Query 008071
Match_columns 579
No_of_seqs 311 out of 2203
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsd_A Spore coat protein A; o 100.0 1.6E-95 5E-100 802.0 54.8 502 37-579 2-510 (513)
2 2g23_A PHS, phenoxazinone synt 100.0 5.1E-94 1.8E-98 797.2 47.5 506 32-578 5-590 (612)
3 3gyr_A PHS, phenoxazinone synt 100.0 7.4E-93 2.5E-97 799.6 47.3 506 33-579 6-591 (612)
4 3abg_A Bilirubin oxidase; clea 100.0 2.5E-89 8.6E-94 753.6 46.8 454 34-578 4-474 (534)
5 3od3_A Blue copper oxidase CUE 100.0 1.3E-89 4.4E-94 744.1 39.0 437 43-577 4-488 (488)
6 2uxt_A Protein SUFI, SUFI; oxi 100.0 9.5E-89 3.3E-93 736.5 39.3 430 40-578 2-440 (451)
7 3zx1_A Oxidoreductase, putativ 100.0 5.5E-88 1.9E-92 731.7 43.4 434 40-579 30-481 (481)
8 3aw5_A Multicopper oxidase; be 100.0 7.7E-85 2.6E-89 704.9 41.1 430 37-578 3-448 (448)
9 2xu9_A Laccase; oxidoreductase 100.0 1.5E-83 5E-88 694.7 38.4 423 43-577 2-438 (439)
10 1zpu_A Iron transport multicop 100.0 3.5E-80 1.2E-84 682.0 43.3 433 65-577 3-479 (534)
11 1v10_A Laccase; multicopper bl 100.0 1.1E-79 3.7E-84 677.0 45.3 417 66-578 25-490 (521)
12 1hfu_A Laccase 1; oxidoreducta 100.0 7.7E-79 2.6E-83 667.9 41.9 413 66-578 6-469 (503)
13 2q9o_A Laccase-1; multicopper 100.0 8.7E-78 3E-82 666.7 43.0 427 65-577 34-519 (559)
14 1aoz_A Ascorbate oxidase; oxid 100.0 4.1E-77 1.4E-81 661.5 46.1 422 65-577 4-523 (552)
15 3t6v_A Laccase; beta barrel, o 100.0 3.1E-75 1.1E-79 635.5 47.4 411 66-577 6-469 (495)
16 3sqr_A Laccase; multicopper ox 100.0 9.8E-76 3.4E-80 647.1 43.5 414 65-577 68-542 (580)
17 3pxl_A Laccase; 4-copper prote 100.0 7.3E-75 2.5E-79 632.7 46.0 410 66-577 5-469 (499)
18 2r7e_A Coagulation factor VIII 100.0 5.5E-51 1.9E-55 463.4 13.0 234 68-351 50-304 (742)
19 3cg8_A Laccase; oxidoreductase 100.0 2.8E-49 9.6E-54 412.7 22.6 288 1-578 3-305 (343)
20 3t9w_A Small laccase, multi-co 100.0 3.2E-49 1.1E-53 404.9 22.5 121 65-221 30-164 (299)
21 3kw8_A Laccase, putative coppe 100.0 7.1E-49 2.4E-53 398.3 23.0 242 65-578 8-264 (276)
22 3tas_A Small laccase, multi-co 100.0 9.7E-49 3.3E-53 404.2 21.8 243 65-579 14-271 (313)
23 3g5w_A Multicopper oxidase typ 100.0 8.6E-47 2.9E-51 390.2 27.4 244 65-361 3-253 (318)
24 1kbv_A ANIA, major outer membr 100.0 3.7E-46 1.3E-50 387.4 22.7 262 39-362 19-290 (327)
25 2zwn_A Two-domain type laccase 100.0 1.4E-44 4.7E-49 377.4 29.2 244 65-361 4-254 (339)
26 1oe1_A Dissimilatory copper-co 100.0 2.3E-44 7.8E-49 375.7 24.8 306 36-388 4-320 (336)
27 3gdc_A Multicopper oxidase; be 100.0 1.7E-43 5.8E-48 360.9 28.6 231 65-361 35-271 (288)
28 2j5w_A Ceruloplasmin, ferroxid 100.0 3.3E-43 1.1E-47 414.9 32.7 409 76-579 78-561 (1065)
29 2dv6_A Nitrite reductase; elec 100.0 1.3E-42 4.3E-47 376.3 34.0 351 95-578 49-432 (447)
30 2bw4_A Copper-containing nitri 100.0 5.8E-42 2E-46 358.1 27.7 286 35-362 9-307 (340)
31 2zoo_A Probable nitrite reduct 100.0 3.7E-42 1.3E-46 372.0 24.5 271 37-362 3-280 (442)
32 1mzy_A Copper-containing nitri 100.0 1.9E-41 6.4E-46 353.2 25.7 281 37-361 5-300 (333)
33 1sdd_A Coagulation factor V; c 100.0 1.4E-41 4.9E-46 349.6 11.7 228 95-578 54-299 (306)
34 2r7e_B Coagulation factor VIII 100.0 4.9E-41 1.7E-45 382.4 15.4 281 65-578 134-455 (770)
35 2j5w_A Ceruloplasmin, ferroxid 100.0 2.1E-38 7.2E-43 374.0 22.0 359 95-578 623-1057(1065)
36 1sdd_B Coagulation factor V; c 100.0 5.9E-38 2E-42 354.1 21.0 226 96-361 63-310 (647)
37 2dv6_A Nitrite reductase; elec 100.0 5.2E-35 1.8E-39 316.6 26.7 264 65-387 164-434 (447)
38 2r7e_A Coagulation factor VIII 100.0 5.8E-33 2E-37 315.5 1.9 224 96-361 446-694 (742)
39 3gdc_A Multicopper oxidase; be 99.9 3.2E-27 1.1E-31 240.7 15.9 225 272-579 54-288 (288)
40 2zwn_A Two-domain type laccase 99.9 2.6E-25 9E-30 231.6 19.1 228 272-578 23-276 (339)
41 3g5w_A Multicopper oxidase typ 99.9 2.9E-25 1E-29 229.1 18.5 232 273-578 23-275 (318)
42 2bw4_A Copper-containing nitri 99.8 4.2E-19 1.4E-23 185.0 19.5 228 272-578 59-323 (340)
43 1sdd_B Coagulation factor V; c 99.8 4.5E-19 1.6E-23 200.0 16.1 224 279-578 65-326 (647)
44 1kbv_A ANIA, major outer membr 99.8 2.5E-18 8.7E-23 178.0 18.0 220 273-578 59-306 (327)
45 1mzy_A Copper-containing nitri 99.8 1.4E-17 4.8E-22 172.9 18.6 229 272-578 52-317 (333)
46 2zoo_A Probable nitrite reduct 99.7 4.1E-17 1.4E-21 175.9 19.4 220 273-578 49-296 (442)
47 1oe1_A Dissimilatory copper-co 99.6 7.6E-15 2.6E-19 152.5 17.9 228 273-578 54-317 (336)
48 3cvb_A Plastocyanin; cupredoxi 99.5 8.7E-15 3E-19 125.5 5.6 88 97-219 14-105 (105)
49 3kw8_A Laccase, putative coppe 99.3 3.6E-12 1.2E-16 128.6 11.2 99 95-221 159-267 (276)
50 2xu9_A Laccase; oxidoreductase 99.3 7.2E-11 2.5E-15 126.9 18.6 213 95-359 182-421 (439)
51 2uxt_A Protein SUFI, SUFI; oxi 99.2 4.5E-10 1.5E-14 121.0 17.6 204 95-352 187-413 (451)
52 1hfu_A Laccase 1; oxidoreducta 99.2 7.2E-10 2.5E-14 121.1 18.8 228 101-359 184-451 (503)
53 1v10_A Laccase; multicopper bl 99.1 8.5E-10 2.9E-14 121.0 17.1 223 102-359 212-472 (521)
54 2cal_A Rusticyanin; iron respi 99.1 2.3E-10 8E-15 104.9 10.1 87 99-218 58-154 (154)
55 2aan_A Auracyanin A; cupredoxi 99.1 4.1E-11 1.4E-15 108.1 5.0 110 434-578 28-139 (139)
56 2ov0_A Amicyanin; beta-sandwic 99.1 1.8E-10 6.1E-15 98.7 8.3 74 101-218 32-105 (105)
57 1iby_A Nitrosocyanin; RED copp 99.1 3.3E-10 1.1E-14 98.1 9.9 84 88-219 29-112 (112)
58 1fwx_A Nitrous oxide reductase 99.1 7.8E-11 2.7E-15 129.1 7.3 109 67-219 483-592 (595)
59 3cg8_A Laccase; oxidoreductase 99.0 7.5E-10 2.6E-14 115.0 9.9 99 95-221 200-308 (343)
60 1aoz_A Ascorbate oxidase; oxid 99.0 5.1E-08 1.7E-12 107.7 22.8 218 273-565 23-284 (552)
61 3t6v_A Laccase; beta barrel, o 98.9 1.8E-08 6.1E-13 109.5 17.1 230 100-359 187-452 (495)
62 3cvb_A Plastocyanin; cupredoxi 98.9 2.9E-09 1E-13 90.7 7.2 86 441-578 18-104 (105)
63 2gim_A Plastocyanin; beta shee 98.9 6.1E-09 2.1E-13 89.0 8.7 85 101-218 19-105 (106)
64 1zpu_A Iron transport multicop 98.8 2.5E-07 8.7E-12 101.5 22.3 213 96-359 173-462 (534)
65 3pxl_A Laccase; 4-copper prote 98.8 5.8E-08 2E-12 105.6 16.6 229 100-359 184-452 (499)
66 2q9o_A Laccase-1; multicopper 98.8 2.9E-07 1E-11 101.6 21.8 222 101-359 214-502 (559)
67 3zx1_A Oxidoreductase, putativ 98.8 2.4E-07 8.2E-12 100.2 20.1 216 95-358 216-461 (481)
68 3aw5_A Multicopper oxidase; be 98.8 1.1E-07 3.7E-12 102.2 16.5 199 95-349 174-419 (448)
69 3sqr_A Laccase; multicopper ox 98.7 7.9E-07 2.7E-11 98.1 22.4 224 229-539 63-318 (580)
70 2aan_A Auracyanin A; cupredoxi 98.7 4.1E-08 1.4E-12 88.3 9.4 87 101-218 34-139 (139)
71 2g23_A PHS, phenoxazinone synt 98.6 1.6E-06 5.6E-11 96.1 20.8 83 274-359 460-572 (612)
72 1sdd_A Coagulation factor V; c 98.6 4.5E-09 1.5E-13 107.4 -0.1 94 95-220 206-301 (306)
73 3od3_A Blue copper oxidase CUE 98.6 9.8E-07 3.3E-11 95.4 17.9 78 273-352 378-462 (488)
74 2plt_A Plastocyanin; electron 98.6 5.9E-08 2E-12 81.5 6.6 80 441-577 17-97 (98)
75 2gim_A Plastocyanin; beta shee 98.6 6.1E-08 2.1E-12 82.7 6.0 85 441-578 19-105 (106)
76 4hci_A Cupredoxin 1; structura 98.6 1E-07 3.6E-12 80.5 6.9 74 101-218 27-100 (100)
77 1qhq_A Protein (auracyanin); e 98.5 9.5E-08 3.2E-12 85.9 6.6 106 437-578 29-139 (140)
78 3t9w_A Small laccase, multi-co 98.5 3.4E-07 1.2E-11 93.0 11.5 93 101-221 189-289 (299)
79 1pcs_A Plastocyanin; electron 98.5 9.8E-08 3.4E-12 80.2 6.1 78 441-577 18-97 (98)
80 2plt_A Plastocyanin; electron 98.5 1.1E-07 3.8E-12 79.8 6.4 82 101-218 17-98 (98)
81 3tas_A Small laccase, multi-co 98.5 4.4E-07 1.5E-11 92.9 11.8 94 100-221 172-273 (313)
82 2wsd_A Spore coat protein A; o 98.5 1.9E-06 6.4E-11 94.2 17.3 220 95-359 235-491 (513)
83 1qhq_A Protein (auracyanin); e 98.5 4.2E-07 1.4E-11 81.7 10.0 88 101-218 32-139 (140)
84 3c75_A Amicyanin; copper prote 98.5 4.5E-07 1.5E-11 80.7 9.5 74 101-218 59-132 (132)
85 3abg_A Bilirubin oxidase; clea 98.5 1.4E-06 4.7E-11 95.6 15.4 217 96-359 207-456 (534)
86 2r7e_B Coagulation factor VIII 98.4 7.4E-08 2.5E-12 109.8 3.8 79 272-359 354-437 (770)
87 3ef4_A Pseudoazurin, blue copp 98.4 4.2E-07 1.4E-11 79.7 7.6 77 101-221 21-97 (124)
88 1pcs_A Plastocyanin; electron 98.4 2.2E-07 7.5E-12 78.0 5.6 80 101-218 18-98 (98)
89 1bxv_A Plastocyanin; copper pr 98.4 6.2E-07 2.1E-11 74.0 8.1 74 101-218 18-91 (91)
90 1b3i_A PETE protein, protein ( 98.4 4.3E-07 1.5E-11 76.0 5.9 80 101-218 18-97 (97)
91 3tu6_A Pseudoazurin (blue copp 98.3 8.2E-07 2.8E-11 78.3 7.6 77 101-221 22-98 (127)
92 3erx_A Pseudoazurin; copper pr 98.3 1E-06 3.5E-11 77.3 7.9 75 101-219 20-94 (123)
93 1kdj_A Plastocyanin; electron 98.3 9.6E-07 3.3E-11 74.6 7.6 80 101-218 16-102 (102)
94 1b3i_A PETE protein, protein ( 98.3 4.5E-07 1.5E-11 75.9 5.4 77 441-577 18-96 (97)
95 1bxv_A Plastocyanin; copper pr 98.3 1.2E-06 4E-11 72.3 7.1 72 441-577 18-90 (91)
96 1byp_A Protein (plastocyanin); 98.3 9.1E-07 3.1E-11 74.3 5.9 82 441-577 16-98 (99)
97 1byp_A Protein (plastocyanin); 98.2 4.1E-06 1.4E-10 70.3 8.9 80 101-218 16-99 (99)
98 1plc_A Plastocyanin; electron 98.2 4.7E-06 1.6E-10 69.9 8.9 80 101-218 16-99 (99)
99 1kdj_A Plastocyanin; electron 98.1 3.7E-06 1.3E-10 70.9 5.5 84 441-577 16-101 (102)
100 1iuz_A Plastocyanin; electron 98.1 1.4E-05 4.7E-10 67.0 8.9 80 101-218 17-98 (98)
101 1iby_A Nitrosocyanin; RED copp 98.0 1.6E-05 5.6E-10 68.2 8.1 76 440-579 36-112 (112)
102 4hci_A Cupredoxin 1; structura 98.0 1.7E-05 6E-10 66.6 7.7 79 433-577 20-99 (100)
103 1paz_A Pseudoazurin precursor; 98.0 2.1E-05 7.2E-10 68.9 8.4 38 171-220 58-95 (123)
104 3gyr_A PHS, phenoxazinone synt 97.9 0.00056 1.9E-08 76.1 21.8 83 273-358 459-571 (612)
105 1plc_A Plastocyanin; electron 97.9 1.2E-05 4E-10 67.4 6.1 82 440-577 15-98 (99)
106 1id2_A Amicyanin; beta barrel, 97.9 3.6E-05 1.2E-09 65.5 8.4 73 102-218 34-106 (106)
107 1pmy_A Pseudoazurin; electron 97.9 2.4E-05 8.2E-10 68.5 7.3 38 171-220 58-95 (123)
108 1cuo_A Protein (azurin ISO-2); 97.8 3.4E-05 1.2E-09 68.1 6.7 42 170-219 86-129 (129)
109 3ay2_A Lipid modified azurin p 97.7 3E-05 1E-09 71.3 5.0 42 170-219 125-167 (167)
110 2ux6_A Pseudoazurin; type-1 co 97.6 0.00012 4.1E-09 63.9 7.1 73 101-219 20-92 (122)
111 2ccw_A Azurin II, AZN-2; elect 97.5 0.00022 7.6E-09 62.8 7.8 41 170-218 86-128 (129)
112 2ov0_A Amicyanin; beta-sandwic 97.5 0.00017 5.9E-09 61.1 6.3 76 436-577 28-104 (105)
113 1nwp_A Azurin; electron transp 97.3 0.00091 3.1E-08 58.7 9.2 41 170-218 86-128 (128)
114 3sbq_A Nitrous-oxide reductase 97.3 0.00071 2.4E-08 73.0 9.4 80 101-218 557-636 (638)
115 2iaa_C Azurin; quinoprotein, t 97.2 0.0011 3.7E-08 58.2 9.0 41 170-218 85-127 (128)
116 2cal_A Rusticyanin; iron respi 97.0 0.0012 4E-08 60.0 7.3 97 431-577 53-153 (154)
117 1fwx_A Nitrous oxide reductase 96.9 0.0022 7.5E-08 70.4 9.8 81 431-578 504-591 (595)
118 1iuz_A Plastocyanin; electron 96.4 0.007 2.4E-07 50.2 7.0 81 440-577 16-97 (98)
119 1id2_A Amicyanin; beta barrel, 96.2 0.0083 2.8E-07 50.6 6.3 78 434-577 27-105 (106)
120 3s8f_B Cytochrome C oxidase su 96.0 0.23 7.9E-06 45.4 15.3 75 102-219 93-168 (168)
121 3c75_A Amicyanin; copper prote 96.0 0.011 3.7E-07 52.1 6.3 77 435-577 54-131 (132)
122 3tu6_A Pseudoazurin (blue copp 95.8 0.0058 2E-07 53.5 3.9 34 527-578 61-95 (127)
123 2cua_A Protein (CUA); CUA cent 95.7 0.04 1.4E-06 48.6 8.9 74 103-218 61-134 (135)
124 3ef4_A Pseudoazurin, blue copp 95.7 0.0088 3E-07 52.1 4.4 35 526-578 59-94 (124)
125 3erx_A Pseudoazurin; copper pr 95.5 0.013 4.6E-07 50.8 5.0 35 526-578 58-93 (123)
126 3fsa_A Azurin; copper, cupredo 95.2 0.082 2.8E-06 45.8 8.7 38 170-218 86-125 (125)
127 1paz_A Pseudoazurin precursor; 93.9 0.075 2.6E-06 46.1 5.6 34 527-578 59-93 (123)
128 1pmy_A Pseudoazurin; electron 93.5 0.078 2.7E-06 45.9 4.9 35 526-578 58-93 (123)
129 3sbq_A Nitrous-oxide reductase 91.2 0.56 1.9E-05 50.8 8.9 76 440-578 556-636 (638)
130 2cua_A Protein (CUA); CUA cent 90.5 0.85 2.9E-05 40.0 8.1 73 441-579 59-135 (135)
131 3ay2_A Lipid modified azurin p 89.7 0.82 2.8E-05 41.6 7.5 45 522-579 122-167 (167)
132 2ux6_A Pseudoazurin; type-1 co 89.6 0.31 1.1E-05 42.0 4.4 32 527-578 59-91 (122)
133 1cuo_A Protein (azurin ISO-2); 85.4 2.5 8.6E-05 36.6 7.7 46 522-579 83-129 (129)
134 2iaa_C Azurin; quinoprotein, t 84.7 1.8 6E-05 37.5 6.3 46 522-579 82-128 (128)
135 2pq4_B Periplasmic nitrate red 82.6 0.89 3E-05 30.0 2.7 19 4-22 3-21 (35)
136 2ccw_A Azurin II, AZN-2; elect 81.8 3 0.0001 36.1 6.7 46 522-579 83-129 (129)
137 1nwp_A Azurin; electron transp 81.0 3.2 0.00011 35.9 6.5 44 522-577 83-127 (128)
138 3fsa_A Azurin; copper, cupredo 76.9 9.6 0.00033 32.7 8.1 105 440-577 16-124 (125)
139 3isy_A Bsupi, intracellular pr 76.9 18 0.00062 30.7 9.8 84 277-361 3-100 (120)
140 3s8f_B Cytochrome C oxidase su 74.1 12 0.0004 34.0 8.4 74 441-578 92-167 (168)
141 1q90_R Cytochrome B6-F complex 73.8 2.7 9.1E-05 29.9 3.1 20 3-22 8-27 (49)
142 4aay_B AROB; oxidoreductase, r 58.8 2.2 7.5E-05 39.1 0.3 21 1-21 7-27 (175)
143 2r39_A FIXG-related protein; s 47.6 44 0.0015 27.9 6.8 48 290-349 33-82 (118)
144 1yew_A Particulate methane mon 47.0 2.4E+02 0.0082 28.4 12.8 16 169-187 320-335 (382)
145 1cyx_A CYOA; electron transpor 40.2 23 0.00078 33.1 4.0 77 102-220 41-118 (205)
146 3isy_A Bsupi, intracellular pr 35.7 1.4E+02 0.0048 25.2 7.9 29 170-199 73-101 (120)
147 2qjy_C Ubiquinol-cytochrome C 31.7 24 0.00082 32.4 2.7 21 3-23 8-28 (187)
148 3cx5_E Cytochrome B-C1 complex 26.8 36 0.0012 31.1 3.0 18 3-20 19-36 (185)
149 1iz6_A Initiation factor 5A; S 24.8 1.4E+02 0.0047 25.8 6.1 48 271-318 14-69 (138)
150 2eif_A IF-5A, protein (eukaryo 21.8 2.2E+02 0.0074 24.4 6.8 48 271-318 18-73 (136)
No 1
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=100.00 E-value=1.6e-95 Score=801.99 Aligned_cols=502 Identities=40% Similarity=0.745 Sum_probs=404.4
Q ss_pred CCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEE
Q 008071 37 QLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTW 116 (579)
Q Consensus 37 ~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~ 116 (579)
.|++|+++||+||++++.... .|. .+|+|++++.+++++++++.+++|+|| |++|||||||++||+|+|+|
T Consensus 2 ~~~~~~~~L~~p~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~N-----G~~PGPtI~~~~Gd~v~v~v 72 (513)
T 2wsd_A 2 TLEKFVDALPIPDTLKPVQQS-KEK---TYYEVTMEECTHQLHRDLPPTRLWGYN-----GLFPGPTIEVKRNENVYVKW 72 (513)
T ss_dssp CCCSSCSBCCCCCBCCCSEEC-SSC---EEEEEEEEEEEECSSTTSCCEEEEEET-----TBSSCCBEEEETTCCEEEEE
T ss_pred CcCcccccCCCCccccccccC-CCc---eEEEEEEEEeeeeeCCCCCCceEEEEC-----CCccCceEEECCCCEEEEEE
Confidence 578999999999999875433 332 358999999999999998889999997 99999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCC-CCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeee
Q 008071 117 QNHLPSKHILPWDPTIPTAIP-RKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWY 195 (579)
Q Consensus 117 ~N~l~~~~~~~~d~~~~~~~p-~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wY 195 (579)
+|+|+..+.++.+.+++++.- .....++|+|||||+++++.+||+|+.+++||+|+||++|++++|+|++++++|||||
T Consensus 73 ~N~L~~~~~~~~~~t~~~~~~~~~~~~~~tsiHwHGl~~~~~~DG~p~~~i~~g~i~pG~~f~~~~Y~f~~~~~~GT~wY 152 (513)
T 2wsd_A 73 MNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWY 152 (513)
T ss_dssp EECCCSSCSSCCCTTSCC-----CCCSCCBCEEEETCCCCGGGSCCTTSCBCGGGSSBCTTCCCSEEEECCCSCCEEEEE
T ss_pred EeCCCccccCccccccccccccccCCCCCcEEEcCCCcCCCccCCCCcccccCCcccCCCccceEEEEEecCCCccceEE
Confidence 999998888888888775421 1234569999999999999999999988999999999665555999999889999999
Q ss_pred ecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCC--CCC-CCCCCCCCCC
Q 008071 196 HDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNN--PSI-HPQWQPEYFG 272 (579)
Q Consensus 196 H~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~--~~~-~~~~~~~~~g 272 (579)
|||.++.+++|+++||+|+|||++++ +.++.+|+. ++|++|+|+||+++.++++.+...... +.. .+.|..++.+
T Consensus 153 H~H~~~~t~~q~~~Gl~G~liV~~~~-~~~~~lp~~-d~d~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (513)
T 2wsd_A 153 HDHAMALTRLNVYAGLVGAYIIHDPK-EKRLKLPSD-EYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230 (513)
T ss_dssp EECCTTTHHHHHHHTCEEEEEEECGG-GGGGCCCCG-GGEEEEEEEEEEECTTSCEECCSSCSSCCTTSCSSCCCSCCCC
T ss_pred CCCCCCcchhhhhccCeEEEEEeccc-cccccCCCC-CCcEEEEEEeeecCCCCceeccccccccccccccccccccccc
Confidence 99999999999999999999999776 556677875 899999999999999999876532111 110 2345567789
Q ss_pred cEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCC-eEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCC
Q 008071 273 DAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGL-RFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSES 351 (579)
Q Consensus 273 d~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~-~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~ 351 (579)
+.++|||+.+|+++|++++|||||||+|+++.+.|+| +|| +|+||++||+++++|+.+++|.|+|||||||+|++++.
T Consensus 231 d~~liNG~~~p~~~v~~~~~RlRliNa~~~~~~~~~i-~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~ 309 (513)
T 2wsd_A 231 ETILVNGKVWPYLEVEPRKYRFRVINASNTRTYNLSL-DNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAY 309 (513)
T ss_dssp SEEEETTEESCEEECCSSEEEEEEEECCSSCCEEEEE-TTCCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECGGG
T ss_pred ceEEECCcccceEEecCCEEEEEEEccCCcceEEEEE-CCCCeEEEEccCCCcccCceEeCeEEECCeeeEEEEEECCCC
Confidence 9999999999999999999999999999999999999 488 99999999999989999999999999999999999987
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCCCcce
Q 008071 352 KSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNH-ELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTH 430 (579)
Q Consensus 352 ~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~-~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~ 430 (579)
+|..+.|.+.... .+.........||+|++.+.. ..+...+|..|.+++..+......+|.+.|...+...+. ..
T Consensus 310 ~g~~~~l~~~~~~---~~~~~~~~~~~il~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 385 (513)
T 2wsd_A 310 EGESIILANSAGC---GGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDEYGR-PV 385 (513)
T ss_dssp TTCEEEEEECCCS---SSSCCTTTTTEEEEEECCSCCSSCCCCCCCSBCSCCGGGCCCCEEEEEEEEEEEEECTTSC-EE
T ss_pred CCcEEEEEecccc---cccCCCCCCcceEEEEeccCcccCccCCCCccccCCCCcccCCCcceEEEEEEeecCCCCC-ce
Confidence 7777888775421 111111234589999876532 234455777776544433334455677877665433332 35
Q ss_pred EEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcc
Q 008071 431 LFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKK 510 (579)
Q Consensus 431 ~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~ 510 (579)
|+|||+.|.++..+.++.|++|+|+|.|.+.+.||||||||+||||+++.+ +...|+..- .. . ..|.+
T Consensus 386 ~~iNg~~~~~~~~~~~~~g~~~~w~l~N~~~~~HP~HlHG~~F~Vl~~~~~-~~~~~~~~~-~~---------~-~~~~~ 453 (513)
T 2wsd_A 386 LLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPF-DIARYQESG-EL---------S-YTGPA 453 (513)
T ss_dssp EEETTBCTTSCCCBCCBTTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEB-CHHHHHHHC-CC---------C-BSSCC
T ss_pred EeECCccCCCcccEecCCCCEEEEEEEcCCCCCcCEeEeCceEEEEEecCc-ccccccccc-cc---------c-ccCCC
Confidence 889999999888889999999999999999899999999999999999753 223343210 00 0 01333
Q ss_pred cccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 511 LEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 511 ~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.++..++++|||||.|+|+++++|++||+ +||| |||||||++|||.|||++|+|..
T Consensus 454 ~~~~~~~~~~rDTv~v~pg~~~~i~~~f~-------------dnpG~w~~HCHil~H~~~GMm~~~~V~~ 510 (513)
T 2wsd_A 454 VPPPPSEKGWKDTIQAHAGEVLRIAATFG-------------PYSGRYVWHCHALEHEDYDMMRPMDITD 510 (513)
T ss_dssp BCCCGGGSSCBSEEEECTTEEEEEEEECC-------------SCCEEEEEEESCHHHHTTTCEEEEEEBC
T ss_pred CCCCccccCcccEEEeCCCCEEEEEEEec-------------CCCCCEEEEcCChhhhhcCCceeEEEeC
Confidence 34556778999999999999999999996 3889 99999999999999999999963
No 2
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=100.00 E-value=5.1e-94 Score=797.20 Aligned_cols=506 Identities=29% Similarity=0.498 Sum_probs=389.0
Q ss_pred ccCCCCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCE
Q 008071 32 LINPSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGID 111 (579)
Q Consensus 32 ~~~~~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~ 111 (579)
.+++..|++|+++||+||++++... .+ ..+|+|++++.+++|+++++.+++|+|| |++|||||+|++||+
T Consensus 5 ~~~~~~l~~f~~~L~iPp~~~~~~~--~~---~~~~~l~~~~~~~~l~~~~~~t~~~~yn-----G~~PGPtI~~~~Gd~ 74 (612)
T 2g23_A 5 APAPGELTPFAAPLTVPPVLRPASD--EV---TRETEIALRPTWVRLHPQLPPTLMWGYD-----GQVPGPTIEVRRGQR 74 (612)
T ss_dssp --CTTCCCTTCSBCCCCCEECCCCS--CT---TBCEEEEEEEEEECSCTTSCCEEEEEET-----TBSSCCEEEEETTCC
T ss_pred CCCCCCCCccccCCCCCCcccCcCC--CC---eEEEEEEEEEEEEEECCCCcceEEEEEC-----CccCCceEEEECCeE
Confidence 4467789999999999999987431 22 2589999999999999999899999997 999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCCC----------CCCCCCCCC----------CCCCeEEeeCCCCCCCCCCCCCCcccccccc
Q 008071 112 TYVTWQNHLPSKHILPWDPT----------IPTAIPRKK----------KGIPTVVHLHGGIDEPESDGNANSWFTAGFK 171 (579)
Q Consensus 112 v~v~~~N~l~~~~~~~~d~~----------~~~~~p~~~----------~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i 171 (579)
|+|+|+|+|+..+.++++.. ...+.|... ...+|++||||+++++.+||+| +|+|
T Consensus 75 v~V~~~N~L~~~~~~~~~~~~~p~~~~g~p~~~~~p~~~g~~~~~~~~~~~~~tsiH~HG~~~~~~~DG~p-----~~~i 149 (612)
T 2g23_A 75 VRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGGGNDGWA-----DNAV 149 (612)
T ss_dssp EEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGSCSCTTCCCCHHHHTCCCCBCEEEETCCCCTTTSCCG-----GGCB
T ss_pred eeEEEEECcCCcccccccccccccccCCCcccccccccccccccccccccCCceEEEcCCCCCCCccCCCC-----cCCC
Confidence 99999999998655443321 111112111 1125999999999999999986 5679
Q ss_pred CCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCc-
Q 008071 172 EKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGS- 250 (579)
Q Consensus 172 ~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~- 250 (579)
.||++| +|+|++.|++||||||||.++.++.|+++||+|+|||++++ +..+.||+. ++|++|+|+||+++.+++
T Consensus 150 ~PG~s~---~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~-~~~~~lp~~-d~d~~l~l~Dw~~~~~~~~ 224 (612)
T 2g23_A 150 GFGDAQ---LSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDE-EDALGLPSG-DREIPLLIADRNLDTDEDG 224 (612)
T ss_dssp CTTCEE---EEEECCCSCSCEEEEEECCTTTHHHHTTTTCEEEEEEECHH-HHTTTCCCG-GGEEEEEEEEECEEECTTS
T ss_pred CCCCeE---EEEEEecCCCceEEEecccCCcchhhhhccceeEEEEcCcc-cccccCCCC-cceEEEEEEEEeccCCccc
Confidence 999999 99999988999999999999999999999999999999776 556778875 999999999999987642
Q ss_pred -----EEecC---CCCCCC-CCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCC-------e
Q 008071 251 -----IYMNS---TGNNPS-IHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGL-------R 314 (579)
Q Consensus 251 -----~~~~~---~g~~~~-~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~-------~ 314 (579)
+.|.. ....+. ..+. ..++.+|.++|||+.+|+++|++++|||||||+|+++.|.|+|+ +| +
T Consensus 225 ~~~~~l~~~~~~~~~~~~~~g~p~-~~~~~gd~~lVNG~~~p~~~V~~g~yRlRliNas~~r~~~l~i~-~h~g~~~~~~ 302 (612)
T 2g23_A 225 RLNGRLLHKTVIVQQSNPETGKPV-SIPFFGPYTTVNGRIWPYADVDDGWYRLRLVNASNARIYNLVLI-DEDDRPVPGV 302 (612)
T ss_dssp CEEEEEEEEEEEEESSCSSSSCCE-ECCCCCSEEEETTEESCEEEEESSEEEEEEEECCSSCCEEEEEE-CTTSCBCTTS
T ss_pred ccccccccccccccccccccCccc-ccCCcCCEEEECCccCCeEEecCCeEEEEEEecCCCeEEEEEEc-CCCCccCCCc
Confidence 22211 000000 0111 12467999999999999999999999999999999999999995 77 8
Q ss_pred EEEEecCCCccCccEEec------EEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCC-C-CCCCCccEEEEEec
Q 008071 315 FIHVAADSAYLGRPVVTN------ETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDP-V-NDANGKVMKFIIKK 386 (579)
Q Consensus 315 f~via~DG~~l~~p~~~~------~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~-~-~~~~~~v~~~~v~~ 386 (579)
|+|||+||++|++|+.++ +|.|+|||||||||+|++..|+++.|+|......+.... . ......||+|+|..
T Consensus 303 ~~vIa~DG~~l~~P~~~~~~~~~~~l~l~pgeR~dvlVd~~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~ 382 (612)
T 2g23_A 303 VHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRE 382 (612)
T ss_dssp EEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEECTTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEEC
T ss_pred EEEEEeCCeEccCCEEecccCcccEEEECCcCeEEEEEECCCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEcc
Confidence 999999999998899999 999999999999999999888899999976432221111 1 11234799999988
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCccceEEEE-----------------Eeee----------------cCCCCcceEE
Q 008071 387 NHELDTWRVPEKLIK-YPSPNPSSASRTRYIAM-----------------YEYT----------------SDIDEPTHLF 432 (579)
Q Consensus 387 ~~~~~~~~~P~~L~~-~~~~~~~~~~~~r~~~l-----------------~~~~----------------~~~g~~~~~~ 432 (579)
....+++.+|+.|.+ ++.++.......|.+.+ .+.. ...|....|+
T Consensus 383 ~~~~~~~~~P~~L~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 462 (612)
T 2g23_A 383 TCEEDSFALPEVLSGSFRRMSHDIPHGHRLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYR 462 (612)
T ss_dssp CSCCCCCCCCSSCCSSCCCCCTTSCCEEEEEEECCTTCTTSTTCCCEEEEEEEC-----CCSCTTEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCChhhccccccCCcccccceeEEeeccccccccccccceeeccccccccccccccccceeeeccCCceeEEE
Confidence 765566779998875 33332211111233332 1110 0123334689
Q ss_pred EcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccc
Q 008071 433 INGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512 (579)
Q Consensus 433 iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~ 512 (579)
|||+.|++...+.+++|++|+|+|+|.+.+.|||||||++|||++++.+ +.+.|+.++.+.. ....|..|...+
T Consensus 463 iNG~~~~~~~~~~v~~G~~v~w~l~N~~~~~HPiHlHg~~F~Vl~r~~~-~~~~~~~~~~g~~-----~~~~~~~g~~~~ 536 (612)
T 2g23_A 463 RTAATFNDGLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAY-DASGFDLALGGTR-----TPVRLDPDTPVP 536 (612)
T ss_dssp EEECSTTSCCCEEEETTCEEEEEEEECSSSCEEEEESSCCEEEEEEEEE-ECTTEETTTTEES-----SCEEEEEEEECC
T ss_pred ECCccCCCCCceEecCCCEEEEEEEeCCCCCCCeEEcCceEEEecccCc-ccccccccccCcc-----cccccccccccC
Confidence 9999999989999999999999999999999999999999999998643 2233332221110 111222243345
Q ss_pred cccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 513 ~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+++++++|||||.|+||++++|+++|+ ++|| ||||||||+|||+|||++|+|.
T Consensus 537 ~~~~e~~~kDTv~v~Pg~~~~i~~~~~-------------~~pG~w~~HCHil~Hed~GMm~~f~V~ 590 (612)
T 2g23_A 537 LAPNELGHKDVFQVPGPQGLRVMGKFD-------------GAYGRFMYHCHLLEHEDMGMMRPFVVM 590 (612)
T ss_dssp CCTTSSSCBSEEEECSSEEEEEEEECC-------------SCCEEEEEEESSHHHHTTTCEEEEEEE
T ss_pred CCcccccccCeEEECCCcEEEEEEEeC-------------CCCccEEEEeCchhHhhcCCceEEEEC
Confidence 667889999999999999999988876 2788 9999999999999999999986
No 3
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=100.00 E-value=7.4e-93 Score=799.57 Aligned_cols=506 Identities=30% Similarity=0.495 Sum_probs=378.6
Q ss_pred cCCCCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEE
Q 008071 33 INPSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDT 112 (579)
Q Consensus 33 ~~~~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v 112 (579)
.++..+++|+++||+||++++.... + ...|+|++++.+++++++++.|++|+|| |++|||||||++||+|
T Consensus 6 p~p~~~~~f~~pl~~pp~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~~~t~~~gyN-----g~~PGPti~~~~Gd~v 75 (612)
T 3gyr_A 6 PAPGELTPFAAPLTVPPVLRPASDE--V---TRETEIALRPTWVRLHPQLPPTLMWGYD-----GQVPGPTIEVRRGQRV 75 (612)
T ss_dssp -CTTCCCTTCSBCCCCCEECCCCSC--T---TBCEEEEEEEEEECSCTTSCCEEEEEET-----TBSSCCEEEEETTCCE
T ss_pred CCCCCCCcccccCCCCCccCCccCC--C---cceEEEEEEEEEEeecCCCCcceEEEEC-----CcccCcEEEEeCCcEE
Confidence 3456789999999999998764321 2 2479999999999999999899999997 9999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCC----CCCCCC------C----------CCCCCCeEEeeCCCCCCCCCCCCCCccccccccC
Q 008071 113 YVTWQNHLPSKHILPWDPT----IPTAIP------R----------KKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKE 172 (579)
Q Consensus 113 ~v~~~N~l~~~~~~~~d~~----~~~~~p------~----------~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~ 172 (579)
+|+|+|+|++.+.+.+..- ..+..+ . ....+.|+|||||+++++.+||+| ||+|.
T Consensus 76 ~v~~~N~L~~~~~~h~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttiHwHGl~~~~~~DGv~-----q~~I~ 150 (612)
T 3gyr_A 76 RIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGGGNDGWA-----DNAVG 150 (612)
T ss_dssp EEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGSCSCTTCCCCHHHHTCCCCBCEEEETCCCCTTTSCCG-----GGCBC
T ss_pred EEEEEECCCCCcccccccccccCCCCCCccccccccccccccccccccCCCCceEEcCCCccCCcccCcc-----cCccC
Confidence 9999999998644321110 000000 0 134567999999999999999965 78999
Q ss_pred CCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEE
Q 008071 173 KGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIY 252 (579)
Q Consensus 173 PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~ 252 (579)
||++| +|+|+++|++||||||+|.++.+++|+++||+|+|||+|++ +..+.+|.+ ++|++|+|+||+|+.+++..
T Consensus 151 PG~~~---~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~Gl~G~liI~d~~-~~~~~~p~~-d~e~~lvl~Dw~~~~~~~~~ 225 (612)
T 3gyr_A 151 FGDAQ---LSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDE-EDALGLPSG-DREIPLLIADRNLDTDEDGR 225 (612)
T ss_dssp TTCEE---EEEECCCSCSEEEEEEECCTTTHHHHTTTTCEEEEEEECHH-HHTTTCCCG-GGEEEEEEEEECEEECTTSC
T ss_pred CCCCE---EEEEEcCCCCceEEEeeCCCCcchhhhhccceeEEEEcCcc-ccccCCCCC-CccEEEEEEEEecccccccc
Confidence 99999 99999998899999999999999999999999999999877 556777876 89999999999998776532
Q ss_pred ecC---------CCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCC-------eEE
Q 008071 253 MNS---------TGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGL-------RFI 316 (579)
Q Consensus 253 ~~~---------~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~-------~f~ 316 (579)
+.. ....+.....+..++.|+.++|||+.+|++.+++++|||||||+|+++.|+|+|+ +| +|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~vNG~~~p~~~v~~~~yRlRliNas~~~~~~l~i~-~h~~~~~~~~~~ 304 (612)
T 3gyr_A 226 LNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIWPYADVDDGWYRLRLVNASNARIYNLVLI-DEDDRPVPGVVH 304 (612)
T ss_dssp EEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEESCEEEEESSEEEEEEEECCSSCCEEEEEE-CTTSCBCTTSEE
T ss_pred cccccccCCccccccCCCCCCccccCccCceeeecCCccceEeccCcEEEEEEEeccCCcceeEEEc-cCCCccCCceEE
Confidence 210 0111111122234678999999999999999999999999999999999999995 65 599
Q ss_pred EEecCCCccCccEEec------EEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCC---CCCCCCccEEEEEecC
Q 008071 317 HVAADSAYLGRPVVTN------ETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDP---VNDANGKVMKFIIKKN 387 (579)
Q Consensus 317 via~DG~~l~~p~~~~------~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~---~~~~~~~v~~~~v~~~ 387 (579)
|||+||++|++|+.++ +|.|+|||||||||++++.++..+.+.+...... .+.. .......++++.+...
T Consensus 305 vIa~DG~~l~~Pv~v~~p~~~~~l~i~pGeRydVlV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 383 (612)
T 3gyr_A 305 QIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDFRALGGRRLRLVDKGPGAP-AGTPDPLGGVRYPEVMEFRVRET 383 (612)
T ss_dssp EEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEECTTCTTCEEEEEECCTTSC-TTSCBGGGTBSCCEEEEEEEECC
T ss_pred EEEeCCCccccceeccCcccccEEEeccceEEEEEEECCCCCceEEEEEecCCcCC-cCccCccccccccceeeecccCC
Confidence 9999999998887764 7999999999999999999888888887653211 1111 1123457889988776
Q ss_pred CCCCCCCCCCCCCCCCCCCCC------------------CCccceEEEEEee----------------ecCCCCcceEEE
Q 008071 388 HELDTWRVPEKLIKYPSPNPS------------------SASRTRYIAMYEY----------------TSDIDEPTHLFI 433 (579)
Q Consensus 388 ~~~~~~~~P~~L~~~~~~~~~------------------~~~~~r~~~l~~~----------------~~~~g~~~~~~i 433 (579)
...+...+|..+......... .......+.+... ....+....|.+
T Consensus 384 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (612)
T 3gyr_A 384 CEEDSFALPEVLSGSFRRMSHDIPHGHRLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRR 463 (612)
T ss_dssp SCCCCCCCCSSCCSSCCCCCTTSCCEEEEEEEECTTCTTTTTCCEEEEEEECC-----CCSCTTEEEEECTTSCEEEEEE
T ss_pred CCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccCCCccccccc
Confidence 555555566544322110000 0000111111110 001233456889
Q ss_pred cCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCccccc
Q 008071 434 NGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEV 513 (579)
Q Consensus 434 Ng~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~ 513 (579)
|++.|++...+.+++|++|+|+|+|.+.+.||||||||+||||+++.. +...++......++.. .+......++
T Consensus 464 n~~~~~~~~~~~~~~g~~~~w~i~N~~~~~HP~HLHG~~F~Vl~~~g~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 537 (612)
T 3gyr_A 464 TARTFNDGLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAY-DASGFDLALGGTRTPV-----RLDPDTPVPL 537 (612)
T ss_dssp EECSTTSCCCEEEETTCEEEEEEEECSSSCEEEEESSCEEEEEEEEEE-ECTTEETTTTEESSCE-----EEEEEEECCC
T ss_pred cCccCCCCcceEeCCCCEEEEEEEcCCCCCcCEeECCCcEEEEeecCC-cCcccccccccccccc-----ccccccccCc
Confidence 999999988999999999999999999999999999999999998643 1111111111111111 1111222356
Q ss_pred ccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 514 SEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 514 ~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
++++++|||||.|+++++++|++||. +||| ||||||||+|||+|||++|+|+.
T Consensus 538 ~~~~~~~kDTv~v~~~~~v~i~~rfa-------------dnpG~w~~HCHil~Hed~GMM~~f~V~~ 591 (612)
T 3gyr_A 538 APNELGHKDVFQVPGPQGLRVMGKFD-------------GAYGRFMYHCHLLEHEDMGMMRPFVVMP 591 (612)
T ss_dssp CTTCSSCBSEEEECSSEEEEEEEECC-------------SCCEEEEEEESSHHHHHTTCEEEEEEEC
T ss_pred ccccCCCCcEEEECCCCEEEEEEEeC-------------CCCcceEEcCCChHHHhCcCCcceEEeC
Confidence 67889999999999999999988875 5899 99999999999999999999973
No 4
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=100.00 E-value=2.5e-89 Score=753.64 Aligned_cols=454 Identities=31% Similarity=0.503 Sum_probs=365.9
Q ss_pred CCCCCccccccCCCCCccccccccC---CCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCC
Q 008071 34 NPSQLEMFVDELPDMPKIKCFEDAA---NGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGI 110 (579)
Q Consensus 34 ~~~~~~~~~~~lp~pp~~~~~~~~~---~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd 110 (579)
.++.+++|+++||+||++++..... .|+.+ .+|+|++++.++++.++...+.+|+|| |++|||+||+++||
T Consensus 4 ~~p~~~~~~~~lpip~~~~~~~~~~~p~~g~~~-~~~~l~~~~~~~~~~p~~~~~~~~~~N-----G~~PGPtI~~~~Gd 77 (534)
T 3abg_A 4 ISPQYPMFTVPLPIPPVKQPRLTVTNPVNGQEI-WYYEVEIKPFTHQVYPDLGSADLVGYD-----GMSPGPTFQVPRGV 77 (534)
T ss_dssp SCCCCCTTCSBCCCCCBCCCCCSCCSTTSSSCC-EEEEEEEECCEECCSTTTCCEECBEET-----SCSSEEEEEEETTC
T ss_pred cCCCccccCCCCCCCCccCccccccccCCCCce-EEEEEEEEEEEEEecCCCCceeEEEEC-----CcCcCceEEEeCCc
Confidence 3455689999999999998753211 34332 578999999888899888789999997 99999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCC
Q 008071 111 DTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQP 190 (579)
Q Consensus 111 ~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~ 190 (579)
+|+|+|+|+|+. +|+|||||+++++.+||++ +|+|.||++| +|+|+++|++
T Consensus 78 ~v~v~v~N~l~~---------------------~tsiHwHGl~~~~~~DG~~-----~~~i~PG~~~---~Y~f~~~~~~ 128 (534)
T 3abg_A 78 ETVVRFINNAEA---------------------PNSVHLHGSFSRAAFDGWA-----EDITEPGSFK---DYYYPNRQSA 128 (534)
T ss_dssp CEEEEEEECSSS---------------------CBCEEEETCCCCTTTTTCS-----SSCBSSCSCC---CEEECCCSSS
T ss_pred EEEEEEEECCCC---------------------CceEEECCCcCCCCCCCCC-----CCCCCCCCeE---EEEEecCCcc
Confidence 999999999998 8999999999999999976 4679999999 9999999889
Q ss_pred ceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCC
Q 008071 191 GNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPE 269 (579)
Q Consensus 191 Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~ 269 (579)
||||||||.++.++.|+++||+|+|||++++ +..+.+|+.+ ++|++|+|+||.++.+|++.+.. |. ..+
T Consensus 129 GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~-~~~~~lp~~~~~~d~~l~l~d~~~~~~g~~~~~~-~~--------~~~ 198 (534)
T 3abg_A 129 RTLWYHDHAMHITAENAYRGQAGLYMLTDPA-EDALNLPSGYGEFDIPMILTSKQYTANGNLVTTN-GE--------LNS 198 (534)
T ss_dssp CEEEEEECCTTCHHHHHHTBCEEEEEEECTT-TTTSCTTCCHHHHSCCEEEEEECBCSSSCBCCCT-TC--------SSC
T ss_pred eeEEEecCccccchhhhhhcceEEEEEECCc-ccccCCCccCCcceEEEEEeeeeecCCCceeccC-CC--------Ccc
Confidence 9999999999999999999999999999877 5567788743 78999999999999988875421 11 235
Q ss_pred CCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcC------CCeEEEEecCCCccCccEEecEEEeCcceEEE
Q 008071 270 YFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTN------GLRFIHVAADSAYLGRPVVTNETLLAPSEIAD 343 (579)
Q Consensus 270 ~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~------g~~f~via~DG~~l~~p~~~~~l~l~pgeR~d 343 (579)
+++|.++|||+.+|++.|++++|||||||+|+++.+.|+|.+ ||+|+||++||+++.+|+.+++|.|+||||||
T Consensus 199 ~~gd~~lvNG~~~p~~~v~~~~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa~DG~~~~~P~~~~~l~l~pgeR~d 278 (534)
T 3abg_A 199 FWGDVIHVNGQPWPFKNVEPRKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLLYISMAERYE 278 (534)
T ss_dssp CCCSEEEETTEESCBCBCCSSEEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEEETTEEEEEEEEESCEEECTTCEEE
T ss_pred ccCceeccCCccCceEEecCcEEEEEEEecCCcceEEEEEecccCcCCCccEEEEEeCCCcccCceEeceEEECCccEEE
Confidence 678999999999999999999999999999999999999953 39999999999988899999999999999999
Q ss_pred EEEEcCCCCCcEEEEecCCCCCCCCCC-CCCCCCCccEEEEEecCC-CCCCCCCCCCCCCCCCCCCCCCccceEEEEEee
Q 008071 344 VVIDFSESKSDVAILANDAPYPYPSGD-PVNDANGKVMKFIIKKNH-ELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEY 421 (579)
Q Consensus 344 vlv~~~~~~g~~~~l~~~~~~~~~~g~-~~~~~~~~v~~~~v~~~~-~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~ 421 (579)
|+|++++.+|++|+|++........+. ........||+|++.+.. ..+...+|..|.+++.+. .....+|.+.+...
T Consensus 279 vlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~P~~L~~~~~p~-~~~~~~~~~~~~~~ 357 (534)
T 3abg_A 279 VVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPDTSVVPANLRDVPFPS-PTTNTPRQFRFGRT 357 (534)
T ss_dssp EEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSCCCCCCCCCCCCSCCC-CCCCCCEEEECSCC
T ss_pred EEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCCCCCCccccccCCCCC-CccccceEEEEecc
Confidence 999999977778999885421100111 111234589999876643 234456777777654322 22234566654321
Q ss_pred ecCCCCcceEEEcCeecCC---CcccccCCCCeEEEEEEeCCC-CCceeeeeeccEEEEeEechhhhHHhhhhhhccCCc
Q 008071 422 TSDIDEPTHLFINGKSYEE---PVTETPKAGTSEVWNVINLTE-DNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDA 497 (579)
Q Consensus 422 ~~~~g~~~~~~iNg~~~~~---~~~~~~~~G~~~~w~l~N~~~-~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~ 497 (579)
...|+|||+.|.+ +....++.|++|+|+|.|.+. +.||||||||+||||+++.+ +
T Consensus 358 ------~~~w~iNG~~f~~~~~p~l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g-------------~-- 416 (534)
T 3abg_A 358 ------GPTWTINGVAFADVQNRLLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSG-------------N-- 416 (534)
T ss_dssp ------CSTTCCCCBTTBCTTSCCCCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSC-------------C--
T ss_pred ------CceeEECCcccCCCCCcceeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCC-------------C--
Confidence 1358999999974 456678999999999999874 59999999999999998422 0
Q ss_pred ccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEE
Q 008071 498 IKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLK 576 (579)
Q Consensus 498 ~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~ 576 (579)
|...+.+... .|||||.|+|+++++|+++|. +||| |||||||++|||.|||+.|+
T Consensus 417 ----------~~~~~~~~~~-~~rDTV~v~pg~~v~I~~~~a-------------dnpG~w~~HCHil~H~d~GMm~~~~ 472 (534)
T 3abg_A 417 ----------NARTVMPYES-GLKDVVWLGRRETVVVEAHYA-------------PFPGVYMFHCHNLIHEDHDMMAAFN 472 (534)
T ss_dssp ----------SSSCCCSGGG-SCBSEECCCSSEEEEEEEECC-------------SCCEEEEEEESCHHHHHTTCEEEEE
T ss_pred ----------CcCcCCcccc-CCcCeEEcCCCCEEEEEEEEC-------------CCCccEEEecChHHHHhcCCceEEE
Confidence 1001122333 899999999999998877664 5899 99999999999999999999
Q ss_pred Ec
Q 008071 577 LI 578 (579)
Q Consensus 577 V~ 578 (579)
|.
T Consensus 473 V~ 474 (534)
T 3abg_A 473 AT 474 (534)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 5
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=100.00 E-value=1.3e-89 Score=744.14 Aligned_cols=437 Identities=24% Similarity=0.370 Sum_probs=350.6
Q ss_pred ccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCC
Q 008071 43 DELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPS 122 (579)
Q Consensus 43 ~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~ 122 (579)
.+||+||++++... ..|+|++++.++++ ++. .+.+|+|| |++||||||+++||+|+|+|+|+|++
T Consensus 4 ~~LpiP~~~~~~~~--------~~~~l~~~~~~~~~-~G~-~~~~~~~N-----G~~pGP~i~~~~Gd~v~v~~~N~l~~ 68 (488)
T 3od3_A 4 PTLPIPDLLTTDAR--------NRIQLTIGAGQSTF-GGK-TATTWGYN-----GNLLGPAVKLQRGKAVTVDIYNQLTE 68 (488)
T ss_dssp CBCCCCCEECCCTT--------SEEEEEEEEEEEEE-TTE-EEEEEEES-----SSSBCCEEEEETTCEEEEEEEECSSS
T ss_pred CCCCCCCcccCCCC--------eeEEEEEEEEEEcc-CCe-EEEEEEEC-----CcCCCCeEEEeCCeEEEEEEEeCCcC
Confidence 68999999876321 36889999999899 555 78999997 99999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCCh
Q 008071 123 KHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGL 202 (579)
Q Consensus 123 ~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~ 202 (579)
+|+|||||+++++.+||+| ||+|.||++| +|+|++++++||||||||.++.
T Consensus 69 ---------------------~tsiHwHG~~~~~~~DG~p-----~~~i~PG~~~---~Y~f~~~~~aGT~wYH~H~~~~ 119 (488)
T 3od3_A 69 ---------------------ETTLHWHGLEVPGEVDGGP-----QGIIPPGGKR---SVTLNVDQPAATCWFHPHQHGK 119 (488)
T ss_dssp ---------------------CBCCEEETCCCCHHHHCCT-----TCCBCTTCEE---EEEEECCSCSEEEEEECCCTTT
T ss_pred ---------------------ceeEeecccccCcccCCCC-----cCcCcCCCeE---EEEEecCCCceeEEEEecCCCc
Confidence 8999999999999999986 6889999999 9999999779999999999999
Q ss_pred hhhhhcccceEEEEEEcCCCCCCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc
Q 008071 203 TRINLLAGLVGAYIVRHHDVETPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA 281 (579)
Q Consensus 203 t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~ 281 (579)
++.|+++||+|+|||++++ +..+.+|+.| .+|++|+|+||+++.+|++.+.... .....++.||.++|||+.
T Consensus 120 t~~q~~~GL~G~liV~~~~-~~~~~lp~~y~~~d~~lvl~D~~~~~~g~~~~~~~~------~~~~~g~~gd~~lvNG~~ 192 (488)
T 3od3_A 120 TGRQVAMGLAGLVVIEDDE-ILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDV------MTAAVGWFGDTLLTNGAI 192 (488)
T ss_dssp HHHHHHTTCCEEEEEECHH-HHTTCCCCCBTTTEEEEEEEEECBCTTSSBCCCCSH------HHHHHCCCCSEEEETTBS
T ss_pred chhhhhccceeEEEEcCcc-ccccCCcccCCccceeEEEEEeeecCCCceeccccc------cccccCCCCCEEEEcCCc
Confidence 9999999999999999776 4556678754 4699999999999988877543110 000124678999999999
Q ss_pred cCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 282 WPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 282 ~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
+|.+.+++++|||||||+|+++.|.|+|.+||+|+||++||+++.+|+.+++|.|+|||||||+|++++. +.|.|.+.
T Consensus 193 ~p~~~v~g~~~RlRliNas~~~~~~l~i~dg~~~~vIa~DG~~l~~P~~~~~l~l~pGeR~dvlv~~~~~--~~~~l~~~ 270 (488)
T 3od3_A 193 YPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDN--KPFDLVTL 270 (488)
T ss_dssp SCEEEEEEEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTEEEEEEEEESCEEECTTCEEEEEEEECTT--CCEEEEEC
T ss_pred CccEecCCCEEEEEEEccCCCceeeeeecCCCeEEEEEeCCCcccCccEeceEEECCCCEEEEEEEeCCC--ceEEEEEe
Confidence 9999998899999999999999999999779999999999999989999999999999999999999974 36777764
Q ss_pred CCCCCCCCCCCCC--CCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEee------------------
Q 008071 362 APYPYPSGDPVND--ANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEY------------------ 421 (579)
Q Consensus 362 ~~~~~~~g~~~~~--~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~------------------ 421 (579)
.... .|..... ....++++.... ..+...+|..|.+++..+......+|++.|...
