..++..++..+ ..
T Consensus 280 ~~a~~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 349 (450)
T PF01593_consen 280 RRAIENLPYSS-VSKVFLGFDRPFWPPDIDFFGILYSDG------FSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAP 349 (450)
T ss_dssp HHHHHTEEEEE-EEEEEEEESSGGGGSTTTESEEEEESS------TSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHH
T ss_pred cccccccccCc-ceeEEEeeecccccccccccceecccC------ccccccccccccCccc---ccCCcceeeeeccccc
Confidence 66666666554 459999999999877543344444432 1122445555554544 3455555555433 23
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHhhCCC
Q 008069 538 DWEGLAQKDYDAKKELVADEIINRLENKLFPG 569 (579)
Q Consensus 538 ~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~ 569 (579)
.|.+. .++++.+.++++|+ +++|.
T Consensus 350 ~~~~~-------~~e~~~~~~~~~L~-~~~~~ 373 (450)
T PF01593_consen 350 EWDDL-------SDEEILERVLDDLR-KILPG 373 (450)
T ss_dssp HHTTS-------CHHHHHHHHHHHHH-HHHTT
T ss_pred hhccc-------chhhhHHHHHHHhh-hcccc
Confidence 44443 34678899999999 78884
No 36
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.84 E-value=9e-22 Score=213.70 Aligned_cols=176 Identities=18% Similarity=0.131 Sum_probs=146.0
Q ss_pred hhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
|..++|++++|+++|+| ++|+.+.|+..||.|+.||.|+.+.. +++|.+|..+...+|++| +||+.
T Consensus 29 e~~~~~~~~~~~~~a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~------~~~~~~a~~~~~~~~p~~~~~g~vC~~~-- 100 (471)
T PRK12810 29 EFYEPFSEEQAKIQAARCMDCGIPFCHWGCPVHNYIPEWNDLVY------RGRWEEAAERLHQTNNFPEFTGRVCPAP-- 100 (471)
T ss_pred hhhcccCHHHHHHHHHhccCCCCCcccccCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCChhHHhcCcCCch--
Confidence 67789999999999999 99999999999999999999999999 999999999999999999 99999
Q ss_pred CccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
||.+|.++. ...+++|..+++++++.....++..+..+.....+||+|||||++|+++|..|++.|++|+|+|+.+.+|
T Consensus 101 Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 101 CEGACTLNI-NFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred hHHhccCCC-CCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 999999885 4589999999999999877666522222333456899999999999999999999999999999999999
Q ss_pred cceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 194 GSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 194 g~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
|... +.++.+... ........+.+..+|+++
T Consensus 180 G~l~-~gip~~~~~-----------~~~~~~~~~~~~~~gv~~ 210 (471)
T PRK12810 180 GLLR-YGIPDFKLE-----------KEVIDRRIELMEAEGIEF 210 (471)
T ss_pred ceee-ecCCcccCC-----------HHHHHHHHHHHHhCCcEE
Confidence 9765 444443222 112223345667777654
No 37
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.6e-19 Score=181.11 Aligned_cols=348 Identities=18% Similarity=0.139 Sum_probs=200.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~ 234 (579)
....||+|||+|.+||++|+.|.+.|++|+|+|..+++||++.+.+..|-..|.|.+++.. ..+.+....++.|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-----~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-----THDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-----cchhhhhhHHhcCC
Confidence 3568999999999999999999999999999999999999999888888888988777652 45567788889998
Q ss_pred ceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhh-hhhccchhhHHHhhhhc
Q 008069 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSL-ELKSLEEPIYLFGQFFK 313 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 313 (579)
..+...........+..... ..+..+ .+ ....++.. ...+....... ...+...+
T Consensus 80 ~~~~fi~~g~~~~~~~~~~~----~~p~~~-------~~-~~~d~~~~---~~~~~~~a~~~~~~~~~~t~--------- 135 (450)
T COG1231 80 PLEPFIRDGDNVIGYVGSSK----STPKRS-------LT-AAADVRGL---VAELEAKARSAGELDPGLTP--------- 135 (450)
T ss_pred CCCceeccCccccccccccc----ccchhc-------cc-hhhhhcch---hhhhhhhhhcccccCcccCc---------
Confidence 77654432111111110000 000000 00 00000000 00000000000 00000000
Q ss_pred ChhhhhHHhhhccccHHHH----HHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHH---HHHHHhh--h-----hcCccc
Q 008069 314 RPLECLTLAYYLPQNAGNI----ARKYIKDPQLLSFIDAECFIVSTINALQTPMIN---ASMVLCD--R-----HFGGIN 379 (579)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~----l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~--~-----~~~g~~ 379 (579)
...+.+.+++.+| .+.+-.++..+-.. +...+.+..... ....... . ......
T Consensus 136 ------~~~e~~~~~~~~W~~~~~~~~~~~~~a~~~~-------g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~ 202 (450)
T COG1231 136 ------EDRELDLESLAAWKTSSLRGLSRDPGARVSP-------GPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQML 202 (450)
T ss_pred ------chhhhhhHHHHhhhhccccccccCccceecc-------CCCCcccccchhhhhhhhhhhhccccccccccchhh
Confidence 0000111222233 11111111111000 001111111000 0000000 0 001233
Q ss_pred eeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChHHH
Q 008069 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEE 459 (579)
Q Consensus 380 ~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~ 459 (579)
.+.|||+.+++++++.+ |-.|+++++|.+|..++++|+ |++.+.+++.+|.+|+|.|+..+ .++.-.+.+|++.+
T Consensus 203 ~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~~gV~-Vt~~~~~~~~ad~~i~tiPl~~l-~qI~f~P~l~~~~~ 277 (450)
T COG1231 203 QRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDGDGVT-VTADDVGQYVADYVLVTIPLAIL-GQIDFAPLLPAEYK 277 (450)
T ss_pred ccCccHHHHHHHHHHHh---hceEEecCceeeEEEcCCeEE-EEeCCcceEEecEEEEecCHHHH-hhcccCCCCCHHHH
Confidence 45599999999999888 668999999999999999887 88877557999999999998654 56665557888888
Q ss_pred HHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEE-e-ccchh
Q 008069 460 NFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF-T-ICSIE 537 (579)
Q Consensus 460 ~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~-~-~~~~~ 537 (579)
++.+...|++ ..++.+.+++++|...-.+....+.++ + ..+++.+|. +. -+|..++.-+ . .....
T Consensus 278 ~a~~~~~y~~-~~K~~v~f~rpFWee~~~l~G~~~tD~------~--~~~i~~~s~-~~---~~G~gVl~g~~~~g~~A~ 344 (450)
T COG1231 278 QAAKGVPYGS-ATKIGVAFSRPFWEEAGILGGESLTDL------G--LGFISYPSA-PF---ADGPGVLLGSYAFGDDAL 344 (450)
T ss_pred HHhcCcCcch-heeeeeecCchhhhhcccCCceEeecC------C--cceEecCcc-cc---CCCceEEEeeeeccccce
Confidence 8888866655 459999999999865321333444331 1 256677765 32 2566666552 2 23445
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCC
Q 008069 538 DWEGLAQKDYDAKKELVADEIINRLENKLFPGL 570 (579)
Q Consensus 538 ~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l 570 (579)
.|...++ ++.++.++.++. ++||+-
T Consensus 345 ~~~~~~~-------~~r~~~vl~~l~-~~~g~~ 369 (450)
T COG1231 345 VIDALPE-------AERRQKVLARLA-KLFGDE 369 (450)
T ss_pred eEecCCH-------HHHHHHHHHhHh-hhCChh
Confidence 6766544 467888999999 899843
No 38
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=2.3e-18 Score=185.44 Aligned_cols=358 Identities=20% Similarity=0.191 Sum_probs=190.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCee-eccccccccCCCCCCChHHHHHHHHHcC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT-FDVGSSVMFGFSDKGNLNLITQALAAVG 233 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~-~~~G~~~~~g~~~~~~~~~~~~~l~~~g 233 (579)
...++|||||||++||+||..|...|++|+|+|+.+++||++.|+.-.+.. +|+|++++.|.... .+.-+.+++|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~n----pl~~l~~qlg 88 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNN----PLALLSKQLG 88 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCcc----HHHHHHHHhC
Confidence 346899999999999999999999999999999999999999999877666 99999999986643 5777888999
Q ss_pred CceeEeeCCCeEEEEcCCCceEE-ecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 008069 234 CEMEVIPDPTTVHFHLPNDLSVR-VHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
++.....+.... +...++.... .....+.. ...++.........+..........+ +.+..
T Consensus 89 l~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~~ 150 (501)
T KOG0029|consen 89 LELYKVRDTCPL-FNENGGESDKVFDDFVEQE--------------FNRLLDDASNLEQRLDNEIIGISDDS---FGEAL 150 (501)
T ss_pred cccceecccccc-cccCCcccccccccchhhh--------------hHHHHHHHhhhhhhhhhccccccccc---HHHHH
Confidence 886554332211 1111111110 00011110 11111111111111100000000000 00000
Q ss_pred cChhhhhHHhhhccccHHHHHHHhcC-CHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcCc---cceeCCChHHH
Q 008069 313 KRPLECLTLAYYLPQNAGNIARKYIK-DPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGG---INYPVGGVGGI 388 (579)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~l~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~p~gG~~~l 388 (579)
... ..... ......+...... +..+...+...+.. ...............+...++ .....+|...+
T Consensus 151 ~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v 221 (501)
T KOG0029|consen 151 EAF---LSASR--LMKTLLELLLEGEADKVLQWHLVNLELT----FIAHLENASARLWDQDELFGGGGIHLLMKGGYEPV 221 (501)
T ss_pred HhH---HHHHH--HHHhhHHHhhhhhhhHHHHHHHHHHHHH----hhccHhHhhHHhhhhhhhcccccchhHhhCCccHH
Confidence 000 00000 0000000000000 01111111111000 000001111111111111111 14557888888
Q ss_pred HHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHHHHhhcc
Q 008069 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKLYVK 467 (579)
Q Consensus 389 ~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~-~Ll~~~~lp~~~~~~~~~~~~ 467 (579)
...++. |.+|+++..|.+|.+.++....|++.++..+.+|.||++++...+-. .+...+.+|..+.++++++..
T Consensus 222 ~~~la~-----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~ 296 (501)
T KOG0029|consen 222 VNSLAE-----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGF 296 (501)
T ss_pred HhhcCC-----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCC
Confidence 887776 78999999999999977653346666777799999999999877532 244456799888888888875
Q ss_pred CCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEec-cchhhhcCCChhh
Q 008069 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTI-CSIEDWEGLAQKD 546 (579)
Q Consensus 468 ~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~-~~~~~w~~~~~~~ 546 (579)
+. .-+|.|.|+..+|+++.+....+.... .....+ .+-+..+-. |...+...+. .....|.
T Consensus 297 g~-~~Kv~l~F~~~fW~~~~d~fg~~~~~~------~~~~~~-~f~~~~~~~----~~~~l~~~~~~~~a~~~~------ 358 (501)
T KOG0029|consen 297 GL-VNKVILEFPRVFWDQDIDFFGIVPETS------VLRGLF-TFYDCKPVA----GHPVLMSVVVGEAAERVE------ 358 (501)
T ss_pred Cc-eeEEEEEeccccCCCCcCeEEEccccc------cccchh-hhhhcCccC----CCCeEEEEehhhhhHHHh------
Confidence 44 558999999999976554322221111 111111 111111111 2223333332 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q 008069 547 YDAKKELVADEIINRLENKLFP 568 (579)
Q Consensus 547 y~~~ke~~~~~il~~le~~~~P 568 (579)
...+++.++.++..|+ ++|+
T Consensus 359 -~~~~~~~~~~~~~~l~-k~f~ 378 (501)
T KOG0029|consen 359 -TLSDSEIVKKAMKLLR-KVFG 378 (501)
T ss_pred -cCCHHHHHHHHHHHHH-HHhc
Confidence 3455789999999999 8888
No 39
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.82 E-value=2.6e-21 Score=210.31 Aligned_cols=183 Identities=18% Similarity=0.094 Sum_probs=149.9
Q ss_pred cccchhhhhhhhhccccccccccCCC-CCcccccccc--cccccccccccccccccccccCCccccccccccCCCCCCC-
Q 008069 31 NRSKFTALSNKVQSFGQRDAMQLGSS-SKPRIRNCMI--QSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS- 106 (579)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (579)
+|.+. ..|-..+|++++|.++|+| ++|..|+|+. .||+|+.||.|+.+.. ++++.+++.+...+|++|
T Consensus 20 ~~~~~--~~~~~~~~~~~~~~~~~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~------~g~~~~a~~~~~~~~p~p~ 91 (485)
T TIGR01317 20 TRLKD--WKEFTNPFDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVF------RGRWKEALDRLHATNNFPE 91 (485)
T ss_pred HHhhC--HHHHhCCCCHHHHHHHHHhccCCCCCCCCCCCCCCCCCcHHHHHHHHH------CCCHHHHHHHHHhhCCchh
Confidence 45442 5667789999999999999 9999999999 9999999999999999 999999999999999999
Q ss_pred ----CCCCCCCCccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCc
Q 008069 107 ----NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGAR 182 (579)
Q Consensus 107 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~ 182 (579)
+||+ .||++|.++.. ..++.|..+++++.+......+...........++|+|||||++|+++|..|++.|++
T Consensus 92 ~~grvC~~--~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~ 168 (485)
T TIGR01317 92 FTGRVCPA--PCEGACTLGIS-EDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHT 168 (485)
T ss_pred HHhCcCCh--hhHHhccCCCC-CCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCe
Confidence 9998 59999998854 4799999999999887776666444322334458999999999999999999999999
Q ss_pred EEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 183 VLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 183 v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
|+|+|+.+.+||.+. +.++++.++. .......+.++++|+++
T Consensus 169 V~v~e~~~~~gG~l~-~gip~~~~~~-----------~~~~~~~~~~~~~Gv~~ 210 (485)
T TIGR01317 169 VTVFEREDRCGGLLM-YGIPNMKLDK-----------AIVDRRIDLLSAEGIDF 210 (485)
T ss_pred EEEEecCCCCCceee-ccCCCccCCH-----------HHHHHHHHHHHhCCCEE
Confidence 999999999999875 4455543321 12223446677778765
No 40
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.81 E-value=5e-21 Score=207.40 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=144.5
Q ss_pred hhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
|-...|+.++|++||+| ++|+.+.|+..||.|++||.|+.+.. +++|.+|..+...+|++| +||.+.+
T Consensus 25 e~~~~~~~~~~~~e~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~------~~~~~~a~~~~~~~~p~~~~~g~vc~~~~~ 98 (457)
T PRK11749 25 EVAPGYTPEEAIEEASRCLQCKDAPCVKACPVSIDIPEFIRLIA------EGNLKGAAETILETNPLPAVCGRVCPQERL 98 (457)
T ss_pred hhcCCCCHHHHHHHHHHhhCCCCCcccccCCCcCCHHHHHHHHH------CCCHHHHHHHHHHhCCchhhhcCcCCCccC
Confidence 45688999999999999 99999999999999999999999999 999999999999999999 9999999
Q ss_pred CccccccccccccchhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
|+..|.++.. ..++.|..+++++.+......+.... ......++|+|||||++||++|..|++.|++|+|+|+.+.+|
T Consensus 99 C~~~C~~~~~-~~~v~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g 176 (457)
T PRK11749 99 CEGACVRGKK-GEPVAIGRLERYITDWAMETGWVLFK-RAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (457)
T ss_pred HHHHhcCCCC-CCCcchHHHHHHHHHHHHhcCCCCCC-CCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 9999998743 56889999999988776655553221 223456899999999999999999999999999999999999
Q ss_pred cceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 194 GSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 194 g~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
|... +..+++... ........+.++.+|+++
T Consensus 177 G~l~-~gip~~~~~-----------~~~~~~~~~~l~~~gv~~ 207 (457)
T PRK11749 177 GLLR-YGIPEFRLP-----------KDIVDREVERLLKLGVEI 207 (457)
T ss_pred cEee-ccCCCccCC-----------HHHHHHHHHHHHHcCCEE
Confidence 8754 333333211 112233455667777654
No 41
>PLN02976 amine oxidase
Probab=99.81 E-value=5.7e-17 Score=186.08 Aligned_cols=377 Identities=17% Similarity=0.145 Sum_probs=197.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEee-CCeeeccccccccCCCCCC----ChHHHHHHH
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKG----NLNLITQAL 229 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~~~G~~~~~g~~~~~----~~~~~~~~l 229 (579)
...+||+|||||++|+++|+.|++.|++|+|||+.+.+||++.+... .|+.+|.|+++++|..... .++....++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la 770 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLIC 770 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHH
Confidence 34689999999999999999999999999999999999999887654 6899999999998754321 123344577
Q ss_pred HHcCCceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhh-hhhhccchhhH-H
Q 008069 230 AAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNS-LELKSLEEPIY-L 307 (579)
Q Consensus 230 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~-~~~~~~~~~~~-~ 307 (579)
.++|+.+......... +...+|..+ +.+.. ..+. ..+..+++........... .....+...+. .
T Consensus 771 ~qlGl~l~~~~~~~~~-yd~~~G~~V--~~e~~---~~v~-------~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~ 837 (1713)
T PLN02976 771 AQLGLELTVLNSDCPL-YDVVTGEKV--PADLD---EALE-------AEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYA 837 (1713)
T ss_pred HhcCCccccccCCCce-eEccCCcCC--CHHHH---HHHH-------HHHHHHHHHHHHHHhhcccCccCCCHHHHHHHH
Confidence 8899876544322211 222333322 11111 1111 0111111111100000000 00000000000 0
Q ss_pred Hhhhh-cChhh-------------hhHH-hhhcc-ccHHHHHHHhcCCHHHHHHHhhhhhhh---hcCCCCCchHHHHHH
Q 008069 308 FGQFF-KRPLE-------------CLTL-AYYLP-QNAGNIARKYIKDPQLLSFIDAECFIV---STINALQTPMINASM 368 (579)
Q Consensus 308 ~~~~~-~~~~~-------------~~~~-~~~~~-~s~~~~l~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~ 368 (579)
+.... ..... .... ..++. .........-+.++..+.++....... .+..+.+.++.+...
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~q 917 (1713)
T PLN02976 838 LKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQ 917 (1713)
T ss_pred HhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhc
Confidence 00000 00000 0000 00000 000000011111121222221111111 012222222221110
Q ss_pred H-HhhhhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEe----------CCEEEEEEeCCCcEEEcCEEEE
Q 008069 369 V-LCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE----------QGKAVGVRLSDGREFYAKTIIS 437 (579)
Q Consensus 369 ~-~~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~----------~~~v~gV~~~dG~~i~Ad~VV~ 437 (579)
. ......+..+.+.||++.|+++|++.+ .|++|++|++|.+. +++|. |.+.+|+++.||+||+
T Consensus 918 d~~y~~fgG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVt-VtTsDGetftADaVIV 991 (1713)
T PLN02976 918 DDVYGGFGGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVK-VSTSNGSEFLGDAVLI 991 (1713)
T ss_pred ccccccCCCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEE-EEECCCCEEEeceEEE
Confidence 0 000112334568899999999998876 49999999999984 24454 7788998999999999
Q ss_pred CCChhHHHh-hccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCC
Q 008069 438 NATRWDTFG-KLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVL 516 (579)
Q Consensus 438 a~~~~~~~~-~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~ 516 (579)
|+|+..+-. .+...+.||......+..+.++. ..+|++.|++++|+.+....... |... ...+.+|...
T Consensus 992 TVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~-lnKV~LeFdrpFW~~d~d~FG~s----~edt-dlrG~~~~~w---- 1061 (1713)
T PLN02976 992 TVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGV-LNKVVLEFPEVFWDDSVDYFGAT----AEET-DLRGQCFMFW---- 1061 (1713)
T ss_pred eCCHHHhhhcccccCCcccHHHHHHHHhhcccc-ceEEEEEeCCccccCCCCccccc----cccC-CCCceEEEec----
Confidence 999876521 24444579988878888877655 45999999999987643322221 1110 0112223322
Q ss_pred CCCCCCCCeeEEEEEeccc-hhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCC
Q 008069 517 DSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPG 569 (579)
Q Consensus 517 dp~~aP~G~~~l~~~~~~~-~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~ 569 (579)
+...|.|..+|..++... ...|..+ ..+++.+.+++.|. ++|++
T Consensus 1062 -nlr~psG~pVLVafv~G~aAreiEsL-------SDEE~Ve~ALe~Lr-KlFG~ 1106 (1713)
T PLN02976 1062 -NVKKTVGAPVLIALVVGKAAIDGQSM-------SSSDHVNHALMVLR-KLFGE 1106 (1713)
T ss_pred -cCCCCCCCCEEEEEeccHhHHHHhhC-------CHHHHHHHHHHHHH-HHcCc
Confidence 122344666666665432 1223322 23577889999999 88874
No 42
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.76 E-value=1e-16 Score=157.94 Aligned_cols=282 Identities=18% Similarity=0.146 Sum_probs=162.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEe----eCCeeeccccccccCCCCCCChHHHHHHH
Q 008069 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE----RDGYTFDVGSSVMFGFSDKGNLNLITQAL 229 (579)
Q Consensus 154 ~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~----~~g~~~~~G~~~~~g~~~~~~~~~~~~~l 229 (579)
+....+|+|||+|++||+||+.|+++ ++|++||++.++||.++|.. ..|+.+|+|.+.+.+. ....+.+++
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~----tYpnl~~Lf 79 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER----TYPNLTRLF 79 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC----CcchHHHHH
Confidence 34568999999999999999999986 79999999999999999873 4678999999998853 334578999
Q ss_pred HHcCCceeEeeCCCeEEEEcCCC-ceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHH
Q 008069 230 AAVGCEMEVIPDPTTVHFHLPND-LSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLF 308 (579)
Q Consensus 230 ~~~g~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
+.+|++-. .....+.+.+.+| ..+.-......+..+ .+.. -. .+|+.....+...... ...
T Consensus 80 ~~iGv~t~--as~Msf~v~~d~gglEy~g~tgl~~L~aq-k~n~--l~---pRf~~mlaeiLrf~r~-----~~~----- 141 (447)
T COG2907 80 KTIGVDTK--ASFMSFSVSLDMGGLEYSGLTGLAGLLAQ-KRNL--LR---PRFPCMLAEILRFYRS-----DLA----- 141 (447)
T ss_pred HHcCCCCc--ccceeEEEEecCCceeeccCCCccchhhc-cccc--cc---hhHHHHHHHHHHHhhh-----hcc-----
Confidence 99997643 1122222232222 111111111111100 0000 00 1222222111110000 000
Q ss_pred hhhhcChhhhhHHhhhccccHHHHHHHhcCCHHHH-HHHhhhhhh-hh--cCCCCCchHHHHHHHHhhhh-------cCc
Q 008069 309 GQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFI-VS--TINALQTPMINASMVLCDRH-------FGG 377 (579)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-------~~g 377 (579)
+ ......-..++.+++++.--...++ +++...... ++ ..+....|+.+.. .+...+ ...
T Consensus 142 ------~---~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll~l~~rp~ 211 (447)
T COG2907 142 ------P---SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLLYLPKRPT 211 (447)
T ss_pred ------c---hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCceecCCCCc
Confidence 0 0011112345666666543333222 222221111 11 0111112222222 222221 123
Q ss_pred cceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCCCCChH
Q 008069 378 INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKE 457 (579)
Q Consensus 378 ~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~ 457 (579)
|....||+...++.|.+.+ +++|+++++|.+|.+-.+++. |...||++-++|.||.++.+..++ .||+++ .++
T Consensus 212 wrtV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~-l~~~~G~s~rFD~vViAth~dqAl-~mL~e~--sp~ 284 (447)
T COG2907 212 WRTVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDGVV-LVNADGESRRFDAVVIATHPDQAL-ALLDEP--SPE 284 (447)
T ss_pred eeEcccchHHHHHHHhccc---cceeecCCceeeeeeCCCceE-EecCCCCccccceeeeecChHHHH-HhcCCC--CHH
Confidence 4566899999999998777 578999999999998776655 445679888999999999999986 577652 445
Q ss_pred HHHHHHhhccCCCeEEEE
Q 008069 458 EENFQKLYVKAPSFLSIH 475 (579)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~ 475 (579)
+++.+..+.|+....++|
T Consensus 285 e~qll~a~~Ys~n~aVlh 302 (447)
T COG2907 285 ERQLLGALRYSANTAVLH 302 (447)
T ss_pred HHHHHHhhhhhhceeEEe
Confidence 667888888876654544
No 43
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.75 E-value=4e-17 Score=167.79 Aligned_cols=294 Identities=21% Similarity=0.229 Sum_probs=161.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-cEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcC-
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG- 233 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g- 233 (579)
...+|+|||||+|||+||.+|..+|. +|+|+|+.+++||+..|+...+-.+++|++|++|-.. +.+.++.++.|
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~g----NpVY~la~~~g~ 95 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEG----NPVYELAKEYGD 95 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCC----ChHHHHHHHhCc
Confidence 45699999999999999999998776 6999999999999999999877799999999998332 24677888777
Q ss_pred CceeEeeCCCeEEE--EcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 234 CEMEVIPDPTTVHF--HLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 234 ~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
...-....+..... ...+|..+ .+.+.+++. ++.... .......... ..
