BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008071
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 349 bits (895), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 295/545 (54%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEEXTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+SDG +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 348 bits (892), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 295/545 (54%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEECTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+SDG +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 348 bits (892), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 294/545 (53%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEEXTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+SDG +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHALEHEDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 347 bits (890), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 295/545 (54%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEEXTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+S+G +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSEGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 295/545 (54%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEECTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+SDG +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+H+D MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHDDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 295/545 (54%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEECTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+S+G +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSNGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 294/545 (53%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEEXTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+SDG +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+H D MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHTDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 345 bits (884), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 294/545 (53%), Gaps = 44/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTA 97
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 3 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEECTHQLHRDLPPTRLWGY-----NG 53
Query: 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK-GIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + + ++ + TVVHLHGG+
Sbjct: 54 LFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD 113
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+S G +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 114 DSAGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 173
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 174 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 231
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 232 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 291
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 292 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 348
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 349 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 407
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 408 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 455
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+HED MM
Sbjct: 456 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHEDYDMM 503
Query: 573 RPLKL 577
RP+ +
Sbjct: 504 RPMDI 508
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 208/545 (38%), Positives = 293/545 (53%), Gaps = 47/545 (8%)
Query: 38 LEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKK-KWKFHRDLPPTPVYAYGTSKHT 96
LE FVD LP +K + + ++ M + + HRDLPPT ++ Y
Sbjct: 2 LEKFVDALPIPDTLKPVQQSKEKT----YYEVTMEEXCTHQLHRDLPPTRLWGY-----N 52
Query: 97 ATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP 156
PGPTIE + YV W N+LPS H LP D TI + ++ + TVVHLHGG+
Sbjct: 53 GLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHS---EEPEVKTVVHLHGGVTPD 109
Query: 157 ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYI 216
+SDG +WF+ F++ GP + ++ YHY N Q+ LWYHDHAM LTR+N+ AGLVGAYI