T Consensus 271 ~~~~--~g~~~~~~~~~~~~~~~~~~~--~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 346 (488)
T 3od3_A 271 PVSQ--MGMAIAPFDKPHPVMRIQPIA--ISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQ 346 (488)
T ss_dssp CCSS--TTTTSTTTTSCEEEEEEEEEE--EECCCCCCSCCCCCCCCCCCTTCCEEEEEEEECHHHHHHHHHHHHHHHGGG
T ss_pred ccCC--CCcccccccCccceeEecccc--cCCCCCCCcccccCCCCcccccccceEEEEEeccccccccccccccccccc
Confidence 3211 1211111 122355555432 234567888888776533323334555555210
Q ss_pred -ecC-----------CCC--------c----ceEEEcCeecC-CCcccccCCCCeEEEEEEeCC-CCCceeeeeeccEEE
Q 008071 422 -TSD-----------IDE--------P----THLFINGKSYE-EPVTETPKAGTSEVWNVINLT-EDNHPLHIHLGLFVV 475 (579)
Q Consensus 422 -~~~-----------~g~--------~----~~~~iNg~~~~-~~~~~~~~~G~~~~w~l~N~~-~~~HP~HlHg~~Fqv 475 (579)
+.. .|. . ..|+|||+.|+ +.+.+.+++|++|+|+|.|.+ .+.|||||||++|||
T Consensus 347 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ING~~~~~~~~~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~V 426 (488)
T 3od3_A 347 AMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRI 426 (488)
T ss_dssp GGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEETTBCCCTTCCSEECCBSSCEEEEEECTTCCCCEEEEETTCCBEE
T ss_pred ccccccccccccccccCccccccccccccccceeeECCeeCCCCCCceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEE
Confidence 000 010 0 13899999998 456689999999999999998 679999999999999
Q ss_pred EeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCC
Q 008071 476 LDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEP 555 (579)
Q Consensus 476 l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~np 555 (579)
++++ | .++++++++|||||.|+ |++++|+++|+. + +++|
T Consensus 427 l~~~----------------------------g--~~~~~~~~~~kDTV~v~-g~~~~i~~~f~~--~--------~~~~ 465 (488)
T 3od3_A 427 LSEN----------------------------G--KPPAAHRAGWKDTVKVE-GNVSEVLVKFNH--D--------APKE 465 (488)
T ss_dssp EEBT----------------------------T--BCCCGGGSSSBSEEEES-SSEEEEEECBCS--C--------CCGG
T ss_pred eccC----------------------------C--CccccccCCceeEEEeC-CCEEEEEEEecc--C--------CCCC
Confidence 9983 3 23345678999999999 999999999972 1 3578
Q ss_pred c-eEEeeccccccccCccccEEE
Q 008071 556 G-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 556 g-w~~HCHil~Hed~GMm~~~~V 577 (579)
| ||||||||+|||.|||++|+|
T Consensus 466 G~~m~HCH~l~Hed~GMm~~f~V 488 (488)
T 3od3_A 466 HAYMAHCHLLEHEDTGMMLGFTV 488 (488)
T ss_dssp GCEEEEESSHHHHHTTCEEEEEC
T ss_pred CCEEEeCCchHHHhcCCcEEEEC
Confidence 8 999999999999999999987
No 6
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=100.00 E-value=9.5e-89 Score=736.50 Aligned_cols=430 Identities=22% Similarity=0.333 Sum_probs=351.8
Q ss_pred cccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcC
Q 008071 40 MFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNH 119 (579)
Q Consensus 40 ~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~ 119 (579)
.|..+||+||++++.. + .+++|++.+.++++.++. .+.+|+|| |++|||+||+++||+|+|+|+|+
T Consensus 2 ~~~~~l~~p~~~~~~~----~----~~~~l~~~~~~~~~~~g~-~~~~~~~n-----g~~pGP~i~~~~Gd~v~v~~~N~ 67 (451)
T 2uxt_A 2 GQQQPLPVPPLLESRR----G----QPLFMTVQRAHWSFTPGT-RASVWGIN-----GRYLGPTIRVWKGDDVKLIYSNR 67 (451)
T ss_dssp -CCCBCCCCCEECCSS----S----CCEEEEEEECCGGGCSSS-SSCCEEET-----TSSBCCEEEEETTCEEEEEEEEC
T ss_pred CCCccCCCCCcccCCC----c----eEEEEEEEEEEEEcCCCc-eeEEEEEC-----CcccCceEEEeCCCEEEEEEEEC
Confidence 3667899999986532 2 368898889887876665 79999997 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCC
Q 008071 120 LPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHA 199 (579)
Q Consensus 120 l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~ 199 (579)
|+. +|+|||||+++++.+||+| ||+|.||++| +|+|++++++||||||||.
T Consensus 68 l~~---------------------~tsiHwHG~~~~~~~DG~~-----~~~i~PG~~~---~Y~f~~~~~~GT~wYH~H~ 118 (451)
T 2uxt_A 68 LTE---------------------NVSMTVAGLQVPGPLMGGP-----ARMMSPNADW---APVLPIRQNAATLWYHANT 118 (451)
T ss_dssp SSS---------------------CBCEEEETCCCCGGGSCSG-----GGCBCTTCEE---CCEEECCSCSEEEEEEECC
T ss_pred CCC---------------------CccEEECCccCCCCCCCCC-----cCcCCCCCeE---EEEEEcCCCCcceEEecCC
Confidence 997 8999999999999999987 6899999999 9999999779999999999
Q ss_pred CChhhhhhcccceEEEEEEcCCCCCCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEEC
Q 008071 200 MGLTRINLLAGLVGAYIVRHHDVETPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVN 278 (579)
Q Consensus 200 ~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VN 278 (579)
++.++.|+++||+|+|||++++ +..+++|..| ++|++|+|+||+++.++++.+... ...++.+|.++||
T Consensus 119 ~~~t~~q~~~Gl~G~liV~~~~-~~~~~~p~~y~~~e~~l~l~D~~~~~~~~~~~~~~---------~~~~~~~d~~liN 188 (451)
T 2uxt_A 119 PNRTAQQVYNGLAGMWLVEDEV-SKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEP---------GSGGFVGDTLLVN 188 (451)
T ss_dssp TTTHHHHHHTTCEEEEEEECHH-HHHSSSCCCBTTTEEEEEEEEEEECTTSCEECCCC---------SSSCCCCSEEEET
T ss_pred CCchhhhHhhcceEEEEEecCc-ccccCCCccCCCceEEEEEEeeecCCCCceecccc---------cCCCCcCCEEEEC
Confidence 9999999999999999999765 4445567643 789999999999999998865321 1245678999999
Q ss_pred CcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEE
Q 008071 279 GKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAIL 358 (579)
Q Consensus 279 G~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l 358 (579)
|+.+|+++|++++|||||||+|+++.+.|+|.+||+|+||++||+++.+|+.++++.|+|||||||+|++++. ++|+|
T Consensus 189 G~~~p~~~v~~g~~RlRliNa~~~~~~~~~i~dg~~~~vi~~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~--~~~~l 266 (451)
T 2uxt_A 189 GVQSPYVEVSRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNG--DEVSI 266 (451)
T ss_dssp TEESCEEEECSSEEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEEEEEEESSEEECTTCEEEEEEECTTC--CCEEE
T ss_pred CcccceEEecCCEEEEEEEccCCceeEEEEECCCCeEEEEEeCCCccCCceEeceEEECceeEEEEEEEeCCC--CEEEE
Confidence 9999999999889999999999999999999559999999999999989999999999999999999999964 48999
Q ss_pred ecCCCCCCCCC------CCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCCCcceEE
Q 008071 359 ANDAPYPYPSG------DPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLF 432 (579)
Q Consensus 359 ~~~~~~~~~~g------~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~ 432 (579)
++......... ........+|++|++.+........+|..|.+++.++. ....+|.+.|.. .|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~p~~L~~~~~~~~-~~~~~~~~~l~~---------~~~ 336 (451)
T 2uxt_A 267 TCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAG-SPIRSRDISLGD---------DPG 336 (451)
T ss_dssp EC----------------CCCCSCCEEEEEEECSCCC----CCCSCSSSSCCCCC-CCSEEEEEEECS---------SSS
T ss_pred EecCccccccccccccccCCCCCCcceEEEEecCCCcCccccCccccCCCCCCCC-CCcceEEEEEee---------EEE
Confidence 87643211110 01112345799998876443334567888887765443 344567776642 489
Q ss_pred EcCeecCC-CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCccc
Q 008071 433 INGKSYEE-PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKL 511 (579)
Q Consensus 433 iNg~~~~~-~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~ 511 (579)
|||+.|+. ...+.++.|++|+|+|+|. +.||||||||+|||++++ | .
T Consensus 337 iNg~~f~~~~~~~~~~~G~~~~~~l~N~--~~HP~HLHGh~F~Vl~~~----------------------------G--~ 384 (451)
T 2uxt_A 337 INGQLWDVNRIDVTAQQGTWERWTVRAD--EPQAFHIEGVMFQIRNVN----------------------------G--A 384 (451)
T ss_dssp BTTBCCCTTCCCEEEETTCEEEEEEEEE--EEEEEEETTCEEEEEEET----------------------------T--B
T ss_pred ECCEeCCCCCCcEEcCCCCEEEEEEECC--CCcCeEECCceEEEEeeC----------------------------C--c
Confidence 99999986 4467899999999999997 699999999999999983 3 2
Q ss_pred ccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 512 EVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 512 ~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
++++.++.|||||.| |++++|+++|+. . .+++| ||||||||+|||.|||++|+|.
T Consensus 385 ~~~~~~p~~rDTv~v--g~~~~i~~~~dn--p--------g~~~g~w~~HCHil~H~d~GMm~~~~v~ 440 (451)
T 2uxt_A 385 MPFPEDRGWKDTVWV--DGQVELLVYFGQ--P--------SWAHFPFYFNSQTLEMADRGSIGQLLVN 440 (451)
T ss_dssp CCCGGGSSCBSEEEE--EEEEEEEEECCS--C--------CBTTBCEEEEESSHHHHHTTCEEEEEEE
T ss_pred CCCcccCCCccEEEE--CCEEEEEEEeCC--C--------CCCCCceEEeCCchhHHhCCCcEEEEEc
Confidence 345567899999999 899999888872 1 23567 9999999999999999999986
No 7
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=100.00 E-value=5.5e-88 Score=731.67 Aligned_cols=434 Identities=24% Similarity=0.395 Sum_probs=353.4
Q ss_pred cccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcC
Q 008071 40 MFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNH 119 (579)
Q Consensus 40 ~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~ 119 (579)
.+..+|.+||.+.+.... ++ ..+|+|++++.++++.++. .+.+|+|| |++|||+||+++||+|+|+|+|+
T Consensus 30 p~~~~l~~~p~l~~~~~~-~~---~~~~~L~~~~~~~~~~~G~-~~~~~~~N-----G~~PGPtIr~~~Gd~v~v~v~N~ 99 (481)
T 3zx1_A 30 PQGEILKALPLLKNESKE-KN---IFHATLEIKENHIELIKGK-KTLFYTYN-----GLVPAPKIEVFEGDKLEILVKNK 99 (481)
T ss_dssp CBSCBCCCCCBCCCCCCS-TT---EEEEEEEEEEEEECCSTTC-CEEEEEET-----TBSSCCBEEEETTCEEEEEEEEC
T ss_pred CCcCcCCCCCccCCcccC-CC---eEEEEEEEEEEEEEccCCc-EEEEEEEC-----CCCCCceEEEECCcEEEEEEEeC
Confidence 567899999998775422 22 2579999999999987776 78999997 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCC-CceeeeecC
Q 008071 120 LPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQ-PGNLWYHDH 198 (579)
Q Consensus 120 l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~-~Gt~wYH~H 198 (579)
|++ +|+|||||+++++.+||+| ||+|.||++| +|+|+++++ +||||||||
T Consensus 100 l~~---------------------~tsiHwHGl~~~~~~DG~p-----q~~I~PG~s~---~Y~f~~~~~~~GT~WYH~H 150 (481)
T 3zx1_A 100 LKE---------------------ATTIHWHGVPVPPDQDGSP-----HDPILAGEER---IYRFEIPQDSAGTYWYHPH 150 (481)
T ss_dssp SSS---------------------CBCCEEETCCCCGGGSCCT-----TSCBCTTCEE---EEEEECCTTCCEEEEEECC
T ss_pred CCC---------------------CeeEEecCcccCCccCCCc-----cCcCCCCCeE---EEEEeCCCCCCceEEEeec
Confidence 998 8999999999999999986 6899999999 999999854 799999999
Q ss_pred CCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEEC
Q 008071 199 AMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVN 278 (579)
Q Consensus 199 ~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VN 278 (579)
.++.++.|+++||+|+|||++++ +..+.+| +++ |+|+||+++.+|++... ....+..++.|+.++||
T Consensus 151 ~~~~t~~q~~~GL~G~lIV~~~~-~~~~~~~----~~~-l~l~D~~~~~~g~~~~~-------~~~~~~~g~~gd~~lvN 217 (481)
T 3zx1_A 151 PHYTASKQVFMGLAGAFVIKAKK-DALSHLK----EKD-LMISDLRLDENAQIPNN-------NLNDWLNGREGEFVLIN 217 (481)
T ss_dssp CTTTHHHHHHTTCCEEEEEECSS-CTTTTSE----EEE-EEEEEECCBTTSCCCCC-------CHHHHHHCCCCSEEEET
T ss_pred CCCcchhhhhccceEEEEEcCcc-ccccCCC----cee-EEEEEEeccCCCccccc-------cchhhccCCcCCEEEEC
Confidence 99999999999999999999776 4444443 233 99999999988876310 00122345678999999
Q ss_pred CcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEE
Q 008071 279 GKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAIL 358 (579)
Q Consensus 279 G~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l 358 (579)
|+.+|.++|++++ ||||||+|+++.+.|+| +|+.|+||++||+++.+|+.+++|.|+|||||||+|++++. ++|.|
T Consensus 218 G~~~p~l~v~~g~-RlRliNa~~~~~~~l~i-~g~~~~vIa~DGg~~~~P~~~~~l~l~pgeR~dvlv~~~~~--~~~~l 293 (481)
T 3zx1_A 218 GQFKPKIKLATNE-RIRIYNATAARYLNLRI-QGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKD--GNFKL 293 (481)
T ss_dssp TEESCEEEEETTE-EEEEEECCSSCCEEEEE-TTCEEEEEEETTEEEEEEEEESSEEECTTCEEEEEEECSSC--EEEEE
T ss_pred CccCceEEecCCC-EEEEEecCCCeEEEEEE-CCCceEEEEcCCCccCCceEeCeEEECCccEEEEEEEcCCC--cEEEE
Confidence 9999999999977 99999999999999999 59999999999999999999999999999999999999974 37888
Q ss_pred ecCCCCCCCCCCCC--CCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCC------Cc--
Q 008071 359 ANDAPYPYPSGDPV--NDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDID------EP-- 428 (579)
Q Consensus 359 ~~~~~~~~~~g~~~--~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g------~~-- 428 (579)
.+..... .|... ......++++++.+. ...+|..|.+++.++.+ ..+|++.|.......+ ..
T Consensus 294 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~----~~~lP~~l~~~~~~~~~--~~~r~~~l~~~~~~~~~~~~~~~~~~ 365 (481)
T 3zx1_A 294 ESAYYDR--DKMMVKEEPNTLFLANINLKKE----NVELPKNLKIFKPSEEP--KEFKEIIMSEDHMQMHGMMGKSEGEL 365 (481)
T ss_dssp EECCCCC--CCSSCCCCCCCEEEEEEEEECC----CCCCCSCSCCCCCCCCC--CEEEEEEEEECCSTTTTGGGCCHHHH
T ss_pred EEecccc--cCccccCCCCceeEEEEecCCC----CccCCccccCCCCCCCC--CcEEEEEEeccchhcccccccccccc
Confidence 7753211 11111 123446888888762 25678888777654333 3677787765321100 00
Q ss_pred -----ceEEEcCeecC-CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccc
Q 008071 429 -----THLFINGKSYE-EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHI 502 (579)
Q Consensus 429 -----~~~~iNg~~~~-~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~ 502 (579)
..|+|||+.|+ +...+.+++|++|+|+|.|.+.+.|||||||++|||+++.. +
T Consensus 366 ~~~~~~~~~iNG~~~~~~~~~~~~~~G~~v~w~l~N~~~~~Hp~HlHG~~F~vl~~~~--------------~------- 424 (481)
T 3zx1_A 366 KIALASMFLINRKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKL--------------N------- 424 (481)
T ss_dssp HHHHHTTEEETTBCCCTTCCCEEEETTCCEEEEEEECSSSCEEEEETTCCEEEEEEEE--------------T-------
T ss_pred cccccceeEECCEeCCCCCceEEeCCCCEEEEEEEcCCCCceeEEEeccEEEEEEecc--------------c-------
Confidence 24999999997 56678999999999999999999999999999999999831 1
Q ss_pred cccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 503 SKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 503 ~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
| .++.+++++|||||.|+||++++|+|+|+ ||| |||||||++|||.|||+.|+|.+
T Consensus 425 -----g--~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d--------------~pG~w~~HCHil~H~d~GMm~~~~V~~ 481 (481)
T 3zx1_A 425 -----G--KVQKAEFRALRDTINVRPNEELRLRMKQD--------------FKGLRMYHCHILEHEDLGMMGNLEVKE 481 (481)
T ss_dssp -----T--EEEECSSCCEESEEEECTTCEEEEEECCC--------------SCEEEEEEESSHHHHHTTCEEEEEEEC
T ss_pred -----C--CCCCcccCcccceEEECCCCEEEEEEEcC--------------CCeeEEEEcCChHHHhcCCceEEEEeC
Confidence 3 23345678999999999999999977765 889 99999999999999999999964
No 8
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=100.00 E-value=7.7e-85 Score=704.93 Aligned_cols=430 Identities=26% Similarity=0.398 Sum_probs=332.7
Q ss_pred CCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCC-CCccEEEEECCCEEEEE
Q 008071 37 QLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTAT-VPGPTIEALHGIDTYVT 115 (579)
Q Consensus 37 ~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~-~PGPtI~v~~Gd~v~v~ 115 (579)
.+.+..++||+||.+++. .+++|++ |+|| |+ +||||||+++||+|+|+
T Consensus 3 ~~~~~~~~l~~p~~~~~~----------~~~~l~~----------------~~~N-----g~~~pGP~i~~~~Gd~v~v~ 51 (448)
T 3aw5_A 3 EVKRPETSAPVPPLIKEA----------TYIEATA----------------SGYM-----AEGVLNPTIILRRGQRVDMT 51 (448)
T ss_dssp --------CCCCCEESCC----------SEEEEET----------------TEEE-----ETTEESCEEEEETTCEEEEE
T ss_pred ccccCCCCCCCCcccCCC----------cEEEEEE----------------EEEC-----CccccCceEEEeCCCEEEEE
Confidence 456778999999998651 2566665 9998 99 99999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeee
Q 008071 116 WQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWY 195 (579)
Q Consensus 116 ~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wY 195 (579)
|+|+|+. +|+|||||+++++.+||+|+ |+|.||++| +|+|+++|++|||||
T Consensus 52 ~~N~l~~---------------------~tsiHwHG~~~~~~~DG~~~-----~~i~PG~~~---~Y~f~~~~~~GT~wY 102 (448)
T 3aw5_A 52 LKNKLTE---------------------PTIVHWHGFDVNWHNDAHPS-----FAITPGESY---NYSFDVVNRAGTYLY 102 (448)
T ss_dssp EEECSSS---------------------CBCEEEETCCCCHHHHTCGG-----GCBCTTCEE---EEEEECCSCSEEEEE
T ss_pred EEECCCC---------------------ceeEEeCCccCCCccCCCCC-----ccCCCCCEE---EEEEEcCCCCCceEe
Confidence 9999998 89999999999998999986 789999999 999999988999999
Q ss_pred ecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEE
Q 008071 196 HDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAI 275 (579)
Q Consensus 196 H~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~ 275 (579)
|||.|+.++.|+++||+|+|||++++ +. +.+|.+ .+|++|+|+||+++. +++.+. .+.. ....++.++.+
T Consensus 103 H~H~~~~~~~q~~~Gl~G~liV~~~~-~~-~~l~~d-~~e~~l~l~D~~~~~-~~~~~~-~~~~-----~~~~~~~~~~~ 172 (448)
T 3aw5_A 103 HPHPHGLTAKQFYMGQLGLVIVEDSG-SD-LGFKYG-VNDLPLVISDRRFIG-GAPVYN-PTPM-----EMIAGFLGNAV 172 (448)
T ss_dssp EECCTTTHHHHHHTTCCEEEEEECTT-TT-TTCCBT-TTEEEEEEEEEEEET-TEEECC-CCHH-----HHHHCCCCSEE
T ss_pred ccCCCCchHHHHhccceEEEEEeCCc-cc-cCCCCC-CceEEEEEEeeccCC-Cccccc-cccc-----ccccCccccEE
Confidence 99999999999999999999999776 33 455633 389999999999998 877531 0000 01134578999
Q ss_pred EECCcccCeEEecCcEEEEEEEecCCCeeEEEEE--cCC---CeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCC
Q 008071 276 IVNGKAWPRMTVRRRKYRFRIINASNARFYRFFF--TNG---LRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSE 350 (579)
Q Consensus 276 ~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l--~~g---~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~ 350 (579)
+|||+.+|.++|++++|||||||+|+.+.+.|+| . | |+|+||++||+++++|+.++++.|+|||||||+|++++
T Consensus 173 liNG~~~p~~~v~~g~~RlRliNa~~~~~~~~~i~~~-~~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~ 251 (448)
T 3aw5_A 173 LVNGVKDAVFKLSGGSYRLRLVNGSNARLYMLSIVKK-NGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGE 251 (448)
T ss_dssp EETTEETCEEEEEEEEEEEEEEECSSSCCEEEEEEET-TSCEECEEEEEETTEEEEEEEEESCEEECTTCEEEEEEEECS
T ss_pred EECCcccceEEECCCeEEEEEEcCCCcceEEEEEEcC-CCCCccEEEEEeCCCccCCceEeceEEECCcceEEEEEECCC
Confidence 9999999999999889999999999999999999 8 6 99999999999997799999999999999999999984
Q ss_pred CCCcEEEEecCCCCCCCCC---C----CCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec
Q 008071 351 SKSDVAILANDAPYPYPSG---D----PVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS 423 (579)
Q Consensus 351 ~~g~~~~l~~~~~~~~~~g---~----~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~ 423 (579)
..|+|++........+ . .+......++.+++++...... |..|.+++..+. ....+|++.|...
T Consensus 252 ---~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~L~~lp~~~~-~~~~~~~~~l~~~-- 322 (448)
T 3aw5_A 252 ---GVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVP---VEALSDPPPEPP-KPTRTRRFALSLS-- 322 (448)
T ss_dssp ---EEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCCC---CCCCSCCCCCCC-CCSEEEEEEEEEE--
T ss_pred ---CceEEEccccccccCccccccccccCCCCCceEEEEEEcCCCCCCC---ccccCCCCCCCC-CCCceEEEEEeCC--
Confidence 2789988653211111 0 0111234678888865432211 555655554322 3345677777542
Q ss_pred CCCCcceEEEcCeecCC-Ccccc-cCCCCeEEEEEEeCC-CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccc
Q 008071 424 DIDEPTHLFINGKSYEE-PVTET-PKAGTSEVWNVINLT-EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKC 500 (579)
Q Consensus 424 ~~g~~~~~~iNg~~~~~-~~~~~-~~~G~~~~w~l~N~~-~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~ 500 (579)
...|+|||+.|.. ...+. ++.|++|+|+|.|.+ .+.|||||||++||||++++.. ... .
T Consensus 323 ----~~~~~iNg~~~~~~~p~~~~~~~g~~v~~~i~N~~~~~~HP~HLHG~~F~Vl~~~G~~-----~~~---------~ 384 (448)
T 3aw5_A 323 ----GMQWTINGMFWNASNPLFEHVSVEGVELWEIVNDKASMPHPMHLHGFPMWIIERKDSP-----RQV---------A 384 (448)
T ss_dssp ----TTEEEETTBCCCTTCTTCCCEEECEEEEEEEEECSSSCCEEEEESSSCBEEEEEESCC-----HHH---------H
T ss_pred ----CceeeECCCcCCCCCCceeccCCCCeEEEEEEcCCCCCCcCEEECCceEEEEEecCCC-----ccc---------c
Confidence 1259999999974 44567 899999999999998 8899999999999999985321 000 0
Q ss_pred cccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCceEEeeccccccccCccccEEEc
Q 008071 501 HISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPGYVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 501 ~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npgw~~HCHil~Hed~GMm~~~~V~ 578 (579)
....+. ...++.++.|||||.|+|+++++|++||+. +. ++|| |||||||++|||.|||++|+|.
T Consensus 385 ~~~~~~----~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~--~~-------adnp-w~~HCHil~H~d~GMm~~~~V~ 448 (448)
T 3aw5_A 385 ELAVDN----RGRLPTDLGLKDTVLIWPGETVKIVVNFDA--KK-------RGQL-FPFHCHNLEHEDGGMMINIAVK 448 (448)
T ss_dssp TTCCST----TCCCGGGGSCBSEEEECTTCEEEEEEEECG--GG-------TTCE-EEEEESSHHHHHTTCEEEEEEC
T ss_pred cccccc----cCCCccccCCccEEEeCCCCEEEEEEEecc--cC-------CCCc-EEEEcCChHHHhCCCceEEEeC
Confidence 001111 112345678999999999999999999972 10 3688 9999999999999999999984
No 9
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=100.00 E-value=1.5e-83 Score=694.69 Aligned_cols=423 Identities=28% Similarity=0.484 Sum_probs=334.2
Q ss_pred ccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCC
Q 008071 43 DELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPS 122 (579)
Q Consensus 43 ~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~ 122 (579)
++|++||.+++. +|. .+++|++.+.++++. + ..+.+|+|| |++|||+|||++||+|+|+|+|+|+.
T Consensus 2 ~~l~~p~~~~~~----~~~---~~~~l~~~~~~~~~~-g-~~~~~~~~n-----g~~pGP~i~~~~Gd~v~v~~~N~l~~ 67 (439)
T 2xu9_A 2 PSFPEPKVVRSQ----GGL---LSLKLSATPTPLAIA-G-QRATLLTYG-----GSFPGPTLRVRPRDTVRLTLENRLPE 67 (439)
T ss_dssp CSSCCCCEEECB----TTE---EEEEEEEEEEEEEET-T-EEEEEEEET-----TBSSCCEEEECTTCEEEEEEEECSSS
T ss_pred CCCCCCceeccC----CCe---EEEEEEEEEEEEEcC-C-ceEEEEEEC-----CcccCCEEEEeCCCEEEEEEEECCCC
Confidence 689999998642 332 478899888888885 4 478999997 99999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCC-CCCceeeeecCCCC
Q 008071 123 KHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNM-QQPGNLWYHDHAMG 201 (579)
Q Consensus 123 ~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~-~~~Gt~wYH~H~~g 201 (579)
+|+|||||+++++.+||++ . .|.||++| +|+|+++ +++||||||||.++
T Consensus 68 ---------------------~tsiHwHG~~~~~~~DG~~---~---~I~PG~~~---~Y~f~~~~~~~GT~wYH~H~~~ 117 (439)
T 2xu9_A 68 ---------------------PTNLHWHGLPISPKVDDPF---L---EIPPGESW---TYEFTVPKELAGTFWYHPHLHG 117 (439)
T ss_dssp ---------------------CBCCEEETCCCCTTTSCTT---C---CBCTTCEE---EEEEECCSSCCEEEEEECCCTT
T ss_pred ---------------------CcceEeCCCCCCccccCCc---c---cCCCCCeE---EEEEecCCCCCcceEeccCCCC
Confidence 8999999999999999985 2 38999999 9999974 38999999999999
Q ss_pred hhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc
Q 008071 202 LTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA 281 (579)
Q Consensus 202 ~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~ 281 (579)
.++.|+++||+|+|||+++.+..+ .++ +++|++|+|+||+++.+ .+. . .. ...+..+..++.++|||+.
T Consensus 118 ~t~~q~~~Gl~G~liV~~~~~~~~-~~~--~~~e~~l~l~D~~~~~~-~~~-~-~~-----~~~~~~g~~~~~~~iNG~~ 186 (439)
T 2xu9_A 118 RVAPQLFAGLLGALVVESSLDAIP-ELR--EAEEHLLVLKDLALQGG-RPA-P-HT-----PMDWMNGKEGDLVLVNGAL 186 (439)
T ss_dssp SHHHHHHTTCCEEEEECCGGGGSH-HHH--TSEEEEEEEEEECEETT-EEC-C-CC-----HHHHHHCCCCSEEEETTEE
T ss_pred chHHHHHhhCeEEEEEcCccccCc-cCC--CCCcEEEEEEeeeeCCC-CcC-C-CC-----ccccccCCCCCEEEECCcc
Confidence 999999999999999997652111 011 37899999999998864 221 0 00 0011123457999999999
Q ss_pred cCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 282 WPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 282 ~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
+|.++|++++|||||||+|+++.+.|+| +||+|+||+.||+++.+|+.++++.|+|||||||+|++++ +| .|+|++.
T Consensus 187 ~p~l~v~~g~~RlRliN~~~~~~~~~~i-~gh~~~vi~~DG~~~~~p~~~~~l~l~pgeR~dv~v~~~~-~G-~~~l~~~ 263 (439)
T 2xu9_A 187 RPTLVAQKATLRLRLLNASNARYYRLAL-QDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRK-EG-RFLLQAL 263 (439)
T ss_dssp SCEEECSSSEEEEEEEECCSSCCEEEEE-TTBCEEEEEETTEEEEEEEEESCEEECTTCEEEEEEECCS-SE-EEEEEEE
T ss_pred CCcEEecCCeEEEEEEecCCCceEEEEE-CCceEEEEecCCCCCCCceEeceEEECCceeEEEEEEcCC-Cc-eEEEEec
Confidence 9999999889999999999999999999 6999999999999998999999999999999999999998 44 6888774
Q ss_pred CCCCCCC---CC--C------CCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCCCcce
Q 008071 362 APYPYPS---GD--P------VNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTH 430 (579)
Q Consensus 362 ~~~~~~~---g~--~------~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~ 430 (579)
....-.. |. . .......++.+++.+.. ....+|..|.+++++..+ ...|++.|.... ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~p~~l~~~~~l~~~--~~~r~~~l~~~~----~g~~ 335 (439)
T 2xu9_A 264 PYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNP--KPLPLPKALSPFPTLPAP--VVTRRLVLTEDM----MAAR 335 (439)
T ss_dssp CCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSC--CCCCCCSCCCCCCCCCCC--SEEEEEEEEEEG----GGTE
T ss_pred ccccCCccccccccccccccCCCCCcceeEEEEecCCC--ccccCcccCCCcccCCCC--CcceEEEEEeec----cCce
Confidence 2110000 00 0 00122467778877653 233467766665543322 224677665432 1246
Q ss_pred EEEcCeecCC-CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCc
Q 008071 431 LFINGKSYEE-PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGK 509 (579)
Q Consensus 431 ~~iNg~~~~~-~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~ 509 (579)
|+|||+.|+. ...+.++.|++|+|+|.|.+.+.||||||||+||||+++ |.
T Consensus 336 ~~iNg~~~~~~~~~~~~~~g~~~~~~~~N~~~~~HP~HLHG~~F~Vl~~~----------------------------g~ 387 (439)
T 2xu9_A 336 FFINGQVFDHRRVDLKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVG----------------------------GR 387 (439)
T ss_dssp EEETTBCCCTTCCCEEECTTCEEEEEEEECSSSCEEEEESSCCBEEEEET----------------------------TE
T ss_pred EeECCEECCCCCCceecCCCCEEEEEEEcCCCCCCCceeCCCcEEEEeeC----------------------------CC
Confidence 9999999985 456889999999999999999999999999999999984 21
Q ss_pred ccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 510 KLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 510 ~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+..++.|||||.|+|+++++| ||+ ++||| ||||||||+|||.|||+.|+|
T Consensus 388 ----~~~~p~~rDTv~v~p~~~v~i--~f~------------adnpG~w~~HCHil~H~~~GMm~~~~V 438 (439)
T 2xu9_A 388 ----PFPYRAWKDVVNLKAGEVARL--LVP------------LREKGRTVFHCHIVEHEDRGMMGVLEV 438 (439)
T ss_dssp ----ECSSCCCBSEEEECTTCEEEE--EEE------------CCSCEEEEEEESSHHHHHTTCEEEEEE
T ss_pred ----CCCCCCCeEEEEeCCCCEEEE--EEE------------cCCCCCEEEECCcchhhhcCCcEEEEe
Confidence 123578999999999998877 555 35999 999999999999999999998
No 10
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-80 Score=681.97 Aligned_cols=433 Identities=17% Similarity=0.181 Sum_probs=318.2
Q ss_pred eeEEEeEEEEEEEecCCC-CCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCC-CCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDL-PPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLP-SKHILPWDPTIPTAIPRKKKG 142 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~-~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~-~~~~~~~d~~~~~~~p~~~~~ 142 (579)
.+|++++.+. .+.++. ..+.+|+|| |++|||+||+++||+|+|+|+|+|+ .
T Consensus 3 ~~~~~~v~~~--~~~pdG~~~~~~~~~N-----g~~PGP~i~~~~Gd~v~v~v~N~l~~~-------------------- 55 (534)
T 1zpu_A 3 HTFNWTTGWD--YRNVDGLKSRPVITCN-----GQFPWPDITVNKGDRVQIYLTNGMNNT-------------------- 55 (534)
T ss_dssp EEEEEEEEEE--EECSSSSCCEEEEEET-----TBSSCCCEEEETTCEEEEEEECCCSSC--------------------
T ss_pred EEEEEEEEEE--EecCCCCceEEEEEEC-----CccCCccEEEECCCEEEEEEEeCCCCC--------------------
Confidence 4677777666 456677 689999997 9999999999999999999999999 5
Q ss_pred CCeEEeeCCCCCCC--CCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 143 IPTVVHLHGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 143 ~~t~iH~HG~~~~~--~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
+|+|||||+++.. .+||+|+ ++||+|.||++| +|+|++++++||||||||.+ .|+++||+|+|||+++
T Consensus 56 -~tsiHwHG~~~~~~~~~DG~~~--vtq~pI~PG~~~---~Y~f~~~~~~GT~wYH~H~~----~q~~~Gl~G~liV~~~ 125 (534)
T 1zpu_A 56 -NTSMHFHGLFQNGTASMDGVPF--LTQCPIAPGSTM---LYNFTVDYNVGTYWYHSHTD----GQYEDGMKGLFIIKDD 125 (534)
T ss_dssp -CBCCEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECSSCCEEEEEECCSS----SGGGGTCEEEEEEECT
T ss_pred -CeeEEcCCcccCCCCcccCCCc--cccCCcCCCCeE---EEEEEeCccceeEEEEEcCc----ccccCcceeeEEeCCC
Confidence 8999999999864 5999998 899999999999 99999988999999999996 4999999999999976
Q ss_pred CCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCC-CCCCCCCCCCCCCCCcEEEECCcccCeEEecC-cEEEEEEEe
Q 008071 221 DVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTG-NNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRR-RKYRFRIIN 298 (579)
Q Consensus 221 ~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g-~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~-~~~RlRllN 298 (579)
+ + |..+++|++|+|+||+++.++++...... ..+ ...+..++.++|||+..|.++|++ ++|||||||
T Consensus 126 ~-~-----p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~-----~g~~~~~d~~liNG~~~~~~~v~~g~~~RlRliN 194 (534)
T 1zpu_A 126 S-F-----PYDYDEELSLSLSEWYHDLVTDLTKSFMSVYNP-----TGAEPIPQNLIVNNTMNLTWEVQPDTTYLLRIVN 194 (534)
T ss_dssp T-C-----CSCCSEEEEEEEEEECSSCHHHHHHHHSSTTCT-----TCCCCCCSEEEETTBSSCEEECCSSCEEEEEEEE
T ss_pred C-C-----CCCCcceEEEEeeccccCCHHHHHHHHhccccC-----CCCCCCCceEEECCCCceEEEEECCCEEEEEEEe
Confidence 5 2 22458899999999988876654321100 000 012346899999999999999999 799999999
Q ss_pred cCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCC--CCC
Q 008071 299 ASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVN--DAN 376 (579)
Q Consensus 299 a~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~--~~~ 376 (579)
+|+.+.+.|+| +||+|+||++||+++ +|+.+++|.|+|||||||+|++++..++.|++++..........+.. ...
T Consensus 195 a~~~~~~~~~i-~gh~~~vi~~DG~~~-~P~~~~~l~l~~gqR~dvlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~ 272 (534)
T 1zpu_A 195 VGGFVSQYFWI-EDHEMTVVEIDGITT-EKNVTDMLYITVAQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNA 272 (534)
T ss_dssp CCSSCCEEEEE-TTBCEEEEEETTEEE-EEEEESCEEECTTCEEEEEEECCSCSSCCEEEEEEECGGGSSSCCTTCCCEE
T ss_pred ccCCceEEEEE-cCCeeEEEeccCcCc-cccEeceEEECccceEEEEEEcCCCCCCcEEEEEeccccccccCCCCCCcce
Confidence 99999999999 699999999999999 89999999999999999999998765557888765321100000100 111
Q ss_pred CccEEEEEecCCC-CCC---CCCCC-----CCCCCCCCCCCCCccceEEEEEeeecC-CCCcceEEEcCeecCCC-----
Q 008071 377 GKVMKFIIKKNHE-LDT---WRVPE-----KLIKYPSPNPSSASRTRYIAMYEYTSD-IDEPTHLFINGKSYEEP----- 441 (579)
Q Consensus 377 ~~v~~~~v~~~~~-~~~---~~~P~-----~L~~~~~~~~~~~~~~r~~~l~~~~~~-~g~~~~~~iNg~~~~~~----- 441 (579)
..+++| .+... +.+ ..++. .|+|+...... ...+|++.|...... ......|+|||++|..+
T Consensus 273 ~ail~y--~~~~~~p~~~~~~~~~~~~~~~~l~p~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~iNg~s~~~~~~P~L 349 (534)
T 1zpu_A 273 TSYMVY--NKTAALPTQNYVDSIDNFLDDFYLQPYEKEAIY-GEPDHVITVDVVMDNLKNGVNYAFFNNITYTAPKVPTL 349 (534)
T ss_dssp EEEEES--CTTSCBCCCCCCSCSSCSCCGGGCCBSSCCCCC-CSCSEEEEEEEEEEECTTSCEEEEETTBCCCCCSSCHH
T ss_pred EEEEEe--CCCCCCCCCCcccccccccccccceeCCCCCCC-CCCCeEEEEEEEeeccCCceeEEEECCCcccCCCCCce
Confidence 234444 33211 111 11111 23444332221 223455555432211 11234689999998642
Q ss_pred --------------------cccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCccccc
Q 008071 442 --------------------VTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCH 501 (579)
Q Consensus 442 --------------------~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~ 501 (579)
..+.++.|++++|+|.|.+.+.||||||||+||||+++.+.+.. . +. .
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHGh~F~Vl~~~~~~~~~----~----~G----~ 417 (534)
T 1zpu_A 350 MTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDRTYDDA----L----GE----V 417 (534)
T ss_dssp HHHTTSGGGTTCGGGGCSSSCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECCCCCGG----G----TC----C
T ss_pred eeecccCcccCCCcccCCCceEEEeCCCCEEEEEEeCCCCCCCCeEecCCceEEEeecCCcccc----c----cC----c
Confidence 13567899999999999998999999999999999996431000 0 00 0
Q ss_pred ccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 502 ISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 502 ~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+..|.... ......++.|||||.|+|++++.| ||+ ++||| |||||||++|++.|||++|.+
T Consensus 418 p~~~~~~~-~~~~~~~p~~RDTv~V~pgg~v~I--rF~------------aDNPG~W~~HCHi~~H~~~GM~~~~~~ 479 (534)
T 1zpu_A 418 PHSFDPDN-HPAFPEYPMRRDTLYVRPQSNFVI--RFK------------ADNPGVWFFHCHIEWHLLQGLGLVLVE 479 (534)
T ss_dssp CCCCBTTB-CCCCCSSCEEESEEEECTTCEEEE--EEE------------CCSCEEEEEEECCHHHHHTTCEEEEEE
T ss_pred ccccCccc-cccccCCCCeeeEEEeCCCCEEEE--EEE------------eCCCeeEEEEeCchhHhhcCCeEEEEE
Confidence 00110000 001135689999999999998765 666 46999 999999999999999999976
No 11
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=100.00 E-value=1.1e-79 Score=676.98 Aligned_cols=417 Identities=18% Similarity=0.246 Sum_probs=308.6
Q ss_pred eEEEeEEEEEEEecCCCC-CcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 66 KLKIGMFKKKWKFHRDLP-PTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~-~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
++++++.+.. +.++.. .+.+|+|| |++|||+||+++||+|+|+|+|+|+..+ ...+
T Consensus 25 ~~~l~i~~~~--~~~dg~~~~~~~~~N-----G~~PGP~i~~~~Gd~v~v~v~N~l~~~~----------------~~~~ 81 (521)
T 1v10_A 25 ALDLHILNAN--LDPDGTGARSAVTAE-----GTTIAPLITGNIDDRFQINVIDQLTDAN----------------MRRA 81 (521)
T ss_dssp EEEEEEEEEE--ECTTSSCCEEEEEES-----SSSSCCCEEEETTCEEEEEEEECCCCTT----------------SCCC
T ss_pred eEEEEEEEEE--EcCCCcceEEEEEEC-----CccCCCcEEEeCCCEEEEEEEECCCCcc----------------CCCC
Confidence 4667766764 455555 78999997 9999999999999999999999998310 0118
Q ss_pred eEEeeCCCCCC--CCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCC
Q 008071 145 TVVHLHGGIDE--PESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDV 222 (579)
Q Consensus 145 t~iH~HG~~~~--~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~ 222 (579)
|+|||||+++. +.+||+|+ ++||+|.||++| +|+|++.+++||||||||.+ .|+++||+|+|||+++++
T Consensus 82 tsiHwHGl~~~~~~~~DGv~~--vtq~~I~PG~s~---~Y~f~~~~~~GT~wYH~H~~----~q~~~Gl~G~liV~~~~~ 152 (521)
T 1v10_A 82 TSIHWHGFFQAGTTEMDGPAF--VNQCPIIPNESF---VYDFVVPGQAGTYWYHSHLS----TQYCDGLRGAFVVYDPND 152 (521)
T ss_dssp BCEEEETCCCTTCGGGSCCBT--TTBCCBCTTEEE---EEEEECTTCCEEEEEEECST----TGGGGTCEEEEEEECTTC
T ss_pred ceEecCCeeccCCCccCCCcc--eeeCCcCCCCeE---EEEEecCCCCccEEEEeccC----CchhcCceEEEEEcCCcc
Confidence 99999999994 45999998 899999999999 99999766999999999995 599999999999997762
Q ss_pred CCCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCccc----------CeEEecC-c
Q 008071 223 ETPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAW----------PRMTVRR-R 290 (579)
Q Consensus 223 ~~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~----------P~~~v~~-~ 290 (579)
. ...+.+. ++|++|+|+||+++.++++.+...+. ...+|.++|||+.+ |.++|++ +
T Consensus 153 ~--~~~~~~~d~~e~~l~l~D~~~~~~~~~~~~~~~~----------~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~ 220 (521)
T 1v10_A 153 P--HLSLYDVDDASTVITIADWYHSLSTVLFPNPNKA----------PPAPDTTLINGLGRNSANPSAGQLAVVSVQSGK 220 (521)
T ss_dssp T--TGGGCSBCSGGGEEEEEEECSSCCC-------CC----------CSCCSEEEETTBCCCSSCGGGSCCCEEEECTTC
T ss_pred c--ccccCCCCCceeEEEEcccccCCHHHHhhccCCC----------CCCCCEEEECCcccCCCCCCCCCceEEEECCCC
Confidence 2 1111111 35899999999999888775422111 23479999999987 8999999 8
Q ss_pred EEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCC
Q 008071 291 KYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGD 370 (579)
Q Consensus 291 ~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~ 370 (579)
+|||||||+|+.+.+.|+| +||+|+||++||+++ +|+.++++.|+|||||||+|++++.+| +|+|++...... .+
T Consensus 221 ~~RlRliNa~~~~~~~~~i-~gh~~~vi~~DG~~~-~p~~~~~l~l~pgqR~dvlv~~~~~~g-~y~i~~~~~~~~-~~- 295 (521)
T 1v10_A 221 RYRFRIVSTSCFPNYAFSI-DGHRMTVIEVDGVSH-QPLTVDSLTIFAGQRYSVVVEANQAVG-NYWIRANPSNGR-NG- 295 (521)
T ss_dssp EEEEEEEECCSSCCEEEEE-TTCCEEEEEETTEEE-EEEEESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSSS-CS-
T ss_pred EEEEEEEecCCcccEEEEE-CCCeEEEEecCCccc-cceeeeeEEEcccceEEEEEEcCCCCC-ceeeeecccccc-cc-
Confidence 9999999999999999999 699999999999998 899999999999999999999998654 788876432100 00
Q ss_pred CCCCCCCccEEEEEecCCCCCCC-----CCC-CCCCCCCCCCCCC----CccceEEEEEeeecCCCCcceEEEcCeecCC
Q 008071 371 PVNDANGKVMKFIIKKNHELDTW-----RVP-EKLIKYPSPNPSS----ASRTRYIAMYEYTSDIDEPTHLFINGKSYEE 440 (579)
Q Consensus 371 ~~~~~~~~v~~~~v~~~~~~~~~-----~~P-~~L~~~~~~~~~~----~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~ 440 (579)
.......++++|.......+... .++ ..|.|+.....+. ...++++.+.... .+....|+|||++|..
T Consensus 296 ~~~~~~~ail~y~~~~~~~p~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~iNg~~~~~ 373 (521)
T 1v10_A 296 FTGGINSAIFRYQGAAVAEPTTSQNSGTALNEANLIPLINPGAPGNPVPGGADINLNLRIGR--NATTADFTINGAPFIP 373 (521)
T ss_dssp CGGGTTEEEEEETTCCSCCCCCCCCCSCBCCGGGCCBSSCCCCSSCSSTTCSSEEEECCEEC--CSSSSCCEESSCCCCC
T ss_pred CCCCceeEEEEECCCCCCCCCCCCCcccccchhhcccCCcccCCCcccCCcceEEEEEEEec--CCceeEEEECCCcccC
Confidence 00111235555532211111110 011 1344443211111 1334455443211 2222469999999974
Q ss_pred Cc----------------------ccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcc
Q 008071 441 PV----------------------TETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAI 498 (579)
Q Consensus 441 ~~----------------------~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~ 498 (579)
+. .+.++.|++++|.++| .+.||||||||+||||+++.
T Consensus 374 ~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~N--~~~HP~HLHGh~F~Vl~~~~------------------ 433 (521)
T 1v10_A 374 PTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPG--GGNHPFHLHGHNFDVVRTPG------------------ 433 (521)
T ss_dssp CSSCHHHHHHHTCCCGGGSSSTTTEEEECTTCEEEEEEEC--CBSCEEEESSCCEEEEECTT------------------
T ss_pred CCCchhhhhhcCCcccccCCCCceEEEecCCCEEEEEEcC--CCCCCEEEccceEEEEecCC------------------
Confidence 31 2357899999999999 78999999999999999842
Q ss_pred cccccccccCcccccccccCcccceEEe-CCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEE
Q 008071 499 KCHISKYARGKKLEVSEHEKGWKNVYKM-TPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLK 576 (579)
Q Consensus 499 ~~~~~~~~~G~~~~~~~~~~~~kDTv~v-~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~ 576 (579)
+ ...+..++.|||||.| +|++++.| ||+ ++||| |||||||++|++.|||++|.
T Consensus 434 ---------~--~~~n~~~p~~rDTV~V~p~gg~v~I--rf~------------aDNPG~W~~HCHi~~H~~~GM~~~~~ 488 (521)
T 1v10_A 434 ---------S--SVYNYVNPVRRDVVSIGGGGDNVTF--RFV------------TDNPGPWFLHCHIDWHLEAGLAVVFA 488 (521)
T ss_dssp ---------C--SCCCCSSCCEESEEECCBSSCEEEE--EEE------------CCSCEEEEEEESCHHHHTTTCEEEEE
T ss_pred ---------C--CccccCCCCeeeeEEeCCCCcEEEE--EEE------------eCCCeeEEEeeChHHHHhCCCeEEEE
Confidence 1 1234567899999999 89998766 665 46999 99999999999999999998
Q ss_pred Ec
Q 008071 577 LI 578 (579)
Q Consensus 577 V~ 578 (579)
|-
T Consensus 489 v~ 490 (521)
T 1v10_A 489 ED 490 (521)
T ss_dssp ES
T ss_pred EC
Confidence 73
No 12
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=100.00 E-value=7.7e-79 Score=667.92 Aligned_cols=413 Identities=19% Similarity=0.251 Sum_probs=308.8
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
+|++++.+.. +.++...+.+|+|| |++ ||+||+++||+|+|+|+|+|+.. + ...+|
T Consensus 6 ~~~l~i~~~~--~~~~g~~~~~~~~N-----G~~-GP~i~~~~Gd~v~v~v~N~l~~~-------~---------~~~~t 61 (503)
T 1hfu_A 6 VDTMTLTNAN--VSPDGFTRAGILVN-----GVH-GPLIRGGKNDNFELNVVNDLDNP-------T---------MLRPT 61 (503)
T ss_dssp EEEEEEEEEE--ECTTSCCEEEEEET-----TBS-SCEEEEETTCCEEEEEEECCCCT-------T---------SCCSB
T ss_pred eEEEEEEEEE--ECCCCeEEEEEEEC-----Ccc-CCcEEEeCCCEEEEEEEeCCCCc-------c---------CCCcc
Confidence 5777777764 55566689999997 999 99999999999999999999831 0 01289
Q ss_pred EEeeCCCCC--CCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGID--EPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~--~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++ ++.+||+|+ ++||+|.||++| +|+|++.+++||||||||.+ .|+++||+|+|||+++++.
T Consensus 62 siHwHG~~~~~~~~~DGv~~--vtq~~I~PG~~~---~Y~f~~~~~~GT~wYH~H~~----~q~~~Gl~G~liV~~~~~~ 132 (503)
T 1hfu_A 62 SIHWHGLFQRGTNWADGADG--VNQCPISPGHAF---LYKFTPAGHAGTFWYHSHFG----TQYCDGLRGPMVIYDDNDP 132 (503)
T ss_dssp CEEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEECCTTCCEEEEEEECST----TGGGGTCEEEEEEECTTCT
T ss_pred cEeccceeccCCCccCCCcc--cccCCcCCCCeE---EEEEEeCCCCccEEEEecch----hhhhCcceeeEEEcCCCCC
Confidence 999999999 455999998 899999999999 99999666999999999995 5999999999999977622
Q ss_pred CCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCccc---------CeEEecC-cEE
Q 008071 224 TPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAW---------PRMTVRR-RKY 292 (579)
Q Consensus 224 ~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~---------P~~~v~~-~~~ 292 (579)
...+.+. ++|++|+|+||+++.++++. + . ..+|.++|||+.+ |.++|++ ++|
T Consensus 133 --~~~~~~~d~~e~~l~l~Dw~~~~~~~~~----~-~----------~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~ 195 (503)
T 1hfu_A 133 --HAALYDEDDENTIITLADWYHIPAPSIQ----G-A----------AQPDATLINGKGRYVGGPAAELSIVNVEQGKKY 195 (503)
T ss_dssp --TGGGCSBCSTTSEEEEEEECSSCGGGCC------------------CCSEEEETTBCCBTTCCCCCCCEEEECTTCEE
T ss_pred --cccCCCCCCceEEEEEcccccCChHHhc----C-C----------CCCCEEEECcccccCCCCCCcceEEEEcCCCEE
Confidence 1111111 35899999999988776641 0 0 2478999999988 8999999 899
Q ss_pred EEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCC--CC
Q 008071 293 RFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPS--GD 370 (579)
Q Consensus 293 RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~--g~ 370 (579)
||||||+|+.+.+.|+| +||+|+||++||+++ +|+.+++|.|+|||||||+|++++.+| +|+|++........ +.
T Consensus 196 RlRliN~~~~~~~~~~i-~gh~~~vi~~DG~~~-~p~~~~~l~l~pgeR~dvlv~~~~~~g-~y~i~a~~~~~~~~~~~~ 272 (503)
T 1hfu_A 196 RMRLISLSCDPNWQFSI-DGHELTIIEVDGELT-EPHTVDRLQIFTGQRYSFVLDANQPVD-NYWIRAQPNKGRNGLAGT 272 (503)
T ss_dssp EEEEEECCSSCCEEEEE-TTCCEEEEEETTEEE-EEEEESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSCGGGGGGC
T ss_pred EEEEEecCCcccEEEEE-cCceEEEEeccCccc-cccccCeEEEcccceEEEEEEcCCCcc-ceeeeeccccCCcccccc
Confidence 99999999999999999 699999999999998 899999999999999999999998655 78888753210000 00
Q ss_pred CCCCCCCccEEEEEecCCCCCCCCCCC-------CCCCCCCCCCCC----CccceEEEEEeeecCCCCcceEEEcCeecC
Q 008071 371 PVNDANGKVMKFIIKKNHELDTWRVPE-------KLIKYPSPNPSS----ASRTRYIAMYEYTSDIDEPTHLFINGKSYE 439 (579)
Q Consensus 371 ~~~~~~~~v~~~~v~~~~~~~~~~~P~-------~L~~~~~~~~~~----~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~ 439 (579)
.......++++|.......+.....|. .|.++.....+. ..+++.+.+.... .+ ..|+|||++|.
T Consensus 273 ~~~~~~~ail~y~~~~~~~p~~~~~~~~~~l~~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~~--~~--~~~~iNg~~~~ 348 (503)
T 1hfu_A 273 FANGVNSAILRYAGAANADPTTSANPNPAQLNEADLHALIDPAAPGIPTPGAADVNLRFQLGF--SG--GRFTINGTAYE 348 (503)
T ss_dssp CGGGTTEEEEEETTSCSSCCCCCCCSSCCBCCGGGCBBSSSCSCSSCSSTTCSSEEEECCEEE--ET--TEEEETTBCCC
T ss_pred cCCCceEEEEEECCCCCCCCCCCCCCccCCCccccccccCccCCCCcccCCcceEEEEEEeec--cC--ceEEECCCccC
Confidence 111122356665422211111111121 344443211111 1234444433211 11 26999999997
Q ss_pred CCc----------------------ccccCCCCeEEEEEE-eCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCC
Q 008071 440 EPV----------------------TETPKAGTSEVWNVI-NLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYND 496 (579)
Q Consensus 440 ~~~----------------------~~~~~~G~~~~w~l~-N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d 496 (579)
.+. .+.++.|+++++.++ |.+.+.||||||||+||||+++.
T Consensus 349 ~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~---------------- 412 (503)
T 1hfu_A 349 SPSVPTLLQIMSGAQSANDLLPAGSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAG---------------- 412 (503)
T ss_dssp CCSSCHHHHHHTTCCSGGGSSSTTSEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEECTT----------------
T ss_pred CCCCcchhhhhcCCcccccCCCCceEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEecCC----------------
Confidence 431 235788998888888 56678999999999999999842
Q ss_pred cccccccccccCcccccccccCcccceEEe-CCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCcccc
Q 008071 497 AIKCHISKYARGKKLEVSEHEKGWKNVYKM-TPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRP 574 (579)
Q Consensus 497 ~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v-~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~ 574 (579)
+ ...+..++.|||||.| +|++++.| ||+ ++||| |||||||++|++.|||++
T Consensus 413 -----------~--~~~n~~~p~~rDTV~V~ppg~~v~i--rf~------------adnPG~W~~HCHil~H~~~GM~~~ 465 (503)
T 1hfu_A 413 -----------S--STYNFVNPVKRDVVSLGVTGDEVTI--RFV------------TDNPGPWFFHCHIEFHLMNGLAIV 465 (503)
T ss_dssp -----------C--CCCCCSSBCEESEEECCSTTCEEEE--EEE------------CCSCEEEEEEESSHHHHHTTCEEE
T ss_pred -----------C--CccccCCCCeeeeEEecCCCceEEE--EEE------------cCCCeeeeEecCchhHhhCCCeEE
Confidence 1 1234567899999999 89998766 665 35999 999999999999999999
Q ss_pred EEEc
Q 008071 575 LKLI 578 (579)
Q Consensus 575 ~~V~ 578 (579)
|.|.
T Consensus 466 ~~v~ 469 (503)
T 1hfu_A 466 FAED 469 (503)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9873
No 13
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=100.00 E-value=8.7e-78 Score=666.74 Aligned_cols=427 Identities=19% Similarity=0.230 Sum_probs=312.6
Q ss_pred eeEEEeEEEEEEEecCCCCC-cceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPP-TPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGI 143 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~-~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~ 143 (579)
.+++|++.+.+.++.++... ..+|+|| |++|||+|||++||+|+|+|+|+|+..
T Consensus 34 ~~~~l~~~~~~~~~~~~g~~~~~~~~~N-----g~~PGP~i~~~~GD~v~v~v~N~l~~~-------------------- 88 (559)
T 2q9o_A 34 QSYVFNLTEVDNWMGPDGVVKEKVMLIN-----GNIMGPNIVANWGDTVEVTVINNLVTN-------------------- 88 (559)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEET-----TBSSCCCEEEETTCEEEEEEEEECSSC--------------------
T ss_pred EEEEEEEEEeEeeECCCCccceEEEEEC-----CcccCCcEEEeCCCEEEEEEEeCCCCC--------------------
Confidence 47888888887667665556 8899997 999999999999999999999999542
Q ss_pred CeEEeeCCCCCC--CCCCCCCCccccccccCC-CCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 144 PTVVHLHGGIDE--PESDGNANSWFTAGFKEK-GPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 144 ~t~iH~HG~~~~--~~~DG~p~~~~t~~~i~P-G~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
+|+|||||+++. +.+||+|+ ++||+|.| |++| +|+|+++ ++||||||||.. .|+++||+|+|||+++
T Consensus 89 ~tsiHwHG~~~~~~~~~DG~~~--~tq~~I~P~G~~~---~Y~f~~~-q~GT~wYH~H~~----~q~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 89 GTSIHWHGIXQKDTNLHDGANG--VTECPIPPKGGQR---TYRWRAR-QYGTSWYHSHFS----AQYGNGVVGTIQINGP 158 (559)
T ss_dssp CBCEEEETCCCTTCGGGSCCBT--TTBCCBCTTTEEE---EEEEECC-SCEEEEEEECST----TGGGGTCEEEEEEECC
T ss_pred CceEEcCCCccCCCCCcCCCCc--cccCccCCCCCeE---EEEEECC-CCEEEEEEEccc----chhcCCceEEEEecCC
Confidence 899999999995 46999998 89999999 9999 9999998 799999999984 6999999999999976
Q ss_pred CCCCCCCCCCCCCCce-eEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCccc---------CeEEecC-
Q 008071 221 DVETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAW---------PRMTVRR- 289 (579)
Q Consensus 221 ~~~~~~~lp~~~~~e~-~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~---------P~~~v~~- 289 (579)
+ . ..|+.|. +|+|+||+++.++++.+...+ ..+..++.++|||+.. +.++|++
T Consensus 159 ~-~------~~~d~d~~~l~l~Dw~~~~~~~~~~~~~~---------~~~~~~d~~liNG~~~~~~~~~g~~~~~~v~~g 222 (559)
T 2q9o_A 159 A-S------LPYDIDLGVFPITDYYYRAADDLVHFTQN---------NAPPFSDNVLINGTAVNPNTGEGQYANVTLTPG 222 (559)
T ss_dssp C-S------SCCSEEEEEEEEEEECSSCHHHHHHHHTT---------SCCCCBSEEEETTBCBCTTTCCBCCCEEEECTT
T ss_pred C-c------CCCcccceEEEEeccccCCHHHHhhhhhc---------CCCCccceeEECCccccCcCCCCCceEEEEcCC
Confidence 5 2 1256777 999999998877665332111 0123578999999984 5799988
Q ss_pred cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCC--CCCCC
Q 008071 290 RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDA--PYPYP 367 (579)
Q Consensus 290 ~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~--~~~~~ 367 (579)
++|||||||+|+.+.+.|+| +||+|+||++||.++ +|+.+++|.|+|||||||+|++++.+| .|+|++.. ...