T Consensus 96 ~~~~~~tg~~~~~~~~~~~~g~~V-----~~~~~~~~~-----------~~~~~~---~~~~r~~~~~---~~------- 146 (498)
T KOG0685|consen 96 LKLLEVTGPAYVDNFHTRSNGEVV-----PEELLDELN-----------EITVTL---SDKLREAEIA---HD------- 146 (498)
T ss_pred cceeccCCccccceeEEEecCccC-----cHHHHHHHH-----------HHHHhh---hhhccccccc---Cc-------
Confidence 22211111111110 00111111 111221111 111100 0000000000 00
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhcCC---------HHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcC--ccce
Q 008069 312 FKRPLECLTLAYYLPQNAGNIARKYIKD---------PQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFG--GINY 380 (579)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~ 380 (579)
..++..++...+.+.++ .-++ ..+..++...+-..+.-+..+.+... .. -.....+ ....
T Consensus 147 ------~~SvG~~ln~~~~~~~~-~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~-~~-ey~~~~ge~~~~~ 217 (498)
T KOG0685|consen 147 ------EGSVGEYLNSEFWDELR-GPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRA-LL-EYTECPGEELLIW 217 (498)
T ss_pred ------cccHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhh-cc-ceeecCchhhhee
Confidence 00000111111111111 1111 11111122222111111111111110 00 0000111 2234
Q ss_pred eCCChHHHHHHHHHHHHHc----C--ceEEeCceeeEEEEeC-CEEEEEEeCCCcEEEcCEEEECCChhHHHh---hccC
Q 008069 381 PVGGVGGIAKSLAKGLADK----G--SEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDTFG---KLLK 450 (579)
Q Consensus 381 p~gG~~~l~~aL~~~l~~~----G--~~I~l~~~V~~I~~~~-~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~---~Ll~ 450 (579)
..-|..++.+-|.+.+.+. | .+++++++|.+|..++ +.++ |++.||+.+.||+||++++.-.+-. +|+
T Consensus 218 ~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF- 295 (498)
T KOG0685|consen 218 NKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVK-LRCSDGEVFHADHVIVTVSLGVLKEQHHKLF- 295 (498)
T ss_pred chhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEE-EEEeCCcEEeccEEEEEeechhhhhhhhhhc-
Confidence 4557777777776655432 2 3456679999999875 5555 9999999999999999998765422 243
Q ss_pred CCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceee
Q 008069 451 GEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVL 494 (579)
Q Consensus 451 ~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~ 494 (579)
.+.||..+.++++++..++.. +|||-+.+++||++...-.++.
T Consensus 296 ~P~LP~~K~~AIe~lgfGtv~-KiFLE~E~pfwp~~~~~i~~lw 338 (498)
T KOG0685|consen 296 VPPLPAEKQRAIERLGFGTVN-KIFLEFEEPFWPSDWNGIQLLW 338 (498)
T ss_pred CCCCCHHHHHHHHhccCCccc-eEEEEccCCCCCCCCceeEEEE
Confidence 347999999999998877654 9999999999998765444443
No 44
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.73 E-value=2.1e-18 Score=197.38 Aligned_cols=139 Identities=17% Similarity=0.055 Sum_probs=117.2
Q ss_pred CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCCCccccccccccccchhhh
Q 008069 57 SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTLRSEDLGCGESERNRDFAL 131 (579)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (579)
.+|..+.|+..||.|+.||.|+.+.. ++++.+|..+-..+|++| +||+ .||.+|.++.. -.++.|.
T Consensus 440 ~~c~~aPC~~~CP~~~dIp~yi~~i~------~g~~~~A~~vi~~~nPlp~icGrVC~h--~Ce~~C~R~~~-d~pV~I~ 510 (1012)
T TIGR03315 440 TDCYVAPCTTGCPINQDIPEYIRLVG------EKRYLEALEVIYDKNPLPAITGTICDH--QCQYKCTRLDY-DESVNIR 510 (1012)
T ss_pred ccCCCCccccCCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCChhhHhhCcCCc--chHHHhcCCCC-CCCCccc
Confidence 67999999999999999999999999 999999999999999999 9997 69999998754 4899999
Q ss_pred hccccccccceeecCCCc-CCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCee
Q 008069 132 MAKTVMSVDNLVEIGGNE-GMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT 205 (579)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~ 205 (579)
.+++++.+.+........ ........+||+|||||+|||+||+.|++.|++|+|||+.+.+||.+. +.++++.
T Consensus 511 ~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~-~~IP~~r 584 (1012)
T TIGR03315 511 EMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK-NIIPEFR 584 (1012)
T ss_pred HHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee-ecccccC
Confidence 999999887654322111 111123568999999999999999999999999999999999999875 3445543
No 45
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.72 E-value=3.3e-18 Score=194.86 Aligned_cols=160 Identities=16% Similarity=0.044 Sum_probs=128.7
Q ss_pred CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCCCccccccccccccchhhh
Q 008069 57 SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTLRSEDLGCGESERNRDFAL 131 (579)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (579)
.+|..+.|+..||.|++||.|+.+.. ++++.+|..+-..+|++| +||+ .||.+|+++.. -.++.|.
T Consensus 442 ~~c~~aPC~~~CP~~~dIp~yi~li~------~g~~~~A~~~I~~~nPlP~icGrVCph--~Ce~~C~R~~~-d~pV~I~ 512 (1019)
T PRK09853 442 TDCYVAPCVTACPINQDIPEYIRLVG------EGRYAEALELIYQRNALPAITGHICDH--QCQYNCTRLDY-DEAVNIR 512 (1019)
T ss_pred cCCCCCccccCCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCChhhHhhCcCCc--hhHHHhcCCCC-CCCeecc
Confidence 77999999999999999999999999 999999999999999999 9998 69999998854 4799999
Q ss_pred hccccccccceeecCCCcCCC-CCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeecccc
Q 008069 132 MAKTVMSVDNLVEIGGNEGMS-RGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGS 210 (579)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~ 210 (579)
.+++++.+.++.........+ .....++|+|||||++|++||+.|+++|++|+|+|+.+.+||.+. +.++++++.
T Consensus 513 ~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr-~~IP~~Rlp--- 588 (1019)
T PRK09853 513 ELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK-NIIPQFRIP--- 588 (1019)
T ss_pred HHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee-eeccccccc---
Confidence 999999887654322111111 124568999999999999999999999999999999999999876 456665432
Q ss_pred ccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 211 SVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 211 ~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
........+.+..+|+++.
T Consensus 589 --------~evL~~die~l~~~GVe~~ 607 (1019)
T PRK09853 589 --------AELIQHDIEFVKAHGVKFE 607 (1019)
T ss_pred --------HHHHHHHHHHHHHcCCEEE
Confidence 1122334466777787654
No 46
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.70 E-value=5e-15 Score=150.03 Aligned_cols=362 Identities=15% Similarity=0.122 Sum_probs=218.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCc--EEEEecCCCCCcceeE-EeeCCeeeccccccccCCCCCCChHHHHHHHHH
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGAR--VLVLEKYVIPGGSSGY-YERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~--v~~~e~~~~~gg~~~t-~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~ 231 (579)
...++|+|+|||++||++|++|++.+-+ |+|+|+.+++||...+ ....|+.||.|+..+-...+.+ .....++.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g--~~~l~lv~d 86 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGG--AETLDLVSD 86 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcch--hHHHHHHHH
Confidence 3468999999999999999999999876 5669999999999998 5568999999999997655433 246789999
Q ss_pred cCCceeEeeCC-----CeEEEEcCCCceEEecCCHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhhhhhhhccchhh
Q 008069 232 VGCEMEVIPDP-----TTVHFHLPNDLSVRVHREYSDFVAELTSKF-PHEKEGVLAFYGECWKIFNALNSLELKSLEEPI 305 (579)
Q Consensus 232 ~g~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~-p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
+|++-++.+-. ...++.+..|....++...... +.... |.-+.-+..
T Consensus 87 LGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s---~~~~l~p~~k~L~~a------------------------ 139 (491)
T KOG1276|consen 87 LGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGS---LKFSLQPFGKPLLEA------------------------ 139 (491)
T ss_pred cCccceeeecCCCChhhhheeeccCcccccCCcccccc---cccccCcccchhHHH------------------------
Confidence 99976555421 1123333444444444332210 00000 000000000
Q ss_pred HHHhhhhcChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhh-------------
Q 008069 306 YLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCD------------- 372 (579)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 372 (579)
+++..++... -.....+|+.++++|.|.++....+++..+...++.++...++....-.+..
T Consensus 140 -~l~e~fr~~~----~~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i 214 (491)
T KOG1276|consen 140 -FLRELFRKKV----SDPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTI 214 (491)
T ss_pred -HHhhhccccC----CCCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHH
Confidence 1111111100 0112356889999999998888888998888888888877776532211100
Q ss_pred -h--------------------hcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeC-CEE-EEEEeCCCcE
Q 008069 373 -R--------------------HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKA-VGVRLSDGRE 429 (579)
Q Consensus 373 -~--------------------~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~v-~gV~~~dG~~ 429 (579)
. ...+.+..+||.+.+.+++.+.|.+..+.|.+..++..+.... +++ ...+..+++.
T Consensus 215 ~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~ 294 (491)
T KOG1276|consen 215 RAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQ 294 (491)
T ss_pred HHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCce
Confidence 0 0012345689999999999999999988899999999887643 322 2334445542
Q ss_pred -EEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceE
Q 008069 430 -FYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSI 508 (579)
Q Consensus 430 -i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i 508 (579)
...+.++.+.++... .+|++. +.....+.+..+. .++..+|++-+.++....++....++++..- ..+...+
T Consensus 295 ~~~~~~~~~t~~~~k~-a~ll~~--~~~sls~~L~ei~-y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~---~~~~~~L 367 (491)
T KOG1276|consen 295 RVVVSYDAATLPAVKL-AKLLRG--LQNSLSNALSEIP-YVPVAVVNTYYPKEKIDLPLQGFGLLVPSEP---KNGFKTL 367 (491)
T ss_pred eeeccccccccchHHh-hhhccc--cchhhhhhhhcCC-CCceEEEEEeccCcccccccccceeeccCCC---CCCCcee
Confidence 445555567776554 577775 3334445555554 4556788888877532223333344444211 1233333
Q ss_pred EEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCChhhHHHHHHHHHHHHHHHHH
Q 008069 509 FLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLE 563 (579)
Q Consensus 509 ~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~~~y~~~ke~~~~~il~~le 563 (579)
-+-+.|..-|.++|.+++++++.... ..+|..... ..|++.+.+.+.|.
T Consensus 368 G~ifdS~~Fp~~~~s~~vtvm~gg~~-~~n~~~~~~-----S~ee~~~~v~~alq 416 (491)
T KOG1276|consen 368 GTIFDSMLFPDRSPSPKVTVMMGGGG-STNTSLAVP-----SPEELVNAVTSALQ 416 (491)
T ss_pred EEEeecccCCCCCCCceEEEEecccc-cccCcCCCC-----CHHHHHHHHHHHHH
Confidence 33344666677788777777766543 235543311 22455666666665
No 47
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.5e-15 Score=159.36 Aligned_cols=373 Identities=14% Similarity=0.127 Sum_probs=207.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEee-CCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
++|+|+|||+|||+||+.|+.+|++|+|+|+++++||.+.++.. +|...|.|.|.|+++ ...+.+++++++.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~-----Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGC-----YYNLLTLLKELPIED 75 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechh-----HHHHHHHhhhCCchh
Confidence 47999999999999999999999999999999999999999884 789999999999874 456888999999887
Q ss_pred eEeeCCCeEEE-EcCC--Cce--EEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 008069 237 EVIPDPTTVHF-HLPN--DLS--VRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (579)
Q Consensus 237 ~~~~~~~~~~~-~~~~--g~~--~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
..........+ ...+ |.. +..+.. |.....+..|+.......... ..+.-.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------p~p~~~~~~~l~~~~~~~~~~-----------~~~~~~l 132 (485)
T COG3349 76 RLQLREHTKTFVGSGTRPGAIGRFARPDA------------PQPTNGLKAFLRLPQLPRREK-----------IRFVLRL 132 (485)
T ss_pred eeehHhhhhhhcccCCCCCcccccccCCC------------CCcchhhhhhhhccccCHHHH-----------hHHhhcc
Confidence 65554433332 1111 110 111100 111111111111100000000 0000000
Q ss_pred hcCh-hhhhHHhhhccccHHHHHHHhcCCH-HHHHHHhhhhhhhhcCCCCCchHHHHH-----HHHhhhhcCccceeCCC
Q 008069 312 FKRP-LECLTLAYYLPQNAGNIARKYIKDP-QLLSFIDAECFIVSTINALQTPMINAS-----MVLCDRHFGGINYPVGG 384 (579)
Q Consensus 312 ~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~p~gG 384 (579)
...+ .....+.++...+..+|+++.-..+ ..+..+...........+...++.... +.+......-....+|+
T Consensus 133 ~~~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~ 212 (485)
T COG3349 133 GDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGS 212 (485)
T ss_pred ccccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCC
Confidence 0000 1233455566788999999865443 445666666555556667776652211 11111011223445566
Q ss_pred h-HHHHHHHHHHHHHcCceEEeCceeeEEEEeC----CEEEEEEeCCCcE---EEcCEEEECCChhHHHhhccCCCCCCh
Q 008069 385 V-GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRLSDGRE---FYAKTIISNATRWDTFGKLLKGEQLPK 456 (579)
Q Consensus 385 ~-~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~----~~v~gV~~~dG~~---i~Ad~VV~a~~~~~~~~~Ll~~~~lp~ 456 (579)
. ..+...+.+.+++.|.+++.+.+|++|..+. .+++|+... +.+ +.++.|+.+.+... +...++.++.+.
T Consensus 213 ~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~-~~~~~ps~W~~~ 290 (485)
T COG3349 213 PDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQR-FKRDLPSEWPKW 290 (485)
T ss_pred CcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccch-HhhcCccccccc
Confidence 4 5667888999999999999999999998754 356777765 443 44566666555443 345555544322
Q ss_pred HHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccc-hhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccc
Q 008069 457 EEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDD-WNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS 535 (579)
Q Consensus 457 ~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~ 535 (579)
.....+..+ +.....++++.++...++....-+...+... |. ..+.+..+.-.++..+ ..+.+|+...--++..+
T Consensus 291 ~~f~~ly~l-~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s--~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~~ 366 (485)
T COG3349 291 SNFDGLYGL-RLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWS--DDTLGGVVADLALTSP-DYVEPGAGCYLEKVLAP 366 (485)
T ss_pred ccccccccc-cccceeEEEEeecCccccccccchhhhhhccccc--cccCCceeeeccccch-hhccccchhhhhhhhcc
Confidence 221112222 2345678999998765443321122121110 11 1222222233333222 44555553222222222
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 008069 536 IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQ 572 (579)
Q Consensus 536 ~~~w~~~~~~~y~~~ke~~~~~il~~le~~~~P~l~~ 572 (579)
..+|.. +..+++.....++++ .++|.+.+
T Consensus 367 ~~~~~~-------~~~~~~~a~~e~~~~-~~vP~~~~ 395 (485)
T COG3349 367 GWPFLF-------ESDEAIVATFEKELY-ELVPSLAE 395 (485)
T ss_pred cccccc-------cchhhHHHHHHHHhh-hcCCchhc
Confidence 223321 244677888888888 78887643
No 48
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.66 E-value=4e-17 Score=181.28 Aligned_cols=158 Identities=15% Similarity=0.060 Sum_probs=129.5
Q ss_pred CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCCCccccccccccccchhhh
Q 008069 57 SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTLRSEDLGCGESERNRDFAL 131 (579)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (579)
.+|..|.|++.||.|+.||.|+++.. ++++.+|..+...+|++| +||. .||++|.++.. -.+++|.
T Consensus 42 ~~~~~~~C~~~CP~~~~i~~~~~~~~------~g~~~~a~~~~~~~np~~~~~grvc~~--~ce~~C~r~~~-~~~v~i~ 112 (564)
T PRK12771 42 YVDQTPPCNAACPAGEDIRGWLALVR------GGDYEYAWRRLTKDNPFPAVMGRVCYH--PCESGCNRGQV-DDAVGIN 112 (564)
T ss_pred ccCCCCccccCCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCCcchHhhCcCCc--hhHHhccCCCC-CCCcCHH
Confidence 47899999999999999999999999 999999999999999999 9998 69999998844 4799999
Q ss_pred hccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccc
Q 008069 132 MAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSS 211 (579)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~ 211 (579)
.+++++.+.....++.... .......+|+|||+|++||++|..|++.|++|+|+|+.+.+||... +.+++|.+.
T Consensus 113 ~l~r~~~~~~~~~~~~~~~-~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~-~gip~~~~~---- 186 (564)
T PRK12771 113 AVERFLGDYAIANGWKFPA-PAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR-YGIPAYRLP---- 186 (564)
T ss_pred HHHHHHHHHHHHcCCCCCC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee-ecCCCccCC----
Confidence 9999988877766665442 2234568999999999999999999999999999999999999765 556665443
Q ss_pred cccCCCCCCChHHHHHHHHHcCCce
Q 008069 212 VMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 212 ~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
........+.+.++|+++
T Consensus 187 -------~~~~~~~l~~~~~~Gv~~ 204 (564)
T PRK12771 187 -------REVLDAEIQRILDLGVEV 204 (564)
T ss_pred -------HHHHHHHHHHHHHCCCEE
Confidence 112223345666777654
No 49
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.65 E-value=7.4e-17 Score=181.40 Aligned_cols=140 Identities=14% Similarity=0.058 Sum_probs=115.2
Q ss_pred CCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCCCccccccccccccc
Q 008069 54 GSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTLRSEDLGCGESERNR 127 (579)
Q Consensus 54 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 127 (579)
+.+ .+|. +.|+..||.|++||.|+++.. +++|.+|..+...+|++| +||+ .||..|..+. ...+
T Consensus 94 ~~~c~~C~-~pC~~~CP~~~~~~~~~~~~~------~g~~~~a~~~~~~~~p~p~~~grvC~~--~Ce~~C~r~~-~~~~ 163 (652)
T PRK12814 94 EQHCGDCL-GPCELACPAGCNIPGFIAAIA------RGDDREAIRIIKETIPLPGILGRICPA--PCEEACRRHG-VDEP 163 (652)
T ss_pred hhcccccC-CccccCCCCCCcHHHHHHHHH------CCCHHHHHHHHHhhCCccceeeCCcCc--hhhHHHcCCC-CCCC
Confidence 345 8897 459999999999999999999 999999999999999999 9999 6999998763 3468
Q ss_pred hhhhhccccccccceeecCCCcCCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCe
Q 008069 128 DFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGY 204 (579)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~ 204 (579)
++|..+++++.+......+...........++|+|||||++||++|..|++.|++|+|+|+.+.+||... +..+++
T Consensus 164 v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~-~gip~~ 239 (652)
T PRK12814 164 VSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR-YGIPRF 239 (652)
T ss_pred cchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee-ecCCCC
Confidence 8999999998876554333211122234568999999999999999999999999999999999999865 444443
No 50
>PRK13984 putative oxidoreductase; Provisional
Probab=99.64 E-value=9.1e-17 Score=180.10 Aligned_cols=149 Identities=21% Similarity=0.165 Sum_probs=124.7
Q ss_pred hhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCCCc
Q 008069 42 VQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTLRS 115 (579)
Q Consensus 42 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 115 (579)
..+|+.++++++++| ++||. |+..||.+++||.|+++.. ++++.++......+|++| +||+ .||
T Consensus 172 ~~g~~~~~~~~~~~~C~~Cg~--C~~~CP~~~~i~~~~~~i~------~~~~~~a~~~~~~~np~~~~~g~vC~~--~Ce 241 (604)
T PRK13984 172 VKGYSKEQAMQEAARCVECGI--CTDTCPAHMDIPQYIKAIY------KDDLEEGLRWLYKTNPLSMVCGRVCTH--KCE 241 (604)
T ss_pred ccCCCHHHHHHhhhhhcCCCc--ccccCCCCCCHHHHHHHHH------cCCHHHHHHHHHhcCCccchhhCcCCc--hHH
Confidence 344678889999999 99995 9999999999999999999 999999999999999997 9997 699
Q ss_pred cccccccccccchhhhhccccccccceeecCCCcC-CCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCc
Q 008069 116 EDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEG-MSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (579)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (579)
++|.++. ...++.|..+++++.+......+.... .......++|+|||+|++|+++|..|++.|++|+|||+.+.+||
T Consensus 242 ~~C~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG 320 (604)
T PRK13984 242 TVCSIGH-RGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320 (604)
T ss_pred HhhcccC-CCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 9999884 347899999999998876544442211 11234568999999999999999999999999999999999999
Q ss_pred ceeEEeeC
Q 008069 195 SSGYYERD 202 (579)
Q Consensus 195 ~~~t~~~~ 202 (579)
... +..+
T Consensus 321 ~~~-~~i~ 327 (604)
T PRK13984 321 VMR-YGIP 327 (604)
T ss_pred eEe-ecCC
Confidence 765 4333
No 51
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.57 E-value=3.9e-13 Score=145.15 Aligned_cols=71 Identities=28% Similarity=0.467 Sum_probs=58.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHc----CCcEEEEecCCCCCcceeEEe--eCCeeeccccccccCCCCCCChHHHHHHH
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQAL 229 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~~~G~~~~~g~~~~~~~~~~~~~l 229 (579)
...+|+|||||++||+||.+|++. |++|+|||+.+.+||++.++. ..||.++.|.+.. .....+.+++
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~------~~y~~l~~ll 94 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREME------NHFECLWDLF 94 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCcc------chHHHHHHHH
Confidence 357999999999999999999995 689999999999999998755 6799998887642 2445677777
Q ss_pred HHc
Q 008069 230 AAV 232 (579)
Q Consensus 230 ~~~ 232 (579)
+.+
T Consensus 95 ~~i 97 (576)
T PRK13977 95 RSI 97 (576)
T ss_pred Hhc
Confidence 766
No 52
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.56 E-value=3.5e-14 Score=135.99 Aligned_cols=254 Identities=22% Similarity=0.236 Sum_probs=156.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHH---HcCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALA---AVGC 234 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~---~~g~ 234 (579)
.+|+|||+|++|++||+.|+.+|++|+||||..-+||+..|.+.+|-.||.|+.+|... -..+.+.++ +-|+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~-----~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPR-----DELFLRAVEALRDDGL 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCC-----chHHHHHHHHHHhCCc
Confidence 46999999999999999999999999999999999999999999998999998887421 111111111 1111
Q ss_pred ceeEeeCCCeEEEEcCCCceEEecCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 008069 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (579)
- .. +. ..
T Consensus 77 V--------------------~~-------------------------W~------------------~~---------- 83 (331)
T COG3380 77 V--------------------DV-------------------------WT------------------PA---------- 83 (331)
T ss_pred e--------------------ee-------------------------cc------------------cc----------
Confidence 0 00 00 00
Q ss_pred hhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcCccceeCCChHHHHHHHHH
Q 008069 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAK 394 (579)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~gG~~~l~~aL~~ 394 (579)
+-.+..+ +..+. ....-|.-.-||..|++.|+.
T Consensus 84 ------------------~~~~~~~---------------~~~~~--------------~d~~pyvg~pgmsalak~LAt 116 (331)
T COG3380 84 ------------------VWTFTGD---------------GSPPR--------------GDEDPYVGEPGMSALAKFLAT 116 (331)
T ss_pred ------------------ccccccC---------------CCCCC--------------CCCCccccCcchHHHHHHHhc
Confidence 0000000 00000 000113345678888888877
Q ss_pred HHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCc-EEEcCEEEECCChhHHHhhccCC--CCCChHHHHHHHhhccCCCe
Q 008069 395 GLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-EFYAKTIISNATRWDTFGKLLKG--EQLPKEEENFQKLYVKAPSF 471 (579)
Q Consensus 395 ~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~-~i~Ad~VV~a~~~~~~~~~Ll~~--~~lp~~~~~~~~~~~~~~s~ 471 (579)
.| +|+++++|++|...++.++ +.+++|. ...+|.||+|.+++.+. .||.. ..+|+..+..+....|.+ +
T Consensus 117 dL-----~V~~~~rVt~v~~~~~~W~-l~~~~g~~~~~~d~vvla~PAPQ~~-~LLt~~~~~~p~~l~~~~a~V~y~P-c 188 (331)
T COG3380 117 DL-----TVVLETRVTEVARTDNDWT-LHTDDGTRHTQFDDVVLAIPAPQTA-TLLTTDADDLPAALRAALADVVYAP-C 188 (331)
T ss_pred cc-----hhhhhhhhhhheecCCeeE-EEecCCCcccccceEEEecCCCcch-hhcCcccccchHHHHHhhccceehh-H
Confidence 77 7999999999999877766 8886664 67899999999999885 45533 457877777777767665 3
Q ss_pred EEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCCeeEEEEEeccchhhhcCCChhhHHHHH
Q 008069 472 LSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKK 551 (579)
Q Consensus 472 ~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G~~~l~~~~~~~~~~w~~~~~~~y~~~k 551 (579)
+.+-+++..+..-| ..+.++++ .|..++-. ++.-|.+.|.|.. +.+-. . .+|. .+.++..+
T Consensus 189 ~s~~lg~~q~l~~P---~~G~~vdg------~~laWla~---d~sK~g~~p~~~~-~vvqa--s-p~wS---r~h~~~~~ 249 (331)
T COG3380 189 WSAVLGYPQPLDRP---WPGNFVDG------HPLAWLAR---DASKKGHVPDGEI-WVVQA--S-PDWS---REHLDHPA 249 (331)
T ss_pred HHHHhcCCccCCCC---CCCcccCC------Ceeeeeec---cccCCCCCCcCce-EEEEe--C-chHH---HHhhcCCH
Confidence 35567776544212 12222222 23333322 3345778888773 22221 1 2453 44555566
Q ss_pred HHHHHHHHHHHH
Q 008069 552 ELVADEIINRLE 563 (579)
Q Consensus 552 e~~~~~il~~le 563 (579)
|+.++.+-....