Sbjct: 110 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 169
Query: 217 VRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPS---IHPQWQPEYFGD 273
+ H E L+LPS DE+D PL++ DR+ DGS++ S NPS +P P + G+
Sbjct: 170 I-HDPKEKRLKLPS-DEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGE 227
Query: 274 AIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNE 333
I+VNGK WP + V RKYRFR+INASN R Y NG FI + +D L R V N
Sbjct: 228 TILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 287
Query: 334 TLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKF-IIKKNHELDT 392
LAP+E D++IDF+ + + ILAN A GD + + +M+F + K + D
Sbjct: 288 FSLAPAERYDIIIDFTAYEGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDE 344
Query: 393 WRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSE 452
R P+ L YPS R + + + P L +N K + +PVTETPK GT+E
Sbjct: 345 SRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGRPV-LLLNNKRWHDPVTETPKVGTTE 403
Query: 453 VWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512
+W++IN T HP+H+HL F VLD+R + +Y ++ + + G +
Sbjct: 404 IWSIINPTRGTHPIHLHLVSFRVLDRRPF--------DIARYQESGELSYT----GPAVP 451
Query: 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
EKGWK+ + G V +I F P+ YV+HCH+L+H D MM
Sbjct: 452 PPPSEKGWKDTIQAHAGEVLRIAATFG--------PYSGR----YVWHCHILEHLDYDMM 499
Query: 573 RPLKL 577
RP+ +
Sbjct: 500 RPMDI 504
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 164/629 (26%), Positives = 254/629 (40%), Gaps = 121/629 (19%)
Query: 30 ERLINPSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYA 89
E+ P +L F L P ++ D ++ +I + + H LPPT ++
Sbjct: 3 EQAPAPGELTPFAAPLTVPPVLRPASDEVT-----RETEIALRPTWVRLHPQLPPTLMWG 57
Query: 90 YGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP----- 144
Y VPGPTIE G + W N +P P +P G P
Sbjct: 58 Y-----DGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYP---VTSVEVPLGPPGTPAPNTE 109
Query: 145 ------------------TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHN 186
+V HLHG +DG A++ GF + + Y N
Sbjct: 110 PGRGGVEPNKDVAALPAWSVTHLHGAQTGGGNDGWADN--AVGFGDA------QLSEYPN 161
Query: 187 MQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFR 246
Q WYHDHAM +TR N++AGL G Y+VR D E L LPSGD + PL++ DR+
Sbjct: 162 DHQATQWWYHDHAMNITRWNVMAGLYGTYLVR-DDEEDALGLPSGDR-EIPLLIADRNLD 219
Query: 247 TDGSIYMNS---------TGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRII 297
TD +N +NP +FG VNG+ WP V YR R++
Sbjct: 220 TDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIWPYADVDDGWYRLRLV 279
Query: 298 NASNARFYRFFFTNG-----LRFIH-VAADSAYLGRPVVT--NETL----LAPSEIADVV 345
NASNAR Y + +H + +D L RPV ++TL AP+E D++
Sbjct: 280 NASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLL 339
Query: 346 IDFSESKSDVAILANDAP-YPYPSGDPVNDAN-GKVMKFIIKKNHELDTWRVPE------ 397
+DF L + P P + DP+ +VM+F +++ E D++ +PE
Sbjct: 340 VDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSF 399
Query: 398 -----------KLIKYPSPNPSSASRTRYI---AMYEYTSDIDEPTHLFIN--------- 434
+LI P + I A E +D+ P I
Sbjct: 400 RRMSHDIPHGHRLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTK 459
Query: 435 -----GKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKA 489
+++ + + T GT E W +NL+ HP+HIHL F VL R+ F
Sbjct: 460 TYRRTARTFNDGLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVL-GRDAYDASGFDL 518
Query: 490 CMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPF 549
+ ++ + ++ +E G K+V+++ +++ +F +
Sbjct: 519 ALGGTRTPVRLDPD-----TPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGR----- 568
Query: 550 DPTAEPGYVYHCHVLDHEDNVMMRPLKLI 578
++YHCH+L+HED MMRP ++
Sbjct: 569 -------FMYHCHLLEHEDMGMMRPFVVM 590
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 208/487 (42%), Gaps = 99/487 (20%)
Query: 100 PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESD 159
PGPT + G++T V + N+ + P VHLHG D
Sbjct: 67 PGPTFQVPRGVETVVRFINNAEA---------------------PNSVHLHGSFSRAAFD 105
Query: 160 GNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219
G A E G + K Y+Y N Q LWYHDHAM +T N G G Y++
Sbjct: 106 GWAED-----ITEPG---SFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTD 157
Query: 220 HDVETPLRLPSG-DEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVN 278
E L LPSG EFD P+++ + + +G++ + N ++GD I VN
Sbjct: 158 -PAEDALNLPSGYGEFDIPMILTSKQYTANGNLVTTNGELN---------SFWGDVIHVN 207