T Consensus 223 ~~~RlRliNa~~~~~~~~~i-~gh~~~vi~~DG~~~-~p~~~~~l~l~pgeR~dvlv~~~~~~g-~y~i~a~~~~~~~-- 297 (559)
T 2q9o_A 223 KRHRLRILNTSTENHFQVSL-VNHTMTVIAADMVPV-NAMTVDSLFLAVGQRYDVVIDASRAPD-NYWFNVTFGGQAA-- 297 (559)
T ss_dssp CEEEEEEEECCSSCCEEEEE-TTBCEEEEEETTEEE-EEEEESCEEECTTCEEEEEEECCSCSS-EEEEEEECCGGGT--
T ss_pred CEEEEEEEecCCCceEEEEE-CCCceEEEecCCccc-CceEeCeEEEccEEEEEEEEECCCCCC-cEEEEEEeccccc--
Confidence 89999999999999999999 699999999999999 899999999999999999999988655 78887754 111
Q ss_pred CCCCCCCCCCccEEEEEecCCCCCCCC--CC---------CCCCCCCCCCCCC----CccceEEEEEeeecCCCCcceEE
Q 008071 368 SGDPVNDANGKVMKFIIKKNHELDTWR--VP---------EKLIKYPSPNPSS----ASRTRYIAMYEYTSDIDEPTHLF 432 (579)
Q Consensus 368 ~g~~~~~~~~~v~~~~v~~~~~~~~~~--~P---------~~L~~~~~~~~~~----~~~~r~~~l~~~~~~~g~~~~~~ 432 (579)
.+........++++| .+.....+.. .+ ..|.|+.+...+. ....+++.+.... ..+....|+
T Consensus 298 ~~~~~~~~~~ail~y--~~~~~~~P~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 374 (559)
T 2q9o_A 298 CGGSLNPHPAAIFHY--AGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDL-TGTPLFVWK 374 (559)
T ss_dssp TCCBSSSCCEEEEEE--TTSCCSCCCCCCCCCCCCTTCCCSCCCBSSCCBCCCTTCCCCGGGEEEEEEEC-SSSSSCEEE
T ss_pred cCCCCCCceeEEEEE--CCCCCCCCCCCCCcCCCcccccccccccCCCCCCCCcccccceeEEEEEEeec-CCCceEEEE
Confidence 011111122355555 3322111110 00 1233332211111 1123445443221 122345799
Q ss_pred EcCeecCC----Ccc----------------ccc-CCCCeEEEEEEeCC----CCCceeeeeeccEEEEeEechhhhHHh
Q 008071 433 INGKSYEE----PVT----------------ETP-KAGTSEVWNVINLT----EDNHPLHIHLGLFVVLDQRELVKLEEF 487 (579)
Q Consensus 433 iNg~~~~~----~~~----------------~~~-~~G~~~~w~l~N~~----~~~HP~HlHg~~Fqvl~~~~~~~~~~~ 487 (579)
|||++|.. |.. +.+ +.+++|+|.+.|.+ .+.||||||||+||||+++....++.
T Consensus 375 iNg~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~g~~~~~~~- 453 (559)
T 2q9o_A 375 VNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAAS- 453 (559)
T ss_dssp ETTBCCCCCTTSCHHHHHHHTCCCCCGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEESCCCCTTS-
T ss_pred ECCEecccCCCCCcHhHhhcCCccCCCCceEEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEeccccccccc-
Confidence 99999853 211 122 45789999999976 68999999999999999964100000
Q ss_pred hhhhhccCCcccccccccccC-cccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecccc
Q 008071 488 KACMTKYNDAIKCHISKYARG-KKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLD 565 (579)
Q Consensus 488 ~~~~~~~~d~~~~~~~~~~~G-~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~ 565 (579)
.....|... .+...+..++.|||||.|++++++.| ||+ ++||| |||||||++
T Consensus 454 ------------~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~I--rF~------------adNPG~W~~HCHil~ 507 (559)
T 2q9o_A 454 ------------QQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLL--AFR------------TDNPGAWLFHCHIAW 507 (559)
T ss_dssp ------------CCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEE--EEE------------CCSCEEEEEEECCHH
T ss_pred ------------ccccccCccccccccccCCCCccceEEccCCccEEE--EEE------------cCCCeeEEEEecchh
Confidence 000000000 00223456789999999999997755 776 46999 999999999
Q ss_pred ccccCccccEEE
Q 008071 566 HEDNVMMRPLKL 577 (579)
Q Consensus 566 Hed~GMm~~~~V 577 (579)
|+|.|||++|.|
T Consensus 508 H~~~GM~~~~~v 519 (559)
T 2q9o_A 508 HVSGGLSVDFLE 519 (559)
T ss_dssp HHHTTCEEEEEE
T ss_pred HhhcCCeEEEEE
Confidence 999999999976
No 14
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=100.00 E-value=4.1e-77 Score=661.54 Aligned_cols=422 Identities=22% Similarity=0.273 Sum_probs=309.2
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLP-SKHILPWDPTIPTAIPRKKKGI 143 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~-~~~~~~~d~~~~~~~p~~~~~~ 143 (579)
.+|++++.+. .+.++...+.+|+|| |++|||+|||++||+|+|+|+|+|+ +
T Consensus 4 ~~y~~~v~~~--~~~~dg~~~~~~~~N-----g~~PGP~I~~~~GD~v~v~v~N~l~~~--------------------- 55 (552)
T 1aoz_A 4 RHYKWEVEYM--FWAPNCNENIVMGIN-----GQFPGPTIRANAGDSVVVELTNKLHTE--------------------- 55 (552)
T ss_dssp EEEEEEEEEE--EECTTSSCEEEEEET-----TBSSCCCEEEETTCEEEEEEEECCSSC---------------------
T ss_pred EEEEEEEEEE--EEcCCCceEEEEEEC-----CccCCCcEEEeCCCEEEEEEEeCCCCC---------------------
Confidence 4677777776 456777789999997 9999999999999999999999998 5
Q ss_pred CeEEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 144 PTVVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 144 ~t~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
+|+|||||+++++. +||+|+ ++||+|+||++| +|+|+++ ++||||||||.. .|+++||+|+|||++++
T Consensus 56 ~tsiHwHGl~~~~~~~~DGv~~--vtq~~I~PG~s~---tY~f~~~-~~GT~wYHsH~~----~q~~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 56 GVVIHWHGILQRGTPWADGTAS--ISQCAINPGETF---FYNFTVD-NPGTFFYHGHLG----MQRSAGLYGSLIVDPPQ 125 (552)
T ss_dssp CBCEEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECC-SCEEEEEEECST----TTGGGTCEEEEEEECCT
T ss_pred CeeEEeCCCccCCCcccCCCcc--cccCCcCCCCeE---EEEEECC-CCEEEEEEECch----hHHhccCeeeEEEeCCc
Confidence 89999999999876 999999 899999999999 9999995 999999999984 69999999999999765
Q ss_pred CCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC------------------
Q 008071 222 VETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP------------------ 283 (579)
Q Consensus 222 ~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P------------------ 283 (579)
+... |..+++|++|+|+||++.....+..... ..+ ..|. -.++.++|||+..+
T Consensus 126 -~~~~--~~~~d~e~~l~l~Dw~~~~~~~~~~~~~-~~~---~~~~--~~~~~~liNG~~~~~c~~~~~~~~~~~~c~~~ 196 (552)
T 1aoz_A 126 -GKKE--PFHYDGEINLLLSDWWHQSIHKQEVGLS-SKP---IRWI--GEPQTILLNGRGQFDCSIAAKYDSNLEPCKLK 196 (552)
T ss_dssp -TCCC--SSCCSEEEEEEEEEECSSCHHHHHHHTT-SSS---CCCC--CSCSEEEETTBCCSSSBTTGGGCTTSCBCCCC
T ss_pred -ccCC--CCCCCccceEEeecccCCCHHHHHhhhh-ccc---ccCC--CCCCeEEECCccccCcccCccccccccccccc
Confidence 3222 2234789999999997654333211100 000 0111 13689999999866
Q ss_pred --------eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCc
Q 008071 284 --------RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSD 354 (579)
Q Consensus 284 --------~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~ 354 (579)
.++|++ ++|||||||+|+.+.+.|+| +||+|+||++||+++ +|+.+++|.|+|||||||+|++++...+
T Consensus 197 ~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i-~gh~~~vi~~DG~~~-~P~~~~~l~i~pgqR~dvlv~~~~~~~g 274 (552)
T 1aoz_A 197 GSESCAPYIFHVSPKKTYRIRIASTTALAALNFAI-GNHQLLVVEADGNYV-QPFYTSDIDIYSGESYSVLITTDQNPSE 274 (552)
T ss_dssp SCSTTSCCCEEECTTCEEEEEEEECCSSCEEEEEE-TTCCEEEEEETTEEE-EEEEESCEEECTTCEEEEEEECCSCTTC
T ss_pred CCCCCCceEEEEcCCCEEEEEEEcccccceEEEEE-cCcEEEEEEECCccc-CceEEeEEEEcCCcEEEEEEEcCCCCCC
Confidence 699998 89999999999999999999 699999999999999 8999999999999999999999543223
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCC-CC-CCC---CCC----------CCCCCCC--CCCCCCccceEEE
Q 008071 355 VAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHE-LD-TWR---VPE----------KLIKYPS--PNPSSASRTRYIA 417 (579)
Q Consensus 355 ~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~-~~-~~~---~P~----------~L~~~~~--~~~~~~~~~r~~~ 417 (579)
+|+|+..... .+ .......++++| .+... .. ... +|. .|+++.. +.......+|++.
T Consensus 275 ~y~i~~~~~~---~~-~~~~~~~ail~y--~~~~~~~~p~~~~p~~p~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 348 (552)
T 1aoz_A 275 NYWVSVGTRA---RH-PNTPPGLTLLNY--LPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIF 348 (552)
T ss_dssp CEEEEEEEES---SC-CCSCCEEEEEEE--TTSCTTSCCSSCCCCCCCTTCHHHHHHHHTTCCBCTTCCCCCSSCSEEEE
T ss_pred CEEEEEEccc---CC-CCCccEEEEEEE--CCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCcEEEE
Confidence 7888765321 00 011122345554 33321 11 111 111 0222211 1112223455655
Q ss_pred EEeeecCCCCcceEEEcCeecCCCc--------------------------------------------ccccCCCCeEE
Q 008071 418 MYEYTSDIDEPTHLFINGKSYEEPV--------------------------------------------TETPKAGTSEV 453 (579)
Q Consensus 418 l~~~~~~~g~~~~~~iNg~~~~~~~--------------------------------------------~~~~~~G~~~~ 453 (579)
|............|+|||++|..+. .+.++.|++++
T Consensus 349 l~~~~~~~~~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~v~ 428 (552)
T 1aoz_A 349 LLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVD 428 (552)
T ss_dssp EEEEEEEETTEEEEEETTEEECCCSSCHHHHHHTTCTTSSCCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCEEE
T ss_pred EEEeeccCCCeEEEEECCCccCCCCCCHHHHHhhcCccccccCCCccccccccccccccccccccccceEEEecCCCEEE
Confidence 5432211112456999999884210 13458999999
Q ss_pred EEEEeCCC------CCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeC
Q 008071 454 WNVINLTE------DNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMT 527 (579)
Q Consensus 454 w~l~N~~~------~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~ 527 (579)
|+|+|.+. +.||||||||+||||+++.+ .|+.. . +...+..++.|||||.|+
T Consensus 429 ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G----~~~~~-----------------~-~~~~n~~~p~~RDTv~vp 486 (552)
T 1aoz_A 429 VILQNANMMKENLSETHPWHLHGHDFWVLGYGDG----KFSAE-----------------E-ESSLNLKNPPLRNTVVIF 486 (552)
T ss_dssp EEEEECCCSSTTCCCCEEEEETTCCEEEEEEEES----SCCGG-----------------G-GGGSCCSSCCEESEEEEC
T ss_pred EEEeCCcccccccCCCCCEEEcCCceEEEecccC----ccCcc-----------------c-ccccccCCCCccCeEEeC
Confidence 99999874 46999999999999998633 11110 0 022345678999999999
Q ss_pred CCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 528 PGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 528 p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
|++++.| ||+ ++||| |||||||++|++.|||++|.+
T Consensus 487 p~g~v~I--rf~------------aDNPG~W~~HCHi~~H~~~GM~~~~~~ 523 (552)
T 1aoz_A 487 PYGWTAI--RFV------------ADNPGVWAFHCHIEPHLHMGMGVVFAE 523 (552)
T ss_dssp TTEEEEE--EEE------------CCSCEEEEEEESSHHHHHTTCEEEEEE
T ss_pred CCceEEE--EEE------------cCCCeEEEEEeeehhHhhCCCeEEEEe
Confidence 9998766 666 46999 999999999999999999987
No 15
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=100.00 E-value=3.1e-75 Score=635.50 Aligned_cols=411 Identities=18% Similarity=0.254 Sum_probs=304.6
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++.+. .+.++.-...+|+|| |++|||+||+++||+|+|+++|+|++.. ...+|
T Consensus 6 ~~~l~i~~~--~~~pdg~~~~~~~~N-----G~~PGP~I~~~~GD~v~v~v~N~l~~~~----------------~~~~t 62 (495)
T 3t6v_A 6 VTDLHIVNA--DIVPDGFVRPAVNAG-----GTFPGPVIAGNVGDNFQIVTFNQLIECS----------------MLVDT 62 (495)
T ss_dssp EEEEEEEEE--EECTTSCCEEEEEET-----TSSSCCEEEEETTCEEEEEEEECCCCGG----------------GCSCB
T ss_pred eEEEEEEEE--EEcCCCceEEEEEEC-----CcccCCeEEEECCcEEEEEEEECCCCcc----------------CCCce
Confidence 466666676 345555578999997 9999999999999999999999998510 01279
Q ss_pred EEeeCCCCCC--CCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDE--PESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~--~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++. +.+||+|+ +|||+|+||++| +|+|++++++||||||||.. .|+++||+|+|||++|++.
T Consensus 63 siHwHGl~~~~~~~~DGv~~--vtq~pI~PG~sf---tY~f~~~~~~GT~wYHsH~~----~q~~~GL~G~lIV~~~~~~ 133 (495)
T 3t6v_A 63 SIHWHGEFQKGTNWADGPAF--ITQCPIIVGNSF---SYNFNVPGMAGTYWYHSHLT----TQYCDGLRGPFVVYDPNDP 133 (495)
T ss_dssp CEEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECTTCCEEEEEEECST----TGGGGTCEEEEEEECTTCT
T ss_pred EEEeCCcccCCCccccCCCc--cccCCCCCCCeE---EEEEEeCCCCceeeeeccch----hHHhcCceEEEEEcCcccc
Confidence 9999999986 45999998 999999999999 99999976999999999995 5999999999999987622
Q ss_pred CCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc----------cCeEEecC-cE
Q 008071 224 TPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA----------WPRMTVRR-RK 291 (579)
Q Consensus 224 ~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~----------~P~~~v~~-~~ 291 (579)
...+..+ +.|++|+|+||+++.++.+ .+. ....+|.++|||+. .+.++|++ ++
T Consensus 134 --~~~~~~~d~~e~~l~l~Dw~~~~~~~~----~~~---------~p~~~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~ 198 (495)
T 3t6v_A 134 --DANLYDVDDDTTIITLADWYHVLAKEM----GAG---------GAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKR 198 (495)
T ss_dssp --TGGGCSBCSGGGEEEEEEECSSCGGGS----CSS---------SCCCCSEEEETTBCCBSSSCCCCCCCEEEECTTCE
T ss_pred --ccccCCCCCceeEEEEecccCCchhhh----ccC---------CCCCCcEEEECCcCcCCCCcccCCceEEEEcCCCE
Confidence 1111111 3567999999987655432 010 11257899999984 36799999 89
Q ss_pred EEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCC
Q 008071 292 YRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDP 371 (579)
Q Consensus 292 ~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~ 371 (579)
|||||||+|+.+.+.|+| +||+|+||++||.++ +|+.+++|.|+|||||||+|++++..| +|+++....... .+ .
T Consensus 199 ~RlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~P~~~~~l~i~pGqR~dvlv~~~~~~g-~y~i~a~~~~~~-~~-~ 273 (495)
T 3t6v_A 199 YRMRLVSISCDPNYDFSI-DGHDMTIIETDGVDS-QELTVDEIQIFAAQRYSFVLNANQPVG-NYWIRANPNSGG-EG-F 273 (495)
T ss_dssp EEEEEEECCSSCCEEEEE-TTCCEEEEEETTEEE-EEEEESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSSS-CS-C
T ss_pred EEEEEEecCCCeeEEEEE-CCCeEEEEEeCCccc-CCEEeeeEEEcCceEEEEEEECCCCCc-eEEEEEecccCc-cc-c
Confidence 999999999999999999 699999999999998 899999999999999999999998755 888876432100 01 0
Q ss_pred CCCCCCccEEEEEecCCCCCC-CCC---------CCCCCCCCCCCCC----CCccceEEEEEeeecCCCCcceEEEcCee
Q 008071 372 VNDANGKVMKFIIKKNHELDT-WRV---------PEKLIKYPSPNPS----SASRTRYIAMYEYTSDIDEPTHLFINGKS 437 (579)
Q Consensus 372 ~~~~~~~v~~~~v~~~~~~~~-~~~---------P~~L~~~~~~~~~----~~~~~r~~~l~~~~~~~g~~~~~~iNg~~ 437 (579)
......+|++| .+.....+ ... ...|.|+.....+ ....++++.+.-... ...|+|||++
T Consensus 274 ~~~~~~ail~Y--~~~~~~~p~~~~~~~~~~~~~~~~L~p~~~~~~p~~~~~~~~d~~~~l~~~~~----~~~w~iNg~s 347 (495)
T 3t6v_A 274 DGGINSAILRY--DGATTADPVTVASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFA----CGNFVINGVS 347 (495)
T ss_dssp GGGTTEEEEEE--TTSCSSCCCCCCCSSCSSBCCGGGCCBSSCCCCSSCSSTTCSSEEEECCEEEE----TTEEEETTBC
T ss_pred CCCceEEEEEE--CCCCCCCCCCCCCCCCccccccccccccccccCCCccCCCCCcEEEEEEEEec----CcEEEEcCEe
Confidence 01122355555 33321111 000 1134444321111 112234443322111 2369999999
Q ss_pred cCCCc----------------------ccccCCCCeEEEEEE-eCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhcc
Q 008071 438 YEEPV----------------------TETPKAGTSEVWNVI-NLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKY 494 (579)
Q Consensus 438 ~~~~~----------------------~~~~~~G~~~~w~l~-N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~ 494 (579)
|..+. .+.++.|++++|.|. |.+.+.||||||||+|+||+..
T Consensus 348 ~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHGh~F~vl~~~--------------- 412 (495)
T 3t6v_A 348 FTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESA--------------- 412 (495)
T ss_dssp CCCCSSCHHHHHHTTCCSSTTSSSTTSEEEECTTCEEEEEEECCSSSCCCEEEETTCCEEEEECT---------------
T ss_pred cCCCCCcchhhhhcCCcCcccccCCcceEEecCCCEEEEEEccCCCCCCcceeecCCcEEEEecC---------------
Confidence 96421 145789999999998 6777899999999999999762
Q ss_pred CCcccccccccccCcccccccccCcccceEEeCC-CcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCcc
Q 008071 495 NDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTP-GYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMM 572 (579)
Q Consensus 495 ~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p-~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm 572 (579)
|. ...+..+|.|||||.|++ |+++.| ||+ ++||| |||||||++|++.|||
T Consensus 413 -------------g~-~~~n~~~P~~rDtv~v~~~g~~~~i--rf~------------adnPG~W~~HCHi~~H~~~Gm~ 464 (495)
T 3t6v_A 413 -------------SN-STSNYDDPIWRDVVSIGGVGDNVTI--RFC------------TDNPGPWFLHCHIDWHLDAGFA 464 (495)
T ss_dssp -------------TC-CCCCSSSCCEESEEECCSTTCEEEE--EEE------------CCSCEEEEEEESCHHHHHTTCE
T ss_pred -------------CC-CCcccCCCCCccEEEcCCCCcEEEE--EEE------------cCCCeeEEEEecchhHhhcCCe
Confidence 21 234456789999999997 887655 777 57999 9999999999999999
Q ss_pred ccEEE
Q 008071 573 RPLKL 577 (579)
Q Consensus 573 ~~~~V 577 (579)
.+|.+
T Consensus 465 ~~~~e 469 (495)
T 3t6v_A 465 IVFAE 469 (495)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98853
No 16
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=100.00 E-value=9.8e-76 Score=647.05 Aligned_cols=414 Identities=19% Similarity=0.239 Sum_probs=311.1
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+|++++.+.. +.++.....+|+|| |++|||+||+++||+|+|+++|+|+.+ +
T Consensus 68 ~~~~l~v~~~~--~~pdG~~~~~~~~N-----G~~PGP~I~~~~GD~v~V~v~N~l~~~--------------------~ 120 (580)
T 3sqr_A 68 REYWLSVENST--ITPDGYTRSAMTFN-----GTVPGPAIIADWGDNLIIHVTNNLEHN--------------------G 120 (580)
T ss_dssp EEEEEEEEEEE--ECSSSBCEEEEEET-----TBSSCCCEEEETTCEEEEEEEECCSSC--------------------C
T ss_pred EEEEEEEEEEE--ecCCCeEEEEEEEC-----CccCCceEEEeCCCEEEEEEEECCCCC--------------------c
Confidence 57888888875 44455578999997 999999999999999999999999842 8
Q ss_pred eEEeeCCCCCC--CCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCC
Q 008071 145 TVVHLHGGIDE--PESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDV 222 (579)
Q Consensus 145 t~iH~HG~~~~--~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~ 222 (579)
|+|||||+++. +.+||+|+ +|||+|+||++| +|+|+++ ++||||||||.. .|+++||+|+|||++|+
T Consensus 121 tsIHwHGl~~~~t~~~DGvp~--vTq~pI~PG~sf---tY~f~~~-q~GT~WYHsH~~----~q~~~GL~G~lIV~~p~- 189 (580)
T 3sqr_A 121 TSIHWHGIRQLGSLEYDGVPG--VTQCPIAPGDTL---TYKFQVT-QYGTTWYHSHFS----LQYGDGLFGPLIINGPA- 189 (580)
T ss_dssp BCEEETTCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECC-CCEEEEEEECST----TGGGGTCEEEEEEECCC-
T ss_pred ceEEecccccCCCccccCCCc--cccCCCCCCCeE---EEEEECC-CCcceEEeeccc----ccccCcCEEEEEeeCcc-
Confidence 99999999987 46999999 999999999999 9999998 899999999994 69999999999999776
Q ss_pred CCCCCCCCCCCCce-eEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCccc-----------------Ce
Q 008071 223 ETPLRLPSGDEFDR-PLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAW-----------------PR 284 (579)
Q Consensus 223 ~~~~~lp~~~~~e~-~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~-----------------P~ 284 (579)
+. .||.|. +|+|+||+++..+++...... .....+|.++|||+.. +.
T Consensus 190 ~~------~yD~d~~~l~l~Dw~~~~~~~~~~~~~~---------~~~~~~d~~liNG~~~~~c~~~~~~~~~~~~~~~~ 254 (580)
T 3sqr_A 190 TA------DYDEDVGVIFLQDWAHESVFEIWDTARL---------GAPPALENTLMNGTNTFDCSASTDPNCVGGGKKFE 254 (580)
T ss_dssp SS------CCSEEEEEEEEEEECSSCHHHHHHHHTT---------SCCCCBSEEEETTBCCCCCTTCCCTTBCCCCCCCE
T ss_pred cC------CCCccceEEEEEEEecCCHHHHHHHHhc---------cCCCCCceEEECCcccCCCccccccccccCCCcee
Confidence 21 257787 999999987765544221110 0123578999999964 57
Q ss_pred EEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCC
Q 008071 285 MTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAP 363 (579)
Q Consensus 285 ~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~ 363 (579)
+.|++ ++|||||||+|..+.+.|+| +||+|+||++||.++ +|+.+++|.|+|||||||+|++++.+| +|+|++...
T Consensus 255 ~~v~~G~~yRlRlINa~~~~~~~~~i-~gh~~~VIa~DG~~v-~P~~~~~l~i~pGqRydVlv~a~~~~g-~Y~i~a~~~ 331 (580)
T 3sqr_A 255 LTFVEGTKYRLRLINVGIDSHFEFAI-DNHTLTVIANDLVPI-VPYTTDTLLIGIGQRYDVIVEANAAAD-NYWIRGNWG 331 (580)
T ss_dssp EECCTTCEEEEEEEECCSSCCEEEEE-TTCCEEEEEETTEEE-EEEEESSEEECTTCEEEEEEECCSCSS-EEEEECCCC
T ss_pred EEEcCCCEEEEEEEeccCCceeeEEe-CCceEEEEEeCCccC-CceEeeEEEEccceEEEEEEEeCCCCC-eEEEEEecc
Confidence 88988 89999999999999999999 699999999999999 899999999999999999999998754 899987653
Q ss_pred CCCCCCCCCCCCCCccEEEEEecCCCCCCCC----CC--------CCCCCCCCCCCC-CCccceEEEEEeeecCCCCcce
Q 008071 364 YPYPSGDPVNDANGKVMKFIIKKNHELDTWR----VP--------EKLIKYPSPNPS-SASRTRYIAMYEYTSDIDEPTH 430 (579)
Q Consensus 364 ~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~----~P--------~~L~~~~~~~~~-~~~~~r~~~l~~~~~~~g~~~~ 430 (579)
...... .......+|++| .+.....+.. .. ..|.|+.+...+ ....++.+.+. .+....
T Consensus 332 ~~~~~~-~~~~~~~aiL~Y--~~~~~~~P~~~~~~~~~~~~~~~~~~L~P~~~~~~~~~~~~~~~l~~~-----~~~~~~ 403 (580)
T 3sqr_A 332 TTCSTN-NEAANATGILRY--DSSSIANPTSVGTTPRGTCEDEPVASLVPHLALDVGGYSLVDEQVSSA-----FTNYFT 403 (580)
T ss_dssp TTTSCB-TTGGGCEEEEES--STTCCCCCCCCCCCCCCCSCCSCGGGCCBSSCCBCCSEEEEEEEEEEE-----ESSSEE
T ss_pred cccCcc-CCCCceEEEEEE--CCCCCCCCCCCCCCccchhhcccccccccCCCCCCCCccceEEEEEec-----cCCcee
Confidence 210000 001123456665 3322111100 00 124443322221 12223333331 234567
Q ss_pred EEEcCeecCC----Ccc----------------ccc----CCCCeEEEEEEeCC--CCCceeeeeeccEEEEeEechhhh
Q 008071 431 LFINGKSYEE----PVT----------------ETP----KAGTSEVWNVINLT--EDNHPLHIHLGLFVVLDQRELVKL 484 (579)
Q Consensus 431 ~~iNg~~~~~----~~~----------------~~~----~~G~~~~w~l~N~~--~~~HP~HlHg~~Fqvl~~~~~~~~ 484 (579)
|+|||.+|.. |.. ..+ +.|++++|.|.|.+ .+.||||||||+|+||+++.+
T Consensus 404 w~iN~~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~VeiVi~n~~~~~~~HP~HLHGh~F~vv~~g~G--- 480 (580)
T 3sqr_A 404 WTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETD--- 480 (580)
T ss_dssp EEETTBCCCCCTTSCHHHHHHTTCCCCCGGGCEEEECC----CCEEEEEEEECSSSCCCEEEEESSCCEEEEEEESS---
T ss_pred EEECCEecccCCCCCchhhhhcCCccCCCCcceeecccccCCCcEEEEEEeCCCccccceeeEecCceEEEEecCCC---
Confidence 9999999842 211 111 46999999999987 789999999999999999754
Q ss_pred HHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecc
Q 008071 485 EEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHV 563 (579)
Q Consensus 485 ~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHi 563 (579)
.|+.. . + +...++.+|.|||||.|+|++++.| ||+ ++||| |+|||||
T Consensus 481 -~f~~~----~------------~-~~~~nl~nP~~rDTv~v~~~g~~~i--rf~------------adNPG~W~~HCHi 528 (580)
T 3sqr_A 481 -VFNSD----E------------S-PAKFNLVNPPRRDVAALPGNGYLAI--AFK------------LDNPGSWLLHCHI 528 (580)
T ss_dssp -CCCTT----T------------S-GGGCCCBSCCEESEEEECTTSEEEE--EEE------------SCSCEEEEEEECS
T ss_pred -ccCcc----c------------c-ccccccCCCceeeEEEeCCCceEEE--EEE------------cCCCeeeEEEECc
Confidence 22210 0 1 1235677899999999999997755 777 57999 9999999
Q ss_pred ccccccCccccEEE
Q 008071 564 LDHEDNVMMRPLKL 577 (579)
Q Consensus 564 l~Hed~GMm~~~~V 577 (579)
++|++.|||.+|.+
T Consensus 529 ~~H~~~Gm~~~~~e 542 (580)
T 3sqr_A 529 AWHASEGLAMQFVE 542 (580)
T ss_dssp HHHHHTTCEEEEEE
T ss_pred HHHhhCCCcEEEEE
Confidence 99999999999875
No 17
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=100.00 E-value=7.3e-75 Score=632.69 Aligned_cols=410 Identities=19% Similarity=0.260 Sum_probs=304.0
Q ss_pred eEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 66 KLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 66 ~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++++++.+. .+.++.....+|+|| |++|||+||+++||+|+|+|+|+|++.. ...+|
T Consensus 5 ~~~l~v~~~--~~~pdG~~~~~~~~N-----G~~PGP~I~~~~GD~v~V~v~N~l~~~~----------------~~~~t 61 (499)
T 3pxl_A 5 VADLTITDA--AVSPDGFSRQAVVVN-----GVTPGPLVAGNIGDRFQLNVIDNLTNHT----------------MLKST 61 (499)
T ss_dssp EEEEEEEEE--EECTTSCCEEEEEET-----TBSSCCCEEEETTCEEEEEEEECCCCGG----------------GCSCB
T ss_pred eEEEEEEEE--EEcCCCcEEEEEEEC-----CcccCCeEEEeCCCEEEEEEEECCCCcc----------------CCCce
Confidence 466666666 455555578999997 9999999999999999999999998510 01279
Q ss_pred EEeeCCCCCC--CCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCC
Q 008071 146 VVHLHGGIDE--PESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVE 223 (579)
Q Consensus 146 ~iH~HG~~~~--~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~ 223 (579)
+|||||+++. +.+||+|+ +|||+|+||++| +|+|++++++||||||||.. .|+++||+|+|||++|++.
T Consensus 62 siHwHGl~~~~~~~~DGv~~--vtq~pI~PG~s~---tY~f~~~~~~GT~wYHsH~~----~q~~~GL~G~lIV~~~~~~ 132 (499)
T 3pxl_A 62 SIHWHGFFQHGTNWADGPAF--INQCPISPGHSF---LYDFQVPDQAGTFWYHSHLS----TQYCDGLRGPFVVYDPNDP 132 (499)
T ss_dssp CEEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECSSCCEEEEEEECST----TGGGGTCEEEEEEECTTCT
T ss_pred EEEeCCcccCCCccccCCCc--cccCCCCCCCeE---EEEEEcCCCCceeeeeccch----hHHhccceeEEEEcCCccc
Confidence 9999999886 45999998 999999999999 99999966999999999994 5999999999999987621
Q ss_pred CCCCCCCCC-CCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc---------cCeEEecC-cEE
Q 008071 224 TPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA---------WPRMTVRR-RKY 292 (579)
Q Consensus 224 ~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~---------~P~~~v~~-~~~ 292 (579)
...+..+ +.|++|+++||+++.+++. +. ....+|.++|||+. .+.++|++ ++|
T Consensus 133 --~~~~~~~d~~~~~l~l~Dw~~~~~~~~-----~~---------~p~~~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~ 196 (499)
T 3pxl_A 133 --HASRYDVDNDDTVITLADWYHTAAKLG-----PR---------FPGGADATLINGKGRAPSDSVAELSVIKVTKGKRY 196 (499)
T ss_dssp --TGGGCSBCSGGGEEEEEEECSSCTTTS-----CS---------SCSSCSEEEETTBCCCTTCTTCCCCEEEECTTCEE
T ss_pred --ccccCCCCCceEEEEEEcccCCccccc-----cC---------CCCCCcEEEECCCCcCCCCCCCCcceEEEcCCCEE
Confidence 1111111 3467999999987655431 11 12357999999984 46899999 899
Q ss_pred EEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCC
Q 008071 293 RFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPV 372 (579)
Q Consensus 293 RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~ 372 (579)
||||||+|+.+.+.|+| +||+|+||++||.++ +|+.+++|.|+|||||||+|++++..| +|++++...... .+ ..
T Consensus 197 RlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~P~~~~~l~i~pGqR~dvlv~~~~~~g-~y~i~a~~~~~~-~~-~~ 271 (499)
T 3pxl_A 197 RFRLVSLSCNPNHTFSI-DGHNLTIIEVDSVNS-QPLEVDSIQIFAAQRYSFVLDANQAVD-NYWIRANPNFGN-VG-FD 271 (499)
T ss_dssp EEEEEECCSSCCEEEEE-TTBCEEEEEETTEEE-EEEEESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSSS-CS-CG
T ss_pred EEEEEecCCCeeEEEEE-CCCeEEEEEECCccc-CceEeeeEEECCCcEEEEEEECCCCCc-eEEEEEecccCc-cc-cC
Confidence 99999999999999999 699999999999998 899999999999999999999998755 888876432100 01 00
Q ss_pred CCCCCccEEEEEecCCCCCCC-CC--------CCCCCCCCCCCCC----CCccceEEEEEeeecCCCCcceEEEcCeecC
Q 008071 373 NDANGKVMKFIIKKNHELDTW-RV--------PEKLIKYPSPNPS----SASRTRYIAMYEYTSDIDEPTHLFINGKSYE 439 (579)
Q Consensus 373 ~~~~~~v~~~~v~~~~~~~~~-~~--------P~~L~~~~~~~~~----~~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~ 439 (579)
.....++++| .+....++. .. ...|.|+.....+ ....++++.+.-... ...|+|||++|.
T Consensus 272 ~~~~~ail~Y--~~~~~~~p~~~~~~~~~~~~~~~L~p~~~~~~p~~~~~~~~d~~~~l~~~~~----~~~w~iNg~s~~ 345 (499)
T 3pxl_A 272 GGINSAILRY--DGAPAVEPTTNQTTSVKPLNEVDLHPLVSTPVPGAPSSGGVDKAINMAFNFN----GSNFFINGASFV 345 (499)
T ss_dssp GGTTEEEEEE--TTSCSSCCCCCCCCCSSBCCGGGCCBSSCCCCSSCSSTTCSSEEEECCEEEC----SSCEEETTBCCC
T ss_pred CCceEEEEEe--CCCCCCCCCCCCCCCCcccccccccccccccCCCcccCCCCcEEEEEEEEec----CcEEEEcCEecC
Confidence 0112345554 443211110 00 1234454321111 112344444332111 236999999996
Q ss_pred CCc----------------------ccccCCCCeEEEEEE---eCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhcc
Q 008071 440 EPV----------------------TETPKAGTSEVWNVI---NLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKY 494 (579)
Q Consensus 440 ~~~----------------------~~~~~~G~~~~w~l~---N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~ 494 (579)
.+. .+.++.|++++|.|. |.+.+.||||||||+|+||+..
T Consensus 346 ~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh~F~Vl~~~--------------- 410 (499)
T 3pxl_A 346 PPTVPVLLQILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA--------------- 410 (499)
T ss_dssp CCSSCHHHHHHTTCCSTTTSSSTTSEEEECTTCEEEEEEECCTTSCSCSCEEEETTCCEEEEECT---------------
T ss_pred CCCCchhhhhhcCCccccccCCCceeEEecCCCEEEEEEecCcccCCCCccceecCCcEEEEecc---------------
Confidence 421 145789999999999 6667899999999999999762
Q ss_pred CCcccccccccccCcccccccccCcccceEEeCC---CcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccC
Q 008071 495 NDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTP---GYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNV 570 (579)
Q Consensus 495 ~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p---~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~G 570 (579)
|. ...+..+|.|||||.|++ |+++.| ||+ ++||| |||||||++|++.|
T Consensus 411 -------------g~-~~~n~~~P~~rDtv~v~~~~pg~~~~i--rf~------------adnPG~W~~HCHi~~H~~~G 462 (499)
T 3pxl_A 411 -------------GS-TVYNYDNPIFRDVVSTGTPAAGDNVTI--RFD------------TNNPGPWFLHCHIDFHLEGG 462 (499)
T ss_dssp -------------TC-CCCCSSSCCEESEEECCCGGGTCEEEE--EEE------------CCSCEEEEEEESSHHHHHTT
T ss_pred -------------CC-cccccCCCCccceEEcCCcCCCcEEEE--EEE------------cCCCceEEEEeCChhHhhCC
Confidence 21 234456789999999987 887655 777 57999 99999999999999
Q ss_pred ccccEEE
Q 008071 571 MMRPLKL 577 (579)
Q Consensus 571 Mm~~~~V 577 (579)
||.+|..
T Consensus 463 m~~~~~e 469 (499)
T 3pxl_A 463 FAVVMAE 469 (499)
T ss_dssp CEEEEEE
T ss_pred CcEEEEE
Confidence 9998853
No 18
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=5.5e-51 Score=463.39 Aligned_cols=234 Identities=16% Similarity=0.120 Sum_probs=171.4
Q ss_pred EEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEE
Q 008071 68 KIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVV 147 (579)
Q Consensus 68 ~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~i 147 (579)
.+.++.+...|..+. .+..| +++|||+|||++||+|+|+|+|+|+. +|+|
T Consensus 50 ~l~~~~~~~~~~~~~-~~~~~--------~~~pGP~Ir~~~GD~v~V~v~N~l~~---------------------~tsI 99 (742)
T 2r7e_A 50 TLFVEFTDHLFNIAK-PRPPW--------MGLLGPTIQAEVYDTVVITLKNMASH---------------------PVSL 99 (742)
T ss_dssp CCCCCCSSSCCCCSS-CSTTT--------TTTSEEEEEECSEEEEECCEECCSSS---------------------CCCC
T ss_pred EEEEEecceEEECCc-ccccc--------cCCcCCeEEEECCCEEEEEEEECCCC---------------------CEeE
Confidence 344444445555554 44555 37999999999999999999999997 8999
Q ss_pred eeCCCCCCCCCCCCCC------ccccccccCCCCcceeeeEEEeCCC---------CCceeeeecCCCChhhhhhcccce
Q 008071 148 HLHGGIDEPESDGNAN------SWFTAGFKEKGPTWTKKTYHYHNMQ---------QPGNLWYHDHAMGLTRINLLAGLV 212 (579)
Q Consensus 148 H~HG~~~~~~~DG~p~------~~~t~~~i~PG~~~~~~~y~~~~~~---------~~Gt~wYH~H~~g~t~~qv~~GL~ 212 (579)
||||+++++.+||+|. ..++||+|+||++| +|+|++.+ ++||||||||.+. ..|+++||+
T Consensus 100 HwHGl~~~~~~DG~p~~Dg~~~~~vtq~~I~PG~s~---tY~f~v~~~~gP~~~d~~~GT~wYHsH~~~--~~q~~~GL~ 174 (742)
T 2r7e_A 100 HAVGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSH---TYVWQVLKENGPMASDPLCLTYSYLSHVDL--VKDLNSGLI 174 (742)
T ss_dssp CCSSSCCCSSSSCCCSSCSCCSSSSSSSSCCTTCEE---CCEEEECGGGSCCSSSCSSCCEEECCCSCS--HHHHHHHCC
T ss_pred EecCcccCccccCCccCCCCcccccccCcCCCCCeE---EEEEEeccccCCCcCCCCcEEEEEccCCCh--HHHhhCCcE
Confidence 9999999998888874 23789999999999 99999753 4699999999963 468999999
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCC-CCCCCCCCCCCCCcEEEECCccc---CeEEec
Q 008071 213 GAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNN-PSIHPQWQPEYFGDAIIVNGKAW---PRMTVR 288 (579)
Q Consensus 213 G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~-~~~~~~~~~~~~gd~~~VNG~~~---P~~~v~ 288 (579)
|+|||+++. ......... .+|++|+++++ +++.+++....... ....+. ......+.++|||+.+ +.+.++
T Consensus 175 G~lIV~~~~-~~~~~~~~~-~~e~~l~~~~~--de~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~ING~~~~~~~~l~v~ 249 (742)
T 2r7e_A 175 GALLVCREG-SLAKEKTQT-LHKFILLFAVF--DEGKSWHSETKNSLMQDRDAA-SARAWPKMHTVNGYVNRSLPGLIGC 249 (742)
T ss_dssp EEEEECSSS-CTTTTTTTC-CCEECCCEECC--CCSSSSCCCCCC-------CC-SCCCCCCCCEETTBCTBCCCCCEEC
T ss_pred EEEEEecCc-ccCcccCce-eeEEEEEeecc--cCCccccccccccccccCCCc-cccccCceEEECCccCCCCcceEEc
Confidence 999999765 211111112 37888888753 33222222110000 000000 0011246789999985 668898
Q ss_pred C-cEEEEEEEecCCCe-eEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCC
Q 008071 289 R-RKYRFRIINASNAR-FYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSES 351 (579)
Q Consensus 289 ~-~~~RlRllNa~~~~-~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~ 351 (579)
+ ++|||||+|+++.. .+.||| +||.|+|++. .+|++.|.|||+++|++.++++
T Consensus 250 ~Ge~vrlrliN~g~~~~~h~~hl-hGh~f~Vvg~---------~~Dtv~v~Pg~~~~v~~~~~~p 304 (742)
T 2r7e_A 250 HRKSVYWHVIGMGTTPEVHSIFL-EGHTFLVRNH---------RQASLEISPITFLTAQTLLMDL 304 (742)
T ss_dssp SSSCEEEECCCCCSSSCCCCCCC-TTCCCEETTE---------ECCSCCCCTTCCCEEEECCCSC
T ss_pred CCCEEEEEEEeCCCCCcceEEEE-CCCEEEEEeE---------ecceEEeCCCcEEEEEEEeCCC
Confidence 8 99999999999875 799999 7999999852 3678889999999999998875
No 19
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=100.00 E-value=2.8e-49 Score=412.68 Aligned_cols=288 Identities=24% Similarity=0.279 Sum_probs=190.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhccccccCccCCCCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecC
Q 008071 1 MAIVERVLFLYLMFLAAARVMISSAARTEERLINPSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHR 80 (579)
Q Consensus 1 ~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 80 (579)
|+.++||+||++++++ +++++|++.+..+ +...+ .+|...+. .|+. .+++|++.+.
T Consensus 3 ~~~~~rr~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~-~~~~~~~~----~g~~--~~~~l~~~~~------ 58 (343)
T 3cg8_A 3 RRGFNRRVLLGGAAAA-TSLSIAPEVAGAA----------PAAKG-ITARTAPA----GGEV--RHLKMYAEKL------ 58 (343)
T ss_dssp ----------------------------------------------------------CCCE--EEEEEEEEEC------
T ss_pred cccccHHHHHHHHHHH-HHhhcCccccCcC----------ccccc-CCccccCC----CCeE--EEEEEEEEEc------
Confidence 5679999998877555 4455553321110 11112 22222221 3433 4777776653
Q ss_pred CCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCC
Q 008071 81 DLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDG 160 (579)
Q Consensus 81 ~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG 160 (579)
+..+|+|+....||++|||+|+|++||+|+|+|+|.++. +++|||||+++...+||
T Consensus 59 ---~~~~~~~~~~~~ng~~pGP~I~v~~Gd~v~v~~~N~l~~---------------------~~sih~HG~~~~~~~DG 114 (343)
T 3cg8_A 59 ---ADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDV---------------------RASLHVHGLDYEISSDG 114 (343)
T ss_dssp ---GGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSS---------------------CBCCEESSSBCCGGGSC
T ss_pred ---cCCeeeeeeecCCCCccCCEEEEECCCEEEEEEEECCCC---------------------CeeEEecCcccCCcCCC
Confidence 134789986667899999999999999999999999987 89999999999988999
Q ss_pred CCCccccccccCCCCcceeeeEEEeCCC------------CCceeeeecCCCChh--hhhhcccceEEEEEEcCCCCCCC
Q 008071 161 NANSWFTAGFKEKGPTWTKKTYHYHNMQ------------QPGNLWYHDHAMGLT--RINLLAGLVGAYIVRHHDVETPL 226 (579)
Q Consensus 161 ~p~~~~t~~~i~PG~~~~~~~y~~~~~~------------~~Gt~wYH~H~~g~t--~~qv~~GL~G~lIV~dp~~~~~~ 226 (579)
+| +++|+|.||++| +|+|++.+ ++||||||||.++.. ..|+++||+|+|||+++. +.
T Consensus 115 ~~---~t~~~I~PG~~~---~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~~~~-~~-- 185 (343)
T 3cg8_A 115 TA---MNKSDVEPGGTR---TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG-DV-- 185 (343)
T ss_dssp CT---TTTCSBCTTCEE---EEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT-CC--
T ss_pred cc---cccccccCCCEE---EEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEecCC-CC--
Confidence 98 578999999999 99999864 359999999997642 478999999999999554 21
Q ss_pred CCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEE
Q 008071 227 RLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYR 306 (579)
Q Consensus 227 ~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~ 306 (579)
.| |+|+.|+++|| +|||+.
T Consensus 186 -~p---d~e~~l~~~d~--------------------------------~iNG~~------------------------- 204 (343)
T 3cg8_A 186 -LP---DATHTIVFNDM--------------------------------TINNRK------------------------- 204 (343)
T ss_dssp -CC---SEEEEEEEETT--------------------------------EETTCC-------------------------
T ss_pred -CC---CceEEEEcccc--------------------------------eecccC-------------------------
Confidence 11 44554444321 233322
Q ss_pred EEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEec
Q 008071 307 FFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKK 386 (579)
Q Consensus 307 l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~ 386 (579)
T Consensus 205 -------------------------------------------------------------------------------- 204 (343)
T 3cg8_A 205 -------------------------------------------------------------------------------- 204 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCcee
Q 008071 387 NHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPL 466 (579)
Q Consensus 387 ~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~ 466 (579)
|.+...+.++.|++++|.|.|.+.+.|||
T Consensus 205 ---------------------------------------------------~~~~~~l~v~~Ge~vri~l~N~g~~~Hpf 233 (343)
T 3cg8_A 205 ---------------------------------------------------PHTGPDFEATVGDRVEIVMITHGEYYHTF 233 (343)
T ss_dssp ---------------------------------------------------TTCCCCEEEETTCEEEEEEEEESSCCEEE
T ss_pred ---------------------------------------------------CCCCccEEeCCCCEEEEEEEcCCcccccc
Confidence 21122345789999999999999899999
Q ss_pred eeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCC
Q 008071 467 HIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNAS 546 (579)
Q Consensus 467 HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~ 546 (579)
||||++|+|+..+.. . + +..++.||||+.|.||++++++++|..
T Consensus 234 HlHGh~f~v~~~G~~-------------~------------~-----p~~~~~~~Dtv~v~PG~~~~v~~~~~~------ 277 (343)
T 3cg8_A 234 HMHGHRWADNRTGIL-------------T------------G-----PDDPSRVIDNKITGPADSFGFQIIAGE------ 277 (343)
T ss_dssp EETTCCEESSSSSSC-------------C------------S-----TTCCCCEESEEEECTTCEEEEEEETTT------
T ss_pred EecCcEEEEeccCcc-------------c------------C-----CCCcccceeeEEeCCCCEEEEEEEECC------
Confidence 999999998743100 0 1 123457999999999999988777641
Q ss_pred CCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 547 YPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 547 ~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+++|| |+||||+++|++.|||..|+|.
T Consensus 278 -----~~~pG~w~~HCHi~~H~~~GM~g~~~V~ 305 (343)
T 3cg8_A 278 -----GVGAGAWMYHCHVQSHSDMGMVGLFLVK 305 (343)
T ss_dssp -----TTCSEEEEEEECSHHHHHTTCEEEEEEE
T ss_pred -----CCCCeeEEEeCCCHHHHhccCcEEEEEe
Confidence 35899 9999999999999999999985
No 20
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=100.00 E-value=3.2e-49 Score=404.89 Aligned_cols=121 Identities=31% Similarity=0.463 Sum_probs=105.7
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+++|.+++. +...|+|+....||++|||+|||++||+|+|+|+|+|+. +
T Consensus 30 ~~~~~~a~~~---------~~~~~~~~~~~~~gt~PGP~i~~~~GD~v~v~~~N~l~~---------------------~ 79 (299)
T 3t9w_A 30 RRITMYAEKI---------SDELYGYGLAPGGATVPGPVLEMWEGDTLEIDLVNTTDR---------------------V 79 (299)
T ss_dssp EEEEEEEEEE---------ETTEEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSS---------------------C
T ss_pred EEEEEEEEec---------CCCceeeeecCCCCCccCceEEEECCeEEEEEEEECCCC---------------------C
Confidence 3678887765 234578877777899999999999999999999999998 8
Q ss_pred eEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCC------------CCCceeeeecCCCCh--hhhhhccc
Q 008071 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNM------------QQPGNLWYHDHAMGL--TRINLLAG 210 (579)
Q Consensus 145 t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~------------~~~Gt~wYH~H~~g~--t~~qv~~G 210 (579)
|||||||+++++.+||++ ++||+|+||++| +|+|+++ +++||||||||.++. +..|+++|
T Consensus 80 ~siH~HG~~~~~~~DG~~---~~~~~i~PG~t~---~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~G 153 (299)
T 3t9w_A 80 LSLHPHGVDYDVNSDGTL---MNGSAVMPGQTR---RYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKG 153 (299)
T ss_dssp BCCEESSSBCCGGGSCCT---TTTCCBCTTCEE---EEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHHHT
T ss_pred ccEEeCCcccCCccCCCc---cccCccCCCCeE---EEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhccc
Confidence 999999999999999986 689999999999 9999875 368999999999874 45689999
Q ss_pred ceEEEEEEcCC
Q 008071 211 LVGAYIVRHHD 221 (579)
Q Consensus 211 L~G~lIV~dp~ 221 (579)
|+|+|||+++.
T Consensus 154 L~G~liV~~~~ 164 (299)
T 3t9w_A 154 LYGALVVRRQG 164 (299)
T ss_dssp CEEEEEEECTT
T ss_pred ccceEEEeccc
Confidence 99999999654
No 21
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=100.00 E-value=7.1e-49 Score=398.31 Aligned_cols=242 Identities=25% Similarity=0.315 Sum_probs=193.4
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+|+|++.+. ....++|+...+||++|||+|||++||+|+|+|+|+|+. +
T Consensus 8 ~~~~l~~~~~---------~~~~~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~~~~---------------------~ 57 (276)
T 3kw8_A 8 RHLKMYAEKL---------ADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDV---------------------R 57 (276)
T ss_dssp EEEEEEEEEC---------TTSCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSS---------------------C
T ss_pred EEEEEEEEeC---------CCCceecceeccCCcccCCeEEEECCCEEEEEEEECCCC---------------------C
Confidence 4788887774 346667776677899999999999999999999999987 8
Q ss_pred eEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCC------------CCceeeeecCCCChh--hhhhccc
Q 008071 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQ------------QPGNLWYHDHAMGLT--RINLLAG 210 (579)
Q Consensus 145 t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~------------~~Gt~wYH~H~~g~t--~~qv~~G 210 (579)
++|||||+++++.+||+| ++||+|+||++| +|+|++++ ++||||||||.++.+ ..|+++|
T Consensus 58 ~siH~HG~~~~~~~DG~~---~t~~~i~pG~~~---~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~G 131 (276)
T 3kw8_A 58 ASLHVHGLDYEISSDGTA---MNKSDVEPGGTR---TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNG 131 (276)
T ss_dssp BCCEESSSBCCGGGSCCT---TTTCSBCTTCEE---EEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHT
T ss_pred ccEeecCcccCCccCCCc---CCcCCCCCCCEE---EEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCc
Confidence 999999999999999998 789999999999 99999975 379999999999866 4799999
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCc
Q 008071 211 LVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRR 290 (579)
Q Consensus 211 L~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~ 290 (579)
|+|+|||+++. . . . .|+|++|+++|
T Consensus 132 l~G~liV~~~~-~-~---~--~drE~~l~l~~------------------------------------------------ 156 (276)
T 3kw8_A 132 LYGPVIVRRKG-D-V---L--PDATHTIVFND------------------------------------------------ 156 (276)
T ss_dssp CEEEEEEECTT-C-C---C--CSEEEEEEEET------------------------------------------------
T ss_pred cEEEEEEecCC-C-c---c--cccceEEEecc------------------------------------------------
Confidence 99999999544 2 0 1 12333322110
Q ss_pred EEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCC
Q 008071 291 KYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGD 370 (579)
Q Consensus 291 ~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~ 370 (579)
T Consensus 157 -------------------------------------------------------------------------------- 156 (276)
T 3kw8_A 157 -------------------------------------------------------------------------------- 156 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCCCcceEEEcCeecCCCcccccCCCC
Q 008071 371 PVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGT 450 (579)
Q Consensus 371 ~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~~~~~~~~~G~ 450 (579)
|+|||+.|.+...+.++.|+
T Consensus 157 ------------------------------------------------------------~~iNG~~~~~~p~i~v~~G~ 176 (276)
T 3kw8_A 157 ------------------------------------------------------------MTINNRKPHTGPDFEATVGD 176 (276)
T ss_dssp ------------------------------------------------------------TEETTCCTTCCCCEEEETTC
T ss_pred ------------------------------------------------------------cccceecccCCCCEEEecCC
Confidence 12555555544556788999
Q ss_pred eEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCc
Q 008071 451 SEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGY 530 (579)
Q Consensus 451 ~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~ 530 (579)
+++|.|+|.+.+.|||||||+.|++++.+.. ..+...+.||||+.|.||+
T Consensus 177 ~vri~l~N~~~~~Hp~HlHG~~f~v~~~G~~------------------------------~~p~~~~~~~Dtv~v~pg~ 226 (276)
T 3kw8_A 177 RVEIVMITHGEYYHTFHMHGHRWADNRTGIL------------------------------TGPDDPSRVIDNKITGPAD 226 (276)
T ss_dssp EEEEEEEEESSCCEEEEETTCCEESSSSSSC------------------------------CSTTCCCCEESEEEECTTC
T ss_pred EEEEEEecCCCcceeEEEccceeEEeccCcc------------------------------CCCcccccCCccEEeCCCc
Confidence 9999999998899999999999998753210 0111234699999999999
Q ss_pred EEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 531 VTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 531 ~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
++++++++.. ++||| |+||||+++|++.|||+.|+|.
T Consensus 227 ~~~~~~~~~~-----------~~npG~w~~HCH~~~H~~~GM~g~~~V~ 264 (276)
T 3kw8_A 227 SFGFQIIAGE-----------GVGAGAWMYHCHVQSHSDMGMVGLFLVK 264 (276)
T ss_dssp EEEEEEETTT-----------TTCSEEEEEEECSHHHHHTTCEEEEEEE
T ss_pred eEEEEEEecc-----------CCCCCeEEEECCCchHhhCCCeEEEEEe
Confidence 9888776651 34899 9999999999999999999985
No 22
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=100.00 E-value=9.7e-49 Score=404.21 Aligned_cols=243 Identities=26% Similarity=0.335 Sum_probs=189.4
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+++|.+++ + +...|+|+....||++|||+|||++||+|+|+|+|+|+. +
T Consensus 14 ~~~~~~~~~----~-----~~~~~~~~~~~~~~t~PGP~i~~~~Gd~v~v~~~N~l~~---------------------~ 63 (313)
T 3tas_A 14 KRIKLYAER----L-----GGGQMGYGLEKGKATIPGPLIELNEGDTLHIEFENTMDV---------------------P 63 (313)
T ss_dssp EEEEEEEEE----C-----GGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSS---------------------C
T ss_pred EEEEEEEEE----c-----CCCceeeeeecCCccccCCeEEEECCCEEEEEEEECCCC---------------------C
Confidence 366666543 2 345667776677899999999999999999999999998 8
Q ss_pred eEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCC------------CCCceeeeecCCCCh--hhhhhccc
Q 008071 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNM------------QQPGNLWYHDHAMGL--TRINLLAG 210 (579)
Q Consensus 145 t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~------------~~~Gt~wYH~H~~g~--t~~qv~~G 210 (579)
|||||||+++++.+||+| .++|+|.||++| +|+|++. +++||||||||.++. +..|+++|
T Consensus 64 ~siH~HG~~~~~~~dG~~---~~~~~i~PG~~~---~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~G 137 (313)
T 3tas_A 64 VSLHVHGLDYEISSDGTK---QSRSDVEPGGTR---TYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNG 137 (313)
T ss_dssp BCCEESSSBCCGGGSCST---TTTCCBCTTCEE---EEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHT
T ss_pred ccEeecCCcCCccCCCCc---cccCCcCCCCEE---EEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhcc
Confidence 999999999999999998 478899999999 9999864 368999999999764 56789999
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCc
Q 008071 211 LVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRR 290 (579)
Q Consensus 211 L~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~ 290 (579)
|+|+|||+++. + +. +|+|++|+++||. +||+..