T Consensus 250 e~~i~~l~aA~~ 261 (331)
T COG3380 250 EQVIVALRAAAQ 261 (331)
T ss_pred HHHHHHHHHhhh
Confidence 666655544444
No 53
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.54 E-value=2.4e-15 Score=169.39 Aligned_cols=123 Identities=11% Similarity=-0.022 Sum_probs=101.7
Q ss_pred cccccccccccccccccccccccccccCCccccccccccCCCCCCC------CCCCCCCCccccccccccccchhhhhcc
Q 008069 61 IRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS------NFNGSTLRSEDLGCGESERNRDFALMAK 134 (579)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (579)
.+.|...||+|++||.|+.+.. ++.+.+|..+...+|++| +|| .||++|.++. -.++.|..+|
T Consensus 277 l~~c~~~CPa~~~Ip~~~~~~~------~g~~~~Al~ii~~~NP~p~~~G~RVCp---~CE~aC~r~~--dePV~I~~le 345 (1028)
T PRK06567 277 MTDLKQGCPLKQKISEMNYVKA------QGFNLSALAIIVIDNPMVAATGHRICN---DCSKACIYQK--QDPVNIPLIE 345 (1028)
T ss_pred CCccccCCCCCCcchHHHHHHH------CCCHHHHHHHHHHhCCChHhhCCccCc---chHHHhcCCC--CCCeehhHHH
Confidence 3689999999999999999999 999999999999999998 788 3999999882 4799999999
Q ss_pred ccccccce-----------eecCCCc----CCCCCCCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCc
Q 008069 135 TVMSVDNL-----------VEIGGNE----GMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (579)
Q Consensus 135 ~~~~~~~~-----------~~~~~~~----~~~~~~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (579)
+++.+..+ ..+|.+. ..+.....++|+|||||+|||+||++|++.|++|+|+|+.+..|+
T Consensus 346 r~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 346 SNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred HHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 99987522 1134221 112334678999999999999999999999999999999765443
No 54
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=4.5e-13 Score=136.18 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=57.0
Q ss_pred CccceeC-CChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCCh
Q 008069 376 GGINYPV-GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (579)
Q Consensus 376 ~g~~~p~-gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~ 441 (579)
.|-.+|+ ...+.++++|.+++++.||+|+++++|.+|..++... .|.+.+|++++||.+|+|+|-
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f-~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF-RLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE-EEEcCCCCEEEccEEEEecCC
Confidence 3556777 7789999999999999999999999999999887444 488899988999999999994
No 55
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.50 E-value=5e-14 Score=147.07 Aligned_cols=68 Identities=32% Similarity=0.576 Sum_probs=59.6
Q ss_pred CccceeCCC---hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG---~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.+++.+.+| ...++++|.+.+++.|++|+.+++|++|..+++++.+|++.+|+ ++||.||+|+|++..
T Consensus 134 ~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 134 GGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce
Confidence 466777888 68999999999999999999999999999999999999999997 999999999999874
No 56
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.43 E-value=1.8e-12 Score=137.09 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=51.0
Q ss_pred CccceeCC-ChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 376 GGINYPVG-GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 376 ~g~~~p~g-G~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+..||.. -..++.+.|.+.+++.|++|+++++|++|..+++++..|++++++++.||.||+|+|...
T Consensus 98 ~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 98 DGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp TTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred CCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 35566765 467899999999999999999999999999999998889987777899999999999643
No 57
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.37 E-value=1.6e-12 Score=101.81 Aligned_cols=67 Identities=39% Similarity=0.562 Sum_probs=56.7
Q ss_pred EECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHH
Q 008069 162 VIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (579)
Q Consensus 162 viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~ 231 (579)
|||||++||++|+.|+++|++|+|+||++.+||++.++..+|+.+|.|++.+....+ ...+.+++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~---~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDD---YPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTS---CHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCC---chHHHHHHcC
Confidence 899999999999999999999999999999999999999999999999999976422 2345666654
No 58
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.35 E-value=2.1e-11 Score=127.91 Aligned_cols=75 Identities=23% Similarity=0.371 Sum_probs=61.6
Q ss_pred CccceeCCC---hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcE-EEcCEEEECCChhHH-HhhccC
Q 008069 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE-FYAKTIISNATRWDT-FGKLLK 450 (579)
Q Consensus 376 ~g~~~p~gG---~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~-i~Ad~VV~a~~~~~~-~~~Ll~ 450 (579)
++.+.|.+| ...++.+|++.++++|+++++|++|+.|+..+++++.+.+.+|++ ++|+.||.++|.... +.++.+
T Consensus 140 aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 140 AALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred eeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 455667666 378899999999999999999999999999887666688888877 999999999998764 334443
No 59
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.35 E-value=6.1e-11 Score=125.33 Aligned_cols=324 Identities=17% Similarity=0.261 Sum_probs=173.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeC---------------------Ceeeccccccc
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD---------------------GYTFDVGSSVM 213 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~---------------------g~~~~~G~~~~ 213 (579)
+.+|||+|+|.|..-.-.|..|++.|.+|+.+|+++.-||...++... .|.+|+-+..+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 457999999999999999999999999999999999999998887621 35666666666
Q ss_pred cCCCCCCChHHHHHHHHHcCCc--eeEeeCCCeEEEEcCCCceEEecCCHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHH
Q 008069 214 FGFSDKGNLNLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHREYSDFVA-ELTSKFPHEKEGVLAFYGECWKIF 290 (579)
Q Consensus 214 ~g~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~l~~~~p~~~~~i~~f~~~~~~~~ 290 (579)
+. ...+.++|-+.++. +++..... .+.+.++....+|....+... .+. ...++..+.+|+..+...
T Consensus 82 ~a------~g~LV~lLi~S~V~rYLEFk~V~~--~~v~~~~~l~kVP~sr~dvf~s~~l--sl~eKR~lmkFl~~v~~~- 150 (438)
T PF00996_consen 82 YA------RGPLVKLLISSGVTRYLEFKAVDG--SYVYKNGKLHKVPCSREDVFKSKLL--SLFEKRRLMKFLKFVANY- 150 (438)
T ss_dssp ET------TSHHHHHHHHCTGGGGSEEEEESE--EEEEETTEEEE--SSHHHHHC-TTS---HHHHHHHHHHHHHHHHG-
T ss_pred hc------cCHHHHHHHhCCcccceEEEEcce--eEEEeCCEEeeCCCCHHHhhcCCCc--cHHHHHHHHHHHHHHhhc-
Confidence 53 23477888887753 22222222 233346777777776554322 111 011345555665544211
Q ss_pred HHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH
Q 008069 291 NALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL 370 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 370 (579)
.... + ......+....++.+++.++--++.+..++....-+.........|+..+....
T Consensus 151 ------~~~~---~------------~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri 209 (438)
T PF00996_consen 151 ------EEDD---P------------STHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERI 209 (438)
T ss_dssp ------CTTB---G------------GGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHH
T ss_pred ------ccCC---c------------chhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHH
Confidence 0000 0 000001123467888888888888888877532211111111112322222111
Q ss_pred h------hhh-cCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 371 C------DRH-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 371 ~------~~~-~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
. .++ .....||..|.++|++++.|...=.|+...+|++|.+|.++ ++++.+|.. +|++++|+.||. ++.
T Consensus 210 ~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~--dps 286 (438)
T PF00996_consen 210 KLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG--DPS 286 (438)
T ss_dssp HHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE--EGG
T ss_pred HHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE--CCc
Confidence 1 111 23567999999999999999999999999999999999984 578888875 888999999995 332
Q ss_pred HHHhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCC-CCCccceeeccchhhhcCCcceEEEEcCCCCCCCCC
Q 008069 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPP-DTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA 521 (579)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~a 521 (579)
. +++ . .+........-+.++.+.... +.....++++.. ...+. ..||+...+ .+...+
T Consensus 287 y-----~p~-----~-------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~--~~~~~-~dIyv~~~s-s~~~~C 345 (438)
T PF00996_consen 287 Y-----LPE-----K-------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQS--QVGRK-SDIYVLQLS-SSTGVC 345 (438)
T ss_dssp G-----BGC-----G-------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GG--GCTSS-S-EEEEEEE-GGGTSS
T ss_pred c-----Ccc-----c-------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCc--ccCCC-CCeEEEEEC-CCcccc
Confidence 2 211 1 011112233334456554221 111234555432 11111 236664433 234568
Q ss_pred CCCeeEEEEEecc
Q 008069 522 PEGHHILHIFTIC 534 (579)
Q Consensus 522 P~G~~~l~~~~~~ 534 (579)
|+|+-++++++..
T Consensus 346 P~G~yi~~~St~~ 358 (438)
T PF00996_consen 346 PKGQYIAYVSTTV 358 (438)
T ss_dssp -TT-EEEEEEEEE
T ss_pred CCCcEEEEEEecc
Confidence 9999999998864
No 60
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=99.35 E-value=4.2e-15 Score=127.04 Aligned_cols=99 Identities=7% Similarity=-0.008 Sum_probs=74.4
Q ss_pred hhhhccccccccccCCC-CCcccccccccccccccccccccccccccccCCccccccccccCCCCCCC-----CCCCCCC
Q 008069 40 NKVQSFGQRDAMQLGSS-SKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYEKSSLFSGDSLKSS-----NFNGSTL 113 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 113 (579)
|-...|+..+++++|+| ++|..|.|+..||+|++||.|+.+.. ++++.+|..+...+|++| +||+..+
T Consensus 7 e~~~~~~~~~~~~ea~rC~~c~~~pC~~aCP~~~dip~~i~~i~------~g~~~~A~~~i~~~np~p~vcGrvCp~p~~ 80 (111)
T PF14691_consen 7 EVEKGYSEEEAIEEASRCLQCEDPPCQAACPAHIDIPEYIRLIR------EGNFKEAYELIREDNPFPAVCGRVCPHPKQ 80 (111)
T ss_dssp ---SS--HCCHHHHHHHS---TT-HHHHTSTT---HHHHHHHHH------CT-HHHHHHHHHHH-TTHHHHHHH--GGGS
T ss_pred HHhcCcCHHHHHHHHhhccCCCCCCcccCCCCCCcHHHHHHHHH------CCCHHHHHHHHHHhCCCcccccCCCCCcch
Confidence 44578999999999999 99999999999999999999999999 999999999999999999 8999999
Q ss_pred CccccccccccccchhhhhccccccccceeecC
Q 008069 114 RSEDLGCGESERNRDFALMAKTVMSVDNLVEIG 146 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (579)
||.+|+++ .. +++.|..+++++++.+.+++|
T Consensus 81 Ce~~C~r~-~~-~pV~I~~l~r~~~d~~~~~~~ 111 (111)
T PF14691_consen 81 CESACRRG-KG-EPVAIRALERFIADYALEEGW 111 (111)
T ss_dssp GGGG-GGG-ST--S--HHHHHHHHHHHHHHHT-
T ss_pred HHHHccCC-CC-CCCcHHHHHHHHHHHHHHcCC
Confidence 99999999 55 999999999999999887776
No 61
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.31 E-value=9.7e-11 Score=125.63 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=57.5
Q ss_pred CccceeCCC---hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG---~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
+++++|.+| ...++.+|.+.+++.|++|+++++|++|..+++++.+|++.+| ++.||.||+|+|+|..
T Consensus 188 ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 188 GGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred eEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 456677665 3588899999999999999999999999988888877877665 6999999999999864
No 62
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.30 E-value=4.8e-11 Score=127.73 Aligned_cols=68 Identities=31% Similarity=0.513 Sum_probs=57.1
Q ss_pred CccceeCCCh--HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCc-----EEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV--GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-----EFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~--~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~-----~i~Ad~VV~a~~~~~~ 444 (579)
++..|+++-. .+|+...++.+.++|++++..++|+++..+++ ++||++.|.+ +++|+.||.|+|||..
T Consensus 152 ga~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 152 GAFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred ceEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 3555665543 58888999999999999999999999999988 9999986643 4899999999999974
No 63
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.28 E-value=1.1e-10 Score=124.17 Aligned_cols=66 Identities=30% Similarity=0.415 Sum_probs=55.7
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
++++.+.+|. ..+.++|.+.+++.|++++++++|++|..+++++ .|.+.+| ++.+|.||+|+|.|.
T Consensus 136 ~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 136 GAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred ceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeE-EEEECCC-EEEeCEEEECCCcch
Confidence 3556666663 7899999999999999999999999998877765 4777777 699999999999986
No 64
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=9.7e-11 Score=124.03 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=53.8
Q ss_pred ccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 377 g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+++.+.+|. ..+...|.+.+++.|++++.+++|++|..+++++. |++++| ++.+|.||+|+|.|.
T Consensus 133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~-v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVT-VKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEE-EEeCCC-EEEeCEEEEecCcch
Confidence 455566663 57888999999999999999999999998777765 777666 699999999999885
No 65
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.27 E-value=8.9e-11 Score=109.70 Aligned_cols=42 Identities=36% Similarity=0.506 Sum_probs=39.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
...||+|||||++||+||++|+++|.+|+||||+-.+||-..
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 358999999999999999999999999999999999998754
No 66
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.26 E-value=4.5e-11 Score=132.20 Aligned_cols=69 Identities=26% Similarity=0.415 Sum_probs=56.0
Q ss_pred CccceeCCC--hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CC--cEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG--VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG--~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG--~~i~Ad~VV~a~~~~~~ 444 (579)
+++++|.|- ..+++.++++.++++|++++++++|++|..+++++++|++. +| .+++||.||+|+|+|..
T Consensus 137 ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 137 GAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 455666432 25788899999999999999999999999988888888763 23 36999999999999974
No 67
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.25 E-value=5.3e-11 Score=127.48 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=53.8
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC-----cEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG-----~~i~Ad~VV~a~~~~~~ 444 (579)
++++++.+|. ..+...|.+.+++.|++|+.+++|++|..+++.++ |.+.++ .+++||.||+|+|+|..
T Consensus 184 ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 184 GGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred eEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChH
Confidence 4666776553 57788999999999999999999999998777765 433322 36999999999999864
No 68
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.24 E-value=7.3e-11 Score=128.04 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=56.1
Q ss_pred CccceeCCC----hHHHHHHHHHHHHH----cC--ceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG----VGGIAKSLAKGLAD----KG--SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG----~~~l~~aL~~~l~~----~G--~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
++.+.|.+| ...++.+|++.+++ .| ++|+++++|++|..++++++.|++.+| +++||.||+|+|+|..
T Consensus 197 ~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 197 AALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 455667553 26899999999999 78 779999999999988666666888877 5999999999999974
No 69
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.23 E-value=1.4e-10 Score=131.58 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=58.3
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
+++++|.+|. ..++.+|.+.+++ |++++.+++|++|..+++++. |.+.+|..+++|.||+|+|.+..
T Consensus 395 ~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 395 GGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 5777888874 6899999999998 999999999999998888776 88888877889999999999863
No 70
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.23 E-value=1.7e-10 Score=115.05 Aligned_cols=61 Identities=23% Similarity=0.245 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCC-EEEEEEeCC-----------CcEEEcCEEEECCChhHHHh
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRLSD-----------GREFYAKTIISNATRWDTFG 446 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~-~v~gV~~~d-----------G~~i~Ad~VV~a~~~~~~~~ 446 (579)
..+...|.+.+++.|++|++++.|++|..+++ ++.||.+.+ ..+++|+.||.|+|.+..+.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 36777888889999999999999999988665 788876532 23689999999999876543
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.23 E-value=2e-10 Score=122.88 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=54.1
Q ss_pred ccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 377 g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
+++.+.+|. ..++.+|++.++++|++++.+++|++|... ++++.+|++.+| ++.++.||++++.+..
T Consensus 171 a~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 171 GLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSS 241 (407)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhH
Confidence 444455553 467788899999999999999999999864 567778888888 5999999999998863
No 72
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.22 E-value=1.5e-10 Score=122.31 Aligned_cols=70 Identities=26% Similarity=0.408 Sum_probs=56.0
Q ss_pred ccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 377 g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
+++.+.+|. ..++..+.+.+.+.|++++++++|++|..+++.+. |++++| ++.+|.||+|+|+|.. .|++
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g-~~~a~~vV~A~G~~~~--~l~~ 209 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVT-VTTADG-TYEAKKLVVSAGAWVK--DLLP 209 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEE-EEeCCC-EEEeeEEEEecCcchh--hhcc
Confidence 445565553 57788888888889999999999999998777654 778777 6999999999999863 4554
No 73
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.21 E-value=9.5e-10 Score=121.78 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=53.0
Q ss_pred eeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC-CCc--EEEc-CEEEECCChhHHHh
Q 008069 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYA-KTIISNATRWDTFG 446 (579)
Q Consensus 380 ~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~-dG~--~i~A-d~VV~a~~~~~~~~ 446 (579)
+..+| ..++.+|.+.+++.|++|+++++|++|..++++|+||... +|+ .+.+ +.||+|+|-+....
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 34455 8999999999999999999999999998878899998653 343 3566 58999999876543
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=4.8e-10 Score=111.52 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCC--EEEEEEeCC-----------CcEEEcCEEEECCChhHHHhhc
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQG--KAVGVRLSD-----------GREFYAKTIISNATRWDTFGKL 448 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~--~v~gV~~~d-----------G~~i~Ad~VV~a~~~~~~~~~L 448 (579)
.+...|.+.+.+.|++++.++.|++|..+++ ++.||.+.. ..+++|+.||.|+|....+.++
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~ 175 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAV 175 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHH
Confidence 5677788888899999999999999998776 688887642 2368999999999965544333
No 75
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.21 E-value=3e-10 Score=118.81 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=52.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCee-eccccccccC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT-FDVGSSVMFG 215 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~-~~~G~~~~~g 215 (579)
+||+|||||++|+++|..|++.|.+|+|+|+.+.+||.+.+....|+. .+.|+|.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t 60 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT 60 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec
Confidence 699999999999999999999999999999999999998877666654 4889998874
No 76
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.21 E-value=6.5e-10 Score=122.02 Aligned_cols=59 Identities=20% Similarity=0.416 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe--CCCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~--~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.|.+.+++.|++|+++++|++|..+++++++|.+ .+|+ ++.||.||+|+|.+..
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 468889999999999999999999999988888888876 3433 5899999999997653
No 77
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.20 E-value=4.9e-10 Score=122.08 Aligned_cols=63 Identities=30% Similarity=0.484 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC--CC--cEEEcCEEEECCChhHH
Q 008069 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWDT 444 (579)
Q Consensus 382 ~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~--dG--~~i~Ad~VV~a~~~~~~ 444 (579)
.+|...+...|.+.+++.|++|+++++|++|..+++++++|.+. +| ..++++.||+|+|.+..
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 34556788999999999999999999999999888899988763 33 35899999999997643
No 78
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.20 E-value=1.8e-10 Score=125.12 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=54.1
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
++++.+.+|. ..++..|++.+++.|++|+.+++|++|.. ++. ..|++.+| ++.||.||+|++.|..
T Consensus 170 ~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 170 EGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred EEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEccccccc
Confidence 4667777774 68899999999999999999999999975 333 35777777 5999999999999853
No 79
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.20 E-value=2e-10 Score=121.03 Aligned_cols=67 Identities=28% Similarity=0.292 Sum_probs=51.6
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
++++++.+|. ..++..|.+.+.+. |++|+.+++|++|.. + .|++.+|+ ++||.||+|+|+|.. .|++
T Consensus 132 ~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g~-i~a~~VV~A~G~~s~--~l~~ 202 (365)
T TIGR03364 132 GGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRGD-VHADQVFVCPGADFE--TLFP 202 (365)
T ss_pred EEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCCc-EEeCEEEECCCCChh--hhCc
Confidence 4556666653 57888999888776 999999999999964 2 46777775 789999999999863 4554
No 80
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.16 E-value=1e-09 Score=108.71 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe--CCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCC
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~--~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
..-..++...++++|+.++-+..|+.+... .+...+|.+++|..+.|+.+|+|+|+|.+ +||+.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~--klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN--KLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH--hhcCc
Confidence 456778889999999999999999999853 34556799999998999999999999974 78873
No 81
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.15 E-value=1e-09 Score=117.74 Aligned_cols=61 Identities=30% Similarity=0.492 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CCc--EEEcCEEEECCChhHH
Q 008069 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 384 G~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~~ 444 (579)
+...+...|.+.++++|++|+++++|++|.+++++|+||... +|+ .++|+.||+|+|.+..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456889999999999999999999999999999999999876 455 4789999999998764
No 82
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.14 E-value=3e-09 Score=118.59 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC--Cc-EEEcC-EEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--GR-EFYAK-TIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d--G~-~i~Ad-~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|+++++|++|..++++++||.+.+ ++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 67888999999999999999999999999889999988744 33 37785 7999999876
No 83
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.14 E-value=4.3e-10 Score=105.96 Aligned_cols=42 Identities=40% Similarity=0.647 Sum_probs=35.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
.++||+|||||++||+||++|+++|++|+|+||+..+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 469999999999999999999999999999999999988654
No 84
>PRK07121 hypothetical protein; Validated
Probab=99.13 E-value=1.9e-09 Score=118.23 Aligned_cols=61 Identities=30% Similarity=0.463 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHHcCceEEeCceeeEEEEeC-CEEEEEEeCC-Cc--EEEc-CEEEECCChhHH
Q 008069 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSD-GR--EFYA-KTIISNATRWDT 444 (579)
Q Consensus 384 G~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~v~gV~~~d-G~--~i~A-d~VV~a~~~~~~ 444 (579)
+...+...|.+.+++.|++|+++++|++|..++ ++++||+..+ |+ .++| +.||+|+|.+..
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 356789999999999999999999999999864 6888887643 33 4788 999999998754
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.10 E-value=6e-10 Score=122.30 Aligned_cols=58 Identities=28% Similarity=0.431 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC---Cc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d---G~--~i~Ad~VV~a~~~~~~ 444 (579)
.+++..+++.++++|++++.+++|++|..+++.+ +|++.+ |+ +++|+.||+|+|+|..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 5778888888999999999999999998876654 466543 53 6899999999999974
No 86
>PRK06847 hypothetical protein; Provisional
Probab=99.10 E-value=2.2e-09 Score=113.46 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
..+.+.|.+.+++.|++|+++++|++|..+++++. |.+.+|+++.+|.||.|.|.+....+.+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVT-VTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEE-EEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 36777888888888999999999999988777654 7788998999999999999987765544
No 87
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.09 E-value=1.8e-09 Score=114.56 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=55.5
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
++++.+.+|. ..++.+|++.++++| ..+..+++|..+..++ ++.+|.+.+|+ +.||.||+|+|+|..
T Consensus 143 ~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 143 GGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred eeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 4566777764 689999999999999 4566699999998764 66778888887 999999999999864
No 88
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.09 E-value=2.3e-09 Score=114.21 Aligned_cols=65 Identities=25% Similarity=0.185 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+.+.|++.+++.|++++.+++|+.+..+++++..+...++.+++||.||.|.|+...+.+-++.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 55567888999999999999999999998877665555555789999999999998877666654
No 89
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=1.3e-09 Score=118.65 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=53.6
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCC-EEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~-~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
++++.|.+|. ..++.+|.+.++++|++|+++++|++|..+++ .+. |.+ .+|+ +++||.||+|+|.|..
T Consensus 165 gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 165 AANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence 4566777763 78999999999999999999999999988654 443 432 3342 6899999999999874
No 90
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.08 E-value=4.8e-09 Score=112.86 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
.+-..|.+.+++.|++|+.+++|++|..+++++.+|. .+|++++||.||.|.|....+.+-+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADGVNSILAEKL 170 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeCCCHHHHHHc
Confidence 4556677888889999999999999998888877665 4667899999999999887655443
No 91
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.07 E-value=2.1e-09 Score=114.36 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
..+.+.|.+.+++.|++++.+++|++|..+++.+. |++++|+++++|.||.|.|.+..+.+.++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVR-LRLDDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEE-EEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence 36777888888889999999999999998877766 77888888999999999999887766654
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.07 E-value=1.6e-09 Score=121.39 Aligned_cols=64 Identities=28% Similarity=0.444 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe--CCEEEEEEe---CCCc--EEEcCEEEECCChhHH-Hhhcc
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRL---SDGR--EFYAKTIISNATRWDT-FGKLL 449 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~--~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~-~~~Ll 449 (579)
.+++.+|++.++++|++|+.+++|++|..+ ++++++|++ .+|+ ++.+|.||+|+|+|.. +.+++
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 688999999999999999999999999887 477877775 2444 5899999999999963 33444
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.04 E-value=2.3e-09 Score=116.02 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=52.3
Q ss_pred CccceeCCC---hHHHHHHHHHHHHH-cCceEEeCceeeEEEEe-CCEEEEEE---eCCCc--EEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG---VGGIAKSLAKGLAD-KGSEILYKANVTKVILE-QGKAVGVR---LSDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG---~~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~-~~~v~gV~---~~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
++.+.|.++ ...+.++|.+.+.+ .|++++++++|+.|..+ ++.+. |. +.+|+ +++||.||+|+|.|..
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 355666665 36888999999865 48999999999999877 65554 43 34453 6899999999999974
No 94
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=9.3e-09 Score=112.05 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=53.0
Q ss_pred CccceeCCC---hHHHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCE-EEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG---VGGIAKSLAKGLADKG-SEILYKANVTKVILEQGK-AVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG---~~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~-v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
++.+.|.+| ...++.+|.+.+++.| ++|+++++|++|..++++ +. |.+ .+|+ +++|+.||+|+|.|..
