Query 008071
Match_columns 579
No_of_seqs 311 out of 2203
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 19:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10965 multicopper oxidase; 100.0 2.1E-93 4.5E-98 777.9 51.7 468 4-578 1-523 (523)
2 PRK10883 FtsI repressor; Provi 100.0 2.7E-90 5.8E-95 747.2 50.0 460 3-579 2-469 (471)
3 PLN02835 oxidoreductase 100.0 4.3E-74 9.4E-79 628.3 49.2 418 66-578 31-512 (539)
4 TIGR01480 copper_res_A copper- 100.0 2.9E-74 6.2E-79 632.0 46.3 413 66-578 47-587 (587)
5 TIGR03389 laccase laccase, pla 100.0 1.4E-72 3E-77 621.1 44.9 423 65-577 4-519 (539)
6 PLN02354 copper ion binding / 100.0 2.9E-72 6.2E-77 614.8 45.7 418 66-578 29-519 (552)
7 PLN02168 copper ion binding / 100.0 6.2E-72 1.3E-76 609.6 45.4 420 66-577 28-515 (545)
8 PLN02991 oxidoreductase 100.0 2.4E-71 5.3E-76 603.9 45.6 420 66-578 30-511 (543)
9 PLN02792 oxidoreductase 100.0 9.3E-71 2E-75 600.2 42.3 421 66-578 18-504 (536)
10 TIGR03388 ascorbase L-ascorbat 100.0 1E-70 2.2E-75 606.0 42.7 425 66-577 3-523 (541)
11 PLN00044 multi-copper oxidase- 100.0 2.9E-70 6.3E-75 598.7 44.7 426 66-578 29-534 (596)
12 PLN02604 oxidoreductase 100.0 7.6E-70 1.7E-74 600.8 45.9 425 66-577 26-546 (566)
13 TIGR03390 ascorbOXfungal L-asc 100.0 2.7E-70 5.9E-75 601.0 41.3 423 66-578 10-532 (538)
14 PLN02191 L-ascorbate oxidase 100.0 1.8E-69 4E-74 596.6 46.1 429 66-576 25-545 (574)
15 COG2132 SufI Putative multicop 100.0 1.3E-64 2.8E-69 548.9 44.3 405 67-578 35-449 (451)
16 KOG1263 Multicopper oxidases [ 100.0 9E-60 1.9E-64 510.5 37.1 408 84-578 46-536 (563)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.3E-43 2.7E-48 364.6 26.5 246 65-362 28-280 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1.9E-31 4.1E-36 235.3 9.7 112 72-220 3-116 (117)
19 PF07731 Cu-oxidase_2: Multico 99.9 1.4E-25 2.9E-30 204.8 9.3 107 436-578 28-135 (138)
20 PF00394 Cu-oxidase: Multicopp 99.8 7.4E-19 1.6E-23 164.3 11.1 119 235-361 2-136 (159)
21 TIGR03095 rusti_cyanin rusticy 99.6 4.6E-15 1E-19 136.0 13.8 94 99-218 49-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.5 1.6E-12 3.6E-17 134.2 23.9 222 272-578 47-296 (311)
23 TIGR01480 copper_res_A copper- 99.5 1.5E-13 3.2E-18 152.3 11.1 101 84-218 484-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.0 1.5E-09 3.3E-14 96.6 10.9 93 65-201 27-122 (135)
25 PLN02604 oxidoreductase 98.7 2.7E-08 5.9E-13 111.1 6.8 98 429-578 44-143 (566)
26 TIGR03389 laccase laccase, pla 98.5 1.4E-05 3.1E-10 89.1 23.4 204 273-539 23-252 (539)
27 PLN02835 oxidoreductase 98.5 2.7E-05 5.9E-10 86.5 24.8 201 273-539 49-267 (539)
28 TIGR03388 ascorbase L-ascorbat 98.5 1.2E-05 2.6E-10 89.7 22.2 204 273-539 21-268 (541)
29 PLN02354 copper ion binding / 98.5 2.7E-05 5.8E-10 86.7 23.3 204 273-539 47-272 (552)
30 PRK10965 multicopper oxidase; 98.4 7.3E-06 1.6E-10 90.6 18.2 76 275-352 414-496 (523)
31 PLN02792 oxidoreductase 98.4 4.5E-05 9.8E-10 84.5 23.8 204 273-539 36-258 (536)
32 PF07731 Cu-oxidase_2: Multico 98.3 6.6E-07 1.4E-11 81.3 5.4 91 99-218 31-135 (138)
33 PLN02168 copper ion binding / 98.3 8.3E-05 1.8E-09 82.6 22.3 201 273-539 46-266 (545)
34 PLN02991 oxidoreductase 98.3 0.00013 2.8E-09 80.9 22.9 202 273-539 48-267 (543)
35 PRK02710 plastocyanin; Provisi 98.3 1.6E-05 3.5E-10 70.5 12.4 74 101-218 46-119 (119)
36 TIGR03390 ascorbOXfungal L-asc 98.2 0.00016 3.4E-09 80.7 22.7 203 273-539 28-264 (538)
37 PLN02191 L-ascorbate oxidase 98.2 0.00013 2.7E-09 81.9 21.1 205 272-539 42-291 (574)
38 PF07732 Cu-oxidase_3: Multico 98.2 2.2E-06 4.7E-11 75.8 5.0 99 429-578 15-114 (117)
39 PRK10883 FtsI repressor; Provi 98.2 0.00014 3E-09 79.8 19.8 200 273-539 66-286 (471)
40 TIGR02656 cyanin_plasto plasto 98.0 2.3E-05 4.9E-10 67.2 8.7 83 101-218 16-99 (99)
41 PF00394 Cu-oxidase: Multicopp 98.0 3.8E-05 8.3E-10 71.7 9.7 101 429-575 37-153 (159)
42 COG2132 SufI Putative multicop 98.0 0.00019 4.2E-09 78.5 16.6 86 270-359 340-431 (451)
43 PLN00044 multi-copper oxidase- 97.9 0.0025 5.5E-08 71.4 22.8 205 273-539 49-282 (596)
44 TIGR02657 amicyanin amicyanin. 97.6 0.00045 9.8E-09 57.0 9.1 74 101-218 10-83 (83)
45 PF13473 Cupredoxin_1: Cupredo 97.5 0.00014 3E-09 62.8 5.2 70 102-217 35-104 (104)
46 PF00127 Copper-bind: Copper b 97.5 0.0002 4.2E-09 61.3 5.7 37 170-218 63-99 (99)
47 TIGR03095 rusti_cyanin rusticy 97.4 0.00038 8.3E-09 64.0 7.0 38 430-470 43-81 (148)
48 TIGR02656 cyanin_plasto plasto 97.4 0.00055 1.2E-08 58.6 6.9 83 440-577 15-98 (99)
49 TIGR02375 pseudoazurin pseudoa 97.2 0.0023 5E-08 56.2 9.2 76 101-221 14-90 (116)
50 COG3794 PetE Plastocyanin [Ene 97.2 0.0019 4E-08 57.5 8.5 82 86-219 47-128 (128)
51 PRK02888 nitrous-oxide reducta 97.2 0.0014 3E-08 72.6 9.3 79 102-218 555-633 (635)
52 TIGR03102 halo_cynanin halocya 97.1 0.0066 1.4E-07 53.3 11.0 75 101-218 41-115 (115)
53 KOG1263 Multicopper oxidases [ 97.1 0.071 1.5E-06 59.4 21.7 204 272-539 47-274 (563)
54 TIGR03094 sulfo_cyanin sulfocy 96.8 0.013 2.8E-07 54.5 10.4 100 102-220 85-187 (195)
55 PF06525 SoxE: Sulfocyanin (So 96.7 0.025 5.5E-07 53.7 12.4 109 86-220 74-188 (196)
56 TIGR03096 nitroso_cyanin nitro 95.7 0.035 7.7E-07 49.8 7.1 31 440-470 59-89 (135)
57 PF00127 Copper-bind: Copper b 95.2 0.075 1.6E-06 45.3 7.0 38 522-577 60-98 (99)
58 PRK02710 plastocyanin; Provisi 95.0 0.082 1.8E-06 46.8 7.0 73 440-577 45-118 (119)
59 COG4454 Uncharacterized copper 94.5 0.3 6.6E-06 44.6 9.4 99 98-218 59-157 (158)
60 COG4454 Uncharacterized copper 94.2 0.21 4.5E-06 45.6 7.7 96 440-578 61-157 (158)
61 PF13473 Cupredoxin_1: Cupredo 93.5 0.25 5.5E-06 42.4 6.7 31 440-470 33-63 (104)
62 TIGR02657 amicyanin amicyanin. 92.5 0.39 8.4E-06 39.5 6.2 32 435-469 5-36 (83)
63 PF10518 TAT_signal: TAT (twin 89.6 0.39 8.4E-06 30.3 2.7 21 3-23 1-21 (26)
64 TIGR02375 pseudoazurin pseudoa 86.0 2.4 5.1E-05 37.3 6.4 24 554-579 64-88 (116)
65 PF00116 COX2: Cytochrome C ox 85.1 4.9 0.00011 35.5 8.0 75 101-217 45-119 (120)
66 PRK02888 nitrous-oxide reducta 84.2 3.8 8.3E-05 46.1 8.4 76 440-578 553-633 (635)
67 PF12690 BsuPI: Intracellular 83.0 11 0.00023 31.0 8.6 68 291-359 3-81 (82)
68 COG3794 PetE Plastocyanin [Ene 82.6 5.6 0.00012 35.6 7.3 74 440-577 52-126 (128)
69 TIGR03102 halo_cynanin halocya 82.6 6.2 0.00013 34.7 7.4 34 526-577 80-114 (115)
70 PF08802 CytB6-F_Fe-S: Cytochr 79.6 2.5 5.5E-05 29.4 3.1 22 3-24 5-26 (39)
71 TIGR02866 CoxB cytochrome c ox 76.5 11 0.00023 36.6 7.8 79 101-221 116-194 (201)
72 PRK10378 inactive ferrous ion 74.3 36 0.00078 36.2 11.5 76 101-221 43-119 (375)
73 PF10399 UCR_Fe-S_N: Ubiquitin 72.6 4.4 9.5E-05 28.6 2.9 22 3-24 8-29 (41)
74 TIGR02695 azurin azurin. Azuri 71.8 27 0.00058 31.0 8.3 39 170-216 84-124 (125)
75 TIGR02811 formate_TAT formate 71.2 4 8.8E-05 32.0 2.7 19 3-21 8-26 (66)
76 COG1622 CyoA Heme/copper-type 71.1 12 0.00026 37.5 6.8 79 101-221 136-214 (247)
77 TIGR01409 TAT_signal_seq Tat ( 65.2 5.5 0.00012 25.7 2.0 20 4-23 1-20 (29)
78 PF06525 SoxE: Sulfocyanin (So 63.6 31 0.00066 33.2 7.5 111 430-578 75-186 (196)
79 TIGR03094 sulfo_cyanin sulfocy 62.4 80 0.0017 30.0 9.7 38 430-468 74-111 (195)
80 COG4263 NosZ Nitrous oxide red 50.5 22 0.00048 38.2 4.6 79 102-218 558-636 (637)
81 TIGR02695 azurin azurin. Azuri 44.4 43 0.00092 29.8 4.7 76 283-358 16-108 (125)
82 PF00116 COX2: Cytochrome C ox 43.0 1.2E+02 0.0027 26.6 7.6 29 441-470 45-73 (120)
83 PF12992 DUF3876: Domain of un 40.3 76 0.0016 26.9 5.4 30 269-300 14-45 (95)
84 PRK10882 hydrogenase 2 protein 39.5 26 0.00055 36.7 3.1 18 4-21 1-18 (328)
85 PF14344 DUF4397: Domain of un 33.1 3.2E+02 0.0069 23.5 10.6 17 293-309 3-20 (122)
86 PRK13474 cytochrome b6-f compl 32.8 35 0.00077 32.3 2.6 20 3-22 11-30 (178)
87 PRK07474 sulfur oxidation prot 32.7 2E+02 0.0043 26.6 7.4 21 1-21 5-25 (154)
88 PRK13616 lipoprotein LpqB; Pro 31.1 64 0.0014 36.7 4.7 31 1-31 1-31 (591)
89 smart00758 PA14 domain in bact 29.1 2.6E+02 0.0056 24.5 7.6 64 284-353 51-115 (136)
90 PRK09898 hypothetical protein; 29.0 28 0.0006 33.8 1.3 20 3-22 12-31 (208)
91 PF07691 PA14: PA14 domain; I 28.6 3.9E+02 0.0083 23.4 8.7 63 284-352 53-122 (145)
92 PF04744 Monooxygenase_B: Mono 28.5 4.9E+02 0.011 27.7 10.1 15 170-187 320-334 (381)
93 PF11614 FixG_C: IG-like fold 26.7 2.4E+02 0.0053 24.3 6.8 48 291-349 34-83 (118)
94 PRK15078 polysaccharide export 24.7 90 0.0019 33.4 4.3 21 99-119 80-100 (379)
95 PRK10378 inactive ferrous ion 22.8 3.4E+02 0.0074 29.0 8.0 32 431-464 34-65 (375)
96 PRK15396 murein lipoprotein; P 22.3 77 0.0017 25.8 2.4 23 4-26 1-24 (78)
97 PF05938 Self-incomp_S1: Plant 22.1 1.8E+02 0.0039 24.8 5.0 27 170-200 30-56 (110)
98 PRK14993 tetrathionate reducta 21.9 72 0.0016 31.9 2.7 16 3-18 2-17 (244)
99 PF12318 FAD-SLDH: Membrane bo 21.0 69 0.0015 30.1 2.2 13 110-122 128-140 (168)
No 1
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.1e-93 Score=777.88 Aligned_cols=468 Identities=25% Similarity=0.364 Sum_probs=365.3
Q ss_pred hhHHHHHHHHHHHHHHHHh--hhccccccCccCCCCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCC
Q 008071 4 VERVLFLYLMFLAAARVMI--SSAARTEERLINPSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRD 81 (579)
Q Consensus 4 ~~r~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 81 (579)
|+||+||.++++++++.++ +++...+ + ...+||+||.+++.. . ..++|++++.++++..+
T Consensus 1 ~~Rr~~l~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~lp~p~~l~~~~---~-----~~~~L~~~~~~~~~~~~ 62 (523)
T PRK10965 1 MQRRDFLKLSAALGAASALPLWSRAAFA-----A-----ERPALPIPPLLTPDA---R-----GRIQLTIQAGQSSFAGK 62 (523)
T ss_pred CcHHHHHHhhHHhhhhhhcccccccccc-----c-----cCCCCCCCccccCCC---C-----ccEEEEEEEEEEEecCC
Confidence 6899999976555443333 2111111 1 125899999886632 1 25788888999999876
Q ss_pred CCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCC
Q 008071 82 LPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGN 161 (579)
Q Consensus 82 ~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~ 161 (579)
. .+.+|+|| |++||||||+++||+|+|+|+|+|++ +|+|||||+++++.+||+
T Consensus 63 ~-~t~~~~yN-----g~~PGPtIr~~~Gd~v~v~~~N~L~~---------------------~ttiHwHGl~~~~~~DG~ 115 (523)
T PRK10965 63 T-ATATWGYN-----GNLLGPAVRLQRGKAVTVDITNQLPE---------------------ETTLHWHGLEVPGEVDGG 115 (523)
T ss_pred c-eeEEEEEC-----CCCCCceEEEECCCEEEEEEEECCCC---------------------CccEEcccccCCCccCCC
Confidence 5 67899997 99999999999999999999999998 899999999999999998
Q ss_pred CCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCC-CCceeEEE
Q 008071 162 ANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGD-EFDRPLVV 240 (579)
Q Consensus 162 p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~-~~e~~lvl 240 (579)
| ||+|.||++| +|+|+++|++||||||||.|+.++.|+++||+|+|||+|++ +..+.+|+.+ .+|++|+|
T Consensus 116 p-----q~~I~PG~s~---~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~-~~~~~lp~~~~~~d~~lvl 186 (523)
T PRK10965 116 P-----QGIIAPGGKR---TVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDE-SLKLGLPKQWGVDDIPVIL 186 (523)
T ss_pred C-----CCCCCCCCEE---EEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCcc-ccccCCcccCCCceeeEEE
Confidence 6 6789999999 99999998899999999999999999999999999999876 5556677733 46999999
Q ss_pred EeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEec
Q 008071 241 FDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAA 320 (579)
Q Consensus 241 ~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~ 320 (579)
|||.++.+|++.|.... ..+..++.||.++|||+.+|++.+++++|||||||+|++++|.|++.+||+|+|||+
T Consensus 187 qD~~~~~~g~~~~~~~~------~~~~~g~~gd~~lVNG~~~p~~~v~~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~ 260 (523)
T PRK10965 187 QDKRFSADGQIDYQLDV------MTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNLATSDGRPLYVIAS 260 (523)
T ss_pred EeeeeCCCCceeccccc------cccccCccCCeEEECCcccceeecCCCEEEEEEEeccCCceEEEEEcCCceEEEEEe
Confidence 99999999987654211 112345679999999999999999889999999999999999999977999999999
Q ss_pred CCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCC--CCCCCCccEEEEEecCCCCCCCCCCCC
Q 008071 321 DSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDP--VNDANGKVMKFIIKKNHELDTWRVPEK 398 (579)
Q Consensus 321 DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~--~~~~~~~v~~~~v~~~~~~~~~~~P~~ 398 (579)
||+++.+|+.+++|.|+|||||||+|++++. +.+.|.+..... .|.. .......+++|.+.+. .+...+|+.
T Consensus 261 DG~~l~~P~~v~~l~lapGeR~dvlv~~~~~--~~~~l~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~--~~~~~~P~~ 334 (523)
T PRK10965 261 DGGLLAEPVKVSELPILMGERFEVLVDTSDG--KAFDLVTLPVSQ--MGMALAPFDKPLPVLRIQPLLI--SASGTLPDS 334 (523)
T ss_pred CCCcccCccEeCeEEECccceEEEEEEcCCC--ceEEEEEecccC--cccccccCCCceeEEEEeccCc--CCCCcCChh
Confidence 9999999999999999999999999999874 478887753211 1111 1112346788876532 244568888
Q ss_pred CCCCCCCCCCCCccceEEEEEee--ec---------C------CC-------------------------Cc-----ceE
Q 008071 399 LIKYPSPNPSSASRTRYIAMYEY--TS---------D------ID-------------------------EP-----THL 431 (579)
Q Consensus 399 L~~~~~~~~~~~~~~r~~~l~~~--~~---------~------~g-------------------------~~-----~~~ 431 (579)
|.++++.+.......|++.|... .+ . .+ .+ ..|
T Consensus 335 l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (523)
T PRK10965 335 LASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHAN 414 (523)
T ss_pred hccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 87666433222223343433110 00 0 00 00 015
Q ss_pred EEcCeecCC-CcccccCCCCeEEEEEEeCCC-CCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCc
Q 008071 432 FINGKSYEE-PVTETPKAGTSEVWNVINLTE-DNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGK 509 (579)
Q Consensus 432 ~iNg~~~~~-~~~~~~~~G~~~~w~l~N~~~-~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~ 509 (579)
+|||+.|+. ...+.+++|++|+|+|+|.+. +.|||||||++||||+++ |
T Consensus 415 ~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~----------------------------g- 465 (523)
T PRK10965 415 KINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSEN----------------------------G- 465 (523)
T ss_pred cCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEec----------------------------C-
Confidence 899999984 455689999999999999985 689999999999999994 4
Q ss_pred ccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 510 KLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 510 ~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.++...+++|||||.|+| +.++|+++|+. . ++++| ||||||||+|||+|||++|+|+
T Consensus 466 -~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~--~--------~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 466 -KPPAAHRAGWKDTVRVEG-GRSEVLVKFDH--D--------APKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred -CCCCccccccccEEEECC-cEEEEEEEecC--C--------CCCCCCEEEEeCchhhhccCccceeEeC
Confidence 234456789999999988 78999999982 1 34677 9999999999999999999995
No 2
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.7e-90 Score=747.22 Aligned_cols=460 Identities=22% Similarity=0.325 Sum_probs=353.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhccccccCccCCCCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCC
Q 008071 3 IVERVLFLYLMFLAAARVMISSAARTEERLINPSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDL 82 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~ 82 (579)
.|+||+||+.+++++.+.+.++..+. . .. ..+|++||.+++.. + ..++|++++..+++..+.
T Consensus 2 ~~~rr~~l~~~~~~~~~~~~~~~~~~------~---~~-~~~l~~p~~l~~~~----~----~~~~l~~~~~~~~~~~g~ 63 (471)
T PRK10883 2 SLSRRQFIQASGIALCAGALPLRARA------A---GQ-QQPLPVPPLLESRR----G----QPLFLTLQRAHWSFTGGT 63 (471)
T ss_pred CccHHHHhhhhhhhhhhccccchhhc------c---CC-CCCCCCCccccCCC----C----CcEEEEEEEeEEEecCCc
Confidence 48999998754333221111111100 0 11 25899999886532 2 136899999999997765
Q ss_pred CCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCC
Q 008071 83 PPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNA 162 (579)
Q Consensus 83 ~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p 162 (579)
.+++|+|| |++||||||+++||+|+|+++|+|++ +|++||||+++++.+||.+
T Consensus 64 -~~~v~~~n-----g~~pGPtir~~~Gd~v~v~v~N~L~~---------------------~ttiHwHGl~~~~~~~~g~ 116 (471)
T PRK10883 64 -KASVWGIN-----GRYLGPTIRVWKGDDVKLIYSNRLTE---------------------PVSMTVSGLQVPGPLMGGP 116 (471)
T ss_pred -eeeEEEEC-----CcccCCeEEEECCCEEEEEEEeCCCC---------------------CCceeECCccCCCCCCCCc
Confidence 78999997 99999999999999999999999998 8999999999998844443
Q ss_pred CccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCC-CCceeEEEE
Q 008071 163 NSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGD-EFDRPLVVF 241 (579)
Q Consensus 163 ~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~-~~e~~lvl~ 241 (579)
. ++|.||++| +|+|+++|++||||||+|.++.++.|+++||+|+|||+|+. +.++.+|..| .+|++|+||
T Consensus 117 ~-----~~I~PG~~~---~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~-~~~~~~p~~~~~~d~~l~l~ 187 (471)
T PRK10883 117 A-----RMMSPNADW---APVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEV-SKSLPIPNHYGVDDFPVIIQ 187 (471)
T ss_pred c-----ccCCCCCeE---EEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCc-ccccCCcccCCCcceeEEee
Confidence 2 358999999 99999998899999999999999999999999999999876 5556667644 359999999
Q ss_pred eeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEecC
Q 008071 242 DRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAAD 321 (579)
Q Consensus 242 D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~D 321 (579)
||.++.+|+..+.. .+..++.+|.++|||+.+|+++|++++|||||||+|+.+.|.|+|.+||+|+|||+|
T Consensus 188 D~~~~~~g~~~~~~---------~~~~g~~gd~~lvNG~~~p~~~v~~~~~RlRliNas~~~~~~l~l~d~~~~~vIa~D 258 (471)
T PRK10883 188 DKRLDNFGTPEYNE---------PGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLLNASNARRYQLQMSDGRPLHVIAGD 258 (471)
T ss_pred eeeeccCCCccccc---------cccCCccCCeeEECCccCCeEEecCCEEEEEEEEccCCceEEEEEcCCCeEEEEEeC
Confidence 99999888764421 123456799999999999999999899999999999999999999769999999999
Q ss_pred CCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCC---CCCCCCC---CCCccEEEEEecCCCCCCCCC
Q 008071 322 SAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYP---SGDPVND---ANGKVMKFIIKKNHELDTWRV 395 (579)
Q Consensus 322 G~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~---~g~~~~~---~~~~v~~~~v~~~~~~~~~~~ 395 (579)
|+++.+|+.+++|.|+|||||||+|++++. ..+.|.+....... .+..... ....++++++.+........+
T Consensus 259 Gg~~~~P~~~~~l~l~pGeR~dvlVd~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
T PRK10883 259 QGFLPAPVSVKQLSLAPGERREILVDMSNG--DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNL 336 (471)
T ss_pred CCcccCCcEeCeEEECCCCeEEEEEECCCC--ceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcC
Confidence 999999999999999999999999999873 47888875321111 0100000 124577887654322234456
Q ss_pred CCCCCCCCCCCCCCCccceEEEEEeeecCCCCcceEEEcCeecCCC-cccccCCCCeEEEEEEeCCCCCceeeeeeccEE
Q 008071 396 PEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEP-VTETPKAGTSEVWNVINLTEDNHPLHIHLGLFV 474 (579)
Q Consensus 396 P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~~-~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fq 474 (579)
|..|.+.+ +......+.+++.+.. ..|.|||+.|+.. ..+.+++|++|+|+|.|. +.|||||||++||
T Consensus 337 p~~l~~~~-~~~~~~~~~~~~~l~~--------~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~--~~HP~HlHg~~Fq 405 (471)
T PRK10883 337 PMRLLPDE-IMEGSPIRSREISLGD--------DLPGINGALWDMNRIDVTAQQGTWERWTVRAD--MPQAFHIEGVMFL 405 (471)
T ss_pred ChhhcCCC-CCCCCCcceEEEEecC--------CcCccCCcccCCCcceeecCCCCEEEEEEECC--CCcCEeECCccEE
Confidence 76665533 2333444556666532 1368999999864 356899999999999886 5899999999999
Q ss_pred EEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCC
Q 008071 475 VLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAE 554 (579)
Q Consensus 475 vl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~n 554 (579)
|++++ | .++.+++.+|||||.|+ +.++|+++|+ ++++. .
T Consensus 406 Vl~~~----------------------------G--~~~~~~~~gwkDTV~v~--~~v~i~~~f~--~~~~~-------~ 444 (471)
T PRK10883 406 IRNVN----------------------------G--AMPFPEDRGWKDTVWVD--GQVELLVYFG--QPSWA-------H 444 (471)
T ss_pred EEEec----------------------------C--CCCCccccCcCcEEEcC--CeEEEEEEec--CCCCC-------C
Confidence 99994 4 23445677999999995 4699999998 33210 0
Q ss_pred CceEEeeccccccccCccccEEEcC
Q 008071 555 PGYVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 555 pgw~~HCHil~Hed~GMm~~~~V~~ 579 (579)
-.||||||||+|||+|||++|+|+.
T Consensus 445 ~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 445 FPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CcEEeecccccccccCCccCeEEec
Confidence 1299999999999999999999974
No 3
>PLN02835 oxidoreductase
Probab=100.00 E-value=4.3e-74 Score=628.27 Aligned_cols=418 Identities=15% Similarity=0.163 Sum_probs=306.6
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++.+..... +.-...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 31 ~y~~~v~~~~~~~--dg~~~~~~~~N-----G~~PGP~I~~~~GD~v~v~v~N~L~~---------------------~t 82 (539)
T PLN02835 31 YYTWTVTYGTISP--LGVPQQVILIN-----GQFPGPRLDVVTNDNIILNLINKLDQ---------------------PF 82 (539)
T ss_pred EEEEEEEEEEecc--CCeEEEEEEEC-----CcCCCCCEEEECCCEEEEEEEeCCCC---------------------CC
Confidence 5677777775555 33478999997 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++.+. +||+|+ +||+|+||++| +|+|++..++||||||+|.. .|+.+||+|+|||+++. +
T Consensus 83 tiHWHGl~~~~~~~~DGv~~---tQ~pI~PG~sf---~Y~F~~~~q~GT~WYHsH~~----~q~~~Gl~G~lIV~~~~-~ 151 (539)
T PLN02835 83 LLTWNGIKQRKNSWQDGVLG---TNCPIPPNSNY---TYKFQTKDQIGTFTYFPSTL----FHKAAGGFGAINVYERP-R 151 (539)
T ss_pred cEEeCCcccCCCCCCCCCcc---CcCCCCCCCcE---EEEEEECCCCEeEEEEeCcc----chhcCcccceeEEeCCC-C
Confidence 999999999854 999985 79999999999 99998755899999999974 59999999999998654 2
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEec-CCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecC-cEEEEEEEecCC
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYMN-STGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRR-RKYRFRIINASN 301 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~-~~~RlRllNa~~ 301 (579)
.++..+. +++|++|+|+||+++....+... ..|. ...++|.++|||+..+.++|++ ++|||||||+|.