T Consensus 138 l~G~liV~~~~-~-----~~-~d~e~~l~~~d~t--------------------------------~Ng~~~-------- 170 (313)
T 3tas_A 138 LYGPVIVRRKG-D-----VL-PDRTHTIVFNDMT--------------------------------INNRPA-------- 170 (313)
T ss_dssp CEEEEEEECTT-C-----BC-CSEEEEEEEETTE--------------------------------ETTCCT--------
T ss_pred ccCceEeeccc-c-----cc-ccccceeeccchh--------------------------------cccCCc--------
Confidence 99999999654 2 11 2678777776542 111100
Q ss_pred EEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCC
Q 008071 291 KYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGD 370 (579)
Q Consensus 291 ~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~ 370 (579)
.
T Consensus 171 ----------------------------------------------------------------------------~--- 171 (313)
T 3tas_A 171 ----------------------------------------------------------------------------H--- 171 (313)
T ss_dssp ----------------------------------------------------------------------------T---
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred CCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCCCcceEEEcCeecCCCcccccCCCC
Q 008071 371 PVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGT 450 (579)
Q Consensus 371 ~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~~~~~~~~~G~ 450 (579)
..| .+.++.|+
T Consensus 172 -----------------------~~~----------------------------------------------~l~v~~Ge 182 (313)
T 3tas_A 172 -----------------------TGP----------------------------------------------DFEATVGD 182 (313)
T ss_dssp -----------------------CCC----------------------------------------------CEEEETTC
T ss_pred -----------------------ccc----------------------------------------------ccccccCC
Confidence 000 01245788
Q ss_pred eEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCc
Q 008071 451 SEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGY 530 (579)
Q Consensus 451 ~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~ 530 (579)
+++|.|.|.+.+.|||||||+.|+|+.++.. ..+...+.|+||+.|.||+
T Consensus 183 ~vr~~liN~g~~~hpfHlHGh~F~v~~~~~~------------------------------~~~~~~~~~~Dtv~l~Pge 232 (313)
T 3tas_A 183 RVEFVMITHGEYYHTFHLHGHRWADNRTGML------------------------------TGPDDPSQVIDNKICGPAD 232 (313)
T ss_dssp EEEEEEEEESSCCEEEEETTCCEESSTTSSC------------------------------CSTTCCCCEESEEEECTTC
T ss_pred EEEEEEecccccceeeeecCCeeEEEEECCc------------------------------cCCCCCCeeeeEEEeCCCc
Confidence 9999999999899999999999999876311 1122346799999999999
Q ss_pred EEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 531 VTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 531 ~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.+.+++.+.. ++||| ||||||+++|++.|||+.|+|.+
T Consensus 233 r~~v~v~a~~-----------~~nPG~w~~HCHi~~H~~~GM~~~f~V~~ 271 (313)
T 3tas_A 233 SFGFQVIAGE-----------GVGAGAWMYHCHVQSHSDMGMVGLFLVKK 271 (313)
T ss_dssp EEEEEEETTT-----------TTCSEEEEEEECSHHHHHTTCEEEEEEEC
T ss_pred ceEEEEEecc-----------CCCCEeEEEEeCChHHHHCCCeEEEEEEC
Confidence 8887665431 46899 99999999999999999999863
No 23
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=100.00 E-value=8.6e-47 Score=390.16 Aligned_cols=244 Identities=23% Similarity=0.379 Sum_probs=205.8
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+|+|++++.++++.++. .+.+|+|| |++|||+|||++||+|+|+|+|.|+. +
T Consensus 3 ~~~~l~~~~~~~~~~~g~-~~~~~~~n-----g~~pGP~i~~~~Gd~v~v~~~N~l~~---------------------~ 55 (318)
T 3g5w_A 3 REFDLSIEDTRIVLVGKR-DFHTFAFN-----GQVPAPLIHVMEGDDVTVNVTNMTTL---------------------P 55 (318)
T ss_dssp EEEEEEEEEEEEEEETTE-EEEEEEET-----TBSSCCEEEEETTCEEEEEEEECSSS---------------------C
T ss_pred EEEEEEEEEEEEEcCCCc-EEEEEEEC-----CccCCceEEEeCCCEEEEEEEeCCCC---------------------c
Confidence 478999999999998776 68999997 99999999999999999999999987 8
Q ss_pred eEEeeCCCCCCC--CCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhh-cccceEEEEEEcCC
Q 008071 145 TVVHLHGGIDEP--ESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINL-LAGLVGAYIVRHHD 221 (579)
Q Consensus 145 t~iH~HG~~~~~--~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv-~~GL~G~lIV~dp~ 221 (579)
++|||||+++.+ .+||+|+ ++||+|.||+++ +|+|+++ ++||||||||.+ +..|+ ++||+|+|||++++
T Consensus 56 ~siH~HG~~~~~~~~~DG~p~--~t~~~i~PG~~~---~y~f~~~-~~Gt~wYH~H~~--~~~~~~~~Gl~G~lIV~~~~ 127 (318)
T 3g5w_A 56 HTIHWHGMLQRGTWQSDGVPH--ATQHAIEPGDTF---TYKFKAE-PAGTMWYHCHVN--VNEHVTMRGMWGPLIVEPKN 127 (318)
T ss_dssp BCCEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECC-SCEEEEEECCSS--HHHHHHHSCCEEEEEEECSS
T ss_pred eeEEecCcCCCCCcccCCCcc--cccccCCCCCEE---EEEEEcC-CCEEEEEEccCC--hhhhhccCCCEEEEEEcCCC
Confidence 999999999876 5999998 899999999999 9999997 999999999995 33455 58999999999544
Q ss_pred CCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCe---EEecC-cEEEEEEE
Q 008071 222 VETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPR---MTVRR-RKYRFRII 297 (579)
Q Consensus 222 ~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~---~~v~~-~~~RlRll 297 (579)
. ..++..+++|++|+|+||..+..... . .+. .++..+++++|||+.+|. +.++. ++|||||+
T Consensus 128 -~--~~~~~~~d~e~~l~l~dw~~~~~~~~--~-~~~--------~~~~~~d~~~ING~~~~~~~~l~v~~G~~vrlrli 193 (318)
T 3g5w_A 128 -P--LPIEKTVTKDYILMLSDWVSSWANKP--G-EGG--------IPGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLI 193 (318)
T ss_dssp -C--CHHHHTCCEEEEEEEEEECGGGTTCT--T-CCC--------CTTCCCCEEEETTBCBTSSCCEEECTTCEEEEEEE
T ss_pred -c--ccccccccceeEEEEEeecccccccc--c-cCC--------CCCCcCcEEEEcCcCCCCCccEEeCCCCEEEEEEE
Confidence 2 22233358899999999976543221 0 010 112346899999999886 88988 89999999
Q ss_pred ecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 298 NASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 298 Na~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
|++.. .++||| |||.|+||+.||.++++|..+|++.|+||||+||++++++++ .|.+.-.
T Consensus 194 N~~~~-~h~~hl-hGh~f~vi~~dG~~~~~p~~~dtv~l~pger~~v~~~a~~pG--~w~~hCH 253 (318)
T 3g5w_A 194 GAGDH-VHAIHT-HGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNPG--LWMIHDH 253 (318)
T ss_dssp ECSSS-CEEEEE-TTSCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCS--EEEEEES
T ss_pred eCCCc-eEEEEE-CCcEEEEEecCCcccCCCccccEEEECCCCEEEEEEECCCCe--eEEEEec
Confidence 99975 689999 799999999999999889999999999999999999999864 6766544
No 24
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=100.00 E-value=3.7e-46 Score=387.35 Aligned_cols=262 Identities=19% Similarity=0.234 Sum_probs=214.5
Q ss_pred ccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEc
Q 008071 39 EMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQN 118 (579)
Q Consensus 39 ~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N 118 (579)
..++++|++||.+.+. .++ ..+++|++++..+++.++. .+.+|+|| |++|||+|+|++||+|+|+|+|
T Consensus 19 ~~~~~~~~ip~~~~~~----~~~--~~~~~l~~~~~~~~~~~G~-~~~~~~~n-----g~~pgP~i~v~~Gd~v~v~~~N 86 (327)
T 1kbv_A 19 AVTTHAPEVPPAIDRD----YPA--KVRVKMETVEKTMKMDDGV-EYRYWTFD-----GDVPGRMIRVREGDTVEVEFSN 86 (327)
T ss_dssp CCCBCTTCCCCCCCCS----SCC--EEEEEEEEEEEEEEEETTE-EEEEEEET-----TBSSCCBEEEETTCEEEEEEEE
T ss_pred ccccCCCCCCCCcccC----CCC--EEEEEEEEEEEEEEeCCCc-EEEEEEEC-----CccCCCeEEEeCCCEEEEEEEE
Confidence 4677888888887542 232 3578999999999987666 78999997 9999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecC
Q 008071 119 HLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDH 198 (579)
Q Consensus 119 ~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H 198 (579)
.++.. .++++||||+. .+||.+. .+ .|.||++| +|+|+++ ++||||||||
T Consensus 87 ~~~~~-------------------~~~~ih~HG~~---~~dG~~~--~~--~i~PG~~~---~y~f~~~-~~Gt~wyH~h 136 (327)
T 1kbv_A 87 NPSST-------------------VPHNVDFHAAT---GQGGGAA--AT--FTAPGRTS---TFSFKAL-QPGLYIYHCA 136 (327)
T ss_dssp CTTCS-------------------SCBCCEETTCC---SGGGGTT--TT--CBCTTEEE---EEEEECC-SCEEEEEECC
T ss_pred CCCCC-------------------CceeeEeCccc---cCCCCCc--ce--eecCCCEE---EEEEECC-CCeEEEEEeC
Confidence 98741 17999999986 4688875 33 38999999 9999998 7999999999
Q ss_pred CCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecC----CcEEecCCCCCCCCCCCCCCCCCCcE
Q 008071 199 AMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTD----GSIYMNSTGNNPSIHPQWQPEYFGDA 274 (579)
Q Consensus 199 ~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~----g~~~~~~~g~~~~~~~~~~~~~~gd~ 274 (579)
.++ +..|+++||+|+|||++++ .+|+ +++|++++++||+.+.+ |...++ .....+..++.
T Consensus 137 ~~~-~~~~~~~Gl~G~~iV~~~~-----~~p~-~d~e~~l~~~d~~~~~~~~~~g~~~~~---------~~~~~~~~~~~ 200 (327)
T 1kbv_A 137 VAP-VGMHIANGMYGLILVEPKE-----GLPK-VDKEFYIVQGDFYTKGKKGAQGLQPFD---------MDKAVAEQPEY 200 (327)
T ss_dssp CSS-HHHHHHTTCEEEEEEECTT-----CCCC-CSEEEEEEEEEECBSSCTTCCEEECBC---------HHHHHHTCCSE
T ss_pred CCC-hhhhhhcceEEEEEEecCC-----CCCC-CceEEEEEeeeeeccCccccccccccC---------hhHhccCCCce
Confidence 987 7789999999999999543 2454 48899999999976542 111100 00011245789
Q ss_pred EEECCcccC-----eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEc
Q 008071 275 IIVNGKAWP-----RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDF 348 (579)
Q Consensus 275 ~~VNG~~~P-----~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~ 348 (579)
++|||+.++ .+++++ ++|||||+|+|+++.+.||| +||.|+||+.||+++ +|..++++.|+||||+||+|++
T Consensus 201 ~~iNG~~~~~~~~~~l~v~~G~~vRlRliN~~~~~~~~~~l-~Gh~f~vi~~DG~~~-~p~~~d~l~l~pGer~dv~v~~ 278 (327)
T 1kbv_A 201 VVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHV-IGEIFDKVYVEGGKL-INENVQSTIVPAGGSAIVEFKV 278 (327)
T ss_dssp EEETTSTTTTSGGGCEEEETTEEEEEEEEEEESSCCEEEEE-ETCCBSEEEGGGSSC-EECSBSEEEECTTEEEEEEEEE
T ss_pred EEEcCcccCCCCceeEEeCCCCEEEEEEECCCCCCceeEEE-eCCEEEEEEcCCCcC-CCCceeEEEECCCCEEEEEEEe
Confidence 999999986 489988 89999999999999999999 599999999999999 4999999999999999999999
Q ss_pred CCCCCcEEEEecCC
Q 008071 349 SESKSDVAILANDA 362 (579)
Q Consensus 349 ~~~~g~~~~l~~~~ 362 (579)
+++ | .|+|....
T Consensus 279 ~~p-G-~y~l~~h~ 290 (327)
T 1kbv_A 279 DIP-G-NYTLVDHS 290 (327)
T ss_dssp CSC-E-EEEEEESS
T ss_pred CCC-e-EEEEEecc
Confidence 985 3 88887754
No 25
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=100.00 E-value=1.4e-44 Score=377.37 Aligned_cols=244 Identities=23% Similarity=0.370 Sum_probs=205.3
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+++|++++..+++.++. .+.+|+|| |++|||+|+|++||+|+|+|+|.|+. +
T Consensus 4 ~~~~l~~~~~~~~~~~g~-~~~~~~~N-----G~~pGP~I~v~~Gd~v~v~v~N~l~~---------------------~ 56 (339)
T 2zwn_A 4 REFDMTIEEVTIKVAPGL-DYKVFGFN-----GQVPGPLIHVQEGDDVIVNVTNNTSL---------------------P 56 (339)
T ss_dssp EEEEEEEEEEEEEEETTE-EEEEEEET-----TBSSCCEEEEETTCEEEEEEEEESSS---------------------C
T ss_pred EEEEEEEEEEEEEcCCCc-EEEEEEEC-----CccCCCeEEEECCCEEEEEEEECCCC---------------------C
Confidence 468899999999998777 78999997 99999999999999999999999987 8
Q ss_pred eEEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhc-ccceEEEEEEcCC
Q 008071 145 TVVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLL-AGLVGAYIVRHHD 221 (579)
Q Consensus 145 t~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~-~GL~G~lIV~dp~ 221 (579)
++|||||+++.+. +||+|. ++||+|.||++| +|.|+++ ++||||||||.. ...|+. +||+|++||+++.
T Consensus 57 ~siH~HG~~~~~~~~~DGvp~--vtq~~I~PG~~~---~y~f~~~-~~Gt~wyH~H~~--~~~q~~~~Gl~G~liV~p~~ 128 (339)
T 2zwn_A 57 HTIHWHGVHQKGTWRSDGVPG--VTQQPIEAGDSY---TYKFKAD-RIGTLWYHCHVN--VNEHVGVRGMWGPLIVDPKQ 128 (339)
T ss_dssp BCCEEETCCCTTCGGGSCCBT--TTBCCBCTTCEE---EEEEECC-SCEEEEEECCSS--HHHHTTTSCCEEEEEEECSS
T ss_pred ccEEeCCCCcCCCcccCCCCc--cccCccCCCCeE---EEEEECC-CCEEEEEEecCC--chhhhhcCCceEeEEecCCC
Confidence 9999999999988 999998 899999999999 9999998 899999999995 345887 9999999999443
Q ss_pred CCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCe---EEecC-cEEEEEEE
Q 008071 222 VETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPR---MTVRR-RKYRFRII 297 (579)
Q Consensus 222 ~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~---~~v~~-~~~RlRll 297 (579)
.. .++..+++|++|+|+||.+...... ...+ .....++.++|||+.+|. +++++ ++|||||+
T Consensus 129 -~~--~~~~~~d~e~~l~l~d~~~~~~~~~--~~~g---------~~~~~~~~~~ING~~~~~~~~~~v~~G~~vrlrli 194 (339)
T 2zwn_A 129 -PL--PIEKRVTKDVIMMMSTWESAVADKY--GEGG---------TPMNVADYFSVNAKSFPLTQPLRVKKGDVVKIRFF 194 (339)
T ss_dssp -CC--TTGGGCSEEEEEEEEEECGGGTTCT--TCCC---------STTSCCCEEEETTBCTTSSCCEEECTTCEEEEEEE
T ss_pred -cc--cccccCCceEEEEeeheeccccccc--CCCC---------CCccccceEEEccccCCCcccEEECCCCEEEEEEE
Confidence 32 2344457899999999975322110 0000 011246899999999876 88988 89999999
Q ss_pred ecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 298 NASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 298 Na~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
|+++. .+.||| +||.|+||+.||.+++.|..++++.|+||||+||+|++++++ .|.+...
T Consensus 195 N~~~~-~h~~hl-hGh~f~vi~~DG~~~~~p~~~dtv~l~pg~r~~v~~~~~~pG--~w~~hch 254 (339)
T 2zwn_A 195 GAGGG-IHAMHS-HGHDMLVTHKDGLPLDSPYYADTVLVSPGERYDVIIEADNPG--RFIFHDH 254 (339)
T ss_dssp ECSSS-CEEEEE-TTCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSCS--EEEEEEC
T ss_pred eCCCc-eEEEEE-CCcEEEEEEeCCeecCCCcEEEEEEECCCCEEEEEEEeCCCe--eEEEEEe
Confidence 99965 899999 799999999999999779999999999999999999998864 5666544
No 26
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=100.00 E-value=2.3e-44 Score=375.71 Aligned_cols=306 Identities=18% Similarity=0.204 Sum_probs=226.4
Q ss_pred CCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEE
Q 008071 36 SQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVT 115 (579)
Q Consensus 36 ~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~ 115 (579)
..+++|.++|++||.+.+......+..+..+++|++.+..+++.++...+.+|+|| |++|||+|+|++||+|+|+
T Consensus 4 ~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~n-----g~~pgP~i~v~~Gd~v~v~ 78 (336)
T 1oe1_A 4 DKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFN-----GSMPGPTLVVHEGDYVQLT 78 (336)
T ss_dssp GGSCEEECCCCCTTSCCCCCSSCCCCCCEEEEEEEEEEEEEECSTTCCEEEEEEET-----TBSSCCCEEEETTCEEEEE
T ss_pred cccccccccccCCCCCCcccccccCCCcEEEEEEEEEEEEEEECCCCcEEEEEEEC-----CccCCCeEEEcCCCEEEEE
Confidence 46789999999999987643211222333689999999999998866688999997 9999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeee
Q 008071 116 WQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWY 195 (579)
Q Consensus 116 ~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wY 195 (579)
|+|.+...+ ++++|+||.. ..||.+. +++ |.||++| +|+|+++ ++|||||
T Consensus 79 ~~N~~~~~~-------------------~h~~~~h~~~---~~~~~~~--~~~--i~pG~~~---~y~f~~~-~~Gt~~y 128 (336)
T 1oe1_A 79 LVNPATNAM-------------------PHNVDFHGAT---GALGGAK--LTN--VNPGEQA---TLRFKAD-RSGTFVY 128 (336)
T ss_dssp EEECTTCCS-------------------CBCCEETTSC---SGGGGGG--GCC--BCTTEEE---EEEEECC-SCEEEEE
T ss_pred EEcCCCCCc-------------------cccceECCCC---CCCCCcc--eEE--eCCCCEE---EEEEECC-CCeEEEE
Confidence 999976321 6788888853 2344443 554 9999999 9999998 7999999
Q ss_pred ecCCCChhhhhhcccceEEEEEEcCCCC-CCCCCCCCCCCceeEEEEeeeee--cCCcEE-ecCCCCCCCCCCCCCCCCC
Q 008071 196 HDHAMGLTRINLLAGLVGAYIVRHHDVE-TPLRLPSGDEFDRPLVVFDRSFR--TDGSIY-MNSTGNNPSIHPQWQPEYF 271 (579)
Q Consensus 196 H~H~~g~t~~qv~~GL~G~lIV~dp~~~-~~~~lp~~~~~e~~lvl~D~~~~--~~g~~~-~~~~g~~~~~~~~~~~~~~ 271 (579)
|||.++.+..|+++||+|+|||+++... .+.+.|..+|+|++|+++||++. .+|++. |...+........++.+..
T Consensus 129 H~h~~~~~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~~D~e~~l~~~D~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (336)
T 1oe1_A 129 HCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLT 208 (336)
T ss_dssp ECCCTTCHHHHHHTTCEEEEEEECTTCCBCTTSCBCCCSEEEEEEEEEECCCBCTTSSBCCCSSTGGGHHHHHHHHHTTC
T ss_pred ecCCCCchhHHHhCCCeEEEEEecCcCCcccccCcccCCceeEeeeeeeeeccccCCceeecccccccccchhhHhhcCC
Confidence 9999998899999999999999954311 22334555788999999999874 455442 1110000000000112456
Q ss_pred CcEEEECCcc-----cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEE-ecEEEeCcceEEEE
Q 008071 272 GDAIIVNGKA-----WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVV-TNETLLAPSEIADV 344 (579)
Q Consensus 272 gd~~~VNG~~-----~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~-~~~l~l~pgeR~dv 344 (579)
++.++|||+. .+.++|++ +++ ||+|++.++.+.+++.+||.|+|++ ||++++.|.. ++++.|+||||+||
T Consensus 209 ~~~~liNG~~~~~~~~~~l~v~~Gerv--Rlin~~~~~~~~~~~i~gh~~~Vi~-DG~~~~p~~~~~dtv~i~pGer~dv 285 (336)
T 1oe1_A 209 PSHIVFNGKVGALTGANALTAKVGETV--LLIHSQANRDTRPHLIGGHGDWVWE-TGKFANPPQRDLETWFIRGGSAGAA 285 (336)
T ss_dssp CSEEEETTSTTTTSGGGCEEEETTCEE--EEEEEESSSCBCEEETTCCEEEEET-TCCTTSCCEEEESBCCBCTTEEEEE
T ss_pred CCEEEECCeeccCCCCcceEcCCCCEE--EEEecCCCCccceEEECCcCceEeC-CCcCcCCccccceEEEECCCCcEEE
Confidence 8999999998 47899998 655 5678888888888877899999997 9999966654 68999999999999
Q ss_pred EEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCC
Q 008071 345 VIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNH 388 (579)
Q Consensus 345 lv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~ 388 (579)
+|+|+++ | .|.+.+...... ...+.+..|+|.+..
T Consensus 286 lv~~~~p-G-~y~~~~h~~~~~-------~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQP-G-VYAYLNHNLIEA-------FELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSC-E-EEEEEESSHHHH-------HTTSCEEEEEEESCC
T ss_pred EEEcCCC-c-eEEEEechhhcc-------ccCCCeEEEEECCCC
Confidence 9999985 3 788876532100 012355677787654
No 27
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=100.00 E-value=1.7e-43 Score=360.93 Aligned_cols=231 Identities=20% Similarity=0.310 Sum_probs=200.3
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
.+++|++.+.++++.++. .+.+|+|| |++|||+||+++||+|+|+|+|.|+. +
T Consensus 35 ~~~~l~~~~~~~~~~~g~-~~~~~~~n-----g~~pgP~i~~~~Gd~v~v~~~N~~~~---------------------~ 87 (288)
T 3gdc_A 35 REWDIVAVDKDFEIAPGI-IFKGWSYN-----GRIPGPTLWAREGDALRIHFTNAGAH---------------------P 87 (288)
T ss_dssp EEEEEEEEEEEEEEETTE-EEEEEEET-----TBSSCCEEEEETTCEEEEEEEECSSS---------------------C
T ss_pred EEEEEEEEEEEEEeCCCc-EEEEEEEC-----CccCCCcEEEeCCCEEEEEEEeCCCC---------------------c
Confidence 578999999999998877 79999997 99999999999999999999999998 8
Q ss_pred eEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCC
Q 008071 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVET 224 (579)
Q Consensus 145 t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~ 224 (579)
++|||||++ ...+||+|+ .++++|.||+++ +|+|+++ ++||||||||.++ ++.|+++||+|+|||+++. +
T Consensus 88 ~~iH~HG~~-~~~~DG~p~--~~~~~i~PG~~~---~y~f~~~-~~Gt~~yH~H~~~-~~~~~~~Gl~G~liV~~~~-~- 157 (288)
T 3gdc_A 88 HTIHFHGVH-RATMDGTPG--IGAGSIAPGQSF---TYEFDAT-PFGTHLYHCHQSP-LAPHIAKGLYGGFIVEPKE-G- 157 (288)
T ss_dssp BCCEESSCC-CGGGSCCTT--STTCSBCTTCEE---EEEEECC-SCEEEEEECCCSS-HHHHHHTTCEEEEEEECSS-C-
T ss_pred ccEEecccc-ccccCCCCC--ccceeECCCCEE---EEEEEcC-CCccEEEEecCcc-hHHHHhCcCeEEEEEeCCc-c-
Confidence 999999998 567999998 789999999999 9999996 9999999999986 4679999999999999554 3
Q ss_pred CCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC----eEEecC-cEEEEEEEec
Q 008071 225 PLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP----RMTVRR-RKYRFRIINA 299 (579)
Q Consensus 225 ~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P----~~~v~~-~~~RlRllNa 299 (579)
.|. +++|++|+++||..+ ++. .++.++|||+.++ .++++. +++||||+|+
T Consensus 158 ---~~~-~d~e~~l~~~d~~~~-~g~--------------------~~~~~~iNG~~~~~~~~~l~v~~Ge~vr~~l~N~ 212 (288)
T 3gdc_A 158 ---RPP-ADDEMVMVMNGYNTD-GGD--------------------DNEFYSVNGLPFHFMDFPVKVKQHELVRIHLINV 212 (288)
T ss_dssp ---CCC-CSEEEEEEEEEECCS-STT--------------------CCSEEEETTSTTHHHHSCEEEETTCCEEEEEEEC
T ss_pred ---CCC-CcceEEEEEeeEecC-CCC--------------------CcceEEECcccccccCcccccCCCCEEEEEEEeC
Confidence 133 378999999998644 211 2578999999885 488888 8999999999
Q ss_pred CCCe-eEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 300 SNAR-FYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 300 ~~~~-~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
+... .++||| +|+.|.+++ +|..+..|..+|++.|+||||++|+++|++++ .|.+...
T Consensus 213 g~~~~~H~fHl-hG~~f~v~~-~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG--~~~~hCH 271 (288)
T 3gdc_A 213 LEYDPINSFHI-HGNFFHYYP-TGTMLTPSEYTDTISQVQGQRGILELRFPYPG--KFMFHAH 271 (288)
T ss_dssp CCSSSEEEEEE-TTCCEEEEE-TTCCSSCSEEESEEEEETTCEEEEEECCCSCE--EEEEECS
T ss_pred CCCCcceeEEE-cCCEEEEEc-CCCccCCCceeeEEEeCCCceEEEEEECCCCE--EEEEEec
Confidence 9654 799999 799999987 66677678999999999999999999999764 7777653
No 28
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=3.3e-43 Score=414.89 Aligned_cols=409 Identities=15% Similarity=0.139 Sum_probs=259.2
Q ss_pred EEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCC
Q 008071 76 WKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDE 155 (579)
Q Consensus 76 ~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~ 155 (579)
..+..+. ++++|+ ++|||+||+++||+|+|+|+|+|+. +|+|||||++++
T Consensus 78 ~~~~~~~-~~~~w~--------~~PGP~Ir~~~GD~v~v~v~N~l~~---------------------~tsiHwHGl~~~ 127 (1065)
T 2j5w_A 78 ETFRTTI-EKPVWL--------GFLGPIIKAETGDKVYVHLKNLASR---------------------PYTFHSHGITYY 127 (1065)
T ss_dssp SSTTSBC-CCCGGG--------TTSCCCEEEETTCEEEEEEEEESSS---------------------CBCCEESSSBCC
T ss_pred eeecCCc-cccccc--------CCcCCeEEEeCCeEEEEEEEECCCC---------------------CeeEEeCCccCC
Confidence 3454444 456664 5999999999999999999999998 899999999999
Q ss_pred CCCCCCC--Cc----cccccccCCCCcceeeeEEEeCCCC---------CceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 156 PESDGNA--NS----WFTAGFKEKGPTWTKKTYHYHNMQQ---------PGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 156 ~~~DG~p--~~----~~t~~~i~PG~~~~~~~y~~~~~~~---------~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
+.+||+| +. .++||+|+||++| +|+|++.++ +||||||||.+. ..|+++||+|+|||+++
T Consensus 128 ~~~DG~~~~dg~~g~~~t~~~I~PG~t~---tY~f~~~~~~gp~~~d~~aGT~wYHsH~~~--~~qv~~GL~G~lIV~~~ 202 (1065)
T 2j5w_A 128 KEHEGAIYPDNTTDFQRADDKVYPGEQY---TYMLLATEEQSPGEGDGNCVTRIYHSHIDA--PKDIASGLIGPLIICKK 202 (1065)
T ss_dssp GGGCCCCSCCCCCGGGTGGGCBCTTCEE---EEEEECCSTTSCCTTSCSEEEEEEECCSSH--HHHHHHTCEEEEEEECT
T ss_pred cccCCcccCCCCCcccccccccCCCCEE---EEEEEeccccCCccCCCCceEEEEEeccCc--hhHhhCccEEEEEEecC
Confidence 8888874 22 2679999999999 999999865 499999999973 46899999999999966
Q ss_pred CCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecC----CCCCCCCCCCCCCC--CCCcEEEECCccc---CeEEecC-c
Q 008071 221 DVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNS----TGNNPSIHPQWQPE--YFGDAIIVNGKAW---PRMTVRR-R 290 (579)
Q Consensus 221 ~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~----~g~~~~~~~~~~~~--~~gd~~~VNG~~~---P~~~v~~-~ 290 (579)
+ ...++.+.++|+|++|+|+|+ +++++++... ....+......... ..++.++|||+.+ |.+.+++ +
T Consensus 203 ~-~~~~p~~~~~d~e~~l~l~d~--d~~~~w~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~iNG~~~~~~~~l~v~~Ge 279 (1065)
T 2j5w_A 203 D-SLDKEKEKHIDREFVVMFSVV--DENFSWYLEDNIKTYCSEPEKVDKDNEDFQQSNRMYSVNGYTFGSLSGLSMCAED 279 (1065)
T ss_dssp T-CBSSSSBTTCCEEEEEEEEEE--EGGGSTTHHHHHHHHCSCGGGCCTTCHHHHHHTEEEEETTEETTCCCCCEEETTC
T ss_pred c-ccCCCccCCCccceEEEeeee--cCCccccccchhhhhhcCccccccccccccccCcEEEECCccCCCCcceEECCCC
Confidence 5 323323344588999999974 3332221100 00000000000000 1246899999984 7899998 9
Q ss_pred EEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCC
Q 008071 291 KYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSG 369 (579)
Q Consensus 291 ~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g 369 (579)
+|||||+|+|+. ..+.||| +||.|++ +|..++++.|+||||+||+|+++++ | .|.+..........|
T Consensus 280 ~vRlRliNag~~~~~~~~~i-~Gh~f~v---------~p~~~dtv~I~pGer~dVlv~~~~p-G-~y~i~~h~~~h~~~G 347 (1065)
T 2j5w_A 280 RVKWYLFGMGNEVDVHAAFF-HGQALTN---------KNYRIDTINLFPATLFDAYMVAQNP-G-EWMLSCQNLNHLKAG 347 (1065)
T ss_dssp EEEEEEEECSSTTCCEEEEE-TTCCEEE---------TTEEESEEEECBTCEEEEEEECCSC-E-EEEEEECSHHHHHTT
T ss_pred EEEEEEEcCCcccceeEEEE-cCCEEEE---------CCeeecEEEECCCcEEEEEEEeCCC-e-eEEEEecCcchhhCC
Confidence 999999999986 6899999 7999992 5789999999999999999999985 3 787765432100111
Q ss_pred CCCCCCCCccEEEEEecCCCCCCCCCCCC----------------CCCCC-------CCCCCC-------------Cccc
Q 008071 370 DPVNDANGKVMKFIIKKNHELDTWRVPEK----------------LIKYP-------SPNPSS-------------ASRT 413 (579)
Q Consensus 370 ~~~~~~~~~v~~~~v~~~~~~~~~~~P~~----------------L~~~~-------~~~~~~-------------~~~~ 413 (579)
....|.|.+.........|.. +.|.. ++.... ....
T Consensus 348 --------m~~~~~V~~~~~~~~~~~~~g~~~~~~~i~A~e~~wdy~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~ig~~ 419 (1065)
T 2j5w_A 348 --------LQAFFQVQECNKSSSKDNIRGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGS 419 (1065)
T ss_dssp --------CEEEEEEECSCCCCCCCCCTTSEEEEEEEEEEEEEEESCTTSBCTTTCCBTTCTTCTTHHHHCCBTTBCCSE
T ss_pred --------CEEEEEEecCCCccccccccccceeEEEEeceecccccCCCCcccccccccCCCcccchhhhccCCcccCce
Confidence 222334433221110001100 00000 000000 0000
Q ss_pred -eEEEEEeeecCCCCcceEEEcCeecCC-------CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhH
Q 008071 414 -RYIAMYEYTSDIDEPTHLFINGKSYEE-------PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLE 485 (579)
Q Consensus 414 -r~~~l~~~~~~~g~~~~~~iNg~~~~~-------~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~ 485 (579)
+.....+..+ ..|+++...... ...+..+.|++++..|.|.....|+||+||+.|++++.+...
T Consensus 420 y~k~v~~~y~d-----~~f~~~~~~~~~~~~~g~lgpvi~a~~gd~i~i~f~N~~~~~~s~h~hG~~f~~~~~g~~~--- 491 (1065)
T 2j5w_A 420 YKKLVYREYTD-----ASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGTYY--- 491 (1065)
T ss_dssp EEEEEEEEESS-----TTCCSBCCCCGGGGGGTTSCCCEEEETTEEEEEEEEECSSSCBCCEEESSBCCGGGCSBCC---
T ss_pred EeeeeeecccC-----CceEEcCcCCcccccccccCceEEEeCCCEEEEEEEECCCCCccCcccceeeeccCCCccc---
Confidence 1111111111 123444332211 123567899999999999998999999999999998764210
Q ss_pred HhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc---eEEeec
Q 008071 486 EFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG---YVYHCH 562 (579)
Q Consensus 486 ~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg---w~~HCH 562 (579)
. +... +......++...|.||++.+-.-... ...+.-+ ..|- |+||+|
T Consensus 492 ---------~------------~~~~--~~~~~~~~~~~~v~Pg~~~~y~w~v~--~~~~p~~----~dp~c~~~~y~s~ 542 (1065)
T 2j5w_A 492 ---------S------------PNYN--PQSRSVPPSASHVAPTETFTYEWTVP--KEVGPTN----ADPVCLAKMYYSA 542 (1065)
T ss_dssp ---------B------------CC---------CCCCSSCBCTTCEEEEEEECC--GGGSCCS----SSCSEEEEEEECB
T ss_pred ---------c------------cccc--cccCCccCCCcccCCCCcEEEEEEcc--CCcCCCC----CCCCeeEEEEecc
Confidence 0 0000 00011145566778998654432322 2222111 1222 999999
Q ss_pred cccccc--cCccccEEEcC
Q 008071 563 VLDHED--NVMMRPLKLIK 579 (579)
Q Consensus 563 il~Hed--~GMm~~~~V~~ 579 (579)
+..=.| .|++.++.|+|
T Consensus 543 vd~~~d~~sGLiGpllic~ 561 (1065)
T 2j5w_A 543 VDPTKDIFTGLIGPMKICK 561 (1065)
T ss_dssp SSHHHHHHHTCEEEEEEEC
T ss_pred CCcccccccccccceEEec
Confidence 988766 69999998876
No 29
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=1.3e-42 Score=376.34 Aligned_cols=351 Identities=15% Similarity=0.134 Sum_probs=235.1
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCC
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKG 174 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG 174 (579)
+||++ ||+|+|++||+|+|+|+|.+.. ++++||||... .++|+|.||
T Consensus 49 vNG~~-~p~i~v~~Gd~v~~~~~N~~~~---------------------~h~~~~~g~~~-----------~~~~~i~pG 95 (447)
T 2dv6_A 49 IDHKI-NPTLVVHEGETVQVNLVNGEGA---------------------QHDVVVDQYAA-----------RSAIVNGKN 95 (447)
T ss_dssp GTTCB-SCCEEEETTCEEEEEEECSSSS---------------------CBCCEETTTTE-----------ECCCBCSTT
T ss_pred ecCCc-CCeEEEcCCCEEEEEEEcCCCC---------------------ceEEEEccCCc-----------ccceecCCC
Confidence 35999 9999999999999999999886 68999998531 367889999
Q ss_pred CcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCC-----CCCCCCCceeEEEEeeeeecCC
Q 008071 175 PTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLR-----LPSGDEFDRPLVVFDRSFRTDG 249 (579)
Q Consensus 175 ~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~-----lp~~~~~e~~lvl~D~~~~~~g 249 (579)
+++ +|.|.+. ++||||||||..+ |..+||.|.|+|+++... ... ++.. ..+++..+ |+. ...
T Consensus 96 ~~~---~~~f~~~-~~Gt~~y~~~~~~----h~~~Gm~G~i~V~~~~~~-~~~~~~~~~~~~-~~~~p~~~-d~~--~~~ 162 (447)
T 2dv6_A 96 ASS---TFSFVAS-KVGEFNYYCSIAG----HRQAGMEGNIQVLPGNRA-EMKSSGADITRD-PADLPGPI-GPR--QAK 162 (447)
T ss_dssp BEE---EEEEECC-SCEEEEEECCSTT----HHHHTCEEEEEEESSCCC-CCCCSSBCCBCC-TTCSCCCC-CSC--CCC
T ss_pred CeE---EEEEEcC-CCEEEEEEeCCCC----hhhCCCEEEEEEeCCccc-cCCCcchhhccC-hhhcCCcc-ccC--CCc
Confidence 999 9999998 6899999999864 778999999999976521 110 0000 01111111 100 000
Q ss_pred cEEecCCCCCCCCCCCCCCCCCCcEEEECCcc-cCeEEecC-cEEEEEEEecCC-CeeEEEEEcCCCeEEEEecCCCccC
Q 008071 250 SIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA-WPRMTVRR-RKYRFRIINASN-ARFYRFFFTNGLRFIHVAADSAYLG 326 (579)
Q Consensus 250 ~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~-~~~~~l~l~~g~~f~via~DG~~l~ 326 (579)
...+..... . .......+...+.++|||+. .|.+++++ +++||||+|.+. ...+.+|+ ||. ++.||.+
T Consensus 163 ~~~~~l~~~-~-~~~~~~~g~~~~~~~~NG~~pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih~-Hg~----~~~DG~~-- 233 (447)
T 2dv6_A 163 TVRIDLETV-E-VKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDF-HGA----TGPGGAA-- 233 (447)
T ss_dssp EEEEEEEEE-E-EEEEEETTEEEEEEEETTBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEE-TTC----CSGGGGG--
T ss_pred EEEEEEEEE-E-EEEeccCCceeEEEEECCccCCCeEEecCCCEEEEEEEeCCCCceeEEEee-ccc----cCCCCCC--
Confidence 000000000 0 00000012234689999996 79999987 999999999986 35688998 774 3689974
Q ss_pred ccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCC---CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCC
Q 008071 327 RPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPY---PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYP 403 (579)
Q Consensus 327 ~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~---~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~ 403 (579)
+.+.|+||||++++++++++ | +|++...... ....| -.-.+.|.... .+|.
T Consensus 234 -----~~~~i~pG~~~~~~~~~~~~-G-~~~yh~h~~~~~~~~~~G--------l~g~l~v~~~~-----~~P~------ 287 (447)
T 2dv6_A 234 -----AFTQTDPGEETVVTFKALIP-G-IYVYHCATPSVPTHITNG--------MYGLLLVEPEG-----GLPQ------ 287 (447)
T ss_dssp -----GGCCBCTTCEEEEEEECCSC-E-EEEEECCSSSHHHHHHTT--------CEEEEEEECTT-----CSCC------
T ss_pred -----ccEEeCCCCEEEEEEECCCC-e-EEEEEeCCCChHHHHhCC--------CEEEEEEeCCC-----CCCC------
Confidence 23459999999999999876 3 8888765310 00011 11223343321 1221
Q ss_pred CCCCCCCccceEEEEEeee---------------c--CCCCcceEEEcCeecCCC--cccccCCCCeEEEEEEeCC-CCC
Q 008071 404 SPNPSSASRTRYIAMYEYT---------------S--DIDEPTHLFINGKSYEEP--VTETPKAGTSEVWNVINLT-EDN 463 (579)
Q Consensus 404 ~~~~~~~~~~r~~~l~~~~---------------~--~~g~~~~~~iNg~~~~~~--~~~~~~~G~~~~w~l~N~~-~~~ 463 (579)
.+.+..+.+.... . ....+..|+|||+.+... ..+.++.|++++|.|+|.+ ...
T Consensus 288 ------~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~~~v~~g~~vrlrliN~~~~~~ 361 (447)
T 2dv6_A 288 ------VDREFYVMQGEIYTVKSFGTSGEQEMDYEKLINEKPEYFLFNGSVGSLTRSHPLYASVGETVRIFFGVGGPNFT 361 (447)
T ss_dssp ------CSEEEEEEEEEECBSSCTTCCEECCBBHHHHHTTCCSEEEETTSTTCCCCCCCEEECTTCEEEEEEEEEESSCC
T ss_pred ------CCeeEEEEecccccCCcccccccccCChHHhhccCCCEEEECCcccCCCCCcceEECCCCEEEEEEEeCCCCce
Confidence 0000011111000 0 012345689999988632 3567899999999999987 469
Q ss_pred ceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc-ccceEEeCCCcEEEEEEEEeecc
Q 008071 464 HPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG-WKNVYKMTPGYVTKILVRFSYIH 542 (579)
Q Consensus 464 HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~-~kDTv~v~p~~~v~i~~rf~~~~ 542 (579)
||||||||+|+||+.+ |.... .+. ||||+.|+||+++.|+++++
T Consensus 362 h~~hlhGh~f~vv~~d----------------------------G~~~~----~p~~~~dtv~l~pg~r~~i~~~~~--- 406 (447)
T 2dv6_A 362 SSFHVIGEIFDHVYSL----------------------------GSVVS----PPLIGVQTVSVPPGGATIVDFKID--- 406 (447)
T ss_dssp EEEEEETCCEEEECGG----------------------------GCSSS----CCEEEESEEEECTTEEEEEEEECC---
T ss_pred EeEEEcCcEEEEEEcC----------------------------CcccC----CCcccccEEEECCCcEEEEEEECC---
Confidence 9999999999999873 21111 123 89999999999988866664
Q ss_pred CCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 543 SNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 543 ~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
||| |++|||+++|++.|||+.|+|.
T Consensus 407 -----------~pG~~~~hch~~~h~~~Gm~~~~~v~ 432 (447)
T 2dv6_A 407 -----------RAGRYILVDHALSRLEHGLVGFLNVD 432 (447)
T ss_dssp -----------SCEEEEEEESSGGGGGGTCCEEEEEC
T ss_pred -----------CCEEEEEEecCcCccccCCEEEEEEe
Confidence 789 9999999999999999999984
No 30
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=100.00 E-value=5.8e-42 Score=358.09 Aligned_cols=286 Identities=16% Similarity=0.151 Sum_probs=203.2
Q ss_pred CCCCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEE
Q 008071 35 PSQLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYV 114 (579)
Q Consensus 35 ~~~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v 114 (579)
...++++...|..|+.+.+......+..+..+++|++.+..+++.++...+.+|+|| |++|||+|+|++||+|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~n-----g~~pgP~i~v~~Gd~v~v 83 (340)
T 2bw4_A 9 ISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFN-----GSVPGPLMVVHENDYVEL 83 (340)
T ss_dssp GGGSCEEECCCCCTTSCCCCCSBCSSSCCEEEEEEEEEEEEEECSTTCCEEEEEEET-----TBSSCCEEEEETTCEEEE
T ss_pred ccccceeeeeeecCCCCCcccccccCCCcEEEEEEEEEEEEEEECCCCcEEEEEEEC-----CCCCCCcEEEcCCCEEEE
Confidence 334666665554444432211000122223578999999999998756578999997 999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCce
Q 008071 115 TWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGN 192 (579)
Q Consensus 115 ~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt 192 (579)
+|+|.+. ++||||++.... .||.+. +++ |.||++| +|+|+++ ++||
T Consensus 84 ~~~N~~~------------------------~~~~hg~~~~~~~~~~~~~~--~~~--i~PG~~~---~y~~~~~-~~Gt 131 (340)
T 2bw4_A 84 RLINPDT------------------------NTLLHNIDFHAATGALGGGA--LTQ--VNPGEET---TLRFKAT-KPGV 131 (340)
T ss_dssp EEEECTT------------------------CCSCBCCEETTSCSGGGGGG--GCC--BCTTEEE---EEEEECC-SCEE
T ss_pred EEEeCCC------------------------CCccCcceeCCcCCCCCCcc--ceE--eCCCCEE---EEEEECC-CCeE
Confidence 9999863 345555544332 223222 554 9999999 9999998 7999
Q ss_pred eeeecCCCChhhhhhcccceEEEEEEcCCCC-CCCCCCCCCCCceeEEEEeeee--ecCCcEE-ecCCCCCCCCCCCCCC
Q 008071 193 LWYHDHAMGLTRINLLAGLVGAYIVRHHDVE-TPLRLPSGDEFDRPLVVFDRSF--RTDGSIY-MNSTGNNPSIHPQWQP 268 (579)
Q Consensus 193 ~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~-~~~~lp~~~~~e~~lvl~D~~~--~~~g~~~-~~~~g~~~~~~~~~~~ 268 (579)
||||||.++.+..|+++||+|+|||++++.. ...+.|..+++|++|+++||++ +.+|.+. +...+........++.
T Consensus 132 ~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 211 (340)
T 2bw4_A 132 FVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTYDKIYYVGEQDFYVPKDEAGNYKKYETPGEAYEDAVKAMR 211 (340)
T ss_dssp EEEECCCTTCHHHHHHTTCEEEEEEECTBCEECTTSCEECCSEEEEEEEEEECCCBCTTSCBCCCCSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCchhhHHhCcCEEEEEEccCcCcccccCCCcCcceeEEEeeeeeeeccccCCcccccccccccccchhhHhh
Confidence 9999999998899999999999999965410 1122344568899999999988 4455542 1100000000000112
Q ss_pred CCCCcEEEECCccc-----CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccE-EecEEEeCcceE
Q 008071 269 EYFGDAIIVNGKAW-----PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPV-VTNETLLAPSEI 341 (579)
Q Consensus 269 ~~~gd~~~VNG~~~-----P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~-~~~~l~l~pgeR 341 (579)
+..++.++|||+.+ |.+++++ +++| |+|+++++.+.+++.+||.|+|++ ||+++..|. .++++.|+||||
T Consensus 212 ~~~~~~~~iNG~~~~~~~~~~l~v~~G~r~R--l~n~~~~~~~~~~~i~gh~~~Vi~-dG~~~~~p~~~~dtv~l~pGer 288 (340)
T 2bw4_A 212 TLTPTHIVFNGAVGALTGDHALTAAVGERVL--VVHSQANRDTRPHLIGGHGDYVWA-TGKFRNPPDLDQETWLIPGGTA 288 (340)
T ss_dssp TTCCSEEEETTSTTTTSGGGCEEEETTCEEE--EEEEESSSCBCEEEETCCEEEEET-TCCTTSCCEEEESCCCBCTTEE
T ss_pred cCCCCEEEECCccCCccCCCceEcCCCCEEE--EEECCCCCccceEEecCcceEEeC-CCcccCCccccceEEEeCCCce
Confidence 34678999999996 7899998 6665 556666666777766899999997 999997775 489999999999
Q ss_pred EEEEEEcCCCCCcEEEEecCC
Q 008071 342 ADVVIDFSESKSDVAILANDA 362 (579)
Q Consensus 342 ~dvlv~~~~~~g~~~~l~~~~ 362 (579)
+||+|+|+++ | .|.+....
T Consensus 289 ~~v~v~~~~p-G-~y~~~~h~ 307 (340)
T 2bw4_A 289 GAAFYTFRQP-G-VYAYVNHN 307 (340)
T ss_dssp EEEEEECCSC-E-EEEEEESS
T ss_pred EEEEEECCCC-e-eeEEEcCc
Confidence 9999999985 4 78877653
No 31
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=100.00 E-value=3.7e-42 Score=372.04 Aligned_cols=271 Identities=20% Similarity=0.244 Sum_probs=215.0
Q ss_pred CCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEE
Q 008071 37 QLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTW 116 (579)
Q Consensus 37 ~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~ 116 (579)
.++++...|..||.+.+......+ +..+++|++.+..+++.++. .+.+|+|| |++|||+|++++||+|+|+|
T Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~l~~~~~~~~~~~g~-~~~~~~~n-----g~~pgp~i~v~~Gd~v~v~~ 74 (442)
T 2zoo_A 3 NLKTEQAILTPPPMVPPAINRDHS--AKVVINLETREQVGRIADGV-EYVFWSFG-----ETVPGSFIRVREGDEIEFNL 74 (442)
T ss_dssp -CCEEECCCBCTTCCCCCCCCSSC--CEEEEEEEEEEEEEEEETTE-EEEEEEET-----TBSSCCBEEEETTCEEEEEE
T ss_pred CCcchhhhcccCCCCCCCcccCCC--cEEEEEEEEEEEEEEcCCCc-EEEEEEEC-----CcCCCCcEEEeCCCEEEEEE
Confidence 456777777777776654332123 23578899999988886665 78999997 99999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeee
Q 008071 117 QNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYH 196 (579)
Q Consensus 117 ~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH 196 (579)
+|.|+.. .++++||||++. +||.++ .+ .|.||+++ +|+|+++ ++||||||
T Consensus 75 ~N~l~~~-------------------~~~~iH~HG~~~---~dG~~~--~~--~i~pg~~~---~y~f~~~-~~Gt~~yH 124 (442)
T 2zoo_A 75 SNHPSSK-------------------MPHNIDLHAVTG---PGGGAE--SS--FTAPGHTS---TFNFKAL-NPGLYIYH 124 (442)
T ss_dssp EECTTCS-------------------SCBCCEETTCCS---GGGGGG--GC--CBCTTCEE---EEEEECC-SCEEEEEE
T ss_pred EECCCCC-------------------CCCCEEecCCcC---CCCCCc--cE--EECCCCEE---EEEEEcC-CCeEEEEe
Confidence 9998741 179999999874 688875 33 48999999 9999997 89999999
Q ss_pred cCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecC-CcEEecCCCCCCCCCCCCCCCCCCcEE
Q 008071 197 DHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTD-GSIYMNSTGNNPSIHPQWQPEYFGDAI 275 (579)
Q Consensus 197 ~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~-g~~~~~~~g~~~~~~~~~~~~~~gd~~ 275 (579)
||.++ +..|+++||+|+|||++++ . +|. +++|++|+++||+++.+ +..-.... +.....+..++.+
T Consensus 125 ~H~~~-~~~~~~~Gl~G~~iv~~~~-~----~~~-~d~e~~l~l~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 191 (442)
T 2zoo_A 125 CATAP-VGMHIANGMYGLILVEPKE-G----LAP-VDREYYLVQGDFYTKGEFGEAGLQPF------DMAKAIDEDADYV 191 (442)
T ss_dssp CCCSS-HHHHHHTTCEEEEEEECTT-C----CCC-CSEEEEEEEEEECBSSCTTCCEEECB------CHHHHHTTCCSEE
T ss_pred cCCCC-hHHHHhCccEEEEEEeCCC-C----CCC-CCceEEEEeeeeeccCcccccccccC------ChhHhccCCCCEE
Confidence 99976 6789999999999999433 2 343 58999999999987654 21100000 0000113457899
Q ss_pred EECCccc-----CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 276 IVNGKAW-----PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 276 ~VNG~~~-----P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
+|||+.+ +.+.+++ ++|||||+|+|+.+.+.||| +||.|++|+.||+++ +|..++++.|+||||+||+|+++
T Consensus 192 liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i-~g~~~~vi~~DG~~~-~p~~~~~~~l~pg~r~~v~v~~~ 269 (442)
T 2zoo_A 192 VFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHV-IGEIFDTVYVEGGSL-KNHNVQTTLIPAGGAAIVEFKVE 269 (442)
T ss_dssp EETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEE-ETCCBSEEEGGGSSC-EECSBSEEEECTTEEEEEEEECC
T ss_pred EECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEE-cCCEEEEEecCCccC-CCccceEEEECCCeeEEEEEEcC
Confidence 9999987 4689987 89999999999989999999 599999999999999 59999999999999999999999
Q ss_pred CCCCcEEEEecCC
Q 008071 350 ESKSDVAILANDA 362 (579)
Q Consensus 350 ~~~g~~~~l~~~~ 362 (579)
++ | .|.+....
T Consensus 270 ~~-G-~y~~~~~~ 280 (442)
T 2zoo_A 270 VP-G-TFILVDHS 280 (442)
T ss_dssp SC-E-EEEEEESS
T ss_pred CC-C-eEEEEecc
Confidence 85 3 78887653
No 32
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=100.00 E-value=1.9e-41 Score=353.18 Aligned_cols=281 Identities=15% Similarity=0.175 Sum_probs=203.9
Q ss_pred CCccccccCCCCCccccccccCCCCccceeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEE
Q 008071 37 QLEMFVDELPDMPKIKCFEDAANGAPKPKKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTW 116 (579)
Q Consensus 37 ~~~~~~~~lp~pp~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~ 116 (579)
.++++...|..|+.+.+.........+..+++|++.+.++++.++. .+.+|+|| |++|||+|++++||+|+|+|
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~~n-----g~~pgP~i~~~~Gd~v~v~~ 78 (333)
T 1mzy_A 5 NLPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDA-YLQAMTFD-----GSIPGPLMIVHEGDYVELTL 78 (333)
T ss_dssp TSCEEECCCCCTTSBCSCCSSCSSSCCEEEEEEEEEEEEEEEETTE-EEEEEEET-----TBSSCCEEEEETTCEEEEEE
T ss_pred ccceeeeeeccCCCCCccccccCCCCcEEEEEEEEEEEEEEcCCCc-EEEEEEEC-----CccCCCcEEecCCCEEEEEE
Confidence 3555655555544432211110122233578999999888886555 78999997 99999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC--CCCCCCccccccccCCCCcceeeeEEEeCCCCCceee
Q 008071 117 QNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE--SDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLW 194 (579)
Q Consensus 117 ~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~--~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~w 194 (579)
+|. .+++||||++.... .||.+. +++ |.||++| +|+|+++ ++||||
T Consensus 79 ~N~------------------------~~~~h~Hg~~~~~~~~~~~~~~--~~~--i~PG~~~---~y~f~~~-~~Gt~~ 126 (333)
T 1mzy_A 79 INP------------------------PENTMPHNIDFHAATGALGGGG--LTL--INPGEKV---VLRFKAT-RAGAFV 126 (333)
T ss_dssp EEC------------------------TTCCSCBCCEETTSCSGGGGGG--GCC--BCTTEEE---EEEEECC-SCEEEE
T ss_pred EEC------------------------CCCcccccceecCCCCCCCCCc--eeE--eCCCCEE---EEEEECC-CCEEEE
Confidence 998 37899999987764 233333 554 9999999 9999998 799999
Q ss_pred eecCCCC-hhhhhhcccceEEEEEEcCCCCC--CCCCCCCCCCceeEEEEeeee--ecCCcEE-ecCCCCCCCCCCCCCC
Q 008071 195 YHDHAMG-LTRINLLAGLVGAYIVRHHDVET--PLRLPSGDEFDRPLVVFDRSF--RTDGSIY-MNSTGNNPSIHPQWQP 268 (579)
Q Consensus 195 YH~H~~g-~t~~qv~~GL~G~lIV~dp~~~~--~~~lp~~~~~e~~lvl~D~~~--~~~g~~~-~~~~g~~~~~~~~~~~ 268 (579)
||||.++ .+..|+++||+|+|||++++ +. +.+.|..+|+|++|+++||++ +.++++. +...+........++.
T Consensus 127 yH~h~~~~~~~~~~~~Gl~G~~iV~~~~-~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 205 (333)
T 1mzy_A 127 YHCAPGGPMIPWHVVSGMAGCIMVLPRD-GLKDHEGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMD 205 (333)
T ss_dssp EECCCSTTHHHHHHHTTCEEEEEEECTT-CCBCTTSCBCCCSEEEEEEEEEECCCBCTTSCBCCCSSHHHHHHHHHHHHT
T ss_pred EeecCCcccchhhhhCCCEEEEEEccCc-CccccccCCCccchheeeeeeeeccCccccccccccccccccccchhHHhh
Confidence 9999987 78889999999999999433 21 223455578899999999988 4445431 1100000000001112
Q ss_pred CCCCcEEEECCccc-----CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccE-EecEEEeCcceE
Q 008071 269 EYFGDAIIVNGKAW-----PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPV-VTNETLLAPSEI 341 (579)
Q Consensus 269 ~~~gd~~~VNG~~~-----P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~-~~~~l~l~pgeR 341 (579)
+..++.++|||+.+ +.++|++ +++||| |+++++.+.|++.++|.|+|++ ||.+++.|. .++++.|+||||
T Consensus 206 ~~~~~~~~ING~~~~~~~~~~l~v~~Ger~Rl~--n~~~~~~~~~h~i~~h~~~Vi~-dG~~~~~p~~~~dtv~l~pGer 282 (333)
T 1mzy_A 206 TLIPSHIVFNGAVGALTGEGALKAKVGDNVLFV--HSQPNRDSRPHLIGGHGDLVWE-TGKFHNAPERDLETWFIRGGTA 282 (333)
T ss_dssp TTCCSEEEETTSTTTTSGGGCEEEETTCEEEEE--EEESSSCBCEEEETCCEEEEET-TCCTTSCCEEEESBCCBCTTEE
T ss_pred ccCCcEEEECCcccccCCCcceEecCCCEEEEE--ECCCCCccccEEECCCCeEEEe-CCcccCCCccCcceEEECCCce
Confidence 35679999999985 4599988 666654 5555566667766899999999 999997776 489999999999
Q ss_pred EEEEEEcCCCCCcEEEEecC
Q 008071 342 ADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 342 ~dvlv~~~~~~g~~~~l~~~ 361 (579)
+||+|+|+++ | +|.+...