T Consensus 170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 456667666 3689999999999987 799999999999985543 43 443 3454 6899999999999974
No 95
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.04 E-value=7.1e-09 Score=112.08 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeC--CCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS--DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~--dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++. +++ .+.+|.||+|+|.+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 578899999999999999999999999985 5678887763 443 3789999999998764
No 96
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.03 E-value=5.1e-09 Score=110.92 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+.+.| ++|+.+++|++|..+++++. |++++|+++.+|.||.|.|.+..+.+.++
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLDDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 67778888888888 99999999999998877765 78889989999999999999887766664
No 97
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.03 E-value=4.6e-09 Score=112.34 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+.+.|.+.+++.|++|+.+++|++|..+++.+. |++.+|++++||.||.|.|.+....++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWL-LTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 5667888888888999999999999998777765 778899889999999999999988887754
No 98
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.02 E-value=1.1e-08 Score=113.67 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC-CCc--EEEcC-EEEECCChhHH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~-dG~--~i~Ad-~VV~a~~~~~~ 444 (579)
-..+...|.+.+++.|++|+++++|++|..++++|+||... +|+ .+.|+ .||+|+|....
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 35788899999999999999999999999988999998763 454 47785 79999998764
No 99
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=1.2e-09 Score=119.83 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC----cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG----REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG----~~i~Ad~VV~a~~~~~~ 444 (579)
.++...++..++++|++++.+++|++|..+++.+ +|++.++ .++.|+.||.|+|+|..
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLW-RVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEE-EEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 5788888899999999999999999999876654 4666554 25899999999999964
No 100
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.01 E-value=2.1e-08 Score=111.85 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC-Cc--EEEc-CEEEECCChhHHHhhc
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYA-KTIISNATRWDTFGKL 448 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d-G~--~i~A-d~VV~a~~~~~~~~~L 448 (579)
..+..+|.+.++++|++|+++++|++|..++++|+||...+ |+ ++.| +.||+|+|.+.....|
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em 287 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQL 287 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHH
Confidence 47889999999999999999999999988889999987754 33 4676 6899999988654333
No 101
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.01 E-value=2.7e-08 Score=111.04 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC--CCc-EEEc-CEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR-EFYA-KTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~--dG~-~i~A-d~VV~a~~~~~~ 444 (579)
..++..|.+.++++|++|+++++|++|..+++++++|+.. ++. +++| +.||+|+|.+..
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 5788999999999999999999999999888899888763 332 4788 999999999864
No 102
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.01 E-value=8.7e-09 Score=109.51 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeC-CCcEEEcCEEEECCChhHHHhhccC
Q 008069 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLS-DGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~-dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
..+.+.|.+.+.+.+ ++++.+++|+.+..+++.+. |+++ ||++++||.||-|=|.+..+.+.++
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 477888999998887 89999999999999988888 8888 9999999999999999999888887
No 103
>PRK07190 hypothetical protein; Provisional
Probab=98.99 E-value=8.6e-09 Score=112.48 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-..|.+.+++.|++|+.+++|++|..+++++. |.+.+|++++|+.||.|.|...++.+.++
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 4555677778888999999999999998887766 55678888999999999999998877765
No 104
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.98 E-value=1.2e-08 Score=109.31 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCC-C--cEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD-G--REFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~d-G--~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+.+. |++++++++|++|..+++.+. |++.+ + .+++||.||.|.|.+..+.+.++
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 4667777777775 799999999999988777655 66653 3 35999999999999988766664
No 105
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.98 E-value=1.3e-08 Score=109.43 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHH-cCceEEeCceeeEEEEeCCEEEEEEe-CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~v~gV~~-~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+.+.|.+.+++ .|++|+++++|++|..+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 4688888888875 49999999999999888888888653 3454 589999999999854
No 106
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98 E-value=1.5e-08 Score=112.91 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeC-CCc--EEEcC-EEEECCChhHH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~-dG~--~i~Ad-~VV~a~~~~~~ 444 (579)
...++..|.+.+++.|++|+++++|++|..+ +++|+||... +|+ ++.|+ .||+|+|.+..
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 3577888888899999999999999999986 5789998764 343 47787 59999998764
No 107
>PRK06184 hypothetical protein; Provisional
Probab=98.98 E-value=9.5e-09 Score=113.03 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe---CCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-..|.+.+.+.|++|+++++|++|..+++.++ |.+ .++++++||.||.|.|.+..+.+.++
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 4556777888888999999999999998877765 444 55668999999999999998877775
No 108
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.97 E-value=9.7e-09 Score=104.36 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC-CCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~-dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+++.|++++++++|+++..+++++. +.+. ++.+++||.||.|.|.+..+.+.++
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence 5667788888889999999999999998887765 4443 4457999999999999876655554
No 109
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.2e-08 Score=114.75 Aligned_cols=57 Identities=12% Similarity=0.309 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CCc--EEEcCEEEECCChhHH
Q 008069 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 388 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~~ 444 (579)
+.+.|.+.+++.|++|++++.|++|..++++|.||... +|+ .+.|+.||+|+|.+..
T Consensus 172 l~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 172 AYQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 34667778888899999999999999888999998864 454 5889999999998653
No 110
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.96 E-value=1.4e-08 Score=107.64 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 386 ~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
..+.+.|.+.+.+. |++++++++|++|..++++++ |.+++|++++||.||.|.|.+..+.+.++
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 36778888888884 999999999999988777765 77888888999999999999987766665
No 111
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.96 E-value=1.5e-08 Score=107.52 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+++.| ++++ +++|++|..+++.+. |++.+|++++||.||.|.|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 67778888888888 8888 999999987777765 88888888999999999999877767665
No 112
>PLN02661 Putative thiazole synthesis
Probab=98.96 E-value=3e-08 Score=101.67 Aligned_cols=41 Identities=34% Similarity=0.687 Sum_probs=37.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHc-CCcEEEEecCCCCCcce
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSS 196 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~ 196 (579)
.++||+|||||++|++||+.|+++ |++|+|+||...+||..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 468999999999999999999986 89999999999888743
No 113
>PRK06834 hypothetical protein; Provisional
Probab=98.96 E-value=8.5e-09 Score=112.65 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-..|.+.+++.|++|+.+++|++|..+++.+. |++.+|+++++|.||.|.|.+....++++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 5666788888888999999999999998887765 77778888999999999999988777765
No 114
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.96 E-value=1.6e-08 Score=107.72 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 387 ~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
.+.+.|.+.+.+.| ++++++++|++|..+++.+. |.+.+|+++.||.||.|.|.+....+.+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 46667777777765 89999999999988777665 7788898899999999999998765544
No 115
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.96 E-value=2.7e-08 Score=109.46 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeC-CCc--EEEcC-EEEECCChhHH
Q 008069 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~-dG~--~i~Ad-~VV~a~~~~~~ 444 (579)
..+...|.+.+.+. |++|+++++|++|..++++|+||... +|+ ++.|+ .||+|+|.+..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccC
Confidence 45777777776664 99999999999999888899998753 343 47886 79999998754
No 116
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.96 E-value=4.3e-09 Score=112.30 Aligned_cols=69 Identities=26% Similarity=0.503 Sum_probs=62.6
Q ss_pred cCccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 375 FGGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 375 ~~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.++++.|..|. ..++.+|++.+++.|+.|..+++|++|....+++.+|++..|. |++..||.|+|.|.-
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence 36788888885 7899999999999999999999999999988888899999995 999999999999974
No 117
>PRK10015 oxidoreductase; Provisional
Probab=98.96 E-value=1.1e-08 Score=109.96 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
.+-..|.+.+++.|++++.+++|++|..+++++.+|.. ++.+++||.||.|.|....+.+-+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v~~~l 170 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSMLGRSL 170 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhhhccc
Confidence 44556778888899999999999999988888877765 445799999999999877665544
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=2.3e-08 Score=111.18 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|++++.++++..++++|+||... +|+ .+.|+.||+|+|...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4678888888888899999999999999989999998764 333 578999999999875
No 119
>PRK07236 hypothetical protein; Provisional
Probab=98.96 E-value=2.7e-08 Score=105.67 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=42.3
Q ss_pred CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 400 GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 400 G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
+++|+++++|++|..+++.+. |++++|+++++|.||.|-|.+....+.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVT-ARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEE-EEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 468999999999998877766 7889999999999999999888776655
No 120
>PRK06185 hypothetical protein; Provisional
Probab=98.95 E-value=1.9e-08 Score=107.60 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEe--CCCc-EEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGR-EFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~--~dG~-~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+.+. |++++.+++|+++..+++++.+|.+ .+|+ +++||.||.|.|.+..+.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4566777777664 8999999999999988888876654 4664 6999999999999987777765
No 121
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.95 E-value=1.9e-08 Score=107.36 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
..+.+.|.+.+.+.|++++.+++|++|..+++.+. |++++|+++.+|.||.|.|.+..+.+.++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVT-VTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEE-EEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 36778888888889999999999999998877765 77888989999999999999887776664
No 122
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.95 E-value=2.2e-08 Score=111.24 Aligned_cols=42 Identities=48% Similarity=0.669 Sum_probs=38.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC--CCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~~ 197 (579)
.++||+|||+|.+||+||..++++|.+|+|+||.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 7888654
No 123
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.95 E-value=3e-08 Score=110.60 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+...|.+.+++.|++|++++.|++|..+++++.||.. .+|+ .+.|+.||+|+|.+..
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 467788888888889999999999999988899988865 3564 5899999999998753
No 124
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.93 E-value=2.7e-08 Score=105.90 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+.+. |++++.+++|+++..+++++. |.+++|++++||.||.|.|.+..+.+.++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWE-LTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEE-EEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4566777777776 999999999999987777654 77888888999999999999988777765
No 125
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.93 E-value=3.5e-08 Score=109.19 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeC-CEEEEEEeC-------CC-cEEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLS-------DG-REFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~v~gV~~~-------dG-~~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|+.++.|++|..++ +++.||.+. ++ ..+.|+.||+|+|.+.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 5788899999999999999999999998875 588888663 22 3588999999999865
No 126
>PRK07588 hypothetical protein; Provisional
Probab=98.92 E-value=2e-08 Score=106.96 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
.+...|.+.+. .|++|+++++|++|+.+++.+. |++++|+++++|.||.|-|.+....+.+
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence 45555555554 3799999999999998888776 7889999899999999999988776654
No 127
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.92 E-value=3.5e-08 Score=103.88 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC--cEEEcCEEEECCChh
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRW 442 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG--~~i~Ad~VV~a~~~~ 442 (579)
.++.++|.+.++++|++++.+++|+++..+++++++|.+.++ ..++||.||+|+|.|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 588999999999999999999999999999999998887776 479999999999999
No 128
>PRK09126 hypothetical protein; Provisional
Probab=98.92 E-value=2.2e-08 Score=106.58 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=48.7
Q ss_pred HHHHHHHHHH-HcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 388 IAKSLAKGLA-DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 388 l~~aL~~~l~-~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
+.+.|.+.+. ..|++|+.+++|+++..+++.+. |.+++|+++++|.||.|.|......+.++
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQ-VTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEE-EEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 3444555543 46899999999999988777654 77889989999999999998877766664
No 129
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.92 E-value=6.2e-08 Score=108.53 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.++++| ++|+.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 356677888888876 999999999999988888888753 3554 589999999999876
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.92 E-value=5.8e-08 Score=108.90 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEE-eCCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~-~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|+.++.|+++.. ++++|.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 57888999999999999999999999988 6788999865 3564 578999999998765
No 131
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=6.2e-08 Score=108.42 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeC-CEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+...|.+.+++.|++|++++.|++|..++ ++|.||.. .+|+ .+.|+.||+|+|.+..
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 4688899999999999999999999999875 78999875 3565 5889999999998753
No 132
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=7.7e-08 Score=106.89 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC-CCc--EEEcC-EEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~-dG~--~i~Ad-~VV~a~~~~~~ 444 (579)
..+...|.+.+++.|++|+++++|++|..++++|+||... +|+ .+.|+ .||+|+|....
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 5678888899999999999999999999888899998764 454 47886 69999987654
No 133
>PRK07045 putative monooxygenase; Reviewed
Probab=98.91 E-value=3e-08 Score=105.43 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHH-cCceEEeCceeeEEEEeCCE-EEEEEeCCCcEEEcCEEEECCChhHHHhhc
Q 008069 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGK-AVGVRLSDGREFYAKTIISNATRWDTFGKL 448 (579)
Q Consensus 387 ~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~-v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~L 448 (579)
.+.+.|.+.+.+ .|++++++++|+.|..+++. ++.|++++|+++.+|.||.|-|....+.+.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 456667777654 47999999999999986544 456888899999999999999999887774
No 134
>PRK08013 oxidoreductase; Provisional
Probab=98.91 E-value=2.6e-08 Score=106.42 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-..|.+.+++. |++++++++|++|..+++.+. |++.+|++++||.||-|-|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 5666777777775 799999999999988777665 77889999999999999999998888775
No 135
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.90 E-value=2e-08 Score=106.68 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+.+.|+..+++++|++|..+++.+. |++++|+++++|.||.|.|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVT-VTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 5677788888887655588999999998888776 78888989999999999999887766664
No 136
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-07 Score=96.00 Aligned_cols=323 Identities=17% Similarity=0.235 Sum_probs=172.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeC---------------------CeeeccccccccC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD---------------------GYTFDVGSSVMFG 215 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~---------------------g~~~~~G~~~~~g 215 (579)
.|||+|+|.|..-...+..|+..|.+|+.+||++.-||...+.+.. .+.+|+-+-.++.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmA 83 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMA 83 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhc
Confidence 4999999999999999999999999999999999999988775521 0122222222221
Q ss_pred CCCCCChHHHHHHHHHcCCceeEeeCCCeEEEEcCCCceEEecCCHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhh
Q 008069 216 FSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYS-DFVAELTSKFPHEKEGVLAFYGECWKIFNALN 294 (579)
Q Consensus 216 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~~ 294 (579)
...+.++|.+-|+.--+......-.|.+.+|..+.++.... .+...+...+ ++..+.+|+..+....+.-.
T Consensus 84 ------n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e~~~ 155 (440)
T KOG1439|consen 84 ------NGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDEEDP 155 (440)
T ss_pred ------cchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhhhcc
Confidence 12344555555542111111112234445566666665533 2222222222 34556666665543322111
Q ss_pred hhhhhccchhhHHHhhhhcChhhhhHHhhhc--cccHHHHHHHhcCCHHHHHHHhhhhhhhhcCCCCCchHHHHHH----
Q 008069 295 SLELKSLEEPIYLFGQFFKRPLECLTLAYYL--PQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASM---- 368 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---- 368 (579)
. .+..+. ..++.++..+++.......+.......+-.....+.|...+..
T Consensus 156 ~------------------------~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~ 211 (440)
T KOG1439|consen 156 K------------------------TWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILL 211 (440)
T ss_pred c------------------------cccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHH
Confidence 0 000111 1256666667666555444443222111112222333322211
Q ss_pred ---HHhhhhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEE-eCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 369 ---VLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 369 ---~~~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~-~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.+.........||..|.+.+++.+++...=.||++.+|.++.+|.. +++++.+|... ++...++.||+...-
T Consensus 212 Y~~S~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k~vi~dpSY--- 287 (440)
T KOG1439|consen 212 YVRSFARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCKKVICDPSY--- 287 (440)
T ss_pred HHHHHhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecC-CceeecceEEecCcc---
Confidence 1111111235789999999999999998888999999999999998 56777777643 445677777752221
Q ss_pred HhhccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCCCccceeeccchhhhcCCcceEEEEcCCCCCCCCCCCC
Q 008069 445 FGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEG 524 (579)
Q Consensus 445 ~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~s~~dp~~aP~G 524 (579)
.|...++.-+.++ .+.+--....+..+.+.-+++++.. . ......||+..-|. +...+|+|
T Consensus 288 ---------~~~~~k~vg~viR------~iCIl~hpi~~t~~~~S~qiiipq~--q-~~rksdi~v~~~ss-~~~vcpeG 348 (440)
T KOG1439|consen 288 ---------FPQKVKKVGQVIR------AICILSHPIPNTNDAESAQIIIPQF--Q-VGRKSDIYVFGLSS-AHNVCPEG 348 (440)
T ss_pred ---------chHHHHhhhheee------eeEEecCCcCcCCccceeeEEechh--h-hCCcccEEEEEecc-CCCcCCCc
Confidence 1222111111111 1111112112222222334555432 1 12234577655332 34578999
Q ss_pred eeEEEEEecc
Q 008069 525 HHILHIFTIC 534 (579)
Q Consensus 525 ~~~l~~~~~~ 534 (579)
+-+.++++..
T Consensus 349 ~yia~vsT~~ 358 (440)
T KOG1439|consen 349 KYIAYVSTTV 358 (440)
T ss_pred eEEEEEEecc
Confidence 9998888864
No 137
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=6.7e-08 Score=107.84 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
-..+...|.+.+++.|++|++++.|+++..+ +++|.||.. .+|+ .+.|+.||+|+|....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 3578889998888899999999999999985 789999875 3564 4789999999998753
No 138
>PRK12839 hypothetical protein; Provisional
Probab=98.89 E-value=6.7e-08 Score=107.43 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeC--CCc-EE-EcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS--DGR-EF-YAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~--dG~-~i-~Ad~VV~a~~~~~~ 444 (579)
..++..|.+.+++.|++|+++++|++|..+ +++|+||... +|+ .+ .++.||+|+|.+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 578889999999999999999999999875 6789998753 454 24 45899999998764
No 139
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.89 E-value=4.1e-08 Score=104.72 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 384 G~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
....+.+.|.+.+++.|++++++++|++|..+++.+ .|++ +++++.+|.||+|+|.+.
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~-~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGF-GVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeE-EEEE-CCcEEEcCEEEECCCCcc
Confidence 357889999999999999999999999998766644 4666 566799999999999754
No 140
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.88 E-value=9.2e-08 Score=107.37 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
-..+...|.+.+.+.|++|+.++.++++..+ ++++.||.. .+|+ .+.|+.||+|+|....
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 3578889999888899999999999998876 678999875 3564 5789999999998753
No 141
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=4e-08 Score=109.64 Aligned_cols=59 Identities=29% Similarity=0.378 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
-..+...|.+.+++.|++|+.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 3578889999999999999999999999988888888763 3564 589999999999875
No 142
>PLN02697 lycopene epsilon cyclase
Probab=98.87 E-value=2e-08 Score=109.78 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
..+.+.|.+.+.+.|+++ ++++|++|..+++.+..+.+.+|.+++|+.||.|.|.+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 356778888888889998 788999998877776556677888999999999999987
No 143
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.87 E-value=7.1e-08 Score=103.20 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+.+. |++++++++|++|..+++.+. |++++|++++||.||.|-|....+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 3455666666664 799999999999988777765 88889999999999999999887777665
No 144
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.87 E-value=7.2e-09 Score=112.75 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++.+. +++.+|+++++|.||+++|....
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVI-VHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEE-EEECCCCEEEeCEEEEeecCCcc
Confidence 56778899999999999999999999987666554 66778888999999999997654
No 145
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=9e-08 Score=107.61 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHc--------C-----ceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADK--------G-----SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~--------G-----~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+.+.|.+.+++. | ++|+.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 56788888888776 7 999999999999988888888764 3564 589999999999865
No 146
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=1.4e-07 Score=105.34 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+...|.+.+.+.|++++.++.|+++..+ ++++.||.. .+|+ .+.|+.||+|+|....
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 568888998888899999999999999986 578989875 2454 5789999999998653
No 147
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.86 E-value=4.1e-08 Score=108.70 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHc-CceEEeCceeeEEEEeC--CEEEEEEeC-CCc--EEEcCEEEECCChhH
Q 008069 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQ--GKAVGVRLS-DGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~--~~v~gV~~~-dG~--~i~Ad~VV~a~~~~~ 443 (579)
-..+.+.|.+.+++. |++|++++.|+++..++ +++.||... +|+ .+.|+.||+|+|...
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 357888898888765 99999999999998863 788888653 454 378999999999854
No 148
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.86 E-value=1.4e-08 Score=105.84 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe--CCCc--EEEcCEEEECCChhHHHhhccCC
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDGR--EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~--~dG~--~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
..+-+.|.+.+++.|++|+++++|+.+..++++++.+.. .+|+ +++||.||-|-|.+..+.+.++.
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence 367778889999999999999999999998887664332 2343 68999999999999988777653
No 149
>PRK05868 hypothetical protein; Validated
Probab=98.86 E-value=3.9e-08 Score=103.91 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 388 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
|.+.|.+.+ ..|++++++++|++|..+++.+. |+++||++++||.||-|-|.+....+.+.
T Consensus 107 L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 107 LVELLYGAT-QPSVEYLFDDSISTLQDDGDSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred HHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 444443333 45899999999999987777665 88899999999999999999998877764
No 150
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.85 E-value=7.4e-08 Score=105.49 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHH-cCceEEeCceeeEEEEeCCEEEEEEeCC-C--cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSD-G--REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~v~gV~~~d-G--~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.|.+.+++ .|++|+.++.|++|..+++++.||...+ + ..+.|+.||+|+|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 5788899998987 6999999999999998888888887654 3 35899999999998764
No 151
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.85 E-value=2.6e-08 Score=98.39 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=69.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEee--CCe-eeccccccccCCCCCCChHHHHHHHHHcCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER--DGY-TFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~--~g~-~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~ 234 (579)
+|++|||||++|+..|..|++.|.+|.|+||.+.+||.|-+... .|. .+.-|+|.|+- ....+++.+.+.--
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-----~~~~Vwdyv~~F~e 76 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-----DNKRVWDYVNQFTE 76 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-----CchHHHHHHhhhhh
Confidence 79999999999999999999999999999999999999876554 353 56679999984 22334444443311
Q ss_pred ceeEeeCCCeEEEEcCCCceEEecCCHHHHHH
Q 008069 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVA 266 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 266 (579)
+ .+-.... +.+.+|..+.++-++..+..
T Consensus 77 -~--~~Y~hrV-la~~ng~~~~lP~nl~ti~q 104 (374)
T COG0562 77 -F--NPYQHRV-LALVNGQLYPLPFNLNTINQ 104 (374)
T ss_pred -h--hhhccce-eEEECCeeeeccccHHHHHH
Confidence 1 0101111 34456777777777665443
No 152
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.85 E-value=6.3e-08 Score=107.45 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeC--CC--cEEEcCEEEECCChhHHHhhccCC
Q 008069 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 388 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~--dG--~~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
+-+.|.+.+.+. |++|+++++|++|..++++++ |++. +| ++++||.||-|-|....+.+.++.
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~ 182 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLGV 182 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCC
Confidence 445566666664 899999999999998887775 5554 56 369999999999999988777753
No 153
>PRK08244 hypothetical protein; Provisional
Probab=98.85 E-value=4e-08 Score=107.88 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe--CCC-cEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDG-REFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~--~dG-~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-+.|.+.+++.|++|+.+++|++|..++++++ |++ .+| ++++||.||.|.|.+..+.++++
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 4556677778888999999999999988877765 444 356 47999999999999988877775
No 154
>PRK08275 putative oxidoreductase; Provisional
Probab=98.84 E-value=6.9e-08 Score=107.29 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+.+.|.+.+++.|++|+.++.|++|..+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 467888999899999999999999999987 678888864 3565 478999999999865
No 155
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.84 E-value=1.1e-07 Score=103.57 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.|.+.+++.|++++.+ .|+.+..+++++.+|.. +|+.+.++.||+|+|.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 478889999999999999876 79999888888988877 5667999999999999864
No 156
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.84 E-value=5.5e-08 Score=104.91 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=53.5
Q ss_pred eeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEe--CCEEEEEEeCC-CcEEEcCEEEECCChhH
Q 008069 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSD-GREFYAKTIISNATRWD 443 (579)
Q Consensus 380 ~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~--~~~v~gV~~~d-G~~i~Ad~VV~a~~~~~ 443 (579)
++.++...+.+.|.+.+++.|++|+++++|++|..+ ++++++|...+ +.++.++.||+|+|.+.
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 455666789999999999999999999999999886 57788887643 35799999999999653
No 157
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=1.3e-07 Score=105.54 Aligned_cols=59 Identities=24% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHH-cCceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.|.+.+.+ .|++++.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|....
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 4678888888776 58999999999999988888888764 3564 4789999999998753
No 158
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.84 E-value=5e-08 Score=109.99 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CCc--EEEcCEEEECCChhHH
Q 008069 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 384 G~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~~ 444 (579)
.-..+...|.+.+.+.|++|+.++.|++|..+++++.||... +|+ .+.|+.||+|+|.+..