T Consensus 152 ~~~p~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~~g~---------~~~~~d~~liNG~~~~~~~v~~G~~yRlRliNa~~ 221 (539)
T PLN02835 152 IPIPFPL-PDGDFTLLVGDWYKTSHKTLQQRLDSGK---------VLPFPDGVLINGQTQSTFSGDQGKTYMFRISNVGL 221 (539)
T ss_pred CCcCCCC-CCceEEEEeeccccCCHHHHHHHhhcCC---------CCCCCceEEEccccCceEEECCCCEEEEEEEEcCC
Confidence 3333333 48899999999987653322100 0111 1235789999999999999998 999999999999
Q ss_pred CeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEE
Q 008071 302 ARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMK 381 (579)
Q Consensus 302 ~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~ 381 (579)
.+.+.|+| +||+|+||++||+++ +|..++.|.|+|||||||+|++++.+| +|+|+..... . . ......+|++
T Consensus 222 ~~~~~f~i-~gH~~~VI~~DG~~v-~p~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~--~-~--~~~~~~ail~ 293 (539)
T PLN02835 222 STSLNFRI-QGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRF--T-R--QILTATAVLH 293 (539)
T ss_pred CccEEEEE-CCCEEEEEEECCccC-CCceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEccc--c-C--CCcceEEEEE
Confidence 99999999 599999999999999 788999999999999999999998754 7988864311 0 0 1112345666
Q ss_pred EEEecCCCCCCCCCCC--------C----------CCCCCCCCCC-------CCccceEEEEEeeecCCCCcceEEEcCe
Q 008071 382 FIIKKNHELDTWRVPE--------K----------LIKYPSPNPS-------SASRTRYIAMYEYTSDIDEPTHLFINGK 436 (579)
Q Consensus 382 ~~v~~~~~~~~~~~P~--------~----------L~~~~~~~~~-------~~~~~r~~~l~~~~~~~g~~~~~~iNg~ 436 (579)
|+-..... ...+|. . |.+....+.+ .....+++.+............|.|||.
T Consensus 294 Y~~~~~~~--~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~ 371 (539)
T PLN02835 294 YSNSRTPA--SGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGV 371 (539)
T ss_pred ECCCCCCC--CCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCc
Confidence 64221100 001111 0 1111110000 0111233322211111112357999999
Q ss_pred ecCCC---c-------------------------------ccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechh
Q 008071 437 SYEEP---V-------------------------------TETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELV 482 (579)
Q Consensus 437 ~~~~~---~-------------------------------~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~ 482 (579)
+|..+ . .+.++.|++++|.|.|.+...||||||||+|+||+++.+
T Consensus 372 s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g- 450 (539)
T PLN02835 372 SYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSG- 450 (539)
T ss_pred ccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCC-
Confidence 98631 1 012356889999999998889999999999999998643
Q ss_pred hhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEee
Q 008071 483 KLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHC 561 (579)
Q Consensus 483 ~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HC 561 (579)
.|+.. . ....+..+|.|||||.|++++++.| ||. +|||| |+|||
T Consensus 451 ---~~~~~-----------------~-~~~~nl~nP~~RDTv~vp~~gw~~I--rF~------------aDNPG~Wl~HC 495 (539)
T PLN02835 451 ---QWTPA-----------------K-RSLYNLVDALTRHTAQVYPKSWTTI--LVS------------LDNQGMWNMRS 495 (539)
T ss_pred ---CCCcc-----------------c-ccccCCCCCCccceEEeCCCCEEEE--EEE------------CcCCEEeeeee
Confidence 12110 0 0123456789999999999998755 887 67999 99999
Q ss_pred ccccccccCccccEEEc
Q 008071 562 HVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 562 Hil~Hed~GMm~~~~V~ 578 (579)
||++|...||+..|+|.
T Consensus 496 Hi~~H~~~Gm~~~~~V~ 512 (539)
T PLN02835 496 AIWERQYLGQQFYLRVW 512 (539)
T ss_pred cchhhhhcccEEEEEEc
Confidence 99999999999999885
No 4
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.9e-74 Score=632.04 Aligned_cols=413 Identities=22% Similarity=0.335 Sum_probs=295.6
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
+++|++.+.++.++. . ...+|+|| |++|||+||+++||+|+|+|+|+|+. +|
T Consensus 47 ~~~L~v~~~~~~~~G-~-~~~~~~~N-----g~~PGP~ir~~~Gd~v~v~v~N~l~~---------------------~t 98 (587)
T TIGR01480 47 EFDLTIGETMVNFTG-R-ARPAITVN-----GSIPGPLLRWREGDTVRLRVTNTLPE---------------------DT 98 (587)
T ss_pred eEEEEEEEEEEecCC-e-EEEEEEEC-----CccCCceEEEECCCEEEEEEEcCCCC---------------------Cc
Confidence 678888888888853 3 57899997 99999999999999999999999998 89
Q ss_pred EEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCC
Q 008071 146 VVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETP 225 (579)
Q Consensus 146 ~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~ 225 (579)
+|||||+++++.+||+|+ ++||+|+||++| +|+|++. ++||||||||.. .|++.||+|+|||+++. +.+
T Consensus 99 siHwHGl~~~~~~DGvP~--vt~~~I~PG~s~---~Y~f~~~-~~GTyWYHsH~~----~q~~~GL~G~lIV~~~~-~~p 167 (587)
T TIGR01480 99 SIHWHGILLPFQMDGVPG--VSFAGIAPGETF---TYRFPVR-QSGTYWYHSHSG----FQEQAGLYGPLIIDPAE-PDP 167 (587)
T ss_pred eEEcCCCcCCccccCCCc--ccccccCCCCeE---EEEEECC-CCeeEEEecCch----hHhhccceEEEEECCCc-ccc
Confidence 999999999999999999 899999999999 9999997 899999999984 68999999999999543 322
Q ss_pred CCCCCCCCCceeEEEEeeeeecCCcEE---------ec--------------CCCCCCC--CCCCCC---------CCCC
Q 008071 226 LRLPSGDEFDRPLVVFDRSFRTDGSIY---------MN--------------STGNNPS--IHPQWQ---------PEYF 271 (579)
Q Consensus 226 ~~lp~~~~~e~~lvl~D~~~~~~g~~~---------~~--------------~~g~~~~--~~~~~~---------~~~~ 271 (579)
..+|+|++|+|+||.+.....+. ++ ..|.... ....|. ....
T Consensus 168 ----~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~ 243 (587)
T TIGR01480 168 ----VRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVN 243 (587)
T ss_pred ----CCCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCccccccc
Confidence 23689999999999864322210 00 0010000 000011 0111
Q ss_pred C--cEEEECCcccC---eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEE
Q 008071 272 G--DAIIVNGKAWP---RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVV 345 (579)
Q Consensus 272 g--d~~~VNG~~~P---~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvl 345 (579)
| ..++|||+..+ .+.+++ ++|||||||+|+.+.|.|+| +||+|+||++||.++ +|+.++++.|+|||||||+
T Consensus 244 G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I-~gh~m~VIa~DG~~v-~Pv~vd~l~I~pGeRyDVl 321 (587)
T TIGR01480 244 GSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRI-PGLKLTVVAVDGQYV-HPVSVDEFRIAPAETFDVI 321 (587)
T ss_pred CccceEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEE-CCCEEEEEEcCCcCc-CceEeCeEEEcCcceeEEE
Confidence 2 24899999754 478888 99999999999999999999 599999999999999 9999999999999999999
Q ss_pred EEcCCCCCcEEEEecCCCC--CCC-------CCCC---CCCCCCcc-----E------------EEEEecCCC-------
Q 008071 346 IDFSESKSDVAILANDAPY--PYP-------SGDP---VNDANGKV-----M------------KFIIKKNHE------- 389 (579)
Q Consensus 346 v~~~~~~g~~~~l~~~~~~--~~~-------~g~~---~~~~~~~v-----~------------~~~v~~~~~------- 389 (579)
|+.++. +.|.|.+.... .+. .+.. +.....++ | .+...+...
T Consensus 322 V~~~~~--g~~~i~a~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (587)
T TIGR01480 322 VEPTGD--DAFTIFAQDSDRTGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRA 399 (587)
T ss_pred EecCCC--ceEEEEEEecCCCceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccc
Confidence 998643 26666553210 000 0000 00000000 0 000000000
Q ss_pred -----CC----------------------------------C--CC---CCCC------CCCCCC-CCCCCCccceEEEE
Q 008071 390 -----LD----------------------------------T--WR---VPEK------LIKYPS-PNPSSASRTRYIAM 418 (579)
Q Consensus 390 -----~~----------------------------------~--~~---~P~~------L~~~~~-~~~~~~~~~r~~~l 418 (579)
.+ . .. .+.+ |+...+ .+.....++..+.|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L 479 (587)
T TIGR01480 400 QSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHL 479 (587)
T ss_pred cccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEE
Confidence 00 0 00 0000 111000 11112223333434
Q ss_pred EeeecCCCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcc
Q 008071 419 YEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAI 498 (579)
Q Consensus 419 ~~~~~~~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~ 498 (579)
.+ ......|+|||+.|.+...+.++.|++++|.|.|.+.+.|||||||+.|+++..+
T Consensus 480 ~g----~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~------------------- 536 (587)
T TIGR01480 480 TG----NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ------------------- 536 (587)
T ss_pred cC----CCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-------------------
Confidence 32 2234569999999986555679999999999999999999999999999998652
Q ss_pred cccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 499 KCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 499 ~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
|. .+.||||+.|+||+++++ +|. ++||| |+||||+++|++.|||+.|+|
T Consensus 537 ---------G~-------~~~~~dTv~V~Pg~t~~~--~f~------------ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 537 ---------GE-------FQVRKHTVDVPPGGKRSF--RVT------------ADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred ---------Cc-------ccccCCceeeCCCCEEEE--EEE------------CCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 31 135899999999998877 554 35889 999999999999999999998
Q ss_pred c
Q 008071 578 I 578 (579)
Q Consensus 578 ~ 578 (579)
.
T Consensus 587 ~ 587 (587)
T TIGR01480 587 R 587 (587)
T ss_pred C
Confidence 4
No 5
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.4e-72 Score=621.11 Aligned_cols=423 Identities=21% Similarity=0.306 Sum_probs=302.2
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
++|++++.+.. +.++.-...+|+|| |++|||+|++++||+|+|+++|+|+. +
T Consensus 4 r~y~~~it~~~--~~pdG~~~~~~~~N-----G~~PGP~i~~~~GD~v~v~v~N~l~~---------------------~ 55 (539)
T TIGR03389 4 RHYTFDVQEKN--VTRLCSTKSILTVN-----GKFPGPTLYAREGDTVIVNVTNNVQY---------------------N 55 (539)
T ss_pred EEEEEEEEEEE--eccCCcEeEEEEEC-----CcccCCEEEEEcCCEEEEEEEeCCCC---------------------C
Confidence 35666666663 34454467899997 99999999999999999999999998 8
Q ss_pred eEEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCC
Q 008071 145 TVVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDV 222 (579)
Q Consensus 145 t~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~ 222 (579)
|+|||||+++.+. +||+|+ +|||+|+||++| +|+|++.+++||||||||.++ | ++||+|+|||+++.
T Consensus 56 tsiHwHGl~q~~~~~~DGv~~--vTq~pI~PG~s~---~Y~f~~~~~~GT~WYHsH~~~----~-~~Gl~G~lIV~~~~- 124 (539)
T TIGR03389 56 VTIHWHGVRQLRNGWADGPAY--ITQCPIQPGQSY---VYNFTITGQRGTLWWHAHISW----L-RATVYGAIVILPKP- 124 (539)
T ss_pred eeEecCCCCCCCCCCCCCCcc--cccCCcCCCCeE---EEEEEecCCCeeEEEecCchh----h-hccceEEEEEcCCC-
Confidence 9999999998765 899998 999999999999 999998669999999999963 3 47999999999766
Q ss_pred CCCCCCCCCCCCceeEEEEeeeeecCCcEEe--cCCCCCCCCCCCCCCCCCCcEEEECCcccC----------eEEecC-
Q 008071 223 ETPLRLPSGDEFDRPLVVFDRSFRTDGSIYM--NSTGNNPSIHPQWQPEYFGDAIIVNGKAWP----------RMTVRR- 289 (579)
Q Consensus 223 ~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~--~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P----------~~~v~~- 289 (579)
+.++.++. +++|++|+|+||++.....++. ...|.. ..++|.++|||+..+ .++|++
T Consensus 125 ~~~~~~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~---------~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G 194 (539)
T TIGR03389 125 GVPYPFPK-PDREVPIILGEWWNADVEAVINQANQTGGA---------PNVSDAYTINGHPGPLYNCSSKDTFKLTVEPG 194 (539)
T ss_pred CCCCCCCC-CCceEEEEecccccCCHHHHHHHHHhcCCC---------CCccceEEECCCcCCCCCCCCCCceEEEECCC
Confidence 43443333 3789999999997643322110 111111 124689999999753 588998
Q ss_pred cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCC
Q 008071 290 RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSG 369 (579)
Q Consensus 290 ~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g 369 (579)
++|||||||+|..+.+.|+| +||+|+||++||.++ +|+.++++.|+|||||||+|++++.+| .|+|+......-...
T Consensus 195 ~~~RlRlINa~~~~~~~~~i-dgH~~~VIa~DG~~~-~P~~~~~l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~ 271 (539)
T TIGR03389 195 KTYLLRIINAALNDELFFAI-ANHTLTVVEVDATYT-KPFKTKTIVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGA 271 (539)
T ss_pred CEEEEEEEeccCCceEEEEE-CCCeEEEEEeCCccc-CceEeCeEEecCCCEEEEEEECCCCCc-eEEEEEeccccCccC
Confidence 89999999999999999999 699999999999999 999999999999999999999988664 899887532100000
Q ss_pred CCCCCCCCccEEEEEecCCCCC-C--CCCC------------CCCCCCC-----CCCCCCCccceEEEEEeee-------
Q 008071 370 DPVNDANGKVMKFIIKKNHELD-T--WRVP------------EKLIKYP-----SPNPSSASRTRYIAMYEYT------- 422 (579)
Q Consensus 370 ~~~~~~~~~v~~~~v~~~~~~~-~--~~~P------------~~L~~~~-----~~~~~~~~~~r~~~l~~~~------- 422 (579)
.......+|++| .+..... + ...| ..|.++. ...+..++....+.+....
T Consensus 272 -~~~~~~~ail~Y--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 348 (539)
T TIGR03389 272 -FDNTTTTAILQY--KGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNT 348 (539)
T ss_pred -CCCcceEEEEEE--CCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccc
Confidence 011122345554 3322100 0 0011 0122211 1111122222222221100
Q ss_pred --cCCCCcceEEEcCeecCCCc---------------------------------------------ccccCCCCeEEEE
Q 008071 423 --SDIDEPTHLFINGKSYEEPV---------------------------------------------TETPKAGTSEVWN 455 (579)
Q Consensus 423 --~~~g~~~~~~iNg~~~~~~~---------------------------------------------~~~~~~G~~~~w~ 455 (579)
...+....|.|||.+|..+. .+.++.|+++++.
T Consensus 349 ~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~iv 428 (539)
T TIGR03389 349 CQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELV 428 (539)
T ss_pred cccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEE
Confidence 01233457899998753110 1235668999999
Q ss_pred EEeCCC---CCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEE
Q 008071 456 VINLTE---DNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVT 532 (579)
Q Consensus 456 l~N~~~---~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v 532 (579)
|.|.+. ..||||||||+||||+++.+ .|+.. ......+..+|.+||||.|++++++
T Consensus 429 i~n~~~~~~~~HP~HLHGh~F~Vlg~g~g----~~~~~-----------------~~~~~~nl~nP~rRDTv~vp~~g~v 487 (539)
T TIGR03389 429 LQDTSILGSENHPIHLHGYNFFVVGTGFG----NFDPK-----------------KDPAKFNLVDPPERNTVGVPTGGWA 487 (539)
T ss_pred EecCCcCCCCCCcEeEcCCceEEEEeccC----CCCcc-----------------cCccccccCCCCeeeeEEcCCCceE
Confidence 999753 38999999999999999643 12110 0001345678899999999999976
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 533 KILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 533 ~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.| ||+ +|||| |+|||||.+|+..||+.+|.+
T Consensus 488 vi--rf~------------adNPG~W~~HCHi~~H~~~Gm~~~~~~ 519 (539)
T TIGR03389 488 AI--RFV------------ADNPGVWFMHCHLEVHTTWGLKMAFLV 519 (539)
T ss_pred EE--EEe------------cCCCeEEEEEecccchhhhcceEEEEE
Confidence 44 888 67999 999999999999999999976
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.9e-72 Score=614.77 Aligned_cols=418 Identities=15% Similarity=0.163 Sum_probs=304.1
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++...... ++.-...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 29 ~y~~~v~~~~~~--pdG~~r~~~~iN-----Gq~PGP~I~~~~GD~v~V~v~N~l~~---------------------~t 80 (552)
T PLN02354 29 FFTWNVTYGTAS--PLGVPQQVILIN-----GQFPGPNINSTSNNNIVINVFNNLDE---------------------PF 80 (552)
T ss_pred EEEEEEEEEEec--CCCeEEEEEEEC-----CCCcCCcEEEeCCCEEEEEEEECCCC---------------------Cc
Confidence 566776666434 344468899997 99999999999999999999999987 89
Q ss_pred EEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++... +||+|+ |||+|+||++| +|+|++.+++||||||+|.. .|+.+||+|+|||++++ +
T Consensus 81 tiHWHGi~q~~~~~~DGv~~---TQcpI~PG~sf---~Y~F~~~~q~GT~WYHsH~~----~Q~~~Gl~G~lII~~~~-~ 149 (552)
T PLN02354 81 LLTWSGIQQRKNSWQDGVPG---TNCPIPPGTNF---TYHFQPKDQIGSYFYYPSTG----MHRAAGGFGGLRVNSRL-L 149 (552)
T ss_pred ccccccccCCCCcccCCCcC---CcCCCCCCCcE---EEEEEeCCCCcceEEecCcc----ceecCCccceEEEcCCc-C
Confidence 999999998754 999984 89999999999 99999855899999999984 69999999999999765 3
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEe-cCCCCCCCCCCCCCCCCCCcEEEECCcc-------cCeEEecC-cEEEE
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYM-NSTGNNPSIHPQWQPEYFGDAIIVNGKA-------WPRMTVRR-RKYRF 294 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~-~~~g~~~~~~~~~~~~~~gd~~~VNG~~-------~P~~~v~~-~~~Rl 294 (579)
.+.+... ++.|++|+|+||+++....+.. -..|.. . ...|.++|||+. .+.++|++ ++|||
T Consensus 150 ~~~p~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~~g~~--------~-~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRl 219 (552)
T PLN02354 150 IPVPYAD-PEDDYTVLIGDWYTKSHTALKKFLDSGRT--------L-GRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRY 219 (552)
T ss_pred CCCCCCC-cCceEEEEeeeeccCCHHHHHHHHhcCCC--------C-CCCCeEEEeCCcCCCCCCCceEEEECCCCEEEE
Confidence 3332222 2679999999998765433210 011111 0 125899999996 47899998 99999
Q ss_pred EEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCC
Q 008071 295 RIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVND 374 (579)
Q Consensus 295 RllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~ 374 (579)
||||+|..+.+.|+| +||+|+||++||+++ +|..+++|.|++||||||+|++++.+| +|+++..... . + ...
T Consensus 220 RiINa~~~~~~~f~I-dgH~~tVIa~DG~~v-~p~~~~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~--~-~--~~~ 291 (552)
T PLN02354 220 RICNVGLKSSLNFRI-QGHKMKLVEMEGSHV-LQNDYDSLDVHVGQCFSVLVTANQAPK-DYYMVASTRF--L-K--KVL 291 (552)
T ss_pred EEEecCCCceEEEEE-CCceEEEEEeCCccc-CCcceeEEEEccCceEEEEEECCCCCC-cEEEEEeccc--c-C--CCc
Confidence 999999999999999 599999999999999 789999999999999999999998765 7888765321 1 1 111
Q ss_pred CCCccEEEEEecCCCCCCCCCCC-----------------CCCCCCCCCCC-------CCccceEEEEEeeecCCCCcce
Q 008071 375 ANGKVMKFIIKKNHELDTWRVPE-----------------KLIKYPSPNPS-------SASRTRYIAMYEYTSDIDEPTH 430 (579)
Q Consensus 375 ~~~~v~~~~v~~~~~~~~~~~P~-----------------~L~~~~~~~~~-------~~~~~r~~~l~~~~~~~g~~~~ 430 (579)
...+|++|. ++........|. .|.+....+.+ .....+.+.+............
T Consensus 292 ~~~ail~Y~--g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 369 (552)
T PLN02354 292 TTTGIIRYE--GGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLR 369 (552)
T ss_pred cEEEEEEEC--CCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEE
Confidence 234566653 321100001110 11111111101 0112233333221111111356
Q ss_pred EEEcCeecCCC---c----------------------------------ccccCCCCeEEEEEEeCCCCCceeeeeeccE
Q 008071 431 LFINGKSYEEP---V----------------------------------TETPKAGTSEVWNVINLTEDNHPLHIHLGLF 473 (579)
Q Consensus 431 ~~iNg~~~~~~---~----------------------------------~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~F 473 (579)
|.|||.+|..+ . ...++.|++++|.|+|.....||||||||+|
T Consensus 370 ~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F 449 (552)
T PLN02354 370 YALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSF 449 (552)
T ss_pred EEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccE
Confidence 89999887522 1 1234567899999999887899999999999
Q ss_pred EEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCC
Q 008071 474 VVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTA 553 (579)
Q Consensus 474 qvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~ 553 (579)
|||+++.+ .|+.. .+...+..+|.+|||+.|++++++.| ||+ +|
T Consensus 450 ~Vlg~G~G----~~~~~------------------~~~~~nl~nP~rRDTv~vp~~Gw~vI--RF~------------aD 493 (552)
T PLN02354 450 FAVAVEPG----TWTPE------------------KRKNYNLLDAVSRHTVQVYPKSWAAI--LLT------------FD 493 (552)
T ss_pred EEEeecCC----CCCcc------------------ccccCCcCCCCccceEEeCCCCeEEE--EEE------------ec
Confidence 99999754 22210 01234556789999999999997754 887 57
Q ss_pred CCc-eEEeeccccccccCccccEEEc
Q 008071 554 EPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 554 npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
||| |+|||||..|...||...|.|+
T Consensus 494 NPGvW~~HCHi~~H~~~g~~l~~~v~ 519 (552)
T PLN02354 494 NAGMWNIRSENWERRYLGQQLYASVL 519 (552)
T ss_pred CCeEEeeeccccccccccceEEEEEe
Confidence 999 9999999999999999999876
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=6.2e-72 Score=609.64 Aligned_cols=420 Identities=15% Similarity=0.134 Sum_probs=304.1
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++.... ..++.-...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 28 ~~~~~vt~~~--~~pdG~~~~~~~vN-----G~~PGP~I~~~~GD~v~V~v~N~L~~---------------------~t 79 (545)
T PLN02168 28 SYQWVVSYSQ--RFILGGNKQVIVIN-----DMFPGPLLNATANDVINVNIFNNLTE---------------------PF 79 (545)
T ss_pred EEEEEEEEEE--ecCCCeEEEEEEEC-----CcCCCCcEEEECCCEEEEEEEeCCCC---------------------Cc
Confidence 5666666664 33454478999997 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++.+. +||+|+ +||+|+||++| +|+|++.+++||||||+|.. .|+.+||+|+|||++++ +
T Consensus 80 tiHWHGl~~~~~~~~DGv~g---tQcpI~PG~sf---tY~F~~~~q~GT~WYHsH~~----~Q~~~GL~G~lII~~~~-~ 148 (545)
T PLN02168 80 LMTWNGLQLRKNSWQDGVRG---TNCPILPGTNW---TYRFQVKDQIGSYFYFPSLL----LQKAAGGYGAIRIYNPE-L 148 (545)
T ss_pred cEeeCCccCCCCCCcCCCCC---CcCCCCCCCcE---EEEEEeCCCCceEEEecChh----hhhhCcceeEEEEcCCc-c
Confidence 999999999876 999984 89999999999 99999865899999999985 69999999999999776 3
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEec-CCCCCCCCCCCCCCCCCCcEEEECCcc--cCeEEecC-cEEEEEEEec
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYMN-STGNNPSIHPQWQPEYFGDAIIVNGKA--WPRMTVRR-RKYRFRIINA 299 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~gd~~~VNG~~--~P~~~v~~-~~~RlRllNa 299 (579)
.+.+++. ++.|+.|+|+||++.....+... ..|. ....+|.++|||+. .+.++|++ ++|||||||+
T Consensus 149 ~~~p~~~-~d~e~~l~l~Dw~~~~~~~~~~~~~~g~---------~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa 218 (545)
T PLN02168 149 VPVPFPK-PDEEYDILIGDWFYADHTVMRASLDNGH---------SLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNV 218 (545)
T ss_pred cCcCcCc-ccceeeEEEEecCCCCHHHHHhhhhcCC---------CCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEec
Confidence 3333443 37899999999976532222110 0110 11246899999995 67899998 9999999999
Q ss_pred CCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCC-C--cEEEEecCCCCCCCCCCCCCCCC
Q 008071 300 SNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESK-S--DVAILANDAPYPYPSGDPVNDAN 376 (579)
Q Consensus 300 ~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~-g--~~~~l~~~~~~~~~~g~~~~~~~ 376 (579)
|..+.+.|+| +||+|+||++||.++ +|..+++|.|+|||||||+|++++.. | +.|+++..... ++ .....