T Consensus 283 ~~v~v~a~~p-G-~y~~~ch 300 (333)
T 1mzy_A 283 GAALYKFLQP-G-VYAYVNH 300 (333)
T ss_dssp EEEEEECCSC-E-EEEEEES
T ss_pred EEEEEEcCCC-E-EEEEecC
Confidence 9999999986 3 7777654
No 33
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=100.00 E-value=1.4e-41 Score=349.63 Aligned_cols=228 Identities=17% Similarity=0.139 Sum_probs=165.5
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcc----c--cc
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSW----F--TA 168 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~----~--t~ 168 (579)
.| ++|||+|||++||+|+|+|+|.|+. +++|||||+++++.+||+|... + .+
T Consensus 54 ~n-~~pGP~I~v~~Gd~v~v~~~N~l~~---------------------~~siH~HGl~~~~~~dG~~~~dg~~~~~~~~ 111 (306)
T 1sdd_A 54 TS-GLLGPTLYAEVGDIMKVHFKNKAHK---------------------PLSIHAQGIKYSKFSEGASYSDHTLPMEKMD 111 (306)
T ss_dssp SC-CSCCCCEEEETTCEEEEEEEECSSS---------------------CBCCEEESSCCCTTTSCCCSCCCCCHHHHTT
T ss_pred cC-CccCCEEEEeCCCEEEEEEEECCCC---------------------cccEeecceecccccCCCccCCCCcccccCC
Confidence 35 5899999999999999999999987 8999999999999999998621 1 26
Q ss_pred cccCCCCcceeeeEEEeCCCCC---------ceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEE
Q 008071 169 GFKEKGPTWTKKTYHYHNMQQP---------GNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLV 239 (579)
Q Consensus 169 ~~i~PG~~~~~~~y~~~~~~~~---------Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lv 239 (579)
|+|.||++| +|+|++++++ ||||||||... ..|+++||+|+|||+++......+.+..+++|++|+
T Consensus 112 ~~I~PG~~~---~Y~f~~~~~~gp~~~d~~~GT~wYHsH~~~--~~q~~~GL~G~liV~~~~~~~~~~~~~~~d~e~~l~ 186 (306)
T 1sdd_A 112 DAVAPGQEY---TYEWIISEHSGPTHDDPPCLTHIYYSYVNL--VEDFNSGLIGPLLICKKGTLTEDGTQKMFEKQHVLM 186 (306)
T ss_dssp TCBCTTCEE---EEEEECCGGGSCCSSSCSEEEEEEECCSSS--HHHHHTTCCEEEEEECTTCBCTTSSBSSSCCCCCCB
T ss_pred CccCCCCeE---EEEEEeCCccCCCCCCCCceEEEEeccCCc--hhhhccCceEEEEEccCCCCCccCCcCcccceEEEE
Confidence 899999999 9999997553 79999999743 458999999999999764221122333347788888
Q ss_pred EEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEe
Q 008071 240 VFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVA 319 (579)
Q Consensus 240 l~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via 319 (579)
++|| +.+++ |.
T Consensus 187 ~~d~--d~~~~---------------~~---------------------------------------------------- 197 (306)
T 1sdd_A 187 FAVF--DESKS---------------WN---------------------------------------------------- 197 (306)
T ss_dssp CCEE--ETTSS---------------SS----------------------------------------------------
T ss_pred EEec--ccccc---------------cc----------------------------------------------------
Confidence 8885 22100 00
Q ss_pred cCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCC
Q 008071 320 ADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKL 399 (579)
Q Consensus 320 ~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L 399 (579)
+ +
T Consensus 198 -------------------------------------------------~--------------------------~--- 199 (306)
T 1sdd_A 198 -------------------------------------------------Q--------------------------T--- 199 (306)
T ss_dssp -------------------------------------------------C--------------------------C---
T ss_pred -------------------------------------------------c--------------------------C---
Confidence 0 0
Q ss_pred CCCCCCCCCCCccceEEEEEeeecCCCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC--CceeeeeeccEEEEe
Q 008071 400 IKYPSPNPSSASRTRYIAMYEYTSDIDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED--NHPLHIHLGLFVVLD 477 (579)
Q Consensus 400 ~~~~~~~~~~~~~~r~~~l~~~~~~~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~--~HP~HlHg~~Fqvl~ 477 (579)
. ...++|||+.|.....+.++.|++++|.|.|.+.. .|+|||||+.|++
T Consensus 200 --------~-------------------~~~~~ING~~~~~~p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-- 250 (306)
T 1sdd_A 200 --------S-------------------SLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-- 250 (306)
T ss_dssp --------C-------------------CEEECSSSCCSSCCCCCCCCCC------BBCCCSSSCEECCBCSSTTCEE--
T ss_pred --------C-------------------CcceeeCCEecCCCcceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee--
Confidence 0 00256888887654557789999999999999764 7999999999975
Q ss_pred EechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-
Q 008071 478 QRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG- 556 (579)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg- 556 (579)
. | .++||+.|.||+++.|+++++ +||
T Consensus 251 -d----------------------------G----------~~~dtv~l~pger~~v~~~~~--------------~pG~ 277 (306)
T 1sdd_A 251 -N----------------------------H----------HKISAITLVSATSTTANMTVS--------------PEGR 277 (306)
T ss_dssp -T----------------------------T----------EECSCCCEETTCCBC----------------------CC
T ss_pred -C----------------------------C----------EEcceEEECCCcEEEEEEEcC--------------CCeE
Confidence 1 3 268999999999998887775 678
Q ss_pred eEEeeccccccccCccccEEEc
Q 008071 557 YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 557 w~~HCHil~Hed~GMm~~~~V~ 578 (579)
|+||||+++|++.|||+.|+|.
T Consensus 278 ~~~hch~~~H~~~GM~~~~~V~ 299 (306)
T 1sdd_A 278 WTIASLIPRHFQAGMQAYIDIK 299 (306)
T ss_dssp CCCBCCSTTTGGGTCBCCC---
T ss_pred EEEEeCChHHHhcCCeEEEEEe
Confidence 9999999999999999999985
No 34
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=100.00 E-value=4.9e-41 Score=382.38 Aligned_cols=281 Identities=16% Similarity=0.212 Sum_probs=204.7
Q ss_pred eeEEEeEEEEEEEecCCCC-----------------CcceeeecCCCC-----------CCCCCccEEEEECCCEEEEEE
Q 008071 65 KKLKIGMFKKKWKFHRDLP-----------------PTPVYAYGTSKH-----------TATVPGPTIEALHGIDTYVTW 116 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~-----------------~~~~w~y~~~~~-----------ng~~PGPtI~v~~Gd~v~v~~ 116 (579)
.+|.|.+.|..|...++.. .+..+.|..... +.++|||+|||++||+|+|+|
T Consensus 134 r~y~i~a~e~~wdyap~~~~~~~~~~~~~~~g~~y~k~~~~~y~~~~f~~~~~~~~~~~~l~~pGP~Ir~~~GD~v~v~~ 213 (770)
T 2r7e_B 134 RHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTF 213 (770)
T ss_dssp EEEEEEEEECCCCCCSCCCCTTTTSSCCCCCCCCCCCEEEEECSSSCTTTTCCCCSTTTTCCSCCCCCCCCSSSCEEEEE
T ss_pred EEEEEEEEEEEEeecCCCcccccccccccccccceeeEEEEEeccCceeccccccccccccCCCCCeEEEEcCCEEEEEE
Confidence 5889999999887766642 133455653332 337999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCC-CCCCccccccccCCCCcceeeeEEEeCCC-------
Q 008071 117 QNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESD-GNANSWFTAGFKEKGPTWTKKTYHYHNMQ------- 188 (579)
Q Consensus 117 ~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~D-G~p~~~~t~~~i~PG~~~~~~~y~~~~~~------- 188 (579)
+|.|+. +++|||||++++..+| |+|. ++|+|+||++| +|+|++.+
T Consensus 214 ~N~l~~---------------------~~siH~HG~~~~~~~~dG~~~---~~~~I~PG~~~---tY~f~~~~~~gp~~~ 266 (770)
T 2r7e_B 214 RNQASR---------------------PYSFYSSLISYEEDQRQGAEP---RKNFVKPNETK---TYFWKVQHHMAPTKD 266 (770)
T ss_dssp ECCSSS---------------------CCCCCBTTCCCCCCSSSCTTT---TSSCCCSSCEE---EEECCCCSSSSCCSS
T ss_pred EECCCC---------------------CcceeecccccccccCCCCcC---ccCccCCCCeE---EEEEEecCccCCccC
Confidence 999997 8999999999998877 9885 78999999999 99999985
Q ss_pred --CCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCC
Q 008071 189 --QPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQW 266 (579)
Q Consensus 189 --~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~ 266 (579)
++||||||||.+. ..|+++||+|+|||+++....+...+..+++|++|+++++ +++++++
T Consensus 267 d~~~Gt~wYHsh~~~--~~q~~~GL~G~liV~~~~~~~~~~~~~~~d~E~vl~~~~~--de~~swy-------------- 328 (770)
T 2r7e_B 267 EFDCKAWAYSSDVDL--EKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIF--DETKSWY-------------- 328 (770)
T ss_dssp CCSEEEEEECCCSSS--SHHHHTSCCEEEEEECSTTSCSSSCCCCSSEEEECCCCEE--CCSSSSC--------------
T ss_pred CCCCeeEEeeccCCc--HHHHhCCceeeEEECCCcccccccCCCccceEEEEEEeec--Cccccch--------------
Confidence 8999999999975 3489999999999997652211111222367888887763 3221110
Q ss_pred CCCCCCcEEEECCcccCeEEecCcEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEE
Q 008071 267 QPEYFGDAIIVNGKAWPRMTVRRRKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVI 346 (579)
Q Consensus 267 ~~~~~gd~~~VNG~~~P~~~v~~~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv 346 (579)
+ |.+ + + +
T Consensus 329 ------------------------------------------~-----------~~~-~-~-------------~----- 335 (770)
T 2r7e_B 329 ------------------------------------------F-----------TEN-M-E-------------R----- 335 (770)
T ss_dssp ------------------------------------------T-----------TGG-G-S-------------S-----
T ss_pred ------------------------------------------h-----------ccc-h-h-------------h-----
Confidence 0 000 0 0 0
Q ss_pred EcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCC
Q 008071 347 DFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDID 426 (579)
Q Consensus 347 ~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g 426 (579)
+...+. . + ... + + .+. .
T Consensus 336 -~~~~p~---------------~---------~-----~~~---d----~----~~~----------------------~ 352 (770)
T 2r7e_B 336 -NCRAPC---------------N---------I-----QME---D----P----TFK----------------------E 352 (770)
T ss_dssp -CSCCSS---------------C---------C-----CSS---S----S----SST----------------------T
T ss_pred -cccCcc---------------c---------c-----ccC---C----c----ccc----------------------c
Confidence 000000 0 0 000 0 0 000 0
Q ss_pred CcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCC--CceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccc
Q 008071 427 EPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTED--NHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISK 504 (579)
Q Consensus 427 ~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~--~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 504 (579)
....|+|||+.|.....+.++.|++++|.|+|.+.+ .||||||||.|+|++.+
T Consensus 353 ~~~~~~ING~~~~~~~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~d------------------------- 407 (770)
T 2r7e_B 353 NYRFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKE------------------------- 407 (770)
T ss_dssp TSCEECTTSCTTTTCCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSS-------------------------
T ss_pred cCCccccCCccCCCCCCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecC-------------------------
Confidence 011378999998766667899999999999998753 89999999999998651
Q ss_pred cccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 505 YARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 505 ~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
| .|+|||.|.||+++.|+|+++ +|| |++|||+++|++.|||..|+|.
T Consensus 408 ---g----------~~~Dtv~l~Pg~~~~v~~~ad--------------~pG~w~~hcH~~~H~~~GM~~~~~V~ 455 (770)
T 2r7e_B 408 ---E----------YKMALYNLYPGVFETVEMLPS--------------KAGIWRVECLIGEHLHAGMSTLFLVY 455 (770)
T ss_dssp ---C----------CEESEEECCTTCCCEEEECCS--------------SCBCCCBCCCSHHHHTTBCCCCCCBC
T ss_pred ---C----------ceeeEEEECCCeEEEEEEEeC--------------CCCceEEEeccccccccccccccccc
Confidence 2 389999999999988866554 789 9999999999999999999884
No 35
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=2.1e-38 Score=373.98 Aligned_cols=359 Identities=16% Similarity=0.152 Sum_probs=235.6
Q ss_pred CCCCCCc--cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC---CCCCCCCcccccc
Q 008071 95 HTATVPG--PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP---ESDGNANSWFTAG 169 (579)
Q Consensus 95 ~ng~~PG--PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~---~~DG~p~~~~t~~ 169 (579)
+||++|| |+|++++||+|+++|.|. .+.+||||++... .+||.+. .| |
T Consensus 623 iNG~~~g~~P~l~~~~gd~v~~~v~~~------------------------g~~~~~Hgl~~~g~t~~~dG~~~--~t-~ 675 (1065)
T 2j5w_A 623 MNGFMYGNQPGLTMCKGDSVVWYLFSA------------------------GNEADVHGIYFSGNTYLWRGERR--DT-A 675 (1065)
T ss_dssp ETTBCTTCCCCCEEETTCCEEEEEECC------------------------CSTTCCEEEEETTCCEEETTEEE--SE-E
T ss_pred EeeEecCCCCceEEeCCCEEEEEEEcC------------------------CCcceEEeeEEeCCceeecCeec--ce-E
Confidence 5799999 889999999999999975 3558999997766 3899986 56 9
Q ss_pred ccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEE----Eeeee
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVV----FDRSF 245 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl----~D~~~ 245 (579)
+|.||.++ +|+|.+. ++||||||||.. .|..+||.|.|+|+++. .....+ ..++.|.+++| +||.+
T Consensus 676 ~i~pg~~~---t~~~~~~-~~Gt~~~h~h~~----~~~~~Gm~g~~~V~~~~-~~~~~~-~~yd~e~~~~iaa~~~dW~~ 745 (1065)
T 2j5w_A 676 NLFPQTSL---TLHMWPD-TEGTFNVECLTT----DHYTGGMKQKYTVNQCR-RQSEDS-TFYLGERTYYIAAVEVEWDY 745 (1065)
T ss_dssp EECTTCEE---EEEECCC-SCEEEEEEECSH----HHHHTTCEEEEEEECCS-CCCSCC-CCCSEEEEEEEEEEEEEEES
T ss_pred eecCCceE---EEEEecC-CCeEEEEecCCC----cccCCCcEEEEEEcCCc-cccCCc-cCCCcceEEEEeeeeccccC
Confidence 99999999 9999998 999999999995 47889999999999764 211221 23577889999 89976
Q ss_pred ecCCcEE---ecCCCCCCCCC-CCCCCCCCCc-------------EEEE----------CCcccCeEEecC-cEEEEEEE
Q 008071 246 RTDGSIY---MNSTGNNPSIH-PQWQPEYFGD-------------AIIV----------NGKAWPRMTVRR-RKYRFRII 297 (579)
Q Consensus 246 ~~~g~~~---~~~~g~~~~~~-~~~~~~~~gd-------------~~~V----------NG~~~P~~~v~~-~~~RlRll 297 (579)
.....+. .+..+..|... ..-.....|. .+++ -+...|.|.++. +++|+|+.
T Consensus 746 ~~~~~~~~~~~~~~~~~p~~~~~n~~~~~iG~tY~k~~y~~~~d~tft~~~~r~~~~~~v~~pGP~I~v~~Gd~v~v~l~ 825 (1065)
T 2j5w_A 746 SPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFK 825 (1065)
T ss_dssp CSCCHHHHHHHHHHTCCCCCTTTCCTTTCCCSEEEEEEEEEESSTTCCSBCCCCGGGGGGTTSCCCEEEETTEEEEEEEE
T ss_pred CcchhhhhhccCCCccCccceeecCCCccccceEeeeEEEEEcCCcceecccCCccccccCCCCCEEEEecCCEEEEEEE
Confidence 5544321 01111111100 0000000111 1222 122337899988 99999999
Q ss_pred ecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCC--------cEEEEecCCCC--CCC
Q 008071 298 NASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKS--------DVAILANDAPY--PYP 367 (579)
Q Consensus 298 Na~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g--------~~~~l~~~~~~--~~~ 367 (579)
|... +.+.||. ||.. +... |. ..+.|||++...+...+..| .+|+....... .+.
T Consensus 826 N~~~-~~~sih~-HGl~--~~~~-~~----------~~i~PG~~~ty~~~~~~~~gp~~~~~~~gt~wYhsh~~~~~q~~ 890 (1065)
T 2j5w_A 826 NMAT-RPYSIHA-HGVQ--TESS-TV----------TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLY 890 (1065)
T ss_dssp ECSS-SCBCCEE-SSCB--CSCS-CC----------CCBCTTCEEEEEEECCGGGSCCTTSCSEEEEEEECCTTHHHHHH
T ss_pred eCCC-CCceEee-cccc--ccCC-CC----------ceeCCCCeEEEEEEecCccCCccccCCceEEEEecCCChHHhhh
Confidence 9965 5688888 6733 3222 21 24679998777776654211 25555443210 000
Q ss_pred CCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec----------------C---C---
Q 008071 368 SGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS----------------D---I--- 425 (579)
Q Consensus 368 ~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~----------------~---~--- 425 (579)
.| -.-.+.|..... +. + +..+...+..+.+..+.. . .
T Consensus 891 ~G--------L~G~liV~~~~~-----l~----~----~~~~~d~D~~l~~~~~d~~~~~y~~~n~~~~~~~P~~v~~~~ 949 (1065)
T 2j5w_A 891 SG--------LIGPLIVCRRPY-----LK----V----FNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDD 949 (1065)
T ss_dssp TT--------CEEEEEEECCC------------------CCCCEEEEEEEEEEEEGGGSTTHHHHHHHHCSCGGGCCTTC
T ss_pred cc--------ccceeEecCccc-----cc----c----cCCCcceEEEEEEEeecCCcceeeccCcccccCCccccCcch
Confidence 11 001122222110 00 0 000011111111111000 0 0
Q ss_pred ----CCcceEEEcCeecCCCcccccCCCCeEEEEEEeCC--CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCccc
Q 008071 426 ----DEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLT--EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIK 499 (579)
Q Consensus 426 ----g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~--~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~ 499 (579)
.....|+|||+.|.....+.++.|++++|.|.|.+ .+.|||||||++|+|+++
T Consensus 950 ~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~vr~~l~N~g~~~~~HpfHlHG~~F~vv~~--------------------- 1008 (1065)
T 2j5w_A 950 EEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHR--------------------- 1008 (1065)
T ss_dssp HHHHHHTEEEEETTBCTTCCCCCEEETTCEEEEEEEECCSTTCCEEEEESSCCEEETTT---------------------
T ss_pred hhhhccCceEEECCccCCCCccEEeCCCCEEEEEEEeCCCCCcceeEEEcccEEEEEec---------------------
Confidence 00124899999998777788999999999999985 569999999999999964
Q ss_pred ccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 500 CHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 500 ~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
| +.|||||.|+||++++|+++|+ ||| |+||||+++|++.|||+.|+|.
T Consensus 1009 --------~---------p~~~DTv~v~pg~~~~v~~~ad--------------~pG~w~~HCH~~~H~~~GM~~~~~V~ 1057 (1065)
T 2j5w_A 1009 --------G---------VYSSDVFDIFPGTYQTLEMFPR--------------TPGIWLLHCHVTDHIHAGMETTYTVL 1057 (1065)
T ss_dssp --------T---------CEEESEEEECTTCEEEEEECCC--------------SCEEEEEEECCHHHHHTTCEEEEEEE
T ss_pred --------C---------CceeeEEEECCCCeEEEEEECC--------------CCeeEEEEeCCHHHHhcCCcEEEEEe
Confidence 2 3599999999999988866554 889 9999999999999999999986
No 36
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=100.00 E-value=5.9e-38 Score=354.15 Aligned_cols=226 Identities=17% Similarity=0.242 Sum_probs=165.3
Q ss_pred CCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcc------cccc
Q 008071 96 TATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSW------FTAG 169 (579)
Q Consensus 96 ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~------~t~~ 169 (579)
++++|||+|||++||+|+|+|+|.|+. +++|||||+++++.+||+|... .+||
T Consensus 63 ~~~~pGP~I~~~~Gd~v~v~~~N~l~~---------------------~~siH~HGl~~~~~~DG~~~~~~~~~~~~~~~ 121 (647)
T 1sdd_B 63 HLGILGPVIRAEVDDVIQVRFKNLASR---------------------PYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDN 121 (647)
T ss_dssp GGTTSCCCEEEETTCEEEEEECCCSSS---------------------CBCCEEETCC---------------------C
T ss_pred ccCCcCceEEEeCCCEEEEEEEECCCC---------------------ceEEecCcceeCCCCCCccccCCCCcccccCc
Confidence 568999999999999999999999997 8999999999999999999721 1389
Q ss_pred ccCCCCcceeeeEEEeCCCC-----Cc----eeeeecCCCChhhhhhcccceEEEEEEcCCCCC-CCCCCCCCCCceeEE
Q 008071 170 FKEKGPTWTKKTYHYHNMQQ-----PG----NLWYHDHAMGLTRINLLAGLVGAYIVRHHDVET-PLRLPSGDEFDRPLV 239 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~-----~G----t~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~-~~~lp~~~~~e~~lv 239 (579)
+|.||++| +|+|+++++ +| |||||||.+. ..|+++||+|+|||+++.... ...+|.. ++|++|+
T Consensus 122 ~I~PG~~~---tY~f~~~~~~gp~~~G~~c~T~wYHsH~~~--~~q~~~GL~G~lIV~~~~~~~~~~~~~~~-~~e~~l~ 195 (647)
T 1sdd_B 122 AIQPNKTY---TYVWHATTRSGPENPGSACRAWAYYSAVNP--EKDIHSGLIGPLLICRKGTLDKETNMPVD-MREFVLL 195 (647)
T ss_dssp CBCTTCCE---ECCEECCTTTSCCSSSCSEEEEEEECCSSH--HHHHTTTCEEEEEEECTTSSCTTSCCCSS-CCEEEEE
T ss_pred ccCCCCeE---EEEEECCcccCCCCCCCCceEEEEccCCCC--cccccccCccCEEEeeCCCcccccCCCCc-ceeEEEE
Confidence 99999999 999999865 57 9999999963 579999999999999765221 1223544 6899999
Q ss_pred EEeeeeecCCcEEecCCCCC--CCCCCCCCCCCCCcEEEECCccc--CeEEecC-cEEEEEEEecCCCe-eEEEEEcCCC
Q 008071 240 VFDRSFRTDGSIYMNSTGNN--PSIHPQWQPEYFGDAIIVNGKAW--PRMTVRR-RKYRFRIINASNAR-FYRFFFTNGL 313 (579)
Q Consensus 240 l~D~~~~~~g~~~~~~~g~~--~~~~~~~~~~~~gd~~~VNG~~~--P~~~v~~-~~~RlRllNa~~~~-~~~l~l~~g~ 313 (579)
|+|+. .++++++...+.. ...+. ..+..++.++|||+.+ |.+.+++ ++|||||+|+++.+ .+.||| |||
T Consensus 196 l~~~d--~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~iNG~~~~~p~l~v~~G~~vrlrliN~~~~~~~h~~hl-hG~ 270 (647)
T 1sdd_B 196 FMVFD--EKKSWYYDKKPTRSWRRASS--EVKNSHEFHAINGMIYNLPGLRMYEQEWVRLHLLNLGGSRDIHVVHF-HGQ 270 (647)
T ss_dssp EEEEE--GGGSSCCC-----------------CCCEEEEETTBSSCCCCCEEETTCEEEEEEEECCCTTCCEEEEE-TTC
T ss_pred EEeec--CccccccccCcccccccCCc--chhhcCceeccCCEecCCCCeEEcCCCEEEEEEEeCCCCCcceeEEE-cCc
Confidence 99532 2222221111100 00000 0123478999999986 8899987 99999999999875 899999 799
Q ss_pred eEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 314 RFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 314 ~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
.|++|+.|| ..++++.|+||||+||+|+++++ | .+.+...
T Consensus 271 ~f~vi~~d~------~~~d~v~l~pg~r~~v~~~~~~p-G-~w~~hch 310 (647)
T 1sdd_B 271 TLLENGTQQ------HQLGVWPLLPGSFKTLEMKASKP-G-WWLLDTE 310 (647)
T ss_dssp CEEECSSSC------EEESSEEECTTEEEEEEEECCSS-E-EEEEECC
T ss_pred EEEEecCCC------cccceEEECCCeEEEEEEEeccc-e-EeecccC
Confidence 999999986 47899999999999999999986 3 6766654
No 37
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=5.2e-35 Score=316.60 Aligned_cols=264 Identities=16% Similarity=0.192 Sum_probs=200.7
Q ss_pred eeEEEeEEEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008071 65 KKLKIGMFKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIP 144 (579)
Q Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~ 144 (579)
..+++.+.+....+..+. ...+|+|| |++|||+|++++||+++|+|.|.+... .+
T Consensus 164 ~~~~l~~~~~~~~~~~g~-~~~~~~~N-----G~~pgp~i~v~~G~~v~~rl~N~~~~~-------------------~~ 218 (447)
T 2dv6_A 164 VRIDLETVEVKGQLDDNT-TYTYWTFN-----GKVPGPFLRVRVGDTVELHLKNHKDSL-------------------MV 218 (447)
T ss_dssp EEEEEEEEEEEEEEETTE-EEEEEEET-----TBBSCCCEEEETTCEEEEEEEECTTCS-------------------SC
T ss_pred EEEEEEEEEEEEeccCCc-eeEEEEEC-----CccCCCeEEecCCCEEEEEEEeCCCCc-------------------ee
Confidence 456777666666665443 67899997 999999999999999999999998631 17
Q ss_pred eEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCC
Q 008071 145 TVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVET 224 (579)
Q Consensus 145 t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~ 224 (579)
++|||||+. .+||+|+ .++ |.||+++ +|.|+++ ++||||||||.. .+..|+.+||+|+|||+++.
T Consensus 219 ~~ih~Hg~~---~~DG~~~--~~~--i~pG~~~---~~~~~~~-~~G~~~yh~h~~-~~~~~~~~Gl~g~l~v~~~~--- 283 (447)
T 2dv6_A 219 HSVDFHGAT---GPGGAAA--FTQ--TDPGEET---VVTFKAL-IPGIYVYHCATP-SVPTHITNGMYGLLLVEPEG--- 283 (447)
T ss_dssp BCCEETTCC---SGGGGGG--GCC--BCTTCEE---EEEEECC-SCEEEEEECCSS-SHHHHHHTTCEEEEEEECTT---
T ss_pred EEEeecccc---CCCCCCc--cEE--eCCCCEE---EEEEECC-CCeEEEEEeCCC-ChHHHHhCCCEEEEEEeCCC---
Confidence 999999986 4689886 343 8999999 9999998 789999999984 45679999999999999543
Q ss_pred CCCCCCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC-----eEEecC-cEEEEEEEe
Q 008071 225 PLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP-----RMTVRR-RKYRFRIIN 298 (579)
Q Consensus 225 ~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P-----~~~v~~-~~~RlRllN 298 (579)
.+|. +++|++++++||....+-.. .|.. ........+..++.++|||+.++ .+++++ ++|||||+|
T Consensus 284 --~~P~-~d~~~~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~iNG~~~~~~~~~~~~v~~g~~vrlrliN 355 (447)
T 2dv6_A 284 --GLPQ-VDREFYVMQGEIYTVKSFGT----SGEQ-EMDYEKLINEKPEYFLFNGSVGSLTRSHPLYASVGETVRIFFGV 355 (447)
T ss_dssp --CSCC-CSEEEEEEEEEECBSSCTTC----CEEC-CBBHHHHHTTCCSEEEETTSTTCCCCCCCEEECTTCEEEEEEEE
T ss_pred --CCCC-CCeeEEEEecccccCCcccc----cccc-cCChHHhhccCCCEEEECCcccCCCCCcceEECCCCEEEEEEEe
Confidence 2454 47888899999864322100 0000 00000001234689999999986 588988 899999999
Q ss_pred cCCCeeEEEEEcCCCeEEEEecCCCccCccE-EecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCC
Q 008071 299 ASNARFYRFFFTNGLRFIHVAADSAYLGRPV-VTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANG 377 (579)
Q Consensus 299 a~~~~~~~l~l~~g~~f~via~DG~~l~~p~-~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~ 377 (579)
++..+.+.||| +||.|+||+.||++++.|. .++++.|+||||+||+|+++++ | .|.|........ ..+
T Consensus 356 ~~~~~~h~~hl-hGh~f~vv~~dG~~~~~p~~~~dtv~l~pg~r~~i~~~~~~p-G-~~~~hch~~~h~--------~~G 424 (447)
T 2dv6_A 356 GGPNFTSSFHV-IGEIFDHVYSLGSVVSPPLIGVQTVSVPPGGATIVDFKIDRA-G-RYILVDHALSRL--------EHG 424 (447)
T ss_dssp EESSCCEEEEE-ETCCEEEECGGGCSSSCCEEEESEEEECTTEEEEEEEECCSC-E-EEEEEESSGGGG--------GGT
T ss_pred CCCCceEeEEE-cCcEEEEEEcCCcccCCCcccccEEEECCCcEEEEEEECCCC-E-EEEEEecCcCcc--------ccC
Confidence 99888999999 6999999999999997777 6899999999999999999985 3 788776532111 122
Q ss_pred ccEEEEEecC
Q 008071 378 KVMKFIIKKN 387 (579)
Q Consensus 378 ~v~~~~v~~~ 387 (579)
.++.|.|.+.
T Consensus 425 m~~~~~v~~~ 434 (447)
T 2dv6_A 425 LVGFLNVDGP 434 (447)
T ss_dssp CCEEEEECSC
T ss_pred CEEEEEEeCC
Confidence 4566677654
No 38
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=99.97 E-value=5.8e-33 Score=315.50 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=165.5
Q ss_pred CCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC-CCC-----CCCcccccc
Q 008071 96 TATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE-SDG-----NANSWFTAG 169 (579)
Q Consensus 96 ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~-~DG-----~p~~~~t~~ 169 (579)
...+|||+||+++||+|+|+|+|+|+. +++|||||+++... +|| ++. ++||
T Consensus 446 ~~g~pGP~Ir~~~GD~v~v~~~N~l~~---------------------~~siHwHGl~~~~~~~DG~~~~G~~~--~~~~ 502 (742)
T 2r7e_A 446 ESGILGPLLYGEVGDTLLIIFKNQASR---------------------PYNIYPHGITDVRPLYSRRLPKGVKH--LKDF 502 (742)
T ss_dssp SSCSCCCCCCCBTTCEEECCEECCSSS---------------------CBCCEETTCSEECCTTCSCCSSSCSS--TTTS
T ss_pred ccCCCCCeEEEECCCEEEEEEEeCCCC---------------------CcCEEecccccCCcccccccCCCCcc--cccc
Confidence 347899999999999999999999998 89999999997554 565 444 7899
Q ss_pred ccCCCCcceeeeEEEeCCCCCc---------eeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEE
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPG---------NLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVV 240 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~G---------t~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl 240 (579)
+|.||++| +|+|++.+++| |||||||.+. ..|+++||+|+|||+++....+.+.+..+++|++|++
T Consensus 503 ~I~PG~t~---tY~f~~~~~agPg~~d~~~gT~wYHsH~~~--~~q~~~GL~G~lIV~~~~~~~~~~~~~~~d~E~~l~~ 577 (742)
T 2r7e_A 503 PILPGEIF---KYKWTVTVEDGPTKSDPRCLTRYYSSFVNM--ERDLASGLIGPLLICYKESVDQRGNQIMSDKRNVILF 577 (742)
T ss_dssp CCBSSCEE---CCEEECCSTTSCCSSSCSCCCCEEECCSSS--SSTGGGSCCEECCCBCCCSCCCCCCSSCCSCCCEEEE
T ss_pred cCCCCCeE---EEEEEeccccCCcccCCCceEEEEecCcch--hhhhhccceeeEEEcCccccccccCcCCCCceEEEEe
Confidence 99999999 99999986554 9999999975 3589999999999996542222333444589999999
Q ss_pred EeeeeecCCcEEecC----CCCCCCCCCCCCCCC--CCcEEEECCcccCe--EEecC-cEEEEEEEecCCC-eeEEEEEc
Q 008071 241 FDRSFRTDGSIYMNS----TGNNPSIHPQWQPEY--FGDAIIVNGKAWPR--MTVRR-RKYRFRIINASNA-RFYRFFFT 310 (579)
Q Consensus 241 ~D~~~~~~g~~~~~~----~g~~~~~~~~~~~~~--~gd~~~VNG~~~P~--~~v~~-~~~RlRllNa~~~-~~~~l~l~ 310 (579)
+++ +++.+++... ....+.....-.+.+ ....++|||+.+.. +.++. ++|||||+|++.. ..+.|||
T Consensus 578 ~~f--de~~~wy~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~ING~~~~~~~l~v~~Ge~vr~rliN~g~~~~~h~~Hl- 654 (742)
T 2r7e_A 578 SVF--DENRSWYLTENIQRFLPNPAGVQLEDPEFQASNIMHSINGYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFF- 654 (742)
T ss_dssp CBC--CGGGSSCSHHHHHHHSSSSSCSCCCCHHHHGGGCCBCTTTTCSSCCCCCCCSSCCCEEEEEECSSCCCCCCCEE-
T ss_pred ecc--ccccccccccchhhcccCchhcccccccccccCceeeecCcCCCCCcEEEeCCCEEEEEEEeCCCCcceEEEEE-
Confidence 874 4444432210 000010000000000 12357899997532 77877 9999999997754 5689999
Q ss_pred CCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecC
Q 008071 311 NGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILAND 361 (579)
Q Consensus 311 ~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~ 361 (579)
+||.|+++ +..+|++.|.||||++|+|.+++++ .|.+...
T Consensus 655 hGh~f~v~---------~~~~Dtv~l~Pg~~~~v~~~ad~pG--~w~~hcH 694 (742)
T 2r7e_A 655 SGYTFKHK---------MVYEDTLTLFPFSGETVFMSMENPG--LWILGCH 694 (742)
T ss_dssp SSSCCCCB---------SSSBCSSCCCCCSSEECCEECCCCC--CSCCEEC
T ss_pred cCcEEEEe---------ccceeEEEECCCcEEEEEEEcCCCe--EEEEEeC
Confidence 79999987 4578999999999999999998864 4555443
No 39
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.95 E-value=3.2e-27 Score=240.66 Aligned_cols=225 Identities=17% Similarity=0.207 Sum_probs=162.5
Q ss_pred CcEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 272 GDAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 272 gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
...+++||+. .|.|.++. +++++|+.|.... .+++|+ ||.. ....||.+. ++...|.|||+++..++++
T Consensus 54 ~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~-~~~iH~-HG~~--~~~~DG~p~-----~~~~~i~PG~~~~y~f~~~ 124 (288)
T 3gdc_A 54 FKGWSYNGRIPGPTLWAREGDALRIHFTNAGAH-PHTIHF-HGVH--RATMDGTPG-----IGAGSIAPGQSFTYEFDAT 124 (288)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEECSSS-CBCCEE-SSCC--CGGGSCCTT-----STTCSBCTTCEEEEEEECC
T ss_pred EEEEEECCccCCCcEEEeCCCEEEEEEEeCCCC-cccEEe-cccc--ccccCCCCC-----ccceeECCCCEEEEEEEcC
Confidence 3689999996 58999988 9999999999874 588999 7865 568899764 2445789999999999996
Q ss_pred CCCCcEEEEecCCCC---CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecCCC
Q 008071 350 ESKSDVAILANDAPY---PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSDID 426 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~---~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~~g 426 (579)
+++ +|+....... ....| -.-.+.|..... . +...++..+.+.+.....+
T Consensus 125 ~~G--t~~yH~H~~~~~~~~~~G--------l~G~liV~~~~~-----~------------~~~d~e~~l~~~d~~~~~g 177 (288)
T 3gdc_A 125 PFG--THLYHCHQSPLAPHIAKG--------LYGGFIVEPKEG-----R------------PPADDEMVMVMNGYNTDGG 177 (288)
T ss_dssp SCE--EEEEECCCSSHHHHHHTT--------CEEEEEEECSSC-----C------------CCCSEEEEEEEEEECCSST
T ss_pred CCc--cEEEEecCcchHHHHhCc--------CeEEEEEeCCcc-----C------------CCCcceEEEEEeeEecCCC
Confidence 653 7877765420 00111 122233432210 0 1122333344444322222
Q ss_pred -CcceEEEcCeecC-CCcccccCCCCeEEEEEEeCCCC--CceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccc
Q 008071 427 -EPTHLFINGKSYE-EPVTETPKAGTSEVWNVINLTED--NHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHI 502 (579)
Q Consensus 427 -~~~~~~iNg~~~~-~~~~~~~~~G~~~~w~l~N~~~~--~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~ 502 (579)
.+..|+|||+.|. .+..+.++.|++++|.|.|.+.. .|||||||+.|+|++.+
T Consensus 178 ~~~~~~~iNG~~~~~~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g----------------------- 234 (288)
T 3gdc_A 178 DDNEFYSVNGLPFHFMDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTG----------------------- 234 (288)
T ss_dssp TCCSEEEETTSTTHHHHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETT-----------------------
T ss_pred CCcceEEECcccccccCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCC-----------------------
Confidence 2457999999986 23456789999999999999854 59999999999998642
Q ss_pred cccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 503 SKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 503 ~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
+. ...+.|+||+.|+||+++.|+++|+ +|| |+||||+++|++.|||+.|+|.+
T Consensus 235 -----~~-----~~~~~~~Dtv~v~pg~~~~v~~~~~--------------~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 235 -----TM-----LTPSEYTDTISQVQGQRGILELRFP--------------YPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp -----CC-----SSCSEEESEEEEETTCEEEEEECCC--------------SCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred -----Cc-----cCCCceeeEEEeCCCceEEEEEECC--------------CCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 11 1224799999999999998877765 789 99999999999999999999974
No 40
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.93 E-value=2.6e-25 Score=231.64 Aligned_cols=228 Identities=13% Similarity=0.160 Sum_probs=160.5
Q ss_pred CcEEEECCc-ccCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEec---CCCccCccEEecEEEeCcceEEEEEE
Q 008071 272 GDAIIVNGK-AWPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAA---DSAYLGRPVVTNETLLAPSEIADVVI 346 (579)
Q Consensus 272 gd~~~VNG~-~~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~---DG~~l~~p~~~~~l~l~pgeR~dvlv 346 (579)
.+.+++||+ ..|.|.++. +++|+|++|.+... ++||. || +.+.+. ||.+. +....|+||||++..+
T Consensus 23 ~~~~~~NG~~pGP~I~v~~Gd~v~v~v~N~l~~~-~siH~-HG--~~~~~~~~~DGvp~-----vtq~~I~PG~~~~y~f 93 (339)
T 2zwn_A 23 YKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLP-HTIHW-HG--VHQKGTWRSDGVPG-----VTQQPIEAGDSYTYKF 93 (339)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEEESSSC-BCCEE-ET--CCCTTCGGGSCCBT-----TTBCCBCTTCEEEEEE
T ss_pred EEEEEECCccCCCeEEEECCCEEEEEEEECCCCC-ccEEe-CC--CCcCCCcccCCCCc-----cccCccCCCCeEEEEE
Confidence 368999999 489999988 99999999999754 66777 55 556664 99863 3456799999999999
Q ss_pred EcCCCCCcEEEEecCCCC--CCC-CCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec
Q 008071 347 DFSESKSDVAILANDAPY--PYP-SGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS 423 (579)
Q Consensus 347 ~~~~~~g~~~~l~~~~~~--~~~-~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~ 423 (579)
++++.+ +|+....... ... .| -.-.+.|..... ..++ ...+++..+.|.+...
T Consensus 94 ~~~~~G--t~wyH~H~~~~~q~~~~G--------l~G~liV~p~~~---~~~~-----------~~~d~e~~l~l~d~~~ 149 (339)
T 2zwn_A 94 KADRIG--TLWYHCHVNVNEHVGVRG--------MWGPLIVDPKQP---LPIE-----------KRVTKDVIMMMSTWES 149 (339)
T ss_dssp ECCSCE--EEEEECCSSHHHHTTTSC--------CEEEEEEECSSC---CTTG-----------GGCSEEEEEEEEEECG
T ss_pred ECCCCE--EEEEEecCCchhhhhcCC--------ceEeEEecCCCc---cccc-----------ccCCceEEEEeeheec
Confidence 998643 8888765321 011 11 111223332211 0010 0112233333332210
Q ss_pred ----------CCC-CcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhh
Q 008071 424 ----------DID-EPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMT 492 (579)
Q Consensus 424 ----------~~g-~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~ 492 (579)
..+ ....|+|||+.|.....+.++.|++++|.|+|.+...||||||||.|+|++.+
T Consensus 150 ~~~~~~~~~g~~~~~~~~~~ING~~~~~~~~~~v~~G~~vrlrliN~~~~~h~~hlhGh~f~vi~~D------------- 216 (339)
T 2zwn_A 150 AVADKYGEGGTPMNVADYFSVNAKSFPLTQPLRVKKGDVVKIRFFGAGGGIHAMHSHGHDMLVTHKD------------- 216 (339)
T ss_dssp GGTTCTTCCCSTTSCCCEEEETTBCTTSSCCEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEET-------------
T ss_pred ccccccCCCCCCccccceEEEccccCCCcccEEECCCCEEEEEEEeCCCceEEEEECCcEEEEEEeC-------------
Confidence 001 23468999999876556788999999999999988899999999999999873
Q ss_pred ccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccc-----
Q 008071 493 KYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDH----- 566 (579)
Q Consensus 493 ~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~H----- 566 (579)
|... .++.|+||+.|.||+++.|+++++ +|| |++|||+++|
T Consensus 217 ---------------G~~~----~~p~~~dtv~l~pg~r~~v~~~~~--------------~pG~w~~hch~~~H~~~~~ 263 (339)
T 2zwn_A 217 ---------------GLPL----DSPYYADTVLVSPGERYDVIIEAD--------------NPGRFIFHDHVDTHVTAGG 263 (339)
T ss_dssp ---------------TEEE----EEEEEESEEEECTTCEEEEEEECC--------------SCSEEEEEECCGGGSCBTT
T ss_pred ---------------Ceec----CCCcEEEEEEECCCCEEEEEEEeC--------------CCeeEEEEEechhhccccc
Confidence 3211 225689999999999988876664 788 9999999999
Q ss_pred -cccCccccEEEc
Q 008071 567 -EDNVMMRPLKLI 578 (579)
Q Consensus 567 -ed~GMm~~~~V~ 578 (579)
++.|||+.++|.
T Consensus 264 ~~~~gm~a~l~~~ 276 (339)
T 2zwn_A 264 KHPGGPITVIEYD 276 (339)
T ss_dssp BSSCSSEEEEEET
T ss_pred ccCCCcEEEEEEC
Confidence 889999999874
No 41
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.93 E-value=2.9e-25 Score=229.07 Aligned_cols=232 Identities=14% Similarity=0.175 Sum_probs=161.4
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEE-EEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFI-HVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~-via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..+++||+. .|.|.++. +++++|+.|... ....||+ ||.... ....||.+- +....|.|||+++..+++.
T Consensus 23 ~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~-~~~siH~-HG~~~~~~~~~DG~p~-----~t~~~i~PG~~~~y~f~~~ 95 (318)
T 3g5w_A 23 HTFAFNGQVPAPLIHVMEGDDVTVNVTNMTT-LPHTIHW-HGMLQRGTWQSDGVPH-----ATQHAIEPGDTFTYKFKAE 95 (318)
T ss_dssp EEEEETTBSSCCEEEEETTCEEEEEEEECSS-SCBCCEE-ETCCCTTCGGGSCCBT-----TTBCCBCTTCEEEEEEECC
T ss_pred EEEEECCccCCceEEEeCCCEEEEEEEeCCC-CceeEEe-cCcCCCCCcccCCCcc-----cccccCCCCCEEEEEEEcC
Confidence 588999986 68999988 999999999986 4578999 786543 236799764 2345789999999999997
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec----C-
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS----D- 424 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~----~- 424 (579)
+++ +++............ ..+-.-.+.|..... ..++ ...+++..+.+.+... .
T Consensus 96 ~~G--t~wYH~H~~~~~~~~-----~~Gl~G~lIV~~~~~---~~~~-----------~~~d~e~~l~l~dw~~~~~~~~ 154 (318)
T 3g5w_A 96 PAG--TMWYHCHVNVNEHVT-----MRGMWGPLIVEPKNP---LPIE-----------KTVTKDYILMLSDWVSSWANKP 154 (318)
T ss_dssp SCE--EEEEECCSSHHHHHH-----HSCCEEEEEEECSSC---CHHH-----------HTCCEEEEEEEEEECGGGTTCT
T ss_pred CCE--EEEEEccCChhhhhc-----cCCCEEEEEEcCCCc---cccc-----------ccccceeEEEEEeecccccccc
Confidence 653 777766542100000 011111233433211 0000 0112233333333211 0
Q ss_pred --C----CCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcc
Q 008071 425 --I----DEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAI 498 (579)
Q Consensus 425 --~----g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~ 498 (579)
. ..+..|+|||+.|.....+.++.|++++|.|+|.+...||||||||.|+|+++.
T Consensus 155 ~~~~~~~~~~d~~~ING~~~~~~~~l~v~~G~~vrlrliN~~~~~h~~hlhGh~f~vi~~d------------------- 215 (318)
T 3g5w_A 155 GEGGIPGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKD------------------- 215 (318)
T ss_dssp TCCCCTTCCCCEEEETTBCBTSSCCEEECTTCEEEEEEEECSSSCEEEEETTSCEEEEEET-------------------
T ss_pred ccCCCCCCcCcEEEEcCcCCCCCccEEeCCCCEEEEEEEeCCCceEEEEECCcEEEEEecC-------------------
Confidence 0 123469999999987666789999999999999988899999999999999883
Q ss_pred cccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccc------cCc
Q 008071 499 KCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHED------NVM 571 (579)
Q Consensus 499 ~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed------~GM 571 (579)
|.+ ..++.++||+.|.||+++.|+++++ ||| |+||||+++|++ .||
T Consensus 216 ---------G~~----~~~p~~~dtv~l~pger~~v~~~a~--------------~pG~w~~hCH~~~H~~~g~~~~~Gm 268 (318)
T 3g5w_A 216 ---------GFP----LDKPIKGDTVLIGPGERYDVILNMD--------------NPGLWMIHDHVDTHTTNGDKPDGGI 268 (318)
T ss_dssp ---------TEE----EEEEEEESEEEECTTCEEEEEEECC--------------SCSEEEEEESSGGGSCBTTBSSCBS
T ss_pred ---------Ccc----cCCCccccEEEECCCCEEEEEEECC--------------CCeeEEEEeccHHHhhccCcCCCCC
Confidence 321 1245699999999999998877665 789 999999999998 578
Q ss_pred cccEEEc
Q 008071 572 MRPLKLI 578 (579)
Q Consensus 572 m~~~~V~ 578 (579)
|+.++|-
T Consensus 269 ~~~i~~~ 275 (318)
T 3g5w_A 269 MTTIEYE 275 (318)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8888873
No 42
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.81 E-value=4.2e-19 Score=184.99 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=149.8
Q ss_pred CcEEEECCcc-cCeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEc
Q 008071 272 GDAIIVNGKA-WPRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDF 348 (579)
Q Consensus 272 gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~ 348 (579)
.+.+++||+. .|.|.++. +++|+|+.|...+ ..+.+++ ++... +.||..+ . .|.|||+++..+++
T Consensus 59 ~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~hg~~~-~~~~~---~~~~~~~----~----~i~PG~~~~y~~~~ 126 (340)
T 2bw4_A 59 IHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDF-HAATG---ALGGGAL----T----QVNPGEETTLRFKA 126 (340)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEECTTCCSCBCCEE-TTSCS---GGGGGGG----C----CBCTTEEEEEEEEC
T ss_pred EEEEEECCCCCCCcEEEcCCCEEEEEEEeCCCCCccCccee-CCcCC---CCCCccc----e----EeCCCCEEEEEEEC
Confidence 4689999994 79999988 8999999999743 5677888 56431 2344332 1 39999999999999
Q ss_pred CCCCCcEEEEecCCCC----CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee--
Q 008071 349 SESKSDVAILANDAPY----PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT-- 422 (579)
Q Consensus 349 ~~~~g~~~~l~~~~~~----~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~-- 422 (579)
++. | +|+....... ....| -.-.+.|....... ...+. + ...+++..+.+.+..
T Consensus 127 ~~~-G-t~wyH~h~~~~~~~~~~~G--------l~G~~iV~~~~~~~-~~~~~---p------~~~d~e~~l~l~D~~~~ 186 (340)
T 2bw4_A 127 TKP-G-VFVYHCAPEGMVPWHVTSG--------MNGAIMVLPRDGLK-DEKGQ---P------LTYDKIYYVGEQDFYVP 186 (340)
T ss_dssp CSC-E-EEEEECCCTTCHHHHHHTT--------CEEEEEEECTBCEE-CTTSC---E------ECCSEEEEEEEEEECCC
T ss_pred CCC-e-EEEEEcCCCCchhhHHhCc--------CEEEEEEccCcCcc-cccCC---C------cCcceeEEEeeeeeeec
Confidence 874 3 8887765420 01111 11123333221100 00000 0 001111111111110
Q ss_pred -cC----------------------CCCcceEEEcCeecCC--CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEe
Q 008071 423 -SD----------------------IDEPTHLFINGKSYEE--PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLD 477 (579)
Q Consensus 423 -~~----------------------~g~~~~~~iNg~~~~~--~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~ 477 (579)
+. ...+..|+|||+.|.. ...+.++.|++++|.+.|.+...|++|+|+|.|+|+.
T Consensus 187 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~l~v~~G~r~Rl~n~~~~~~~~~~~i~gh~~~Vi~ 266 (340)
T 2bw4_A 187 KDEAGNYKKYETPGEAYEDAVKAMRTLTPTHIVFNGAVGALTGDHALTAAVGERVLVVHSQANRDTRPHLIGGHGDYVWA 266 (340)
T ss_dssp BCTTSCBCCCCSHHHHHHHHHHHHHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEET
T ss_pred cccCCcccccccccccccchhhHhhcCCCCEEEECCccCCccCCCceEcCCCCEEEEEECCCCCccceEEecCcceEEeC
Confidence 00 0123468999999864 2567889999999988888778999999999999985
Q ss_pred EechhhhHHhhhhhhccCCcccccccccccCcccccccccC-cccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc
Q 008071 478 QRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEK-GWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG 556 (579)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~-~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg 556 (579)
. |.... .+ .|+||+.+.||+.+.|+|+|+ +||
T Consensus 267 d-----------------------------G~~~~----~p~~~~dtv~l~pGer~~v~v~~~--------------~pG 299 (340)
T 2bw4_A 267 T-----------------------------GKFRN----PPDLDQETWLIPGGTAGAAFYTFR--------------QPG 299 (340)
T ss_dssp T-----------------------------CCTTS----CCEEEESCCCBCTTEEEEEEEECC--------------SCE
T ss_pred C-----------------------------CcccC----CccccceEEEeCCCceEEEEEECC--------------CCe
Confidence 2 21111 11 378999999999999988876 678
Q ss_pred -eEEeeccc-cccccCccccEEEc
Q 008071 557 -YVYHCHVL-DHEDNVMMRPLKLI 578 (579)
Q Consensus 557 -w~~HCHil-~Hed~GMm~~~~V~ 578 (579)
|+||||++ +|++.|||+.|+|.
T Consensus 300 ~y~~~~h~~~~h~~~Gm~~~~~V~ 323 (340)
T 2bw4_A 300 VYAYVNHNLIEAFELGAAGHFKVT 323 (340)
T ss_dssp EEEEEESSHHHHHTTSCEEEEEEE
T ss_pred eeEEEcCchHHHHhCCCEEEEEEC
Confidence 99999999 69999999999985
No 43
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.79 E-value=4.5e-19 Score=199.96 Aligned_cols=224 Identities=17% Similarity=0.229 Sum_probs=142.0
Q ss_pred CcccCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccCc--c-EEecEEEeCcceEEEEEEEcCCCCC-
Q 008071 279 GKAWPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLGR--P-VVTNETLLAPSEIADVVIDFSESKS- 353 (579)
Q Consensus 279 G~~~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~~--p-~~~~~l~l~pgeR~dvlv~~~~~~g- 353 (579)
+-..|.|.++. +++++||.|... ..+.||. ||.... ...||.+... | ..+....|.|||+++..+++.+..|
T Consensus 65 ~~pGP~I~~~~Gd~v~v~~~N~l~-~~~siH~-HGl~~~-~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp 141 (647)
T 1sdd_B 65 GILGPVIRAEVDDVIQVRFKNLAS-RPYSLHA-HGLSYE-KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGP 141 (647)
T ss_dssp TTSCCCEEEETTCEEEEEECCCSS-SCBCCEE-ETCC----------------------CCBCTTCCEECCEECCTTTSC
T ss_pred CCcCceEEEeCCCEEEEEEEECCC-CceEEec-CcceeC-CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCC
Confidence 34569999988 999999999986 4578999 786654 5789976421 1 2233567999999999999987532
Q ss_pred ---c----EEEEecCCCC--CCCCCCCCCCCCCccEEEEEecCCCCCC-CCCCCCCCCCCCCCCCCCccceEEEEEeee-
Q 008071 354 ---D----VAILANDAPY--PYPSGDPVNDANGKVMKFIIKKNHELDT-WRVPEKLIKYPSPNPSSASRTRYIAMYEYT- 422 (579)
Q Consensus 354 ---~----~~~l~~~~~~--~~~~g~~~~~~~~~v~~~~v~~~~~~~~-~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~- 422 (579)
+ +|+-.+.... .+..| -.-.+.|........ ...|. ..++..+.|....
T Consensus 142 ~~~G~~c~T~wYHsH~~~~~q~~~G--------L~G~lIV~~~~~~~~~~~~~~------------~~~e~~l~l~~~d~ 201 (647)
T 1sdd_B 142 ENPGSACRAWAYYSAVNPEKDIHSG--------LIGPLLICRKGTLDKETNMPV------------DMREFVLLFMVFDE 201 (647)
T ss_dssp CSSSCSEEEEEEECCSSHHHHHTTT--------CEEEEEEECTTSSCTTSCCCS------------SCCEEEEEEEEEEG
T ss_pred CCCCCCceEEEEccCCCCccccccc--------CccCEEEeeCCCcccccCCCC------------cceeEEEEEEeecC
Confidence 4 7877765421 11112 111233333211100 00010 0112222221100
Q ss_pred -----------------c-C-CCCcceEEEcCeecCCCcccccCCCCeEEEEEEeCCC--CCceeeeeeccEEEEeEech
Q 008071 423 -----------------S-D-IDEPTHLFINGKSYEEPVTETPKAGTSEVWNVINLTE--DNHPLHIHLGLFVVLDQREL 481 (579)
Q Consensus 423 -----------------~-~-~g~~~~~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~--~~HP~HlHg~~Fqvl~~~~~ 481 (579)
. . ......++|||+.| +...+.++.|++++|.|+|.+. +.||||+|||.|+|++..
T Consensus 202 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~-~~p~l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi~~d-- 278 (647)
T 1sdd_B 202 KKSWYYDKKPTRSWRRASSEVKNSHEFHAINGMIY-NLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQ-- 278 (647)
T ss_dssp GGSSCCC---------------CCCEEEEETTBSS-CCCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSS--
T ss_pred ccccccccCcccccccCCcchhhcCceeccCCEec-CCCCeEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEecCC--
Confidence 0 0 01235689999998 3345678999999999999875 489999999999998641
Q ss_pred hhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEe
Q 008071 482 VKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYH 560 (579)
Q Consensus 482 ~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~H 560 (579)
+.++||+.|.||+++.|+|+++ +|| |+||
T Consensus 279 ------------------------------------~~~~d~v~l~pg~r~~v~~~~~--------------~pG~w~~h 308 (647)
T 1sdd_B 279 ------------------------------------QHQLGVWPLLPGSFKTLEMKAS--------------KPGWWLLD 308 (647)
T ss_dssp ------------------------------------CEEESSEEECTTEEEEEEEECC--------------SSEEEEEE
T ss_pred ------------------------------------CcccceEEECCCeEEEEEEEec--------------cceEeecc
Confidence 2489999999999988877665 678 9999
Q ss_pred eccccccccCccccEEEc
Q 008071 561 CHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 561 CHil~Hed~GMm~~~~V~ 578 (579)
||+++|++.|||..|.|.
T Consensus 309 ch~~~h~~~Gm~~~~~V~ 326 (647)
T 1sdd_B 309 TEVGEIQRAGMQTPFLIV 326 (647)
T ss_dssp CCCHHHHTTTCEEEEEEE
T ss_pred cCcccccccccccceeee
Confidence 999999999999999984
No 44
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.78 E-value=2.5e-18 Score=177.98 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=153.4
Q ss_pred cEEEECCc-ccCeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGK-AWPRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~-~~P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..+++||+ ..|.|.++. +++|+|+.|.... ..+++|+ ||. .+.||... ...|.|||++++.++++
T Consensus 59 ~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~-HG~----~~~dG~~~-------~~~i~PG~~~~y~f~~~ 126 (327)
T 1kbv_A 59 RYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDF-HAA----TGQGGGAA-------ATFTAPGRTSTFSFKAL 126 (327)
T ss_dssp EEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEE-TTC----CSGGGGTT-------TTCBCTTEEEEEEEECC
T ss_pred EEEEECCccCCCeEEEeCCCEEEEEEEECCCCCCceeeEe-Ccc----ccCCCCCc-------ceeecCCCEEEEEEECC
Confidence 57999998 568999988 9999999999863 5688999 785 36788753 12489999999999998
Q ss_pred CCCCcEEEEecCCCC---CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec---
Q 008071 350 ESKSDVAILANDAPY---PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS--- 423 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~---~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~--- 423 (579)
+++ +|+....... ....| -.-.+.|.... .+|. .+++..+.+.+...
T Consensus 127 ~~G--t~wyH~h~~~~~~~~~~G--------l~G~~iV~~~~-----~~p~------------~d~e~~l~~~d~~~~~~ 179 (327)
T 1kbv_A 127 QPG--LYIYHCAVAPVGMHIANG--------MYGLILVEPKE-----GLPK------------VDKEFYIVQGDFYTKGK 179 (327)
T ss_dssp SCE--EEEEECCCSSHHHHHHTT--------CEEEEEEECTT-----CCCC------------CSEEEEEEEEEECBSSC
T ss_pred CCe--EEEEEeCCCChhhhhhcc--------eEEEEEEecCC-----CCCC------------CceEEEEEeeeeeccCc
Confidence 753 7887764310 00011 11123333221 1111 11111111111100
Q ss_pred --------------CCCCcceEEEcCeecCC--CcccccCCCCeEEEEEEeCCC-CCceeeeeeccEEEEeEechhhhHH
Q 008071 424 --------------DIDEPTHLFINGKSYEE--PVTETPKAGTSEVWNVINLTE-DNHPLHIHLGLFVVLDQRELVKLEE 486 (579)
Q Consensus 424 --------------~~g~~~~~~iNg~~~~~--~~~~~~~~G~~~~w~l~N~~~-~~HP~HlHg~~Fqvl~~~~~~~~~~ 486 (579)
....+..++|||+.+.. ...+.++.|++++|.|.|.+. ..|+||||||.|+|++..