Query: 279 GKAWPRMTVRRRKYRFRIINASNARFYRFFFTNG------LRFIHVAADSAYLGRPVVTN 332
G+ WP V RKYRFR ++A+ +R + +F + L F +A+DS L P T+
Sbjct: 208 GQPWPFKNVEPRKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTS 267
Query: 333 ETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSG-DPVNDANGKVMKFIIKKN-HEL 390
++ +E +VV DFS+ L N G D D KVM+F++ + +
Sbjct: 268 LLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQP 327
Query: 391 DTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSY---EEPVTETPK 447
DT VP L P P+P++ + ++ + T PT ING ++ + +
Sbjct: 328 DTSVVPANLRDVPFPSPTTNTPRQF--RFGRTG----PTWT-INGVAFADVQNRLLANVP 380
Query: 448 AGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYA 506
GT E W +IN HP+HIHL F V IS+ +
Sbjct: 381 VGTVERWELINAGNGWTHPIHIHLVDFKV--------------------------ISRTS 414
Query: 507 RGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLD 565
V +E G K+V + G ++V Y PF PG Y++HCH L
Sbjct: 415 GNNARTVMPYESGLKDVVWL--GRRETVVVEAHYA------PF-----PGVYMFHCHNLI 461
Query: 566 HEDNVMM 572
HED+ MM
Sbjct: 462 HEDHDMM 468
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 128/517 (24%), Positives = 199/517 (38%), Gaps = 126/517 (24%)
Query: 84 PTPVYAYGTSK----HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRK 139
PTP+ G + + PGPT+ +T +N LP
Sbjct: 25 PTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPE----------------- 67
Query: 140 KKGIPTVVHLHGGIDEPESDGNANSWFTAGFKE--KGPTWTKKTYHYHNMQQ-PGNLWYH 196
PT +H HG P+ D F E G +WT Y + ++ G WYH
Sbjct: 68 ----PTNLHWHGLPISPKVDDP--------FLEIPPGESWT---YEFTVPKELAGTFWYH 112
Query: 197 DHAMGLTRINLLAGLVGAYIVRHHDVETPL-RLPSGDEFDRPLVVFDRSFRTDGSIYMNS 255
H G L AGL+GA +V E+ L +P E + L+V +
Sbjct: 113 PHLHGRVAPQLFAGLLGALVV-----ESSLDAIPELREAEEHLLVLKD---------LAL 158
Query: 256 TGNNPSIHP--QWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGL 313
G P+ H W GD ++VNG P + ++ R R++NASNAR+YR +
Sbjct: 159 QGGRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQKATLRLRLLNASNARYYRLALQDHP 218
Query: 314 RFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPY--------- 364
++ +AAD +L P+ +E LLAP E A+V++ + + L PY
Sbjct: 219 LYL-IAADGGFLEEPLEVSELLLAPGERAEVLVRL---RKEGRFLLQALPYDRGAMGMMD 274
Query: 365 --PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT 422
P + + + ++I + P P + TR + + T
Sbjct: 275 MGGMAHAMPQGPSRPETLLYLIAPKNPKPLP---LPKALSPFPTLPAPVVTRRLVL---T 328
Query: 423 SDIDEPTHLFINGKSYE-EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQREL 481
D+ FING+ ++ V +A T EVW V N + +HP H+H+ F VL
Sbjct: 329 EDMMA-ARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVL----- 382
Query: 482 VKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYI 541
++ Y + WK+V + G V ++LV
Sbjct: 383 ---------------SVGGRPFPY------------RAWKDVVNLKAGEVARLLV----- 410
Query: 542 HSNASYPFDPTAEPGY-VYHCHVLDHEDNVMMRPLKL 577
P E G V+HCH+++HED MM L++
Sbjct: 411 ---------PLREKGRTVFHCHIVEHEDRGMMGVLEV 438
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 175/447 (39%), Gaps = 81/447 (18%)
Query: 144 PTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLT 203
PT+VH HG +D + + T G Y + + + G YH H GLT
Sbjct: 59 PTIVHWHGFDVNWHNDAHPSFAITPG--------ESYNYSFDVVNRAGTYLYHPHPHGLT 110
Query: 204 RINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIH 263
G +G IV D + L G D PLV+ DR F +Y NP+
Sbjct: 111 AKQFYMGQLGLVIVE--DSGSDLGFKYGVN-DLPLVISDRRFIGGAPVY------NPTPM 161
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFT--NG----LRFIH 317
+ + G+A++VNG + YR R++N SNAR Y NG +R I
Sbjct: 162 -EMIAGFLGNAVLVNGVKDAVFKLSGGSYRLRLVNGSNARLYMLSIVKKNGDVVPMRLI- 219
Query: 318 VAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANG 377
A D +L RP+ LAP+E A+VV++ E L + P+ DP++ G
Sbjct: 220 -AVDQGFLARPIEVRALFLAPAERAEVVVELGEG----VYLLKNTPF-----DPMHLEMG 269
Query: 378 KVMKFIIKKNHE--LDTWRVPEKLIKYPSPNPSS-------ASRTRYIAMYEYTSDIDEP 428
M+ + + E + T+ V K P S +RTR A+
Sbjct: 270 HGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPTRTRRFALSL------SG 323
Query: 429 THLFINGKSY--EEPVTETPKAGTSEVWNVINLTEDN-HPLHIHLGLFVVLDQRELVKLE 485
ING + P+ E E+W ++N HP+H+H
Sbjct: 324 MQWTINGMFWNASNPLFEHVSVEGVELWEIVNDKASMPHPMHLH---------------- 367
Query: 486 EFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNA 545
F + + D+ + +++ A + + + G K+ + PG KI+V F