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 345677788888999999999999999999988999887753 565 3679999999998764
No 159
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.83 E-value=9e-08 Score=101.63 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 388 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
+...|.+.+.+. |++++.+++|++++.+++.++ |++++|+++++|.||.|-|.+....+.++
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence 445566665554 689999999999998877765 88899999999999999999988877664
No 160
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.83 E-value=2.8e-08 Score=108.93 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+...|.+.+.+. |+++ +...|++|..+++++.+|.+.+|..+.|+.||+|+|.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4556677777766 6787 467899999999999999999999999999999999764
No 161
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.82 E-value=3.1e-08 Score=103.13 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
.+...+.+.++++ +.+|+ ..+|++|..+++++.||.+.+|+++.+|.||+|+|++
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 4455666777774 56664 7889999999999999999999999999999999983
No 162
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=1.7e-07 Score=104.08 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCE-EEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~-v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|++++.|+++..++++ ++||.. .+|+ .+.|+.||+|+|...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 567888888888899999999999999987664 888764 4564 589999999999865
No 163
>PLN02463 lycopene beta cyclase
Probab=98.80 E-value=3.8e-08 Score=105.82 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.+.+.|.+.+.+.|++++ .++|++|..+++++ .|++++|++++||.||.|.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~-~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKS-LVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeE-EEEECCCCEEEcCEEEECcCCCcC
Confidence 566677788888899986 67999999877765 488899989999999999997653
No 164
>PLN02815 L-aspartate oxidase
Probab=98.79 E-value=1.3e-07 Score=105.30 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CceEEeCceeeEEEEeC-C---EEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQ-G---KAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~-~---~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++. |++|+.++.+++|..++ + +|.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46788888888776 89999999999999853 3 3788875 3554 468999999999865
No 165
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.79 E-value=1.2e-07 Score=100.98 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEE-eCCEEEEEEeC-CCc--EEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLS-DGR--EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~-~~~~v~gV~~~-dG~--~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+...|.+.+.+.|++++++++++++.. +++.+ .|++. +|+ +++||.||-|-|.+..+.+.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 5556677777888999999999888865 33333 46664 775 68999999999999988777654
No 166
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.79 E-value=3.6e-08 Score=104.86 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~--~i~Ad~VV~a~~~~~ 443 (579)
.++.+.|.+.+++.|++++++++|+++..+++++..+...+|+ .+++|.||+|+|...
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 3789999999999999999999999999888888776655554 489999999999753
No 167
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.79 E-value=1.1e-07 Score=104.46 Aligned_cols=58 Identities=21% Similarity=0.419 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC--Cc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--GR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d--G~--~i~Ad~VV~a~~~~~~ 444 (579)
..+.++|.+.++ .|++|+.++.|++|..+++++.||...+ |+ .+.|+.||+|+|.+..
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 467888888776 6999999999999988888898887643 33 5889999999998763
No 168
>PRK06753 hypothetical protein; Provisional
Probab=98.79 E-value=1.2e-07 Score=100.27 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+.+.|.+.+. +.+|+++++|++|..+++++. |++++|+++++|.||.|-|.+....+.+.
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 45555555553 358999999999997777765 77889999999999999999988877765
No 169
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.79 E-value=1.7e-08 Score=96.95 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
.+.+.|.+.+++.|.+++++++|++|..+++++. |++.++++++||.||+|+|..
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~-v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWT-VTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETTTEE-EEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEeccEEE-EEEEecceeeeeeEEEeeecc
Confidence 3445566667777889999999999999988855 899999889999999999964
No 170
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.78 E-value=2.3e-07 Score=103.23 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEE-EEeCCCc-EEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVG-VRLSDGR-EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~g-V~~~dG~-~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+-..|.+.+.+. |++|+++++|+++..+++.+.. ++..+|. ++++|.||.|.|.+..+.++++.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence 3445666667665 6899999999999988776652 2234554 68999999999999888777753
No 171
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=2.1e-07 Score=104.06 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeC----CEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~----~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|+.++.|++|..++ +++.||.. .+|+ .+.|+.||+|+|...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 5788899999999999999999999998775 78888865 3554 478999999999875
No 172
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.77 E-value=2.4e-07 Score=98.91 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEe---CCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.|.+.|.+.+.+. |++++++++|+++..+++++. |++ .+++++++|.||-|-|.+....+.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 6677777777664 789999999999988777654 444 34457999999999999998888764
No 173
>PRK06126 hypothetical protein; Provisional
Probab=98.77 E-value=9.1e-08 Score=106.42 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-..|.+.+++. |++|+++++|++|..++++++ +.+ .+|+ ++++|.||.|.|.+..+.+.++
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 3555677777664 799999999999998877766 443 3464 6899999999999998877775
No 174
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.76 E-value=1.6e-07 Score=100.02 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=49.6
Q ss_pred HHHHHHHHHHH-cCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 388 IAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 388 l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
+-..|.+.+.+ .|++++++++|++|..+++++. |++++|.++.+|.||.|.|.+..+.+.++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence 44556666655 4799999999999987777765 78888888999999999999887766654
No 175
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.76 E-value=1.2e-07 Score=101.03 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEE-eCCEEEEEEe-CCCc--EEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~-~~~~v~gV~~-~dG~--~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+.+.|.+.+.+.|++++++++|++|.. +++.+ .|++ .+|+ +++||.||-|-|......+.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 4455666667778999999999999976 34443 3666 4674 58999999999999888777754
No 176
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.76 E-value=2.6e-07 Score=110.67 Aligned_cols=43 Identities=40% Similarity=0.527 Sum_probs=39.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
+..+||+|||+|.+|++||..+++.|.+|+|+||.+..||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4568999999999999999999999999999999999988653
No 177
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.76 E-value=1.9e-07 Score=102.67 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCC-Cc--EEEcCEEEECCChhH
Q 008069 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYAKTIISNATRWD 443 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~d-G~--~i~Ad~VV~a~~~~~ 443 (579)
-..+.+.|.+.+++. |++|+.++.|++|..+++++.||.+.+ ++ .+.|+.||+|+|...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 357888999888876 899999999999988888899887643 33 589999999999865
No 178
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.76 E-value=1.8e-07 Score=98.93 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCC
Q 008069 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
..+-..|.+.+++.+ ++++.+++|++|..+++.+. |.+.++ +++||.||.|-|....+.+.+..
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~~-~~~adlvIgADG~~S~vR~~l~~ 168 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFDDK-QIKCNLLIICDGANSKVRSHYFA 168 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEcCC-EEeeCEEEEeCCCCchhHHhcCC
Confidence 467778888888875 88999999999988877765 777776 89999999999999888777653
No 179
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.74 E-value=3.1e-07 Score=102.52 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+...|.+.+.+. |++++.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|....
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 46778888877775 7999999999999998899888754 4664 5899999999998653
No 180
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=3.6e-07 Score=102.10 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcC----ceEEeCceeeEEEEe-CCEEEEEEeC---CCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKG----SEILYKANVTKVILE-QGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G----~~I~l~~~V~~I~~~-~~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+...|.+.+++.+ ++++.++.++++..+ +++|.||... +|+ .+.|+.||+|+|.+..
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 467778877776654 779999999999985 6889998864 344 4789999999998763
No 181
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.73 E-value=1.2e-07 Score=102.58 Aligned_cols=42 Identities=38% Similarity=0.508 Sum_probs=39.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
..++|+|||||++||+||..|.+.|++|+||||++.+||...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 358999999999999999999999999999999999999754
No 182
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.73 E-value=5.1e-07 Score=99.92 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHc-CceEEeCceeeEEEEeC------CEEEEEEeC---CCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQ------GKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~------~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+...|.+.+++. |++|+.++.|+++..++ +++.||... +|+ .+.|+.||+|+|....
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 46777888888765 89999999999998754 789998763 454 4889999999998753
No 183
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.72 E-value=3e-07 Score=102.91 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH----cCceEEeCceeeEEEEeC-CEEEEEEeC---CCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLAD----KGSEILYKANVTKVILEQ-GKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~----~G~~I~l~~~V~~I~~~~-~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++ .|++|+++++|++|..++ ++|+||... +|+ .+.|+.||+|+|.+.
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3455566555544 389999999999998854 589998864 454 578999999999864
No 184
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.72 E-value=2.4e-07 Score=98.57 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC------C--cEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD------G--REFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d------G--~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-+.|.+.+.+.|++++.. .|++|..+++.+. |.+.+ | .+++||.||.|.|....+.+.++
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEE-EEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 45567777888889999754 6999988777654 55542 2 36999999999998887766654
No 185
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.72 E-value=1.9e-07 Score=95.16 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=40.7
Q ss_pred HHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 391 SLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 391 aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+.+.+++.|+++++ ++|++|..+++.+. |.+.+|+++++|.||+|+|...
T Consensus 62 ~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~-v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 62 KMKEQAVKFGAEIIY-EEVIKVDLSDRPFK-VKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHcCCeEEE-EEEEEEEecCCeeE-EEeCCCCEEEeCEEEECCCCCc
Confidence 344556777999998 89999988766554 7777888899999999999754
No 186
>PRK07538 hypothetical protein; Provisional
Probab=98.70 E-value=2e-07 Score=100.06 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHH-cCc-eEEeCceeeEEEEeCCEEEEEEeCCC-----cEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLAD-KGS-EILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~-~G~-~I~l~~~V~~I~~~~~~v~gV~~~dG-----~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.|.+.|.+.+.+ .|. +|+++++|+++..+++.+. +.+.++ ++++||.||-|-|.+....+.+.
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~ 172 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY 172 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence 556667777655 364 6999999999987666533 333332 47999999999999988777664
No 187
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.70 E-value=6.3e-07 Score=99.86 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
-..+...|.+.+.+. |++++.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|....
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 356888888887764 7999999999999998899998764 3664 5889999999998653
No 188
>PRK06116 glutathione reductase; Validated
Probab=98.70 E-value=2.4e-08 Score=108.34 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|++++++++|++|..++++...|.+.+|+++.+|.||+++|....
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 46778888999999999999999999987654423377788989999999999986543
No 189
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.69 E-value=1.6e-07 Score=100.82 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
.|.+.|.+.+. ++.++++++|++|..+++++. |.+++|+++++|.||.|.|.+....+.+
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQ-VLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEE-EEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 56667766663 356899999999998777765 7788998999999999999998876655
No 190
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.68 E-value=1.3e-07 Score=100.37 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.|.+.+.+.|++++ .++|+.+..+++....|++.+|++++||.||.|.|.+..
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~ 142 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPL 142 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchh
Confidence 3566778888888899885 678999887744445588888888999999999998763
No 191
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.65 E-value=4e-07 Score=98.35 Aligned_cols=63 Identities=25% Similarity=0.321 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcC---ceEEeCceeeEEEEe-------CCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKG---SEILYKANVTKVILE-------QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G---~~I~l~~~V~~I~~~-------~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+...|.+.+.+.+ ++++++++|++|..+ ++.+ .|++.+|++++||.||.|-|....+.+.++
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 55667777777775 899999999999753 2344 478889999999999999999998888775
No 192
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.65 E-value=3.7e-08 Score=105.94 Aligned_cols=58 Identities=31% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC---CcEEEcCEEEECCChhHHHhhccC
Q 008069 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d---G~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
|.+.+++.|++|++++.|.++..+++++++|++.+ ..+++||.||-|+|--. +..+.+
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~-l~~~aG 156 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGD-LAALAG 156 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 33445677999999999999999999999998865 45799999999999543 334444
No 193
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.64 E-value=5.8e-07 Score=95.87 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
+||+|||||++|++||..|+++|++|+|+||....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 194
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.63 E-value=7.1e-07 Score=97.17 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC--cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG--~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++++. +.+.+| +++.+|.||+++|....
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCccc
Confidence 56778888999999999999999999988777765 666667 47999999999997654
No 195
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.63 E-value=8.2e-07 Score=95.96 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+||+|||||++|+++|..|+++|++|+|+||..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 356999999999999999999999999999999975
No 196
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.62 E-value=8.5e-07 Score=97.02 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCc
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (579)
+||+|||+|++|+++|..|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988886
No 197
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.61 E-value=6.2e-07 Score=98.98 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 388 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
+.+.+.+.+++.|++++++++|++|..+++... |.+.+|+++.+|.||+|+|..
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~-V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLIE-VELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEE-EEECCCCEEEcCEEEECCCCC
Confidence 444556677888999999999999988765544 777888889999999999974
No 198
>PLN02985 squalene monooxygenase
Probab=98.61 E-value=1.4e-06 Score=95.69 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEe--CCCcE--EEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGRE--FYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~--~dG~~--i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+.+.|.+.+.+. |++++.+ +|+++..+++.+.+|++ .+|++ +.||.||.|-|.+..+.+.+..
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~ 216 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLND 216 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhcc
Confidence 6777888887776 6888755 58888777777777775 36654 5699999999999988777653
No 199
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=7.1e-07 Score=97.33 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=38.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
.+|||+|||||++|+++|..|++.|.+|+|+|+.+.+||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 469999999999999999999999999999999888899764
No 200
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.60 E-value=6.7e-07 Score=96.91 Aligned_cols=40 Identities=45% Similarity=0.655 Sum_probs=37.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 59999999999999999999999999999999 47899775
No 201
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=6.4e-07 Score=97.80 Aligned_cols=41 Identities=37% Similarity=0.594 Sum_probs=38.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
..|||+|||||++|+++|..|++.|.+|+|+|+. .+||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 4699999999999999999999999999999995 7899876
No 202
>PRK06996 hypothetical protein; Provisional
Probab=98.60 E-value=1.4e-06 Score=92.99 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC---cEEEcCEEEECCCh-hHHHhhccC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATR-WDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG---~~i~Ad~VV~a~~~-~~~~~~Ll~ 450 (579)
.+.+.|.+.+++.|++++.+++|++|..+++.++ |.+.+| ++++||.||-|-|. .....+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 6778888999999999999999999987777765 666654 57999999998884 333334443
No 203
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.60 E-value=2.7e-07 Score=94.24 Aligned_cols=65 Identities=29% Similarity=0.358 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEe--CCEEEEEEeC--CCc----EEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILE--QGKAVGVRLS--DGR----EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~--~~~v~gV~~~--dG~----~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.....+...+.++ |.+|++++.|++|..+ ++++++|++. ++. ++.++.||+|+|+..+..-|+..
T Consensus 193 s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S 266 (296)
T PF00732_consen 193 SAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS 266 (296)
T ss_dssp HHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred ehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence 3334443344444 8999999999999876 7889999874 333 46789999999999886555544
No 204
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.59 E-value=4.8e-07 Score=99.72 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 388 l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+.+.+.+.+++.|++++++++|++|..+++... |.+.+|+.+.+|.+|+|+|...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~-v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGLIV-VTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 344555667778999999999999987665543 7778888899999999999753
No 205
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.59 E-value=9.3e-07 Score=98.60 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCc-eEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhcc
Q 008069 387 GIAKSLAKGLADKGS-EILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~-~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll 449 (579)
.|.+.|.+.+ |. .++.+++|++|..++++++ |++++|+++++|.||.|-|.+....+.+
T Consensus 195 ~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAV---GEDVIRNESNVVDFEDSGDKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 5556665544 33 3678999999998888887 8889998899999999999998765554
No 206
>PRK11445 putative oxidoreductase; Provisional
Probab=98.58 E-value=1.5e-06 Score=91.24 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHcCceEEeCceeeEEEEeCCEEEEEEe-CCCc--EEEcCEEEECCChhHHHhhccCC
Q 008069 397 ADKGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 397 ~~~G~~I~l~~~V~~I~~~~~~v~gV~~-~dG~--~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.+.|++++.++.|++|..+++.+. |.+ .+|+ +++||.||.|.|....+.+.+..
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~ 165 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYH-VIFRADGWEQHITARYLVGADGANSMVRRHLYP 165 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHhcC
Confidence 356899999999999988777655 554 5665 68999999999998877666543
No 207
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.58 E-value=2.7e-06 Score=94.96 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeC---CEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQ---GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~---~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
.+...+.+.+.+.+++|+.++.|+++..++ +++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 444455556677778999999999999865 68999875 3564 478999999999975
No 208
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.55 E-value=8.5e-07 Score=97.21 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEe-CCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+...|.+.+++. |++++ ...|+++..+ ++++.+|.+.+|..+.||.||+|+|.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4566777788887 56665 5578888776 7789999999998999999999999984
No 209
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=2.8e-07 Score=100.47 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC--CCc--EEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~--dG~--~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|++|+++++|++|..+++.+. +.+. +|+ ++.+|.||+++|....
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVT-VTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEE-EEEEecCCCeEEEEeCEEEECcCcccC
Confidence 46778888999999999999999999986655543 4443 663 6999999999997654
No 210
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.54 E-value=4.3e-06 Score=88.45 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=52.0
Q ss_pred CccEEEECCChhHHHHHHHHHHc----CCcEEEEecCCCCCcceeEEe--eCCeeeccccccccCCCCCCChHHHHHHHH
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~ 230 (579)
..++-|||+|+|+|++|.+|.|. |-+|+|||+.+.+||.+.... ..||.+..|-..- .....++++|.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~------~~~eclwdLls 75 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME------FHYECLWDLLS 75 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc------chhHHHHHHHH
Confidence 36788999999999999999985 568999999999999887554 3577665443221 23345667766
Q ss_pred Hc
Q 008069 231 AV 232 (579)
Q Consensus 231 ~~ 232 (579)
.+
T Consensus 76 ~I 77 (500)
T PF06100_consen 76 SI 77 (500)
T ss_pred hC
Confidence 54
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.51 E-value=2.2e-06 Score=91.86 Aligned_cols=59 Identities=31% Similarity=0.339 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCc--EEEcCEEEECCChhHHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRWDTF 445 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~--~i~Ad~VV~a~~~~~~~ 445 (579)
..+.+.+.+.+++.|++++++++|++++..++. ..|.+++|+ ++++|.|++|+|.....
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 688899999999988999999999999987776 447888876 68999999999976544
No 212
>PLN02507 glutathione reductase
Probab=98.49 E-value=8.1e-07 Score=97.45 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++++. |.+.+|+++.+|.||+++|....
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~-v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIK-VITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEE-EEECCCcEEEcCEEEEeecCCCC
Confidence 46777788889999999999999999987666554 66778888999999999986543
No 213
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=1.6e-06 Score=94.53 Aligned_cols=41 Identities=46% Similarity=0.647 Sum_probs=37.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
..|||+|||||++|++||..|++.|++|+|+||.. +||.|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 46999999999999999999999999999999977 888765
No 214
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.49 E-value=1.8e-06 Score=87.24 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeCC--CcE--EEcCEEEECCChhHHHhhccCCCCCChHHHHH
Q 008069 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD--GRE--FYAKTIISNATRWDTFGKLLKGEQLPKEEENF 461 (579)
Q Consensus 387 ~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~d--G~~--i~Ad~VV~a~~~~~~~~~Ll~~~~lp~~~~~~ 461 (579)
++++.|.+.+.+. ++++.-+ .|.++..+++.++||++++ |++ ..|..-|+|-|-+..+++-|-+++.+.
T Consensus 148 RFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~----- 221 (509)
T KOG1298|consen 148 RFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE----- 221 (509)
T ss_pred HHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccc-----
Confidence 7777777766554 5666544 4889988889999998854 444 456677777888877655554433331
Q ss_pred HHhhccCCCeEEEEEeecCCcCCCCCCccceeecc
Q 008069 462 QKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLED 496 (579)
Q Consensus 462 ~~~~~~~~s~~~v~lg~~~~~~~~~~~~~~~~~~~ 496 (579)
-+|.++=++-.+.+...| ++.|+++++
T Consensus 222 ------V~S~fVG~vl~N~~l~~p--~hghvIL~~ 248 (509)
T KOG1298|consen 222 ------VPSYFVGLVLKNCRLPAP--NHGHVILSK 248 (509)
T ss_pred ------cchheeeeeecCCCCCCC--CcceEEecC
Confidence 234544444445554333 345677653
No 215
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.47 E-value=2.3e-06 Score=96.45 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCc--eEEeCceeeEEEEeCC---EEEEEEeC------CC--cEEEcCEEEECCChhHHHhhccC
Q 008069 387 GIAKSLAKGLADKGS--EILYKANVTKVILEQG---KAVGVRLS------DG--REFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~--~I~l~~~V~~I~~~~~---~v~gV~~~------dG--~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
.+-+.|.+.+.+.|+ +++.+++|+++..++. .|+ |++. +| ++++||.||-|=|...+..+.++
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 466778888888775 7789999999987642 243 5553 35 47999999999999999888875
No 216
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.47 E-value=4.3e-06 Score=83.04 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcE--EEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE--FYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~--i~Ad~VV~a~~~~~ 443 (579)
++-+.|.+.+++.|+.+..+-+|.+....+++|+.|-+.++.. ++||.+|+|+|...
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence 6788999999999999999999999999999999998877753 78999999999653
No 217
>PRK09897 hypothetical protein; Provisional
Probab=98.47 E-value=3.4e-06 Score=92.48 Aligned_cols=54 Identities=6% Similarity=-0.021 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcC--ceEEeCceeeEEEEeCCEEEEEEeCC-CcEEEcCEEEECCCh
Q 008069 387 GIAKSLAKGLADKG--SEILYKANVTKVILEQGKAVGVRLSD-GREFYAKTIISNATR 441 (579)
Q Consensus 387 ~l~~aL~~~l~~~G--~~I~l~~~V~~I~~~~~~v~gV~~~d-G~~i~Ad~VV~a~~~ 441 (579)
...+.+.+.+++.| ++++.+++|++|..+++++. |.+.+ |..+.+|.||+|+|-
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEE-EEECCCCeEEEcCEEEECCCC
Confidence 44555667777777 68888999999998887765 66655 467999999999995
No 218
>PTZ00367 squalene epoxidase; Provisional
Probab=98.43 E-value=3.9e-06 Score=92.93 Aligned_cols=35 Identities=43% Similarity=0.736 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+||+|||||++|+++|..|+++|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46999999999999999999999999999999965
No 219
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.41 E-value=4.8e-06 Score=88.10 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+-+.+.+.+. .++.+++++.|++|..+++.+. |++++|++++|+.||-|.|+..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~-v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVL-VVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEE-EEECCCCEEEeeEEEECCCccc
Confidence 56667777787 5667889999999998877544 7889999999999999988543
No 220
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.2e-06 Score=83.14 Aligned_cols=245 Identities=19% Similarity=0.212 Sum_probs=133.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeC--------------------Ceeecccccccc
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD--------------------GYTFDVGSSVMF 214 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~--------------------g~~~~~G~~~~~ 214 (579)
...|||+|+|.|+.-...+..|+.+|.+|+.+|+++.-|+...+.+.. .+.+|+-+-.++
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~ 83 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF 83 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc
Confidence 347999999999999999999999999999999999999977765411 122333333332
Q ss_pred CCCCCCChHHHHHHHHHcCCceeEeeCCCeEEEEcCCCceEEecCCHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Q 008069 215 GFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSD-FVAELTSKFPHEKEGVLAFYGECWKIFNAL 293 (579)
Q Consensus 215 g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~p~~~~~i~~f~~~~~~~~~~~ 293 (579)
. ...+.++|.+.|+.--+....-.-.+.+.+|..+.++..... +...+... ..+..+.+|++++....+.
T Consensus 84 A------~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL--~eKr~vmrFl~~V~n~~~~- 154 (434)
T COG5044 84 A------NSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSL--FEKRRVMRFLKWVSNYAEQ- 154 (434)
T ss_pred c------cchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcch--hhHHHHHHHHHHHHhHHhh-
Confidence 1 123456666666431111111112233344455555554332 21111111 1445566777664333221
Q ss_pred hhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhcC-CHHHHHHHhh-hhhhhhcCCCCCchHHHHHHH--
Q 008069 294 NSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIK-DPQLLSFIDA-ECFIVSTINALQTPMINASMV-- 369 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~-- 369 (579)
....+.+ +..+.+.+.+.+-+. ......++.. .+..+ ..+.|...+...
T Consensus 155 -~~~~~~~----------------------~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l----dl~~p~re~~erIl 207 (434)
T COG5044 155 -KSTLQEL----------------------YESKDTMEFLFEKFGLSGATEEFIGHGIALSL----DLDIPAREALERIL 207 (434)
T ss_pred -hhhchhh----------------------hhcccHHHHHHHHHccCcchhhhhhhhhhhhc----cccCCchHHHHHHH
Confidence 1111111 111223333333222 1222222221 11111 123333222111
Q ss_pred -----HhhhhcCccceeCCChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEE
Q 008069 370 -----LCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIIS 437 (579)
Q Consensus 370 -----~~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~ 437 (579)
+.........||.-|.+.+++.+++...-.|+++.+|+++.+|...+. |.+|. .++.+..|..||.
T Consensus 208 ~Y~~Sf~~yg~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~-~~~~~~ka~KiI~ 278 (434)
T COG5044 208 RYMRSFGDYGKSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVD-KGSLTQKAGKIIS 278 (434)
T ss_pred HHHHhhcccCCCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc-eeeee-cCcceeecCcccC
Confidence 111111235689999999999999998888999999999999987665 44454 3455788998886
No 221
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.1e-06 Score=85.41 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+.+.+.+.++..|+++.. ..|.++...++ ...|.+.+|+ ++++.||+|+|...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcc
Confidence 3444555666677888876 77888876655 4458888887 99999999999765
No 222
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=2.6e-06 Score=93.05 Aligned_cols=42 Identities=38% Similarity=0.581 Sum_probs=36.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEec------CCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK------YVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~------~~~~gg~~~ 197 (579)
..||++|||||++|++||.++++.|.+|+|+|+ ...+||.|.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 369999999999999999999999999999998 245566553
No 223
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.37 E-value=1.2e-05 Score=94.21 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHc----CceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADK----GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~----G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+.+. ++++..++.+.++..+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 45666666666654 5677777777888888889998874 3565 478999999999864
No 224
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.35 E-value=5.3e-06 Score=84.62 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCC------C---------cEEEcCEEEECCChh
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSD------G---------REFYAKTIISNATRW 442 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~d------G---------~~i~Ad~VV~a~~~~ 442 (579)
...++..|.+.+++.|++|+-+..+.++.++ ++.|.||.+.| | -++.|+.-|.|-|-.