T Consensus 219 ~~~~~~~~~I-dgH~~tVIa~DG~~v-~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~----~~-~~~~~ 291 (545)
T PLN02168 219 GLKTCLNFRI-QDHDMLLVETEGTYV-QKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARF----TD-AYLGG 291 (545)
T ss_pred cCCceEEEEE-CCcEEEEEEECCeEC-CCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecc----cC-CCcce
Confidence 9999999999 599999999999999 78889999999999999999998654 4 47988876421 11 11123
Q ss_pred CccEEEEEecCCCCCC-CCCCC----------------CCCCCCCCCCCC-------CccceEEEEEeeecCCCCcceEE
Q 008071 377 GKVMKFIIKKNHELDT-WRVPE----------------KLIKYPSPNPSS-------ASRTRYIAMYEYTSDIDEPTHLF 432 (579)
Q Consensus 377 ~~v~~~~v~~~~~~~~-~~~P~----------------~L~~~~~~~~~~-------~~~~r~~~l~~~~~~~g~~~~~~ 432 (579)
.+|++|.-.......+ ...|. .|.|....+.+. ....+.+.+............|+
T Consensus 292 ~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 371 (545)
T PLN02168 292 VALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYT 371 (545)
T ss_pred EEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEE
Confidence 4566664221110000 00011 111100111111 11123332221100011135689
Q ss_pred EcCeecCCC---c-------------------------------ccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeE
Q 008071 433 INGKSYEEP---V-------------------------------TETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQ 478 (579)
Q Consensus 433 iNg~~~~~~---~-------------------------------~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~ 478 (579)
|||.+|..| . .+.++.|++++|.|+|.....||||||||+||||++
T Consensus 372 iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~ 451 (545)
T PLN02168 372 INGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGY 451 (545)
T ss_pred ECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEEC
Confidence 999988632 1 023568899999999987779999999999999999
Q ss_pred echhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-e
Q 008071 479 RELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-Y 557 (579)
Q Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w 557 (579)
+.+ .|+. ..+...++.+|.+|||+.|++++++ ++||+ ||||| |
T Consensus 452 g~g----~~~~------------------~~~~~~Nl~nP~rRDTv~vp~~Gw~--vIRF~------------aDNPG~W 495 (545)
T PLN02168 452 GFG----AWSE------------------SKKAGYNLVDAVSRSTVQVYPYSWT--AILIA------------MDNQGMW 495 (545)
T ss_pred CCC----CCCc------------------cccccCCCCCCCccceEEeCCCCEE--EEEEE------------ccCCeEE
Confidence 644 2221 0112346678999999999999976 55888 68999 9
Q ss_pred EEeeccccccccCccccEEE
Q 008071 558 VYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 558 ~~HCHil~Hed~GMm~~~~V 577 (579)
+|||||..|...||...|.|
T Consensus 496 l~HCHi~~~~h~g~gl~~~v 515 (545)
T PLN02168 496 NVRSQKAEQWYLGQELYMRV 515 (545)
T ss_pred eeeecCcccceecCcEEEEE
Confidence 99999988888888777766
No 8
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.4e-71 Score=603.89 Aligned_cols=420 Identities=14% Similarity=0.116 Sum_probs=304.9
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++.... +.++.-...+|+|| |++|||+|++++||+|+|+++|+|++ +|
T Consensus 30 ~~~~~vt~~~--~~pdG~~r~~~~vN-----G~~PGP~I~~~~GD~v~V~V~N~L~~---------------------~t 81 (543)
T PLN02991 30 FFEWHVTYGN--ISPLGVAQQGILIN-----GKFPGPDIISVTNDNLIINVFNHLDE---------------------PF 81 (543)
T ss_pred EEEEEEEEEE--eCCCCEEEEEEEEc-----CCCCCCcEEEECCCEEEEEecCCCCC---------------------Cc
Confidence 4555555653 33455467899997 99999999999999999999999987 89
Q ss_pred EEeeCCCCCCC--CCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~--~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++.+ .+||+|+ +||+|+||++| +|+|++..++||||||+|.. .|..+||+|+|||++++ +
T Consensus 82 tiHWHGi~q~~~~~~DGv~~---tQcpI~PG~sf---tY~F~~~~q~GT~WYHsH~~----~q~~~Gl~G~lIV~~~~-~ 150 (543)
T PLN02991 82 LISWSGIRNWRNSYQDGVYG---TTCPIPPGKNY---TYALQVKDQIGSFYYFPSLG----FHKAAGGFGAIRISSRP-L 150 (543)
T ss_pred cEEECCcccCCCccccCCCC---CCCccCCCCcE---EEEEEeCCCCcceEEecCcc----hhhhCCCeeeEEEeCCc-c
Confidence 99999999864 4999974 79999999999 99999965899999999985 47889999999999765 3
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEec-CCCCCCCCCCCCCCCCCCcEEEECCccc-CeEEecC-cEEEEEEEecC
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYMN-STGNNPSIHPQWQPEYFGDAIIVNGKAW-PRMTVRR-RKYRFRIINAS 300 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~gd~~~VNG~~~-P~~~v~~-~~~RlRllNa~ 300 (579)
.+.+.+. +++|++|+|+||+++....+... ..+. ....+|.++|||+.. +.++|++ ++|||||||+|
T Consensus 151 ~~~p~~~-~d~d~~i~l~DW~~~~~~~~~~~~~~~~---------~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~ 220 (543)
T PLN02991 151 IPVPFPA-PADDYTVLIGDWYKTNHKDLRAQLDNGG---------KLPLPDGILINGRGSGATLNIEPGKTYRLRISNVG 220 (543)
T ss_pred cCccccc-ccceeEEEecceecCCHHHHHHHhhcCC---------CCCCCCEEEEccCCCCceEEECCCCEEEEEEEecc
Confidence 3333332 47899999999987654332110 0110 123578999999965 7799998 99999999999
Q ss_pred CCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccE
Q 008071 301 NARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVM 380 (579)
Q Consensus 301 ~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~ 380 (579)
..+.+.|+| +||+|+||++||.++ +|..++++.|+|||||||+|++++..| .|+++..... .. ......+|+
T Consensus 221 ~~~~~~~~i-dgH~~tVIa~DG~~~-~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~---~~--~~~~~~AIl 292 (543)
T PLN02991 221 LQNSLNFRI-QNHTMKLVEVEGTHT-IQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRF---TS--KILITTGVL 292 (543)
T ss_pred CCeeEEEEE-CCCEEEEEEeCCccc-cceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeecc---CC--CCcceEEEE
Confidence 999999999 599999999999998 899999999999999999999999865 6777654321 01 111334677
Q ss_pred EEEEecCCCCCC-CCC--------------CCCCCCCCCCCCCCC-------ccceEEEEEeeecCCCCcceEEEcCeec
Q 008071 381 KFIIKKNHELDT-WRV--------------PEKLIKYPSPNPSSA-------SRTRYIAMYEYTSDIDEPTHLFINGKSY 438 (579)
Q Consensus 381 ~~~v~~~~~~~~-~~~--------------P~~L~~~~~~~~~~~-------~~~r~~~l~~~~~~~g~~~~~~iNg~~~ 438 (579)
+|.-.......+ ... ...|.|....+.+.. ...+.+.+............|.|||.+|
T Consensus 293 ~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~ 372 (543)
T PLN02991 293 HYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASF 372 (543)
T ss_pred EeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCcc
Confidence 764221110000 000 011222111111111 1122222221100011134689999988
Q ss_pred CCC---c-------------------------------ccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhh
Q 008071 439 EEP---V-------------------------------TETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKL 484 (579)
Q Consensus 439 ~~~---~-------------------------------~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~ 484 (579)
..+ . ...++.|++++|.|.|.....||||||||+|+||+++.+
T Consensus 373 ~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G--- 449 (543)
T PLN02991 373 YPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELG--- 449 (543)
T ss_pred CCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCC---
Confidence 521 1 123477899999999988789999999999999999644
Q ss_pred HHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecc
Q 008071 485 EEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHV 563 (579)
Q Consensus 485 ~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHi 563 (579)
.|+. ..+...++.+|.+||||.|++++++. +||. +|||| |+|||||
T Consensus 450 -~f~~------------------~~~~~~Nl~nP~rRDTv~vp~~Gw~v--IRF~------------aDNPG~W~~HCHi 496 (543)
T PLN02991 450 -KWSA------------------ASRKVYNLNDAVSRCTVQVYPRSWTA--IYVS------------LDNVGMWNLRSEL 496 (543)
T ss_pred -CCCc------------------ccccccCCCCCCcccEEEECCCCEEE--EEEE------------CCCCEEeeeeeCc
Confidence 2221 01123456789999999999999774 5887 67999 9999999
Q ss_pred ccccccCccccEEEc
Q 008071 564 LDHEDNVMMRPLKLI 578 (579)
Q Consensus 564 l~Hed~GMm~~~~V~ 578 (579)
..|+..||...++|.
T Consensus 497 ~~h~~~gm~~~~~v~ 511 (543)
T PLN02991 497 WERQYLGQQFYMRVY 511 (543)
T ss_pred cccccccEEEEEEec
Confidence 999999999988764
No 9
>PLN02792 oxidoreductase
Probab=100.00 E-value=9.3e-71 Score=600.16 Aligned_cols=421 Identities=14% Similarity=0.159 Sum_probs=306.2
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++...... ++.-...+|+|| |++|||+||+++||+|+|+++|+|++ +|
T Consensus 18 ~~~~~vt~~~~~--pdg~~~~~~~vN-----Gq~PGP~I~~~~GD~v~V~v~N~L~~---------------------~t 69 (536)
T PLN02792 18 FYNWRVTYGNIS--LLTLPRRGILIN-----GQFPGPEIRSLTNDNLVINVHNDLDE---------------------PF 69 (536)
T ss_pred EEEEEEEEEEeC--CCCeEEEEEEEC-----CCCCCCcEEEECCCEEEEEEEeCCCC---------------------Cc
Confidence 566666666333 444467899997 99999999999999999999999997 89
Q ss_pred EEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++... +||+++ +||+|+||++| +|+|++..++||||||+|.. .|..+||+|+|||+++. +
T Consensus 70 tiHWHGl~q~~~~~~DGv~~---tqcPI~PG~sf---tY~F~~~~q~GT~WYHsH~~----~q~~~Gl~G~liI~~~~-~ 138 (536)
T PLN02792 70 LLSWNGVHMRKNSYQDGVYG---TTCPIPPGKNY---TYDFQVKDQVGSYFYFPSLA----VQKAAGGYGSLRIYSLP-R 138 (536)
T ss_pred CEeCCCcccCCCCccCCCCC---CcCccCCCCcE---EEEEEeCCCccceEEecCcc----hhhhcccccceEEeCCc-c
Confidence 999999999875 999864 78999999999 99999865899999999984 68899999999998654 3
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEe-cCCCCCCCCCCCCCCCCCCcEEEECCcc---cCeEEecC-cEEEEEEEe
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYM-NSTGNNPSIHPQWQPEYFGDAIIVNGKA---WPRMTVRR-RKYRFRIIN 298 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~-~~~g~~~~~~~~~~~~~~gd~~~VNG~~---~P~~~v~~-~~~RlRllN 298 (579)
.+..++. ++.|++|+|+||+++..+.+.. -..|. .....+|.++|||+. .+.++|++ ++|||||||
T Consensus 139 ~~~p~~~-~d~e~~i~l~Dw~~~~~~~~~~~~~~g~--------~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliN 209 (536)
T PLN02792 139 IPVPFPE-PAGDFTFLIGDWYRRNHTTLKKILDGGR--------KLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISN 209 (536)
T ss_pred cCcCCCc-ccceeEEEecccccCCHHHHHHHhhccC--------cCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEE
Confidence 3333443 3789999999998765443211 01111 012357999999995 46799998 999999999
Q ss_pred cCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCc
Q 008071 299 ASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGK 378 (579)
Q Consensus 299 a~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~ 378 (579)
+|..+.+.|+| +||+|+||++||+++ +|..+++|.|+|||||||+|++++.+| .|+++..... . . ......+
T Consensus 210 a~~~~~~~f~i-~gH~~tVI~~DG~~v-~p~~~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~--~-~--~~~~~~a 281 (536)
T PLN02792 210 VGLQTSLNFEI-LGHQLKLIEVEGTHT-VQSMYTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRF--I-A--AKVLVSS 281 (536)
T ss_pred cCCCceEEEEE-CCcEEEEEEeCCccC-CCcceeEEEEccCceEEEEEEcCCCCc-eEEEEEEecc--C-C--CCCceEE
Confidence 99999999999 599999999999999 788899999999999999999998754 7888765421 1 1 1123346
Q ss_pred cEEEEEecCCCCCCCCCC----------------CCCCCCCCCCCCCC-------ccceEEEEEeeecCCCCcceEEEcC
Q 008071 379 VMKFIIKKNHELDTWRVP----------------EKLIKYPSPNPSSA-------SRTRYIAMYEYTSDIDEPTHLFING 435 (579)
Q Consensus 379 v~~~~v~~~~~~~~~~~P----------------~~L~~~~~~~~~~~-------~~~r~~~l~~~~~~~g~~~~~~iNg 435 (579)
|++|.-...........| ..|.+..+.+.++. ...+.+.+............|+|||
T Consensus 282 il~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~ 361 (536)
T PLN02792 282 TLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAING 361 (536)
T ss_pred EEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECC
Confidence 666642211100000011 01111000011110 1112222211101111245689999
Q ss_pred eecCCC---c--------------------------------ccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEec
Q 008071 436 KSYEEP---V--------------------------------TETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRE 480 (579)
Q Consensus 436 ~~~~~~---~--------------------------------~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~ 480 (579)
.+|..| . ...++.|+++++.|+|.....||||||||+|+||+++.
T Consensus 362 ~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~ 441 (536)
T PLN02792 362 VSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINK 441 (536)
T ss_pred cccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecC
Confidence 888521 0 12467899999999998777999999999999999975
Q ss_pred hhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEE
Q 008071 481 LVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVY 559 (579)
Q Consensus 481 ~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~ 559 (579)
+ .|+. ..+...++.+|.+||||.|++++++.| ||. +|||| |+|
T Consensus 442 G----~~~~------------------~~~~~~Nl~nP~~RdTv~v~~~gw~aI--Rf~------------aDNPGvW~~ 485 (536)
T PLN02792 442 G----IWSR------------------ASRREYNLKDAISRSTTQVYPESWTAV--YVA------------LDNVGMWNL 485 (536)
T ss_pred C----CCCc------------------ccccccCcCCCCccceEEECCCCEEEE--EEE------------eeCCEEEee
Confidence 4 2321 011234567899999999999997755 887 57999 999
Q ss_pred eeccccccccCccccEEEc
Q 008071 560 HCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 560 HCHil~Hed~GMm~~~~V~ 578 (579)
|||+..|...||...|.|.
T Consensus 486 HCh~~~h~~~Gm~~~~~v~ 504 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVY 504 (536)
T ss_pred eEcchhccccceEEEEEEc
Confidence 9999999999999999874
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1e-70 Score=606.03 Aligned_cols=425 Identities=23% Similarity=0.288 Sum_probs=300.8
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
+|++++.+. .+.++.....+|+|| |++|||+||+++||+|+|+++|+|... +|
T Consensus 3 ~y~~~vt~~--~~~pdG~~~~~~~~N-----g~~pGP~i~~~~Gd~v~v~v~N~l~~~--------------------~t 55 (541)
T TIGR03388 3 HYKWEVEYE--FWSPDCFEKLVIGIN-----GQFPGPTIRAQAGDTIVVELTNKLHTE--------------------GV 55 (541)
T ss_pred EEEEEEEEE--EecCCCeEeeEEEEC-----CcCCCCeEEEEcCCEEEEEEEECCCCC--------------------Cc
Confidence 466666666 344555578899997 999999999999999999999999742 79
Q ss_pred EEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++.+. +||+|+ ++||+|+||++| +|+|+++ ++||||||||.. .|+++||+|+|||+++. +
T Consensus 56 ~iHwHGl~~~~~~~~DG~~~--vtq~~I~PG~s~---~y~f~~~-~~Gt~wyH~H~~----~q~~~Gl~G~liV~~~~-~ 124 (541)
T TIGR03388 56 VIHWHGIRQIGTPWADGTAG--VTQCAINPGETF---IYNFVVD-RPGTYFYHGHYG----MQRSAGLYGSLIVDVPD-G 124 (541)
T ss_pred cEEecCcCCcCCcccCCCCc--cccCCcCCCCEE---EEEEEcC-CCEEEEEEecch----HHhhccceEEEEEecCC-C
Confidence 999999998654 899998 899999999999 9999998 899999999984 69999999999999775 2
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc----------------------
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA---------------------- 281 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~---------------------- 281 (579)
... |-.+++|++|+|+||+++........ ....+ ..+ ...++.++|||+.
T Consensus 125 ~~~--p~~~d~e~~l~l~Dw~~~~~~~~~~~-~~~~~---~~~--~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~ 196 (541)
T TIGR03388 125 EKE--PFHYDGEFNLLLSDWWHKSIHEQEVG-LSSKP---MRW--IGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKG 196 (541)
T ss_pred CCC--CccccceEEEEeecccCCCHHHHHhh-cccCC---CcC--CCCCcceEECCCCCCCCccccccCccccchhhccC
Confidence 222 22368899999999976643221110 00000 001 0134677888762
Q ss_pred ----cC-eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcE
Q 008071 282 ----WP-RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDV 355 (579)
Q Consensus 282 ----~P-~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~ 355 (579)
.| .++|++ ++|||||||+|..+.+.|+| +||+|+|||+||+++ +|+.++.|.|+|||||||+|++++.+++.
T Consensus 197 ~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i-d~h~~~VIa~DG~~v-~P~~v~~l~i~~GqR~dvlv~~~~~~~~~ 274 (541)
T TIGR03388 197 NEQCAPQILHVEPGKTYRLRIASTTALAALNFAI-EGHKLTVVEADGNYV-EPFTVKDIDIYSGETYSVLLTTDQDPSRN 274 (541)
T ss_pred CCCCCceEEEECCCCEEEEEEEcccccceEEEEE-CCCEEEEEEeCCEec-ccceeCeEEecCCCEEEEEEeCCCCCCCc
Confidence 23 378988 99999999999999999999 699999999999999 89999999999999999999998876668
Q ss_pred EEEecCCCCCCCCCCCCCCCCCccEEEEEecCCC-CCC--CCCCC----------CCCCCCC--CCCCCCccceEEEEEe
Q 008071 356 AILANDAPYPYPSGDPVNDANGKVMKFIIKKNHE-LDT--WRVPE----------KLIKYPS--PNPSSASRTRYIAMYE 420 (579)
Q Consensus 356 ~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~-~~~--~~~P~----------~L~~~~~--~~~~~~~~~r~~~l~~ 420 (579)
|+++..... .........+|++|.-..... +.. ...|. .+..+.. ...+.....+++.+..
T Consensus 275 y~ira~~~~----~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (541)
T TIGR03388 275 YWISVGVRG----RKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLN 350 (541)
T ss_pred EEEEEeccc----CCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEec
Confidence 998865421 111111233666653211111 000 00110 0111111 1111112233332211
Q ss_pred eecCCCCcceEEEcCeecCCC--------------------------------------------cccccCCCCeEEEEE
Q 008071 421 YTSDIDEPTHLFINGKSYEEP--------------------------------------------VTETPKAGTSEVWNV 456 (579)
Q Consensus 421 ~~~~~g~~~~~~iNg~~~~~~--------------------------------------------~~~~~~~G~~~~w~l 456 (579)
..........|++||.+|..+ ..+.++.|+++++.|
T Consensus 351 ~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi 430 (541)
T TIGR03388 351 TQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVIL 430 (541)
T ss_pred cCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEE
Confidence 111011234589999887411 013456799999999
Q ss_pred EeCC------CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCc
Q 008071 457 INLT------EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGY 530 (579)
Q Consensus 457 ~N~~------~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~ 530 (579)
.|.+ ...||||||||+||||+++.+ .|+... + . ...+..+|.+||||.|++++
T Consensus 431 ~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g----~~~~~~---~------------~--~~~n~~nP~~RDTv~vp~~g 489 (541)
T TIGR03388 431 QNANTLNGNNSETHPWHLHGHDFWVLGYGEG----KFRPGV---D------------E--KSYNLKNPPLRNTVVIFPYG 489 (541)
T ss_pred ECCccccCCCCCCCcEEecCCceEEEeeccC----CCCccc---C------------c--ccccCCCCCEeceEEeCCCc
Confidence 9974 347999999999999998643 232110 0 1 13456778999999999999
Q ss_pred EEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 531 VTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 531 ~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
++ ++||. ++||| |+|||||++|+..||+.+|..
T Consensus 490 wv--vIRF~------------adNPG~W~~HCHi~~H~~~GM~~~~~e 523 (541)
T TIGR03388 490 WT--ALRFV------------ADNPGVWAFHCHIEPHLHMGMGVVFAE 523 (541)
T ss_pred eE--EEEEE------------CCCCeEeeeeccchhhhhcccEEEEec
Confidence 76 55888 68999 999999999999999999864
No 11
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2.9e-70 Score=598.66 Aligned_cols=426 Identities=16% Similarity=0.159 Sum_probs=302.1
Q ss_pred eEEEeEEEEEEEecCCC--CCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 66 KLKIGMFKKKWKFHRDL--PPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGI 143 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~--~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~ 143 (579)
+|++++.... +.++. ....+|+|| |++|||+||+++||+|+|+++|+|++
T Consensus 29 ~y~~~v~~~~--~~pdg~~~~~~vi~vN-----Gq~PGPtI~~~~GD~v~V~V~N~L~~--------------------- 80 (596)
T PLN00044 29 YYDWEVSYVS--AAPLGGVKKQEAIGIN-----GQFPGPALNVTTNWNLVVNVRNALDE--------------------- 80 (596)
T ss_pred EEEEEEEEEE--EccCCCceeeEEEEEc-----CcCCCCcEEEECCCEEEEEEEeCCCC---------------------
Confidence 5666666653 33443 345799997 99999999999999999999999997
Q ss_pred CeEEeeCCCCCCC--CCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 144 PTVVHLHGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 144 ~t~iH~HG~~~~~--~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
+|+|||||+++.. .+||++ .+||+|+||++| +|+|++..++||||||+|.. .|+.+||+|+|||++++
T Consensus 81 ~ttIHWHGl~q~~t~w~DGv~---~TQcPI~PG~sf---tY~F~~~dq~GT~WYHsH~~----~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 81 PLLLTWHGVQQRKSAWQDGVG---GTNCAIPAGWNW---TYQFQVKDQVGSFFYAPSTA----LHRAAGGYGAITINNRD 150 (596)
T ss_pred CccEEECCccCCCCccccCCC---CCcCCcCCCCcE---EEEEEeCCCCceeEeeccch----hhhhCcCeeEEEEcCcc
Confidence 8999999999874 599986 399999999999 99999966899999999984 69999999999999765
Q ss_pred CCCCCCCCCCCCCceeEEEEeeeeecCCcEEe-cCCCCCCCCCCCCCCCCCCcEEEECCc--------------ccCeEE
Q 008071 222 VETPLRLPSGDEFDRPLVVFDRSFRTDGSIYM-NSTGNNPSIHPQWQPEYFGDAIIVNGK--------------AWPRMT 286 (579)
Q Consensus 222 ~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~-~~~g~~~~~~~~~~~~~~gd~~~VNG~--------------~~P~~~ 286 (579)
+.+.+++..+++|.+|+|+||++.....+.. ...|..+ ...|.++|||+ ..+.++
T Consensus 151 -~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~~---------~~~d~~lING~g~~~~n~~~~~~~~~~~~i~ 220 (596)
T PLN00044 151 -VIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGDLL---------GAPDGVLINAFGPYQYNDSLVPPGITYERIN 220 (596)
T ss_pred -cccccccCCcccceEEEecccccCCHHHHHHHHhcCCCC---------CCCCceEEcccCccccCCccccCCCccceEE
Confidence 3333322222479999999997754333210 0111111 12456677775 235789
Q ss_pred ecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCC
Q 008071 287 VRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYP 365 (579)
Q Consensus 287 v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~ 365 (579)
|++ ++|||||||+|..+.+.|+| +||+|+||++||.++ +|+.++.|.|+|||||||+|++++..+.+|+++......
T Consensus 221 V~~Gk~yRlRiINaa~~~~~~fsI-dgH~mtVIa~DG~~v-~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~ 298 (596)
T PLN00044 221 VDPGKTYRFRVHNVGVATSLNFRI-QGHNLLLVEAEGSYT-SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFV 298 (596)
T ss_pred ECCCCEEEEEEEEccCCceEEEEE-CCCEEEEEEeCCccc-CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccc
Confidence 998 99999999999999999999 599999999999999 899999999999999999999999865579987642110
Q ss_pred CCCCCCCCCCCCccEEEEEecCCCCCC-CCCCC-------------CCCCCCCC----CCCCCccce-EEEEEeee--c-
Q 008071 366 YPSGDPVNDANGKVMKFIIKKNHELDT-WRVPE-------------KLIKYPSP----NPSSASRTR-YIAMYEYT--S- 423 (579)
Q Consensus 366 ~~~g~~~~~~~~~v~~~~v~~~~~~~~-~~~P~-------------~L~~~~~~----~~~~~~~~r-~~~l~~~~--~- 423 (579)
. .+........+|++|.-.......+ ...|. .++..+.. +.++..... .+.+.... .
T Consensus 299 ~-~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 377 (596)
T PLN00044 299 D-AAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQS 377 (596)
T ss_pred c-CccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecc
Confidence 0 0111112334677764221100000 11111 11101110 011111111 11111000 0
Q ss_pred ---CC-CCcceEEEcCeecCCC---cc------------------------------cccCCCCeEEEEEEeCCCCCcee
Q 008071 424 ---DI-DEPTHLFINGKSYEEP---VT------------------------------ETPKAGTSEVWNVINLTEDNHPL 466 (579)
Q Consensus 424 ---~~-g~~~~~~iNg~~~~~~---~~------------------------------~~~~~G~~~~w~l~N~~~~~HP~ 466 (579)
.. .....|+|||.+|..| .. ..++.|++++|.|+|.....|||
T Consensus 378 ~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~ 457 (596)
T PLN00044 378 MAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSY 457 (596)
T ss_pred ccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCe
Confidence 00 1135799999988632 10 13456999999999976679999
Q ss_pred eeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCC
Q 008071 467 HIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNAS 546 (579)
Q Consensus 467 HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~ 546 (579)
|||||+|+||+.+.+ .|+. ..+...+..+|.+||||.|++++++.| ||.
T Consensus 458 HLHGh~F~Vvg~G~G----~~~~------------------~~~~~~Nl~nPp~RdTv~vp~~gW~aI--RF~------- 506 (596)
T PLN00044 458 HLDGYAFFVVGMDYG----LWTD------------------NSRGTYNKWDGVARSTIQVFPGAWTAI--LVF------- 506 (596)
T ss_pred eEcCccEEEEeecCC----CCCC------------------CcccccccCCCCccceEEeCCCCeEEE--EEe-------
Confidence 999999999999755 2321 011345778899999999999998755 887
Q ss_pred CCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 547 YPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 547 ~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+|||| |++||||+.|...||...|.|.
T Consensus 507 -----aDNPG~W~lHCH~~~h~~~Gm~~~~~v~ 534 (596)
T PLN00044 507 -----LDNAGIWNLRVENLDAWYLGQEVYINVV 534 (596)
T ss_pred -----cCCCEEehhhccCchhhcccCcEEEEEe
Confidence 68999 9999999999999999999775
No 12
>PLN02604 oxidoreductase
Probab=100.00 E-value=7.6e-70 Score=600.77 Aligned_cols=425 Identities=21% Similarity=0.262 Sum_probs=299.4
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
+|++++... ...++.....+|+|| |++|||+||+++||+|+|+++|+|... +|
T Consensus 26 ~y~~~vt~~--~~~pdG~~r~~~~~N-----g~~pgP~i~~~~Gd~v~v~v~N~l~~~--------------------~~ 78 (566)
T PLN02604 26 RYKWEVKYE--YKSPDCFKKLVITIN-----GRSPGPTILAQQGDTVIVELKNSLLTE--------------------NV 78 (566)
T ss_pred EEEEEEEEE--EECCCCceeeEEEEC-----CccCCCcEEEECCCEEEEEEEeCCCCC--------------------CC
Confidence 456665555 334555578899997 999999999999999999999998532 79
Q ss_pred EEeeCCCCCCC--CCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~--~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++.+ .+||+++ ++||+|.||++| +|+|+++ ++||||||||.. .|+.+||+|+|||++++ +
T Consensus 79 ~iH~HG~~~~~~~~~DG~~~--~tq~~i~pg~s~---~y~f~~~-~~Gt~wyH~H~~----~q~~~Gl~G~liV~~~~-~ 147 (566)
T PLN02604 79 AIHWHGIRQIGTPWFDGTEG--VTQCPILPGETF---TYEFVVD-RPGTYLYHAHYG----MQREAGLYGSIRVSLPR-G 147 (566)
T ss_pred CEEeCCCCCCCCccccCCCc--cccCccCCCCeE---EEEEEcC-CCEEEEEeeCcH----HHHhCCCeEEEEEEecC-C
Confidence 99999998764 3899998 899999999999 9999997 999999999984 58999999999999765 2
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCc-----------------------
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGK----------------------- 280 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~----------------------- 280 (579)
... |-.+++|.+|+|+||++.......... ...+. .+ ...++..+|||+
T Consensus 148 ~~~--p~~~d~d~~l~l~Dw~~~~~~~~~~~~-~~~~~---~~--~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~ 219 (566)
T PLN02604 148 KSE--PFSYDYDRSIILTDWYHKSTYEQALGL-SSIPF---DW--VGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNP 219 (566)
T ss_pred CCC--ccccCcceEEEeeccccCCHHHHHHhh-ccCCC---cc--CCCCCceEEcCCCCCCCccccCccccccccccCCC
Confidence 222 223588999999999775432211100 00000 00 012355666654
Q ss_pred -cc-CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEE
Q 008071 281 -AW-PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAI 357 (579)
Q Consensus 281 -~~-P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~ 357 (579)
.. +.+++++ ++|||||||+|..+.+.|+| +||+|+|||+||.++ +|++++.|.|++||||||+|++++.+|+.|+
T Consensus 220 ~~~~~~~~v~~g~~~RlRlINa~~~~~~~~si-dgH~~~VIa~DG~~v-~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ 297 (566)
T PLN02604 220 ECSPYVLTVVPGKTYRLRISSLTALSALSFQI-EGHNMTVVEADGHYV-EPFVVKNLFIYSGETYSVLVKADQDPSRNYW 297 (566)
T ss_pred CCCceEEEecCCCEEEEEEEeccccceEEEEE-CCCEEEEEEeCCEec-ccceeeeEEEccCCeEEEEEECCCCCCCCEE
Confidence 12 3678888 89999999999999999999 699999999999999 7999999999999999999999987666899
Q ss_pred EecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCC--CCC-------------CCCCC-CCCCCCccceEEEEEee
Q 008071 358 LANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVP--EKL-------------IKYPS-PNPSSASRTRYIAMYEY 421 (579)
Q Consensus 358 l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P--~~L-------------~~~~~-~~~~~~~~~r~~~l~~~ 421 (579)
++..... .+.......+|++|.-.......+...| ..+ ..... ........++++.+...