Sbjct: 368 GFPMWIIERKDSPR-QVAELAVDNRGRLPT-DLGLKDTVLIWPGETVKIVVNFDAKKRGQ 425
Query: 546 SYPFDPTAEPGYVYHCHVLDHEDNVMM 572
+PF HCH L+HED MM
Sbjct: 426 LFPF----------HCHNLEHEDGGMM 442
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 108/445 (24%), Positives = 173/445 (38%), Gaps = 96/445 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHL 431
A+G +P+ L P+ PS T ++
Sbjct: 295 AISASGA----------------LPDTLSSLPA-LPSLEGLTVRKLQLSMDGGANK---- 333
Query: 432 FINGKSYE--EPVTETPKAGTSEVWNVINLTEDN--HPLHIHLGLFVVLDQRELVKLEEF 487
ING++++ +P+ K G E W VI+ D HP HIH F +L +
Sbjct: 334 -INGQAFDMNKPMFAAAK-GQYERW-VISGVGDMMLHPFHIHGTQFRILSE--------- 381
Query: 488 KACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASY 547
GK + H GWK+ K+ G V+++LV+F++
Sbjct: 382 -------------------NGKP--PAAHRAGWKDTVKVE-GNVSEVLVKFNH------- 412
Query: 548 PFDPTAEPGYVYHCHVLDHEDNVMM 572
D E Y+ HCH+L+HED MM
Sbjct: 413 --DAPKEHAYMAHCHLLEHEDTGMM 435
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 109/479 (22%), Positives = 184/479 (38%), Gaps = 102/479 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGK------------------VMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRT 413
A+G V K + + LD + + KY + +
Sbjct: 295 AISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHS 354
Query: 414 RYIAMYEYTSDIDEPTHLF---------INGKSYE--EPVTETPKAGTSEVWNVINLTED 462
+ + + +++ H ING++++ +P+ K G E W VI+ D
Sbjct: 355 QMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAK-GQYERW-VISGVGD 411
Query: 463 N--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520
HP HIH F +L + GK + H GW
Sbjct: 412 MMLHPFHIHGTQFRILSE----------------------------NGKP--PAAHRAGW 441
Query: 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMMRPLKLIK 579
K+ K+ G V+++LV+F++ D E Y+ HCH+L+HED MM +++
Sbjct: 442 KDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMMLGFTVLQ 490
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 181/472 (38%), Gaps = 102/472 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGK------------------VMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRT 413
A+G V K + + LD + + KY + +
Sbjct: 295 AISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHS 354
Query: 414 RYIAMYEYTSDIDEPTHLF---------INGKSYE--EPVTETPKAGTSEVWNVINLTED 462
+ + + +++ H ING++++ +P+ K G E W VI+ D
Sbjct: 355 QMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAK-GQYERW-VISGVGD 411
Query: 463 N--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520
HP HIH F +L + GK + H GW
Sbjct: 412 MMLHPFHIHGTQFRILSE----------------------------NGKP--PAAHRAGW 441
Query: 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
K+ K+ G V+++LV+F++ D E Y+ HCH+L+HED MM
Sbjct: 442 KDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMM 483
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 181/472 (38%), Gaps = 102/472 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGK------------------VMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRT 413
A+G V K + + LD + + KY + +
Sbjct: 295 AISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHS 354
Query: 414 RYIAMYEYTSDIDEPTHLF---------INGKSYE--EPVTETPKAGTSEVWNVINLTED 462
+ + + +++ H ING++++ +P+ K G E W VI+ D
Sbjct: 355 QMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAK-GQYERW-VISGVGD 411
Query: 463 N--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520
HP HIH F +L + GK + H GW
Sbjct: 412 MLLHPFHIHGTQFRILSE----------------------------NGKP--PAAHRAGW 441
Query: 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
K+ K+ G V+++LV+F++ D E Y+ HCH+L+HED MM
Sbjct: 442 KDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHEDTGMM 483
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 173/439 (39%), Gaps = 95/439 (21%)
Query: 186 NMQQPG-NLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDR 243
N+ QP W+H H G T + GL G ++ ++ L LP D P++V D+
Sbjct: 102 NVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDK 160
Query: 244 SFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNAR 303
F DG I ++ +FGD ++ NG +P+ R R R++N NAR
Sbjct: 161 KFSADGQIDYQLDVMTAAV------GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNAR 214
Query: 304 FYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSE-----------SK 352
F ++ +A+D L PV +E + E +V+++ ++ S+