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 4688999999999999999999999999985 67788988754 2 257888888887754
No 225
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.32 E-value=5.5e-06 Score=81.93 Aligned_cols=39 Identities=41% Similarity=0.596 Sum_probs=36.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
-|+|||+|.+||+++..+...|-.|+++|+....||.+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999998888999999999999764
No 226
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.32 E-value=4.5e-06 Score=87.40 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeC---CC--cEEEcCEEEECCChhHHHhhccCCCCCCh
Q 008069 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWDTFGKLLKGEQLPK 456 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~---dG--~~i~Ad~VV~a~~~~~~~~~Ll~~~~lp~ 456 (579)
++.|+..|.+.+++. |++++++++|+.|.+.+++.+.|.+. +| ++++|+.|++.+|...+ .|+....+|.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqksgi~e 255 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQKSGIPE 255 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH--HHHHHcCChh
Confidence 479999999999999 99999999999999976653346542 23 47999999999999875 3555444553
No 227
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.31 E-value=4.9e-06 Score=87.24 Aligned_cols=53 Identities=32% Similarity=0.407 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCc-EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~-~i~Ad~VV~a~~~~~ 443 (579)
.++.+...+.|+++|++|++++.|++|..+ +|.+.+|+ +|.++.||+|+|...
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC-----cEEEccCCeeEecCEEEEcCCCcC
Confidence 477888889999999999999999999643 46678887 499999999999653
No 228
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.31 E-value=3.5e-06 Score=82.18 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcC-ceEEeCceeeEEEEeCCEEEEEEeC---C-CcEEEcCEEEECCChhHHHhhccCC
Q 008069 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLS---D-GREFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 387 ~l~~aL~~~l~~~G-~~I~l~~~V~~I~~~~~~v~gV~~~---d-G~~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
.++..+...+++.| +++.++. |.++..+.+++.+|-.+ + +....++.+|+++|||. .+|++.
T Consensus 148 lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~ 214 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFGK-VKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEee-eEEeecccccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence 67778888888876 8888876 88987666777766554 2 33467789999999998 467764
No 229
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.30 E-value=8.5e-06 Score=75.04 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCceEE-eCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCCh
Q 008069 388 IAKSLAKGLADKGSEIL-YKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (579)
Q Consensus 388 l~~aL~~~l~~~G~~I~-l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~ 441 (579)
..+.+.+.+ ..|++|. .+.+|+.|...+++. .|.+++|..+.+|.||+|+|-
T Consensus 103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 103 RFDRLLARL-PAGITVRHVRAEVVDIRRDDDGY-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcE-EEEECCCCEEEeCEEEECCCC
Confidence 334444455 4566653 578999999988775 478899999999999999983
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.29 E-value=1.8e-06 Score=94.42 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC---cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG---~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|++|++++.+++|...++.+. |++.+| +++.+|.||+++|....
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVK-VTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEecCCcceEEEeCEEEEEecCCcC
Confidence 46777888899999999999999999986655543 656555 37999999999997654
No 231
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.28 E-value=7.2e-06 Score=85.08 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=60.0
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
++++.+.+|. ..++..|++.++++|++++.+++|++|..+++++.+|.+.+| ++.||.||+|+|+|..
T Consensus 124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 4666777774 789999999999999999999999999998888888988777 7999999999999874
No 232
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.26 E-value=1.1e-05 Score=83.96 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
...++..+.+.+++.|++|+++++|+.|...++.+.+|.+++|+++.+|.||+|.|..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 4578899999999999999999999999999998889999999999999999999854
No 233
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.23 E-value=1.3e-05 Score=81.20 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CC--cEEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG--~~i~Ad~VV~a~~~~~ 443 (579)
..+..++.+.|++.|.+++++++|..+..++++...|++. +| +++++|.+.+++|...
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 5888999999999999999999999999887633335543 23 3699999999999654
No 234
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.22 E-value=1.4e-05 Score=86.42 Aligned_cols=57 Identities=28% Similarity=0.452 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
..+-+.|.+.++++|++++.++ |+++..+ ++.+.+|++++|++++||.||=|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4677788899999999998875 7777765 5678899999999999999999999754
No 235
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.20 E-value=3.1e-06 Score=88.99 Aligned_cols=101 Identities=23% Similarity=0.424 Sum_probs=64.0
Q ss_pred CccceeCCCh--HHHHHHHHHHHHHcCceEEeCceeeEEEEeC-CEEEEEEeCC---Cc--EEEcCEEEECCChhHH-Hh
Q 008069 376 GGINYPVGGV--GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSD---GR--EFYAKTIISNATRWDT-FG 446 (579)
Q Consensus 376 ~g~~~p~gG~--~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~-~~v~gV~~~d---G~--~i~Ad~VV~a~~~~~~-~~ 446 (579)
+..-|-+|-. .++.-+++=.+..+|+.+....+|.++..++ +++.|++..| |+ +|+|+.||.|+||..- +.
T Consensus 212 Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr 291 (680)
T KOG0042|consen 212 GAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIR 291 (680)
T ss_pred eEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHH
Confidence 3344444443 5677777777778899999889999998764 4577777644 54 4889999999999864 33
Q ss_pred hccCCCCCChHHHHHHHhhccCCCeEEEEEeecCCcCCCCC
Q 008069 447 KLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDT 487 (579)
Q Consensus 447 ~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~lg~~~~~~~~~~ 487 (579)
+| .++..++ .+ .+|. .+|+.+.+-+-|+++
T Consensus 292 ~M-dd~~~~~-------i~--~pSs-GvHIVlP~yY~P~~m 321 (680)
T KOG0042|consen 292 KM-DDEDAKP-------IC--VPSS-GVHIVLPGYYCPENM 321 (680)
T ss_pred hh-cccccCc-------ee--ccCC-ceeEEcccccCCccc
Confidence 33 3221111 11 2333 567777766555443
No 236
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.19 E-value=5.4e-05 Score=83.99 Aligned_cols=53 Identities=28% Similarity=0.284 Sum_probs=42.3
Q ss_pred HcCceEEeCceeeEEEEeCCEEEEEEeCCC-c---EEEcCEEEECCChhHHHhhccC
Q 008069 398 DKGSEILYKANVTKVILEQGKAVGVRLSDG-R---EFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 398 ~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG-~---~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
+.|.+|++++.|++|..++++++||++.++ + .+.++.||+|+|+..+..-|+-
T Consensus 206 r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~ 262 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL 262 (532)
T ss_pred CCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh
Confidence 457999999999999999899999987543 2 2578999999999776544443
No 237
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.16 E-value=1.5e-05 Score=84.57 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=57.5
Q ss_pred CccceeCCCh---HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG~---~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
++.+++.+|. ..++.+|.+.+++ |++|+.+++|++|..+++++ .|++.+|+++.||.||+|+|+|..
T Consensus 122 gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~-~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 122 GGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGW-QLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence 4667777774 7899999999999 99999999999999877764 488888887999999999999873
No 238
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.16 E-value=3.8e-06 Score=91.01 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=39.1
Q ss_pred CCccEEEECCChhHHHHHHHHHH--cCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAV--KGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~--~g~~v~~~e~~~~~gg~~~ 197 (579)
...+|+|||||++||+||..|++ .|++|+||||.+.+||...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 45789999999999999999997 7999999999999999877
No 239
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.16 E-value=2.5e-05 Score=85.15 Aligned_cols=39 Identities=38% Similarity=0.480 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
.||+|||||++|+.+|..+++.|.+|+|+||.. .||.|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence 589999999999999999999999999999975 788765
No 240
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.14 E-value=4.3e-05 Score=76.33 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHHH----cCCcEEEEecCCCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAV----KGARVLVLEKYVIP 192 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~----~g~~v~~~e~~~~~ 192 (579)
.+.||+|||||..|++.|+.|.+ .|.+|+|+||++.-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 46899999999999999999975 47999999998754
No 241
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.12 E-value=4.8e-05 Score=78.43 Aligned_cols=38 Identities=39% Similarity=0.596 Sum_probs=34.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCc
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (579)
+.+|+|||||++||++|..|.|+|++|+|+|+...+-|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 46899999999999999999999999999999665533
No 242
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.11 E-value=5.9e-06 Score=91.33 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHc-CceEEeCceeeEEEEeCCEEEEEEeC--CC---c-EEEcCEEEECCChhHHHhhccC
Q 008069 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS--DG---R-EFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 388 l~~aL~~~l~~~-G~~I~l~~~V~~I~~~~~~v~gV~~~--dG---~-~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
...++...+.++ +.+|++++.|++|..+++++++|++. ++ + ...++.||+++|...+...|+-
T Consensus 204 a~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~ 273 (542)
T COG2303 204 AARAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL 273 (542)
T ss_pred chhhcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence 334444444444 58999999999999999999988874 23 2 2567899999998877544443
No 243
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.10 E-value=4.2e-05 Score=76.17 Aligned_cols=47 Identities=43% Similarity=0.614 Sum_probs=38.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC--CCCcceeEEeeCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSSGYYERDG 203 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~~t~~~~g 203 (579)
.++||+|||+|.+||.+|..|+.+|.+|+|+|... .+||..- +...|
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf-WSfGG 52 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF-WSFGG 52 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee-eeccc
Confidence 36899999999999999999999999999999854 4577544 44444
No 244
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.09 E-value=5.7e-05 Score=83.33 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=38.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
..++||+|||||.|||.||..++..|.+|+|+||....+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 4569999999999999999999999999999999988886543
No 245
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=4.2e-06 Score=91.20 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=38.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
+|||+|||||++|++||..+++.|++|+|+|+.+.+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 49999999999999999999999999999998788999764
No 246
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.02 E-value=5.2e-06 Score=90.02 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC-cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG-~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|+++++++.|++|..+++....|.+++| +++.+|.||+++|....
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 467788889999999999999999999865443234677778 56999999999997654
No 247
>PRK14694 putative mercuric reductase; Provisional
Probab=98.01 E-value=6.5e-06 Score=89.77 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++.+. +.+.++ ++.+|.||+++|....
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~-v~~~~~-~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI-LETNAG-TLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEECCC-EEEeCEEEEccCCCCC
Confidence 56788899999999999999999999987665443 555544 6999999999997654
No 248
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.00 E-value=6e-06 Score=89.30 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|++++++++|++|..+++++. +. .+|+++.+|.||+++|....
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~-v~-~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVL-VV-TEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEE-EE-ECCeEEEcCEEEEeeCCCCC
Confidence 45666777889999999999999999987665543 43 45678999999999987643
No 249
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.98 E-value=5.6e-05 Score=83.54 Aligned_cols=69 Identities=25% Similarity=0.428 Sum_probs=56.2
Q ss_pred CccceeCCC--hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CCc--EEEcCEEEECCChhHH
Q 008069 376 GGINYPVGG--VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 376 ~g~~~p~gG--~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG~--~i~Ad~VV~a~~~~~~ 444 (579)
++++++.|- ...++.++++.++++|++|+++++|++|..+++++.+|++. +|+ +++|+.||+|+|+|..
T Consensus 116 ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 116 GAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred EEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 345566321 26889999999999999999999999999988988888763 343 6899999999999974
No 250
>PRK06370 mercuric reductase; Validated
Probab=97.98 E-value=7.2e-06 Score=89.35 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEE-EEEeC-CCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAV-GVRLS-DGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~-gV~~~-dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++.+. .+... ++.++.+|.||+++|....
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 45677888889999999999999999987655432 22222 3457999999999996543
No 251
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.98 E-value=7.6e-05 Score=78.65 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHH-cCceEEeCceeeEEEEeCC-EEEEEEeCCC----cEEEcCEEEECCChh
Q 008069 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQG-KAVGVRLSDG----REFYAKTIISNATRW 442 (579)
Q Consensus 386 ~~l~~aL~~~l~~-~G~~I~l~~~V~~I~~~~~-~v~gV~~~dG----~~i~Ad~VV~a~~~~ 442 (579)
..+..+|.+.+++ .+++|+.++.+.+|..+++ .+.||.+.+. .++.|+.||+|+|..
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 4678889988887 4899999999999999988 5558877433 358899999999964
No 252
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.97 E-value=7.4e-06 Score=88.70 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|++++++++|++|..+++.+. |...+| ++.+|.||+++|....
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~-v~~~~g-~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQ-VHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEEcCC-eEEeCEEEEeecCCcC
Confidence 46778888999999999999999999987666553 555555 5899999999987653
No 253
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.97 E-value=3.9e-05 Score=88.55 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
..|.+.|.+.+++.|++|+++++|+++.. ....+|.||.|.|.+....+.++
T Consensus 97 ~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~~~~~D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 97 KRLLNILQARCEELGVKLVFETEVPDDQA-------------LAADADLVIASDGLNSRIRTRYA 148 (765)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccCchhh-------------hhcCCCEEEEcCCCCHHHHHHHH
Confidence 57888999999999999999999887631 01478999999999887766554
No 254
>PLN02785 Protein HOTHEAD
Probab=97.95 E-value=3.9e-05 Score=85.54 Aligned_cols=74 Identities=24% Similarity=0.252 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHHcCceEEeCceeeEEEEeC----CEEEEEEeC--CCcEE-------EcCEEEECCChhHHHhhcc
Q 008069 383 GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRLS--DGREF-------YAKTIISNATRWDTFGKLL 449 (579)
Q Consensus 383 gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~----~~v~gV~~~--dG~~i-------~Ad~VV~a~~~~~~~~~Ll 449 (579)
.|...-+..+.......+.+|++++.|++|..++ ++++||++. +|++. .++.||+++|...+...|+
T Consensus 217 ~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~ 296 (587)
T PLN02785 217 FGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296 (587)
T ss_pred CCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHH
Confidence 3433333334444455679999999999999875 279999884 46532 2478999999887754444
Q ss_pred CCCCCCh
Q 008069 450 KGEQLPK 456 (579)
Q Consensus 450 ~~~~lp~ 456 (579)
-...-|+
T Consensus 297 ~SGIGp~ 303 (587)
T PLN02785 297 LSGIGPK 303 (587)
T ss_pred HcCCCCH
Confidence 3323343
No 255
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=9.4e-06 Score=86.73 Aligned_cols=42 Identities=38% Similarity=0.450 Sum_probs=39.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
...+|+|||||++||++|..|.+.|++|+||||.+.+||.=.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 358999999999999999999999999999999999999643
No 256
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.93 E-value=1.4e-05 Score=86.31 Aligned_cols=85 Identities=26% Similarity=0.346 Sum_probs=58.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCc-EEEEecCCCCCcceeEEeeCCeeecccccccc----------CCCCCC-Ch
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYVIPGGSSGYYERDGYTFDVGSSVMF----------GFSDKG-NL 222 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~----------g~~~~~-~~ 222 (579)
...+||+|||||++||++|++|.++|.. ++||||++.+||.=.....++...+...+.+. .+.+.. ..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4579999999999999999999999998 99999999999974433445544443221110 011111 23
Q ss_pred HHHHHHHHHcCCceeEe
Q 008069 223 NLITQALAAVGCEMEVI 239 (579)
Q Consensus 223 ~~~~~~l~~~g~~~~~~ 239 (579)
..+...+++.++..++.
T Consensus 86 ~y~~~~~~~y~~~~~i~ 102 (443)
T COG2072 86 DYIKDYLEKYGLRFQIR 102 (443)
T ss_pred HHHHHHHHHcCceeEEE
Confidence 45667778888766543
No 257
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.92 E-value=1.2e-05 Score=89.59 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=37.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
..|||+|||||++||+||..|++.|++|+|+|+. ..||.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 3599999999999999999999999999999995 6788654
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.88 E-value=1.4e-05 Score=83.34 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=40.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeE
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY 198 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t 198 (579)
...+++|||||++|++||..|++.|++|.++||++.+||+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 4578999999999999999999999999999999999998654
No 259
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=1.4e-05 Score=86.92 Aligned_cols=40 Identities=45% Similarity=0.625 Sum_probs=37.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
.|||+|||||++|+++|..|++.|.+|+|+|+ ..+||.+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 59999999999999999999999999999999 67888765
No 260
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.86 E-value=1.5e-05 Score=86.97 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC---CCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~---dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+...+.+.+++.|++++++++|++|..+++.+. |.+. +++++.+|.||+++|....
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKI-ITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEE-EEEEeCCCceEEEeCEEEEeECCCcC
Confidence 45677888889999999999999999987655433 4442 2357999999999996543
No 261
>PTZ00058 glutathione reductase; Provisional
Probab=97.86 E-value=1.7e-05 Score=87.93 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCC-EEEEEEeCCC-cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRLSDG-REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~-~v~gV~~~dG-~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|+++++++.|++|..+++ ++. +...++ +++.+|.||+++|....
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCC
Confidence 46778888999999999999999999986543 343 344444 47999999999997654
No 262
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.82 E-value=2.5e-05 Score=83.64 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=39.7
Q ss_pred CCccEEEECCChhHHHHHHHHH-HcCCcEEEEecCCCCCcceeEEeeC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYVIPGGSSGYYERD 202 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~-~~g~~v~~~e~~~~~gg~~~t~~~~ 202 (579)
...+|+|||||++||.||.+|. +.|++|+||||.+.+||..+ +.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR-~GVa 84 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR-YGVA 84 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE-EeCC
Confidence 4578999999999999999765 67999999999999999987 4443
No 263
>PRK10262 thioredoxin reductase; Provisional
Probab=97.82 E-value=2.4e-05 Score=80.92 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC------cEEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG------REFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG------~~i~Ad~VV~a~~~~~ 443 (579)
.+.+.+.+.+++.|+++++++.|++|..+++++.+|++.++ +++.+|.||+++|...
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 45677788889999999999999999866556666766432 3699999999998654
No 264
>PRK13748 putative mercuric reductase; Provisional
Probab=97.82 E-value=1.8e-05 Score=88.34 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+...+.+.+++.|++|+++++|++|..+++.+. +.+.++ ++.+|.||+++|....
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~-v~~~~~-~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFV-LTTGHG-ELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEE-EEecCC-eEEeCEEEEccCCCcC
Confidence 56778888999999999999999999987666544 555555 6999999999997654
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=2.3e-05 Score=83.14 Aligned_cols=52 Identities=29% Similarity=0.591 Sum_probs=38.9
Q ss_pred HHHHHHHHHc-CceEEeCceeeEEEEeCC-EEEEEEeCCCcEEEcCEEEECCChh
Q 008069 390 KSLAKGLADK-GSEILYKANVTKVILEQG-KAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 390 ~aL~~~l~~~-G~~I~l~~~V~~I~~~~~-~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
..+.+.++.. +..++ ...|++|..+++ +|.||.+.+|..+.|+.||+|+|-+
T Consensus 104 ~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 104 RAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 3444555544 34444 455888888666 6999999999999999999999965
No 266
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.78 E-value=0.00015 Score=78.58 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHcCceEEeCceeeEEEEeCCEEEEEEe-CCCcEEE--cCEEEECCChhH
Q 008069 396 LADKGSEILYKANVTKVILEQGKAVGVRL-SDGREFY--AKTIISNATRWD 443 (579)
Q Consensus 396 l~~~G~~I~l~~~V~~I~~~~~~v~gV~~-~dG~~i~--Ad~VV~a~~~~~ 443 (579)
+++.|+++++++.|++|..+++.+. +.. .+|++++ +|.+|+|+|...
T Consensus 66 ~~~~gv~~~~~~~V~~id~~~~~v~-~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 66 FIKSGIDVKTEHEVVKVDAKNKTIT-VKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHCCCeEEecCEEEEEECCCCEEE-EEECCCCCEEEecCCEEEECCCCCC
Confidence 4567899999999999988776654 332 2356666 999999999764
No 267
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.78 E-value=0.00014 Score=78.23 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
..+.+.+.+.++++|++++++++|++|.. + .|.+++|+++.+|.||+++|..
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~---~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K---EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C---EEEECCCCEEEccEEEEccCCC
Confidence 46778888999999999999999999853 3 3668899999999999998853
No 268
>PRK14727 putative mercuric reductase; Provisional
Probab=97.77 E-value=3e-05 Score=84.78 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++.+. |.+.++ ++.+|.||+++|....
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~-v~~~~g-~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV-LTTGHG-ELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEE-EEEcCC-eEEeCEEEEccCCCCC
Confidence 46778888999999999999999999987666543 555555 5899999999998764
No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.76 E-value=0.00033 Score=74.78 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 393 ~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.+.++++|++++++++|++|.. ++.+ .|.+.+|+++.+|.||+++|....
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~~~~-~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-GEKV-ELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-CCEE-EEEECCCCEEECCEEEECCCCChh
Confidence 3445778999999999999975 4444 477889999999999999997643
No 270
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.76 E-value=0.0004 Score=68.91 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCE----EEEEEeCCCcEEEcCEEEECCChhH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGK----AVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~----v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+..+...+.+.++..|+++.+|-+|+.|...+.. -+.|.-..|++++.+.||-+++...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4678888999999999999999999999865431 1123334467899999999888764
No 271
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.74 E-value=3.2e-05 Score=85.00 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|+++++++.|++|...++.+. |.+.+|+++.+|.||+++|....
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~-v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIK-VLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEE-EEECCCCEEEcCEEEEeeCCCCC
Confidence 45678888999999999999999999986555543 67778888999999999997654
No 272
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.71 E-value=3.7e-05 Score=84.00 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|+++++++.|++|..+++....|.+.+|+++.+|.||+++|....
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 57788899999999999999999999987644444467778888999999999996543
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.71 E-value=0.00043 Score=73.31 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=41.0
Q ss_pred HHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 393 ~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+.+++.|++++++++|++|..+++.+ .|.+.+|+++.+|.||+++|...
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDSGI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCCEE-EEEEcCCcEEECCEEEECcCCCc
Confidence 345677899999999999998766554 47788999999999999999654
No 274
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.69 E-value=3.7e-05 Score=84.58 Aligned_cols=38 Identities=39% Similarity=0.452 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcc
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGS 195 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~ 195 (579)
++|+|||||++||++|..|.+.|++|++|||.+.+||.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~ 39 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL 39 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc
Confidence 68999999999999999999999999999999999996
No 275
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.69 E-value=8.4e-05 Score=83.62 Aligned_cols=43 Identities=30% Similarity=0.555 Sum_probs=38.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecC-CCCCccee
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY-VIPGGSSG 197 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~-~~~gg~~~ 197 (579)
..+|||+|||+|++|..+|..+++.|.+|+|+|+. ..+||.|.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 34799999999999999999999999999999974 46899775
No 276
>PLN02546 glutathione reductase
Probab=97.65 E-value=5.8e-05 Score=83.64 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.++++|+++++++.|++|..+++....|.+.+++...+|.||+++|....
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccC
Confidence 45667788889999999999999999976433333366666654558999999997654
No 277
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.60 E-value=0.00013 Score=58.92 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=45.4
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCcee
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~~ 237 (579)
+|+|||||..|+-+|..|++.|.+|+|+++.+.+..... ......+.+.+++.|+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~---------------------~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFD---------------------PDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS---------------------HHHHHHHHHHHHHTTEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcC---------------------HHHHHHHHHHHHHCCCEEE
Confidence 589999999999999999999999999999988752111 1123456778888887654
No 278
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.60 E-value=0.00015 Score=76.10 Aligned_cols=42 Identities=38% Similarity=0.462 Sum_probs=39.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
...+|+|||+|++|+++|..|++.|++|+++|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 457999999999999999999999999999999999998754
No 279
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.59 E-value=7.5e-05 Score=78.88 Aligned_cols=36 Identities=36% Similarity=0.387 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
.||+|||||++|+.+|+.|+++|++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 699999999999999999999999999999876553
No 280
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.58 E-value=7.9e-05 Score=88.33 Aligned_cols=42 Identities=38% Similarity=0.549 Sum_probs=39.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 358999999999999999999999999999999999999764
No 281
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.55 E-value=8.3e-05 Score=78.47 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCcEEEEecCCCCCcc
Q 008069 159 DAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGS 195 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~ 195 (579)
||+|||||++|+++|+.|++. |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999998877764
No 282
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.52 E-value=0.001 Score=72.55 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=39.5
Q ss_pred HHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC---cEEEcCEEEECCChhHH
Q 008069 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWDT 444 (579)
Q Consensus 394 ~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG---~~i~Ad~VV~a~~~~~~ 444 (579)
+.++++|++++++++|++|..+++.+. +.+.+| +++.+|.||+++|....
T Consensus 221 ~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 221 RALKKRGIKIKTGAKAKKVEQTDDGVT-VTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 446778999999999999987766554 556555 57999999999997643
No 283
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.49 E-value=0.00075 Score=68.44 Aligned_cols=51 Identities=29% Similarity=0.502 Sum_probs=41.3
Q ss_pred CccEEEECCChhHHHHHHHHHHc----CCcEEEEecCCCCCcceeEEe--eCCeeec
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFD 207 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~~ 207 (579)
.+.+-|||+|+|||++|..|.|. |.++.++|-.+..||...... ..||...
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~R 78 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVR 78 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeec
Confidence 47789999999999999999885 678999999999999765322 3466554
No 284
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.48 E-value=0.00079 Score=70.86 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
..+...+.+.++++|++++++++|++|. ++ .|.+.+|+++.+|.||+++|...
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCCCh
Confidence 3566778888999999999999999985 33 36678898999999999999543
No 285
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.47 E-value=0.00012 Score=69.87 Aligned_cols=32 Identities=50% Similarity=0.762 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
||+|||||++|++||..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998765
No 286
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.46 E-value=0.00081 Score=71.56 Aligned_cols=52 Identities=29% Similarity=0.220 Sum_probs=41.2
Q ss_pred HHHHHHHcCceEEeCceeeEEEEeCCEEEE--EEeCCCcEEEcCEEEECCChhH
Q 008069 392 LAKGLADKGSEILYKANVTKVILEQGKAVG--VRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~~~~v~g--V~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+.+.++++|++++++..|.+|...++.... +...++..+.+|.++++.+...