T Consensus 298 ira~~~~----~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 373 (566)
T PLN02604 298 VTTSVVS----RNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNT 373 (566)
T ss_pred EEEeccc----CCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEecc
Confidence 8864321 1111123346776642111110000000 000 00000 00111222344433221
Q ss_pred ecCCCCcceEEEcCeecCCCc---------------------------------------------ccccCCCCeEEEEE
Q 008071 422 TSDIDEPTHLFINGKSYEEPV---------------------------------------------TETPKAGTSEVWNV 456 (579)
Q Consensus 422 ~~~~g~~~~~~iNg~~~~~~~---------------------------------------------~~~~~~G~~~~w~l 456 (579)
....+....|.|||..|..+. .+.++.|+++++.|
T Consensus 374 ~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi 453 (566)
T PLN02604 374 QNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIIL 453 (566)
T ss_pred ccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEE
Confidence 111112357999998875210 03456799999999
Q ss_pred EeCC------CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCc
Q 008071 457 INLT------EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGY 530 (579)
Q Consensus 457 ~N~~------~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~ 530 (579)
+|.+ ...||||||||+|+||+++.+ .|+.. ......++.+|.+|||+.|++++
T Consensus 454 ~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G----~~~~~-----------------~~~~~~nl~nP~rRDTv~vp~~g 512 (566)
T PLN02604 454 QNANTMNANNSETHPWHLHGHDFWVLGYGEG----KFNMS-----------------SDPKKYNLVDPIMKNTVPVHPYG 512 (566)
T ss_pred ECCccccCCCCCCCCEEecCCceEEEEecCC----CCCcc-----------------ccccccCCCCCCccceEEeCCCc
Confidence 9975 347999999999999999744 23210 00023456778999999999999
Q ss_pred EEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 531 VTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 531 ~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
++.| ||+ +|||| |+|||||++|+..||+.+|.+
T Consensus 513 wvvI--RF~------------aDNPG~WlfHCHI~~Hl~~GM~~v~~e 546 (566)
T PLN02604 513 WTAL--RFR------------ADNPGVWAFHCHIESHFFMGMGVVFEE 546 (566)
T ss_pred eEEE--EEE------------CCCCeEeeEeecchhHhhcCCEEEEee
Confidence 7655 887 57999 999999999999999999864
No 13
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.7e-70 Score=601.01 Aligned_cols=423 Identities=21% Similarity=0.277 Sum_probs=302.4
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
.+++++.+..+.. +.-...+|+|| |++|||+||+++||+|+|+++|+|+.+ +|
T Consensus 10 ~~~l~v~~~~~~~--~g~~r~~~~~N-----G~~PGP~I~~~~GD~v~V~v~N~L~~~--------------------~t 62 (538)
T TIGR03390 10 DHILRVTSDNIKI--ACSSRYSVVVN-----GTSPGPEIRLQEGQTTWIRVYNDIPDN--------------------NV 62 (538)
T ss_pred cEEEEEEEeEecc--CCeEEEEEEEC-----CcCCCCeEEEeCCCEEEEEEEECCCCC--------------------Cc
Confidence 3566666665554 33367899997 999999999999999999999999843 89
Q ss_pred EEeeCCCCCCC--CCCCCCCccccccccCCCCcceeeeEEEeCC-CCCceeeeecCCCChhhhhhcccceEEEEEEcCCC
Q 008071 146 VVHLHGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNM-QQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDV 222 (579)
Q Consensus 146 ~iH~HG~~~~~--~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~-~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~ 222 (579)
+|||||+++.. .+||+|+ +|||+|+||++| +|+|+++ +++||||||||.. .|.. ||+|+|||++++
T Consensus 63 tiHwHGi~~~~~~~~DGvp~--vTQcpI~PG~sf---~Y~f~~~~~q~GT~WYHsH~~----~Q~~-~l~G~lIV~~~~- 131 (538)
T TIGR03390 63 TMHWHGLTQRTAPFSDGTPL--ASQWPIPPGHFF---DYEIKPEPGDAGSYFYHSHVG----FQAV-TAFGPLIVEDCE- 131 (538)
T ss_pred eEECCCCCCCCCCCCCCCcc--cccCCCCCCCcE---EEEEEecCCCCeeeEEecCCc----hhhh-cceeEEEEccCC-
Confidence 99999999754 4999999 999999999999 9999874 5899999999984 4754 699999999765
Q ss_pred CCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc----------------cCeEE
Q 008071 223 ETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA----------------WPRMT 286 (579)
Q Consensus 223 ~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~----------------~P~~~ 286 (579)
+. |..+|+|++|+|+||+++.++++....... ...|. ...+.++|||+. .+.++
T Consensus 132 ~~----~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~----~~~~~--~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~ 201 (538)
T TIGR03390 132 PP----PYKYDDERILLVSDFFSATDEEIEQGLLST----PFTWS--GETEAVLLNGKSGNKSFYAQINPSGSCMLPVID 201 (538)
T ss_pred cc----CCCccCcEEEEEeCCCCCCHHHHHhhhhcc----CCccC--CCCceEEECCccccccccccccCCCCCcceEEE
Confidence 22 223588999999999887665532110000 00111 135789999995 36789
Q ss_pred ecC-cEEEEEEEecCCCeeEEEEEcCCCe-EEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCC------CcEEEE
Q 008071 287 VRR-RKYRFRIINASNARFYRFFFTNGLR-FIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESK------SDVAIL 358 (579)
Q Consensus 287 v~~-~~~RlRllNa~~~~~~~l~l~~g~~-f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~------g~~~~l 358 (579)
|++ ++|||||||+|+.+.+.|+| +||+ |+||++||+++ +|+.+++|.|+|||||||+|++++.. .+.|++
T Consensus 202 v~~G~~yRlRlINa~~~~~~~~~i-dgH~~~~VIa~DG~~~-~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~i 279 (538)
T TIGR03390 202 VEPGKTYRLRFIGATALSLISLGI-EDHENLTIIEADGSYT-KPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFI 279 (538)
T ss_pred ECCCCEEEEEEEccCCceEEEEEE-CCCCeEEEEEeCCCCC-CceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEE
Confidence 998 89999999999999999999 6999 99999999976 99999999999999999999999752 247888
Q ss_pred ecCCCCCCCCCCCCCCCCCccEEEEEecCCCCC--CC--CCC----------CCCCCCCCCC----CCCCccceEEEEEe
Q 008071 359 ANDAPYPYPSGDPVNDANGKVMKFIIKKNHELD--TW--RVP----------EKLIKYPSPN----PSSASRTRYIAMYE 420 (579)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~--~~--~~P----------~~L~~~~~~~----~~~~~~~r~~~l~~ 420 (579)
+.... +........+|++|.-....... +. .++ ..|.|+.... +.....++++.+..
T Consensus 280 r~~~~-----~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~ 354 (538)
T TIGR03390 280 QFETR-----DRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDA 354 (538)
T ss_pred EEeec-----CCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEc
Confidence 76531 11111123466666322111100 00 000 1233433210 11122244444332
Q ss_pred eecC--CCCcceEEEcCeecCCC-----c-----------------------------ccccCCCCeEEEEEEeCC----
Q 008071 421 YTSD--IDEPTHLFINGKSYEEP-----V-----------------------------TETPKAGTSEVWNVINLT---- 460 (579)
Q Consensus 421 ~~~~--~g~~~~~~iNg~~~~~~-----~-----------------------------~~~~~~G~~~~w~l~N~~---- 460 (579)
.... ......|+|||.+|... . ...++.|+++++.|+|..
T Consensus 355 ~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~ 434 (538)
T TIGR03390 355 HQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTG 434 (538)
T ss_pred cccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcCceEEEcCCCCEEEEEEECCccccc
Confidence 2111 11235799999988621 0 123577899999999974
Q ss_pred ----CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeC---------
Q 008071 461 ----EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMT--------- 527 (579)
Q Consensus 461 ----~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~--------- 527 (579)
...||||||||+|+||+++.+ .|+... + . ...+..+|.+|||+.|+
T Consensus 435 ~~~~~~~HP~HlHGh~F~vlg~G~G----~~~~~~---~------------~--~~~nl~nP~rRDTv~vp~~~~~~~~~ 493 (538)
T TIGR03390 435 PNGGVDTHPFHAHGRHFYDIGGGDG----EYNATA---N------------E--AKLENYTPVLRDTTMLYRYAVKVVPG 493 (538)
T ss_pred CCCCCCCCCeeecCCcEEEEccccc----ccCCcc---C------------h--hhhccCCCCeecceeecccccccccc
Confidence 468999999999999998644 232100 0 0 12234578999999996
Q ss_pred -CCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 528 -PGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 528 -p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
|++++ ++||. ++||| |+|||||.+|...||+.+|.|.
T Consensus 494 ~~~~~~--~ir~~------------~dNPG~W~~HCHi~~H~~~Gm~~~~~~~ 532 (538)
T TIGR03390 494 APAGWR--AWRIR------------VTNPGVWMMHCHILQHMVMGMQTVWVFG 532 (538)
T ss_pred CCCceE--EEEEE------------cCCCeeEEEeccchhhhhccceEEEEeC
Confidence 66765 55777 57999 9999999999999999999885
No 14
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.8e-69 Score=596.59 Aligned_cols=429 Identities=22% Similarity=0.282 Sum_probs=298.6
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++.... +.++.....+|+|| |++|||+||+++||+|+|+++|+|+.. +|
T Consensus 25 ~~~~~vt~~~--~~pdG~~~~v~~vN-----g~~pGP~i~~~~Gd~v~v~v~N~l~~~--------------------~t 77 (574)
T PLN02191 25 EYTWEVEYKY--WWPDCKEGAVMTVN-----GQFPGPTIDAVAGDTIVVHLTNKLTTE--------------------GL 77 (574)
T ss_pred EEEEEEEEEE--eccCCceeeEEEEC-----CcCCCCeEEEEcCCEEEEEEEECCCCC--------------------Cc
Confidence 5666666653 34555578999997 999999999999999999999999853 79
Q ss_pred EEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++.+. +||+|+ ++||+|+||++| +|+|+++ ++||||||||.. .|+++||+|+|||+++. +
T Consensus 78 siHwHGl~~~~~~~~DGv~g--vtq~pI~PG~s~---~Y~f~~~-~~GT~wYHsH~~----~q~~~Gl~G~liV~~~~-~ 146 (574)
T PLN02191 78 VIHWHGIRQKGSPWADGAAG--VTQCAINPGETF---TYKFTVE-KPGTHFYHGHYG----MQRSAGLYGSLIVDVAK-G 146 (574)
T ss_pred cEECCCCCCCCCccccCCCc--cccCCcCCCCeE---EEEEECC-CCeEEEEeeCcH----HHHhCCCEEEEEEccCC-C
Confidence 999999998765 899999 999999999999 9999997 899999999974 69999999999999654 2
Q ss_pred CCCCCCCCCCCceeEEEEeeeeecCCcE------------------EecCCCCCCCCCC-CCCCCCCC--cEEEECCccc
Q 008071 224 TPLRLPSGDEFDRPLVVFDRSFRTDGSI------------------YMNSTGNNPSIHP-QWQPEYFG--DAIIVNGKAW 282 (579)
Q Consensus 224 ~~~~lp~~~~~e~~lvl~D~~~~~~g~~------------------~~~~~g~~~~~~~-~~~~~~~g--d~~~VNG~~~ 282 (579)
... |..+|+|++|+|+||++...... ..+..|....... ....+..+ ..+++||+..
T Consensus 147 ~~~--~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 224 (574)
T PLN02191 147 PKE--RLRYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCA 224 (574)
T ss_pred CCC--CCCCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCC
Confidence 111 22368899999999976431110 0111110000000 00000011 1456777666
Q ss_pred C-eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEec
Q 008071 283 P-RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAN 360 (579)
Q Consensus 283 P-~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~ 360 (579)
| .++|++ ++|||||||+|+.+.+.|+| +||+|+||++||.++ +|+.+++|.|++||||||+|++++.++++|+++.
T Consensus 225 p~~~~v~~G~~yRlRiINa~~~~~~~~~i-dgH~~tVIa~DG~~v-~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira 302 (574)
T PLN02191 225 PQTLRVEPNKTYRIRLASTTALASLNLAV-QGHKLVVVEADGNYI-TPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISV 302 (574)
T ss_pred ceEEEEcCCCEEEEEEEecCCceeEEEEE-CCCeEEEEEcCCeec-cceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEE
Confidence 6 599998 99999999999999999999 699999999999999 9999999999999999999999987666899887
Q ss_pred CCCCCCCCCCCCCCCCCccEEEEEecCCCCCCC---CCCC----------CCCCCCC---CCCCCCccceEEEEEeeecC
Q 008071 361 DAPYPYPSGDPVNDANGKVMKFIIKKNHELDTW---RVPE----------KLIKYPS---PNPSSASRTRYIAMYEYTSD 424 (579)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~---~~P~----------~L~~~~~---~~~~~~~~~r~~~l~~~~~~ 424 (579)
.... .........+|++|........... ..|. .+.++.. +..+....++.+.+.. ...
T Consensus 303 ~~~~----~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~ 377 (574)
T PLN02191 303 GVRG----RKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT-QNL 377 (574)
T ss_pred Eccc----cCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc-cce
Confidence 5321 1111111235666632221110000 0110 0001110 1111111233332221 110
Q ss_pred CCCcceEEEcCeecCCC---c-----------------------------------------ccccCCCCeEEEEEEeCC
Q 008071 425 IDEPTHLFINGKSYEEP---V-----------------------------------------TETPKAGTSEVWNVINLT 460 (579)
Q Consensus 425 ~g~~~~~~iNg~~~~~~---~-----------------------------------------~~~~~~G~~~~w~l~N~~ 460 (579)
......|.|||.+|..+ . .+.++.|+++++.|.|..
T Consensus 378 ~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~ 457 (574)
T PLN02191 378 IDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNAN 457 (574)
T ss_pred eCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCC
Confidence 11234689999877421 0 012344899999999975
Q ss_pred ------CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEE
Q 008071 461 ------EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKI 534 (579)
Q Consensus 461 ------~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i 534 (579)
...||||||||+|+||+++.+ .|+.. .+ . ...+..+|.+|||+.|++++++
T Consensus 458 ~~~~~~~~~HP~HLHGh~F~Vlg~G~g----~~~~~---~~------------~--~~~nl~nP~rRDTv~vp~~Gw~-- 514 (574)
T PLN02191 458 VLKGVVSEIHPWHLHGHDFWVLGYGDG----KFKPG---ID------------E--KTYNLKNPPLRNTAILYPYGWT-- 514 (574)
T ss_pred cccCCCCCCCCEEeCCCCeEEEEecCC----CCCcc---cC------------c--ccccCCCCCcCCeEEeCCCCEE--
Confidence 568999999999999999754 23210 00 0 1245678899999999999976
Q ss_pred EEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEE
Q 008071 535 LVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLK 576 (579)
Q Consensus 535 ~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~ 576 (579)
++||+ +|||| |+|||||.+|...||..+|.
T Consensus 515 vIRf~------------aDNPG~Wl~HCHi~~Hl~~Gm~~~~~ 545 (574)
T PLN02191 515 AIRFV------------TDNPGVWFFHCHIEPHLHMGMGVVFA 545 (574)
T ss_pred EEEEE------------CCCCEEEEEecCchhhhhcCCEEEEe
Confidence 55888 68999 99999999999999998874
No 15
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-64 Score=548.89 Aligned_cols=405 Identities=29% Similarity=0.425 Sum_probs=299.2
Q ss_pred EEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeE
Q 008071 67 LKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTV 146 (579)
Q Consensus 67 ~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~ 146 (579)
..+......+.+.... .+..|+|+ |++|||+||+++||+|+|+++|.|++ +|+
T Consensus 35 ~~~~~~~~~~~~~~~~-~~~~~~~~-----g~~~gP~i~~~~Gd~v~l~~~N~l~~---------------------~t~ 87 (451)
T COG2132 35 TFLTAQRAQLAFAPGT-GATVWGYN-----GALPGPTIRVKKGDTVTLDLTNRLLV---------------------DTS 87 (451)
T ss_pred eEEeecccceeeecCC-CceeEEec-----ccccCceEEEecCCEEEEEEEeCCCC---------------------Cce
Confidence 4455556666665555 78999998 89999999999999999999999997 599
Q ss_pred EeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCC
Q 008071 147 VHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPL 226 (579)
Q Consensus 147 iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~ 226 (579)
+||||+.+++.+||++. .+++.+.||+++ +|.|+.+ .+||||||+|.++ |+++||+|++||+|++++
T Consensus 88 vh~HG~~~p~~~dG~~~--~~~~~~~~~~~~---~y~f~~~-~~gT~wyh~H~~~----Q~~~Gl~G~~II~~~~~~--- 154 (451)
T COG2132 88 VHWHGLPVPGEMDGVPP--LTQIPPGPGETP---TYTFTQD-VPGTYWYHPHTHG----QVYDGLAGALIIEDENSE--- 154 (451)
T ss_pred EEEcCcccCccccCCCc--ccccCCCCCCcE---EEeecCC-CCcceEeccCCCc----hhhcccceeEEEeCCCCC---
Confidence 99999999999999877 778778888888 9999998 5669999999996 999999999999977632
Q ss_pred CCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEE
Q 008071 227 RLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYR 306 (579)
Q Consensus 227 ~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~ 306 (579)
|.+ .+|.+++++|..++.++...+.. ..++.++.|++.+|||+.+|++.++.++|||||+|+++.+.+.
T Consensus 155 --~~~-~d~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~vnG~~~p~~~~~~g~~rlRl~n~~~~~~~~ 223 (451)
T COG2132 155 --PLG-VDDEPVILQDDWLDEDGTDLYQE--------GPAMGGFPGDTLLVNGAILPFKAVPGGVVRLRLLNAGNARTYH 223 (451)
T ss_pred --CCC-CCceEEEEEeeeecCCCCccccC--------CccccCCCCCeEEECCCccceeecCCCeEEEEEEecCCceEEE
Confidence 224 45666677766677777765432 1334567799999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEec
Q 008071 307 FFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKK 386 (579)
Q Consensus 307 l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~ 386 (579)
+++. |++|+||++||+++++ +.++.+.|+||||+||+|++.+. +.+.|.+.... ..............++.....
T Consensus 224 ~~~~-~~~~~Vi~~DG~~v~~-~~~d~~~l~p~er~~v~v~~~~~--~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (451)
T COG2132 224 LALG-GGPLTVIAVDGGPLPP-VSVDELYLAPGERYEVLVDMNDG--GAVTLTALGED-MPDTLKGFRAPNPILTPSYPV 298 (451)
T ss_pred EEec-CceEEEEEeCCcCcCc-eeeeeEEecCcceEEEEEEcCCC--CeEEEEecccc-CCceeeeeecccccccccccc
Confidence 9996 9999999999999955 99999999999999999999983 37777665411 000000000000000000000
Q ss_pred CCCCCCCCCCCCC---CCC---CCCCC-CC-CccceEEEEEeeecCCCCcceEEEcCeecCC-CcccccCCCCeEEEEEE
Q 008071 387 NHELDTWRVPEKL---IKY---PSPNP-SS-ASRTRYIAMYEYTSDIDEPTHLFINGKSYEE-PVTETPKAGTSEVWNVI 457 (579)
Q Consensus 387 ~~~~~~~~~P~~L---~~~---~~~~~-~~-~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~-~~~~~~~~G~~~~w~l~ 457 (579)
... ....+... ... ..... .. ......+.+.. ......|.+|++.|++ +.++.++.|++++|+|.
T Consensus 299 ~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~ 372 (451)
T COG2132 299 LNG--RVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG----GIGGYVWAINGKAFDDNRVTLIAKAGTRERWVLT 372 (451)
T ss_pred ccc--cccCCCcchhhccccccchhhcCCCcccccccchhhc----ccccccccccCccCCCCcCceeecCCCEEEEEEE
Confidence 000 00000000 000 00000 00 11112222211 1124569999999995 78889999999999999
Q ss_pred eCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEE
Q 008071 458 NLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVR 537 (579)
Q Consensus 458 N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~r 537 (579)
|.+.+.|||||||+.|+|++.+. +.....+.||||+.+.|++.+ +++
T Consensus 373 n~~~~~HP~HlHg~~F~v~~~~~-------------------------------~~~~~~~~~kDTv~v~~~~~~--~v~ 419 (451)
T COG2132 373 NDTPMPHPFHLHGHFFQVLSGDA-------------------------------PAPGAAPGWKDTVLVAPGERL--LVR 419 (451)
T ss_pred CCCCCccCeEEcCceEEEEecCC-------------------------------CcccccCccceEEEeCCCeEE--EEE
Confidence 99999999999999999998730 111234589999999999755 557
Q ss_pred EeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 538 FSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 538 f~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
|+ +++|| ||||||+++|+|+|||..++|.
T Consensus 420 ~~------------a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 420 FD------------ADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred Ee------------CCCCCceEEeccchhHhhcCCeeEEEec
Confidence 76 35788 9999999999999999999985
No 16
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9e-60 Score=510.51 Aligned_cols=408 Identities=23% Similarity=0.354 Sum_probs=290.9
Q ss_pred CcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC--CCCCC
Q 008071 84 PTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP--ESDGN 161 (579)
Q Consensus 84 ~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~--~~DG~ 161 (579)
+-.+.+- ||++|||+|+|++||+|.|++.|++.+ +++|||||+++.. .+||
T Consensus 46 ~~~vi~i-----NG~fPGP~I~~~~gD~ivV~v~N~~~~---------------------~~sihWhGv~q~kn~w~DG- 98 (563)
T KOG1263|consen 46 EKQVITI-----NGQFPGPTINAEEGDTIVVNVVNRLDE---------------------PFSIHWHGVRQRKNPWQDG- 98 (563)
T ss_pred cceeEee-----cCCCCCCeEEEEeCCEEEEEEEeCCCC---------------------ceEEEeccccccCCccccC-
Confidence 3455555 599999999999999999999999997 8999999998864 4899
Q ss_pred CCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEE
Q 008071 162 ANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVF 241 (579)
Q Consensus 162 p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~ 241 (579)
+. +|||||+||++| +|+|+++.+.||||||+|.. .|.++|++|+|||+++. ..+.+.|. +++|++|+++
T Consensus 99 ~~--~TqCPI~Pg~~~---tY~F~v~~q~GT~~yh~h~~----~~Ra~G~~G~liI~~~~-~~p~pf~~-pd~E~~ill~ 167 (563)
T KOG1263|consen 99 VY--ITQCPIQPGENF---TYRFTVKDQIGTLWYHSHVS----WQRATGVFGALIINPRP-GLPVPFPK-PDKEFTILLG 167 (563)
T ss_pred Cc--cccCCcCCCCeE---EEEEEeCCcceeEEEeeccc----cccccCceeEEEEcCCc-cCCCCCCC-CCceeEEEeE
Confidence 66 999999999999 99999999999999999996 68899999999999655 44455554 3899999999
Q ss_pred eeeeecCCcE---EecCCCCCCCCCCCCCCCCCCcEEEECCccc------CeEEecC-cEEEEEEEecCCCeeEEEEEcC
Q 008071 242 DRSFRTDGSI---YMNSTGNNPSIHPQWQPEYFGDAIIVNGKAW------PRMTVRR-RKYRFRIINASNARFYRFFFTN 311 (579)
Q Consensus 242 D~~~~~~g~~---~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~------P~~~v~~-~~~RlRllNa~~~~~~~l~l~~ 311 (579)
||+.+.+-.. .....+..|. ..|.++|||+.. +.++|++ ++|||||+|++.+..+.|++ .
T Consensus 168 dW~~~~~~~~l~~~~~~~~~~p~---------~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I-~ 237 (563)
T KOG1263|consen 168 DWYKNLNHKNLKNFLDRTGALPN---------PSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSI-A 237 (563)
T ss_pred eeccccCHHHHHHhhccCCCCCC---------CCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEE-C
Confidence 9965322111 1122222221 158999999984 4689998 99999999999999999999 4
Q ss_pred CCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCC
Q 008071 312 GLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELD 391 (579)
Q Consensus 312 g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~ 391 (579)
||.|++|++||.++ +|...++|.|.||||+||+|++++..+ .|++.......-. ...-......++++. ++....
T Consensus 238 ~H~ltvVe~Dg~y~-~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~-~~~~~~t~~~~l~y~--~~~~~~ 312 (563)
T KOG1263|consen 238 NHQLTVVEVDGAYT-KPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDAS-NVPFNLTTTGILRYS--GSTHPA 312 (563)
T ss_pred CeEEEEEEecceEE-eeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccC-CcceeeeEEEEEEEe--CCcccC
Confidence 99999999999999 999999999999999999999999987 7777654321000 000011223444443 211111
Q ss_pred CCC------CCC------------CCCCC-----CCCCCCCCc------cceEEEEEeeecCCCCcceEEEcCeecCCCc
Q 008071 392 TWR------VPE------------KLIKY-----PSPNPSSAS------RTRYIAMYEYTSDIDEPTHLFINGKSYEEPV 442 (579)
Q Consensus 392 ~~~------~P~------------~L~~~-----~~~~~~~~~------~~r~~~l~~~~~~~g~~~~~~iNg~~~~~~~ 442 (579)
... +|. .++.+ +.+.+.... ..+.+.+-......+....+.||+..|..|.