Sbjct: 215 SLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQ 274
Query: 353 SDVAILANDAPYPYPSGDPVN-DANGK------------------VMKFIIKKNHELDTW 393
+AI D P+P P+ A+G V K + + LD+
Sbjct: 275 MGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPSLDSS 334
Query: 394 RVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLF---------INGKSYE--EPV 442
KY + ++ + + +++ H ING++++ +P+
Sbjct: 335 GSQSLSEKYGDQAMAGMDHSQMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPM 393
Query: 443 TETPKAGTSEVWNVINLTEDN--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKC 500
K G E W VI+ D HP HIH F +L +
Sbjct: 394 FAAAK-GQYERW-VISGVGDMMLHPFHIHGTQFRILSE---------------------- 429
Query: 501 HISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYH 560
GK + H GWK+ K+ G V+++LV+F++ D E Y+ H
Sbjct: 430 ------NGKP--PAAHRAGWKDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAH 471
Query: 561 CHVLDHEDNVMMRPLKLIK 579
CH+L+HED MM +++
Sbjct: 472 CHLLEHEDTGMMLGFTVLQ 490
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 108/479 (22%), Positives = 184/479 (38%), Gaps = 102/479 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGK------------------VMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRT 413
A+G V K + + LD + + KY + +
Sbjct: 295 AISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHS 354
Query: 414 RYIAMYEYTSDIDEPTHLF---------INGKSYE--EPVTETPKAGTSEVWNVINLTED 462
+ + + +++ H ING++++ +P+ K G E W VI+ D
Sbjct: 355 QMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAK-GQYERW-VISGVGD 411
Query: 463 N--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520
HP HIH F +L + GK + H GW
Sbjct: 412 MMLHPFHIHGTQFRILSE----------------------------NGKP--PAAHRAGW 441
Query: 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMMRPLKLIK 579
K+ K+ G V+++LV+F++ D E Y+ HCH+L+H+D MM +++
Sbjct: 442 KDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHCHLLEHDDTGMMLGFTVLQ 490
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 108/479 (22%), Positives = 183/479 (38%), Gaps = 102/479 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGK------------------VMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRT 413
A+G V K + + LD + + KY + +
Sbjct: 295 AISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHS 354
Query: 414 RYIAMYEYTSDIDEPTHLF---------INGKSYE--EPVTETPKAGTSEVWNVINLTED 462
+ + + +++ H ING++++ +P+ K G E W VI+ D
Sbjct: 355 QMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAK-GQYERW-VISGVGD 411
Query: 463 N--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520
HP HIH F +L + GK + H GW
Sbjct: 412 MMLHPFHIHGTQFRILSE----------------------------NGKP--PAAHRAGW 441
Query: 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMMRPLKLIK 579
K+ K+ G V+++LV+F++ D E Y+ H H+L+HED MM +++
Sbjct: 442 KDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHSHLLEHEDTGMMLGFTVLQ 490
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 107/472 (22%), Positives = 180/472 (38%), Gaps = 102/472 (21%)
Query: 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
T +H HG E DG P K++ + Q W+H H G T
Sbjct: 70 TTLHWHGLEVPGEVDGGPQGII--------PPGGKRSVTLNVDQPAATCWFHPHQHGKTG 121
Query: 205 INLLAGLVGAYIVRHHDVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIH 263
+ GL G ++ ++ L LP D P++V D+ F DG I ++
Sbjct: 122 RQVAMGLAGLVVIEDDEI-LKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAV- 179
Query: 264 PQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
+FGD ++ NG +P+ R R R++N NAR F ++ +A+D
Sbjct: 180 -----GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 234
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFSE-----------SKSDVAILANDAPYPYPSGDPV 372
L PV +E + E +V+++ ++ S+ +AI D P+P P+
Sbjct: 235 LLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPI 294
Query: 373 N-DANGK------------------VMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRT 413
A+G V K + + LD + + KY + +
Sbjct: 295 AISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHS 354
Query: 414 RYIAMYEYTSDIDEPTHLF---------INGKSYE--EPVTETPKAGTSEVWNVINLTED 462
+ + + +++ H ING++++ +P+ K G E W VI+ D
Sbjct: 355 QMMGHMGH-GNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAK-GQYERW-VISGVGD 411
Query: 463 N--HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520