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi~~D------- 252 (327)
T 1kbv_A 180 KGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVE------- 252 (327)
T ss_dssp TTCCEEECBCHHHHHHTCCSEEEETTSTTTTSGGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEEEGG-------
T ss_pred cccccccccChhHhccCCCceEEEcCcccCCCCceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEEEcC-------
Confidence 00123568999998863 234678999999999999874 589999999999999873
Q ss_pred hhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecccc
Q 008071 487 FKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLD 565 (579)
Q Consensus 487 ~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~ 565 (579)
|... ++.++|++.|.||+.+.|+++|+ +|| |++|||+++
T Consensus 253 ---------------------G~~~-----~p~~~d~l~l~pGer~dv~v~~~--------------~pG~y~l~~h~~~ 292 (327)
T 1kbv_A 253 ---------------------GGKL-----INENVQSTIVPAGGSAIVEFKVD--------------IPGNYTLVDHSIF 292 (327)
T ss_dssp ---------------------GSSC-----EECSBSEEEECTTEEEEEEEEEC--------------SCEEEEEEESSTH
T ss_pred ---------------------CCcC-----CCCceeEEEECCCCEEEEEEEeC--------------CCeEEEEEecccc
Confidence 3211 24689999999999999988886 678 999999999
Q ss_pred cc-ccCccccEEEc
Q 008071 566 HE-DNVMMRPLKLI 578 (579)
Q Consensus 566 He-d~GMm~~~~V~ 578 (579)
|. ..||++.++|-
T Consensus 293 ~~~~~g~~a~l~~~ 306 (327)
T 1kbv_A 293 RAFNKGALGQLKVE 306 (327)
T ss_dssp HHHHSSCEEEEEEE
T ss_pred ccccCCcEEEEEEC
Confidence 95 88999999874
No 45
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.76 E-value=1.4e-17 Score=172.91 Aligned_cols=229 Identities=17% Similarity=0.153 Sum_probs=142.5
Q ss_pred CcEEEECCcc-cCeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEc
Q 008071 272 GDAIIVNGKA-WPRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDF 348 (579)
Q Consensus 272 gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~ 348 (579)
...+++||+. .|.|.++. +++|+|+.|.+.+ ..+.+++ ++.. +.||+. +.. .|.||++++..+++
T Consensus 52 ~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~-~~~~----~~~~~~---~~~----~i~PG~~~~y~f~~ 119 (333)
T 1mzy_A 52 LQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDF-HAAT----GALGGG---GLT----LINPGEKVVLRFKA 119 (333)
T ss_dssp EEEEEETTBSSCCEEEEETTCEEEEEEEECTTCCSCBCCEE-TTSC----SGGGGG---GGC----CBCTTEEEEEEEEC
T ss_pred EEEEEECCccCCCcEEecCCCEEEEEEEECCCCccccccee-cCCC----CCCCCC---cee----EeCCCCEEEEEEEC
Confidence 3688999996 79999988 9999999999643 3455555 3421 233321 111 39999999999999
Q ss_pred CCCCCcEEEEecCCCC-----CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeec
Q 008071 349 SESKSDVAILANDAPY-----PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTS 423 (579)
Q Consensus 349 ~~~~g~~~~l~~~~~~-----~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~ 423 (579)
.+++ +|+....... ....| -.-.+.|..... ++..+ . .+...+++..+.+.+...
T Consensus 120 ~~~G--t~~yH~h~~~~~~~~~~~~G--------l~G~~iV~~~~~-----~~~~~---~--~p~~~d~e~~l~l~D~~~ 179 (333)
T 1mzy_A 120 TRAG--AFVYHCAPGGPMIPWHVVSG--------MAGCIMVLPRDG-----LKDHE---G--KPVRYDTVYYIGESDHYI 179 (333)
T ss_dssp CSCE--EEEEECCCSTTHHHHHHHTT--------CEEEEEEECTTC-----CBCTT---S--CBCCCSEEEEEEEEEECC
T ss_pred CCCE--EEEEeecCCcccchhhhhCC--------CEEEEEEccCcC-----ccccc---c--CCCccchheeeeeeeecc
Confidence 8753 7887765420 11111 111233432211 11000 0 000111111121111100
Q ss_pred -------------------------CCCCcceEEEcCeecCC--CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEE
Q 008071 424 -------------------------DIDEPTHLFINGKSYEE--PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVL 476 (579)
Q Consensus 424 -------------------------~~g~~~~~~iNg~~~~~--~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl 476 (579)
....+..|+|||+.+.. ...+.++.|++++|.+.|.+...|++++|+|.|+|+
T Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~~~~~l~v~~Ger~Rl~n~~~~~~~~~h~i~~h~~~Vi 259 (333)
T 1mzy_A 180 PKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVW 259 (333)
T ss_dssp CBCTTSCBCCCSSHHHHHHHHHHHHTTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEE
T ss_pred CccccccccccccccccccchhHHhhccCCcEEEECCcccccCCCcceEecCCCEEEEEECCCCCccccEEECCCCeEEE
Confidence 01124568999998643 345778999888877777655555656778888888
Q ss_pred eEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc
Q 008071 477 DQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG 556 (579)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg 556 (579)
+. |...+++ ..|+||+.|.||+.+.|++.|+ +||
T Consensus 260 ~d-----------------------------G~~~~~p---~~~~dtv~l~pGer~~v~v~a~--------------~pG 293 (333)
T 1mzy_A 260 ET-----------------------------GKFHNAP---ERDLETWFIRGGTAGAALYKFL--------------QPG 293 (333)
T ss_dssp TT-----------------------------CCTTSCC---EEEESBCCBCTTEEEEEEEECC--------------SCE
T ss_pred eC-----------------------------CcccCCC---ccCcceEEECCCceEEEEEEcC--------------CCE
Confidence 62 2111111 1379999999999999988876 678
Q ss_pred -eEEeecccccc-ccCccccEEEc
Q 008071 557 -YVYHCHVLDHE-DNVMMRPLKLI 578 (579)
Q Consensus 557 -w~~HCHil~He-d~GMm~~~~V~ 578 (579)
|+||||+++|+ +.|||+.|+|.
T Consensus 294 ~y~~~ch~~~h~~~~Gm~~~~~v~ 317 (333)
T 1mzy_A 294 VYAYVNHNLIEAVHKGATAHVLVE 317 (333)
T ss_dssp EEEEEESSHHHHHTTCCEEEEEEE
T ss_pred EEEEecChhhhHhhCCCEEEEEEc
Confidence 99999999997 99999999985
No 46
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.74 E-value=4.1e-17 Score=175.95 Aligned_cols=220 Identities=12% Similarity=0.110 Sum_probs=154.2
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..+++||+. .|.|.++. ++++||+.|.... ..+++|+ ||.. ..||... ...|.||+++++.++++
T Consensus 49 ~~~~~ng~~pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~-HG~~----~~dG~~~-------~~~i~pg~~~~y~f~~~ 116 (442)
T 2zoo_A 49 VFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDL-HAVT----GPGGGAE-------SSFTAPGHTSTFNFKAL 116 (442)
T ss_dssp EEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEE-TTCC----SGGGGGG-------GCCBCTTCEEEEEEECC
T ss_pred EEEEECCcCCCCcEEEeCCCEEEEEEEECCCCCCCCCEEe-cCCc----CCCCCCc-------cEEECCCCEEEEEEEcC
Confidence 578999997 79999987 9999999999753 5788999 8854 5788653 22589999999999998
Q ss_pred CCCCcEEEEecCCC---CCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee----
Q 008071 350 ESKSDVAILANDAP---YPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT---- 422 (579)
Q Consensus 350 ~~~g~~~~l~~~~~---~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~---- 422 (579)
+++ +|+...... .....| -...+.|..... +|. .+++..+.+.+..
T Consensus 117 ~~G--t~~yH~H~~~~~~~~~~G--------l~G~~iv~~~~~-----~~~------------~d~e~~l~l~d~~~~~~ 169 (442)
T 2zoo_A 117 NPG--LYIYHCATAPVGMHIANG--------MYGLILVEPKEG-----LAP------------VDREYYLVQGDFYTKGE 169 (442)
T ss_dssp SCE--EEEEECCCSSHHHHHHTT--------CEEEEEEECTTC-----CCC------------CSEEEEEEEEEECBSSC
T ss_pred CCe--EEEEecCCCChHHHHhCc--------cEEEEEEeCCCC-----CCC------------CCceEEEEeeeeeccCc
Confidence 753 788876421 000111 122334443211 110 0111111111100
Q ss_pred ------------c-CCCCcceEEEcCeecCCC--cccccCCCCeEEEEEEeCCC-CCceeeeeeccEEEEeEechhhhHH
Q 008071 423 ------------S-DIDEPTHLFINGKSYEEP--VTETPKAGTSEVWNVINLTE-DNHPLHIHLGLFVVLDQRELVKLEE 486 (579)
Q Consensus 423 ------------~-~~g~~~~~~iNg~~~~~~--~~~~~~~G~~~~w~l~N~~~-~~HP~HlHg~~Fqvl~~~~~~~~~~ 486 (579)
. ....+..++|||+.+... ..+.++.|++++|.|.|.+. ..|+||+||+.|+|++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi~~D------- 242 (442)
T 2zoo_A 170 FGEAGLQPFDMAKAIDEDADYVVFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVE------- 242 (442)
T ss_dssp TTCCEEECBCHHHHHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGG-------
T ss_pred ccccccccCChhHhccCCCCEEEECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEEecC-------
Confidence 0 012235689999988642 35678899999999999764 589999999999999873
Q ss_pred hhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecccc
Q 008071 487 FKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLD 565 (579)
Q Consensus 487 ~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~ 565 (579)
|... ++.+.|++.|.||+.+.|+++|+ +|| |++|||.+.
T Consensus 243 ---------------------G~~~-----~p~~~~~~~l~pg~r~~v~v~~~--------------~~G~y~~~~~~~~ 282 (442)
T 2zoo_A 243 ---------------------GGSL-----KNHNVQTTLIPAGGAAIVEFKVE--------------VPGTFILVDHSIF 282 (442)
T ss_dssp ---------------------GSSC-----EECSBSEEEECTTEEEEEEEECC--------------SCEEEEEEESSTH
T ss_pred ---------------------CccC-----CCccceEEEECCCeeEEEEEEcC--------------CCCeEEEEecccc
Confidence 3211 24689999999999999988876 567 999999999
Q ss_pred c-cccCccccEEEc
Q 008071 566 H-EDNVMMRPLKLI 578 (579)
Q Consensus 566 H-ed~GMm~~~~V~ 578 (579)
| ++.|||..|+|.
T Consensus 283 ~~~~~g~~a~l~v~ 296 (442)
T 2zoo_A 283 RAFNKGALAMLKVE 296 (442)
T ss_dssp HHHTTSCEEEEEEE
T ss_pred cccccCceEEEEec
Confidence 9 599999999884
No 47
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.62 E-value=7.6e-15 Score=152.50 Aligned_cols=228 Identities=19% Similarity=0.180 Sum_probs=145.9
Q ss_pred cEEEECCc-ccCeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGK-AWPRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~-~~P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..+++||+ ..|.|.++. +++++|+.|...+ ..+.+++ ||+. ..||+.. .. .|.|||+++..++++
T Consensus 54 ~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~h~~~~-h~~~----~~~~~~~---~~----~i~pG~~~~y~f~~~ 121 (336)
T 1oe1_A 54 QAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDF-HGAT----GALGGAK---LT----NVNPGEQATLRFKAD 121 (336)
T ss_dssp EEEEETTBSSCCCEEEETTCEEEEEEEECTTCCSCBCCEE-TTSC----SGGGGGG---GC----CBCTTEEEEEEEECC
T ss_pred EEEEECCccCCCeEEEcCCCEEEEEEEcCCCCCccccceE-CCCC----CCCCCcc---eE----EeCCCCEEEEEEECC
Confidence 58899998 568999988 9999999998753 5678888 6754 2344321 11 399999999999998
Q ss_pred CCCCcEEEEecCCCC----CCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeee---
Q 008071 350 ESKSDVAILANDAPY----PYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYT--- 422 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~----~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~--- 422 (579)
+++ +|+....... ....| -.-.+.|....... ...+. +...+++..+.+.+..
T Consensus 122 ~~G--t~~yH~h~~~~~~~~~~~G--------l~G~liV~~~~~~~-~~~~~---------~~~~D~e~~l~~~D~~~~~ 181 (336)
T 1oe1_A 122 RSG--TFVYHCAPEGMVPWHVVSG--------MSGTLMVLPRDGLK-DPQGK---------PLHYDRAYTIGEFDLYIPK 181 (336)
T ss_dssp SCE--EEEEECCCTTCHHHHHHTT--------CEEEEEEECTTCCB-CTTSC---------BCCCSEEEEEEEEEECCCB
T ss_pred CCe--EEEEecCCCCchhHHHhCC--------CeEEEEEecCcCCc-ccccC---------cccCCceeEeeeeeeeecc
Confidence 743 8887765420 00011 11123343321100 00000 0011111112221110
Q ss_pred cC----------------------CCCcceEEEcCeecCC--CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeE
Q 008071 423 SD----------------------IDEPTHLFINGKSYEE--PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQ 478 (579)
Q Consensus 423 ~~----------------------~g~~~~~~iNg~~~~~--~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~ 478 (579)
+. ...+..++|||+.+.. ...+.++.|++++|...+.+...+++++|||.|+|+..
T Consensus 182 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~l~v~~GervRlin~~~~~~~~~~~i~gh~~~Vi~D 261 (336)
T 1oe1_A 182 GPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWET 261 (336)
T ss_dssp CTTSSBCCCSSTGGGHHHHHHHHHTTCCSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEEETT
T ss_pred ccCCceeecccccccccchhhHhhcCCCCEEEECCeeccCCCCcceEcCCCCEEEEEecCCCCccceEEECCcCceEeCC
Confidence 00 0123468999998753 24567899999888666665566777789999999852
Q ss_pred echhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-e
Q 008071 479 RELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-Y 557 (579)
Q Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w 557 (579)
|....++ ..++||+.+.||+.+.++|.|+ +|| |
T Consensus 262 -----------------------------G~~~~p~---~~~~dtv~i~pGer~dvlv~~~--------------~pG~y 295 (336)
T 1oe1_A 262 -----------------------------GKFANPP---QRDLETWFIRGGSAGAALYTFK--------------QPGVY 295 (336)
T ss_dssp -----------------------------CCTTSCC---EEEESBCCBCTTEEEEEEEECC--------------SCEEE
T ss_pred -----------------------------CcCcCCc---cccceEEEECCCCcEEEEEEcC--------------CCceE
Confidence 2111111 1368999999999999988886 578 9
Q ss_pred EEeecccccc-ccCccccEEEc
Q 008071 558 VYHCHVLDHE-DNVMMRPLKLI 578 (579)
Q Consensus 558 ~~HCHil~He-d~GMm~~~~V~ 578 (579)
++|||.+.|. +.|||+.|+|.
T Consensus 296 ~~~~h~~~~~~~~G~~~~~~V~ 317 (336)
T 1oe1_A 296 AYLNHNLIEAFELGAAGHIKVE 317 (336)
T ss_dssp EEEESSHHHHHTTSCEEEEEEE
T ss_pred EEEechhhccccCCCeEEEEEC
Confidence 9999999986 99999999985
No 48
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.51 E-value=8.7e-15 Score=125.52 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC----CCCCCCccccccccC
Q 008071 97 ATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE----SDGNANSWFTAGFKE 172 (579)
Q Consensus 97 g~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~----~DG~p~~~~t~~~i~ 172 (579)
-++++|+|++++||+|+ |+|.... ++++||||...+.. +||.+ ..+..+.
T Consensus 14 ~~f~p~~i~v~~Gd~V~--~~N~~~~---------------------~H~v~~~~~~~~~~~g~~~~~~~---~~~~~i~ 67 (105)
T 3cvb_A 14 FQFEPANVTVHPGDTVK--WVNNKLP---------------------PHNILFDDKQVPGASKELADKLS---HSQLMFS 67 (105)
T ss_dssp SCEESSEEEECTTEEEE--EEECSSC---------------------CEEEEECTTSSGGGCHHHHHHHC---EEEEECS
T ss_pred cEEeCCEEEEcCCCEEE--EEECCCC---------------------CCeEEEeCCCCCccccccccccc---ccccccC
Confidence 46779999999999975 6798765 79999999876541 22221 3445689
Q ss_pred CCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 173 KGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 173 PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
||+++ +|.|+++.++|+||||||.| ..+||.|.|+|+|
T Consensus 68 pG~~~---~~~f~~~~~~G~y~y~C~~H------~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 68 PGESY---EITFSSDFPAGTYTYYCAPH------RGAGMVGKITVEG 105 (105)
T ss_dssp TTCEE---EEEECTTSCSEEEEEECTTT------GGGTCEEEEEECC
T ss_pred CCCeE---EEEEecCCCCeeEEEEeCCc------hhcCCEEEEEEcC
Confidence 99999 99999844899999999954 4689999999974
No 49
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.33 E-value=3.6e-12 Score=128.60 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCCC--CccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCC------ccc
Q 008071 95 HTATV--PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNAN------SWF 166 (579)
Q Consensus 95 ~ng~~--PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~------~~~ 166 (579)
+||+. ++|+|++++||+|+++|.|.... .+++|+||....-..+|... .+.
T Consensus 159 iNG~~~~~~p~i~v~~G~~vri~l~N~~~~---------------------~Hp~HlHG~~f~v~~~G~~~~p~~~~~~~ 217 (276)
T 3kw8_A 159 INNRKPHTGPDFEATVGDRVEIVMITHGEY---------------------YHTFHMHGHRWADNRTGILTGPDDPSRVI 217 (276)
T ss_dssp ETTCCTTCCCCEEEETTCEEEEEEEEESSC---------------------CEEEEETTCCEESSSSSSCCSTTCCCCEE
T ss_pred cceecccCCCCEEEecCCEEEEEEecCCCc---------------------ceeEEEccceeEEeccCccCCCcccccCC
Confidence 35877 89999999999999999998775 79999999765444455311 123
Q ss_pred cccccCCCCcceeeeEEEeCCC--CCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 167 TAGFKEKGPTWTKKTYHYHNMQ--QPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 167 t~~~i~PG~~~~~~~y~~~~~~--~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
....|.||+++ +|.|.+++ .+|+||||||.. .|..+||+|.|+|++++
T Consensus 218 Dtv~v~pg~~~---~~~~~~~~~~npG~w~~HCH~~----~H~~~GM~g~~~V~~~~ 267 (276)
T 3kw8_A 218 DNKITGPADSF---GFQIIAGEGVGAGAWMYHCHVQ----SHSDMGMVGLFLVKKPD 267 (276)
T ss_dssp SEEEECTTCEE---EEEEETTTTTCSEEEEEEECSH----HHHHTTCEEEEEEECTT
T ss_pred ccEEeCCCceE---EEEEEeccCCCCCeEEEECCCc----hHhhCCCeEEEEEeCCC
Confidence 33458999999 99999975 699999999984 68899999999999665
No 50
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.28 E-value=7.2e-11 Score=126.86 Aligned_cols=213 Identities=11% Similarity=0.091 Sum_probs=138.1
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCC-cc--ccccc
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNAN-SW--FTAGF 170 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~-~~--~t~~~ 170 (579)
+||+. .|+|+|++| ++++|+.|.-... ...+|++|....- ..||.+- .. +..-.
T Consensus 182 iNG~~-~p~l~v~~g-~~RlRliN~~~~~--------------------~~~~~i~gh~~~vi~~DG~~~~~p~~~~~l~ 239 (439)
T 2xu9_A 182 VNGAL-RPTLVAQKA-TLRLRLLNASNAR--------------------YYRLALQDHPLYLIAADGGFLEEPLEVSELL 239 (439)
T ss_dssp ETTEE-SCEEECSSS-EEEEEEEECCSSC--------------------CEEEEETTBCEEEEEETTEEEEEEEEESCEE
T ss_pred ECCcc-CCcEEecCC-eEEEEEEecCCCc--------------------eEEEEECCceEEEEecCCCCCCCceEeceEE
Confidence 35764 799999999 9999999997763 6889999865332 3688752 11 22235
Q ss_pred cCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccc--------------eEEEEEEcCCCCCCCCCCCCC--CC
Q 008071 171 KEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGL--------------VGAYIVRHHDVETPLRLPSGD--EF 234 (579)
Q Consensus 171 i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL--------------~G~lIV~dp~~~~~~~lp~~~--~~ 234 (579)
+.||+++ +..+.++ ++|.||++++.......+. .|| ....+++-........+|... ..
T Consensus 240 l~pgeR~---dv~v~~~-~~G~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~l~~~~ 314 (439)
T 2xu9_A 240 LAPGERA---EVLVRLR-KEGRFLLQALPYDRGAMGM-MDMGGMAHAMPQGPSRPETLLYLIAPKNPKPLPLPKALSPFP 314 (439)
T ss_dssp ECTTCEE---EEEEECC-SSEEEEEEEECCCCCCEEE-ECSSSCCEEEECCSCCCEEEEEEEECSSCCCCCCCSCCCCCC
T ss_pred ECCceeE---EEEEEcC-CCceEEEEecccccCCccc-cccccccccccCCCCCcceeEEEEecCCCccccCcccCCCcc
Confidence 7899998 8888888 4999999998643211110 122 112222211101112223210 00
Q ss_pred cee--EEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC----eEEecC-cEEEEEEEecCCCeeEEE
Q 008071 235 DRP--LVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP----RMTVRR-RKYRFRIINASNARFYRF 307 (579)
Q Consensus 235 e~~--lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P----~~~v~~-~~~RlRllNa~~~~~~~l 307 (579)
+.. -.-..+.+.. +..+..+.|||+.+. .+.++. ++++|+|.|.+. ..++|
T Consensus 315 ~l~~~~~~r~~~l~~---------------------~~~g~~~~iNg~~~~~~~~~~~~~~g~~~~~~~~N~~~-~~HP~ 372 (439)
T 2xu9_A 315 TLPAPVVTRRLVLTE---------------------DMMAARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGD-MDHPF 372 (439)
T ss_dssp CCCCCSEEEEEEEEE---------------------EGGGTEEEETTBCCCTTCCCEEECTTCEEEEEEEECSS-SCEEE
T ss_pred cCCCCCcceEEEEEe---------------------eccCceEeECCEECCCCCCceecCCCCEEEEEEEcCCC-CCCCc
Confidence 000 0000000000 001246889999873 367776 899999999975 45999
Q ss_pred EEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEe
Q 008071 308 FFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 308 ~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~ 359 (579)
|| ||+.|+|++.+|+..+.|..+|++.|.||+++.|.++++.++ .+.+.
T Consensus 373 HL-HG~~F~Vl~~~g~~~~~p~~rDTv~v~p~~~v~i~f~adnpG--~w~~H 421 (439)
T 2xu9_A 373 HL-HVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKG--RTVFH 421 (439)
T ss_dssp EE-SSCCBEEEEETTEECSSCCCBSEEEECTTCEEEEEEECCSCE--EEEEE
T ss_pred ee-CCCcEEEEeeCCCCCCCCCCeEEEEeCCCCEEEEEEEcCCCC--CEEEE
Confidence 99 999999999999988789999999999999999999976653 45443
No 51
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=99.17 E-value=4.5e-10 Score=120.98 Aligned_cols=204 Identities=11% Similarity=0.064 Sum_probs=124.3
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEee-CCCCCC-CCCCCCCC---cccccc
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHL-HGGIDE-PESDGNAN---SWFTAG 169 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~-HG~~~~-~~~DG~p~---~~~t~~ 169 (579)
+||+ +.|+|+|++| ++++|+.|..... ...+|+ ||.... -..||.+- ..+...
T Consensus 187 iNG~-~~p~~~v~~g-~~RlRliNa~~~~--------------------~~~~~i~dg~~~~vi~~DG~~~~~P~~~~~l 244 (451)
T 2uxt_A 187 VNGV-QSPYVEVSRG-WVRLRLLNASNSR--------------------RYQLQMNDGRPLHVISGDQGFLPAPVSVKQL 244 (451)
T ss_dssp ETTE-ESCEEEECSS-EEEEEEEECCSSC--------------------CEEEEETTSCCEEEEECSSSEEEEEEEESSE
T ss_pred ECCc-ccceEEecCC-EEEEEEEccCCce--------------------eEEEEECCCCeEEEEEeCCCccCCceEeceE
Confidence 3576 4699999999 9999999997763 688999 886543 23788641 113344
Q ss_pred ccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccc---------eEEEEEEcCCCCC--CCCCCCCCCCceeE
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGL---------VGAYIVRHHDVET--PLRLPSGDEFDRPL 238 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL---------~G~lIV~dp~~~~--~~~lp~~~~~e~~l 238 (579)
.+.||+++ ++-+.++ ++|+||++++.... ......|+ ...+-++...... ...+|..
T Consensus 245 ~l~pgeR~---dvlv~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~p~~------- 312 (451)
T 2uxt_A 245 SLAPGERR---EILVDMS-NGDEVSITCGEAAS-IVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMR------- 312 (451)
T ss_dssp EECTTCEE---EEEEECT-TCCCEEEEC-----------------CCCCSCCEEEEEEECSCCC----CCCSC-------
T ss_pred EECceeEE---EEEEEeC-CCCEEEEEecCccc-cccccccccccCCCCCCcceEEEEecCCCcCccccCccc-------
Confidence 68899999 8888888 67999999987421 00000011 0111111000000 0000100
Q ss_pred EEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC----eEEecC-cEEEEEEEecCCCeeEEEEEcCCC
Q 008071 239 VVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP----RMTVRR-RKYRFRIINASNARFYRFFFTNGL 313 (579)
Q Consensus 239 vl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P----~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~ 313 (579)
|..+ ..... + ....-.-.+.+ .++|||+.++ .+.++. ++++|+|.|. ..+.||| ||+
T Consensus 313 -L~~~----------~~~~~-~-~~~~~~~~l~~-~~~iNg~~f~~~~~~~~~~~G~~~~~~l~N~---~~HP~HL-HGh 374 (451)
T 2uxt_A 313 -LLPT----------EIMAG-S-PIRSRDISLGD-DPGINGQLWDVNRIDVTAQQGTWERWTVRAD---EPQAFHI-EGV 374 (451)
T ss_dssp -SSSS----------CCCCC-C-CSEEEEEEECS-SSSBTTBCCCTTCCCEEEETTCEEEEEEEEE---EEEEEEE-TTC
T ss_pred -cCCC----------CCCCC-C-CcceEEEEEee-EEEECCEeCCCCCCcEEcCCCCEEEEEEECC---CCcCeEE-CCc
Confidence 0000 00000 0 00000000001 3679999863 477777 8999999998 4699999 899
Q ss_pred eEEEEecCCCccC--ccEEecEEEeCcceEEEEEEEcCCCC
Q 008071 314 RFIHVAADSAYLG--RPVVTNETLLAPSEIADVVIDFSESK 352 (579)
Q Consensus 314 ~f~via~DG~~l~--~p~~~~~l~l~pgeR~dvlv~~~~~~ 352 (579)
.|+|++.||..++ .|..+|++.| |+++.|.++|++++
T Consensus 375 ~F~Vl~~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~dnpg 413 (451)
T 2uxt_A 375 MFQIRNVNGAMPFPEDRGWKDTVWV--DGQVELLVYFGQPS 413 (451)
T ss_dssp EEEEEEETTBCCCGGGSSCBSEEEE--EEEEEEEEECCSCC
T ss_pred eEEEEeeCCcCCCcccCCCccEEEE--CCEEEEEEEeCCCC
Confidence 9999999998764 4788999999 99999999998864
No 52
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.16 E-value=7.2e-10 Score=121.07 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=135.8
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCccc--cccccCCCCcc
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNANSWF--TAGFKEKGPTW 177 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~--t~~~i~PG~~~ 177 (579)
.|+|+|++|+++++|+.|..... ...+|++|....- ..||.+-..+ ..-.+.||+++
T Consensus 184 ~~~~~v~~g~~~RlRliN~~~~~--------------------~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~l~pgeR~ 243 (503)
T 1hfu_A 184 LSIVNVEQGKKYRMRLISLSCDP--------------------NWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRY 243 (503)
T ss_dssp CCEEEECTTCEEEEEEEECCSSC--------------------CEEEEETTCCEEEEEETTEEEEEEEESBEEECTTCEE
T ss_pred ceEEEEcCCCEEEEEEEecCCcc--------------------cEEEEEcCceEEEEeccCccccccccCeEEEcccceE
Confidence 39999999999999999997763 5788988865432 3788753221 12247899999
Q ss_pred eeeeEEEeCCCCCceeeeecCCC-Chhh--hhhcccceEEEEEEcCCCCCCCCCCCCCC-CceeEEEEeeeeecCCcEEe
Q 008071 178 TKKTYHYHNMQQPGNLWYHDHAM-GLTR--INLLAGLVGAYIVRHHDVETPLRLPSGDE-FDRPLVVFDRSFRTDGSIYM 253 (579)
Q Consensus 178 ~~~~y~~~~~~~~Gt~wYH~H~~-g~t~--~qv~~GL~G~lIV~dp~~~~~~~lp~~~~-~e~~lvl~D~~~~~~g~~~~ 253 (579)
+..+.+++.+|.||.+++.. +... .....|+..+++.-+.... . .|.... .+. ..+.+..+..-.....
T Consensus 244 ---dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~-~--~p~~~~~~~~-~~l~~~~l~p~~~~~~ 316 (503)
T 1hfu_A 244 ---SFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAAN-A--DPTTSANPNP-AQLNEADLHALIDPAA 316 (503)
T ss_dssp ---EEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCS-S--CCCCCCCSSC-CBCCGGGCBBSSSCSC
T ss_pred ---EEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCC-C--CCCCCCCCcc-CCCccccccccCccCC
Confidence 88888887789999999864 2111 0123445445554422211 0 011000 000 0000000000000000
Q ss_pred cCCCCCC-CCCCCC--CCCCCCcEEEECCcccC-------------------------eEEecC-cEEEEEEEecCCCee
Q 008071 254 NSTGNNP-SIHPQW--QPEYFGDAIIVNGKAWP-------------------------RMTVRR-RKYRFRIINASNARF 304 (579)
Q Consensus 254 ~~~g~~~-~~~~~~--~~~~~gd~~~VNG~~~P-------------------------~~~v~~-~~~RlRllNa~~~~~ 304 (579)
+. ...+ ..+... ..++.+..+.|||+.+. .+.++. ++++++++|......
T Consensus 317 p~-~~~~~~~~~~~~l~~~~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~~n~~~~~ 395 (503)
T 1hfu_A 317 PG-IPTPGAADVNLRFQLGFSGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPRNQVVELVVPAGVLGGP 395 (503)
T ss_dssp SS-CSSTTCSSEEEECCEEEETTEEEETTBCCCCCSSCHHHHHHTTCCSGGGSSSTTSEEEECSSCEEEEEEECCSTTCC
T ss_pred CC-cccCCcceEEEEEEeeccCceEEECCCccCCCCCcchhhhhcCCcccccCCCCceEEEccCCCEEEEEEECCCCCCC
Confidence 00 0000 000000 00011236789998762 256666 899999995444457
Q ss_pred EEEEEcCCCeEEEEecCCCc---cCccEEecEEEe-CcceEEEEEEEcCCCCCcEEEEe
Q 008071 305 YRFFFTNGLRFIHVAADSAY---LGRPVVTNETLL-APSEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 305 ~~l~l~~g~~f~via~DG~~---l~~p~~~~~l~l-~pgeR~dvlv~~~~~~g~~~~l~ 359 (579)
++||| ||+.|+|++.+|+. +..|..+|++.| .||+++.|.++++.++ .+.+.
T Consensus 396 HP~HL-HGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~adnPG--~W~~H 451 (503)
T 1hfu_A 396 HPFHL-HGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPG--PWFFH 451 (503)
T ss_dssp CEEEE-TTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCSCE--EEEEE
T ss_pred CCEEE-ecceEEEEecCCCCccccCCCCeeeeEEecCCCceEEEEEEcCCCe--eeeEe
Confidence 99999 89999999999975 346889999999 7999999999988764 55554
No 53
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.12 E-value=8.5e-10 Score=120.99 Aligned_cols=223 Identities=11% Similarity=0.058 Sum_probs=133.5
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCccc--cccccCCCCcce
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNANSWF--TAGFKEKGPTWT 178 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~--t~~~i~PG~~~~ 178 (579)
|+|+|++|+++++|+.|..... ...+|++|....- ..||.+-..+ ..-.+.||+++
T Consensus 212 ~~~~v~~G~~~RlRliNa~~~~--------------------~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~l~pgqR~- 270 (521)
T 1v10_A 212 AVVSVQSGKRYRFRIVSTSCFP--------------------NYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRY- 270 (521)
T ss_dssp CEEEECTTCEEEEEEEECCSSC--------------------CEEEEETTCCEEEEEETTEEEEEEEESBEEECTTCEE-
T ss_pred eEEEECCCCEEEEEEEecCCcc--------------------cEEEEECCCeEEEEecCCccccceeeeeEEEcccceE-
Confidence 8999999999999999997763 5789998865432 3688753221 12247899999
Q ss_pred eeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEeeeeecCCcEEecCCCC
Q 008071 179 KKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFDRSFRTDGSIYMNSTGN 258 (579)
Q Consensus 179 ~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D~~~~~~g~~~~~~~g~ 258 (579)
+..+.+++.+|.||.+++.... ......|+..+++.-+.... . .|.....+ ...+.+..+..-.....+. ..
T Consensus 271 --dvlv~~~~~~g~y~i~~~~~~~-~~~~~~~~~~ail~y~~~~~-~--~p~~~~~~-~~~~~~~~l~p~~~~~~p~-~~ 342 (521)
T 1v10_A 271 --SVVVEANQAVGNYWIRANPSNG-RNGFTGGINSAIFRYQGAAV-A--EPTTSQNS-GTALNEANLIPLINPGAPG-NP 342 (521)
T ss_dssp --EEEEECCSCSSEEEEEEEESSS-SCSCGGGTTEEEEEETTCCS-C--CCCCCCCC-SCBCCGGGCCBSSCCCCSS-CS
T ss_pred --EEEEEcCCCCCceeeeeccccc-cccCCCCceeEEEEECCCCC-C--CCCCCCCc-ccccchhhcccCCcccCCC-cc
Confidence 8888888778999999986421 01123455445554432211 0 01110000 0000000000000000000 00
Q ss_pred CC-CCCC--CCCCCCCCc--EEEECCcccC-------------------------eEEecC-cEEEEEEEecCCCeeEEE
Q 008071 259 NP-SIHP--QWQPEYFGD--AIIVNGKAWP-------------------------RMTVRR-RKYRFRIINASNARFYRF 307 (579)
Q Consensus 259 ~~-~~~~--~~~~~~~gd--~~~VNG~~~P-------------------------~~~v~~-~~~RlRllNa~~~~~~~l 307 (579)
.+ ..+. ....++.+. .+.|||+.+. .+.++. ++++++++| ...++|
T Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~N---~~~HP~ 419 (521)
T 1v10_A 343 VPGGADINLNLRIGRNATTADFTINGAPFIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPG---GGNHPF 419 (521)
T ss_dssp STTCSSEEEECCEECCSSSSCCEESSCCCCCCSSCHHHHHHHTCCCGGGSSSTTTEEEECTTCEEEEEEEC---CBSCEE
T ss_pred cCCcceEEEEEEEecCCceeEEEECCCcccCCCCchhhhhhcCCcccccCCCCceEEEecCCCEEEEEEcC---CCCCCE
Confidence 00 0000 000000111 5678888762 256666 899999999 356999
Q ss_pred EEcCCCeEEEEecCCCc---cCccEEecEEEe-CcceEEEEEEEcCCCCCcEEEEe
Q 008071 308 FFTNGLRFIHVAADSAY---LGRPVVTNETLL-APSEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 308 ~l~~g~~f~via~DG~~---l~~p~~~~~l~l-~pgeR~dvlv~~~~~~g~~~~l~ 359 (579)
|| ||+.|+|++.+|+. +..|..+|++.| .||+++.|.++++.++ .+.+.
T Consensus 420 HL-HGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aDNPG--~W~~H 472 (521)
T 1v10_A 420 HL-HGHNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPG--PWFLH 472 (521)
T ss_dssp EE-SSCCEEEEECTTCSCCCCSSCCEESEEECCBSSCEEEEEEECCSCE--EEEEE
T ss_pred EE-ccceEEEEecCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeCCCe--eEEEe
Confidence 99 89999999999875 346889999999 7999999999988764 55544
No 54
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.11 E-value=2.3e-10 Score=104.87 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=58.9
Q ss_pred CCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC--------CCCCCCccccccc
Q 008071 99 VPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE--------SDGNANSWFTAGF 170 (579)
Q Consensus 99 ~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~--------~DG~p~~~~t~~~ 170 (579)
.++|+|+|++||+|+|+++|.... ..|.+.+..... ++..++....+ .
T Consensus 58 ~~~p~i~V~~GD~V~~~~tN~~~~-----------------------~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~ 113 (154)
T 2cal_A 58 KKNPTLEIPAGATVDVTFINTNKG-----------------------FGHSFDITKKGPPYAVMPVIDPIVAGTGFSP-V 113 (154)
T ss_dssp EESCEEEECTTCEEEEEEEECCTT-----------------------CCCCCEEESCCSCCCSSCCCCSEEEEBCCCC-C
T ss_pred CCCCEEEEeCCCEEEEEEEcCCCC-----------------------eeeEEEEeecCcchhcccccccccccccccc-c
Confidence 378999999999999999996321 122222221111 11111000111 5
Q ss_pred cCCCC--cceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 171 KEKGP--TWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 171 i~PG~--~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
|.||+ ++ +|.|++ ++|+||||||..+ |..+||+|.|+|+
T Consensus 114 i~PG~sgt~---t~tft~--~pGtY~y~C~~~g----H~~~GM~G~IiV~ 154 (154)
T 2cal_A 114 PKDGKFGYT---DFTWHP--TAGTYYYVCQIPG----MAATGMFGKIVVK 154 (154)
T ss_dssp CBTTBEEEE---EEEECC--CSEEEEEECCSTT----TGGGTCEEEEEEC
T ss_pred cCCCCceEE---EEEEEE--CCceEEEECCCCC----HHHCCCEEEEEEC
Confidence 78999 77 999997 8999999999754 6779999999985
No 55
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.11 E-value=4.1e-11 Score=108.09 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=73.3
Q ss_pred cCeecCCCcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccc
Q 008071 434 NGKSYEEPVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512 (579)
Q Consensus 434 Ng~~~~~~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~ 512 (579)
++..|+ |..+.++.|++++|+|.|.+.+ .|.||+|.....+.. ..|...+.... .. + ..
T Consensus 28 ~~~~F~-p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~-------~~~~~~~~~g~------~~----~--~~ 87 (139)
T 2aan_A 28 EELAFD-KTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAA-------NIANAGLSAGP------AA----N--YL 87 (139)
T ss_dssp TSSSBS-CSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHH-------HHHHHHHHHCG------GG----T--TC
T ss_pred CccEEc-CCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccch-------hhhhhhhcccc------cc----c--cc
Confidence 455664 5667899999999999999888 899999985431110 00111100000 00 0 00
Q ss_pred cccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 513 ~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+......|+|+..|.||++.++.+.+. +|| |+||||+..|.+ ||+..|.|.
T Consensus 88 p~~~~~~~~~t~~l~pGet~~v~f~~~--------------~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 88 PADKSNIIAESPLANGNETVEVTFTAP--------------AAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CSCCTTEEEECCCBCTTCEEEEEEECC--------------SSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred CcccccccccccccCCCCEEEEEEECC--------------CCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 111123588999999999988855543 678 999999999999 999999873
No 56
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=99.10 E-value=1.8e-10 Score=98.67 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=58.8
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
.++|++++||+|+ |+|.... ++++|+++. +||.+. +.+..+.||+++
T Consensus 32 P~~i~v~~Gd~V~--~~N~d~~---------------------~H~v~~~~~-----~~g~~~--~~~~~~~pG~~~--- 78 (105)
T 2ov0_A 32 TPELHVKVGDTVT--WINREAM---------------------PHNVHFVAG-----VLGEAA--LKGPMMKKEQAY--- 78 (105)
T ss_dssp SSEEEECTTCEEE--EEECSSS---------------------CBCCEECTT-----TSSSSC--EECCCBCTTEEE---
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------CEEEEEcCC-----CCCccc--ccccccCCCCEE---
Confidence 7899999999965 5688664 789999863 256543 555568899988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+|.| + .+|+|||||+.|. ||.|.|+|+
T Consensus 79 ~~tf--~-~~G~y~y~C~~H~--------gM~G~i~V~ 105 (105)
T 2ov0_A 79 SLTF--T-EAGTYDYHCTPHP--------FMRGKVVVE 105 (105)
T ss_dssp EEEE--C-SCEEEEEECSSCT--------TCEEEEEEC
T ss_pred EEEe--C-CCEEEEEEeCCCC--------CCEEEEEEC
Confidence 8888 4 8999999999973 999999985
No 57
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=99.09 E-value=3.3e-10 Score=98.10 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=65.4
Q ss_pred eeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCcccc
Q 008071 88 YAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFT 167 (579)
Q Consensus 88 w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t 167 (579)
++|+ +++++|.|++++||+|+++|+|.... .+++++.+. | +
T Consensus 29 ~~~~-----~~f~p~~i~v~~G~~V~~~~~n~d~~---------------------~H~~~i~~~-------~-----~- 69 (112)
T 1iby_A 29 RAFN-----VLNEPETLVVKKGDAVKVVVENKSPI---------------------SEGFSIDAF-------G-----V- 69 (112)
T ss_dssp EEEE-----EEEESCEEEEETTCEEEEEEEECSSS---------------------CEEEEEGGG-------T-----E-
T ss_pred EEEe-----eEEcCCEEEEeCCCEEEEEEEECCCC---------------------eEEEEEcCC-------C-----c-
Confidence 4776 77889999999999999999998653 344444322 2 2
Q ss_pred ccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 168 AGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 168 ~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
+..+.||+++ +|.|+++ ++|+||||||.++.. .+|.|.|+|.|
T Consensus 70 ~~~i~pG~~~---~~~f~~~-~~G~y~~~C~~~~~~-----~~M~g~i~V~~ 112 (112)
T 1iby_A 70 QEVIKAGETK---TISFTAD-KAGAFTIWCQLHPKN-----IHLPGTLNVVE 112 (112)
T ss_dssp EEEECTTCEE---EEEEECC-SCEEEEEBCSSSCTT-----TBCCEEEEEEC
T ss_pred eeEeCCCCEE---EEEEECC-CCEEEEEECCCCCch-----HHCEEEEEEeC
Confidence 2258899999 9999987 999999999998632 23999999974
No 58
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=7.8e-11 Score=129.14 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=78.8
Q ss_pred EEEeE-EEEEEEecCCCCCcceeeecCCCCCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 008071 67 LKIGM-FKKKWKFHRDLPPTPVYAYGTSKHTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPT 145 (579)
Q Consensus 67 ~~i~~-~~~~~~~~~~~~~~~~w~y~~~~~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t 145 (579)
++|++ .+...+..... ...+|+|+ +++++|+|++++||+|+++++|.+... ...+
T Consensus 483 v~L~~~~~~v~r~g~~v-~V~m~~~n-----~~f~pp~I~V~~Gd~V~~~ltN~d~~~------------------Dv~H 538 (595)
T 1fwx_A 483 VDIDNWTEEVIRDGNKV-RVYMSSVA-----PSFSIESFTVKEGDEVTVIVTNLDEID------------------DLTH 538 (595)
T ss_dssp CCTTSCCCCEEEETTEE-EEEEEEET-----TEESCSEEEEETTCEEEEEEEECCCST------------------TCCE
T ss_pred ccccccccceeecCCcc-ceeEEEec-----CcccCCEEEEECCCEEEEEEEeCCCCC------------------Ccee
Confidence 34444 44445554333 56799997 999999999999999999999986531 0134
Q ss_pred EEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 146 VVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 146 ~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
+++.++. |. . ..+.||+++ +|.|+++ ++|+||||||..... .| .||+|.|+|++
T Consensus 539 gf~ip~~-------gv-----~-~~i~PG~t~---t~~Fta~-~pGtY~yhC~e~Cg~-~H--~gM~G~IiV~p 592 (595)
T 1fwx_A 539 GFTMGNY-------GV-----A-MEIGPQMTS---SVTFVAA-NPGVYWYYCQWFCHA-LH--MEMRGRMLVEP 592 (595)
T ss_dssp EEEETTT-------TE-----E-EEECTTCEE---EEEEECC-SCEEEEEECCSCCST-TC--TTCEEEEEEEC
T ss_pred eEEecCC-------Cc-----c-eeeCCCCeE---EEEEECC-CCEEEEEECCCCCCC-Cc--cCCEEEEEEEc
Confidence 4544432 21 1 248899999 9999998 999999999953322 24 49999999994
No 59
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.00 E-value=7.5e-10 Score=114.95 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=75.8
Q ss_pred CCCCC--CccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCC---CC---ccc
Q 008071 95 HTATV--PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGN---AN---SWF 166 (579)
Q Consensus 95 ~ng~~--PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~---p~---~~~ 166 (579)
+||+. ..|+|++++||+|++++.|.... .+.+|+||....-..+|. |. .+.
T Consensus 200 iNG~~~~~~~~l~v~~Ge~vri~l~N~g~~---------------------~HpfHlHGh~f~v~~~G~~~~p~~~~~~~ 258 (343)
T 3cg8_A 200 INNRKPHTGPDFEATVGDRVEIVMITHGEY---------------------YHTFHMHGHRWADNRTGILTGPDDPSRVI 258 (343)
T ss_dssp ETTCCTTCCCCEEEETTCEEEEEEEEESSC---------------------CEEEEETTCCEESSSSSSCCSTTCCCCEE
T ss_pred ecccCCCCCccEEeCCCCEEEEEEEcCCcc---------------------ccccEecCcEEEEeccCcccCCCCcccce
Confidence 46775 47899999999999999998765 799999998633222332 11 112
Q ss_pred cccccCCCCcceeeeEEEeCC--CCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 167 TAGFKEKGPTWTKKTYHYHNM--QQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 167 t~~~i~PG~~~~~~~y~~~~~--~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
....|.||+++ +|.|.++ ..+|+|+||||.. .|...||.|.++|.+++
T Consensus 259 Dtv~v~PG~~~---~v~~~~~~~~~pG~w~~HCHi~----~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 259 DNKITGPADSF---GFQIIAGEGVGAGAWMYHCHVQ----SHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp SEEEECTTCEE---EEEEETTTTTCSEEEEEEECSH----HHHHTTCEEEEEEECTT
T ss_pred eeEEeCCCCEE---EEEEEECCCCCCeeEEEeCCCH----HHHhccCcEEEEEecCC
Confidence 22358899999 9999963 3899999999985 57889999999999654
No 60
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=98.95 E-value=5.1e-08 Score=107.66 Aligned_cols=218 Identities=11% Similarity=0.112 Sum_probs=144.2
Q ss_pred cEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEE-ecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 273 DAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHV-AADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 273 d~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~vi-a~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
..+++||+. .|.|.++. +++++++.|........||. ||....-. ..||.+- +..-.|.||+++.-.+++.
T Consensus 23 ~~~~~Ng~~PGP~I~~~~GD~v~v~v~N~l~~~~tsiHw-HGl~~~~~~~~DGv~~-----vtq~~I~PG~s~tY~f~~~ 96 (552)
T 1aoz_A 23 IVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHW-HGILQRGTPWADGTAS-----ISQCAINPGETFFYNFTVD 96 (552)
T ss_dssp EEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEE-ETCCCTTCGGGSCCBT-----TTBCCBCTTCEEEEEEECC
T ss_pred EEEEECCccCCCcEEEeCCCEEEEEEEeCCCCCCeeEEe-CCCccCCCcccCCCcc-----cccCCcCCCCeEEEEEECC
Confidence 589999985 69999988 99999999999755678998 78432111 2588763 2234578999999999985
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCccceEEEEEeeecC-----
Q 008071 350 ESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIKKNHELDTWRVPEKLIKYPSPNPSSASRTRYIAMYEYTSD----- 424 (579)
Q Consensus 350 ~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~~~~~~~~~~~P~~L~~~~~~~~~~~~~~r~~~l~~~~~~----- 424 (579)
+. | +|+-.+....++..| -.-.+.|..... ... +++ .+.+..+.|.+....
T Consensus 97 ~~-G-T~wYHsH~~~q~~~G--------l~G~liV~~~~~---~~~-----~~~------~d~e~~l~l~Dw~~~~~~~~ 152 (552)
T 1aoz_A 97 NP-G-TFFYHGHLGMQRSAG--------LYGSLIVDPPQG---KKE-----PFH------YDGEINLLLSDWWHQSIHKQ 152 (552)
T ss_dssp SC-E-EEEEEECSTTTGGGT--------CEEEEEEECCTT---CCC-----SSC------CSEEEEEEEEEECSSCHHHH
T ss_pred CC-E-EEEEEECchhHHhcc--------CeeeEEEeCCcc---cCC-----CCC------CCccceEEeecccCCCHHHH
Confidence 54 3 888887653322222 112233433211 001 110 112333444322100
Q ss_pred -----------CCCcceEEEcCeecCC-----------------------CcccccCCCCeEEEEEEeCCCC-Cceeeee
Q 008071 425 -----------IDEPTHLFINGKSYEE-----------------------PVTETPKAGTSEVWNVINLTED-NHPLHIH 469 (579)
Q Consensus 425 -----------~g~~~~~~iNg~~~~~-----------------------~~~~~~~~G~~~~w~l~N~~~~-~HP~HlH 469 (579)
.+.+..++|||+...+ +..+.++.|++++|.|+|.+.. .+-|||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~liNG~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~ 232 (552)
T 1aoz_A 153 EVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIG 232 (552)
T ss_dssp HHHTTSSSCCCCCSCSEEEETTBCCSSSBTTGGGCTTSCBCCCCSCSTTSCCCEEECTTCEEEEEEEECCSSCEEEEEET
T ss_pred HhhhhcccccCCCCCCeEEECCccccCcccCcccccccccccccCCCCCCceEEEEcCCCEEEEEEEcccccceEEEEEc
Confidence 1234568999987541 1146788999999999999765 7899999
Q ss_pred eccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCC
Q 008071 470 LGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPF 549 (579)
Q Consensus 470 g~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~ 549 (579)
||.|+|++.. |... +|...|++.|.||+++.|+|+++.
T Consensus 233 gh~~~vi~~D----------------------------G~~~-----~P~~~~~l~i~pgqR~dvlv~~~~--------- 270 (552)
T 1aoz_A 233 NHQLLVVEAD----------------------------GNYV-----QPFYTSDIDIYSGESYSVLITTDQ--------- 270 (552)
T ss_dssp TCCEEEEEET----------------------------TEEE-----EEEEESCEEECTTCEEEEEEECCS---------
T ss_pred CcEEEEEEEC----------------------------Cccc-----CceEEeEEEEcCCcEEEEEEEcCC---------
Confidence 9999999873 3211 345679999999999999999851
Q ss_pred CCCCCCc-eEEeecccc
Q 008071 550 DPTAEPG-YVYHCHVLD 565 (579)
Q Consensus 550 ~~~~npg-w~~HCHil~ 565 (579)
..+| |.++|+...
T Consensus 271 ---~~~g~y~i~~~~~~ 284 (552)
T 1aoz_A 271 ---NPSENYWVSVGTRA 284 (552)
T ss_dssp ---CTTCCEEEEEEEES
T ss_pred ---CCCCCEEEEEEccc
Confidence 1346 889999875
No 61
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=98.92 E-value=1.8e-08 Score=109.54 Aligned_cols=230 Identities=10% Similarity=0.073 Sum_probs=132.8
Q ss_pred CccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCC-CCCCCCCCcccc--ccccCCCCc
Q 008071 100 PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDE-PESDGNANSWFT--AGFKEKGPT 176 (579)
Q Consensus 100 PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~-~~~DG~p~~~~t--~~~i~PG~~ 176 (579)
+-|.|+|++|+++++|+.|..... ...+|++|.... -..||.+...++ .-.|.||++
T Consensus 187 ~~~~~~v~~G~~~RlRliN~~~~~--------------------~~~~~i~gh~~~via~DG~~~~P~~~~~l~i~pGqR 246 (495)
T 3t6v_A 187 PLSVITVEVGKRYRMRLVSISCDP--------------------NYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQR 246 (495)
T ss_dssp CCCEEEECTTCEEEEEEEECCSSC--------------------CEEEEETTCCEEEEEETTEEEEEEEESBEEECTTCE
T ss_pred CceEEEEcCCCEEEEEEEecCCCe--------------------eEEEEECCCeEEEEEeCCcccCCEEeeeEEEcCceE
Confidence 457999999999999999986652 578888886532 236887533221 224789999
Q ss_pred ceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeE-EEEeeeeecCCcEEecC
Q 008071 177 WTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPL-VVFDRSFRTDGSIYMNS 255 (579)
Q Consensus 177 ~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~l-vl~D~~~~~~g~~~~~~ 255 (579)
+ +.-+.+++.+|.||.++..... ......|..-+++..+.. ... .|......... .+.+..+..-.....+.
T Consensus 247 ~---dvlv~~~~~~g~y~i~a~~~~~-~~~~~~~~~~ail~Y~~~-~~~--~p~~~~~~~~~~~~~~~~L~p~~~~~~p~ 319 (495)
T 3t6v_A 247 Y---SFVLNANQPVGNYWIRANPNSG-GEGFDGGINSAILRYDGA-TTA--DPVTVASTVHTKCLIETDLHPLSRNGVPG 319 (495)
T ss_dssp E---EEEEECCSCSSEEEEEEEESSS-SCSCGGGTTEEEEEETTS-CSS--CCCCCCCSSCSSBCCGGGCCBSSCCCCSS
T ss_pred E---EEEEECCCCCceEEEEEecccC-ccccCCCceEEEEEECCC-CCC--CCCCCCCCCCccccccccccccccccCCC
Confidence 8 8888998778999999864211 011123443445544322 110 01100000000 00010000000000000
Q ss_pred CCC--CCCCCCCCCCCCCCcEEEECCcccC-------------------------eEEecC-cEEEEEEEecCCCeeEEE
Q 008071 256 TGN--NPSIHPQWQPEYFGDAIIVNGKAWP-------------------------RMTVRR-RKYRFRIINASNARFYRF 307 (579)
Q Consensus 256 ~g~--~~~~~~~~~~~~~gd~~~VNG~~~P-------------------------~~~v~~-~~~RlRllNa~~~~~~~l 307 (579)
... ..+..-...-++.+..+.|||+.+. .+.++. ++++|.|.|......++|
T Consensus 320 ~~~~~~~d~~~~l~~~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~n~~~~~HP~ 399 (495)
T 3t6v_A 320 NPHQGGADCNLNLSLGFACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPF 399 (495)
T ss_dssp CSSTTCSSEEEECCEEEETTEEEETTBCCCCCSSCHHHHHHTTCCSSTTSSSTTSEEEECTTCEEEEEEECCSSSCCCEE
T ss_pred ccCCCCCcEEEEEEEEecCcEEEEcCEecCCCCCcchhhhhcCCcCcccccCCcceEEecCCCEEEEEEccCCCCCCcce
Confidence 000 0000000000112346788987651 256666 899999984334457999
Q ss_pred EEcCCCeEEEEecCCCcc---CccEEecEEEeCc-ceEEEEEEEcCCCCCcEEEEe
Q 008071 308 FFTNGLRFIHVAADSAYL---GRPVVTNETLLAP-SEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 308 ~l~~g~~f~via~DG~~l---~~p~~~~~l~l~p-geR~dvlv~~~~~~g~~~~l~ 359 (579)
|| |||.|+|++.+|... ..|..+|++.|.+ |+.+.|-+.++.++ .+.+.
T Consensus 400 HL-HGh~F~vl~~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~adnPG--~W~~H 452 (495)
T 3t6v_A 400 HL-HGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPG--PWFLH 452 (495)
T ss_dssp EE-TTCCEEEEECTTCCCCCSSSCCEESEEECCSTTCEEEEEEECCSCE--EEEEE
T ss_pred ee-cCCcEEEEecCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcCCCe--eEEEE
Confidence 99 999999999988643 3688899999997 99999999888774 55544
No 62
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.88 E-value=2.9e-09 Score=90.73 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=62.5
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|++++| .|.+...|+||+|+..|... . |. . .....
T Consensus 18 p~~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~~~~--~----------------------------g~--~---~~~~~ 60 (105)
T 3cvb_A 18 PANVTVHPGDTVKW--VNNKLPPHNILFDDKQVPGA--S----------------------------KE--L---ADKLS 60 (105)
T ss_dssp SSEEEECTTEEEEE--EECSSCCEEEEECTTSSGGG--C----------------------------HH--H---HHHHC
T ss_pred CCEEEEcCCCEEEE--EECCCCCCeEEEeCCCCCcc--c----------------------------cc--c---ccccc
Confidence 45568999999987 48877899999999765321 0 00 0 00012
Q ss_pred cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 521 kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.++..+.||++.++ +|.. .++|| |.|||| .|...||+..|.|.
T Consensus 61 ~~~~~i~pG~~~~~--~f~~-----------~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 61 HSQLMFSPGESYEI--TFSS-----------DFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEECSTTCEEEE--EECT-----------TSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred ccccccCCCCeEEE--EEec-----------CCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 57889999998766 7741 03678 999999 79999999999885
No 63
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.86 E-value=6.1e-09 Score=88.99 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=60.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCc-c-ccccccCCCCcce
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANS-W-FTAGFKEKGPTWT 178 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~-~-~t~~~i~PG~~~~ 178 (579)
-+.|++++||+|+ |.|.... ++++|+|+...+. .+|.... + .....+.||+++
T Consensus 19 P~~i~v~~Gd~V~--~~n~~~~---------------------~H~~~~~~~~~~~-~~g~~~~~~~~~~~~~~pG~~~- 73 (106)
T 2gim_A 19 PAKLTIKPGDTVE--FLNNKVP---------------------PHNVVFDAALNPA-KSADLAKSLSHKQLLMSPGQST- 73 (106)
T ss_dssp SSEEEECTTCEEE--EEECSSS---------------------CCCBEECSSSSTT-CCHHHHHHHCBCSCCCSTTCEE-
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------CceEEEeCCCCcc-cccccchhccccceeeCCCCEE-
Confidence 4789999999875 5587544 6888888765533 2332000 0 122247899999
Q ss_pred eeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 179 KKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 179 ~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+|.|+++..+|+||||||.| ..+||.|.|+|+
T Consensus 74 --~~~f~~~~~~G~y~y~C~~H------~~~GM~G~i~V~ 105 (106)
T 2gim_A 74 --STTFPADAPAGEYTFYCEPH------RGAGMVGKITVA 105 (106)
T ss_dssp --EEECCTTCCSEEEEEECTTT------GGGTCEEEEEEC
T ss_pred --EEEEecCCCCceEEEEeCCh------hhcCcEEEEEEc
Confidence 99998744899999999944 458999999997
No 64
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.5e-07 Score=101.52 Aligned_cols=213 Identities=13% Similarity=0.076 Sum_probs=127.5
Q ss_pred CCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCC-CCCCCCCCccc--cccccC
Q 008071 96 TATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDE-PESDGNANSWF--TAGFKE 172 (579)
Q Consensus 96 ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~-~~~DG~p~~~~--t~~~i~ 172 (579)
||+. .|+|+|++|+++++|+.|..... ...+|++|.... -..||.+-... ..-.|.