T Consensus 313 s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~ 392 (563)
T KOG1263|consen 313 SEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPK 392 (563)
T ss_pred cccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCC
Confidence 111 111 11111 111111111 1111111111101233455777776654221
Q ss_pred --------------------------------------ccccCCCCeEEEEEEeCCC---CCceeeeeeccEEEEeEech
Q 008071 443 --------------------------------------TETPKAGTSEVWNVINLTE---DNHPLHIHLGLFVVLDQREL 481 (579)
Q Consensus 443 --------------------------------------~~~~~~G~~~~w~l~N~~~---~~HP~HlHg~~Fqvl~~~~~ 481 (579)
...++.++.++..|+|.+. ..|||||||++|+|++.+.+
T Consensus 393 tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G 472 (563)
T KOG1263|consen 393 TPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFG 472 (563)
T ss_pred CchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEeccc
Confidence 0245678999999999764 47999999999999999654
Q ss_pred hhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEe
Q 008071 482 VKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYH 560 (579)
Q Consensus 482 ~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~H 560 (579)
.|+.. + +.....+..++..||||.|+||+++.| ||. +|||| |.+|
T Consensus 473 ----~~~~~--------~--------d~~~~yNl~dp~~R~Tv~V~pggw~aI--rf~------------adNPG~W~~H 518 (563)
T KOG1263|consen 473 ----NWDPA--------K--------DPRKKYNLVDPVSRDTVQVPPGGWTAI--RFV------------ADNPGVWLMH 518 (563)
T ss_pred ----ccCcC--------c--------ChhhhcccCCCcccceEEeCCCCEEEE--EEE------------cCCCcEEEEE
Confidence 22210 0 111334667889999999999998766 666 56999 9999
Q ss_pred eccccccccCccccEEEc
Q 008071 561 CHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 561 CHil~Hed~GMm~~~~V~ 578 (579)
|||.+|...||...|+|.
T Consensus 519 CHie~H~~~G~~~~f~V~ 536 (563)
T KOG1263|consen 519 CHIEDHLYLGMETVFIVG 536 (563)
T ss_pred EecHHHHhccCeEEEEEe
Confidence 999999999999999985
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.3e-43 Score=364.62 Aligned_cols=246 Identities=17% Similarity=0.206 Sum_probs=202.7
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+++|++++.++++.++. .+.+|+|| |++|||+||+++||+|+|+|+|++... .+
T Consensus 28 ~~~~l~a~~~~~~~~~G~-~~~~~~~n-----G~~pGP~irv~~Gd~v~v~v~N~~~~~-------------------~~ 82 (311)
T TIGR02376 28 VEVTMTIEEKKMVIDDGV-TYQAMTFD-----GSVPGPLIRVHEGDYVELTLINPPTNT-------------------MP 82 (311)
T ss_pred EEEEEEEEEEEEEeCCCe-EEEEEEEC-----CcccCceEEEECCCEEEEEEEeCCCCC-------------------Cc
Confidence 578999999988987676 78999997 999999999999999999999998631 17
Q ss_pred eEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCC
Q 008071 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVET 224 (579)
Q Consensus 145 t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~ 224 (579)
+++||||.. .+||.+. +++ |.||+++ +|+|.++ ++||||||||.++.+..|+++||+|+|||++++ .
T Consensus 83 h~~h~H~~~---~~dg~~~--~~~--I~PG~t~---ty~F~~~-~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~-~- 149 (311)
T TIGR02376 83 HNVDFHAAT---GALGGAA--LTQ--VNPGETA---TLRFKAT-RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE-G- 149 (311)
T ss_pred eeeeecCCC---ccCCCCc--cee--ECCCCeE---EEEEEcC-CCEEEEEEcCCCCchhHHhhcCcceEEEeeccC-C-
Confidence 999999963 4688776 666 8999999 9999998 899999999999878899999999999999543 2
Q ss_pred CCCCCCCCCCceeEEEEeeeeecCCcEE--ecCCCCCCCCCCCCCCCCCCcEEEECCccc---CeEEecC-cEEEEEEEe
Q 008071 225 PLRLPSGDEFDRPLVVFDRSFRTDGSIY--MNSTGNNPSIHPQWQPEYFGDAIIVNGKAW---PRMTVRR-RKYRFRIIN 298 (579)
Q Consensus 225 ~~~lp~~~~~e~~lvl~D~~~~~~g~~~--~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~---P~~~v~~-~~~RlRllN 298 (579)
+|. +++|++|+++||+++.++... +... ..++....+++++|||+.. |.+++++ +++||||+|
T Consensus 150 ---~~~-~d~e~~l~l~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiN 218 (311)
T TIGR02376 150 ---LPE-YDKEYYIGESDLYTPKDEGEGGAYEDD-------VAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVH 218 (311)
T ss_pred ---CcC-cceeEEEeeeeEeccccccccccccch-------HHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEc
Confidence 233 488999999999887654321 1100 0001123468999999964 5678887 999999999
Q ss_pred cCCCeeEEEEEcCCCeEEEEecCCCccCccE-EecEEEeCcceEEEEEEEcCCCCCcEEEEecCC
Q 008071 299 ASNARFYRFFFTNGLRFIHVAADSAYLGRPV-VTNETLLAPSEIADVVIDFSESKSDVAILANDA 362 (579)
Q Consensus 299 a~~~~~~~l~l~~g~~f~via~DG~~l~~p~-~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~ 362 (579)
+|+++.+.||+. |+.|++|+.||+++..|. .++++.|+||||+||+|+++++ | .|.+++..
T Consensus 219 a~~~~~~~~~~~-g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~p-G-~y~~~~~~ 280 (311)
T TIGR02376 219 SQPNRDSRPHLI-GGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQP-G-VYAYVDHN 280 (311)
T ss_pred CCCCCCCCCeEe-cCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCCC-e-EEEEECcH
Confidence 999999999994 999999999999997666 5899999999999999999985 3 78887753
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.97 E-value=1.9e-31 Score=235.34 Aligned_cols=112 Identities=33% Similarity=0.544 Sum_probs=99.8
Q ss_pred EEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCC
Q 008071 72 FKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHG 151 (579)
Q Consensus 72 ~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG 151 (579)
++.++.+..+ ..++|+|| |++|||+||+++||+|+|+|+|+|.. +++|||||
T Consensus 3 ~~~~~~~~~~--~~~~~~~n-----g~~pGPtI~v~~Gd~v~i~~~N~l~~---------------------~~siH~HG 54 (117)
T PF07732_consen 3 TETTVSPDGG--TRKVWTYN-----GQFPGPTIRVREGDTVRITVTNNLDE---------------------PTSIHWHG 54 (117)
T ss_dssp EEEEEETTST--EEEEEEET-----TBSSEEEEEEETTEEEEEEEEEESSS---------------------GBSEEEET
T ss_pred eEEEEEeCCc--EEEEEEEC-----CCCCCCEEEEEcCCeeEEEEEecccc---------------------ccccccce
Confidence 4555566433 38999997 99999999999999999999999987 89999999
Q ss_pred CCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 152 GIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 152 ~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
++.++. +||+++ .++|+|.||++| +|+|++++++||||||||.++ |..+||+|+|||+++
T Consensus 55 ~~~~~~~~~DG~~~--~~~~~i~pG~~~---~Y~~~~~~~~Gt~wYH~H~~~----~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 55 LHQPPSPWMDGVPG--VTQCPIAPGESF---TYEFTANQQAGTYWYHSHVHG----QQVMGLYGAIIVEPP 116 (117)
T ss_dssp SBSTTGGGGSGGTT--TSGSSBSTTEEE---EEEEEESSCSEEEEEEECSTT----HHHTTEEEEEEEE-T
T ss_pred eeeeeeeecCCccc--ccceeEEeecce---eeeEeeeccccceeEeeCCCc----hhcCcCEEEEEEcCC
Confidence 999988 999998 789999999999 999999977999999999987 555999999999954
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.92 E-value=1.4e-25 Score=204.78 Aligned_cols=107 Identities=26% Similarity=0.428 Sum_probs=85.9
Q ss_pred eecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCccccccc
Q 008071 436 KSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSE 515 (579)
Q Consensus 436 ~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~ 515 (579)
..+.......++.|++++|.|.|.+.+.|||||||++|||++++... ++ + ......++
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~----~~-------~-----------~~~~~~~~ 85 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGP----WN-------P-----------DDTQSYNP 85 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEE----ST-------T-----------HCGGCCCS
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcc----cc-------c-----------cccccccc
Confidence 44445667889999999999999999999999999999999996431 00 0 01133456
Q ss_pred ccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 516 HEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 516 ~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.++.||||+.|+++++++|+++++ ||| |+|||||++|||.|||++|+|.
T Consensus 86 ~~~~~~DTv~v~~~~~~~i~~~~~--------------~~G~w~~HCHi~~H~~~GM~~~~~v~ 135 (138)
T PF07731_consen 86 ENPGWRDTVLVPPGGWVVIRFRAD--------------NPGPWLFHCHILEHEDNGMMAVFVVG 135 (138)
T ss_dssp SSSSEESEEEEETTEEEEEEEEET--------------STEEEEEEESSHHHHHTT-EEEEEEC
T ss_pred ccCcccccccccceeEEEEEEEee--------------cceEEEEEEchHHHHhCCCeEEEEEc
Confidence 788999999999999887755553 889 9999999999999999999985
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.78 E-value=7.4e-19 Score=164.29 Aligned_cols=119 Identities=23% Similarity=0.387 Sum_probs=92.3
Q ss_pred ceeEEEEeeeeecCCcEEe--cCCCCCCCCCCCCCCCCCCcEEEECCc-------------ccCeEEecC-cEEEEEEEe
Q 008071 235 DRPLVVFDRSFRTDGSIYM--NSTGNNPSIHPQWQPEYFGDAIIVNGK-------------AWPRMTVRR-RKYRFRIIN 298 (579)
Q Consensus 235 e~~lvl~D~~~~~~g~~~~--~~~g~~~~~~~~~~~~~~gd~~~VNG~-------------~~P~~~v~~-~~~RlRllN 298 (579)
|++|+++||+.+....+.. ...+..+ .. ....++.++|||+ ..+.+.+++ ++|||||||
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~~~~---~~--~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliN 76 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPGKGP---MG--MPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLIN 76 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCHHHS---HS--CTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEE
T ss_pred eEEEEEeECCCCCHHHhhhhhccccccc---cC--CCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEe
Confidence 8899999997544333321 1111000 00 1346799999995 347899999 899999999
Q ss_pred cCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 299 ASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 299 a~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
+|+.+.+.|++ +||+|+||+.||.++ +|..+++|.|+|||||||+|++++. .++|+|+..
T Consensus 77 a~~~~~~~~~i-~gh~~~Via~DG~~v-~p~~~~~l~l~~G~R~dvlv~~~~~-~g~y~i~~~ 136 (159)
T PF00394_consen 77 AGASTSFNFSI-DGHPMTVIAADGVPV-EPYKVDTLVLAPGQRYDVLVTADQP-PGNYWIRAS 136 (159)
T ss_dssp ESSS-BEEEEE-TTBCEEEEEETTEEE-EEEEESBEEE-TTEEEEEEEEECSC-SSEEEEEEE
T ss_pred ccCCeeEEEEe-eccceeEeeeccccc-cccccceEEeeCCeEEEEEEEeCCC-CCeEEEEEe
Confidence 99999999999 599999999999999 5999999999999999999999984 348988873
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.63 E-value=4.6e-15 Score=135.99 Aligned_cols=94 Identities=21% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCccEEEEECCCEEEEEEEcCCCC-CCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCC--CCCCCCCCccccccccCCC-
Q 008071 99 VPGPTIEALHGIDTYVTWQNHLPS-KHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDE--PESDGNANSWFTAGFKEKG- 174 (579)
Q Consensus 99 ~PGPtI~v~~Gd~v~v~~~N~l~~-~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~--~~~DG~p~~~~t~~~i~PG- 174 (579)
.+||+|++++||+|+|+++|.+.. .| ...||+||...+ +.+||++. .+++++.|+
T Consensus 49 ~~~P~I~v~~Gd~V~v~v~N~~~~~~H-------------------~~~I~~~g~~~~~~p~mdG~~~--~~~~~i~p~~ 107 (148)
T TIGR03095 49 LKNPTIVIPEGVTVHFTVINTDTDSGH-------------------NFDISKRGPPYPYMPGMDGLGF--VAGTGFLPPP 107 (148)
T ss_pred CCCCEEEEcCCCEEEEEEEeCCCCccc-------------------cEEeecCCCccccccccCCCCc--cccCcccCCC
Confidence 789999999999999999999663 11 588899988654 55899986 777777664
Q ss_pred --CcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 175 --PTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 175 --~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
..+.+.++.|+.+ ++||||||||..+ |..+||+|.|||+
T Consensus 108 ~~g~~~~~~~tf~f~-~aGtywyhC~~pg----H~~~GM~G~iiV~ 148 (148)
T TIGR03095 108 KSGKFGYTDFTYHFS-TAGTYWYLCTYPG----HAENGMYGKIVVK 148 (148)
T ss_pred CCCccceeEEEEECC-CCeEEEEEcCChh----HHHCCCEEEEEEC
Confidence 2221125667766 8999999999864 7779999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.53 E-value=1.6e-12 Score=134.16 Aligned_cols=222 Identities=18% Similarity=0.188 Sum_probs=147.6
Q ss_pred CcEEEECCccc-CeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEc
Q 008071 272 GDAIIVNGKAW-PRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDF 348 (579)
Q Consensus 272 gd~~~VNG~~~-P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~ 348 (579)
-+.+++||+.- |.|.++. +++++++.|.... ..+++|+ |++. +.||+.. ...|.|||++.+-+++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~-H~~~----~~dg~~~-------~~~I~PG~t~ty~F~~ 114 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDF-HAAT----GALGGAA-------LTQVNPGETATLRFKA 114 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeee-cCCC----ccCCCCc-------ceeECCCCeEEEEEEc
Confidence 35789999964 8999988 9999999998642 4578888 6753 4577532 1238999999999988
Q ss_pred CCCCCcEEEEecCCC----CCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee--
Q 008071 349 SESKSDVAILANDAP----YPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT-- 422 (579)
Q Consensus 349 ~~~~g~~~~l~~~~~----~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~-- 422 (579)
++++ +|+...... .....| -.-.+.|..... .|. .+++..+.+.+..
T Consensus 115 ~~~G--ty~YH~H~~~~~~~q~~~G--------l~G~liV~~~~~-----~~~------------~d~e~~l~l~d~~~~ 167 (311)
T TIGR02376 115 TRPG--AFVYHCAPPGMVPWHVVSG--------MNGAIMVLPREG-----LPE------------YDKEYYIGESDLYTP 167 (311)
T ss_pred CCCE--EEEEEcCCCCchhHHhhcC--------cceEEEeeccCC-----CcC------------cceeEEEeeeeEecc
Confidence 7653 788766531 011111 111233433211 110 0111111111100
Q ss_pred -------------c--CCCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCC-CCceeeeeeccEEEEeEechhhhHH
Q 008071 423 -------------S--DIDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTE-DNHPLHIHLGLFVVLDQRELVKLEE 486 (579)
Q Consensus 423 -------------~--~~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~-~~HP~HlHg~~Fqvl~~~~~~~~~~ 486 (579)
. ....+..++|||+.+.-.....++.|++++|.|+|.+. ..+.||++|++|.++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~D------- 240 (311)
T TIGR02376 168 KDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVT------- 240 (311)
T ss_pred ccccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEEC-------
Confidence 0 01223468999997543223578999999999999876 479999999999999873
Q ss_pred hhhhhhccCCcccccccccccCcccccccccCc-ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccc
Q 008071 487 FKACMTKYNDAIKCHISKYARGKKLEVSEHEKG-WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVL 564 (579)
Q Consensus 487 ~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~-~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil 564 (579)
|.+..+ +. ..|++.|.||+...|.++++ +|| |++|||..
T Consensus 241 ---------------------G~~~~~----~~~~~~~~~i~PG~R~dv~v~~~--------------~pG~y~~~~~~~ 281 (311)
T TIGR02376 241 ---------------------GKFANP----PNRDVETWFIPGGSAAAALYTFE--------------QPGVYAYVDHNL 281 (311)
T ss_pred ---------------------CcccCC----CCCCcceEEECCCceEEEEEEeC--------------CCeEEEEECcHH
Confidence 321211 12 47999999999999988876 567 99999999
Q ss_pred ccc-ccCccccEEEc
Q 008071 565 DHE-DNVMMRPLKLI 578 (579)
Q Consensus 565 ~He-d~GMm~~~~V~ 578 (579)
.|. ..|||+.++|.
T Consensus 282 ~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 282 IEAFEKGAAAQVKVE 296 (311)
T ss_pred HHHHhCCCEEEEEEC
Confidence 998 77999999873
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.47 E-value=1.5e-13 Score=152.28 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=82.3
Q ss_pred CcceeeecCCCCCCCCCcc--EEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCC-CC
Q 008071 84 PTPVYAYGTSKHTATVPGP--TIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPES-DG 160 (579)
Q Consensus 84 ~~~~w~y~~~~~ng~~PGP--tI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~-DG 160 (579)
...+|+|| |..+++ .|++++||+|+|+|.|.+.. ++.|||||....... ||
T Consensus 484 ~~~~wtiN-----G~~~~~~~pl~v~~Gervri~l~N~t~~---------------------~HpmHlHG~~f~v~~~~G 537 (587)
T TIGR01480 484 ERFAWSFD-----GEAFGLKTPLRFNYGERLRVVLVNDTMM---------------------AHPIHLHGMWSELEDGQG 537 (587)
T ss_pred ceeEEEEC-----CccCCCCCceEecCCCEEEEEEECCCCC---------------------CcceeEcCceeeeecCCC
Confidence 46679997 887774 79999999999999999887 899999999766543 55
Q ss_pred CCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 161 NANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 161 ~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.....-....|.||+++ +|+|.++ .+|+||||||.. .|...||++.+.|.
T Consensus 538 ~~~~~~dTv~V~Pg~t~---~~~f~ad-~pG~w~~HCH~l----~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 538 EFQVRKHTVDVPPGGKR---SFRVTAD-ALGRWAYHCHML----LHMEAGMFREVTVR 587 (587)
T ss_pred cccccCCceeeCCCCEE---EEEEECC-CCeEEEEcCCCH----HHHhCcCcEEEEeC
Confidence 32111112368999999 9999998 999999999985 68889999999873
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.05 E-value=1.5e-09 Score=96.58 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=71.7
Q ss_pred eeEEEeEEEEEE-Ee-cCCCCCccee-eecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKW-KF-HRDLPPTPVY-AYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKK 141 (579)
Q Consensus 65 ~~~~i~~~~~~~-~~-~~~~~~~~~w-~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~ 141 (579)
+++.|.+++.++ ++ -.+. .+..+ ++| +++..+.|+|++||+|+++|+|.-+..|
T Consensus 27 f~~~i~~~~~~~~~~~~~~~-~~~~i~a~n-----~~~~P~~I~VkaGD~Vtl~vtN~d~~~H----------------- 83 (135)
T TIGR03096 27 FTVVINAYDTTIPELNVEGV-TVKNIRAFN-----VLNEPEALVVKKGTPVKVTVENKSPISE----------------- 83 (135)
T ss_pred eEEEEeccccEeeEEEeCCE-EEEEEEeee-----eEEcCCEEEECCCCEEEEEEEeCCCCcc-----------------
Confidence 456677778888 77 4444 56677 886 9999999999999999999999765411
Q ss_pred CCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCC
Q 008071 142 GIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMG 201 (579)
Q Consensus 142 ~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g 201 (579)
..+++.||. +..++||++. +|+|+++ ++|+|||||-.|.
T Consensus 84 --~f~i~~~gi---------------s~~I~pGet~---TitF~ad-KpG~Y~y~C~~HP 122 (135)
T TIGR03096 84 --GFSIDAYGI---------------SEVIKAGETK---TISFKAD-KAGAFTIWCQLHP 122 (135)
T ss_pred --ceEECCCCc---------------ceEECCCCeE---EEEEECC-CCEEEEEeCCCCC
Confidence 234554432 1147899999 9999998 9999999999985
No 25
>PLN02604 oxidoreductase
Probab=98.67 E-value=2.7e-08 Score=111.09 Aligned_cols=98 Identities=21% Similarity=0.302 Sum_probs=71.9
Q ss_pred ceEEEcCeecCCCcccccCCCCeEEEEEEeCC-CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCccccccccccc
Q 008071 429 THLFINGKSYEEPVTETPKAGTSEVWNVINLT-EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYAR 507 (579)
Q Consensus 429 ~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~-~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 507 (579)
..|+|||+.- . ..+.++.|+++++.|.|.. ...|+||+||... .... | .|
T Consensus 44 ~~~~~Ng~~p-g-P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~~-------~-------~D----------- 94 (566)
T PLN02604 44 LVITINGRSP-G-PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGTP-------W-------FD----------- 94 (566)
T ss_pred eEEEECCccC-C-CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCCc-------c-------cc-----------
Confidence 4589999653 3 3567999999999999986 4689999999842 1110 0 01
Q ss_pred CcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 508 GKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 508 G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
|. .......|+||++.+. +|+ ++++| |.||||...|.+.||++.+.|-
T Consensus 95 G~---------~~~tq~~i~pg~s~~y--~f~------------~~~~Gt~wyH~H~~~q~~~Gl~G~liV~ 143 (566)
T PLN02604 95 GT---------EGVTQCPILPGETFTY--EFV------------VDRPGTYLYHAHYGMQREAGLYGSIRVS 143 (566)
T ss_pred CC---------CccccCccCCCCeEEE--EEE------------cCCCEEEEEeeCcHHHHhCCCeEEEEEE
Confidence 31 1124457899998766 665 24678 9999999999999999999874
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.53 E-value=1.4e-05 Score=89.07 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=129.1
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEE-ecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHV-AADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~vi-a~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|.++. +++++++.|--.. ...||. ||....-- ..||.+- +..-.|.||+.+...+++.
T Consensus 23 ~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~-~tsiHw-HGl~q~~~~~~DGv~~-----vTq~pI~PG~s~~Y~f~~~ 95 (539)
T TIGR03389 23 SILTVNGKFPGPTLYAREGDTVIVNVTNNVQY-NVTIHW-HGVRQLRNGWADGPAY-----ITQCPIQPGQSYVYNFTIT 95 (539)
T ss_pred EEEEECCcccCCEEEEEcCCEEEEEEEeCCCC-CeeEec-CCCCCCCCCCCCCCcc-----cccCCcCCCCeEEEEEEec
Confidence 589999996 69999988 9999999999875 467888 77432111 2577542 2334589999998888875
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS------ 423 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~------ 423 (579)
+..| +|+-.+...... .| -.-.+.|..... ...| + ...+.+..+.+.+...
T Consensus 96 ~~~G-T~WYHsH~~~~~-~G--------l~G~lIV~~~~~---~~~~-----~-----~~~d~e~~l~l~Dw~~~~~~~~ 152 (539)
T TIGR03389 96 GQRG-TLWWHAHISWLR-AT--------VYGAIVILPKPG---VPYP-----F-----PKPDREVPIILGEWWNADVEAV 152 (539)
T ss_pred CCCe-eEEEecCchhhh-cc--------ceEEEEEcCCCC---CCCC-----C-----CCCCceEEEEecccccCCHHHH
Confidence 3333 888776642110 11 111223332211 0111 0 0111222222222100
Q ss_pred -----CCC----CcceEEEcCeecC-------CCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHH
Q 008071 424 -----DID----EPTHLFINGKSYE-------EPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEE 486 (579)
Q Consensus 424 -----~~g----~~~~~~iNg~~~~-------~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~ 486 (579)
..+ .+..++|||+... ....+.++.|++.+|+|+|.+.. .+-|||+||.|.|++..
T Consensus 153 ~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~D------- 225 (539)
T TIGR03389 153 INQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVD------- 225 (539)
T ss_pred HHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeC-------
Confidence 001 1235889998642 12356789999999999999765 68999999999999873
Q ss_pred hhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 487 FKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 487 ~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|.. -+|...|++.|.+|+.+.|+++++
T Consensus 226 ---------------------G~~-----~~P~~~~~l~i~~GqRydVlv~a~ 252 (539)
T TIGR03389 226 ---------------------ATY-----TKPFKTKTIVIGPGQTTNVLLTAD 252 (539)
T ss_pred ---------------------Ccc-----cCceEeCeEEecCCCEEEEEEECC
Confidence 321 245578999999999999999886
No 27
>PLN02835 oxidoreductase
Probab=98.51 E-value=2.7e-05 Score=86.47 Aligned_cols=201 Identities=13% Similarity=0.216 Sum_probs=130.6
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEE-EecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIH-VAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~v-ia~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|.++. +++++++.|.-.. ...||. ||..+.- -..||.+. ..--|.||+.+.--++..
T Consensus 49 ~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~-~ttiHW-HGl~~~~~~~~DGv~~------tQ~pI~PG~sf~Y~F~~~ 120 (539)
T PLN02835 49 QVILINGQFPGPRLDVVTNDNIILNLINKLDQ-PFLLTW-NGIKQRKNSWQDGVLG------TNCPIPPNSNYTYKFQTK 120 (539)
T ss_pred EEEEECCcCCCCCEEEECCCEEEEEEEeCCCC-CCcEEe-CCcccCCCCCCCCCcc------CcCCCCCCCcEEEEEEEC
Confidence 589999996 69999988 9999999999864 467888 7844332 24698542 124689999888888764
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS------ 423 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~------ 423 (579)
+..| +|+-.+....++..|.. ++ +.|..... + ..| + ...+.+..+.+.+...
T Consensus 121 ~q~G-T~WYHsH~~~q~~~Gl~-----G~---lIV~~~~~-~--~~p-----~-----~~~d~e~~l~l~Dw~~~~~~~~ 178 (539)
T PLN02835 121 DQIG-TFTYFPSTLFHKAAGGF-----GA---INVYERPR-I--PIP-----F-----PLPDGDFTLLVGDWYKTSHKTL 178 (539)
T ss_pred CCCE-eEEEEeCccchhcCccc-----ce---eEEeCCCC-C--CcC-----C-----CCCCceEEEEeeccccCCHHHH
Confidence 3333 88887764333333311 12 22322110 0 011 1 0111222333322100
Q ss_pred -----C---CCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhhcc
Q 008071 424 -----D---IDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTKY 494 (579)
Q Consensus 424 -----~---~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~ 494 (579)
. ...+...+|||+.. ..+.++.|++.+|+|+|.+.. ..-|||.||.|.|++..
T Consensus 179 ~~~~~~g~~~~~~d~~liNG~~~---~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~D--------------- 240 (539)
T PLN02835 179 QQRLDSGKVLPFPDGVLINGQTQ---STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVE--------------- 240 (539)
T ss_pred HHHhhcCCCCCCCceEEEccccC---ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEEC---------------
Confidence 0 11234588999864 246789999999999999875 79999999999999973
Q ss_pred CCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 495 NDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 495 ~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|... ++.-.|++.+.+|+++.|+++.+
T Consensus 241 -------------G~~v-----~p~~~~~l~i~~GqRydvlv~~~ 267 (539)
T PLN02835 241 -------------GSHT-----IQNIYDSLDVHVGQSVAVLVTLN 267 (539)
T ss_pred -------------CccC-----CCceeeEEEECcCceEEEEEEcC
Confidence 3212 23357999999999999999886
No 28
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.51 E-value=1.2e-05 Score=89.69 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=126.9
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEE-EecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIH-VAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~v-ia~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|.++. +++++++.|........||. ||....- -..||.+- +..-.|.||+++...++++
T Consensus 21 ~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHw-HGl~~~~~~~~DG~~~-----vtq~~I~PG~s~~y~f~~~ 94 (541)
T TIGR03388 21 LVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHW-HGIRQIGTPWADGTAG-----VTQCAINPGETFIYNFVVD 94 (541)
T ss_pred eEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEe-cCcCCcCCcccCCCCc-----cccCCcCCCCEEEEEEEcC
Confidence 579999996 48999988 99999999997655678999 7853211 12577542 2345689999999999987
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS------ 423 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~------ 423 (579)
+.+ +|+...........|. .-.+.|..... +. .| + ..+.+..+.+.+...