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 445578889999999999999987665544 5677888899999999887543
No 287
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.44 E-value=0.0016 Score=70.79 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.+++|||||..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 68999999999999999999999999999997654
No 288
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.43 E-value=0.0015 Score=71.40 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=38.9
Q ss_pred HHHHHcCceEEeCceeeEEEE-eCCEEEEEEeCCCc--EEEcCEEEECCChhHH
Q 008069 394 KGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 394 ~~l~~~G~~I~l~~~V~~I~~-~~~~v~gV~~~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
+.+++.|++++++++|++|.. .++++..+.+.+|+ ++.+|.||+++|....
T Consensus 229 ~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 229 RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 456778999999999999976 24455545556674 6999999999997654
No 289
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.42 E-value=0.00015 Score=77.11 Aligned_cols=37 Identities=35% Similarity=0.311 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCc
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (579)
.||+|||||++|+.+|+.|++.|++|+|+|+.+..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999998776543
No 290
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.42 E-value=0.0013 Score=76.37 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=41.5
Q ss_pred HHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 393 ~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+.++++|+++++++.|++|..+ +++.+|+++||+++.+|.||+++|...
T Consensus 189 ~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 189 QRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCCCEEEcCEEEECCCCCc
Confidence 34567889999999999999753 456678899999999999999999653
No 291
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.41 E-value=0.0014 Score=76.17 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHcCceEEeCceeeEEEEeC-CEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 392 LAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~~-~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
+.+.++++|++|++++.|++|..++ +.+..|.++||+++.+|.||+++|....
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 4456788899999999999997543 3455688899999999999999996543
No 292
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0014 Score=68.46 Aligned_cols=39 Identities=41% Similarity=0.554 Sum_probs=33.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecC-CCCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY-VIPG 193 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~-~~~g 193 (579)
...|||||||||.||.-+|...+|.|.+.+++-.+ +.+|
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 35799999999999999999999999998888764 3444
No 293
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.38 E-value=0.0022 Score=69.97 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 393 ~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.+.++++|++++++++|++|..+++++. |.+.+|+++.+|.||+++|....
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTGDGVV-VTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence 3456778999999999999987666654 66778889999999999886543
No 294
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.38 E-value=0.0022 Score=69.33 Aligned_cols=36 Identities=28% Similarity=0.204 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 358999999999999999999999999999997654
No 295
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.34 E-value=0.00014 Score=72.96 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
..+.+.+.+.++..|++++.++.++++...++.-..+.+..|....+|.+++|.|...
T Consensus 230 ~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 230 EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence 4566778899999999999999999998876654445566775555999999999764
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.31 E-value=0.0013 Score=76.55 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=37.0
Q ss_pred HHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 396 l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+++.|++++++++|++|..+... |.+.+|+++.+|.+|+|+|...
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~---V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKV---IHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcE---EEECCCcEEECCEEEECCCCCc
Confidence 45679999999999999775443 5578888899999999999764
No 297
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.30 E-value=0.00024 Score=77.33 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC--cEEEcCEEEECCChhHH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWDT 444 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG--~~i~Ad~VV~a~~~~~~ 444 (579)
..+.+.+.+.+++.|++++++++|++|..+++.+. +.. +| +++.+|.||+++|....
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~-~~~-~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQAL-FEY-EGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEE-EEE-CCceEEEEeCEEEEecCCccC
Confidence 46778888999999999999999999986655433 333 44 36899999999997654
No 298
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.29 E-value=0.0033 Score=68.23 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=40.1
Q ss_pred HHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 394 ~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
+.+++.|++++++++|++|..+++.+. |.+.+|+++.+|.||+++|....
T Consensus 215 ~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 215 RNMEGRGIRIHPQTSLTSITKTDDGLK-VTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCeEE-EEEcCCcEeecCEEEEeeCCCcC
Confidence 446778999999999999987655543 66778888999999999997543
No 299
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.29 E-value=0.0063 Score=66.61 Aligned_cols=38 Identities=39% Similarity=0.530 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc-CCcEEEEecCCCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIP 192 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~-g~~v~~~e~~~~~ 192 (579)
...||.+|||||-||...|..|++. -.+|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999986 5799999996554
No 300
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.29 E-value=0.0031 Score=69.02 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHH---cCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAV---KGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~---~g~~v~~~e~~~~~ 192 (579)
..+++|||||..|+-.|..+++ .|.+|+|+|+.+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 3689999999999999976654 49999999997754
No 301
>PRK02106 choline dehydrogenase; Validated
Probab=97.28 E-value=0.00026 Score=79.08 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=43.2
Q ss_pred HcCceEEeCceeeEEEEeCCEEEEEEeCCC--c--EEEcCEEEECCChhHHHhhccCC
Q 008069 398 DKGSEILYKANVTKVILEQGKAVGVRLSDG--R--EFYAKTIISNATRWDTFGKLLKG 451 (579)
Q Consensus 398 ~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG--~--~i~Ad~VV~a~~~~~~~~~Ll~~ 451 (579)
..+.+|++++.|++|..++++++||++.++ + .+.++.||+|+|...+...|+-.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~S 270 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLS 270 (560)
T ss_pred CCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence 456999999999999999889999987443 2 36799999999998876555443
No 302
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.27 E-value=0.0031 Score=68.00 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 394 ~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+.+++.|++++++++|++|..++ .+ +.+.+|+++.+|.||+++|...
T Consensus 187 ~~l~~~gV~v~~~~~v~~i~~~~-~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 187 EELKKHEINLRLNEEVDSIEGEE-RV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHcCCEEEeCCEEEEEecCC-CE--EEEcCCCEEEeCEEEECCCccC
Confidence 44567899999999999997543 33 4567888999999999998653
No 303
>PRK06370 mercuric reductase; Validated
Probab=97.23 E-value=0.0044 Score=67.59 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 368999999999999999999999999999997754
No 304
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.23 E-value=0.0038 Score=68.33 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC--C--cEEEcCEEEECCChhHH
Q 008069 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSD--G--REFYAKTIISNATRWDT 444 (579)
Q Consensus 394 ~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d--G--~~i~Ad~VV~a~~~~~~ 444 (579)
+.+++.|++|+++++|++|..+++++. |.+.+ | +++.+|.||+++|....
T Consensus 232 ~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 232 KAFTKQGLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHcCcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEccCCccC
Confidence 345677999999999999987666554 55444 3 46999999999996643
No 305
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.21 E-value=0.0071 Score=63.53 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=51.8
Q ss_pred CccceeC-CChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC-cEEEcCEEEECCChhH
Q 008069 376 GGINYPV-GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWD 443 (579)
Q Consensus 376 ~g~~~p~-gG~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG-~~i~Ad~VV~a~~~~~ 443 (579)
+|..||. .-.+.++++|.+.+++.|++|+++++|++| ++++ ..|.+.++ ..++||.||+|+|...
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 4566774 457899999999999999999999999999 4444 34666443 4699999999999754
No 306
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.17 E-value=0.0016 Score=75.61 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 396 l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
++++|++++++++|++|..+... |.+.+|+++.+|.+|+|+|...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~k~---V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQKQ---VITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCCCE---EEECCCcEeeCCEEEECCCCCc
Confidence 45679999999999999876553 5578898899999999999764
No 307
>PRK07846 mycothione reductase; Reviewed
Probab=97.17 E-value=0.0046 Score=67.18 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=37.5
Q ss_pred HcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 398 ~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
+.|++++++++|++|..+++++. |.+.+|+++.+|.||+++|....
T Consensus 218 ~~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQDGSGVT-LRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred hcCeEEEeCCEEEEEEEcCCEEE-EEECCCcEeecCEEEEEECCccC
Confidence 35789999999999987665544 67778889999999999997654
No 308
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.16 E-value=0.0044 Score=67.57 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 68999999999999999999999999999997654
No 309
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.16 E-value=0.0043 Score=68.29 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999873
No 310
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.14 E-value=0.012 Score=65.79 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEe---CCCc--EEEcCEEEECCChhHH
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~~ 444 (579)
-..+...|.+.+++.|++|+.++.++++..+ +++|.||.. .+|+ .+.|+.||+|+|....
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 3578899999999999999999999999985 689999875 3565 4789999999998763
No 311
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0068 Score=64.25 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CC-cEEEEecCCCCCccee
Q 008069 158 YDAIVIGSGIGGLVAATQLAVK--GA-RVLVLEKYVIPGGSSG 197 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~--g~-~v~~~e~~~~~gg~~~ 197 (579)
++|+|||+|.+|+..|.+|.+. .- .|.|+|+.+..|+...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 7899999999999999999884 22 2999999998887544
No 312
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.13 E-value=0.0063 Score=66.25 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=32.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+++|||+|.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 358999999999999999999999999999997643
No 313
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.11 E-value=0.0042 Score=67.24 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=36.7
Q ss_pred HHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 393 ~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
.+.+++.|++++++++|++|. +. .|.+++|+++.+|.||+++|...
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCCc
Confidence 344677899999999999995 22 35677888899999999999654
No 314
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0065 Score=66.28 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 46899999999999999999999999999998553
No 315
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.10 E-value=0.0064 Score=65.87 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=37.9
Q ss_pred HHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
+.+.+++.|++++++++|++|.. ++++..+.+.++ ++.+|.||+++|...
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 34456778999999999999964 445555665544 799999999999753
No 316
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.08 E-value=0.0063 Score=65.90 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999986543
No 317
>PRK14694 putative mercuric reductase; Provisional
Probab=97.08 E-value=0.0068 Score=66.16 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
..+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 368999999999999999999999999999874
No 318
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0011 Score=66.66 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEe--CCEEEEEEeCCCcEEEcCEEEECCChh
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSDGREFYAKTIISNATRW 442 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~--~~~v~gV~~~dG~~i~Ad~VV~a~~~~ 442 (579)
.+..+|.++.++..+++..-.+++++... .+....|++++|..++++.||+++|+.
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 44556666666667777666677777653 344556899999999999999999964
No 319
>PRK14727 putative mercuric reductase; Provisional
Probab=97.05 E-value=0.0063 Score=66.65 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
.+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 68999999999999999999999999999874
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.04 E-value=0.0065 Score=67.95 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
..+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 368999999999999999999999999999984
No 321
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.01 E-value=0.00067 Score=73.69 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~ 444 (579)
.+...+.+. .+.|++++++++|++|..+++++. |.+.+|+++.+|.||+++|....
T Consensus 211 ~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 DISDRFTEI-AKKKWDIRLGRNVTAVEQDGDGVT-LTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHH-HhcCCEEEeCCEEEEEEEcCCeEE-EEEcCCCEEEcCEEEEeeccCcC
Confidence 445555543 356899999999999987666654 66778888999999999986543
No 322
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.01 E-value=0.0087 Score=65.04 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
..+++|||+|..|+-.|..|++.|.+|+++|+.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36899999999999999999999999999998654
No 323
>PRK07846 mycothione reductase; Reviewed
Probab=96.99 E-value=0.00068 Score=73.58 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCccee
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (579)
+||++|||||++|.++|.. +.|.+|+|+|+. .+||.|.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence 3899999999999988865 469999999985 5777665
No 324
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.98 E-value=0.00027 Score=66.13 Aligned_cols=41 Identities=34% Similarity=0.615 Sum_probs=36.4
Q ss_pred CccEEEECCChhHHHHHHHHHHc--CCcEEEEecCCCCCccee
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (579)
..||+|||+|.+||++|+..+++ ..+|.++|..-.+||...
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 47999999999999999999854 578999999999998765
No 325
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.95 E-value=0.0036 Score=65.24 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=27.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (579)
.+|+++||.||++|+.|..|...+ .++..|||.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999876 89999999764
No 326
>PTZ00058 glutathione reductase; Provisional
Probab=96.93 E-value=0.011 Score=65.67 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 468999999999999999999999999999987643
No 327
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0016 Score=66.51 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=38.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc--CCcEEEEecCCCCCccee
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (579)
..+..|.|||+||||+.+|..|.++ +..|.|+|+.+.++|..+
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 3456999999999999999988874 689999999999999987
No 328
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0018 Score=64.98 Aligned_cols=53 Identities=42% Similarity=0.607 Sum_probs=43.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEec-CCCCCcceeEEeeCCeeeccc
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK-YVIPGGSSGYYERDGYTFDVG 209 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~-~~~~gg~~~t~~~~g~~~~~G 209 (579)
+.+||.+|||||.+||+||-..+..|.+|.++|- .+.|-| ++|..+|-..++|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~G--tsWGlGGTCvNVG 70 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQG--TSWGLGGTCVNVG 70 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCC--CccccCceeeecc
Confidence 4579999999999999999999999999999997 455544 4466777666665
No 329
>PLN02546 glutathione reductase
Probab=96.78 E-value=0.015 Score=64.73 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=32.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||||..|+-.|..|++.|.+|+|+++.+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 468999999999999999999999999999987643
No 330
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.71 E-value=0.017 Score=63.12 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 6899999999999999999999999999998663
No 331
>PRK10262 thioredoxin reductase; Provisional
Probab=96.69 E-value=0.013 Score=60.57 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|||+|..|+-.|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999865
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.56 E-value=0.017 Score=63.90 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=36.1
Q ss_pred cCceEEeCceeeEEEEeCCEEEEEEeCC---C--cEEEcCEEEECCChhH
Q 008069 399 KGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWD 443 (579)
Q Consensus 399 ~G~~I~l~~~V~~I~~~~~~v~gV~~~d---G--~~i~Ad~VV~a~~~~~ 443 (579)
.|++|++++.|++|..+++++.+|++.+ | +++.+|.||+++|...
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 5899999999999987667777777653 2 3689999999998643
No 333
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.46 E-value=0.025 Score=59.81 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=48.2
Q ss_pred HHHHHHHcCceEEeCceeeEEEEe-CCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccC
Q 008069 392 LAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~-~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~ 450 (579)
+...++++|+++++++.+.++... +|+++.|.+.||+++.||.||+.+|..... +++.
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t-~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT-SFLE 319 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc-cccc
Confidence 345578889999999999999875 478999999999999999999999987643 4444
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.44 E-value=0.034 Score=60.35 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998753
No 335
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.43 E-value=0.0035 Score=66.85 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--cEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~--~v~~~e~~~~~ 192 (579)
..+|+|||||++|++||..|++.|+ +|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 3689999999999999999999887 69999997654
No 336
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.43 E-value=0.034 Score=60.55 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
..+++|||+|..|+-.|..|++.|.+|+++|+.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 36899999999999999999999999999998653
No 337
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.39 E-value=0.0038 Score=67.55 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCcEEEEecCCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPG 193 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~g 193 (579)
++|+|||||++|+++|..|++. +++|+|+|+.+..+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 4799999999999999999986 67899999987643
No 338
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.074 Score=54.99 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=43.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD 202 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~ 202 (579)
+..+||||||.|..-...|...+|.|.+|+-+|++..-||.-.+|..+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 357999999999999999999999999999999999999977766544
No 339
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.03 E-value=0.023 Score=59.58 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=73.2
Q ss_pred ccccHHHHHHHhcCCHH-HHHHHhhhhhhhhcCCCCCchHHHHHHHHhhhhcCccceeCCChHHHHHHHHHHHHHcCceE
Q 008069 325 LPQNAGNIARKYIKDPQ-LLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEI 403 (579)
Q Consensus 325 ~~~s~~~~l~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~gG~~~l~~aL~~~l~~~G~~I 403 (579)
...+..+++.+..-++. ..+++.......++-+ .+..++.++..+.. ..+|.+..+||...+++.|.+. .|+++
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~-a~~gl~sV~GGN~qI~~~ll~~---S~A~v 142 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG-ATGGLWSVEGGNWQIFEGLLEA---SGANV 142 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee-ccCCceEecCCHHHHHHHHHHH---ccCcE
Confidence 34556677766544444 4467766666555433 34566655554443 3468899999999999998765 48899
Q ss_pred EeCceeeEE-EEeCCE--EEEEEeCC--Cc-EEEcCEEEECCChhH
Q 008069 404 LYKANVTKV-ILEQGK--AVGVRLSD--GR-EFYAKTIISNATRWD 443 (579)
Q Consensus 404 ~l~~~V~~I-~~~~~~--v~gV~~~d--G~-~i~Ad~VV~a~~~~~ 443 (579)
++++|++| ...++. ...|...+ +. .-.+|.||+|+|...
T Consensus 143 -l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 143 -LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred -ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 99999999 333332 23354433 22 245799999999743
No 340
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.90 E-value=0.076 Score=57.79 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=30.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-cEEEEecC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (579)
...+|+|||+|..|+-+|..|++.|. +|+++++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 35789999999999999999999998 79998864
No 341
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.73 E-value=0.01 Score=54.49 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|+|||||..|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 342
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.51 E-value=0.054 Score=56.28 Aligned_cols=37 Identities=32% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcC-CcEEEEecCCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (579)
...+|++.||-||.-|+.|+.|...+ .++..+||.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 35699999999999999999999865 78999999774
No 343
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.44 E-value=0.38 Score=46.26 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=55.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC-------CcceeEEeeCCee--eccccccccCCCCCC-ChHHHH
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP-------GGSSGYYERDGYT--FDVGSSVMFGFSDKG-NLNLIT 226 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~-------gg~~~t~~~~g~~--~~~G~~~~~g~~~~~-~~~~~~ 226 (579)
..+|+|||||..|..-+..|.+.|.+|+|++..... -|... +....|. .-.|+..+....+.. ....+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~-~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~ 87 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGIT-WLARCFDADILEGAFLVIAATDDEELNRRVA 87 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEE-EEeCCCCHHHhCCcEEEEECCCCHHHHHHHH
Confidence 468999999999999999999999999999875432 12322 2211121 011333333222222 223456
Q ss_pred HHHHHcCCceeEeeCCCeEEEEcC
Q 008069 227 QALAAVGCEMEVIPDPTTVHFHLP 250 (579)
Q Consensus 227 ~~l~~~g~~~~~~~~~~~~~~~~~ 250 (579)
+..+..|+.+....++....|.+|
T Consensus 88 ~~a~~~~ilvn~~d~~e~~~f~~p 111 (205)
T TIGR01470 88 HAARARGVPVNVVDDPELCSFIFP 111 (205)
T ss_pred HHHHHcCCEEEECCCcccCeEEEe
Confidence 666777877765554444444443
No 344
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.26 E-value=0.019 Score=54.04 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999965
No 345
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.036 Score=55.80 Aligned_cols=37 Identities=35% Similarity=0.489 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
..-|-|||||.+|.-+||.++++|.+|.++|-.+.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 3568999999999999999999999999999876543
No 346
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.10 E-value=0.028 Score=59.49 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g--~~v~~~e~~~~ 191 (579)
+||+|||||+||+++|..|++.+ .+|+|+++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 58999999999999999998854 57999998763
No 347
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.98 E-value=0.026 Score=53.35 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=26.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
++|.|||.|..||..|..|++.|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999865
No 348
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.046 Score=52.10 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=35.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecC----CCCCcceeEE
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY----VIPGGSSGYY 199 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~----~~~gg~~~t~ 199 (579)
.-+|+|||+|+++-++|.+++|+-.+-+|||-. --+||..+|-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 458999999999999999999999999999973 2347766543
No 349
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.69 E-value=0.14 Score=57.38 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEe---CCCc--EEEcCEEEECCChhH
Q 008069 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (579)
Q Consensus 386 ~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~---~dG~--~i~Ad~VV~a~~~~~ 443 (579)
..+...|.+.+++.|++|+.++.|++|..++++|.||.. .+|+ .+.|+.||+|+|...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 578899999999999999999999999988899999875 3565 478999999999875
No 350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.68 E-value=0.057 Score=58.75 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=33.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 368999999999999999999999999999998765
No 351
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.64 E-value=1.1 Score=43.06 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
...+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3578999999999999999999999999999874
No 352
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.034 Score=60.48 Aligned_cols=34 Identities=38% Similarity=0.466 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
+|+|||.|.+|+++|..|+++|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 353
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.53 E-value=0.044 Score=60.07 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999765
No 354
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.42 E-value=0.11 Score=41.61 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCC
Q 008069 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG 427 (579)
Q Consensus 385 ~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG 427 (579)
...+...+.+.+++.|+++++++.|++|..++++++ |+++||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEEecC
Confidence 357778888999999999999999999999887777 988887
No 355
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.41 E-value=0.045 Score=56.82 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=30.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHc----CCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~----g~~v~~~e~~~ 190 (579)
..+||+|||||+.|++.|..|..+ ..+|+++|..+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 479999999999999999999864 46899999873
No 356
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.17 E-value=0.056 Score=52.85 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
++++|||+|..|.+.|..|.+.|+.|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4789999999999999999999999999999763
No 357
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.11 E-value=0.095 Score=57.07 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=33.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4689999999999999999999999999999987653
No 358
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.96 E-value=0.099 Score=57.03 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 58999999999999999999999999999987654
No 359
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.95 E-value=0.08 Score=48.00 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 160 v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
|+|+|+|..|...|+.|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999854
No 360
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.06 Score=55.31 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 469999999999999999999999999999975
No 361
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.84 E-value=0.46 Score=56.80 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHcCceEEeCceeeEEEEeCCEEEEEEeC----CCcEEEcCEEEECCChhH
Q 008069 396 LADKGSEILYKANVTKVILEQGKAVGVRLS----DGREFYAKTIISNATRWD 443 (579)
Q Consensus 396 l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~----dG~~i~Ad~VV~a~~~~~ 443 (579)
++++|+++++++.|++|.- ++++.+|++. +++++.+|.|+++.|...
T Consensus 361 L~~~GV~i~~~~~v~~i~g-~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEG-GKRVSGVAVARNGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred HHHcCCEEEcCCeEEEEec-CCcEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence 5677899999999999964 3455566654 456799999999998654
No 362
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.79 E-value=0.09 Score=54.15 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..++|+|||+|..|...|..|++.|++|+++.|..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999999864
No 363
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.78 E-value=0.087 Score=44.66 Aligned_cols=91 Identities=24% Similarity=0.308 Sum_probs=55.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC--CCCcceeEEeeCCeeecc-ccccccCCC-CCCChHHHHHHHHH
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSSGYYERDGYTFDV-GSSVMFGFS-DKGNLNLITQALAA 231 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~~t~~~~g~~~~~-G~~~~~g~~-~~~~~~~~~~~l~~ 231 (579)
+..+|+|||||..|..-+..|.+.|.+|+|+.... .- +... +...+|.-+. |...+.... +......+.+..+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-~~i~-~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~ 83 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-GLIQ-LIRREFEEDLDGADLVFAATDDPELNEAIYADARA 83 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-TSCE-EEESS-GGGCTTESEEEE-SS-HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-hHHH-HHhhhHHHHHhhheEEEecCCCHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999873 12 3333 4444443222 333333222 22223446667777
Q ss_pred cCCceeEeeCCCeEEEE
Q 008069 232 VGCEMEVIPDPTTVHFH 248 (579)
Q Consensus 232 ~g~~~~~~~~~~~~~~~ 248 (579)
.|+.+....++....|.
T Consensus 84 ~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 84 RGILVNVVDDPELCDFI 100 (103)
T ss_dssp TTSEEEETT-CCCCSEE
T ss_pred CCEEEEECCCcCCCeEE
Confidence 88777665555444443
No 364
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.082 Score=53.69 Aligned_cols=34 Identities=32% Similarity=0.257 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999998764
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.51 E-value=0.09 Score=57.06 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|+|+|.+|+++|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999964
No 366
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.51 E-value=0.11 Score=53.57 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|+|||+|..|..-|..+++.|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 367
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.25 E-value=0.15 Score=45.52 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCc-EEEEecC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKY 189 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~ 189 (579)
...+++|||+|-+|.+++..|+..|.+ |+|+.|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 358899999999999999999999987 9999985
No 368
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.10 E-value=0.13 Score=55.67 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
...+++|||||..|+-.|..+++.|.+|+|+|+.+++-
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 34679999999999999999999999999999988763
No 369
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.09 E-value=0.11 Score=52.89 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 370
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.97 E-value=0.11 Score=52.85 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 369999999999999999999999999999865
No 371
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.92 E-value=0.13 Score=52.39 Aligned_cols=33 Identities=30% Similarity=0.226 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 372
>PLN02507 glutathione reductase
Probab=92.86 E-value=0.19 Score=55.34 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||+|..|+-.|..|++.|.+|+|+++.+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 368999999999999999999999999999997754
No 373
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.80 E-value=0.16 Score=47.18 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=29.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|+|+|.+|..||..|.+.|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4799999999999999999999999999999753
No 374
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.68 E-value=0.15 Score=52.33 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
.++|+|||+|..|...|.+|++.|.+|+++.|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 367999999999999999999999999999995
No 375
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.53 E-value=0.15 Score=52.14 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|+|||+|..|...|..|++.|++|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999843
No 376
>PRK06116 glutathione reductase; Validated
Probab=92.47 E-value=0.22 Score=54.06 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 368999999999999999999999999999997754
No 377
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.46 E-value=0.15 Score=52.11 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEec
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~ 188 (579)
+|+|||+|..|...|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 378
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.22 E-value=0.15 Score=48.40 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35899999999999999999999999999998865
No 379
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=92.11 E-value=0.05 Score=56.85 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=53.5
Q ss_pred cccccccccCcceEEeecccchhhhhhhhhccccccccccCCCCCcccccccccccccccccccccccccccccCCcccc
Q 008069 14 NFTPSLINHNSQVLIHQNRSKFTALSNKVQSFGQRDAMQLGSSSKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYE 93 (579)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (579)
+|...++.+.++|||+.++|+.|+.++++..-+..|+ ..+.|+++++|.|.