T Consensus 173 NG~~-~~~~~v~~g~~~RlRliNa~~~~--------------------~~~~~i~gh~~~vi~~DG~~~~P~~~~~l~l~ 231 (534)
T 1zpu_A 173 NNTM-NLTWEVQPDTTYLLRIVNVGGFV--------------------SQYFWIEDHEMTVVEIDGITTEKNVTDMLYIT 231 (534)
T ss_dssp TTBS-SCEEECCSSCEEEEEEEECCSSC--------------------CEEEEETTBCEEEEEETTEEEEEEEESCEEEC
T ss_pred CCCC-ceEEEEECCCEEEEEEEeccCCc--------------------eEEEEEcCCeeEEEeccCcCccccEeceEEEC
Confidence 5764 69999999999999999987763 577888875432 13688643211 222478
Q ss_pred CCCcceeeeEEEeCCCC-CceeeeecCCCChhh---hhhcccceEEEEEEcCCCCCCC-----CCCC-C-----------
Q 008071 173 KGPTWTKKTYHYHNMQQ-PGNLWYHDHAMGLTR---INLLAGLVGAYIVRHHDVETPL-----RLPS-G----------- 231 (579)
Q Consensus 173 PG~~~~~~~y~~~~~~~-~Gt~wYH~H~~g~t~---~qv~~GL~G~lIV~dp~~~~~~-----~lp~-~----------- 231 (579)
||+++ +.-+.+++. .|.||.+........ .........+++..+.....+. .++. -
T Consensus 232 ~gqR~---dvlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~~~l~p~~~~ 308 (534)
T 1zpu_A 232 VAQRY---TVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKE 308 (534)
T ss_dssp TTCEE---EEEEECCSCSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBCCCCCCSCSSCSCCGGGCCBSSCC
T ss_pred ccceE---EEEEEcCCCCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCCCCCcccccccccccccceeCCCC
Confidence 99988 777777643 578999876532100 0000111122322211100000 0000 0
Q ss_pred ---CCCceeEEEEeeeee--cCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCccc------------------------
Q 008071 232 ---DEFDRPLVVFDRSFR--TDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAW------------------------ 282 (579)
Q Consensus 232 ---~~~e~~lvl~D~~~~--~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~------------------------ 282 (579)
...+..+.+. ..+. .++ ..++.|||+.+
T Consensus 309 ~~~~~~~~~~~l~-~~~~~~~~~----------------------~~~~~iNg~s~~~~~~P~L~~~~~~~~~~~~~~~~ 365 (534)
T 1zpu_A 309 AIYGEPDHVITVD-VVMDNLKNG----------------------VNYAFFNNITYTAPKVPTLMTVLSSGDQANNSEIY 365 (534)
T ss_dssp CCCCSCSEEEEEE-EEEEECTTS----------------------CEEEEETTBCCCCCSSCHHHHHTTSGGGTTCGGGG
T ss_pred CCCCCCCeEEEEE-EEeeccCCc----------------------eeEEEECCCcccCCCCCceeeecccCcccCCCccc
Confidence 0001111110 0000 000 12456777654
Q ss_pred ----CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCC-------------------ccCccEEecEEEeCc
Q 008071 283 ----PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSA-------------------YLGRPVVTNETLLAP 338 (579)
Q Consensus 283 ----P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~-------------------~l~~p~~~~~l~l~p 338 (579)
..+.++. ++++|.|.|.+. ..++||| |||.|+|++.+++ +...|..+|++.|.|
T Consensus 366 ~~~~~~~~~~~g~~v~ivi~N~~~-~~HP~HL-HGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~p 443 (534)
T 1zpu_A 366 GSNTHTFILEKDEIVEIVLNNQDT-GTHPFHL-HGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRP 443 (534)
T ss_dssp CSSSCEEEECTTCEEEEEEEECSS-SCEEEEE-TTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECT
T ss_pred CCCceEEEeCCCCEEEEEEeCCCC-CCCCeEe-cCCceEEEeecCCccccccCcccccCccccccccCCCCeeeEEEeCC
Confidence 1356776 899999999875 4699999 9999999998853 123578899999999
Q ss_pred ceEEEEEEEcCCCCCcEEEEe
Q 008071 339 SEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 339 geR~dvlv~~~~~~g~~~~l~ 359 (579)
|+.+.|.++++.++ .+.+.
T Consensus 444 gg~v~IrF~aDNPG--~W~~H 462 (534)
T 1zpu_A 444 QSNFVIRFKADNPG--VWFFH 462 (534)
T ss_dssp TCEEEEEEECCSCE--EEEEE
T ss_pred CCEEEEEEEeCCCe--eEEEE
Confidence 99999999988764 55544
No 65
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=98.81 E-value=5.8e-08 Score=105.56 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=130.7
Q ss_pred CccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCcccc--ccccCCCCc
Q 008071 100 PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNANSWFT--AGFKEKGPT 176 (579)
Q Consensus 100 PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~~~~t--~~~i~PG~~ 176 (579)
+-|.|+|++|+++++|+.|..... ...+|++|....- ..||.+...+. .-.|.||++
T Consensus 184 ~~~~~~v~~G~~~RlRliNa~~~~--------------------~~~~~i~gh~~~via~DG~~~~P~~~~~l~i~pGqR 243 (499)
T 3pxl_A 184 ELSVIKVTKGKRYRFRLVSLSCNP--------------------NHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQR 243 (499)
T ss_dssp CCCEEEECTTCEEEEEEEECCSSC--------------------CEEEEETTBCEEEEEETTEEEEEEEESBEEECTTCE
T ss_pred CcceEEEcCCCEEEEEEEecCCCe--------------------eEEEEECCCeEEEEEECCcccCceEeeeEEECCCcE
Confidence 457999999999999999986653 5788888865332 36887533221 224789999
Q ss_pred ceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCCCCCCCCCCCCC-CCceeEEEEeeeeecCCcEEecC
Q 008071 177 WTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHDVETPLRLPSGD-EFDRPLVVFDRSFRTDGSIYMNS 255 (579)
Q Consensus 177 ~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~-~~e~~lvl~D~~~~~~g~~~~~~ 255 (579)
+ +.-+.+++.+|.||..+...... .....+..-+++..+.. ... .|... ..... .+.+..+..-.....+.
T Consensus 244 ~---dvlv~~~~~~g~y~i~a~~~~~~-~~~~~~~~~ail~Y~~~-~~~--~p~~~~~~~~~-~~~~~~L~p~~~~~~p~ 315 (499)
T 3pxl_A 244 Y---SFVLDANQAVDNYWIRANPNFGN-VGFDGGINSAILRYDGA-PAV--EPTTNQTTSVK-PLNEVDLHPLVSTPVPG 315 (499)
T ss_dssp E---EEEEECCSCSSEEEEEEEESSSS-CSCGGGTTEEEEEETTS-CSS--CCCCCCCCCSS-BCCGGGCCBSSCCCCSS
T ss_pred E---EEEEECCCCCceEEEEEecccCc-cccCCCceEEEEEeCCC-CCC--CCCCCCCCCCc-ccccccccccccccCCC
Confidence 8 88889987789999987642110 01112232234433221 100 11100 00000 00010010000000000
Q ss_pred CC--CCCCCCCCCCCCCCCcEEEECCcccC-------------------------eEEecC-cEEEEEEEecC--CCeeE
Q 008071 256 TG--NNPSIHPQWQPEYFGDAIIVNGKAWP-------------------------RMTVRR-RKYRFRIINAS--NARFY 305 (579)
Q Consensus 256 ~g--~~~~~~~~~~~~~~gd~~~VNG~~~P-------------------------~~~v~~-~~~RlRllNa~--~~~~~ 305 (579)
.- ...+..-...-++.+..+.|||+.+. .+.++. ++++|.|.|.+ ....+
T Consensus 316 ~~~~~~~d~~~~l~~~~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~H 395 (499)
T 3pxl_A 316 APSSGGVDKAINMAFNFNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPH 395 (499)
T ss_dssp CSSTTCSSEEEECCEEECSSCEEETTBCCCCCSSCHHHHHHTTCCSTTTSSSTTSEEEECTTCEEEEEEECCTTSCSCSC
T ss_pred cccCCCCcEEEEEEEEecCcEEEEcCEecCCCCCchhhhhhcCCccccccCCCceeEEecCCCEEEEEEecCcccCCCCc
Confidence 00 00000000000112335778887651 256666 89999999533 23469
Q ss_pred EEEEcCCCeEEEEecCCCcc---CccEEecEEEeCc---ceEEEEEEEcCCCCCcEEEEe
Q 008071 306 RFFFTNGLRFIHVAADSAYL---GRPVVTNETLLAP---SEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 306 ~l~l~~g~~f~via~DG~~l---~~p~~~~~l~l~p---geR~dvlv~~~~~~g~~~~l~ 359 (579)
+||| |||.|+|++.+|... ..|..+|++.|.+ |+.+.|-+.++.++ .+.+.
T Consensus 396 P~HL-HGh~F~Vl~~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnPG--~W~~H 452 (499)
T 3pxl_A 396 PFHL-HGHTFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPG--PWFLH 452 (499)
T ss_dssp EEEE-TTCCEEEEECTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECCSCE--EEEEE
T ss_pred ccee-cCCcEEEEeccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcCCCc--eEEEE
Confidence 9999 999999999887543 3688999999986 99999999888764 45444
No 66
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=98.80 E-value=2.9e-07 Score=101.62 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=125.2
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCC-CCCCCCCCccc--cccccCCCCcc
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDE-PESDGNANSWF--TAGFKEKGPTW 177 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~-~~~DG~p~~~~--t~~~i~PG~~~ 177 (579)
-|+|+|++|+++++|+.|..... ...+|++|.... -..||.+-..+ ..-.|.||+++
T Consensus 214 ~~~~~v~~g~~~RlRliNa~~~~--------------------~~~~~i~gh~~~vi~~DG~~~~p~~~~~l~l~pgeR~ 273 (559)
T 2q9o_A 214 YANVTLTPGKRHRLRILNTSTEN--------------------HFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRY 273 (559)
T ss_dssp CCEEEECTTCEEEEEEEECCSSC--------------------CEEEEETTBCEEEEEETTEEEEEEEESCEEECTTCEE
T ss_pred ceEEEEcCCCEEEEEEEecCCCc--------------------eEEEEECCCceEEEecCCcccCceEeCeEEEccEEEE
Confidence 37999999999999999997763 578999886533 23688753211 12247899988
Q ss_pred eeeeEEEeCCCCCceeeeecCC--CCh-hhhhhcccceEEEEEEcCCCCCCCCCCCCCCCceeEEEEe-eeeecCCcEEe
Q 008071 178 TKKTYHYHNMQQPGNLWYHDHA--MGL-TRINLLAGLVGAYIVRHHDVETPLRLPSGDEFDRPLVVFD-RSFRTDGSIYM 253 (579)
Q Consensus 178 ~~~~y~~~~~~~~Gt~wYH~H~--~g~-t~~qv~~GL~G~lIV~dp~~~~~~~lp~~~~~e~~lvl~D-~~~~~~g~~~~ 253 (579)
+.-+.+++.+|.||..... ... .......+ .+.+...+.. . .+|...... ..| ..++. .++ .
T Consensus 274 ---dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~-~ail~y~~~~--~--~~P~~~~~~----~~~~~~~~~-~~l-~ 339 (559)
T 2q9o_A 274 ---DVVIDASRAPDNYWFNVTFGGQAACGGSLNPHP-AAIFHYAGAP--G--GLPTDEGTP----PVDHQCLDT-LDV-R 339 (559)
T ss_dssp ---EEEEECCSCSSEEEEEEECCGGGTTCCBSSSCC-EEEEEETTSC--C--SCCCCCCCC----CCCCTTCCC-SCC-C
T ss_pred ---EEEEECCCCCCcEEEEEEeccccccCCCCCCce-eEEEEECCCC--C--CCCCCCCCc----CCCcccccc-ccc-c
Confidence 8888888778999988775 110 00010111 2233332211 1 112110000 000 00000 000 0
Q ss_pred cCCCC-CCC--CCCC--C------C-CCCCCcEEEECCccc------C-----------------eEEecC-cEEEEEEE
Q 008071 254 NSTGN-NPS--IHPQ--W------Q-PEYFGDAIIVNGKAW------P-----------------RMTVRR-RKYRFRII 297 (579)
Q Consensus 254 ~~~g~-~~~--~~~~--~------~-~~~~gd~~~VNG~~~------P-----------------~~~v~~-~~~RlRll 297 (579)
+.... .+. .... . . .+.....+.|||+.+ | .+.+.. +.+++.++
T Consensus 340 p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~v~~~vi 419 (559)
T 2q9o_A 340 PVVPRSVPVNSFVKRPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLI 419 (559)
T ss_dssp BSSCCBCCCTTCCCCGGGEEEEEEECSSSSSCEEEETTBCCCCCTTSCHHHHHHHTCCCCCGGGCEEEECCSSCEEEEEE
T ss_pred cCCCCCCCCcccccceeEEEEEEeecCCCceEEEEECCEecccCCCCCcHhHhhcCCccCCCCceEEEcCCCCEEEEEEE
Confidence 00000 000 0000 0 0 001123688999875 2 145544 45555555
Q ss_pred ecCC----CeeEEEEEcCCCeEEEEecCC---------Ccc-----------CccEEecEEEeCcceEEEEEEEcCCCCC
Q 008071 298 NASN----ARFYRFFFTNGLRFIHVAADS---------AYL-----------GRPVVTNETLLAPSEIADVVIDFSESKS 353 (579)
Q Consensus 298 Na~~----~~~~~l~l~~g~~f~via~DG---------~~l-----------~~p~~~~~l~l~pgeR~dvlv~~~~~~g 353 (579)
|... ...|+||| |||.|+|++.++ +.. ..|..+|++.|.|++++.|.++++.++
T Consensus 420 ~n~~~~~~~~~HP~HL-HGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~adNPG- 497 (559)
T 2q9o_A 420 ENDPEGPFSLPHPMHL-HGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPG- 497 (559)
T ss_dssp EECTTSSCCCCEEEEE-SSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECCSCE-
T ss_pred eCCCccccCCCCcEEE-CCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcCCCe-
Confidence 5543 46799999 999999999987 432 146789999999999999999887764
Q ss_pred cEEEEe
Q 008071 354 DVAILA 359 (579)
Q Consensus 354 ~~~~l~ 359 (579)
.+.+.
T Consensus 498 -~W~~H 502 (559)
T 2q9o_A 498 -AWLFH 502 (559)
T ss_dssp -EEEEE
T ss_pred -eEEEE
Confidence 45443
No 67
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=98.78 E-value=2.4e-07 Score=100.16 Aligned_cols=216 Identities=11% Similarity=0.090 Sum_probs=129.0
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCC-c--cccccc
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNAN-S--WFTAGF 170 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~-~--~~t~~~ 170 (579)
.||+. .|+|.|++|+ |+|+.|..... ...+|++|....- ..||..- . .+..-.
T Consensus 216 vNG~~-~p~l~v~~g~--RlRliNa~~~~--------------------~~~l~i~g~~~~vIa~DGg~~~~P~~~~~l~ 272 (481)
T 3zx1_A 216 INGQF-KPKIKLATNE--RIRIYNATAAR--------------------YLNLRIQGAKFILVGTDGGLIEKTIYKEELF 272 (481)
T ss_dssp ETTEE-SCEEEEETTE--EEEEEECCSSC--------------------CEEEEETTCEEEEEEETTEEEEEEEEESSEE
T ss_pred ECCcc-CceEEecCCC--EEEEEecCCCe--------------------EEEEEECCCceEEEEcCCCccCCceEeCeEE
Confidence 35764 5899999999 99999987763 6889998876322 2676421 0 122235
Q ss_pred cCCCCcceeeeEEEeCCCCCceeeeecCCCChhh--hhhcccceEEEEEEcCCCCCCCCCCCC---------CCCceeEE
Q 008071 171 KEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTR--INLLAGLVGAYIVRHHDVETPLRLPSG---------DEFDRPLV 239 (579)
Q Consensus 171 i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~--~qv~~GL~G~lIV~dp~~~~~~~lp~~---------~~~e~~lv 239 (579)
|.||+++ +.-+..+ +.|+|..-++..+... ......-.-.+-++-.... ..+|.. .+.++.+.
T Consensus 273 l~pgeR~---dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~lP~~l~~~~~~~~~~~~r~~~ 346 (481)
T 3zx1_A 273 LSPASRV---EVLIDAP-KDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKEN--VELPKNLKIFKPSEEPKEFKEII 346 (481)
T ss_dssp ECTTCEE---EEEEECS-SCEEEEEEECCCCCCCSSCCCCCCCEEEEEEEEECCC--CCCCSCSCCCCCCCCCCEEEEEE
T ss_pred ECCccEE---EEEEEcC-CCcEEEEEEecccccCccccCCCCceeEEEEecCCCC--ccCCccccCCCCCCCCCcEEEEE
Confidence 7899988 7777776 6778777665432100 0000000111112100001 111210 01122222
Q ss_pred EEeeeeecCCcEEecCCCCCCCCCCCCCCCCC------CcEEEECCcccC----eEEecC-cEEEEEEEecCCCeeEEEE
Q 008071 240 VFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYF------GDAIIVNGKAWP----RMTVRR-RKYRFRIINASNARFYRFF 308 (579)
Q Consensus 240 l~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~------gd~~~VNG~~~P----~~~v~~-~~~RlRllNa~~~~~~~l~ 308 (579)
++ .+.. ...+... .+.. +..++|||+.+. .+.++. ++++|+|.|.+. ..++||
T Consensus 347 l~-----~~~~---~~~~~~~-------~~~~~~~~~~~~~~~iNG~~~~~~~~~~~~~~G~~v~w~l~N~~~-~~Hp~H 410 (481)
T 3zx1_A 347 MS-----EDHM---QMHGMMG-------KSEGELKIALASMFLINRKSYDLKRIDLSSKLGVVEDWIVINKSH-MDHPFH 410 (481)
T ss_dssp EE-----ECCS---TTTTGGG-------CCHHHHHHHHHTTEEETTBCCCTTCCCEEEETTCCEEEEEEECSS-SCEEEE
T ss_pred Ee-----ccch---hcccccc-------cccccccccccceeEECCEeCCCCCceEEeCCCCEEEEEEEcCCC-CceeEE
Confidence 21 1100 0000000 0000 124899999883 578877 899999999765 569999
Q ss_pred EcCCCeEEEEec--CCCccC--ccEEecEEEeCcceEEEEEEEcCCCCCcEEEE
Q 008071 309 FTNGLRFIHVAA--DSAYLG--RPVVTNETLLAPSEIADVVIDFSESKSDVAIL 358 (579)
Q Consensus 309 l~~g~~f~via~--DG~~l~--~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l 358 (579)
| ||+.|.|+.. ||.... ++...|++.|.|||++.|.++|+.++ .|.+
T Consensus 411 l-HG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~pG--~w~~ 461 (481)
T 3zx1_A 411 I-HGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKG--LRMY 461 (481)
T ss_dssp E-TTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCCSCE--EEEE
T ss_pred E-eccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcCCCe--eEEE
Confidence 9 8999999999 887652 35789999999999999999997664 4444
No 68
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=98.76 E-value=1.1e-07 Score=102.25 Aligned_cols=199 Identities=12% Similarity=0.070 Sum_probs=122.3
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEee--CC---CCCC-CCCCCCCCc-c--
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHL--HG---GIDE-PESDGNANS-W-- 165 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~--HG---~~~~-~~~DG~p~~-~-- 165 (579)
+||+. .|+|+|++| ++++|+.|..... ...+|+ +| .... -..||.+-. .
T Consensus 174 iNG~~-~p~~~v~~g-~~RlRliNa~~~~--------------------~~~~~i~~~~~~~~~~~via~DG~~~~~P~~ 231 (448)
T 3aw5_A 174 VNGVK-DAVFKLSGG-SYRLRLVNGSNAR--------------------LYMLSIVKKNGDVVPMRLIAVDQGFLARPIE 231 (448)
T ss_dssp ETTEE-TCEEEEEEE-EEEEEEEECSSSC--------------------CEEEEEEETTSCEECEEEEEETTEEEEEEEE
T ss_pred ECCcc-cceEEECCC-eEEEEEEcCCCcc--------------------eEEEEEEcCCCCCccEEEEEeCCCccCCceE
Confidence 35764 699999999 9999999997763 688999 87 2211 136887532 1
Q ss_pred ccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChh-hh--hh-----ccc-ceEEE--EEEcCCCC-CCCCC---CC
Q 008071 166 FTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLT-RI--NL-----LAG-LVGAY--IVRHHDVE-TPLRL---PS 230 (579)
Q Consensus 166 ~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t-~~--qv-----~~G-L~G~l--IV~dp~~~-~~~~l---p~ 230 (579)
+..-.+.||+++ +.-+.++ .+.||...+..... .. .+ ..+ -.... .+.+.... .+..| |.
T Consensus 232 ~~~l~l~pgeR~---dvlv~~~--~~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~lp~ 306 (448)
T 3aw5_A 232 VRALFLAPAERA---EVVVELG--EGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPP 306 (448)
T ss_dssp ESCEEECTTCEE---EEEEEEC--SEEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCCCCCCCSCCCC
T ss_pred eceEEECCcceE---EEEEECC--CCceEEEccccccccCccccccccccCCCCCceEEEEEEcCCCCCCCccccCCCCC
Confidence 222357899988 6666665 37889888754210 00 00 000 01111 12111100 00001 10
Q ss_pred C---CCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC----eEE-ecC-cEEEEEEEecCC
Q 008071 231 G---DEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP----RMT-VRR-RKYRFRIINASN 301 (579)
Q Consensus 231 ~---~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P----~~~-v~~-~~~RlRllNa~~ 301 (579)
. ...++.+.+. .....+.|||+.+. .+. ++. ++++|+|.|.+.
T Consensus 307 ~~~~~~~~~~~~l~----------------------------~~~~~~~iNg~~~~~~~p~~~~~~~g~~v~~~i~N~~~ 358 (448)
T 3aw5_A 307 EPPKPTRTRRFALS----------------------------LSGMQWTINGMFWNASNPLFEHVSVEGVELWEIVNDKA 358 (448)
T ss_dssp CCCCCSEEEEEEEE----------------------------EETTEEEETTBCCCTTCTTCCCEEECEEEEEEEEECSS
T ss_pred CCCCCCceEEEEEe----------------------------CCCceeeECCCcCCCCCCceeccCCCCeEEEEEEcCCC
Confidence 0 0000001000 00124789999873 355 665 899999999984
Q ss_pred CeeEEEEEcCCCeEEEEecCCCcc--------------CccEEecEEEeCcceEEEEEEEcC
Q 008071 302 ARFYRFFFTNGLRFIHVAADSAYL--------------GRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 302 ~~~~~l~l~~g~~f~via~DG~~l--------------~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
...++||| ||+.|+|++.+|... ..|..+|++.|.||+++.|+|+|.
T Consensus 359 ~~~HP~HL-HG~~F~Vl~~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~ 419 (448)
T 3aw5_A 359 SMPHPMHL-HGFPMWIIERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFD 419 (448)
T ss_dssp SCCEEEEE-SSSCBEEEEEESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEEC
T ss_pred CCCcCEEE-CCceEEEEEecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEec
Confidence 45699999 899999999999764 123578999999999999998886
No 69
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=98.73 E-value=7.9e-07 Score=98.07 Aligned_cols=224 Identities=15% Similarity=0.152 Sum_probs=146.5
Q ss_pred CCCCCCceeEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcc-cCeEEecC-cEEEEEEEecCCCeeEE
Q 008071 229 PSGDEFDRPLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKA-WPRMTVRR-RKYRFRIINASNARFYR 306 (579)
Q Consensus 229 p~~~~~e~~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~-~P~~~v~~-~~~RlRllNa~~~~~~~ 306 (579)
|.+..+++.|.++......+|. .-..++|||+. .|.|.++. +++++++.|.-......
T Consensus 63 p~~~~~~~~l~v~~~~~~pdG~--------------------~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~ts 122 (580)
T 3sqr_A 63 PTGVTREYWLSVENSTITPDGY--------------------TRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTS 122 (580)
T ss_dssp CCCCEEEEEEEEEEEEECSSSB--------------------CEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBC
T ss_pred CCceEEEEEEEEEEEEecCCCe--------------------EEEEEEECCccCCceEEEeCCCEEEEEEEECCCCCcce
Confidence 3333556777777655544442 13589999995 59999988 99999999998755678
Q ss_pred EEEcCCCeEE-EEecCCCccCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEecCCCCCCCCCCCCCCCCCccEEEEEe
Q 008071 307 FFFTNGLRFI-HVAADSAYLGRPVVTNETLLAPSEIADVVIDFSESKSDVAILANDAPYPYPSGDPVNDANGKVMKFIIK 385 (579)
Q Consensus 307 l~l~~g~~f~-via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~g~~~~~~~~~v~~~~v~ 385 (579)
||. ||.... --..||.+- +..-.|.||+.+.--+++++.+ +|+-.+....++..| -.-.+.|.
T Consensus 123 IHw-HGl~~~~t~~~DGvp~-----vTq~pI~PG~sftY~f~~~q~G--T~WYHsH~~~q~~~G--------L~G~lIV~ 186 (580)
T 3sqr_A 123 IHW-HGIRQLGSLEYDGVPG-----VTQCPIAPGDTLTYKFQVTQYG--TTWYHSHFSLQYGDG--------LFGPLIIN 186 (580)
T ss_dssp EEE-TTCCCTTCGGGSCCBT-----TTBCCBCTTCEEEEEEECCCCE--EEEEEECSTTGGGGT--------CEEEEEEE
T ss_pred EEe-cccccCCCccccCCCc-----cccCCCCCCCeEEEEEECCCCc--ceEEeecccccccCc--------CEEEEEee
Confidence 999 784332 135788753 1233589999999999988653 888877653322222 11123333
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCccce-EEEEEeeecC-------------CCCcceEEEcCeecCC-----------
Q 008071 386 KNHELDTWRVPEKLIKYPSPNPSSASRTR-YIAMYEYTSD-------------IDEPTHLFINGKSYEE----------- 440 (579)
Q Consensus 386 ~~~~~~~~~~P~~L~~~~~~~~~~~~~~r-~~~l~~~~~~-------------~g~~~~~~iNg~~~~~----------- 440 (579)
.... . + .+.+. .+.|.+.... ...+..++|||+...+
T Consensus 187 ~p~~-----~-----~--------yD~d~~~l~l~Dw~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~~~~ 248 (580)
T 3sqr_A 187 GPAT-----A-----D--------YDEDVGVIFLQDWAHESVFEIWDTARLGAPPALENTLMNGTNTFDCSASTDPNCVG 248 (580)
T ss_dssp CCCS-----S-----C--------CSEEEEEEEEEEECSSCHHHHHHHHTTSCCCCBSEEEETTBCCCCCTTCCCTTBCC
T ss_pred Cccc-----C-----C--------CCccceEEEEEEEecCCHHHHHHHHhccCCCCCceEEECCcccCCCcccccccccc
Confidence 2210 0 0 11122 2333322110 1123457899986521
Q ss_pred ---CcccccCCCCeEEEEEEeCCCC-CceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccc
Q 008071 441 ---PVTETPKAGTSEVWNVINLTED-NHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEH 516 (579)
Q Consensus 441 ---~~~~~~~~G~~~~w~l~N~~~~-~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~ 516 (579)
...+.++.|++++|+|+|.+.. .+.|||+||.|+|++.. |.. -
T Consensus 249 ~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa~D----------------------------G~~-----v 295 (580)
T 3sqr_A 249 GGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIAND----------------------------LVP-----I 295 (580)
T ss_dssp CCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEEEEET----------------------------TEE-----E
T ss_pred CCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEEEEeC----------------------------Ccc-----C
Confidence 2456788999999999999866 68999999999999873 321 1
Q ss_pred cCcccceEEeCCCcEEEEEEEEe
Q 008071 517 EKGWKNVYKMTPGYVTKILVRFS 539 (579)
Q Consensus 517 ~~~~kDTv~v~p~~~v~i~~rf~ 539 (579)
+|.-.|++.|.||+++.|+++++
T Consensus 296 ~P~~~~~l~i~pGqRydVlv~a~ 318 (580)
T 3sqr_A 296 VPYTTDTLLIGIGQRYDVIVEAN 318 (580)
T ss_dssp EEEEESSEEECTTCEEEEEEECC
T ss_pred CceEeeEEEEccceEEEEEEEeC
Confidence 34567999999999999999886
No 70
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.71 E-value=4.1e-08 Score=88.26 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=61.7
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCC-------------------CCCCCCC
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGID-------------------EPESDGN 161 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~-------------------~~~~DG~ 161 (579)
-+.|+|++||+|+++|+|.-... ++++++|+... .+. +.
T Consensus 34 p~~i~v~~G~~V~~~~~N~~~~~--------------------~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~--~~ 91 (139)
T 2aan_A 34 KTELTVSAGQTVTIRFKNNSAVQ--------------------QHNWILVKGGEAEAANIANAGLSAGPAANYLPA--DK 91 (139)
T ss_dssp CSEEEECTTCEEEEEEECCCSSC--------------------CBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCS--CC
T ss_pred CCeEEECCCCEEEEEEEeCCCCC--------------------CeeEEEeccccccchhhhhhhhcccccccccCc--cc
Confidence 46899999999999999974320 36667765321 111 11
Q ss_pred CCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 162 ANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 162 p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+..+.....+.||+++ ++.|.++ .+|+|+||||.++ |.. ||.|.|+|+
T Consensus 92 ~~~~~~t~~l~pGet~---~v~f~~~-~pG~y~f~C~~~~----H~~-GM~G~i~V~ 139 (139)
T 2aan_A 92 SNIIAESPLANGNETV---EVTFTAP-AAGTYLYICTVPG----HYP-LMQGKLVVN 139 (139)
T ss_dssp TTEEEECCCBCTTCEE---EEEEECC-SSEEEEEECCSTT----TTT-TSEEEEEEC
T ss_pred ccccccccccCCCCEE---EEEEECC-CCeEEEEEcCCCC----hHH-cCEEEEEEC
Confidence 1111222247899999 9999987 8999999999864 556 999999984
No 71
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=98.62 E-value=1.6e-06 Score=96.13 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=65.0
Q ss_pred EEEECCccc---CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCC------------------------cc
Q 008071 274 AIIVNGKAW---PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSA------------------------YL 325 (579)
Q Consensus 274 ~~~VNG~~~---P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~------------------------~l 325 (579)
.+.|||+.+ +.+.++. ++++|+|+|.+. ..++||| ||+.|.|++.+|. .+
T Consensus 460 ~~~iNG~~~~~~~~~~v~~G~~v~w~l~N~~~-~~HPiHl-Hg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 537 (612)
T 2g23_A 460 TYRRTAATFNDGLGFTIGEGTHEQWTFLNLSP-ILHPMHI-HLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPL 537 (612)
T ss_dssp EEEEEECSTTSCCCEEEETTCEEEEEEEECSS-SCEEEEE-SSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCC
T ss_pred EEEECCccCCCCCceEecCCCEEEEEEEeCCC-CCCCeEE-cCceEEEecccCcccccccccccCcccccccccccccCC
Confidence 588999987 4577877 899999999985 4699999 8999999987532 11
Q ss_pred --CccEEecEEEeCcceEEEEEEEcCCCCCcEEEEe
Q 008071 326 --GRPVVTNETLLAPSEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 326 --~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~ 359 (579)
.++...|++.|.|||++.|.++|+..+| .|.+.
T Consensus 538 ~~~e~~~kDTv~v~Pg~~~~i~~~~~~~pG-~w~~H 572 (612)
T 2g23_A 538 APNELGHKDVFQVPGPQGLRVMGKFDGAYG-RFMYH 572 (612)
T ss_dssp CTTSSSCBSEEEECSSEEEEEEEECCSCCE-EEEEE
T ss_pred CcccccccCeEEECCCcEEEEEEEeCCCCc-cEEEE
Confidence 1223689999999999999999994444 45443
No 72
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=98.61 E-value=4.5e-09 Score=107.39 Aligned_cols=94 Identities=14% Similarity=0.024 Sum_probs=58.0
Q ss_pred CCCCCCc--cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccC
Q 008071 95 HTATVPG--PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKE 172 (579)
Q Consensus 95 ~ng~~PG--PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~ 172 (579)
+||+..+ |.|++++|+++++++.|..... ..+++|+||.... .||...+ ...|.
T Consensus 206 ING~~~~~~p~l~v~~G~~vrlrliN~g~~~-------------------~~h~~hlhG~~~~--~dG~~~d---tv~l~ 261 (306)
T 1sdd_A 206 VNGYVNGTMPDITVCAHDHISWHLIGMSSGP-------------------ELFSIHFNGQVLE--QNHHKIS---AITLV 261 (306)
T ss_dssp SSSCCSSCCCCCCCCCC------BBCCCSSS-------------------CEECCBCSSTTCE--ETTEECS---CCCEE
T ss_pred eCCEecCCCcceEEcCCCEEEEEEEeCCCCC-------------------ccEEEEECCcEee--eCCEEcc---eEEEC
Confidence 3587764 8999999999999999986531 1578999996543 3775433 23578
Q ss_pred CCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 173 KGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 173 PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
||+++ ++.|.++ ++|+||||||.. .|..+||.|.|.|++.
T Consensus 262 pger~---~v~~~~~-~pG~~~~hch~~----~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 262 SATST---TANMTVS-PEGRWTIASLIP----RHFQAGMQAYIDIKNC 301 (306)
T ss_dssp TTCCB---C---------CCCCCBCCST----TTGGGTCBCCC-----
T ss_pred CCcEE---EEEEEcC-CCeEEEEEeCCh----HHHhcCCeEEEEEecC
Confidence 99999 9999998 799999999986 4778999999999843
No 73
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=98.60 E-value=9.8e-07 Score=95.42 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=66.7
Q ss_pred cEEEECCccc----CeEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccC--ccEEecEEEeCcceEEEEE
Q 008071 273 DAIIVNGKAW----PRMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLG--RPVVTNETLLAPSEIADVV 345 (579)
Q Consensus 273 d~~~VNG~~~----P~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~--~p~~~~~l~l~pgeR~dvl 345 (579)
+.++|||+.+ |.+.++. +++||+|.|.+....++||| ||+.|.|++.||...+ ++...|++.|. ||+..|+
T Consensus 378 ~~~~ING~~~~~~~~~~~~~~G~~e~w~l~N~~~~~~Hp~Hl-Hg~~F~Vl~~~g~~~~~~~~~~kDTV~v~-g~~~~i~ 455 (488)
T 3od3_A 378 HANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHI-HGTQFRILSENGKPPAAHRAGWKDTVKVE-GNVSEVL 455 (488)
T ss_dssp GCEEETTBCCCTTCCSEECCBSSCEEEEEECTTCCCCEEEEE-TTCCBEEEEBTTBCCCGGGSSSBSEEEES-SSEEEEE
T ss_pred ceeeECCeeCCCCCCceEcCCCCEEEEEEEeCCCCCCccEEE-cCceEEEeccCCCccccccCCceeEEEeC-CCEEEEE
Confidence 4589999987 3578877 89999999999766799999 8999999999998763 23468999999 9999999
Q ss_pred EEcCCCC
Q 008071 346 IDFSESK 352 (579)
Q Consensus 346 v~~~~~~ 352 (579)
|.|+..+
T Consensus 456 ~~f~~~~ 462 (488)
T 3od3_A 456 VKFNHDA 462 (488)
T ss_dssp ECBCSCC
T ss_pred EEeccCC
Confidence 9998754
No 74
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.60 E-value=5.9e-08 Score=81.51 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=60.1
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|++++| .|.+...|.||+|+..+ . . |- . ....+
T Consensus 17 P~~i~v~~G~~V~~--~n~~~~~H~~~~~~~~~-----p---------------~------------~~-~----~~~~~ 57 (98)
T 2plt_A 17 PKTLTIKSGETVNF--VNNAGFPHNIVFDEDAI-----P---------------S------------GV-N----ADAIS 57 (98)
T ss_dssp SSEEEECTTCEEEE--EECSSCCEEEEECGGGS-----C---------------T------------TC-C----HHHHC
T ss_pred CCEEEECCCCEEEE--EECCCCceEEEEeCCCC-----C---------------C------------cc-c----ccccc
Confidence 55678999999998 68777799999987421 0 0 10 0 00126
Q ss_pred cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 521 kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+|++.+.||++.++ +|. .|| |.|||| .|.+.||+..+.|
T Consensus 58 ~~~~~~~pG~~~~~--tf~--------------~~G~y~y~C~--~H~~~gM~G~i~V 97 (98)
T 2plt_A 58 RDDYLNAPGETYSV--KLT--------------AAGEYGYYCE--PHQGAGMVGKIIV 97 (98)
T ss_dssp EEEEECSTTCEEEE--ECC--------------SCEEEEEECG--GGGGGTCEEEEEE
T ss_pred ccceecCCCCEEEE--EeC--------------CCeEEEEEcC--CccccCCeEEEEE
Confidence 78999999998766 675 568 999999 7999999999987
No 75
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.57 E-value=6.1e-08 Score=82.70 Aligned_cols=85 Identities=22% Similarity=0.322 Sum_probs=60.9
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|++++|. |.+...|.||+|+..+.. .. |. . ...|
T Consensus 19 P~~i~v~~Gd~V~~~--n~~~~~H~~~~~~~~~~~--~~----------------------------g~--~----~~~~ 60 (106)
T 2gim_A 19 PAKLTIKPGDTVEFL--NNKVPPHNVVFDAALNPA--KS----------------------------AD--L----AKSL 60 (106)
T ss_dssp SSEEEECTTCEEEEE--ECSSSCCCBEECSSSSTT--CC----------------------------HH--H----HHHH
T ss_pred CCEEEECCCCEEEEE--ECCCCCceEEEeCCCCcc--cc----------------------------cc--c----chhc
Confidence 566788999999986 877779999998754311 00 10 0 0011
Q ss_pred -cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 521 -KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 521 -kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+|++.+.||++.++ .|.. .+.|| |.|||| .|.+.||+..+.|.
T Consensus 61 ~~~~~~~~pG~~~~~--~f~~-----------~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 61 SHKQLLMSPGQSTST--TFPA-----------DAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CBCSCCCSTTCEEEE--ECCT-----------TCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred cccceeeCCCCEEEE--EEec-----------CCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 47778899998766 6741 13788 999999 89999999999985
No 76
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.55 E-value=1e-07 Score=80.51 Aligned_cols=74 Identities=18% Similarity=0.058 Sum_probs=58.3
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-..|++++||+|++.|+|.-.. ++++...+.... ..+.||++.
T Consensus 27 P~~i~v~~G~tV~~~~~n~d~~---------------------~H~~~~~~~~~~-------------~~~~pg~~~--- 69 (100)
T 4hci_A 27 PNVITIPINESTTLLLKNKGKS---------------------EHTFTIKKLGID-------------VVVESGKEK--- 69 (100)
T ss_dssp SSEEEECTTSCEEEEEEECSSS---------------------CEEEEEGGGTEE-------------EEECTTCEE---
T ss_pred CCEEEECCCCEEEEEEEcCCCc---------------------eEEEEEecCCcc-------------eeecCCcce---
Confidence 3589999999999999997544 567666543221 136789988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.|+.+ .+|+|.|+|..| ...||.|.|||+
T Consensus 70 ~~~~t~~-~~G~Y~y~C~~H------~~~gM~G~i~Ve 100 (100)
T 4hci_A 70 NITVKPK-SAGTYELICRYH------LLKGMEGKVIVK 100 (100)
T ss_dssp EEEECCC-SCEEEEEECTTT------GGGTCEEEEEEC
T ss_pred eEEEecc-cCceEEEECccc------cCCCCEEEEEEC
Confidence 9999987 999999999865 447999999985
No 77
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.54 E-value=9.5e-08 Score=85.95 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=70.5
Q ss_pred ecCCCcccccCCCCeEEEEEEe--CCCCCceeeeeec--cEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccc
Q 008071 437 SYEEPVTETPKAGTSEVWNVIN--LTEDNHPLHIHLG--LFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512 (579)
Q Consensus 437 ~~~~~~~~~~~~G~~~~w~l~N--~~~~~HP~HlHg~--~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~ 512 (579)
.|+ |..+.++.|+++.|++.| .+.+.|.||++.. .|.-+ ....+.. ...+ +. .+
T Consensus 29 ~F~-P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~----------~~~~~~~-------~~~~---~~-~~ 86 (140)
T 1qhq_A 29 AFA-QTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAA----------VNTAAQN-------NADA---LF-VP 86 (140)
T ss_dssp SBS-CSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHH----------HHHHHHT-------CGGG---TT-CC
T ss_pred eEe-CCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhh----------hhhhhhh-------cccc---cc-cC
Confidence 443 567789999999999999 6678999999842 11100 0000000 0000 00 00
Q ss_pred cccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 513 ~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.......+++|..|.||++..+.+.|+ .|| |.|||++..|...||...+.|.
T Consensus 87 ~~~~~~~~~~t~~l~pG~~~~~~~~~~--------------~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 87 PPDTPNALAWTAMLNAGESGSVTFRTP--------------APGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp CTTCTTEEEECCCBCTTEEEEEEEECC--------------SSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred ccccccccccceeeCCCceeEEEEEeC--------------CCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 001123578999999999988866664 578 9999999999999999999885
No 78
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=98.53 E-value=3.4e-07 Score=93.05 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=68.9
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCCc-----cccccccCCC
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNANS-----WFTAGFKEKG 174 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~~-----~~t~~~i~PG 174 (579)
-|.|+++.||+|++++.|.... .+.+|+||-...- ..++.... ......+.||
T Consensus 189 ~p~l~v~~Ge~Vr~~liN~~~~---------------------~HpfHlHGh~F~v~~~g~~~~~~~~~~~~Dtv~v~PG 247 (299)
T 3t9w_A 189 APTFEANLGERVEWIAIGHGSN---------------------FHTFHLHGHRWLDNRTGMRTSEYDPSPLIDIKDLNPG 247 (299)
T ss_dssp CCEEEEETTCEEEEEEEEESSC---------------------CCEEEETTCCEESSSSSSCCSTTCCCCEESEEECCTT
T ss_pred cccceecCCCEEEEEEEecccc---------------------ceeeeEecceEEEEecccccCCcCCCCceeeEEeCCc
Confidence 5789999999999999998765 7899999975421 12222110 0111147899
Q ss_pred CcceeeeEEEeCCC--CCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 175 PTWTKKTYHYHNMQ--QPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 175 ~~~~~~~y~~~~~~--~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
+++ ++.+.+.+ .+|+|+||||.. .+..+||.|.|+|++++
T Consensus 248 e~~---~~~via~~~dnPG~w~~HCHi~----~H~~~GM~~~f~V~~~~ 289 (299)
T 3t9w_A 248 VSF---GFQVIAGEGVGPGMWMYHCHVQ----NHSDMGMAGMFLVRNAD 289 (299)
T ss_dssp CEE---EEEEETTTTTCSEEEEEEECSH----HHHHTTCEEEEEEECTT
T ss_pred eeE---EEEEEEeeCCCCeeEEEEcCCH----HHHhcCCeEEEEEECCC
Confidence 988 88876542 589999999985 57889999999999655
No 79
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.53 E-value=9.8e-08 Score=80.19 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=59.1
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|+++.|. |.+...|.||+|...+- + .....|
T Consensus 18 P~~i~v~~G~~V~~~--n~~~~~H~~~~~~~~~p------g---------------------------------~~~~~~ 56 (98)
T 1pcs_A 18 PSTVTIKAGEEVKWV--NNKLSPHNIVFDADGVP------A---------------------------------DTAAKL 56 (98)
T ss_dssp SSEEEECTTCEEEEE--ECSSCCEEEEECCSSSC------H---------------------------------HHHHHH
T ss_pred CCEEEECCCCEEEEE--ECCCCCcEEEEeCCCCC------c---------------------------------cccccc
Confidence 556789999999987 77667899999874221 0 000123
Q ss_pred -cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 521 -KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 521 -kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+|++.+.||++.++ +|. .|| |.|||| .|.+.||+..+.|
T Consensus 57 ~~~~~~~~pG~~~~~--tf~--------------~~G~y~~~C~--~H~~~gM~G~i~V 97 (98)
T 1pcs_A 57 SHKGLLFAAGESFTS--TFT--------------EPGTYTYYCE--PHRGAGMVGKVVV 97 (98)
T ss_dssp CEEEEECSTTCEEEE--ECC--------------SCEEEEEECG--GGTTTTCEEEEEE
T ss_pred cccccccCCCCEEEE--EcC--------------CCeEEEEEcC--CccccCCeEEEEE
Confidence 57889999998766 665 578 999999 7999999999987
No 80
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.53 E-value=1.1e-07 Score=79.84 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=56.9
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|++++||+|+ |+|.-.. ++++|+|+...+...|.. ..+.....+.||+++
T Consensus 17 P~~i~v~~G~~V~--~~n~~~~---------------------~H~~~~~~~~~p~~~~~~-~~~~~~~~~~pG~~~--- 69 (98)
T 2plt_A 17 PKTLTIKSGETVN--FVNNAGF---------------------PHNIVFDEDAIPSGVNAD-AISRDDYLNAPGETY--- 69 (98)
T ss_dssp SSEEEECTTCEEE--EEECSSC---------------------CEEEEECGGGSCTTCCHH-HHCEEEEECSTTCEE---
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------ceEEEEeCCCCCCccccc-cccccceecCCCCEE---
Confidence 3689999999865 5787544 799999986543322210 000112247899988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.|. .+|+|+|||+.| ..+||.|.|+|+
T Consensus 70 ~~tf~---~~G~y~y~C~~H------~~~gM~G~i~V~ 98 (98)
T 2plt_A 70 SVKLT---AAGEYGYYCEPH------QGAGMVGKIIVQ 98 (98)
T ss_dssp EEECC---SCEEEEEECGGG------GGGTCEEEEEEC
T ss_pred EEEeC---CCeEEEEEcCCc------cccCCeEEEEEC
Confidence 77764 789999999954 457999999984
No 81
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=98.52 E-value=4.4e-07 Score=92.89 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=70.9
Q ss_pred CccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCC-CCCCCCC-----ccccccccCC
Q 008071 100 PGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEP-ESDGNAN-----SWFTAGFKEK 173 (579)
Q Consensus 100 PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~-~~DG~p~-----~~~t~~~i~P 173 (579)
-.|.|.++.||+|++++.|.-.. .+.+|+||....- ..||... .+...-.+.|
T Consensus 172 ~~~~l~v~~Ge~vr~~liN~g~~---------------------~hpfHlHGh~F~v~~~~~~~~~~~~~~~~Dtv~l~P 230 (313)
T 3tas_A 172 TGPDFEATVGDRVEFVMITHGEY---------------------YHTFHLHGHRWADNRTGMLTGPDDPSQVIDNKICGP 230 (313)
T ss_dssp CCCCEEEETTCEEEEEEEEESSC---------------------CEEEEETTCCEESSTTSSCCSTTCCCCEESEEEECT
T ss_pred cccccccccCCEEEEEEeccccc---------------------ceeeeecCCeeEEEEECCccCCCCCCeeeeEEEeCC
Confidence 37889999999999999998654 7899999976421 2333321 0111124789
Q ss_pred CCcceeeeEEEeCCC--CCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 174 GPTWTKKTYHYHNMQ--QPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 174 G~~~~~~~y~~~~~~--~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
|+++ ++.+.+.. .+|+|.||||.. .+..+||.|.|+|++++
T Consensus 231 ger~---~v~v~a~~~~nPG~w~~HCHi~----~H~~~GM~~~f~V~~~d 273 (313)
T 3tas_A 231 ADSF---GFQVIAGEGVGAGAWMYHCHVQ----SHSDMGMVGLFLVKKPD 273 (313)
T ss_dssp TCEE---EEEEETTTTTCSEEEEEEECSH----HHHHTTCEEEEEEECTT
T ss_pred Ccce---EEEEEeccCCCCEeEEEEeCCh----HHHHCCCeEEEEEECCC
Confidence 9988 88887653 589999999985 57889999999999766
No 82
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=98.51 E-value=1.9e-06 Score=94.22 Aligned_cols=220 Identities=12% Similarity=0.030 Sum_probs=122.7
Q ss_pred CCCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCC-CCC-CCCCCCCC-cc--cccc
Q 008071 95 HTATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGG-IDE-PESDGNAN-SW--FTAG 169 (579)
Q Consensus 95 ~ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~-~~~-~~~DG~p~-~~--~t~~ 169 (579)
+||+. .|.|.|+.| ++|+|+.|..... ...+|++|. ... -..||.+- .. +..-
T Consensus 235 iNG~~-~p~~~v~~~-~~RlRliNa~~~~--------------------~~~~~i~~~~~~~via~DG~~~~~P~~~~~l 292 (513)
T 2wsd_A 235 VNGKV-WPYLEVEPR-KYRFRVINASNTR--------------------TYNLSLDNGGDFIQIGSDGGLLPRSVKLNSF 292 (513)
T ss_dssp ETTEE-SCEEECCSS-EEEEEEEECCSSC--------------------CEEEEETTCCCEEEEEETTEEEEEEEEESEE
T ss_pred ECCcc-cceEEecCC-EEEEEEEccCCcc--------------------eEEEEECCCCeEEEEccCCCcccCceEeCeE
Confidence 46764 689999885 9999999987653 578888876 221 23688531 11 2223
Q ss_pred ccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccc-eEEEEEEcCC---CCCCCCCCCCCC--CceeE--EEE
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGL-VGAYIVRHHD---VETPLRLPSGDE--FDRPL--VVF 241 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL-~G~lIV~dp~---~~~~~~lp~~~~--~e~~l--vl~ 241 (579)
.|.||+++ +.-+.+++.+|. ||.-.............. ...+-++... ......+|.... ....+ .-.
T Consensus 293 ~l~pgeR~---dvlv~~~~~~g~-~~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~ 368 (513)
T 2wsd_A 293 SLAPAERY---DIIIDFTAYEGE-SIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQN 368 (513)
T ss_dssp EECTTCEE---EEEEECGGGTTC-EEEEEECCCSSSSCCTTTTTEEEEEECCSCCSSCCCCCCCSBCSCCGGGCCCCEEE
T ss_pred EECCeeeE---EEEEECCCCCCc-EEEEEecccccccCCCCCCcceEEEEeccCcccCccCCCCccccCCCCcccCCCcc
Confidence 57899988 777777755676 332111100000000001 1222232111 001111222100 00000 001
Q ss_pred eeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC---eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEE
Q 008071 242 DRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP---RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIH 317 (579)
Q Consensus 242 D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P---~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~v 317 (579)
++.+.-+.. ....| ...++|||+.+. .+.++. ++++|.|.|.+.. .+.||| ||+.|+|
T Consensus 369 ~~~~~l~~~--~~~~g--------------~~~~~iNg~~~~~~~~~~~~~g~~~~w~l~N~~~~-~HP~Hl-HG~~F~V 430 (513)
T 2wsd_A 369 IRTLKLAGT--QDEYG--------------RPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRG-THPIHL-HLVSFRV 430 (513)
T ss_dssp EEEEEEEEE--ECTTS--------------CEEEEETTBCTTSCCCBCCBTTCEEEEEEEECSSS-CEEEEE-SSCCEEE
T ss_pred eEEEEEEee--cCCCC--------------CceEeECCccCCCcccEecCCCCEEEEEEEcCCCC-CcCEeE-eCceEEE
Confidence 111110000 00000 125679999873 345665 8999999998854 699999 8999999
Q ss_pred EecCCC---------------c-----cCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEe
Q 008071 318 VAADSA---------------Y-----LGRPVVTNETLLAPSEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 318 ia~DG~---------------~-----l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~ 359 (579)
++.+|. . ..++..+|++.|.||+.+.|++.|.+.+| .+.+.
T Consensus 431 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnpG-~w~~H 491 (513)
T 2wsd_A 431 LDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSG-RYVWH 491 (513)
T ss_dssp EEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCCE-EEEEE
T ss_pred EEecCcccccccccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCCC-CEEEE
Confidence 998752 1 01234789999999999999999965455 45443
No 83
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.51 E-value=4.2e-07 Score=81.69 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=61.2
Q ss_pred ccEEEEECCCEEEEEEEc--CCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCC------------C------CCCCCC
Q 008071 101 GPTIEALHGIDTYVTWQN--HLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGI------------D------EPESDG 160 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N--~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~------------~------~~~~DG 160 (579)
-+.|+|++||+|+++|+| .... +++++++... . -+.. +
T Consensus 32 P~~i~v~~G~tV~~~~~N~~~~~~---------------------~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 89 (140)
T 1qhq_A 32 QTSLSLPANTVVRLDFVNQNNLGV---------------------QHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP-D 89 (140)
T ss_dssp CSEEEEETTCEEEEEEEECCSSCC---------------------CBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT-T
T ss_pred CCeEEECCCCEEEEEEECCCCCCC---------------------ceeEEEeccCcchhhhhhhhhhhcccccccCcc-c
Confidence 368999999999999999 4433 5777776321 0 0000 1
Q ss_pred CCCccccccccCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 161 NANSWFTAGFKEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 161 ~p~~~~t~~~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.+..+.....+.||++. ++.|..+ .+|+|||||+..+ |...||.|.|+|.
T Consensus 90 ~~~~~~~t~~l~pG~~~---~~~~~~~-~~G~y~f~C~~~~----H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 90 TPNALAWTAMLNAGESG---SVTFRTP-APGTYLYICTFPG----HYLAGMKGTLTVT 139 (140)
T ss_dssp CTTEEEECCCBCTTEEE---EEEEECC-SSEEEEEECCSTT----TTTTTCEEEEEEE
T ss_pred cccccccceeeCCCcee---EEEEEeC-CCeeEEEEeCCcC----HhhcCCEEEEEEc
Confidence 11101111247899988 8899987 8999999999854 5668999999997
No 84
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.48 E-value=4.5e-07 Score=80.68 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=53.1
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-++|++++||+|+ |.|.-.. ++++++.... +|.. .+....+.||+++
T Consensus 59 P~~i~V~~GdtV~--~~N~d~~---------------------~H~v~~~~~~-----~g~~--~~~s~~l~pG~t~--- 105 (132)
T 3c75_A 59 TPEVTIKAGETVY--WVNGEVM---------------------PHNVAFKKGI-----VGED--AFRGEMMTKDQAY--- 105 (132)
T ss_dssp SSEEEECTTCEEE--EEECSSS---------------------CBCCEECTTT-----SSSS--CEECCCBCTTEEE---
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------ceEEEEeCCC-----CCcc--cccccccCCCCEE---
Confidence 3689999999976 4587544 5666665422 1221 1444457899988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+|.| + .+|+|+|||-.| .||.|.|+|+
T Consensus 106 ~~tF--~-~~G~y~y~C~~H--------~gM~G~I~V~ 132 (132)
T 3c75_A 106 AITF--N-EAGSYDYFCTPH--------PFMRGKVIVE 132 (132)
T ss_dssp EEEE--C-SCEEEEEECSSC--------TTCEEEEEEC
T ss_pred EEEc--C-CCEEEEEEeCCC--------cCCEEEEEEC
Confidence 8888 4 789999999886 2999999984
No 85
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=98.48 E-value=1.4e-06 Score=95.63 Aligned_cols=217 Identities=12% Similarity=0.078 Sum_probs=122.3
Q ss_pred CCCCCccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCC------CC--CCCCCCCC-Cc--
Q 008071 96 TATVPGPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGG------ID--EPESDGNA-NS-- 164 (579)
Q Consensus 96 ng~~PGPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~------~~--~~~~DG~p-~~-- 164 (579)
||+ +.|+|.|+.| ++|+||.|..... ...++++|. |. --..||.. ..
T Consensus 207 NG~-~~p~~~v~~~-~~RlRliNa~~~~--------------------~~~l~i~~~~~~~~~h~~~vIa~DG~~~~~P~ 264 (534)
T 3abg_A 207 NGQ-PWPFKNVEPR-KYRFRFLDAAVSR--------------------SFGLYFADTDAIDTRLPFKVIASDSGLLEHPA 264 (534)
T ss_dssp TTE-ESCBCBCCSS-EEEEEEEECCSSC--------------------CEEEEECCSSSTTCCCCEEEEEETTEEEEEEE
T ss_pred CCc-cCceEEecCc-EEEEEEEecCCcc--------------------eEEEEEecccCcCCCccEEEEEeCCCcccCce
Confidence 565 5789999985 9999999997763 567888761 21 11267752 11
Q ss_pred cccccccCCCCcceeeeEEEeCCCCCc-eeeeecCCCC---hhh-hhhcccceEEEEEEcCCCC---CCCCCCCCCCCce
Q 008071 165 WFTAGFKEKGPTWTKKTYHYHNMQQPG-NLWYHDHAMG---LTR-INLLAGLVGAYIVRHHDVE---TPLRLPSGDEFDR 236 (579)
Q Consensus 165 ~~t~~~i~PG~~~~~~~y~~~~~~~~G-t~wYH~H~~g---~t~-~qv~~GL~G~lIV~dp~~~---~~~~lp~~~~~e~ 236 (579)
.+..-.+.||+++ +.-+..++.+| +||....... ... .+ +....+.+-++..... ....+|.. -...