T Consensus 95 ~~G--t~wyH~H~~~q~~~Gl--------~G~liV~~~~~-~~--~p-----~------~~d~e~~l~l~Dw~~~~~~~~ 150 (541)
T TIGR03388 95 RPG--TYFYHGHYGMQRSAGL--------YGSLIVDVPDG-EK--EP-----F------HYDGEFNLLLSDWWHKSIHEQ 150 (541)
T ss_pred CCE--EEEEEecchHHhhccc--------eEEEEEecCCC-CC--CC-----c------cccceEEEEeecccCCCHHHH
Confidence 753 8887765432222221 11223332210 00 00 0 001111122211100
Q ss_pred ----------CCCCcceEEEcCee-cC-----------------------CCcccccCCCCeEEEEEEeCCCC-Cceeee
Q 008071 424 ----------DIDEPTHLFINGKS-YE-----------------------EPVTETPKAGTSEVWNVINLTED-NHPLHI 468 (579)
Q Consensus 424 ----------~~g~~~~~~iNg~~-~~-----------------------~~~~~~~~~G~~~~w~l~N~~~~-~HP~Hl 468 (579)
..+.+...+|||+. +. .+..+.++.|++.+|+|+|.+.. .+-|+|
T Consensus 151 ~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i 230 (541)
T TIGR03388 151 EVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAI 230 (541)
T ss_pred HhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEE
Confidence 00112335777752 11 12235688999999999998754 899999
Q ss_pred eeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 469 HLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 469 Hg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
++|+|.|++.. |... +|...|.+.|.+|+.+.|+++.+
T Consensus 231 d~h~~~VIa~D----------------------------G~~v-----~P~~v~~l~i~~GqR~dvlv~~~ 268 (541)
T TIGR03388 231 EGHKLTVVEAD----------------------------GNYV-----EPFTVKDIDIYSGETYSVLLTTD 268 (541)
T ss_pred CCCEEEEEEeC----------------------------CEec-----ccceeCeEEecCCCEEEEEEeCC
Confidence 99999999973 3211 34567899999999999988875
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=98.46 E-value=2.7e-05 Score=86.66 Aligned_cols=204 Identities=14% Similarity=0.188 Sum_probs=131.6
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEE-EecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIH-VAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~v-ia~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|+++. +++++++.|.-.. ...||. ||....- -..||.+. ..-.|.||+.+.-.+++.
T Consensus 47 ~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~-~ttiHW-HGi~q~~~~~~DGv~~------TQcpI~PG~sf~Y~F~~~ 118 (552)
T PLN02354 47 QVILINGQFPGPNINSTSNNNIVINVFNNLDE-PFLLTW-SGIQQRKNSWQDGVPG------TNCPIPPGTNFTYHFQPK 118 (552)
T ss_pred EEEEECCCCcCCcEEEeCCCEEEEEEEECCCC-Cccccc-ccccCCCCcccCCCcC------CcCCCCCCCcEEEEEEeC
Confidence 589999995 59999988 9999999999864 467888 7744332 24788542 234789999998888875
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee-------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT------- 422 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~------- 422 (579)
+..| +|+-.+....++..|.. ++ +.|.+... ...| +. ..+.+..+.+.+..
T Consensus 119 ~q~G-T~WYHsH~~~Q~~~Gl~-----G~---lII~~~~~---~~~p-----~~-----~~d~e~~l~l~Dw~~~~~~~~ 176 (552)
T PLN02354 119 DQIG-SYFYYPSTGMHRAAGGF-----GG---LRVNSRLL---IPVP-----YA-----DPEDDYTVLIGDWYTKSHTAL 176 (552)
T ss_pred CCCc-ceEEecCccceecCCcc-----ce---EEEcCCcC---CCCC-----CC-----CcCceEEEEeeeeccCCHHHH
Confidence 3334 88887765433333311 12 22322210 0011 10 01112223332210
Q ss_pred -------cCCCCcceEEEcCeecC----CCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhh
Q 008071 423 -------SDIDEPTHLFINGKSYE----EPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKAC 490 (579)
Q Consensus 423 -------~~~g~~~~~~iNg~~~~----~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~ 490 (579)
...+.+...+|||+... ....+.++.|++.+|+|+|.+.. ..-|||.||.|.|++..
T Consensus 177 ~~~~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~D----------- 245 (552)
T PLN02354 177 KKFLDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEME----------- 245 (552)
T ss_pred HHHHhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeC-----------
Confidence 00123456899998532 23456799999999999999866 78999999999999973
Q ss_pred hhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 491 MTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 491 ~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|... ++...|++.|.+|+++.|+++.+
T Consensus 246 -----------------G~~v-----~p~~~~~l~i~~GqRydVlv~a~ 272 (552)
T PLN02354 246 -----------------GSHV-----LQNDYDSLDVHVGQCFSVLVTAN 272 (552)
T ss_pred -----------------Cccc-----CCcceeEEEEccCceEEEEEECC
Confidence 3211 23456999999999999999876
No 30
>PRK10965 multicopper oxidase; Provisional
Probab=98.45 E-value=7.3e-06 Score=90.65 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=63.8
Q ss_pred EEECCcccC----eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCc--cEEecEEEeCcceEEEEEEE
Q 008071 275 IIVNGKAWP----RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGR--PVVTNETLLAPSEIADVVID 347 (579)
Q Consensus 275 ~~VNG~~~P----~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~--p~~~~~l~l~pgeR~dvlv~ 347 (579)
++|||+.+. .++++. ++.+|+|+|.+....+.||| ||+.|+|++.||.+++. +-.+|++.+.| ++++|+|+
T Consensus 414 ~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~Hl-Hg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~ 491 (523)
T PRK10965 414 NKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHI-HGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVK 491 (523)
T ss_pred ccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEE-eCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEE
Confidence 489999874 366777 89999999999766799999 89999999999988742 34689999977 88999999
Q ss_pred cCCCC
Q 008071 348 FSESK 352 (579)
Q Consensus 348 ~~~~~ 352 (579)
|+..+
T Consensus 492 f~~~~ 496 (523)
T PRK10965 492 FDHDA 496 (523)
T ss_pred ecCCC
Confidence 98653
No 31
>PLN02792 oxidoreductase
Probab=98.43 E-value=4.5e-05 Score=84.54 Aligned_cols=204 Identities=14% Similarity=0.179 Sum_probs=129.5
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEE-ecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHV-AADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~vi-a~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|+++. +++++++.|--. ....||. ||....-- ..||.+. . +--|.||+.+.--++++
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~-~~ttiHW-HGl~q~~~~~~DGv~~-----t-qcPI~PG~sftY~F~~~ 107 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLD-EPFLLSW-NGVHMRKNSYQDGVYG-----T-TCPIPPGKNYTYDFQVK 107 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCC-CCcCEeC-CCcccCCCCccCCCCC-----C-cCccCCCCcEEEEEEeC
Confidence 589999995 59999988 999999999976 4467887 67433222 2799543 1 24689999888888875
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee-------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT------- 422 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~------- 422 (579)
+..| +|+-.+.....+..|. -+++ .+..... +....+. ...+..+.|.+..
T Consensus 108 ~q~G-T~WYHsH~~~q~~~Gl-----~G~l---iI~~~~~-~~~p~~~------------~d~e~~i~l~Dw~~~~~~~~ 165 (536)
T PLN02792 108 DQVG-SYFYFPSLAVQKAAGG-----YGSL---RIYSLPR-IPVPFPE------------PAGDFTFLIGDWYRRNHTTL 165 (536)
T ss_pred CCcc-ceEEecCcchhhhccc-----ccce---EEeCCcc-cCcCCCc------------ccceeEEEecccccCCHHHH
Confidence 3333 8887776433322221 1122 1221110 0000110 0111122221110
Q ss_pred -------cCCC-CcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhhc
Q 008071 423 -------SDID-EPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTK 493 (579)
Q Consensus 423 -------~~~g-~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~ 493 (579)
.... .+..++|||+.......+.++.|++.+|+|+|.+.. ..-|+|.||.|.|++..
T Consensus 166 ~~~~~~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~D-------------- 231 (536)
T PLN02792 166 KKILDGGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVE-------------- 231 (536)
T ss_pred HHHhhccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeC--------------
Confidence 0001 234689999864434457789999999999999876 68999999999999973
Q ss_pred cCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 494 YNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 494 ~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|... ++.-.|++.|.+|+++.|+++.+
T Consensus 232 --------------G~~v-----~p~~~~~l~i~~GqRydVlV~a~ 258 (536)
T PLN02792 232 --------------GTHT-----VQSMYTSLDIHVGQTYSVLVTMD 258 (536)
T ss_pred --------------CccC-----CCcceeEEEEccCceEEEEEEcC
Confidence 3211 23346999999999999999876
No 32
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.33 E-value=6.6e-07 Score=81.32 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC-CCCCCC-----------cc-
Q 008071 99 VPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE-SDGNAN-----------SW- 165 (579)
Q Consensus 99 ~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~-~DG~p~-----------~~- 165 (579)
.-.+.++++.|+.+++.+.|.... ++.+|+||....-. .++.+. +.
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~~~---------------------~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~ 89 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNGSM---------------------PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPG 89 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECTTS---------------------SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSS
T ss_pred CCcceEEEeCCCEEEEEEECCCCC---------------------ccceEEEeeEEEeeecCCcccccccccccccccCc
Confidence 347899999999999999997766 89999999875311 112111 00
Q ss_pred -ccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 166 -FTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 166 -~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
--...+.||+.. +.+|.++ .+|.|.||||.. .+..+||++.+.|.
T Consensus 90 ~~DTv~v~~~~~~---~i~~~~~-~~G~w~~HCHi~----~H~~~GM~~~~~v~ 135 (138)
T PF07731_consen 90 WRDTVLVPPGGWV---VIRFRAD-NPGPWLFHCHIL----EHEDNGMMAVFVVG 135 (138)
T ss_dssp EESEEEEETTEEE---EEEEEET-STEEEEEEESSH----HHHHTT-EEEEEEC
T ss_pred ccccccccceeEE---EEEEEee-cceEEEEEEchH----HHHhCCCeEEEEEc
Confidence 001136678777 8999998 999999999995 57889999999997
No 33
>PLN02168 copper ion binding / pectinesterase
Probab=98.31 E-value=8.3e-05 Score=82.56 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=128.2
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEe---cCCCccCccEEecEEEeCcceEEEEEEE
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVA---ADSAYLGRPVVTNETLLAPSEIADVVID 347 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via---~DG~~l~~p~~~~~l~l~pgeR~dvlv~ 347 (579)
..++|||+. .|.|+++. +++++++.|.-.. ...||. ||. .+.. .||.+. .+-.|.||+++.--++
T Consensus 46 ~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHW-HGl--~~~~~~~~DGv~g------tQcpI~PG~sftY~F~ 115 (545)
T PLN02168 46 QVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTW-NGL--QLRKNSWQDGVRG------TNCPILPGTNWTYRFQ 115 (545)
T ss_pred EEEEECCcCCCCcEEEECCCEEEEEEEeCCCC-CccEee-CCc--cCCCCCCcCCCCC------CcCCCCCCCcEEEEEE
Confidence 578999995 48999988 9999999999874 467888 783 3433 498542 1246899999999888
Q ss_pred cCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee-----
Q 008071 348 FSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT----- 422 (579)
Q Consensus 348 ~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~----- 422 (579)
+++..| +|+-.+....++..|.. ++ +.|.+... + ..| ++ ....+..+.|.+..
T Consensus 116 ~~~q~G-T~WYHsH~~~Q~~~GL~-----G~---lII~~~~~-~--~~p-----~~-----~~d~e~~l~l~Dw~~~~~~ 173 (545)
T PLN02168 116 VKDQIG-SYFYFPSLLLQKAAGGY-----GA---IRIYNPEL-V--PVP-----FP-----KPDEEYDILIGDWFYADHT 173 (545)
T ss_pred eCCCCc-eEEEecChhhhhhCcce-----eE---EEEcCCcc-c--CcC-----cC-----cccceeeEEEEecCCCCHH
Confidence 853333 88887764333332311 11 22322211 0 011 00 00011112221110
Q ss_pred -------cC--CCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhh
Q 008071 423 -------SD--IDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMT 492 (579)
Q Consensus 423 -------~~--~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~ 492 (579)
.. ...+..++|||+.-.. ..+.++.|++.+|+|+|.+.. .+-|+|.||+|+|++..
T Consensus 174 ~~~~~~~~g~~~~~~d~~liNG~~~~~-~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~D------------- 239 (545)
T PLN02168 174 VMRASLDNGHSLPNPDGILFNGRGPEE-TFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETE------------- 239 (545)
T ss_pred HHHhhhhcCCCCCCCCEEEEeccCCCc-ceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEEC-------------
Confidence 00 0123457899985322 256789999999999998766 69999999999999873
Q ss_pred ccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 493 KYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 493 ~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|... ++.-.|++.|.+|+++.|+++.+
T Consensus 240 ---------------G~~v-----~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 240 ---------------GTYV-----QKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred ---------------CeEC-----CCceeeEEEEcCCceEEEEEEcC
Confidence 3211 23446999999999999999886
No 34
>PLN02991 oxidoreductase
Probab=98.28 E-value=0.00013 Score=80.91 Aligned_cols=202 Identities=14% Similarity=0.209 Sum_probs=129.5
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEE-EEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFI-HVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~-via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|+++. +++++++.|.-. ....||- ||.... --..||.+. . +--|.||+.+.--+++.
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~-~~ttiHW-HGi~q~~~~~~DGv~~-----t-QcpI~PG~sftY~F~~~ 119 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLD-EPFLISW-SGIRNWRNSYQDGVYG-----T-TCPIPPGKNYTYALQVK 119 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCC-CCccEEE-CCcccCCCccccCCCC-----C-CCccCCCCcEEEEEEeC
Confidence 589999995 59999988 999999999986 4567888 785432 234799542 1 34689999888888885
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee-------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT------- 422 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~------- 422 (579)
+..| +|+-.+.....+..|- .-.+.|.+... ...| +. ..+.+..+.|.+.-
T Consensus 120 ~q~G-T~WYHsH~~~q~~~Gl--------~G~lIV~~~~~---~~~p-----~~-----~~d~d~~i~l~DW~~~~~~~~ 177 (543)
T PLN02991 120 DQIG-SFYYFPSLGFHKAAGG--------FGAIRISSRPL---IPVP-----FP-----APADDYTVLIGDWYKTNHKDL 177 (543)
T ss_pred CCCc-ceEEecCcchhhhCCC--------eeeEEEeCCcc---cCcc-----cc-----cccceeEEEecceecCCHHHH
Confidence 3333 8888776432222221 11122332210 0111 00 01111222221110
Q ss_pred ----cC---CCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhhcc
Q 008071 423 ----SD---IDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTKY 494 (579)
Q Consensus 423 ----~~---~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~ 494 (579)
.. ...+...+|||+.. ...+.++.|++.+|+|+|.+.. .+-|+|.||.|+|++..
T Consensus 178 ~~~~~~~~~~~~~d~~liNG~~~--~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~D--------------- 240 (543)
T PLN02991 178 RAQLDNGGKLPLPDGILINGRGS--GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVE--------------- 240 (543)
T ss_pred HHHhhcCCCCCCCCEEEEccCCC--CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeC---------------
Confidence 00 01234578999853 2346789999999999998876 68999999999999873
Q ss_pred CCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 495 NDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 495 ~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|.. -++.-.|++.+.+|+++.|+++.+
T Consensus 241 -------------G~~-----~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 241 -------------GTH-----TIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred -------------Ccc-----ccceeeeEEEEcCCcEEEEEEECC
Confidence 321 134567999999999999999876
No 35
>PRK02710 plastocyanin; Provisional
Probab=98.26 E-value=1.6e-05 Score=70.49 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=52.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|++++||+| +|+|.-.. ++++.+.|.. +.. .+...+.||+++
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~---------------------~H~v~~~~~~------~~~---~~~~~~~pg~t~--- 90 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLA---------------------PHNAVFDGAK------ELS---HKDLAFAPGESW--- 90 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCC---------------------CceEEecCCc------ccc---ccccccCCCCEE---
Confidence 478999999984 56786444 6777766431 111 111236899988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.|.. +|+|-|+|=.| ..+||.|.|+|+
T Consensus 91 ~~tF~~---~G~y~y~C~~H------~~~gM~G~I~V~ 119 (119)
T PRK02710 91 EETFSE---AGTYTYYCEPH------RGAGMVGKITVE 119 (119)
T ss_pred EEEecC---CEEEEEEcCCC------ccCCcEEEEEEC
Confidence 887764 79999999855 348999999984
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.24 E-value=0.00016 Score=80.65 Aligned_cols=203 Identities=16% Similarity=0.213 Sum_probs=127.9
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEE-EEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFI-HVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~-via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|+++. +++++++.|.-......||. ||..+. --..||.+. +..-.|.||+.+.-.+++.
T Consensus 28 ~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHw-HGi~~~~~~~~DGvp~-----vTQcpI~PG~sf~Y~f~~~ 101 (538)
T TIGR03390 28 YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHW-HGLTQRTAPFSDGTPL-----ASQWPIPPGHFFDYEIKPE 101 (538)
T ss_pred EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEEC-CCCCCCCCCCCCCCcc-----cccCCCCCCCcEEEEEEec
Confidence 589999996 59999988 99999999986544567888 785432 223688765 1223478999887777764
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS------ 423 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~------ 423 (579)
....++|+-......++. | .-++ +.|..... . | + ..+++..+.|.+...
T Consensus 102 ~~q~GT~WYHsH~~~Q~~-~-----l~G~---lIV~~~~~-~----~-----~------~~d~e~~l~l~Dw~~~~~~~~ 156 (538)
T TIGR03390 102 PGDAGSYFYHSHVGFQAV-T-----AFGP---LIVEDCEP-P----P-----Y------KYDDERILLVSDFFSATDEEI 156 (538)
T ss_pred CCCCeeeEEecCCchhhh-c-----ceeE---EEEccCCc-c----C-----C------CccCcEEEEEeCCCCCCHHHH
Confidence 221228887766432211 1 1111 22322210 0 0 0 001112222211100
Q ss_pred ---------C-CCCcceEEEcCeecCC-------------CcccccCCCCeEEEEEEeCCCC-Cceeeeeecc-EEEEeE
Q 008071 424 ---------D-IDEPTHLFINGKSYEE-------------PVTETPKAGTSEVWNVINLTED-NHPLHIHLGL-FVVLDQ 478 (579)
Q Consensus 424 ---------~-~g~~~~~~iNg~~~~~-------------~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~-Fqvl~~ 478 (579)
. .+.+...+|||+.... ...+.++.|++.+|+|+|.+.. ..-|+|.+|. |+|++.
T Consensus 157 ~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~ 236 (538)
T TIGR03390 157 EQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEA 236 (538)
T ss_pred HhhhhccCCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEe
Confidence 0 0122347899984321 2346789999999999999876 6899999999 999997
Q ss_pred echhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 479 RELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
. |. +.+|...|++.|.+|+.+.|+++.+
T Consensus 237 D----------------------------G~-----~~~P~~v~~l~l~~GqRydVlv~~~ 264 (538)
T TIGR03390 237 D----------------------------GS-----YTKPAKIDHLQLGGGQRYSVLFKAK 264 (538)
T ss_pred C----------------------------CC-----CCCceEeCeEEEccCCEEEEEEECC
Confidence 3 42 1245678999999999999999987
No 37
>PLN02191 L-ascorbate oxidase
Probab=98.20 E-value=0.00013 Score=81.90 Aligned_cols=205 Identities=15% Similarity=0.140 Sum_probs=125.4
Q ss_pred CcEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEE-EecCCCccCccEEecEEEeCcceEEEEEEEc
Q 008071 272 GDAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIH-VAADSAYLGRPVVTNETLLAPSEIADVVIDF 348 (579)
Q Consensus 272 gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~v-ia~DG~~l~~p~~~~~l~l~pgeR~dvlv~~ 348 (579)
...++|||+. .|.|.++. +++++++.|.-......||. ||....- -..||.+- +..-.|.||+.+...+++
T Consensus 42 ~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHw-HGl~~~~~~~~DGv~g-----vtq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 42 GAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHW-HGIRQKGSPWADGAAG-----VTQCAINPGETFTYKFTV 115 (574)
T ss_pred eeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEC-CCCCCCCCccccCCCc-----cccCCcCCCCeEEEEEEC
Confidence 3689999996 59999988 99999999996655678998 7854321 12577543 223458999999999998
Q ss_pred CCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee------
Q 008071 349 SESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT------ 422 (579)
Q Consensus 349 ~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~------ 422 (579)
++.+ +|+.......++..|.. ++ +.|.....+. .|. . .+.+..+.+.+..
T Consensus 116 ~~~G--T~wYHsH~~~q~~~Gl~-----G~---liV~~~~~~~---~~~---~--------~d~e~~l~l~Dw~~~~~~~ 171 (574)
T PLN02191 116 EKPG--THFYHGHYGMQRSAGLY-----GS---LIVDVAKGPK---ERL---R--------YDGEFNLLLSDWWHESIPS 171 (574)
T ss_pred CCCe--EEEEeeCcHHHHhCCCE-----EE---EEEccCCCCC---CCC---C--------CCeeEEEeeeccccCChHH
Confidence 7754 88877764332222211 11 2222111000 000 0 0000011110000
Q ss_pred ----------cCCCCcceEEEcCee-c------------------------CCCcccccCCCCeEEEEEEeCCCC-Ccee
Q 008071 423 ----------SDIDEPTHLFINGKS-Y------------------------EEPVTETPKAGTSEVWNVINLTED-NHPL 466 (579)
Q Consensus 423 ----------~~~g~~~~~~iNg~~-~------------------------~~~~~~~~~~G~~~~w~l~N~~~~-~HP~ 466 (579)
.....+...+|||+. + ..+..+.++.|++.+|+|+|.+.. .+-|
T Consensus 172 ~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~ 251 (574)
T PLN02191 172 QELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNL 251 (574)
T ss_pred HHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEE
Confidence 000011123444431 0 012246789999999999998765 8999
Q ss_pred eeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 467 HIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 467 HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
+|.||+|.|++.. |.. -+|...|.+.|.+|+++.|+++.+
T Consensus 252 ~idgH~~tVIa~D----------------------------G~~-----v~P~~v~~l~i~~GqRydVlV~a~ 291 (574)
T PLN02191 252 AVQGHKLVVVEAD----------------------------GNY-----ITPFTTDDIDIYSGESYSVLLTTD 291 (574)
T ss_pred EECCCeEEEEEcC----------------------------Cee-----ccceEeeeEEEcCCCeEEEEEECC
Confidence 9999999999873 321 245578999999999999999886
No 38
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.17 E-value=2.2e-06 Score=75.78 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=68.0
Q ss_pred ceEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccC
Q 008071 429 THLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARG 508 (579)
Q Consensus 429 ~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G 508 (579)
..|++||. +..| ++.++.|+.++..|.|.....+.||+||...- . ..+ .| |
T Consensus 15 ~~~~~ng~-~pGP-tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~---~------~~~-------~D-----------G 65 (117)
T PF07732_consen 15 KVWTYNGQ-FPGP-TIRVREGDTVRITVTNNLDEPTSIHWHGLHQP---P------SPW-------MD-----------G 65 (117)
T ss_dssp EEEEETTB-SSEE-EEEEETTEEEEEEEEEESSSGBSEEEETSBST---T------GGG-------GS-----------G
T ss_pred EEEEECCC-CCCC-EEEEEcCCeeEEEEEeccccccccccceeeee---e------eee-------cC-----------C
Confidence 35889996 3333 67899999999999999888999999995430 0 000 11 2
Q ss_pred cccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 509 KKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 509 ~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.+. .- .-.+.||++.+. +|... ..+| |.||||...|...||...|.|-
T Consensus 66 ~~~--------~~-~~~i~pG~~~~Y--~~~~~-----------~~~Gt~wYH~H~~~~~~~GL~G~~iV~ 114 (117)
T PF07732_consen 66 VPG--------VT-QCPIAPGESFTY--EFTAN-----------QQAGTYWYHSHVHGQQVMGLYGAIIVE 114 (117)
T ss_dssp GTT--------TS-GSSBSTTEEEEE--EEEES-----------SCSEEEEEEECSTTHHHTTEEEEEEEE
T ss_pred ccc--------cc-ceeEEeecceee--eEeee-----------ccccceeEeeCCCchhcCcCEEEEEEc
Confidence 100 00 124778887655 55521 1267 9999999999889999998874
No 39
>PRK10883 FtsI repressor; Provisional
Probab=98.16 E-value=0.00014 Score=79.75 Aligned_cols=200 Identities=13% Similarity=0.131 Sum_probs=119.1
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSE 350 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~ 350 (579)
..+.+||+. .|+|.++. +++++++.|.-.. ...+|. ||....- ..||+.. . .|.||+++...+...+
T Consensus 66 ~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~-~ttiHw-HGl~~~~-~~~~g~~-~-------~I~PG~~~~y~f~~~~ 134 (471)
T PRK10883 66 SVWGINGRYLGPTIRVWKGDDVKLIYSNRLTE-PVSMTV-SGLQVPG-PLMGGPA-R-------MMSPNADWAPVLPIRQ 134 (471)
T ss_pred eEEEECCcccCCeEEEECCCEEEEEEEeCCCC-CCceeE-CCccCCC-CCCCCcc-c-------cCCCCCeEEEEEecCC
Confidence 578999985 48999988 9999999999864 357888 7753221 1255432 2 3889999988887776
Q ss_pred CCCcEEEEecCCCC----CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee----
Q 008071 351 SKSDVAILANDAPY----PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT---- 422 (579)
Q Consensus 351 ~~g~~~~l~~~~~~----~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~---- 422 (579)
.+| +||....... +...| -.-.+.|..... ....+|... . ..+..+.+....
T Consensus 135 ~aG-T~WYH~H~~~~t~~qv~~G--------L~G~lII~d~~~-~~~~~p~~~---~-------~~d~~l~l~D~~~~~~ 194 (471)
T PRK10883 135 NAA-TCWYHANTPNRMAQHVYNG--------LAGMWLVEDEVS-KSLPIPNHY---G-------VDDFPVIIQDKRLDNF 194 (471)
T ss_pred Cce-eeEEccCCCCchhhhHhcC--------CeEEEEEeCCcc-cccCCcccC---C-------CcceeEEeeeeeeccC
Confidence 544 8888765321 11111 111122332211 111122100 0 001111111000
Q ss_pred -------cC-CC-CcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC-Cceeee-eeccEEEEeEechhhhHHhhhhh
Q 008071 423 -------SD-ID-EPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED-NHPLHI-HLGLFVVLDQRELVKLEEFKACM 491 (579)
Q Consensus 423 -------~~-~g-~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~-~HP~Hl-Hg~~Fqvl~~~~~~~~~~~~~~~ 491 (579)
.. .+ .+..++|||+.+. .+.++.+ +++|.|+|.+.. ..-|++ +++.|+|++..
T Consensus 195 g~~~~~~~~~~g~~gd~~lvNG~~~p---~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~D------------ 258 (471)
T PRK10883 195 GTPEYNEPGSGGFVGDTLLVNGVQSP---YVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGD------------ 258 (471)
T ss_pred CCccccccccCCccCCeeEECCccCC---eEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeC------------
Confidence 00 01 1235789998653 2445554 689999999875 567787 78999999974
Q ss_pred hccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 492 TKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 492 ~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|.. ..+|.-.|.+.+.||+.+.|+++|.