HP HIH F +L + GK + H GW
Sbjct: 412 MMLHPFHIHGTQFRILSE----------------------------NGKP--PAAHRAGW 441
Query: 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMM 572
K+ K+ G V+++LV+F++ D E Y+ H H+L+H+D MM
Sbjct: 442 KDTVKVE-GNVSEVLVKFNH---------DAPKEHAYMAHSHLLEHQDTGMM 483
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 111/497 (22%), Positives = 193/497 (38%), Gaps = 86/497 (17%)
Query: 96 TATVPGPTIEALHGIDT-YVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGID 154
T + IE + G T + T+ +P+ I ++ + + K T +H HG
Sbjct: 54 TLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV 113
Query: 155 EPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQ-QPGNLWYHDHAMGLTRINLLAGLVG 213
P+ DG+ + AG ++ Y + Q G WYH H + GL G
Sbjct: 114 PPDQDGSPHDPILAG--------EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAG 165
Query: 214 AYIVR-HHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFG 272
A++++ D + L+ ++ L++ D + I N+ + W G
Sbjct: 166 AFVIKAKKDALSHLK-------EKDLMISDLRLDENAQIPNNNLND-------WLNGREG 211
Query: 273 DAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTN 332
+ +++NG+ P++ + + R RI NA+ AR+ G +FI V D + + +
Sbjct: 212 EFVLINGQFKPKIKLATNE-RIRIYNATAARYLNLRI-QGAKFILVGTDGGLIEKTIYKE 269
Query: 333 ETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDT 392
E L+P+ +V+ID + D A Y + N F+ N + +
Sbjct: 270 ELFLSPASRVEVLID---APKDGNFKLESAYYDRDKMMVKEEPN---TLFLANINLKKEN 323
Query: 393 WRVPEKL-IKYPSPNPSSASRT----RYIAMY------EYTSDIDEPTHLFINGKSYE-E 440
+P+ L I PS P ++ M+ E I + IN KSY+ +
Sbjct: 324 VELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSEGELKIALASMFLINRKSYDLK 383
Query: 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKC 500
+ + K G E W VIN + +HP HIH F ++ + K++ KA D I
Sbjct: 384 RIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQ--KAEFRALRDTINV 441
Query: 501 HISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYH 560
++ R L + + KG + +YH
Sbjct: 442 RPNEELR---LRMKQDFKGLR------------------------------------MYH 462
Query: 561 CHVLDHEDNVMMRPLKL 577
CH+L+HED MM L++
Sbjct: 463 CHILEHEDLGMMGNLEV 479
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 188 QQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSG---DEFDRPLVVFDRS 244
Q LWYH + T + GL G ++V +V L +P+ D+F P+++ D+
Sbjct: 107 QNAATLWYHANTPNRTAQQVYNGLAGMWLV-EDEVSKSLPIPNHYGVDDF--PVIIQDKR 163
Query: 245 FRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARF 304
G+ N G+ + GD ++VNG P + V R R R++NASN+R
Sbjct: 164 LDNFGTPEYNEPGSG---------GFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNSRR 214
Query: 305 YRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDA 362
Y+ +G ++ D +L PV + LAP E ++++D S +V+I +A
Sbjct: 215 YQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGD-EVSITCGEA 271
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 38/190 (20%)
Query: 175 PTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEF 234
P ++TY + +Q G WYH H + G +V + P LP +
Sbjct: 118 PKGGQRTYRWR-ARQYGTSWYHSH---------FSAQYGNGVVGTIQINGPASLP----Y 163
Query: 235 DRPLVVF---DRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA---------W 282
D L VF D +R + + N P F D +++NG A +
Sbjct: 164 DIDLGVFPITDYYYRAADDLVHFTQNNAPP---------FSDNVLINGTAVNPNTGEGQY 214
Query: 283 PRMTVR-RRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEI 341
+T+ +++R RI+N S ++ N + +AAD + + + LA +
Sbjct: 215 ANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTV-IAADMVPV-NAMTVDSLFLAVGQR 272
Query: 342 ADVVIDFSES 351
DVVID S +
Sbjct: 273 YDVVIDASRA 282
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 38/190 (20%)
Query: 175 PTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEF 234
P ++TY + +Q G WYH H + G +V + P LP +
Sbjct: 118 PKGGQRTYRWR-ARQYGTSWYHSH---------FSAQYGNGVVGTIQINGPASLP----Y 163
Query: 235 DRPLVVF---DRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA---------W 282
D L VF D +R + + N P F D +++NG A +
Sbjct: 164 DIDLGVFPITDYYYRAADDLVHFTQNNAPP---------FSDNVLINGTAVNPNTGEGQY 214
Query: 283 PRMTVR-RRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEI 341
+T+ +++R RI+N S ++ N + +AAD + + + LA +
Sbjct: 215 ANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTV-IAADMVPV-NAMTVDSLFLAVGQR 272
Query: 342 ADVVIDFSES 351
DVVID S +