T Consensus 278 ~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDl-----------------------------Va~gR~~ladP~~~ 328 (363)
T COG1902 278 EFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADL-----------------------------VAMGRPFLADPDLV 328 (363)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCE-----------------------------EEechhhhcCccHH
Confidence 4555688999999999999999999999999999999 99999999999998
Q ss_pred ccccccCCC
Q 008069 94 KSSLFSGDS 102 (579)
Q Consensus 94 ~~~~~~~~~ 102 (579)
.+.......
T Consensus 329 ~k~~~g~~~ 337 (363)
T COG1902 329 LKAAEGREL 337 (363)
T ss_pred HHHHcCCCc
Confidence 887666654
No 380
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.08 E-value=0.16 Score=51.62 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 381
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.08 E-value=0.17 Score=52.66 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
++|.|||+|-.||+.|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 478999999999999999999999999999864
No 382
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=91.83 E-value=0.15 Score=50.80 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhHHHhhccCCC
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~~~~~Ll~~~ 452 (579)
.+...|.+.+.++|+++. ..+|+++.. +.+ -.+|.||.|+|.+. ++|.+++
T Consensus 152 ~ylpyl~k~l~e~Gvef~-~r~v~~l~E---------~~~---~~~DVivNCtGL~a--~~L~gDd 202 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFV-QRRVESLEE---------VAR---PEYDVIVNCTGLGA--GKLAGDD 202 (342)
T ss_pred hhhHHHHHHHHhcCcEEE-EeeeccHHH---------hcc---CCCcEEEECCcccc--ccccCCc
Confidence 456678899999999986 445666531 111 35899999999987 5777764
No 383
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.82 E-value=0.23 Score=51.42 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
++|.|||+|..|.+.|..|++.|++|++++|..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999954
No 384
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.81 E-value=0.23 Score=51.00 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.++|.|||+|..|.+.|..|+++|++|++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4679999999999999999999999999999965
No 385
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.68 E-value=0.22 Score=51.84 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|...|..|+++|++|++++|..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 469999999999999999999999999999853
No 386
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.56 E-value=0.2 Score=50.73 Aligned_cols=33 Identities=30% Similarity=0.243 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 469999999999999999999999999999865
No 387
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.52 E-value=0.26 Score=47.24 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (579)
..+|+|||+|..|..+|..|++.|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5789999999999999999999999 59999986
No 388
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.50 E-value=0.34 Score=53.11 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
.+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999974
No 389
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.49 E-value=0.24 Score=50.87 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g--~~v~~~e~~~ 190 (579)
++|.|||+|..|.++|+.|+++| .+|+++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 36999999999999999999999 4799999865
No 390
>PRK04148 hypothetical protein; Provisional
Probab=91.44 E-value=0.2 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.++++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 679999999 999999999999999999998764
No 391
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.44 E-value=0.26 Score=50.68 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999854
No 392
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.35 E-value=0.26 Score=54.31 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998654
No 393
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.32 E-value=0.36 Score=52.02 Aligned_cols=59 Identities=27% Similarity=0.306 Sum_probs=43.3
Q ss_pred ccEEEECCChhHHHHHHHHHH--------------cCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChH
Q 008069 158 YDAIVIGSGIGGLVAATQLAV--------------KGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLN 223 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~--------------~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~ 223 (579)
.+|+|||||..|+-.|..|+. .|.+|+|+++.+.+.... + .....
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~----------~-----------~~~~~ 232 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSF----------D-----------QALRK 232 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccC----------C-----------HHHHH
Confidence 489999999999999998875 378899999977553211 1 11234
Q ss_pred HHHHHHHHcCCcee
Q 008069 224 LITQALAAVGCEME 237 (579)
Q Consensus 224 ~~~~~l~~~g~~~~ 237 (579)
.+.+.|++.|+++.
T Consensus 233 ~~~~~L~~~gV~v~ 246 (424)
T PTZ00318 233 YGQRRLRRLGVDIR 246 (424)
T ss_pred HHHHHHHHCCCEEE
Confidence 56778888888764
No 394
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.32 E-value=0.31 Score=44.79 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEec
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~ 188 (579)
...+|+|||||..|..-|..|.+.|.+|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 457899999999999999999999999999953
No 395
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.20 E-value=0.22 Score=53.43 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
++|.|||.|..|+..|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998653
No 396
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.17 E-value=0.23 Score=53.31 Aligned_cols=33 Identities=33% Similarity=0.246 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998654
No 397
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.13 E-value=0.27 Score=51.69 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcC-CcEEEEecC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKY 189 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g-~~v~~~e~~ 189 (579)
.+|+|||+|..|.++|+.|+++| .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 68999999999999999999999 899999997
No 398
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.12 E-value=0.33 Score=45.07 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCccEEEECCCh-hHHHHHHHHHHcCCcEEEEecC
Q 008069 156 DDYDAIVIGSGI-GGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 156 ~~~~v~viG~g~-~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
..++|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 468999999996 6999999999999999999985
No 399
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.05 E-value=0.25 Score=52.29 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=44.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-------------CcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChH
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKG-------------ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLN 223 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g-------------~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~ 223 (579)
..+++|||||+.|.-.|..|+..- .+|+|+|+.+++.- .+. +....
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp--------------------~~~-~~l~~ 213 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP--------------------MFP-PKLSK 213 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc--------------------CCC-HHHHH
Confidence 357999999999999999887531 27888888776532 111 12345
Q ss_pred HHHHHHHHcCCceeE
Q 008069 224 LITQALAAVGCEMEV 238 (579)
Q Consensus 224 ~~~~~l~~~g~~~~~ 238 (579)
...+.|+++|+++..
T Consensus 214 ~a~~~L~~~GV~v~l 228 (405)
T COG1252 214 YAERALEKLGVEVLL 228 (405)
T ss_pred HHHHHHHHCCCEEEc
Confidence 677899999998764
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.01 E-value=0.29 Score=49.92 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 401
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.97 E-value=0.32 Score=49.85 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
++|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999887 899999843
No 402
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.70 E-value=0.33 Score=51.24 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|||+|.+|+.+|..|.+.|.+|+++|+..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999853
No 403
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.69 E-value=0.3 Score=50.52 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.|||+|..|.+.|..|+++|++|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999854
No 404
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.66 E-value=0.36 Score=44.50 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.+||-|..|...|..|.++|++|.++|+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 579999999999999999999999999999864
No 405
>PRK12831 putative oxidoreductase; Provisional
Probab=90.55 E-value=0.34 Score=52.86 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35799999999999999999999999999999754
No 406
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.48 E-value=0.43 Score=49.14 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCC--cEEEEecCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (579)
+...+|+|||+|..|.++|+.|+..|. ++.++|.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 445799999999999999999999987 799999854
No 407
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.32 E-value=0.37 Score=54.71 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=33.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (579)
..+|+|||||..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 3589999999999999999999999999999987654
No 408
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.25 E-value=0.35 Score=53.16 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|+++|++|+|+|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 409
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.02 E-value=0.39 Score=51.53 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=33.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
.++|+|+|-|..|+++|..|.+.|++|++.|..+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 588999999999999999999999999999976655
No 410
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.95 E-value=0.39 Score=49.50 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 369999999999999999999999999999864
No 411
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.90 E-value=0.27 Score=50.68 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=49.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCCCcceeEEeeCCeeeccccccccCCCCCCChHHHHHHHHHcCCce
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~~~G~~~~~g~~~~~~~~~~~~~l~~~g~~~ 236 (579)
..+.+|||||..||-.+..-.|.|-+|+++|-.+.+||... ........++|+..|+++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------~Eisk~~qr~L~kQgikF 269 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------GEISKAFQRVLQKQGIKF 269 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------HHHHHHHHHHHHhcCcee
Confidence 46899999999999999999999999999999999888532 123445777888888776
Q ss_pred eE
Q 008069 237 EV 238 (579)
Q Consensus 237 ~~ 238 (579)
.+
T Consensus 270 ~l 271 (506)
T KOG1335|consen 270 KL 271 (506)
T ss_pred Ee
Confidence 53
No 412
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.88 E-value=0.4 Score=53.07 Aligned_cols=35 Identities=37% Similarity=0.270 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
..+|+|||||..|+-+|..|+..|.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 46899999999999999999999999999987653
No 413
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.83 E-value=0.43 Score=48.42 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
..+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4789999999999999999999998 699999863
No 414
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.79 E-value=0.39 Score=53.62 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
..+|+|||||..|+-.|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 47899999999999999999999999999999764
No 415
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.78 E-value=0.54 Score=48.59 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (579)
..+|+|||+|..|.+.|+.++..|. +|+++|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999996 8999998664
No 416
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.67 E-value=0.35 Score=53.10 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998643
No 417
>PRK02106 choline dehydrogenase; Validated
Probab=89.60 E-value=0.48 Score=52.97 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=33.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHH-cCCcEEEEecCCC
Q 008069 155 ADDYDAIVIGSGIGGLVAATQLAV-KGARVLVLEKYVI 191 (579)
Q Consensus 155 ~~~~~v~viG~g~~g~~~a~~l~~-~g~~v~~~e~~~~ 191 (579)
...+|+||||||.+|+.+|..|++ .|++|+|||+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 346999999999999999999999 7999999999753
No 418
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.59 E-value=0.52 Score=51.05 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (579)
..+|+|+|.|.+|+++|..|+++|++|+++|.....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 357999999999999999999999999999986543
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.58 E-value=0.4 Score=52.44 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999999854
No 420
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.56 E-value=0.51 Score=45.20 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+.++|+|.|-.|..+|..|.+.|++|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999753
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.46 E-value=0.47 Score=50.52 Aligned_cols=35 Identities=37% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
....|+|+|+|+.|+.+|..++..|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 35789999999999999999999999999999865
No 422
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.38 E-value=0.41 Score=48.14 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=36.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecC--------CCCCcceeE
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY--------VIPGGSSGY 198 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~--------~~~gg~~~t 198 (579)
..-+|+|||+|.+|.-+|..+...|.+|+++|.+ +..||+..+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~ 217 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHT 217 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEE
Confidence 4578999999999999999999999999999997 334666554
No 423
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.38 E-value=0.47 Score=51.40 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...|+|+|+|.+|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 424
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.30 E-value=0.44 Score=51.85 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|+|.|.+|+++|..|.+.|++|++.|+.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3579999999999999999999999999999864
No 425
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.29 E-value=0.51 Score=40.50 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 160 v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
|+|+|.|..|...|..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999888999999976
No 426
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.15 E-value=0.48 Score=43.46 Aligned_cols=35 Identities=37% Similarity=0.279 Sum_probs=28.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+.++|+|-|..|..+|..|+..|.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 35789999999999999999999999999999865
No 427
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=89.07 E-value=0.28 Score=48.10 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCcEEEEecCCCCCccee
Q 008069 159 DAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (579)
+.+|||||+||.+||-.|+.. ..+|+++-+.+.+-...+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn 41 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN 41 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh
Confidence 368999999999999999973 457999998877654443
No 428
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.07 E-value=0.55 Score=47.46 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4689999999999999999999999999999854
No 429
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.04 E-value=0.64 Score=41.33 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
+.+|+|||+|..|...|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 599999854
No 430
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.04 E-value=0.36 Score=53.92 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 389 ~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
...|.+.+++.|.++++++.+++|.. .+++.+|+++||.++.||.||.|+|...
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEeccccc
Confidence 35677889999999999999999986 6778899999999999999999999654
No 431
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=88.99 E-value=0.53 Score=49.25 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCc-EEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (579)
...|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999999999999999997 99998754
No 432
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.89 E-value=0.54 Score=47.98 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+|+|||.|.+|..+|..|.+.|.+|+++++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35789999999999999999999999999999974
No 433
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.72 E-value=0.43 Score=49.71 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCCCcEEEcCEEEECCChhH
Q 008069 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (579)
Q Consensus 387 ~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~dG~~i~Ad~VV~a~~~~~ 443 (579)
-|.+.-.+.+++.|++|+-|+.|+++...-+.+. +.+.||.+++.|.||+|+|--.
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~-lkL~dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV-LKLSDGSELRTDLVVVAVGEEP 449 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhccceE-EEecCCCeeeeeeEEEEecCCC
Confidence 3455666788999999999999999988766665 7899999999999999998544
No 434
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.71 E-value=0.5 Score=47.78 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999854
No 435
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.63 E-value=0.52 Score=50.01 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
+|.|||.|..|+..|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 59999999999999988875 999999998653
No 436
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.54 E-value=0.59 Score=48.64 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
..+|+|||+|-.|..+|..|++.|+ +++|+|+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4789999999999999999999998 799999864
No 437
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.50 E-value=0.59 Score=45.38 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.1
Q ss_pred cEEEEC-CChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.||| +|..|.+.|..|++.|++|++++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998754
No 438
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=88.30 E-value=0.66 Score=45.35 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCc---EEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGAR---VLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~---v~~~e~~~ 190 (579)
..+|+|+|+|-+|..+|..|.+.|.+ |.+++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46899999999999999999999975 99999974
No 439
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.28 E-value=0.63 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CcEEEEecCCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVI 191 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g--~~v~~~e~~~~ 191 (579)
+|+|||+|..|.++|+.|+..| .+++++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 57999999653
No 440
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.21 E-value=0.57 Score=51.15 Aligned_cols=34 Identities=15% Similarity=-0.030 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.+.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3679999999999999999999999999999654
No 441
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.19 E-value=0.67 Score=48.25 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
...+|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35789999999999999999999999 799999854
No 442
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.13 E-value=0.55 Score=51.15 Aligned_cols=36 Identities=19% Similarity=0.006 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHH-HHHHHHHcCCcEEEEecCCC
Q 008069 156 DDYDAIVIGSGIGGLV-AATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~-~a~~l~~~g~~v~~~e~~~~ 191 (579)
...+|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3467999999999999 69999999999999998653
No 443
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.12 E-value=0.57 Score=51.00 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~--g~~v~~~e~~~ 190 (579)
++|.|||+|..|+..|..|+++ |++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5699999999999999999998 47899999754
No 444
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.03 E-value=0.74 Score=46.81 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCc-EEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (579)
...++|+|||-+|.++|..|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46799999999999999999999997 99999853
No 445
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.01 E-value=0.58 Score=47.69 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||||..|-..|..++..|++|+++|.+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 679999999999999999999889999999973
No 446
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.83 E-value=0.97 Score=36.73 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.2
Q ss_pred CccEEEECCChhHHHHHHHHHHc-CCcEEEEec
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVK-GARVLVLEK 188 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~-g~~v~~~e~ 188 (579)
..+++|+|+|..|..+|..|.+. +.+|.+++|
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 678999998
No 447
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.81 E-value=0.67 Score=47.07 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=32.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+++|||.|..|.+.|..|+..|.+|++++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999864
No 448
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.77 E-value=0.73 Score=47.23 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-cEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (579)
.+|+|||+|..|.+.|..|+..|. +|+++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 589999999999999999999876 8999998553
No 449
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.70 E-value=0.63 Score=51.09 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
..+|+|+|.|.+|++++..|.+.|++|++.|+.
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999965
No 450
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.59 E-value=0.55 Score=54.03 Aligned_cols=34 Identities=35% Similarity=0.318 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+|+|||+|..|...|..+++.|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 451
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.56 E-value=0.81 Score=45.81 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-cEEEEecCCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (579)
...+|+|||.|..|..+|..|++.|. +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 35789999999999999999999995 6999997553
No 452
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=87.52 E-value=0.96 Score=40.68 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=29.3
Q ss_pred ccEEEECC-ChhHHHHHHHHHHcCC--cEEEEecCC
Q 008069 158 YDAIVIGS-GIGGLVAATQLAVKGA--RVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~-g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (579)
.+|.|||+ |..|.+.|..|...|. ++.++|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999865 699999864
No 453
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=87.45 E-value=0.57 Score=47.61 Aligned_cols=32 Identities=28% Similarity=0.202 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999864
No 454
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=87.31 E-value=0.7 Score=46.65 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeCC-Cc--EEEcCEEE
Q 008069 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYAKTII 436 (579)
Q Consensus 384 G~~~l~~aL~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~d-G~--~i~Ad~VV 436 (579)
|....+++|.+.++++.++|.+.....++..++.+.+--.+.+ |. +++++.+=
T Consensus 234 gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLH 289 (446)
T KOG3851|consen 234 GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLH 289 (446)
T ss_pred cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeee
Confidence 5678999999999999999999998988887665543111223 53 45666543
No 455
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.21 E-value=0.76 Score=41.07 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.6
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 160 v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
++|+|+|+.+.+.|..++..|++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998743
No 456
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.16 E-value=0.89 Score=43.59 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
...+|+|||.|..|..+|..|++.|. +++++|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45789999999999999999999998 799999853
No 457
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.15 E-value=0.91 Score=43.09 Aligned_cols=33 Identities=39% Similarity=0.514 Sum_probs=30.0
Q ss_pred CccEEEECC-ChhHHHHHHHHHHcCCcEEEEecC
Q 008069 157 DYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~-g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
..+++|+|| |..|..+|..|++.|++|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999997 999999999999999999999875
No 458
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=0.55 Score=47.89 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=30.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+||+|||||-+|.-+|..|+---..|+|+|=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 46899999999999999999998666799999543
No 459
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=87.11 E-value=0.21 Score=52.71 Aligned_cols=66 Identities=12% Similarity=-0.038 Sum_probs=56.1
Q ss_pred cccccccccCcceEEeecccchhhhhhhhhccccccccccCCCCCcccccccccccccccccccccccccccccCCcccc
Q 008069 14 NFTPSLINHNSQVLIHQNRSKFTALSNKVQSFGQRDAMQLGSSSKPRIRNCMIQSFEHVNTLPFSDYKFSRMKLFKPRYE 93 (579)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (579)
.+...++.+.++|||...++++|+.++++..-+..|+ ..+.|+++++|.|.
T Consensus 279 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~-----------------------------V~~gR~~ladP~l~ 329 (370)
T cd02929 279 PYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDL-----------------------------IGAARPSIADPFLP 329 (370)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCe-----------------------------eeechHhhhCchHH
Confidence 3445688899999999999999999999999999999 99999999999999
Q ss_pred ccccccCCCCCCCCC
Q 008069 94 KSSLFSGDSLKSSNF 108 (579)
Q Consensus 94 ~~~~~~~~~~~~~~~ 108 (579)
++..-.......+|.
T Consensus 330 ~k~~~g~~~~i~~Ci 344 (370)
T cd02929 330 KKIREGRIDDIRECI 344 (370)
T ss_pred HHHHcCCccccccCC
Confidence 888766655454433
No 460
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.02 E-value=0.93 Score=42.35 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCc-EEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (579)
+|+|||+|..|...|..|++.|.. ++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999854
No 461
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.00 E-value=0.63 Score=53.49 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
-.+|.|||||..|...|..++.+|++|+++|.+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998653
No 462
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.76 E-value=0.87 Score=48.39 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=32.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 35789999999999999999999999999999865
No 463
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.74 E-value=1 Score=46.40 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (579)
+.+|+|||+|..|.++|+.|+..|. +++|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5799999999999999999998876 599999854
No 464
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.65 E-value=0.94 Score=48.95 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
..+|.|||-|.+|++++..|++.|++|++.|....
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 46799999999999999999999999999997543
No 465
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.57 E-value=0.82 Score=49.98 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|.|+|.|.+|+++|..|.+.|++|++.|+..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 3569999999999999999999999999999753
No 466
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.47 E-value=1 Score=40.38 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
+|+|||.|-.|...|..|++.|. +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 599999754
No 467
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.34 E-value=0.87 Score=52.90 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCc-EEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (579)
..+|+|||||..|+-+|..+.+.|.+ |+|+++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47899999999999999999999997 99999854
No 468
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.31 E-value=1 Score=46.45 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (579)
..+|+|||+|..|.+.|+.|+..| .+++++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 578999999999999999999988 5899999865
No 469
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.29 E-value=0.81 Score=43.88 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
....|.|||||..|...|...+..|+.|.++|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 357899999999999999999999999999998653
No 470
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.28 E-value=1 Score=45.35 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+++|+|+|.+|.+.|..|++.|.+|++++|+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4679999999999999999999999999998853
No 471
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.23 E-value=0.87 Score=49.76 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|+|+|..|+.++..+...|.+|+++|++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999999999999999999999999999854
No 472
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.12 E-value=1.1 Score=43.28 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCc-EEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (579)
...+|+|||+|..|..+|..|++.|.. ++++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 357899999999999999999999985 99999853
No 473
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.91 E-value=1.1 Score=44.20 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
..+|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5789999999999999999999997 599999854
No 474
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.81 E-value=1 Score=49.60 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|.|+|.|.+|+++|..|.++|++|++.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 475
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=85.80 E-value=0.97 Score=45.59 Aligned_cols=34 Identities=29% Similarity=0.293 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+|.+||-|..|...|.+|.++|++|+|++|.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 3689999999999999999999999999999753
No 476
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.62 E-value=0.99 Score=49.05 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=29.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4679999999999999999995 9999999964
No 477
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.56 E-value=0.79 Score=52.84 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+|.|||+|..|...|..++..|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 5799999999999999999999999999998653
No 478
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.53 E-value=1.1 Score=45.83 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC--cEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (579)
.+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999985 799999854
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.47 E-value=1.1 Score=47.94 Aligned_cols=35 Identities=34% Similarity=0.266 Sum_probs=32.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
....|+|+|.|..|..+|..|+..|.+|+++|+.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 35789999999999999999999999999999865
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.31 E-value=0.94 Score=49.10 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
+|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998543
No 481
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.27 E-value=0.95 Score=46.18 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.|||.|..|...|..|+++|++|+++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999864
No 482
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=85.23 E-value=1.2 Score=45.08 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
..+|+|||+|-+|.++++.|++.|. +|+|+.|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4689999999999999999999997 599998853
No 483
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.18 E-value=1.2 Score=44.94 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (579)
..+|+|+|+|-+|.++|..|+..| .+|+|+.|+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 468999999999999999999999 6899999854
No 484
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.08 E-value=1 Score=46.12 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 160 AIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 160 v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
|.|||+|..|...|..|+.+|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999877 999999864
No 485
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.05 E-value=0.99 Score=46.30 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
++|.|+|+|..|...|+.|++.|.+|+++=|...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4699999999999999999999988888887653
No 486
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.92 E-value=0.97 Score=49.18 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (579)
.+|.|||.|.+|+++|..|.+.|++|++.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 57999999999999999999999999999965
No 487
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=84.90 E-value=1.3 Score=44.92 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
...|+|+|+|-++.++|+.|++.|. +|+|+.|..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4679999999999999999999997 599998853
No 488
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.82 E-value=1.2 Score=45.62 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 159 ~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999865
No 489
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.69 E-value=1.1 Score=45.47 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999864
No 490
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.66 E-value=1.1 Score=48.73 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
--|+|||.|.+|+++|..|.+.|++|++.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 458999999999999999999999999999754
No 491
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.54 E-value=2.3 Score=46.48 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=40.1
Q ss_pred HHHHHHHcCceEEeCceeeEEEEeCCEEEEEEeC-----CC---------cEEEcCEEEECCChh
Q 008069 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-----DG---------REFYAKTIISNATRW 442 (579)
Q Consensus 392 L~~~l~~~G~~I~l~~~V~~I~~~~~~v~gV~~~-----dG---------~~i~Ad~VV~a~~~~ 442 (579)
..+.+++.|+++++++.+++|..+++++++|++. +| +++.+|.||+++|..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~ 399 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence 3566778899999999999997667888777642 22 369999999999943
No 492
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.52 E-value=1.5 Score=39.60 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=30.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (579)
..+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 467999999999999999999986 7899998854
No 493
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.48 E-value=1.4 Score=43.64 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
...+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35799999999999999999999998 699999753
No 494
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=84.48 E-value=1.4 Score=44.35 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCc-EEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (579)
.+|+|+|+|-++.++++.|++.|.+ |+|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4799999999999999999999975 99999864
No 495
>PRK08328 hypothetical protein; Provisional
Probab=84.43 E-value=1.4 Score=43.20 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-cEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (579)
..+|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5789999999999999999999998 589998754
No 496
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.35 E-value=1 Score=51.69 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHH-HcCCcEEEEecCC
Q 008069 158 YDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYV 190 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~-~~g~~v~~~e~~~ 190 (579)
.+|.|||+|..|...|..++ +.|++|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 57999999999999999998 5899999999865
No 497
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=84.33 E-value=1.2 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 157 ~~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
..+|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4789999999999999999999999999998764
No 498
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.32 E-value=1.4 Score=43.54 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-----------cEEEEecC
Q 008069 156 DDYDAIVIGSGIGGLVAATQLAVKGA-----------RVLVLEKY 189 (579)
Q Consensus 156 ~~~~v~viG~g~~g~~~a~~l~~~g~-----------~v~~~e~~ 189 (579)
...+|+|||+|-.|..++..|++.|+ +++|+|..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 46899999999999999999999753 66777753
No 499
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=84.21 E-value=1.3 Score=46.80 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCccEEEEC-CChhHHHHHHHHHHcCCcEEEEecCC
Q 008069 156 DDYDAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (579)
Q Consensus 156 ~~~~v~viG-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (579)
...+|+||| .|..|-+.|..|+++|++|+++++.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 447899999 89999999999999999999999853
No 500
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=84.03 E-value=1.1 Score=48.75 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCcEEEEecCCC
Q 008069 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (579)
Q Consensus 158 ~~v~viG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (579)
.+|.|||.|..|.+.|..|+++|++|++++|+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999654
Done!