T Consensus 259 ----------------Gg~----~~~P~~~~~l~l~pGeR~dvlVd~~ 286 (471)
T PRK10883 259 ----------------QGF----LPAPVSVKQLSLAPGERREILVDMS 286 (471)
T ss_pred ----------------CCc----ccCCcEeCeEEECCCCeEEEEEECC
Confidence 211 1234456899999999999999986
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.05 E-value=2.3e-05 Score=67.17 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=53.7
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC-CCCCCCccccccccCCCCccee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE-SDGNANSWFTAGFKEKGPTWTK 179 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~-~DG~p~~~~t~~~i~PG~~~~~ 179 (579)
-..|++++||+| +|+|.-.. ++++.++....+.. .+..+.-.-....+.||+++
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~---------------------~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~-- 70 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGG---------------------PHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESY-- 70 (99)
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------CceEEECCCCCccchhhhcccccccccccCCCCEE--
Confidence 568999999985 56676433 67777765432221 00111100011236899988
Q ss_pred eeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 180 KTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 180 ~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.|.. +|+|+|||-.| ..+||.|.|+|+
T Consensus 71 -~~tF~~---~G~y~y~C~~H------~~aGM~G~I~V~ 99 (99)
T TIGR02656 71 -EVTFST---PGTYTFYCEPH------RGAGMVGKITVE 99 (99)
T ss_pred -EEEeCC---CEEEEEEcCCc------cccCCEEEEEEC
Confidence 887764 89999999854 458999999985
No 41
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.99 E-value=3.8e-05 Score=71.69 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=75.8
Q ss_pred ceEEEcCeecC----------CCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhhccCCc
Q 008071 429 THLFINGKSYE----------EPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDA 497 (579)
Q Consensus 429 ~~~~iNg~~~~----------~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~ 497 (579)
...+|||+... ....+.++.|++++|.|+|.+.. .+.|++.||.|+|++..
T Consensus 37 d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~D------------------ 98 (159)
T PF00394_consen 37 DSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAAD------------------ 98 (159)
T ss_dssp SEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEET------------------
T ss_pred cEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeec------------------
Confidence 45789986432 23456789999999999998765 89999999999999973
Q ss_pred ccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEee----ccccccccCcc
Q 008071 498 IKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHC----HVLDHEDNVMM 572 (579)
Q Consensus 498 ~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HC----Hil~Hed~GMm 572 (579)
|... +|...|++.+.+|+.+.|+++++. .+| |.++| +...+...++.
T Consensus 99 ----------G~~v-----~p~~~~~l~l~~G~R~dvlv~~~~-------------~~g~y~i~~~~~~~~~~~~~~~~~ 150 (159)
T PF00394_consen 99 ----------GVPV-----EPYKVDTLVLAPGQRYDVLVTADQ-------------PPGNYWIRASYQHDSINDPQNGNA 150 (159)
T ss_dssp ----------TEEE-----EEEEESBEEE-TTEEEEEEEEECS-------------CSSEEEEEEEESSSSSHSHGGGTT
T ss_pred ----------cccc-----cccccceEEeeCCeEEEEEEEeCC-------------CCCeEEEEEecccCCCccCCCcEE
Confidence 4212 256889999999999999999871 357 99999 44556666655
Q ss_pred ccE
Q 008071 573 RPL 575 (579)
Q Consensus 573 ~~~ 575 (579)
.-+
T Consensus 151 ~ai 153 (159)
T PF00394_consen 151 LAI 153 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 42
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.98 E-value=0.00019 Score=78.46 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=68.5
Q ss_pred CCCcEEEECCcccCe----EEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccC-ccEEecEEEeCcceEEE
Q 008071 270 YFGDAIIVNGKAWPR----MTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLG-RPVVTNETLLAPSEIAD 343 (579)
Q Consensus 270 ~~gd~~~VNG~~~P~----~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~-~p~~~~~l~l~pgeR~d 343 (579)
..+..+.+||+.++. +.++. +++||+|.|-+. -.+.||+ ||+.|.|+..|..... .+...|++.+.|++|..
T Consensus 340 ~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~Hl-Hg~~F~v~~~~~~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 340 IGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHL-HGHFFQVLSGDAPAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred cccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEE-cCceEEEEecCCCcccccCccceEEEeCCCeEEE
Confidence 345679999998872 45666 899999999998 6699999 8999999999922222 34678999999999999
Q ss_pred EEEEcCCCCCcEEEEe
Q 008071 344 VVIDFSESKSDVAILA 359 (579)
Q Consensus 344 vlv~~~~~~g~~~~l~ 359 (579)
|.++++.++ .+.+.
T Consensus 418 v~~~a~~~g--~~~~H 431 (451)
T COG2132 418 VRFDADYPG--PWMFH 431 (451)
T ss_pred EEEeCCCCC--ceEEe
Confidence 999988875 55543
No 43
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.86 E-value=0.0025 Score=71.38 Aligned_cols=205 Identities=13% Similarity=0.146 Sum_probs=128.9
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEE-EecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIH-VAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~v-ia~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..++|||+. .|.|+++. +++++++.|--.. ...||. ||..+.- -..||... ..--|.||+.+.--++++
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~-~ttIHW-HGl~q~~t~w~DGv~~------TQcPI~PG~sftY~F~~~ 120 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALDE-PLLLTW-HGVQQRKSAWQDGVGG------TNCAIPAGWNWTYQFQVK 120 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCCC-CccEEE-CCccCCCCccccCCCC------CcCCcCCCCcEEEEEEeC
Confidence 478999995 59999988 9999999999864 578898 8854433 24798532 235789999998888886
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee-------
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT------- 422 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~------- 422 (579)
+..| +|+-.+....++..|. -++ +.|.+... ...| ++.. ...+..+.|.+..
T Consensus 121 dq~G-T~WYHsH~~~Q~~~Gl-----~Ga---lII~~~~~---~~~P-----~~~~----~~~e~~i~l~DW~~~~~~~~ 179 (596)
T PLN00044 121 DQVG-SFFYAPSTALHRAAGG-----YGA---ITINNRDV---IPIP-----FGFP----DGGDITLFIADWYARDHRAL 179 (596)
T ss_pred CCCc-eeEeeccchhhhhCcC-----eeE---EEEcCccc---cccc-----ccCC----cccceEEEecccccCCHHHH
Confidence 3334 8887765433322221 112 22332210 0011 1000 0011122222110
Q ss_pred ----c---CCCCcceEEEcCeec---CC--------CcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhh
Q 008071 423 ----S---DIDEPTHLFINGKSY---EE--------PVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVK 483 (579)
Q Consensus 423 ----~---~~g~~~~~~iNg~~~---~~--------~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~ 483 (579)
. ..+.+...+|||+.- .. ...+.++.|++.+|+|+|.+.. .--|+|-||+|.|++.+
T Consensus 180 ~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~D---- 255 (596)
T PLN00044 180 RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAE---- 255 (596)
T ss_pred HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeC----
Confidence 0 011233456888632 11 1246789999999999998765 67899999999999973
Q ss_pred hHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 484 LEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 484 ~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|. +-+|...|.+.|.+|+++.|+++.+
T Consensus 256 ------------------------G~-----~v~P~~vd~i~I~~GQRydVLV~a~ 282 (596)
T PLN00044 256 ------------------------GS-----YTSQQNYTNLDIHVGQSYSFLLTMD 282 (596)
T ss_pred ------------------------Cc-----ccCceeeeeEEEcCCceEEEEEECC
Confidence 32 1235567999999999999999887
No 44
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.60 E-value=0.00045 Score=57.05 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=49.9
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|++++||+| +|+|.-.. +++++++...... .+ +....+.||++|
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~---------------------~Hnv~~~~g~~~~-~~------~~~~~~~~g~~~--- 56 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAM---------------------PHNVHFVAGVLGE-AA------LKGPMMKKEQAY--- 56 (83)
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------CccEEecCCCCcc-cc------ccccccCCCCEE---
Confidence 568999999996 56787444 6888876543111 00 111124567755
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++ +.+ .+|+|-|||-.|. .|.|.++|+
T Consensus 57 ~~--tf~-~~G~y~y~C~~Hp--------~M~G~v~V~ 83 (83)
T TIGR02657 57 SL--TFT-EAGTYDYHCTPHP--------FMRGKVVVE 83 (83)
T ss_pred EE--ECC-CCEEEEEEcCCCC--------CCeEEEEEC
Confidence 54 445 7899999999984 599999985
No 45
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.52 E-value=0.00014 Score=62.80 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=44.3
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeee
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKT 181 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~ 181 (579)
.+|++++|++++|+|+|.-.. ++.+...++. +. ..+.||++. +
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~---------------------~h~~~i~~~~------------~~-~~l~~g~~~---~ 77 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSR---------------------PHEFVIPDLG------------IS-KVLPPGETA---T 77 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS----------------------EEEEEGGGT------------EE-EEE-TT-EE---E
T ss_pred CEEEEcCCCeEEEEEEECCCC---------------------cEEEEECCCc------------eE-EEECCCCEE---E
Confidence 389999999999999998655 5666665522 22 147899998 9
Q ss_pred EEEeCCCCCceeeeecCCCChhhhhhcccceEEEEE
Q 008071 182 YHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIV 217 (579)
Q Consensus 182 y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV 217 (579)
+.|+.. .+|+|-|||-.|+ . |.|-|||
T Consensus 78 ~~f~~~-~~G~y~~~C~~~~-------~-m~G~liV 104 (104)
T PF13473_consen 78 VTFTPL-KPGEYEFYCTMHP-------N-MKGTLIV 104 (104)
T ss_dssp EEEEE--S-EEEEEB-SSS--------T-TB-----
T ss_pred EEEcCC-CCEEEEEEcCCCC-------c-ceecccC
Confidence 999876 9999999999874 3 6777765
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.49 E-value=0.0002 Score=61.34 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=30.3
Q ss_pred ccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.+.||+++ ++.|+ .+|+|.|+|-.| ..+||.|.|+|+
T Consensus 63 ~~~~G~~~---~~tF~---~~G~y~y~C~PH------~~~GM~G~i~V~ 99 (99)
T PF00127_consen 63 LLAPGETY---SVTFT---KPGTYEYYCTPH------YEAGMVGTIIVE 99 (99)
T ss_dssp EBSTTEEE---EEEEE---SSEEEEEEETTT------GGTTSEEEEEEE
T ss_pred ecCCCCEE---EEEeC---CCeEEEEEcCCC------cccCCEEEEEEC
Confidence 36789988 88887 689999999753 237999999996
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.42 E-value=0.00038 Score=64.03 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=27.8
Q ss_pred eEEEcCeecCCCcccccCCCCeEEEEEEeCCC-CCceeeeee
Q 008071 430 HLFINGKSYEEPVTETPKAGTSEVWNVINLTE-DNHPLHIHL 470 (579)
Q Consensus 430 ~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~-~~HP~HlHg 470 (579)
.|.++|.. ...+.++.|+.+++.+.|... ..|.|-||.
T Consensus 43 ~f~~~~~~---~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~ 81 (148)
T TIGR03095 43 SFEIHDLK---NPTIVIPEGVTVHFTVINTDTDSGHNFDISK 81 (148)
T ss_pred eEEecCCC---CCEEEEcCCCEEEEEEEeCCCCccccEEeec
Confidence 46677643 245689999999999999865 567766663
No 48
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.36 E-value=0.00055 Score=58.59 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=58.0
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG 519 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~ 519 (579)
.|..+.++.|++++|. |.+...|-+.++...+..-... . ....
T Consensus 15 ~P~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~~----------------------------~-------~~~~ 57 (99)
T TIGR02656 15 EPAKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVKE----------------------------L-------AKSL 57 (99)
T ss_pred eCCEEEECCCCEEEEE--ECCCCCceEEECCCCCccchhh----------------------------h-------cccc
Confidence 4677789999999887 7666788887654322111000 0 0012
Q ss_pred ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 520 WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 520 ~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
..+.+.+.||++.++ .|. .+| |.|||- -|...||...+.|
T Consensus 58 ~~~~~~~~pG~t~~~--tF~--------------~~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 58 SHKDLLNSPGESYEV--TFS--------------TPGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred cccccccCCCCEEEE--EeC--------------CCEEEEEEcC--CccccCCEEEEEE
Confidence 347788899998766 776 367 999998 8999999999987
No 49
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.21 E-value=0.0023 Score=56.24 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=49.1
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEee-CCCCCCCCCCCCCCccccccccCCCCccee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHL-HGGIDEPESDGNANSWFTAGFKEKGPTWTK 179 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~-HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~ 179 (579)
-..|+|++||+|+..+.|. ++++.+ .+. .+ +|... +.. .+|+++
T Consensus 14 P~~v~V~~GdTV~f~n~d~------------------------~Hnv~~~~~~-~p---~g~~~--~~s---~~g~~~-- 58 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK------------------------GHNVETIKGM-IP---EGAEA--FKS---KINEEY-- 58 (116)
T ss_pred CCEEEECCCCEEEEEECCC------------------------CeeEEEccCC-Cc---CCccc--ccC---CCCCEE--
Confidence 5679999999977766653 344443 221 11 22211 221 346555
Q ss_pred eeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 180 KTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 180 ~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
++.| + .+|+|-|+|-.| ..+||.|.|+|.+|.
T Consensus 59 -~~tF--~-~~G~Y~Y~C~pH------~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 59 -TVTV--T-EEGVYGVKCTPH------YGMGMVALIQVGDPP 90 (116)
T ss_pred -EEEe--C-CCEEEEEEcCCC------ccCCCEEEEEECCCC
Confidence 5555 4 789999999976 358999999999753
No 50
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.19 E-value=0.0019 Score=57.51 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=55.3
Q ss_pred ceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcc
Q 008071 86 PVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSW 165 (579)
Q Consensus 86 ~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~ 165 (579)
..+.|+ --+|+|++||+ |+|.|.-.. .+|++.=+...+ +|.-.
T Consensus 47 ~~~vF~---------PA~v~v~pGDT--Vtw~~~d~~---------------------~Hnv~~~~~~~~---~g~~~-- 89 (128)
T COG3794 47 GAMVFE---------PAEVTVKPGDT--VTWVNTDSV---------------------GHNVTAVGGMDP---EGSGT-- 89 (128)
T ss_pred cceeEc---------CcEEEECCCCE--EEEEECCCC---------------------CceEEEeCCCCc---ccccc--
Confidence 456676 34799999999 567776554 477766655422 23322
Q ss_pred ccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 166 FTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 166 ~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
+. ..+|++| ++.|. .+|+|-|+|-.| ..+||.|.|+|++
T Consensus 90 ~~---~~~~~s~---~~Tfe---~~G~Y~Y~C~PH------~~~gM~G~IvV~~ 128 (128)
T COG3794 90 LK---AGINESF---THTFE---TPGEYTYYCTPH------PGMGMKGKIVVGE 128 (128)
T ss_pred cc---cCCCcce---EEEec---ccceEEEEeccC------CCCCcEEEEEeCC
Confidence 21 2345766 66664 489999999886 4589999999973
No 51
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.19 E-value=0.0014 Score=72.62 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=57.8
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeee
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKT 181 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~ 181 (579)
..|+|++||+|+++++|.-... =. .||..++.. +.- + .+.||++- +
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~---------------------DV--iHGF~Ip~~--nI~---~---dv~PG~t~---s 600 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVE---------------------DL--THGFAIPNY--GVN---M---EVAPQATA---S 600 (635)
T ss_pred ceEEecCCCEEEEEEEeCCccc---------------------cc--ccceeeccc--Ccc---E---EEcCCceE---E
Confidence 3699999999999999953311 11 166666543 111 1 26799888 9
Q ss_pred EEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 182 YHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 182 y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
..|+++ .+|+|||||..... ..| .+|.|.++|+
T Consensus 601 vtF~ad-kPGvy~~~CtefCG-a~H--~~M~G~~iVe 633 (635)
T PRK02888 601 VTFTAD-KPGVYWYYCTWFCH-ALH--MEMRGRMLVE 633 (635)
T ss_pred EEEEcC-CCEEEEEECCcccc-cCc--ccceEEEEEE
Confidence 999998 99999999998543 245 5999999998
No 52
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.11 E-value=0.0066 Score=53.26 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=48.1
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-..|+|++||+|+ |+|..... ++++..-+. ...| ......++|++|
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~--------------------~HnV~s~~~---~~f~------s~~~~~~~G~t~--- 86 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGG--------------------GHNVVSDGD---GDLD------ESERVSEEGTTY--- 86 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCC--------------------CEEEEECCC---CCcc------ccccccCCCCEE---
Confidence 4579999999966 66443221 566654210 0011 000124678877
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.| + .+|+|-|+|-.|. .+||.|.|+|+
T Consensus 87 s~Tf--~-~~G~Y~Y~C~pH~------~~gM~G~I~V~ 115 (115)
T TIGR03102 87 EHTF--E-EPGIYLYVCVPHE------ALGMKGAVVVE 115 (115)
T ss_pred EEEe--c-CCcEEEEEccCCC------CCCCEEEEEEC
Confidence 7776 3 7899999999873 46999999984
No 53
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.10 E-value=0.071 Score=59.40 Aligned_cols=204 Identities=16% Similarity=0.246 Sum_probs=129.5
Q ss_pred CcEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEE-EEecCCCccCccEEecEEEeCcceEEEEEEEc
Q 008071 272 GDAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFI-HVAADSAYLGRPVVTNETLLAPSEIADVVIDF 348 (579)
Q Consensus 272 gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~-via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~ 348 (579)
-..++|||+. .|.|.++. +++.++++|-.. ..+.||- ||.... --..||.++. .=-|.|||.+---++.
T Consensus 47 ~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihW-hGv~q~kn~w~DG~~~T------qCPI~Pg~~~tY~F~v 118 (563)
T KOG1263|consen 47 KQVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHW-HGVRQRKNPWQDGVYIT------QCPIQPGENFTYRFTV 118 (563)
T ss_pred ceeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEe-ccccccCCccccCCccc------cCCcCCCCeEEEEEEe
Confidence 3589999994 69999987 999999999965 6688888 784332 2344995542 3357899988888888
Q ss_pred CCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec-----
Q 008071 349 SESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS----- 423 (579)
Q Consensus 349 ~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~----- 423 (579)
++..| +++=.+........| ..-.+.|.... .+| .|++ ..+.++.+.+.+.-.
T Consensus 119 ~~q~G-T~~yh~h~~~~Ra~G--------~~G~liI~~~~-----~~p---~pf~-----~pd~E~~ill~dW~~~~~~~ 176 (563)
T KOG1263|consen 119 KDQIG-TLWYHSHVSWQRATG--------VFGALIINPRP-----GLP---VPFP-----KPDKEFTILLGDWYKNLNHK 176 (563)
T ss_pred CCcce-eEEEeeccccccccC--------ceeEEEEcCCc-----cCC---CCCC-----CCCceeEEEeEeeccccCHH
Confidence 85555 555444432221111 11123333221 111 1121 223344444433211
Q ss_pred -------CC----CCcceEEEcCeecCC---CcccccCCCCeEEEEEEeCCCC--CceeeeeeccEEEEeEechhhhHHh
Q 008071 424 -------DI----DEPTHLFINGKSYEE---PVTETPKAGTSEVWNVINLTED--NHPLHIHLGLFVVLDQRELVKLEEF 487 (579)
Q Consensus 424 -------~~----g~~~~~~iNg~~~~~---~~~~~~~~G~~~~w~l~N~~~~--~HP~HlHg~~Fqvl~~~~~~~~~~~ 487 (579)
.. ..+....|||+.... ...+++..|++..|+|+|.+.. .+ |.|-+|++.|++.+
T Consensus 177 ~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~D-------- 247 (563)
T KOG1263|consen 177 NLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVD-------- 247 (563)
T ss_pred HHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEec--------
Confidence 00 113457899987332 2456889999999999997643 44 99999999999984
Q ss_pred hhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEe
Q 008071 488 KACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 488 ~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
|. .-+|.--|++.+.||++..+++..+
T Consensus 248 --------------------g~-----y~~p~~~~~l~i~~GQ~~~vLvtad 274 (563)
T KOG1263|consen 248 --------------------GA-----YTKPFTTDSLDIHPGQTYSVLLTAD 274 (563)
T ss_pred --------------------ce-----EEeeeeeceEEEcCCcEEEEEEeCC
Confidence 21 2234567999999999999988877
No 54
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=96.78 E-value=0.013 Score=54.53 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=58.1
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCC---CCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcce
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHIL---PWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWT 178 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~---~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~ 178 (579)
+||.+-.|-.|.|+|+|.-...|-+ +.++..+. .|. .....-.+-+-|...+. +..+ .+..|.+.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~-~~~-~s~dgkil~~vG~~~s~--------~~~N-Gi~~Gqs~- 152 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPR-GPI-WAHTGKIINSTGATTSI--------YYGN-GISSGHSR- 152 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCC-ccc-cccCceeEeecccccCc--------cccc-ccccccee-
Confidence 9999999999999999986543311 11111110 000 00001122222222111 1111 24456654
Q ss_pred eeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 179 KKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 179 ~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
.-.|.+- ++|+|||=|-.-| |..+||+|-+||-+.
T Consensus 153 --sg~~~~~-~~G~YwlvCgipG----HAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 --SGWWNDT-SAGKYWLVCGITG----HAESGMWAVVIVSSN 187 (195)
T ss_pred --EEEeccC-CCeeEEEEcccCC----hhhcCcEEEEEEecC
Confidence 4556666 9999999999876 567999999999843
No 55
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.75 E-value=0.025 Score=53.68 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=66.3
Q ss_pred ceeeecCCCCCCCCC-ccEEEEECCCEEEEEEEcCCCCCCCCC---CCCCCCCCCCCCCCCCCeEEeeCCCC--CCCCCC
Q 008071 86 PVYAYGTSKHTATVP-GPTIEALHGIDTYVTWQNHLPSKHILP---WDPTIPTAIPRKKKGIPTVVHLHGGI--DEPESD 159 (579)
Q Consensus 86 ~~w~y~~~~~ng~~P-GPtI~v~~Gd~v~v~~~N~l~~~~~~~---~d~~~~~~~p~~~~~~~t~iH~HG~~--~~~~~D 159 (579)
..+.|| |..- -++|.+-.|-+|.|+|+|.-.-.|-+- -++..+. .-.+-.+|-. ....+
T Consensus 74 ~~~nfn-----Gts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~---------~~~i~~DgkIl~~~G~s- 138 (196)
T PF06525_consen 74 NPFNFN-----GTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPN---------NPPISSDGKILLYVGAS- 138 (196)
T ss_pred Cceeee-----cccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCC---------ccccCCCCceeeeccCC-
Confidence 355665 5433 589999999999999999755444221 1111111 1112222211 11111
Q ss_pred CCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 160 GNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 160 G~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
+++ ++...|.+|++. .-.|..- ++|+|||=|-.-| |..+||++-|+|.+.
T Consensus 139 --~~~-~~~~GI~~G~s~---~~~~~~l-~aG~YwlvC~ipG----HA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 139 --PGN-YTSNGISSGQSA---SGVYNDL-PAGYYWLVCGIPG----HAESGMWGVLIVSSN 188 (196)
T ss_pred --CCc-cccCCccCCcee---eEEEccC-CCceEEEEccCCC----hhhcCCEEEEEEecC
Confidence 111 222246788877 5556555 8999999999976 677999999999954
No 56
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.73 E-value=0.035 Score=49.83 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeee
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHL 470 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg 470 (579)
.|..+.++.|+.++|++.|.+...|.|-+++
T Consensus 59 ~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~ 89 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVENKSPISEGFSIDA 89 (135)
T ss_pred cCCEEEECCCCEEEEEEEeCCCCccceEECC
Confidence 5778889999999999999988777766655
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=95.15 E-value=0.075 Score=45.31 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=31.6
Q ss_pred ceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 522 NVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 522 DTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.+..+.||++..+ .|. .+| |.|+|- - |...||-..+.|
T Consensus 60 ~~~~~~~G~~~~~--tF~--------------~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 60 SSPLLAPGETYSV--TFT--------------KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp EEEEBSTTEEEEE--EEE--------------SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred cceecCCCCEEEE--EeC--------------CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 5667889998766 776 467 999999 5 999999999887
No 58
>PRK02710 plastocyanin; Provisional
Probab=95.00 E-value=0.082 Score=46.77 Aligned_cols=73 Identities=32% Similarity=0.447 Sum_probs=51.1
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG 519 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~ 519 (579)
.|..+.++.|+++.|+ |.+...|.+.+.+.. + . .
T Consensus 45 ~P~~i~v~~Gd~V~~~--N~~~~~H~v~~~~~~-----------------------------------~--~-------~ 78 (119)
T PRK02710 45 EPSTLTIKAGDTVKWV--NNKLAPHNAVFDGAK-----------------------------------E--L-------S 78 (119)
T ss_pred eCCEEEEcCCCEEEEE--ECCCCCceEEecCCc-----------------------------------c--c-------c
Confidence 3667789999999885 766678887643210 0 0 0
Q ss_pred ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 520 WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 520 ~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.+| ..+.||++.++ .|. .|| |.|+|= .|...||-..+.|
T Consensus 79 ~~~-~~~~pg~t~~~--tF~--------------~~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 79 HKD-LAFAPGESWEE--TFS--------------EAGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred ccc-cccCCCCEEEE--Eec--------------CCEEEEEEcC--CCccCCcEEEEEE
Confidence 112 34678887655 776 467 999996 8999999999987
No 59
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.50 E-value=0.3 Score=44.60 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=66.5
Q ss_pred CCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcc
Q 008071 98 TVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTW 177 (579)
Q Consensus 98 ~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~ 177 (579)
.+++-.+.++.|.+++..+.|.-.-.|....+.... +-..-.|....+ .+++.-.+.+ .++||++-
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~----------~~~~~~~~~~~~-Dme~d~~~~v---~L~PG~s~ 124 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDK----------NLEHVTHMILAD-DMEHDDPNTV---TLAPGKSG 124 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccc----------cchhHHHhhhCC-ccccCCccee---EeCCCCcE
Confidence 467888999999999999999866554333221100 111112222222 3334322223 37999999
Q ss_pred eeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 178 TKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 178 ~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.|... .+|.|-.-|-.-| |+.+||.|-|.|.
T Consensus 125 ---elvv~ft-~~g~ye~~C~iPG----Hy~AGM~g~itV~ 157 (158)
T COG4454 125 ---ELVVVFT-GAGKYEFACNIPG----HYEAGMVGEITVS 157 (158)
T ss_pred ---EEEEEec-CCccEEEEecCCC----cccCCcEEEEEeC
Confidence 8889887 8999999999976 6779999999886
No 60
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.21 Score=45.62 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=69.2
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG 519 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~ 519 (579)
.|....++.|++++..+.|...--|=|=+= ++....+ .+. .+.. .+..+..
T Consensus 61 ~p~~~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~------~~~-~~~~-------------------~~Dme~d 111 (158)
T COG4454 61 KPSSFEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE------HVT-HMIL-------------------ADDMEHD 111 (158)
T ss_pred CCCcccccCCcEEeeeecCcccceEEEecc---Cccccch------hHH-Hhhh-------------------CCccccC
Confidence 567788999999999999987767766543 2222211 011 0000 0012335
Q ss_pred ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 520 WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 520 ~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
-..++.|.||.+..+++.|. ++| |-+-|=|-.|-|.||-..|+|-
T Consensus 112 ~~~~v~L~PG~s~elvv~ft--------------~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 112 DPNTVTLAPGKSGELVVVFT--------------GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CcceeEeCCCCcEEEEEEec--------------CCccEEEEecCCCcccCCcEEEEEeC
Confidence 67899999999999999997 567 9999999999999999999874
No 61
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.49 E-value=0.25 Score=42.38 Aligned_cols=31 Identities=29% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeee
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHL 470 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg 470 (579)
.|....++.|+.+.+++.|.+...|-|.+-+
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~ 63 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRPHEFVIPD 63 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS-EEEEEGG
T ss_pred ecCEEEEcCCCeEEEEEEECCCCcEEEEECC
Confidence 3667789999999999999987766655544
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.54 E-value=0.39 Score=39.47 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=23.4
Q ss_pred CeecCCCcccccCCCCeEEEEEEeCCCCCceeeee
Q 008071 435 GKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIH 469 (579)
Q Consensus 435 g~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlH 469 (579)
+-.|. |..+.++.|+++.| .|.+...|-++++
T Consensus 5 ~~~F~-P~~i~v~~GdtVt~--~N~d~~~Hnv~~~ 36 (83)
T TIGR02657 5 KMKYE-TPELHVKVGDTVTW--INREAMPHNVHFV 36 (83)
T ss_pred eeEEc-CCEEEECCCCEEEE--EECCCCCccEEec
Confidence 34443 56678999999998 4776678888764
No 63
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=89.63 E-value=0.39 Score=30.34 Aligned_cols=21 Identities=29% Similarity=0.113 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 008071 3 IVERVLFLYLMFLAAARVMIS 23 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~~ 23 (579)
.+|||+||..+++++++.+..