Sbjct: 273 YDVVIDASRA 282
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 44/239 (18%)
Query: 128 WDPTIPTAIPRKKKGIPTVVHLHGGIDEPESD--GNANSWFTAGFKEKGPTWTKKTYHYH 185
W T+ + T +H HG I + +++ AN KG ++TY +
Sbjct: 73 WGDTVEVTVINNLVTNGTSIHWHG-IXQKDTNLHDGANGVTECPIPPKG---GQRTYRWR 128
Query: 186 NMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVF---D 242
+Q G WYH H + G +V + P LP +D L VF D
Sbjct: 129 -ARQYGTSWYHSH---------FSAQYGNGVVGTIQINGPASLP----YDIDLGVFPITD 174
Query: 243 RSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA---------WPRMTVR-RRKY 292
+R + + N P F D +++NG A + +T+ +++
Sbjct: 175 YYYRAADDLVHFTQNNAPP---------FSDNVLINGTAVNPNTGEGQYANVTLTPGKRH 225
Query: 293 RFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSES 351
R RI+N S ++ N + +AAD + + + LA + DVVID S +
Sbjct: 226 RLRILNTSTENHFQVSLVNHTMTV-IAADMVPV-NAMTVDSLFLAVGQRYDVVIDASRA 282
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 31/150 (20%)
Query: 87 VYAYGTSKHTATVPGPTIEALHG----IDTYVTWQNHLPSK-HILPWDPTIPTAIPRKKK 141
+Y YG + ATVPGP +E G ID T L H + +D +
Sbjct: 43 LYGYGLAPGGATVPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYDVNSDGTLMNGSA 102
Query: 142 GIPTVVHLHGGIDEPESDGNANSWFT-AGFKEKGPTWTKKTYHYHNMQQPGNLW-YHDHA 199
+P + +W + G++ +W + T Y W YHDHA
Sbjct: 103 VMPGQTRRY-------------TWRSHVGYRRADGSWAEGTAGY---------WHYHDHA 140
Query: 200 MGLTRI--NLLAGLVGAYIVRHHDVETPLR 227
MG +L GL GA +VR P R
Sbjct: 141 MGTEHGTEGVLKGLYGALVVRRQGDLLPKR 170
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 161 NANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
A WF GF+ + K+ + MQ+ G L+Y D + R
Sbjct: 133 TAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNR 176
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 161 NANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR 204
A WF GF+ + K+ + MQ+ G L+Y D + R
Sbjct: 115 TAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNR 158
>pdb|3MKI|A Chain A, Crystal Structure Of Ketosteroid Isomerase D38ed99n From
Pseudomonas Testosteroni (Tksi)
pdb|3MKI|B Chain B, Crystal Structure Of Ketosteroid Isomerase D38ed99n From
Pseudomonas Testosteroni (Tksi)
pdb|3MKI|C Chain C, Crystal Structure Of Ketosteroid Isomerase D38ed99n From
Pseudomonas Testosteroni (Tksi)
pdb|3MKI|D Chain D, Crystal Structure Of Ketosteroid Isomerase D38ed99n From
Pseudomonas Testosteroni (Tksi)
Length = 125
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + EEPV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEEPVGSEPRSGTAAI 51
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 96/266 (36%), Gaps = 50/266 (18%)
Query: 90 YGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHL 149
+ T VP P I + G D V N +P +H
Sbjct: 22 FHTFAFNGQVPAPLIHVMEGDDVTVNVTN---------------------MTTLPHTIHW 60
Query: 150 HGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINL 207
HG + +SDG ++ T E G T+T K + G +WYH H + +
Sbjct: 61 HGMLQRGTWQSDGVPHA--TQHAIEPGDTFTYK----FKAEPAGTMWYHCH-VNVNEHVT 113
Query: 208 LAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQ 267
+ G+ G IV + + PL + D L++ D +++S N P
Sbjct: 114 MRGMWGPLIV---EPKNPLPIEKTVTKDYILMLSD---------WVSSWANKPG--EGGI 159
Query: 268 PEYFGDAIIVNGKAWPRMTVRRRK----YRFRIINASNARFYRFFFTNGLRFIHVAADSA 323
P D +N K++P R K R R+I A + T+G D
Sbjct: 160 PGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLIGAGD--HVHAIHTHGHISQIAFKDGF 217
Query: 324 YLGRPVVTNETLLAPSEIADVVIDFS 349
L +P+ + L+ P E DV+++
Sbjct: 218 PLDKPIKGDTVLIGPGERYDVILNMD 243
>pdb|1BUQ|A Chain A, Solution Structure Of Delta-5-3-Ketosteroid Isomerase
Complexed With The Steroid
19-Nortestosterone-Hemisuccinate
pdb|1BUQ|B Chain B, Solution Structure Of Delta-5-3-Ketosteroid Isomerase
Complexed With The Steroid
19-Nortestosterone-Hemisuccinate
Length = 125
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + E+PV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEDPVGSEPRSGTAAI 51
>pdb|3UNL|A Chain A, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
pdb|3UNL|B Chain B, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
pdb|3UNL|C Chain C, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
pdb|3UNL|D Chain D, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
Length = 125