T Consensus 1 ~~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CCcHHHHHHHHHHHHHHHHhc
Confidence 379999999886666554433
No 64
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=86.04 E-value=2.4 Score=37.34 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.0
Q ss_pred CCc-eEEeeccccccccCccccEEEcC
Q 008071 554 EPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 554 npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.+| |-|+|= .|...||-..+.|-+
T Consensus 64 ~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 64 EEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCEEEEEEcC--CCccCCCEEEEEECC
Confidence 567 999997 999999999998853
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=85.15 E-value=4.9 Score=35.54 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=48.9
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
.+.|++..|++|++.+++.-- -++...-++. +.. .+.||..-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DV----------------------iHsf~ip~~~------------~k~-d~~PG~~~--- 86 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDV----------------------IHSFWIPELG------------IKM-DAIPGRTN--- 86 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS-----------------------EEEEETTCT------------EEE-EEBTTCEE---
T ss_pred cceecccccceEeEEEEcCCc----------------------cccccccccC------------ccc-ccccccce---
Confidence 578999999999999999522 2444333221 111 25688877
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIV 217 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV 217 (579)
...|.++ .+|+|++.|...--. .| +-|.|-++|
T Consensus 87 ~~~~~~~-~~G~y~~~C~e~CG~-gH--~~M~~~v~V 119 (120)
T PF00116_consen 87 SVTFTPD-KPGTYYGQCAEYCGA-GH--SFMPGKVIV 119 (120)
T ss_dssp EEEEEES-SSEEEEEEE-SSSST-TG--GG-EEEEEE
T ss_pred eeeeeec-cCCcEEEcCccccCc-Cc--CCCeEEEEE
Confidence 7888887 999999999864322 23 556676665
No 66
>PRK02888 nitrous-oxide reductase; Validated
Probab=84.24 E-value=3.8 Score=46.10 Aligned_cols=76 Identities=22% Similarity=0.218 Sum_probs=50.4
Q ss_pred CCcccccCCCCeEEEEEEeCCC---CCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccc
Q 008071 440 EPVTETPKAGTSEVWNVINLTE---DNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEH 516 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~---~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~ 516 (579)
.+..+.++.|+.+.|.+.|... ..|-|-+-++..
T Consensus 553 ~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI------------------------------------------- 589 (635)
T PRK02888 553 GLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV------------------------------------------- 589 (635)
T ss_pred CCceEEecCCCEEEEEEEeCCcccccccceeecccCc-------------------------------------------
Confidence 3556789999999999999743 367666633211
Q ss_pred cCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccc-cCccccEEEc
Q 008071 517 EKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHED-NVMMRPLKLI 578 (579)
Q Consensus 517 ~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed-~GMm~~~~V~ 578 (579)
-+.+.||++..+ .|. ++.|| |.+||...-|.- .+|...+.|.
T Consensus 590 ------~~dv~PG~t~sv--tF~------------adkPGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 590 ------NMEVAPQATASV--TFT------------ADKPGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred ------cEEEcCCceEEE--EEE------------cCCCEEEEEECCcccccCcccceEEEEEE
Confidence 124557787766 454 24789 999999855442 3676666663
No 67
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=82.96 E-value=11 Score=30.96 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=39.2
Q ss_pred EEEEEEEecCCCeeEEEEEcCCCeEEEEe--cCCCccCc-------cEEecEEEeCcceEEEEEEEcCCCC--CcEEEEe
Q 008071 291 KYRFRIINASNARFYRFFFTNGLRFIHVA--ADSAYLGR-------PVVTNETLLAPSEIADVVIDFSESK--SDVAILA 359 (579)
Q Consensus 291 ~~RlRllNa~~~~~~~l~l~~g~~f~via--~DG~~l~~-------p~~~~~l~l~pgeR~dvlv~~~~~~--g~~~~l~ 359 (579)
.+.|++.|.|... ..|.+..|+.+.++- .+|..+=. -.......|.|||....-...+... +++|.|.
T Consensus 3 ~~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 4678899999854 778887787765554 46655411 1224688999999988888877765 4578775
No 68
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=82.65 E-value=5.6 Score=35.57 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=51.1
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG 519 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~ 519 (579)
+|...+++.|+++.|+ |.+...|..+.=+-. .+.
T Consensus 52 ~PA~v~v~pGDTVtw~--~~d~~~Hnv~~~~~~--------------------------------------------~~~ 85 (128)
T COG3794 52 EPAEVTVKPGDTVTWV--NTDSVGHNVTAVGGM--------------------------------------------DPE 85 (128)
T ss_pred cCcEEEECCCCEEEEE--ECCCCCceEEEeCCC--------------------------------------------Ccc
Confidence 5777889999999986 554456766542211 122
Q ss_pred ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 520 WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 520 ~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+-+++...++++.+. .|. .|| |.|.| ..|..+||-..+.|
T Consensus 86 g~~~~~~~~~~s~~~--Tfe--------------~~G~Y~Y~C--~PH~~~gM~G~IvV 126 (128)
T COG3794 86 GSGTLKAGINESFTH--TFE--------------TPGEYTYYC--TPHPGMGMKGKIVV 126 (128)
T ss_pred cccccccCCCcceEE--Eec--------------ccceEEEEe--ccCCCCCcEEEEEe
Confidence 445555556676655 676 467 99999 57999999998876
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=82.58 E-value=6.2 Score=34.67 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=27.0
Q ss_pred eCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 526 MTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 526 v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
..+|++.++ .|. .|| |-|+|= .|...||-..+.|
T Consensus 80 ~~~G~t~s~--Tf~--------------~~G~Y~Y~C~--pH~~~gM~G~I~V 114 (115)
T TIGR03102 80 SEEGTTYEH--TFE--------------EPGIYLYVCV--PHEALGMKGAVVV 114 (115)
T ss_pred cCCCCEEEE--Eec--------------CCcEEEEEcc--CCCCCCCEEEEEE
Confidence 456776644 675 568 999997 8999999998887
No 70
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=79.63 E-value=2.5 Score=29.38 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 008071 3 IVERVLFLYLMFLAAARVMISS 24 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~~~ 24 (579)
.|+||+||-+.+++++++.+.+
T Consensus 5 dm~RR~lmN~ll~Gava~~a~~ 26 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAGG 26 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHHHHHHH
Confidence 5999999988777766555443
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=76.45 E-value=11 Score=36.57 Aligned_cols=79 Identities=10% Similarity=0.015 Sum_probs=55.0
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
...|++..|++|++++++. -.+ ||..++.- |. .. .+.||..-
T Consensus 116 ~~~l~vp~g~~v~~~~ts~-------------------------DV~--Hsf~ip~~--~~-----k~-da~PG~~~--- 157 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK-------------------------DVI--HSFWVPEL--GG-----KI-DAIPGQYN--- 157 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC-------------------------chh--hccccccc--Cc-----eE-EecCCcEE---
Confidence 4589999999999999984 122 66666543 21 11 24577766
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
+..|.++ ++|+|...|..-.-. .| +.|.+-++|..++
T Consensus 158 ~~~~~~~-~~G~y~~~c~e~cG~-~h--~~M~~~v~v~~~~ 194 (201)
T TIGR02866 158 ALWFNAD-EPGVYYGYCAELCGA-GH--SLMLFKVVVVERE 194 (201)
T ss_pred EEEEEeC-CCEEEEEEehhhCCc-Cc--cCCeEEEEEECHH
Confidence 7788887 899999998863211 23 7799999998543
No 72
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=74.26 E-value=36 Score=36.22 Aligned_cols=76 Identities=20% Similarity=0.101 Sum_probs=48.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEee-CCCCCCCCCCCCCCccccccccCCCCccee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHL-HGGIDEPESDGNANSWFTAGFKEKGPTWTK 179 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~-HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~ 179 (579)
-..+.|..|+ +.+.++|.-.. ++..-. -|..+-.+ ...|.||.+.
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~---------------------~~Efe~~~~~~vv~e----------~EnIaPG~s~-- 88 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQK---------------------ALEWEILKGVMVVEE----------RENIAPGFSQ-- 88 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCC---------------------cceEEeecccccccc----------ccccCCCCce--
Confidence 4468999996 88899998665 222111 11111000 1137899888
Q ss_pred eeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 180 KTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 180 ~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
.+.++. .+|+|-|+|-.|+ .+.|.++|.++.
T Consensus 89 -~l~~~L--~pGtY~~~C~~~~--------~~~g~l~Vtg~~ 119 (375)
T PRK10378 89 -KMTANL--QPGEYDMTCGLLT--------NPKGKLIVKGEA 119 (375)
T ss_pred -EEEEec--CCceEEeecCcCC--------CCCceEEEeCCC
Confidence 776665 6999999995542 347899999754
No 73
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=72.59 E-value=4.4 Score=28.62 Aligned_cols=22 Identities=23% Similarity=0.057 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 008071 3 IVERVLFLYLMFLAAARVMISS 24 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~~~ 24 (579)
..+||.||.++..+.+++++++
T Consensus 8 ~~~RRdFL~~at~~~gavG~~~ 29 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAAA 29 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 3689999977655555554443
No 74
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=71.84 E-value=27 Score=31.03 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=29.2
Q ss_pred ccCCCCcceeeeEEEeCCC-CCce-eeeecCCCChhhhhhcccceEEEE
Q 008071 170 FKEKGPTWTKKTYHYHNMQ-QPGN-LWYHDHAMGLTRINLLAGLVGAYI 216 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~-~~Gt-~wYH~H~~g~t~~qv~~GL~G~lI 216 (579)
.|.+||+. +..|+++. .+|+ |-|-|-.-| | ++.|.|.+.
T Consensus 84 liggGes~---svtF~~~~l~~g~~Y~f~CSFPG----H-~~~MkG~l~ 124 (125)
T TIGR02695 84 VIGGGEKT---SVTFDVSKLSAGEDYTFFCSFPG----H-WAMMRGTVK 124 (125)
T ss_pred ccCCCceE---EEEEECCCCCCCCcceEEEcCCC----c-HHhceEEEe
Confidence 47899988 88898752 5775 999999866 3 246888765
No 75
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=71.23 E-value=4 Score=32.02 Aligned_cols=19 Identities=21% Similarity=-0.122 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 008071 3 IVERVLFLYLMFLAAARVM 21 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~ 21 (579)
.++||.||..+.+++++.+
T Consensus 8 ~~sRR~Flk~lg~~aaa~~ 26 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAAAGA 26 (66)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 4799999987655544333
No 76
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=71.14 E-value=12 Score=37.49 Aligned_cols=79 Identities=11% Similarity=-0.110 Sum_probs=56.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
...|.+..|.+|+++++-.-- .||..++.- |. .. .+.||...
T Consensus 136 ~n~l~lPv~~~V~f~ltS~DV---------------------------iHsF~IP~l--~~-----k~-d~iPG~~~--- 177 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSADV---------------------------IHSFWIPQL--GG-----KI-DAIPGMTT--- 177 (247)
T ss_pred cceEEEeCCCeEEEEEEechh---------------------------ceeEEecCC--Cc-----ee-eecCCceE---
Confidence 478999999999999887511 255555543 11 11 25678766
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
++.++++ ++|+|.-+|+...-.. -+.|.|.++|.+++
T Consensus 178 ~~~~~~~-~~G~Y~g~Cae~CG~g---H~~M~~~v~vvs~~ 214 (247)
T COG1622 178 ELWLTAN-KPGTYRGICAEYCGPG---HSFMRFKVIVVSQE 214 (247)
T ss_pred EEEEecC-CCeEEEEEcHhhcCCC---cccceEEEEEEcHH
Confidence 8888887 9999999999643222 27899999999654
No 77
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=65.16 E-value=5.5 Score=25.74 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 008071 4 VERVLFLYLMFLAAARVMIS 23 (579)
Q Consensus 4 ~~r~~~l~~~~~~~~~~~~~ 23 (579)
++||.||....+++++++..
T Consensus 1 ~sRR~Flk~~~~~~a~~~~~ 20 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAGLG 20 (29)
T ss_pred CchhhhHHHHHHHHHHHhcc
Confidence 58999999886666655543
No 78
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=63.59 E-value=31 Score=33.16 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=60.8
Q ss_pred eEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCc
Q 008071 430 HLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGK 509 (579)
Q Consensus 430 ~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~ 509 (579)
.+-+||..+.+ ..+.++.|-.+..+|.|...+.|-+ -|+....-. ..+..+ + .|. .+..+ .|.
T Consensus 75 ~~nfnGts~G~-m~i~VPAGw~V~i~f~N~~~l~Hnl-------~iv~~~~~~---p~~~~i-~-~Dg---kIl~~-~G~ 137 (196)
T PF06525_consen 75 PFNFNGTSNGQ-MTIYVPAGWNVQITFTNQESLPHNL-------VIVQNDTPT---PNNPPI-S-SDG---KILLY-VGA 137 (196)
T ss_pred ceeeecccCCc-EEEEEcCCCEEEEEEEcCCCCCeeE-------EEEeCCCCC---CCcccc-C-CCC---ceeee-ccC
Confidence 57788876643 4567889999999999988777754 445332100 000000 0 000 00000 121
Q ss_pred ccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 510 KLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 510 ~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.+.+. -. =-+.+|++.+. -|.. -.+| |.+=|=+.-|...||-..+.|.
T Consensus 138 -s~~~~----~~--~GI~~G~s~~~--~~~~------------l~aG~YwlvC~ipGHA~sGMw~~LiVs 186 (196)
T PF06525_consen 138 -SPGNY----TS--NGISSGQSASG--VYND------------LPAGYYWLVCGIPGHAESGMWGVLIVS 186 (196)
T ss_pred -CCCcc----cc--CCccCCceeeE--EEcc------------CCCceEEEEccCCChhhcCCEEEEEEe
Confidence 00000 00 12336666544 2321 1457 9999999999999999988874
No 79
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=62.41 E-value=80 Score=29.98 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=29.8
Q ss_pred eEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeee
Q 008071 430 HLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHI 468 (579)
Q Consensus 430 ~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~Hl 468 (579)
.+-+||..+.. .++.++.|-.+..+|.|.....|.+=+
T Consensus 74 ~fNfnGts~G~-mtIyiPaGw~V~V~f~N~e~~pHnl~i 111 (195)
T TIGR03094 74 PFNFNGTSYGA-MTIYLPAGWNVYVTFTNYESLPHNLKL 111 (195)
T ss_pred cccccCccCCc-eEEEEeCCCEEEEEEEcCCCCCccEEE
Confidence 46788888754 566789999999999999877765544
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=50.52 E-value=22 Score=38.21 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=48.2
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeee
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKT 181 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~ 181 (579)
-++.|++||.|.+.++|--. ..--.||.-.+.- |+. + .+.|-++- .
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~-----------------------Ved~thgfv~p~~--~v~---~---~v~pq~ta---s 603 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDE-----------------------VEDLTHGFVIPNY--GVN---M---EVKPQRTA---S 603 (637)
T ss_pred EEEEEecCcEEEEEecccce-----------------------eccccceeeeccC--ceE---E---EEccCCce---E
Confidence 36778888888888888532 2223345443332 222 2 14555555 8
Q ss_pred EEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 182 YHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 182 y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
|.|.++ .+|.+||.|--.- .-+-+-|+|-+||+
T Consensus 604 vtf~a~-kpgv~w~ycs~fc---halh~em~~rmlve 636 (637)
T COG4263 604 VTFYAD-KPGVAWYYCSWFC---HALHMEMAGRMLVE 636 (637)
T ss_pred EEEEcc-CCeeeehhhhhHH---HHHHHhhccceeec
Confidence 889998 9999999775421 11235577877876
No 81
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=44.40 E-value=43 Score=29.80 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=47.7
Q ss_pred CeEEecC--cEEEEEEEecCCCe----eEEEEEcCCCeEEEEec-------CCCccCcc---EEecEEEeCcceEEEEEE
Q 008071 283 PRMTVRR--RKYRFRIINASNAR----FYRFFFTNGLRFIHVAA-------DSAYLGRP---VVTNETLLAPSEIADVVI 346 (579)
Q Consensus 283 P~~~v~~--~~~RlRllNa~~~~----~~~l~l~~g~~f~via~-------DG~~l~~p---~~~~~l~l~pgeR~dvlv 346 (579)
..|+|++ +.+.+.|-|.+... -|++-|...-.+.-|+. |-+|++.. +-.-+=+|++||...|-+
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 3577775 68999999998643 36666643333443333 45666432 233566899999999999
Q ss_pred EcCC-CCCcEEEE
Q 008071 347 DFSE-SKSDVAIL 358 (579)
Q Consensus 347 ~~~~-~~g~~~~l 358 (579)
+.+. .+|..|.+
T Consensus 96 ~~~~l~~g~~Y~f 108 (125)
T TIGR02695 96 DVSKLSAGEDYTF 108 (125)
T ss_pred ECCCCCCCCcceE
Confidence 8874 23433443
No 82
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=43.03 E-value=1.2e+02 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=21.7
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeee
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHL 470 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg 470 (579)
+....++.|+.+.+.+.+.+ -.|-|.+-.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~ 73 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VIHSFWIPE 73 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S-EEEEETT
T ss_pred cceecccccceEeEEEEcCC-ccccccccc
Confidence 34567899999999999964 578877754
No 83
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=40.30 E-value=76 Score=26.86 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=22.4
Q ss_pred CCCCcEEEECCcccCeEEecC--cEEEEEEEecC
Q 008071 269 EYFGDAIIVNGKAWPRMTVRR--RKYRFRIINAS 300 (579)
Q Consensus 269 ~~~gd~~~VNG~~~P~~~v~~--~~~RlRllNa~ 300 (579)
.++|.+..+||+ |.+.+.. +.|++.+.--+
T Consensus 14 ~~~G~W~Sv~~~--P~v~I~r~g~~Y~vti~~~~ 45 (95)
T PF12992_consen 14 KICGEWESVNGK--PDVTIYRNGGSYKVTITYRS 45 (95)
T ss_pred eeEEEeEccCCC--CCEEEEECCCeEEEEEEEEc
Confidence 467899999996 7777654 78888876544
No 84
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=39.48 E-value=26 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.026 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 008071 4 VERVLFLYLMFLAAARVM 21 (579)
Q Consensus 4 ~~r~~~l~~~~~~~~~~~ 21 (579)
|+||.||+++++++++++
T Consensus 1 ~~RR~fl~~~~~~~~~~~ 18 (328)
T PRK10882 1 MNRRNFLKAASAGALLAG 18 (328)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 689999997655444443
No 85
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=33.13 E-value=3.2e+02 Score=23.53 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=11.1
Q ss_pred EEEEEecCCC-eeEEEEE
Q 008071 293 RFRIINASNA-RFYRFFF 309 (579)
Q Consensus 293 RlRllNa~~~-~~~~l~l 309 (579)
++|++|++.. ..+.+.+
T Consensus 3 ~Vr~~hasp~~~~vdv~~ 20 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYV 20 (122)
T ss_pred EEEEEEcCCCCccEEEEE
Confidence 6777777765 4455555
No 86
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=32.84 E-value=35 Score=32.34 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 008071 3 IVERVLFLYLMFLAAARVMI 22 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~ 22 (579)
.++||.||..++++++++++
T Consensus 11 d~~RR~FL~~~~~~~gg~~a 30 (178)
T PRK13474 11 SMGRRQFMNLLTFGTVTGVA 30 (178)
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 47999999877655554433
No 87
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=32.71 E-value=2e+02 Score=26.64 Aligned_cols=21 Identities=24% Similarity=-0.088 Sum_probs=14.4
Q ss_pred CchhhHHHHHHHHHHHHHHHH
Q 008071 1 MAIVERVLFLYLMFLAAARVM 21 (579)
Q Consensus 1 ~~~~~r~~~l~~~~~~~~~~~ 21 (579)
|..++||++|+++..+++++.
T Consensus 5 ~~~~~rr~~l~~~~~~~~~~~ 25 (154)
T PRK07474 5 PMALSRRQALALGGGALAAAV 25 (154)
T ss_pred cCCcCHHHHHHHHHHHHHHHh
Confidence 346899999988755544433
No 88
>PRK13616 lipoprotein LpqB; Provisional
Probab=31.12 E-value=64 Score=36.72 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=21.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhccccccC
Q 008071 1 MAIVERVLFLYLMFLAAARVMISSAARTEER 31 (579)
Q Consensus 1 ~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 31 (579)
|+.+.|+.++++++++++++++|++.+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~sgCa~iP~~s~ 31 (591)
T PRK13616 1 SRISRRLKLLAALLAVAALLAGCATLPSSSA 31 (591)
T ss_pred CCchhHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 3455666666666777778899988775443
No 89
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=29.11 E-value=2.6e+02 Score=24.49 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=40.6
Q ss_pred eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCC
Q 008071 284 RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKS 353 (579)
Q Consensus 284 ~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g 353 (579)
+|.+.. +.|+|.+...+. .+|.| ||. .+|..++..-..+.....+.|..|+++.|.|++.+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~~~---~~l~I-dg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITSDDG---ARLWI-DGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEcCCc---EEEEE-CCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 456655 889999854443 56778 564 23433332211233445789999999999998866543
No 90
>PRK09898 hypothetical protein; Provisional
Probab=29.04 E-value=28 Score=33.83 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 008071 3 IVERVLFLYLMFLAAARVMI 22 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~ 22 (579)
.++||.||..++.+++++++
T Consensus 12 ~~~RR~flk~~~~~~~g~~~ 31 (208)
T PRK09898 12 GLTRLEFLRISGKGLAGLTI 31 (208)
T ss_pred chhHHHHHHhhcchhhhhhh
Confidence 48999999887554444333
No 91
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=28.58 E-value=3.9e+02 Score=23.42 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=41.0
Q ss_pred eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCcc------CccEEecEEEeCcceEEEEEEEcCCCC
Q 008071 284 RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYL------GRPVVTNETLLAPSEIADVVIDFSESK 352 (579)
Q Consensus 284 ~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l------~~p~~~~~l~l~pgeR~dvlv~~~~~~ 352 (579)
+|.+.. +.|+|++-..+. .+|.| ||.. +|..++..- ..+....++.|..|++++|-|.+.+..
T Consensus 53 ~~~~~~~G~y~f~~~~~d~---~~l~i-dg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDDG---ARLWI-DGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEESSSEEEEEEEEESSE---EEEEE-TTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEecccCceEEEEEEeccc---EEEEE-CCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 566766 899999984443 66778 5643 355554332 134556788999999999999876553
No 92
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=28.51 E-value=4.9e+02 Score=27.67 Aligned_cols=15 Identities=20% Similarity=0.018 Sum_probs=10.3
Q ss_pred ccCCCCcceeeeEEEeCC
Q 008071 170 FKEKGPTWTKKTYHYHNM 187 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~ 187 (579)
+|+|||+. +.+..+.
T Consensus 320 pI~PGETr---tl~V~a~ 334 (381)
T PF04744_consen 320 PIAPGETR---TLTVEAQ 334 (381)
T ss_dssp -B-TT-EE---EEEEEEE
T ss_pred CcCCCceE---EEEEEee
Confidence 79999999 8888875
No 93
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=26.72 E-value=2.4e+02 Score=24.26 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEEEEEecCCC-eeEEEEEcCCC-eEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 291 KYRFRIINASNA-RFYRFFFTNGL-RFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 291 ~~RlRllNa~~~-~~~~l~l~~g~-~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
.|+++|+|.+.. +.|.|.+. |. .+.+ . ...+.+.|+|||..++-|-..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~-g~~~~~l--------~--~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVE-GLPGAEL--------Q--GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEE-S-SS-EE-----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEe-cCCCeEE--------E--CCCcceEECCCCEEEEEEEEE
Confidence 799999999986 56777774 42 2222 0 123678889999887766443
No 94
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=24.68 E-value=90 Score=33.41 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=17.1
Q ss_pred CCccEEEEECCCEEEEEEEcC
Q 008071 99 VPGPTIEALHGIDTYVTWQNH 119 (579)
Q Consensus 99 ~PGPtI~v~~Gd~v~v~~~N~ 119 (579)
..+...++.+||.+.|++...
T Consensus 80 ~~~~~Y~igpGDvL~I~V~~~ 100 (379)
T PRK15078 80 IANYEYRVGPGDVLNVTVWDH 100 (379)
T ss_pred cCCCCcEECCCCEEEEEEecC
Confidence 345557999999999999875
No 95
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=22.84 E-value=3.4e+02 Score=28.99 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEcCeecCCCcccccCCCCeEEEEEEeCCCCCc
Q 008071 431 LFINGKSYEEPVTETPKAGTSEVWNVINLTEDNH 464 (579)
Q Consensus 431 ~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~H 464 (579)
.+|++..| .|....++.|++..| +.|.+...|
T Consensus 34 Vti~d~~c-~p~~~tVpAG~~~f~-V~N~~~~~~ 65 (375)
T PRK10378 34 VTVNDKQC-EPMTLTVNAGKTQFI-IQNHSQKAL 65 (375)
T ss_pred EEEECCcc-ccCceeeCCCCEEEE-EEeCCCCcc
Confidence 34555555 355667899985555 577765553
No 96
>PRK15396 murein lipoprotein; Provisional
Probab=22.28 E-value=77 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.2
Q ss_pred hhHH-HHHHHHHHHHHHHHhhhcc
Q 008071 4 VERV-LFLYLMFLAAARVMISSAA 26 (579)
Q Consensus 4 ~~r~-~~l~~~~~~~~~~~~~~~~ 26 (579)
|+|. ++++..+++++++++|+..
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 4564 4556666667788999754
No 97
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=22.06 E-value=1.8e+02 Score=24.81 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=20.1
Q ss_pred ccCCCCcceeeeEEEeCCCCCceeeeecCCC
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPGNLWYHDHAM 200 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~ 200 (579)
.+.||+++ .++|..+ --|+=-|.|+..
T Consensus 30 ~l~~g~~~---~~~F~~~-~~~~t~f~C~~~ 56 (110)
T PF05938_consen 30 VLKPGQSY---SFSFRDN-FFGTTLFWCHFR 56 (110)
T ss_pred ECCCCCEE---EEEEecC-cCCceeEEEEEE
Confidence 47899998 8899776 556666678774
No 98
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=21.90 E-value=72 Score=31.87 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 008071 3 IVERVLFLYLMFLAAA 18 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~ 18 (579)
.++||.||..++++++
T Consensus 2 ~~~RR~flk~~~~~~~ 17 (244)
T PRK14993 2 DSSKRQFLQQLGVLTA 17 (244)
T ss_pred CccHHHHHHHHHHHHH
Confidence 4789999986554333
No 99
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=20.95 E-value=69 Score=30.08 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=10.2
Q ss_pred CEEEEEEEcCCCC
Q 008071 110 IDTYVTWQNHLPS 122 (579)
Q Consensus 110 d~v~v~~~N~l~~ 122 (579)
|...|.++|.|--
T Consensus 128 ~a~~VaY~~ALm~ 140 (168)
T PF12318_consen 128 DARVVAYEEALMY 140 (168)
T ss_pred CceEEehHHhhcc
Confidence 6777788888875
Done!