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + E+PV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEDPVGSEPRSGTAAI 51
>pdb|8CHO|A Chain A, Crystal Structure Of Delta5-3-Ketosteroid Isomerase From
Pseudomonas Testosteroni
Length = 125
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + E+PV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEDPVGSEPRSGTAAI 51
>pdb|3M8C|A Chain A, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi) With Equilenin Bound
pdb|3M8C|B Chain B, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi) With Equilenin Bound
pdb|3M8C|C Chain C, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi) With Equilenin Bound
pdb|3M8C|D Chain D, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi) With Equilenin Bound
pdb|3NXJ|A Chain A, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi)
pdb|3NXJ|B Chain B, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi)
pdb|3NHX|A Chain A, Crystal Structure Of Ketosteroid Isomerase D99n From
Pseudomonas Testosteroni (Tksi) With
4-Androstene-3,17-Dione Bound
Length = 125
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + E+PV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEDPVGSEPRSGTAAI 51
>pdb|1ISK|A Chain A, 3-Oxo-Delta5-Steroid Isomerase, Nmr, 20 Structures
pdb|1ISK|B Chain B, 3-Oxo-Delta5-Steroid Isomerase, Nmr, 20 Structures
Length = 125
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + E+PV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEDPVGSEPRSGTAAI 51
>pdb|1OCV|A Chain A, The F116w Mutant Structure Of Ketosteroid Isomerase From
Comamonas Testosteroni
pdb|1OCV|B Chain B, The F116w Mutant Structure Of Ketosteroid Isomerase From
Comamonas Testosteroni
pdb|1OCV|C Chain C, The F116w Mutant Structure Of Ketosteroid Isomerase From
Comamonas Testosteroni
pdb|1OCV|D Chain D, The F116w Mutant Structure Of Ketosteroid Isomerase From
Comamonas Testosteroni
Length = 125
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEV 453
+P +A RY+A D+D LF + + E+PV P++GT+ +
Sbjct: 3 TPEHMTAVVQRYVAALN-AGDLDGIVALFADDATVEDPVGSEPRSGTAAI 51
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 53/148 (35%), Gaps = 49/148 (33%)
Query: 89 AYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVH 148
YG K AT+PGP IE G ++ ++N + +P +H
Sbjct: 29 GYGLEKGKATIPGPLIELNEGDTLHIEFENTMD---------------------VPVSLH 67
Query: 149 LHGGIDEPESDGNANS-------------WFT--AGFKEKGPTWTKKTYHYHNMQQPGNL 193
+HG E SDG S W T G + G TW + Y
Sbjct: 68 VHGLDYEISSDGTKQSRSDVEPGGTRTYTWRTHVPGRRADG-TWRAGSAGY--------- 117
Query: 194 W-YHDHAMGLTR--INLLAGLVGAYIVR 218
W YHDH +G + GL G IVR
Sbjct: 118 WHYHDHVVGTEHGTGGIRNGLYGPVIVR 145
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 41/140 (29%)
Query: 100 PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDE--PE 157
PGPTI A G V N L ++ + V+H HG + P
Sbjct: 32 PGPTIRANAGDSVVVELTNKLHTEGV--------------------VIHWHGILQRGTPW 71
Query: 158 SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIV 217
+DG TA + + ++ + PG +YH H +G+ R AGL G+ IV
Sbjct: 72 ADG------TASISQCAINPGETFFYNFTVDNPGTFFYHGH-LGMQR---SAGLYGSLIV 121
Query: 218 R---------HHDVETPLRL 228
H+D E L L
Sbjct: 122 DPPQGKKEPFHYDGEINLLL 141
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 87 VYAYGTSKHTAT-VPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAI 136
V +YG H A +PG + + +V W N LP L D + TA+
Sbjct: 99 VLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAV 149
>pdb|1EYR|A Chain A, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
pdb|1EYR|B Chain B, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
pdb|1EZI|A Chain A, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
pdb|1EZI|B Chain B, Structure Of A Sialic Acid Activating Synthetase, Cmp
Acylneuraminate Synthetase In The Presence And Absence
Of Cdp
Length = 228
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 209 AGLVGAYIVRHHDVETPLRLPSGD--------EFDRPLVVFDRSFRTDGSIYMNSTGN 258
+V A HH ++T L++ +G+ + ++P ++FR +G+IY+N T +
Sbjct: 128 GSVVSACPXEHHPLKTLLQINNGEYAPXRHLSDLEQPRQQLPQAFRPNGAIYINDTAS 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,039,651
Number of Sequences: 62578
Number of extensions: 937776
Number of successful extensions: 2047
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 72
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)