T Consensus 265 ~~~~l~l~pgeR~---dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~-~~~~~~il~~~~~~~~~~~~~~~~P~~-L~~~ 339 (534)
T 3abg_A 265 DTSLLYISMAERY---EVVFDFSDYAGKTIELRNLGGSIGGIGTDTD-YDNTDKVMRFVVADDTTQPDTSVVPAN-LRDV 339 (534)
T ss_dssp EESCEEECTTCEE---EEEEECSSCTTSEEEEECCCCSSSSCCSCSS-STTTSEEEEEECCCCSSCSCCCCCCCC-CCCC
T ss_pred EeceEEECCccEE---EEEEEcCCCCCceEEEEeccccccccccccC-cCCcceeEEEecCCCCcCCCCCCCccc-cccC
Confidence 1222357899988 77777776577 6887653311 000 00 0011122222211100 00011110 0000
Q ss_pred eEEEEeeeeecCCcEEecCCCCCCCCCCCCCCCCCCcEEEECCcccC------eEEecC-cEEEEEEEecCCCeeEEEEE
Q 008071 237 PLVVFDRSFRTDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWP------RMTVRR-RKYRFRIINASNARFYRFFF 309 (579)
Q Consensus 237 ~lvl~D~~~~~~g~~~~~~~g~~~~~~~~~~~~~~gd~~~VNG~~~P------~~~v~~-~~~RlRllNa~~~~~~~l~l 309 (579)
.. .+-.-..+-.+.+ +..+..++|||+.+. .+.++. ++++|.|.|.+....|+|||
T Consensus 340 ~~--p~~~~~~~~~~~~---------------~~~~~~w~iNG~~f~~~~~p~l~~v~~G~~~~w~i~N~~~~~~HP~HL 402 (534)
T 3abg_A 340 PF--PSPTTNTPRQFRF---------------GRTGPTWTINGVAFADVQNRLLANVPVGTVERWELINAGNGWTHPIHI 402 (534)
T ss_dssp SC--CCCCCCCCEEEEC---------------SCCCSTTCCCCBTTBCTTSCCCCEECTTCEEEEEEEECSSSCCCCEEE
T ss_pred CC--CCCccccceEEEE---------------eccCceeEECCcccCCCCCcceeeccCCCEEEEEEEcCCCCCCcCEEE
Confidence 00 0000000000000 001224678999873 245666 89999999998666799999
Q ss_pred cCCCeEEEEec-CCCc------cCccEEecEEEeCcceEEEEEEEcCCCCCcEEEEe
Q 008071 310 TNGLRFIHVAA-DSAY------LGRPVVTNETLLAPSEIADVVIDFSESKSDVAILA 359 (579)
Q Consensus 310 ~~g~~f~via~-DG~~------l~~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~ 359 (579)
||+.|+|++. +|.. .+. ..+|++.|.||+++.|.+.+.+.+| .+.+.
T Consensus 403 -HG~~F~Vl~~~~g~~~~~~~~~~~-~~rDTV~v~pg~~v~I~~~~adnpG-~w~~H 456 (534)
T 3abg_A 403 -HLVDFKVISRTSGNNARTVMPYES-GLKDVVWLGRRETVVVEAHYAPFPG-VYMFH 456 (534)
T ss_dssp -SSCCEEEEEESSCCSSSCCCSGGG-SCBSEECCCSSEEEEEEEECCSCCE-EEEEE
T ss_pred -CCeeEEEEEEcCCCCcCcCCcccc-CCcCeEEcCCCCEEEEEEEECCCCc-cEEEe
Confidence 8999999998 6641 112 4589999999999999998655555 45443
No 86
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=98.43 E-value=7.4e-08 Score=109.80 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=67.3
Q ss_pred CcEEEECCccc---CeEEecC-cEEEEEEEecCCC-eeEEEEEcCCCeEEEEecCCCccCccEEecEEEeCcceEEEEEE
Q 008071 272 GDAIIVNGKAW---PRMTVRR-RKYRFRIINASNA-RFYRFFFTNGLRFIHVAADSAYLGRPVVTNETLLAPSEIADVVI 346 (579)
Q Consensus 272 gd~~~VNG~~~---P~~~v~~-~~~RlRllNa~~~-~~~~l~l~~g~~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv 346 (579)
++.++|||+.+ +.+.++. ++|||||+|++.. ..+.||| |||.|.|++.||. .+|++.|.||||++|+|
T Consensus 354 ~~~~~ING~~~~~~~~l~v~~Ge~vr~rliN~g~~~~~H~fHl-hGh~f~Vv~~dg~------~~Dtv~l~Pg~~~~v~~ 426 (770)
T 2r7e_B 354 YRFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSNENIHSIHF-SGHVFTVRKKEEY------KMALYNLYPGVFETVEM 426 (770)
T ss_dssp SCEECTTSCTTTTCCCCCCCSSSCEEEECCCCCSSSCCCEEEB-SSCCEECCSSSCC------EESEEECCTTCCCEEEE
T ss_pred CCccccCCccCCCCCCeEEeCCCEEEEEEEeCCCCcceEEEEE-cCCEEEEEecCCc------eeeEEEECCCeEEEEEE
Confidence 35789999986 5688888 9999999999875 4799999 7999999999973 78999999999999999
Q ss_pred EcCCCCCcEEEEe
Q 008071 347 DFSESKSDVAILA 359 (579)
Q Consensus 347 ~~~~~~g~~~~l~ 359 (579)
++++++ .|.|.
T Consensus 427 ~ad~pG--~w~~h 437 (770)
T 2r7e_B 427 LPSKAG--IWRVE 437 (770)
T ss_dssp CCSSCB--CCCBC
T ss_pred EeCCCC--ceEEE
Confidence 998864 44443
No 87
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.43 E-value=4.2e-07 Score=79.68 Aligned_cols=77 Identities=9% Similarity=-0.087 Sum_probs=53.7
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-..|+|++||+|+ |.|.- . ++++..+....+ +|... + .+.||++|
T Consensus 21 P~~i~V~~GDTV~--f~n~~-~---------------------~Hnv~~~~~~~p---~g~~~--~---~~~pg~t~--- 65 (124)
T 3ef4_A 21 PGFVKVEAGDTVK--FVPTD-K---------------------SHNAESVREVWP---EGVAP--V---KGGFSKEV--- 65 (124)
T ss_dssp SSEEEECTTCEEE--EECSS-S---------------------SCCCEECTTTSC---TTSCC--C---BCCTTCCE---
T ss_pred CCEEEECCCCEEE--EEECC-C---------------------CccEEEeCCcCC---CCccc--c---ccCCCCEE---
Confidence 4689999999965 55542 2 577776643222 23211 2 24689988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
+|.| + .+|+|||||-.| ..+||.|.|+|.+|.
T Consensus 66 s~TF--~-~~G~y~Y~C~~H------~~~GM~G~I~V~~p~ 97 (124)
T 3ef4_A 66 VFNA--E-KEGLYVLKCAPH------YGMGMVVLVQVGKPV 97 (124)
T ss_dssp EEEC--C-SSEEEEEECTTT------GGGTCEEEEEESSCT
T ss_pred EEEe--C-CCeEEEEEcCCC------CcCCCEEEEEECCCC
Confidence 7777 4 789999999754 558999999999764
No 88
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.42 E-value=2.2e-07 Score=78.02 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=55.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCC-CCCCCCccccccccCCCCccee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPE-SDGNANSWFTAGFKEKGPTWTK 179 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~-~DG~p~~~~t~~~i~PG~~~~~ 179 (579)
-+.|++++||+|+ |.|.-.. ++++|+++...+.. .++.+ .....+.||+++
T Consensus 18 P~~i~v~~G~~V~--~~n~~~~---------------------~H~~~~~~~~~pg~~~~~~~---~~~~~~~pG~~~-- 69 (98)
T 1pcs_A 18 PSTVTIKAGEEVK--WVNNKLS---------------------PHNIVFDADGVPADTAAKLS---HKGLLFAAGESF-- 69 (98)
T ss_dssp SSEEEECTTCEEE--EEECSSC---------------------CEEEEECCSSSCHHHHHHHC---EEEEECSTTCEE--
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------CcEEEEeCCCCCcccccccc---ccccccCCCCEE--
Confidence 4689999999866 4576433 79999987543310 00000 122247899988
Q ss_pred eeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 180 KTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 180 ~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.| + .+|+|+|||+.| ..+||.|.|+|+
T Consensus 70 -~~tf--~-~~G~y~~~C~~H------~~~gM~G~i~V~ 98 (98)
T 1pcs_A 70 -TSTF--T-EPGTYTYYCEPH------RGAGMVGKVVVE 98 (98)
T ss_dssp -EEEC--C-SCEEEEEECGGG------TTTTCEEEEEEC
T ss_pred -EEEc--C-CCeEEEEEcCCc------cccCCeEEEEEC
Confidence 7777 4 789999999954 457999999984
No 89
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.42 E-value=6.2e-07 Score=73.96 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=53.5
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|++++||+|+ |.|.-.. +++++.++... . + .....+.||+++
T Consensus 18 P~~i~v~~Gd~V~--~~n~~~~---------------------~H~v~~~~~~~--~--~-----~~~~~~~~g~~~--- 62 (91)
T 1bxv_A 18 PSTIEIQAGDTVQ--WVNNKLA---------------------PHNVVVEGQPE--L--S-----HKDLAFSPGETF--- 62 (91)
T ss_dssp SSEEEECTTCEEE--EEECSSC---------------------CEEEEETTCGG--G--C-----EEEEECSTTCEE---
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------CcEEEEeCCCc--c--C-----cccceeCCCCEE---
Confidence 4689999999976 4575433 79999887210 0 0 122247899988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.| + .+|+|||||+.| ..+||.|.|+|+
T Consensus 63 ~~~f--~-~~G~y~~~C~~H------~~~gM~g~i~V~ 91 (91)
T 1bxv_A 63 EATF--S-EPGTYTYYCEPH------RGAGMVGKIVVQ 91 (91)
T ss_dssp EEEC--C-SCEEEEEECTTT------GGGTCEEEEEEC
T ss_pred EEEe--C-CCEEEEEEeCCC------ccCCCEEEEEEC
Confidence 7776 4 799999999965 346999999984
No 90
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.36 E-value=4.3e-07 Score=76.05 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=53.5
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|++++||+| +|.|.-.. ++++++++...+ +|.+.-......+.||+++
T Consensus 18 P~~i~v~~G~~V--~~~n~~~~---------------------~H~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~--- 68 (97)
T 1b3i_A 18 PKALSISAGDTV--EFVMNKVG---------------------PHNVIFDKVPAG---ESAPALSNTKLAIAPGSFY--- 68 (97)
T ss_dssp SSEEEECTTCEE--EEEECSSC---------------------CCCBEEEECCTT---SCHHHHCBCCCCCSCSCCE---
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------CeEEEEeCCCCc---cccccccccceecCCCCEE---
Confidence 358999999985 56676433 577777654332 1211000112247899988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.| + .+|+|+|||+.| ..+||.|.|+|+
T Consensus 69 ~~tf--~-~~G~y~y~C~~H------~~~gM~G~i~V~ 97 (97)
T 1b3i_A 69 SVTL--G-TPGTYSFYCTPH------RGAGMVGTITVE 97 (97)
T ss_dssp EEEC--C-SCSEEEEECSST------TTTTCEEEEEEC
T ss_pred EEEe--C-CCeEEEEEccCh------hhcCCEEEEEEC
Confidence 7777 4 899999999965 347999999984
No 91
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.35 E-value=8.2e-07 Score=78.27 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=52.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|+|++||+|++.++|. ++++..+....+ +|... +. +.||++|
T Consensus 22 P~~i~V~~GDtVtf~n~~~------------------------~H~v~~~~~~~P---~g~~~--f~---s~pGet~--- 66 (127)
T 3tu6_A 22 PAVIRAQPGDTVTFVAKDK------------------------GHNSALMKGGAP---EGAET--WK---GKINEEI--- 66 (127)
T ss_dssp SSEEEECTTCEEEEECSSS------------------------SCCCEECTTCSC---TTCCC--CB---CCTTCCC---
T ss_pred CCEEEECCCCEEEEEECCC------------------------CceEEEccCcCC---CCccc--ee---cCCCCEE---
Confidence 4699999999976655542 344444432211 22211 22 4689988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcCC
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHHD 221 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp~ 221 (579)
+|.| + .+|+|||||-.| ..+||.|.|+|.++.
T Consensus 67 s~TF--~-~pG~y~y~C~~H------~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 67 TVTL--S-KPGVYMYQCAPH------VGMGMIGAIVVGEPA 98 (127)
T ss_dssp EEEC--C-SCEEEEEECTTT------GGGTCEEEEEESSCT
T ss_pred EEEe--C-CCeEEEEEeCCC------CcCCcEEEEEECcCC
Confidence 8877 4 789999999965 458999999999754
No 92
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.34 E-value=1e-06 Score=77.25 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=52.4
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-..|+|++||+|++.++| . ++++..+....+ +|... +. +.||++|
T Consensus 20 P~~i~V~~GdtV~f~~~~---~---------------------~H~v~~~~~~~P---~g~~~--f~---~~pg~t~--- 64 (123)
T 3erx_A 20 PAFVRAEPGDVINFVPTD---K---------------------SHNVEAIKEILP---EGVES--FK---SKINESY--- 64 (123)
T ss_dssp SSEEEECTTEEEEEEESS---T---------------------TCCCEECTTSSC---TTCCC--CB---CCTTCCE---
T ss_pred CCEEEECCCCEEEEEECC---C---------------------CceEEEcCCcCC---CCccc--ee---cCCCCEE---
Confidence 358999999998777776 2 344444432111 23211 22 4689988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
+|.| + .+|+|||||-.| ..+||.|.|+|.+
T Consensus 65 s~TF--~-~pG~y~y~C~~H------~~~GM~G~I~V~~ 94 (123)
T 3erx_A 65 TLTV--T-EPGLYGVKCTPH------FGMGMVGLVQVGD 94 (123)
T ss_dssp EEEE--C-SCEEEEEECGGG------TTTTCEEEEEESS
T ss_pred EEEe--C-CCeEEEEEeCCC------CcCCcEEEEEECC
Confidence 8888 4 789999999964 4589999999996
No 93
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.34 E-value=9.6e-07 Score=74.60 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=52.6
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCC-------CCCCccccccccCC
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESD-------GNANSWFTAGFKEK 173 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~D-------G~p~~~~t~~~i~P 173 (579)
-++|++++||+|+ |.|.-.. +++++++. +...+ ..++-......+.|
T Consensus 16 P~~i~v~~G~tV~--~~n~~~~---------------------~H~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p 69 (102)
T 1kdj_A 16 PDSITVSAGEAVE--FTLVGET---------------------GHNIVFDI---PAGAPGTVASELKAASMDENDLLSED 69 (102)
T ss_dssp SSEEEECTTCCEE--EEECSSS---------------------CBCCEECC---CTTCCHHHHHHHHHTSCCTTCCBBTT
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------CeEEEEeC---cccccccccchhhcccccccceecCC
Confidence 4689999999976 5676433 57777763 11110 00110012224789
Q ss_pred CCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 174 GPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 174 G~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
|+++ ++.| + .+|+|+|||+.| ..+||.|.|+|+
T Consensus 70 G~~~---~~tf--~-~~G~y~y~C~~H------~~~gM~G~i~V~ 102 (102)
T 1kdj_A 70 EPSF---KAKV--S-TPGTYTFYCTPH------KSANMKGTLTVK 102 (102)
T ss_dssp BCEE---EECC--C-SCEEEEEECSTT------GGGTCEEEEEEC
T ss_pred CCEE---EEEe--C-CCeEEEEEeCCC------cccCCeEEEEEC
Confidence 9988 7777 4 899999999954 457999999984
No 94
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.33 E-value=4.5e-07 Score=75.92 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=58.3
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|+++.|. |.+...|.|+++...+. . |. ..|
T Consensus 18 P~~i~v~~G~~V~~~--n~~~~~H~~~~~~~~~~--------------------~------------~~--------~~~ 55 (97)
T 1b3i_A 18 PKALSISAGDTVEFV--MNKVGPHNVIFDKVPAG--------------------E------------SA--------PAL 55 (97)
T ss_dssp SSEEEECTTCEEEEE--ECSSCCCCBEEEECCTT--------------------S------------CH--------HHH
T ss_pred CCEEEECCCCEEEEE--ECCCCCeEEEEeCCCCc--------------------c------------cc--------ccc
Confidence 556789999999887 77667899999875430 0 10 012
Q ss_pred -cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 521 -KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 521 -kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+++..+.||++.++ .|. .|| |.|||+ .|.++||+..+.|
T Consensus 56 ~~~~~~~~~g~~~~~--tf~--------------~~G~y~y~C~--~H~~~gM~G~i~V 96 (97)
T 1b3i_A 56 SNTKLAIAPGSFYSV--TLG--------------TPGTYSFYCT--PHRGAGMVGTITV 96 (97)
T ss_dssp CBCCCCCSCSCCEEE--ECC--------------SCSEEEEECS--STTTTTCEEEEEE
T ss_pred cccceecCCCCEEEE--EeC--------------CCeEEEEEcc--ChhhcCCEEEEEE
Confidence 46778899998766 665 578 999999 8999999999887
No 95
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.30 E-value=1.2e-06 Score=72.30 Aligned_cols=72 Identities=26% Similarity=0.405 Sum_probs=55.8
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|+++.|. |.+...|.+|+|+. . . ..
T Consensus 18 P~~i~v~~Gd~V~~~--n~~~~~H~v~~~~~-------~----------------------------~----------~~ 50 (91)
T 1bxv_A 18 PSTIEIQAGDTVQWV--NNKLAPHNVVVEGQ-------P----------------------------E----------LS 50 (91)
T ss_dssp SSEEEECTTCEEEEE--ECSSCCEEEEETTC-------G----------------------------G----------GC
T ss_pred CCEEEECCCCEEEEE--ECCCCCcEEEEeCC-------C----------------------------c----------cC
Confidence 566789999999986 76667899998761 0 0 12
Q ss_pred cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 521 kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.++..+.||++.++ .|. .|| |.|||| .|.+.||...+.|
T Consensus 51 ~~~~~~~~g~~~~~--~f~--------------~~G~y~~~C~--~H~~~gM~g~i~V 90 (91)
T 1bxv_A 51 HKDLAFSPGETFEA--TFS--------------EPGTYTYYCE--PHRGAGMVGKIVV 90 (91)
T ss_dssp EEEEECSTTCEEEE--ECC--------------SCEEEEEECT--TTGGGTCEEEEEE
T ss_pred cccceeCCCCEEEE--EeC--------------CCEEEEEEeC--CCccCCCEEEEEE
Confidence 46678899987765 665 578 999999 8999999999887
No 96
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.27 E-value=9.1e-07 Score=74.32 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=58.9
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|+++.| .|.+...|.||++...|. . +++. . .....
T Consensus 16 P~~i~v~~G~tV~~--~n~~~~~H~~~~~~~~~p----~------g~~~------------------~-------~~~~~ 58 (99)
T 1byp_A 16 PSDLSIASGEKITF--KNNAGFPHNDLFDKKEVP----A------GVDV------------------T-------KISMP 58 (99)
T ss_dssp SSEEEECTTEEEEE--EECSSCCBCCEECTTSSC----T------TCCH------------------H-------HHSCC
T ss_pred CCEEEECCCCEEEE--EECCCCcceEEEeCCCCc----c------cccc------------------c-------ccccc
Confidence 55668899999988 687777999999874330 0 0000 0 00113
Q ss_pred cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 521 kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
+|++.+.||++.++ .|+ .|| |.|||+ .|.+.||+..+.|
T Consensus 59 ~~~~~~~~G~~~~~--~f~--------------~~G~y~~~C~--~H~~~gM~G~i~V 98 (99)
T 1byp_A 59 EEDLLNAPGEEYSV--TLT--------------EKGTYKFYCA--PHAGAGMVGKVTV 98 (99)
T ss_dssp TTCCBCSTTCEEEE--EEC--------------SCEEEEEECG--GGTTTTCEEEEEE
T ss_pred ccceeeCCCCEEEE--EeC--------------CCcEEEEEcC--CccccCCEEEEEE
Confidence 56778899998766 776 568 999999 8999999999887
No 97
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.23 E-value=4.1e-06 Score=70.26 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=54.6
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCC----ccccccccCCCCc
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNAN----SWFTAGFKEKGPT 176 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~----~~~t~~~i~PG~~ 176 (579)
-+.|++++||+| +|+|.-.. ++++|+++...+. |... .......+.||++
T Consensus 16 P~~i~v~~G~tV--~~~n~~~~---------------------~H~~~~~~~~~p~---g~~~~~~~~~~~~~~~~~G~~ 69 (99)
T 1byp_A 16 PSDLSIASGEKI--TFKNNAGF---------------------PHNDLFDKKEVPA---GVDVTKISMPEEDLLNAPGEE 69 (99)
T ss_dssp SSEEEECTTEEE--EEEECSSC---------------------CBCCEECTTSSCT---TCCHHHHSCCTTCCBCSTTCE
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------cceEEEeCCCCcc---ccccccccccccceeeCCCCE
Confidence 358999999985 56787543 6888888754322 2110 0001113689998
Q ss_pred ceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 177 WTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 177 ~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+ ++.|. .+|+|+|||+.| ..+||.|.|+|+
T Consensus 70 ~---~~~f~---~~G~y~~~C~~H------~~~gM~G~i~V~ 99 (99)
T 1byp_A 70 Y---SVTLT---EKGTYKFYCAPH------AGAGMVGKVTVN 99 (99)
T ss_dssp E---EEEEC---SCEEEEEECGGG------TTTTCEEEEEEC
T ss_pred E---EEEeC---CCcEEEEEcCCc------cccCCEEEEEEC
Confidence 8 77774 789999999954 447999999984
No 98
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.21 E-value=4.7e-06 Score=69.90 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=53.6
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCC---cc-ccccccCCCCc
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNAN---SW-FTAGFKEKGPT 176 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~---~~-~t~~~i~PG~~ 176 (579)
-+.|++++||+| +|+|.-.. ++++++++...+. |... .+ .....+.||++
T Consensus 16 P~~i~v~~G~tV--~~~n~~~~---------------------~H~v~~~~~~~p~---~~~~~~~~~~~~~~~~~~G~~ 69 (99)
T 1plc_A 16 PSEFSISPGEKI--VFKNNAGF---------------------PHNIVFDEDSIPS---GVDASKISMSEEDLLNAKGET 69 (99)
T ss_dssp SSEEEECTTCEE--EEEECSSC---------------------CBCCEECTTSSCT---TCCHHHHCCCTTCCBCSTTCE
T ss_pred CCEEEECCCCEE--EEEECCCC---------------------ceEEEEeCCCCcc---cccccccccccCccccCCCCE
Confidence 468999999976 45787543 6788877643321 2110 00 01113689998
Q ss_pred ceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 177 WTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 177 ~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+ ++.| + .+|+|+|||+.| ..+||.|.|+|+
T Consensus 70 ~---~~tf--~-~~G~y~~~C~~H------~~~gM~G~i~V~ 99 (99)
T 1plc_A 70 F---EVAL--S-NKGEYSFYCSPH------QGAGMVGKVTVN 99 (99)
T ss_dssp E---EEEC--C-SCEEEEEECGGG------TTTTCEEEEEEC
T ss_pred E---EEEE--C-CCceEEEEcCCC------cccCCEEEEEEC
Confidence 8 7766 4 799999999954 447999999984
No 99
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.07 E-value=3.7e-06 Score=70.94 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=58.3
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|..+.++.|++++|. |.+...|.|+++.-.. . + ..|... ...+.|
T Consensus 16 P~~i~v~~G~tV~~~--n~~~~~H~~~~~~~~~-------~-~-~~~~~~------------------------~~~~~~ 60 (102)
T 1kdj_A 16 PDSITVSAGEAVEFT--LVGETGHNIVFDIPAG-------A-P-GTVASE------------------------LKAASM 60 (102)
T ss_dssp SSEEEECTTCCEEEE--ECSSSCBCCEECCCTT-------C-C-HHHHHH------------------------HHHTSC
T ss_pred CCEEEECCCCEEEEE--ECCCCCeEEEEeCccc-------c-c-ccccch------------------------hhcccc
Confidence 566789999999986 7776789999873100 0 0 001100 001234
Q ss_pred -cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 521 -KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 521 -kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.+++.+.||++.++ .|. .|| |.|||+ .|.+.||...+.|
T Consensus 61 ~~~~~~~~pG~~~~~--tf~--------------~~G~y~y~C~--~H~~~gM~G~i~V 101 (102)
T 1kdj_A 61 DENDLLSEDEPSFKA--KVS--------------TPGTYTFYCT--PHKSANMKGTLTV 101 (102)
T ss_dssp CTTCCBBTTBCEEEE--CCC--------------SCEEEEEECS--TTGGGTCEEEEEE
T ss_pred cccceecCCCCEEEE--EeC--------------CCeEEEEEeC--CCcccCCeEEEEE
Confidence 47788899997766 664 578 999999 9999999999987
No 100
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.07 E-value=1.4e-05 Score=66.99 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=53.7
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCc--cccccccCCCCcce
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANS--WFTAGFKEKGPTWT 178 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~--~~t~~~i~PG~~~~ 178 (579)
-+.|++++||+|+ |.|.-.. ++++.+.....+. |.... ......+.||+++
T Consensus 17 P~~i~v~~GdtV~--~~n~~~~---------------------~H~v~~~~~~~p~---g~~~~~~~~~~~~~~~g~~~- 69 (98)
T 1iuz_A 17 PSKISVAAGEAIE--FVNNAGF---------------------PHNIVFDEDAVPA---GVDADAISYDDYLNSKGETV- 69 (98)
T ss_dssp SSEEEECTTCEEE--EEECSSC---------------------CEEEEECTTSSCT---TCCHHHHCEEEEECSTTCEE-
T ss_pred CCEEEECCCCEEE--EEECCCC---------------------CEEEEEeCCCCcc---ccccccccccccccCCCCEE-
Confidence 4689999999855 5676433 6888877632221 21100 0111247899988
Q ss_pred eeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 179 KKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 179 ~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.| + .+|+|+|+|-.| ..+||.|.|+|+
T Consensus 70 --~~tf--~-~~G~y~y~C~~H------~~~gM~G~I~V~ 98 (98)
T 1iuz_A 70 --VRKL--S-TPGVYGVYCEPH------AGAGMKMTITVQ 98 (98)
T ss_dssp --EEEC--C-SCEEEEEECTTT------GGGTCEEEEEEC
T ss_pred --EEEc--C-CCEEEEEEchhh------ccCCCEEEEEEC
Confidence 7777 4 899999999875 346999999984
No 101
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.99 E-value=1.6e-05 Score=68.24 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG 519 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~ 519 (579)
.|..+.++.|+.++|.+.|.+...|-|++... |
T Consensus 36 ~p~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~------------------------------------~----------- 68 (112)
T 1iby_A 36 EPETLVVKKGDAVKVVVENKSPISEGFSIDAF------------------------------------G----------- 68 (112)
T ss_dssp ESCEEEEETTCEEEEEEEECSSSCEEEEEGGG------------------------------------T-----------
T ss_pred cCCEEEEeCCCEEEEEEEECCCCeEEEEEcCC------------------------------------C-----------
Confidence 35667899999999999999755444433210 1
Q ss_pred ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 520 WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 520 ~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
-+..+.||++.++ .|. +++|| |.||||+..|... |...+.|.+
T Consensus 69 --~~~~i~pG~~~~~--~f~------------~~~~G~y~~~C~~~~~~~~-M~g~i~V~~ 112 (112)
T 1iby_A 69 --VQEVIKAGETKTI--SFT------------ADKAGAFTIWCQLHPKNIH-LPGTLNVVE 112 (112)
T ss_dssp --EEEEECTTCEEEE--EEE------------CCSCEEEEEBCSSSCTTTB-CCEEEEEEC
T ss_pred --ceeEeCCCCEEEE--EEE------------CCCCEEEEEECCCCCchHH-CEEEEEEeC
Confidence 1457889998777 554 23788 9999999888665 888888853
No 102
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.96 E-value=1.7e-05 Score=66.63 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=57.4
Q ss_pred EcCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccc
Q 008071 433 INGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLE 512 (579)
Q Consensus 433 iNg~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~ 512 (579)
+++..|. |..+.++.|+.+.|.+.|.+...|.|.+.+..+
T Consensus 20 ~~~~~F~-P~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~--------------------------------------- 59 (100)
T 4hci_A 20 LNDDYFN-PNVITIPINESTTLLLKNKGKSEHTFTIKKLGI--------------------------------------- 59 (100)
T ss_dssp EETTEEE-SSEEEECTTSCEEEEEEECSSSCEEEEEGGGTE---------------------------------------
T ss_pred EECCEEe-CCEEEECCCCEEEEEEEcCCCceEEEEEecCCc---------------------------------------
Confidence 3343453 666789999999999999987777776543211
Q ss_pred cccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 513 VSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 513 ~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
...+.||+..++.+.|+ .|| |.|+|. .|...||.+.+.|
T Consensus 60 ----------~~~~~pg~~~~~~~t~~--------------~~G~Y~y~C~--~H~~~gM~G~i~V 99 (100)
T 4hci_A 60 ----------DVVVESGKEKNITVKPK--------------SAGTYELICR--YHLLKGMEGKVIV 99 (100)
T ss_dssp ----------EEEECTTCEEEEEECCC--------------SCEEEEEECT--TTGGGTCEEEEEE
T ss_pred ----------ceeecCCcceeEEEecc--------------cCceEEEECc--cccCCCCEEEEEE
Confidence 12456788777755554 678 999997 5999999998876
No 103
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=97.96 E-value=2.1e-05 Score=68.86 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=30.5
Q ss_pred cCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 171 KEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 171 i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
..||+++ +|.| + .+|+|||+|..| ..+||.|.|+|.++
T Consensus 58 ~~pG~t~---~~tF--~-~~G~y~y~C~~H------~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 58 SKINENY---VLTV--T-QPGAYLVKCTPH------YAMGMIALIAVGDS 95 (123)
T ss_dssp CCTTCCE---EEEC--C-SCEEEEEECTTT------GGGTCEEEEEESSS
T ss_pred cCCCCEE---EEEe--C-CCEEEEEEeCCc------ccCCCEEEEEEcCC
Confidence 3589888 7777 4 789999999864 44799999999963
No 104
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=97.94 E-value=0.00056 Score=76.12 Aligned_cols=83 Identities=8% Similarity=0.046 Sum_probs=63.9
Q ss_pred cEEEECCcccC---eEEecC-cEEEEEEEecCCCeeEEEEEcCCCeEEEEecCCCccC----------------------
Q 008071 273 DAIIVNGKAWP---RMTVRR-RKYRFRIINASNARFYRFFFTNGLRFIHVAADSAYLG---------------------- 326 (579)
Q Consensus 273 d~~~VNG~~~P---~~~v~~-~~~RlRllNa~~~~~~~l~l~~g~~f~via~DG~~l~---------------------- 326 (579)
..+.+||+.+. .+.++. ++++|.|.|.+.. .+.||| ||+.|+|++.+|....
T Consensus 459 ~~~~~n~~~~~~~~~~~~~~g~~~~w~i~N~~~~-~HP~HL-HG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (612)
T 3gyr_A 459 KTYRRTARTFNDGLGFTIGEGTHEQWTFLNLSPI-LHPMHI-HLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVP 536 (612)
T ss_dssp EEEEEEECSTTSCCCEEEETTCEEEEEEEECSSS-CEEEEE-SSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECC
T ss_pred ccccccCccCCCCcceEeCCCCEEEEEEEcCCCC-CcCEeE-CCCcEEEEeecCCcCccccccccccccccccccccccC
Confidence 46778888764 366666 8999999999875 599999 9999999987654221
Q ss_pred ----ccEEecEEEeCcceEEEEEEEcCCCCCcEEEE
Q 008071 327 ----RPVVTNETLLAPSEIADVVIDFSESKSDVAIL 358 (579)
Q Consensus 327 ----~p~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l 358 (579)
++-.+|++.|.||+.+.|.++|.+.+| .+.+
T Consensus 537 ~~~~~~~~kDTv~v~~~~~v~i~~rfadnpG-~w~~ 571 (612)
T 3gyr_A 537 LAPNELGHKDVFQVPGPQGLRVMGKFDGAYG-RFMY 571 (612)
T ss_dssp CCTTCSSCBSEEEECSSEEEEEEEECCSCCE-EEEE
T ss_pred cccccCCCCcEEEECCCCEEEEEEEeCCCCc-ceEE
Confidence 223479999999999999999877665 4444
No 105
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=97.93 E-value=1.2e-05 Score=67.43 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=57.7
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCccccccccc-C
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHE-K 518 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~-~ 518 (579)
.|..+.++.|+++.| .|.+...|.|+++...+. . |. .... .
T Consensus 15 ~P~~i~v~~G~tV~~--~n~~~~~H~v~~~~~~~p-----~---------------------------~~----~~~~~~ 56 (99)
T 1plc_A 15 VPSEFSISPGEKIVF--KNNAGFPHNIVFDEDSIP-----S---------------------------GV----DASKIS 56 (99)
T ss_dssp ESSEEEECTTCEEEE--EECSSCCBCCEECTTSSC-----T---------------------------TC----CHHHHC
T ss_pred eCCEEEECCCCEEEE--EECCCCceEEEEeCCCCc-----c---------------------------cc----cccccc
Confidence 366678999999988 687777999998864220 0 00 0000 0
Q ss_pred cccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 519 GWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 519 ~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
..++.+.+.||++.++ .|+ .|| |.|||+ .|.+.||...+.|
T Consensus 57 ~~~~~~~~~~G~~~~~--tf~--------------~~G~y~~~C~--~H~~~gM~G~i~V 98 (99)
T 1plc_A 57 MSEEDLLNAKGETFEV--ALS--------------NKGEYSFYCS--PHQGAGMVGKVTV 98 (99)
T ss_dssp CCTTCCBCSTTCEEEE--ECC--------------SCEEEEEECG--GGTTTTCEEEEEE
T ss_pred cccCccccCCCCEEEE--EEC--------------CCceEEEEcC--CCcccCCEEEEEE
Confidence 1245567889997766 675 578 999999 7999999999887
No 106
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.89 E-value=3.6e-05 Score=65.47 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=50.6
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeee
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKT 181 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~ 181 (579)
..|+|++||+|+ |.|.-.. ++++.+..... |. ..+....+.||+++ +
T Consensus 34 ~~i~V~~G~tV~--~~N~d~~---------------------~H~v~~~~~~~-----~~--~~~~s~~l~~g~~~---~ 80 (106)
T 1id2_A 34 PEVTIKAGETVY--WVNGEVM---------------------PHNVAFKKGIV-----GE--DAFRGEMMTKDQAY---A 80 (106)
T ss_dssp SEEEECTTCEEE--EEECSSS---------------------CBCCEECTTTS-----SS--SCEECCCBCTTEEE---E
T ss_pred CEEEECCCCEEE--EEECCCC---------------------cEEEEEeCCCC-----Cc--ccccccccCCCCEE---E
Confidence 589999999975 5576443 45555543221 11 11333347899988 7
Q ss_pred EEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 182 YHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 182 y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
+.| + .+|+|+|+|-.| .||.|.|+|+
T Consensus 81 ~tf--~-~~G~y~~~C~~H--------~~M~G~I~V~ 106 (106)
T 1id2_A 81 ITF--N-EAGSYDYFCTPH--------PFMRGKVIVE 106 (106)
T ss_dssp EEE--C-SCEEEEEECSSC--------TTCEEEEEEC
T ss_pred EEe--C-CCEEEEEEeCCC--------CCCEEEEEEC
Confidence 877 4 789999999886 2999999984
No 107
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=97.88 E-value=2.4e-05 Score=68.51 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=30.7
Q ss_pred cCCCCcceeeeEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEcC
Q 008071 171 KEKGPTWTKKTYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRHH 220 (579)
Q Consensus 171 i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~dp 220 (579)
+.||+++ ++.| + .+|+|+|+|..| ..+||.|.|+|.++
T Consensus 58 ~~pG~t~---~~tF--~-~~G~y~y~C~~H------~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 58 TTVGQEA---VVKF--D-KEGVYGFKCAPH------YMMGMVALVVVGDK 95 (123)
T ss_dssp CCTTSCE---EEEC--C-SCEEEEEECSTT------TTTTCEEEEEESSC
T ss_pred cCCCCEE---EEEe--C-CCeEEEEEeCCc------cccCCEEEEEEcCC
Confidence 4689988 7777 4 789999999864 34799999999853
No 108
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.78 E-value=3.4e-05 Score=68.07 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=33.4
Q ss_pred ccCCCCcceeeeEEEeCC--CCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 170 FKEKGPTWTKKTYHYHNM--QQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~--~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
.+.||+++ ++.|.++ ..+|+|||.|-..| |.. ||.|-|+|.+
T Consensus 86 ~l~pGet~---svtf~~~~~~~~G~Y~f~C~~pg----H~~-~M~G~i~V~~ 129 (129)
T 1cuo_A 86 IIGGGEKT---SVKFKVSALSKDEAYTYFCSYPG----HFS-MMRGTLKLEE 129 (129)
T ss_dssp CBCTTCEE---EEEEEGGGCCTTSCEEEECCSTT----CTT-TSEEEEEEEC
T ss_pred EECCCCEE---EEEEeccccCCCceEEEEeCCCC----chH-cCEEEEEEeC
Confidence 47899999 8888874 37999999997654 333 8999999973
No 109
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.69 E-value=3e-05 Score=71.31 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=33.1
Q ss_pred ccCCCCcceeeeEEEeCC-CCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 170 FKEKGPTWTKKTYHYHNM-QQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~-~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
.|.||+++ ++.|..+ -.+|+|||+|-..| |.. ||.|-|+|.+
T Consensus 125 ~l~pGet~---svtf~~~~lkpG~Y~f~Ct~Pg----H~~-gM~G~i~V~~ 167 (167)
T 3ay2_A 125 LIGGGEES---SLTLDPAKLADGDYKFACTFPG----HGA-LMNGKVTLVD 167 (167)
T ss_dssp CBCTTCEE---EEEECGGGGTTSCEEEECCSTT----GGG-TSEEEEEEEC
T ss_pred eeCCCCEE---EEEEecCCCCCcEEEEEcCCCC----chh-cCEEEEEEeC
Confidence 47899998 8888764 26899999998754 333 8999999973
No 110
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.59 E-value=0.00012 Score=63.91 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=48.0
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|+|++||+|+ |.|.-. .++++......+ +|... +. +.||+++
T Consensus 20 P~~i~V~~GdtV~--f~n~d~----------------------~H~v~~~~~~~p---~~~~~--~~---~~~g~t~--- 64 (122)
T 2ux6_A 20 PASLKVAPGDTVT--FIPTDK----------------------GHNVETIKGMIP---DGAEA--FK---SKINENY--- 64 (122)
T ss_dssp SSEEEECTTEEEE--EEESSS----------------------SCCCEECTTCSC---TTCCC--CB---CCTTCCE---
T ss_pred CCEEEECCCCEEE--EEECCC----------------------CcEEEEcccccC---CCcce--ee---cCCCCEE---
Confidence 4689999999865 456421 244444431111 12211 22 4689988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEEc
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~d 219 (579)
++.| + .+|+|||+|-.|. .|.|.|+|.+
T Consensus 65 ~~tF--~-~~G~y~y~C~~H~--------~M~G~I~V~~ 92 (122)
T 2ux6_A 65 KVTF--T-APGVYGVKCTPHP--------FMVGVVQVGD 92 (122)
T ss_dssp EEEE--C-SCEEEEEEETTEE--------EEEEEEEESS
T ss_pred EEEe--C-CCEEEEEEeCCCc--------cCEEEEEEeC
Confidence 8888 4 7899999998862 3999999996
No 111
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.50 E-value=0.00022 Score=62.79 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=31.7
Q ss_pred ccCCCCcceeeeEEEeCC--CCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 170 FKEKGPTWTKKTYHYHNM--QQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~--~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.|.||+++ ++.|.++ .+.|+|||.|-..| |. .||.|-|+|.
T Consensus 86 ~l~pGet~---svtf~~~~l~~G~~Y~f~C~~pg----H~-~gM~G~i~V~ 128 (129)
T 2ccw_A 86 VIGGGESD---SVTFDVSKIAAGENYAYFCSFPG----HW-AMMKGTLKLG 128 (129)
T ss_dssp CBCTTCEE---EEEEEGGGSCTTCCEEEECCSTT----GG-GTSEEEEEEC
T ss_pred EECCCCEE---EEEEeccccCCCceEEEEeCCCC----hh-HcCEEEEEEe
Confidence 47899999 8888874 34456999997654 33 3899999996
No 112
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.46 E-value=0.00017 Score=61.07 Aligned_cols=76 Identities=28% Similarity=0.428 Sum_probs=51.5
Q ss_pred eecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCccccccc
Q 008071 436 KSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSE 515 (579)
Q Consensus 436 ~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~ 515 (579)
..|. |..+.++.|+.+.|. |.+...|.+|+|... + |.
T Consensus 28 ~~F~-P~~i~v~~Gd~V~~~--N~d~~~H~v~~~~~~-----------------------~-----------g~------ 64 (105)
T 2ov0_A 28 MKYE-TPELHVKVGDTVTWI--NREAMPHNVHFVAGV-----------------------L-----------GE------ 64 (105)
T ss_dssp TEES-SSEEEECTTCEEEEE--ECSSSCBCCEECTTT-----------------------S-----------SS------
T ss_pred cEEc-CCEEEECCCCEEEEE--ECCCCCEEEEEcCCC-----------------------C-----------Cc------
Confidence 3443 566789999999985 877778999987521 0 20
Q ss_pred ccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 516 HEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 516 ~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
..|. .-.+.||++.++ .|+ .|| |.|||++ |. ||...+.|
T Consensus 65 --~~~~-~~~~~pG~~~~~--tf~--------------~~G~y~y~C~~--H~--gM~G~i~V 104 (105)
T 2ov0_A 65 --AALK-GPMMKKEQAYSL--TFT--------------EAGTYDYHCTP--HP--FMRGKVVV 104 (105)
T ss_dssp --SCEE-CCCBCTTEEEEE--EEC--------------SCEEEEEECSS--CT--TCEEEEEE
T ss_pred --cccc-ccccCCCCEEEE--EeC--------------CCEEEEEEeCC--CC--CCEEEEEE
Confidence 0011 113678886654 675 568 9999998 65 89888876
No 113
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.31 E-value=0.00091 Score=58.74 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=30.8
Q ss_pred ccCCCCcceeeeEEEeCC-CCCce-eeeecCCCChhhhhhcccceEEEEEE
Q 008071 170 FKEKGPTWTKKTYHYHNM-QQPGN-LWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~-~~~Gt-~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.+.||+++ ++.|..+ -.+|+ |||.|-..| |.. ||.|-|+|.
T Consensus 86 ~l~pGet~---svtf~~~~l~~G~~Y~f~C~~Pg----H~~-gM~G~i~V~ 128 (128)
T 1nwp_A 86 VIGAGEKD---SVTFDVSKLAAGEKYGFFCSFPG----HIS-MMKGTVTLK 128 (128)
T ss_dssp CBCTTCEE---EEEEEGGGSCTTSCEEEECCSTT----CGG-GSEEEEEEC
T ss_pred eeCCCCEE---EEEEeccccCCCceEEEEECCCC----hhH-CCEEEEEEC
Confidence 47899999 8888874 13555 999998654 333 899999984
No 114
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.26 E-value=0.00071 Score=73.01 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=57.1
Q ss_pred ccEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceee
Q 008071 101 GPTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKK 180 (579)
Q Consensus 101 GPtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~ 180 (579)
-+.|+|++||+|++.++|.-... .+.++....+. | +.. .+.||++.
T Consensus 557 P~eI~VP~GdtVrfiLTN~D~ve------------------DViHSF~IPsl-------G-----IK~-DaiPGrtn--- 602 (638)
T 3sbq_A 557 VQEFTVKQGDEVTVTITNIDQIE------------------DVSHGFVVVNH-------G-----VSM-EISPQQTS--- 602 (638)
T ss_dssp CCEEEEETTCEEEEEEEECCCST------------------TCCEEEEETTT-------T-----EEE-EECTTCEE---
T ss_pred CCEEEEecCceeEEEEecCCcCC------------------CceeeeEecCC-------C-----cee-eeCCCCeE---
Confidence 46899999999999999964310 01344443332 1 111 36799988
Q ss_pred eEEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 181 TYHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 181 ~y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
++.|.++ .+|+|||||...... .| .+|.|.++|+
T Consensus 603 svtFtad-kPGvY~y~CSE~CGa-~H--s~M~G~ViVE 636 (638)
T 3sbq_A 603 SITFVAD-KPGLHWYYCSWFCHA-LH--MEMVGRMMVE 636 (638)
T ss_dssp EEEEECC-SCEEEEEECCSCCST-TC--TTCEEEEEEE
T ss_pred EEEEEcC-CCEEEEEECCCcCCC-Cc--ccceEEEEEe
Confidence 9999998 999999999964322 23 6899999998
No 115
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.24 E-value=0.0011 Score=58.24 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=31.6
Q ss_pred ccCCCCcceeeeEEEeCC-CCCc-eeeeecCCCChhhhhhcccceEEEEEE
Q 008071 170 FKEKGPTWTKKTYHYHNM-QQPG-NLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~-~~~G-t~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.+.||+++ ++.|..+ -.+| +|+|.|-..| |. .||.|-|+|.
T Consensus 85 ~l~pGes~---~vtf~~~~l~~G~~Y~f~C~~Pg----H~-~gM~G~i~V~ 127 (128)
T 2iaa_C 85 VIGGGETD---SVTFDVSKLKEGEDYAFFCSFPG----HW-SIMKGTIELG 127 (128)
T ss_dssp CBCTTCEE---EEEEESSCCCTTCCEEEECCSTT----CT-TTSEEEEEEC
T ss_pred eeCCCCEE---EEEEeccccCCCceEEEEECCCC----hh-HCCEEEEEEe
Confidence 47899999 8888864 1467 5999997654 32 3899999996
No 116
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=97.03 E-value=0.0012 Score=60.05 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=58.3
Q ss_pred EEEcCeecCCCcccccCCCCeEEEEEEeCC-CCCceeeeeec--cEEEEeEechhhhHHhhhhhhccCCccccccccccc
Q 008071 431 LFINGKSYEEPVTETPKAGTSEVWNVINLT-EDNHPLHIHLG--LFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYAR 507 (579)
Q Consensus 431 ~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~-~~~HP~HlHg~--~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 507 (579)
+.++|.. ...+.++.|+.+.+++.|.+ ...|-|-++.. .|.. + . .+
T Consensus 53 ~~~~g~~---~p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~--------------~-~--~~----------- 101 (154)
T 2cal_A 53 FEVHDKK---NPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAV--------------M-P--VI----------- 101 (154)
T ss_dssp EEETTEE---SCEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCS--------------S-C--CC-----------
T ss_pred ccccCCC---CCEEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhc--------------c-c--cc-----------
Confidence 5566652 23578999999999999973 44666655521 1100 0 0 00
Q ss_pred CcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 508 GKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 508 G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.... . .-.-+..+.||++.+..+.|. . .|| |.||||+--|...||-..+.|
T Consensus 102 ~~~~---~---~~~~~~~i~PG~sgt~t~tft------------~-~pGtY~y~C~~~gH~~~GM~G~IiV 153 (154)
T 2cal_A 102 DPIV---A---GTGFSPVPKDGKFGYTDFTWH------------P-TAGTYYYVCQIPGMAATGMFGKIVV 153 (154)
T ss_dssp CSEE---E---EBCCCCCCBTTBEEEEEEEEC------------C-CSEEEEEECCSTTTGGGTCEEEEEE
T ss_pred cccc---c---ccccccccCCCCceEEEEEEE------------E-CCceEEEECCCCCHHHCCCEEEEEE
Confidence 0000 0 000112567998333334665 2 468 999999999999999998876
No 117
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.95 E-value=0.0022 Score=70.38 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=57.9
Q ss_pred EEEcCeecCCCcccccCCCCeEEEEEEeCCC---CCceeeeeeccEEEEeEechhhhHHhhhhhhccCCccccccccccc
Q 008071 431 LFINGKSYEEPVTETPKAGTSEVWNVINLTE---DNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYAR 507 (579)
Q Consensus 431 ~~iNg~~~~~~~~~~~~~G~~~~w~l~N~~~---~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 507 (579)
|..|+ .| .+..+.++.|+.++|.+.|... ..|.|++++..+
T Consensus 504 ~~~n~-~f-~pp~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~gv---------------------------------- 547 (595)
T 1fwx_A 504 SSVAP-SF-SIESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGV---------------------------------- 547 (595)
T ss_dssp EEETT-EE-SCSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE----------------------------------
T ss_pred EEecC-cc-cCCEEEEECCCEEEEEEEeCCCCCCceeeEEecCCCc----------------------------------
Confidence 55565 34 3556789999999999999643 378887765321
Q ss_pred CcccccccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecc---ccccccCccccEEEc
Q 008071 508 GKKLEVSEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHV---LDHEDNVMMRPLKLI 578 (579)
Q Consensus 508 G~~~~~~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHi---l~Hed~GMm~~~~V~ 578 (579)
+ ..+.||++.++.+.|+ .|| |.||||. ..|. ||...+.|.
T Consensus 548 -------------~--~~i~PG~t~t~~Fta~--------------~pGtY~yhC~e~Cg~~H~--gM~G~IiV~ 591 (595)
T 1fwx_A 548 -------------A--MEIGPQMTSSVTFVAA--------------NPGVYWYYCQWFCHALHM--EMRGRMLVE 591 (595)
T ss_dssp -------------E--EEECTTCEEEEEEECC--------------SCEEEEEECCSCCSTTCT--TCEEEEEEE
T ss_pred -------------c--eeeCCCCeEEEEEECC--------------CCEEEEEECCCCCCCCcc--CCEEEEEEE
Confidence 1 3567888776644443 788 9999993 5675 999999885
No 118
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=96.41 E-value=0.007 Score=50.16 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=53.0
Q ss_pred CCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCc
Q 008071 440 EPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKG 519 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~ 519 (579)
.|..+.++.|+++.|. |.+...|-+.++...+ ++ |- .. ...
T Consensus 16 ~P~~i~v~~GdtV~~~--n~~~~~H~v~~~~~~~----------p~----------------------g~-~~----~~~ 56 (98)
T 1iuz_A 16 VPSKISVAAGEAIEFV--NNAGFPHNIVFDEDAV----------PA----------------------GV-DA----DAI 56 (98)
T ss_dssp ESSEEEECTTCEEEEE--ECSSCCEEEEECTTSS----------CT----------------------TC-CH----HHH
T ss_pred eCCEEEECCCCEEEEE--ECCCCCEEEEEeCCCC----------cc----------------------cc-cc----ccc
Confidence 3667789999999986 7666678766543100 00 10 00 000
Q ss_pred ccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 520 WKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 520 ~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
-.+...+.||++.++ .|. .|| |.|+|-+ |..+||-..+.|
T Consensus 57 ~~~~~~~~~g~~~~~--tf~--------------~~G~y~y~C~~--H~~~gM~G~I~V 97 (98)
T 1iuz_A 57 SYDDYLNSKGETVVR--KLS--------------TPGVYGVYCEP--HAGAGMKMTITV 97 (98)
T ss_dssp CEEEEECSTTCEEEE--ECC--------------SCEEEEEECTT--TGGGTCEEEEEE
T ss_pred cccccccCCCCEEEE--EcC--------------CCEEEEEEchh--hccCCCEEEEEE
Confidence 123467889997765 665 568 9999986 999999998877
No 119
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=96.16 E-value=0.0083 Score=50.63 Aligned_cols=78 Identities=27% Similarity=0.380 Sum_probs=50.7
Q ss_pred cCeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCccccc
Q 008071 434 NGKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEV 513 (579)
Q Consensus 434 Ng~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~ 513 (579)
.+..|. |..+.++.|+++.|. |.+...|.+++.... . |.
T Consensus 27 ~~~~F~-P~~i~V~~G~tV~~~--N~d~~~H~v~~~~~~----------------------~------------~~---- 65 (106)
T 1id2_A 27 EKMKYL-TPEVTIKAGETVYWV--NGEVMPHNVAFKKGI----------------------V------------GE---- 65 (106)
T ss_dssp ETTEES-SSEEEECTTCEEEEE--ECSSSCBCCEECTTT----------------------S------------SS----
T ss_pred EecEEe-CCEEEECCCCEEEEE--ECCCCcEEEEEeCCC----------------------C------------Cc----
Confidence 344553 566789999999987 776667776653210 0 10
Q ss_pred ccccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 514 SEHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 514 ~~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
..| ++-.+.||++.++ .|. .|| |.|+|-+ |. ||...+.|
T Consensus 66 ----~~~-~s~~l~~g~~~~~--tf~--------------~~G~y~~~C~~--H~--~M~G~I~V 105 (106)
T 1id2_A 66 ----DAF-RGEMMTKDQAYAI--TFN--------------EAGSYDYFCTP--HP--FMRGKVIV 105 (106)
T ss_dssp ----SCE-ECCCBCTTEEEEE--EEC--------------SCEEEEEECSS--CT--TCEEEEEE
T ss_pred ----ccc-cccccCCCCEEEE--EeC--------------CCEEEEEEeCC--CC--CCEEEEEE
Confidence 012 2224678887655 675 568 9999987 76 89888876
No 120
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=95.96 E-value=0.23 Score=45.36 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=52.8
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeee
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKT 181 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~ 181 (579)
..|++..|++|++.++|. +- .++... +.. | +.. .+.||... .
T Consensus 93 n~l~VP~G~~Vr~~vTS~-DV---------------------iHsf~I-----P~l--g-----ik~-da~PG~~n---~ 134 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSP-DV---------------------IHGFHV-----EGT--N-----INV-EVLPGEVS---T 134 (168)
T ss_dssp SSEEEETTSEEEEEEECS-SS---------------------CEEEEE-----TTS--S-----CEE-EECTTBCE---E
T ss_pred CEEEEeCCCeEEEEEecC-Cc---------------------eEEEEE-----CCC--C-----eEE-EecCCcee---E
Confidence 369999999999999996 22 233333 221 1 111 25688877 8
Q ss_pred EEEeCCCCCceeeeecCC-CChhhhhhcccceEEEEEEc
Q 008071 182 YHYHNMQQPGNLWYHDHA-MGLTRINLLAGLVGAYIVRH 219 (579)
Q Consensus 182 y~~~~~~~~Gt~wYH~H~-~g~t~~qv~~GL~G~lIV~d 219 (579)
+.|..+ ++|+|++.|.. .|. .| ++|.|-++|++
T Consensus 135 ~~~~~~-kpG~y~g~Cse~CG~--~H--s~M~g~V~V~e 168 (168)
T 3s8f_B 135 VRYTFK-RPGEYRIICNQYCGL--GH--QNMFGTIVVKE 168 (168)
T ss_dssp EEEECC-SCEEEEEECCSCCST--TG--GGCEEEEEEEC
T ss_pred EEEEeC-CCEEEEEECCcCCCC--Cc--CCCEEEEEEeC
Confidence 889988 99999999984 332 23 78999999973
No 121
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=95.96 E-value=0.011 Score=52.06 Aligned_cols=77 Identities=27% Similarity=0.378 Sum_probs=51.0
Q ss_pred CeecCCCcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccc
Q 008071 435 GKSYEEPVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVS 514 (579)
Q Consensus 435 g~~~~~~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~ 514 (579)
+..|. |..+.++.|+++.|. |.+...|-+++.... + |.
T Consensus 54 ~~~F~-P~~i~V~~GdtV~~~--N~d~~~H~v~~~~~~-----------------------~-----------g~----- 91 (132)
T 3c75_A 54 KMKYL-TPEVTIKAGETVYWV--NGEVMPHNVAFKKGI-----------------------V-----------GE----- 91 (132)
T ss_dssp TTEES-SSEEEECTTCEEEEE--ECSSSCBCCEECTTT-----------------------S-----------SS-----
T ss_pred eeEEe-CCEEEECCCCEEEEE--ECCCCceEEEEeCCC-----------------------C-----------Cc-----
Confidence 44553 566789999999986 877667877763210 0 10
Q ss_pred cccCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 515 EHEKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 515 ~~~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
..| ++-.+.||++.++ .|+ .|| |-|||-+ |. ||-..+.|
T Consensus 92 ---~~~-~s~~l~pG~t~~~--tF~--------------~~G~y~y~C~~--H~--gM~G~I~V 131 (132)
T 3c75_A 92 ---DAF-RGEMMTKDQAYAI--TFN--------------EAGSYDYFCTP--HP--FMRGKVIV 131 (132)
T ss_dssp ---SCE-ECCCBCTTEEEEE--EEC--------------SCEEEEEECSS--CT--TCEEEEEE
T ss_pred ---ccc-cccccCCCCEEEE--EcC--------------CCEEEEEEeCC--Cc--CCEEEEEE
Confidence 012 2224678887655 675 568 9999986 76 99988876
No 122
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=95.84 E-value=0.0058 Score=53.47 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=27.4
Q ss_pred CCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 527 TPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 527 ~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.||++.++ .|+ .|| |.|||- .|...||...+.|.
T Consensus 61 ~pGet~s~--TF~--------------~pG~y~y~C~--~H~~~GM~G~I~V~ 95 (127)
T 3tu6_A 61 KINEEITV--TLS--------------KPGVYMYQCA--PHVGMGMIGAIVVG 95 (127)
T ss_dssp CTTCCCEE--ECC--------------SCEEEEEECT--TTGGGTCEEEEEES
T ss_pred CCCCEEEE--EeC--------------CCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 57876544 675 678 999999 69999999999885
No 123
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.71 E-value=0.04 Score=48.65 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=50.8
Q ss_pred EEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeeeE
Q 008071 103 TIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKTY 182 (579)
Q Consensus 103 tI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~y 182 (579)
.|+++.|++|++.++|. .- .++.- ++.. |. .. .+.||..- ++
T Consensus 61 ~l~Vp~G~~V~~~vts~-DV---------------------~Hsf~-----ip~~--~~-----k~-d~~PG~~~---~~ 102 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSP-DV---------------------IHGFH-----VEGT--NI-----NV-EVLPGEVS---TV 102 (135)
T ss_dssp SEEEETTSEEEEEEEBS-SS---------------------CEEEE-----ETTS--SC-----EE-EECBTBCE---EE
T ss_pred EEEEcCCCEEEEEEEeC-Cc---------------------cceEE-----ecCC--Cc-----ee-EeCCCCcE---EE
Confidence 79999999999999996 22 34433 2221 11 11 25688776 88
Q ss_pred EEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 183 HYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 183 ~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.|..+ .+|+|+|+|...-- ..| .+|.|-++|.
T Consensus 103 ~~~~~-~~G~y~~~C~e~CG-~~H--~~M~g~v~V~ 134 (135)
T 2cua_A 103 RYTFK-RPGEYRIICNQYCG-LGH--QNMFGTIVVK 134 (135)
T ss_dssp EEECC-SCEEEEEECCSCCS-TTS--TTCEEEEEEE
T ss_pred EEEcC-CCEEEEEECcccCC-CCc--CCCEEEEEEE
Confidence 88887 99999999954211 123 5899999986
No 124
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=95.70 E-value=0.0088 Score=52.06 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.1
Q ss_pred eCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 526 MTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 526 v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+.||++.++ .|+ .|| |.|||- .|...||...+.|-
T Consensus 59 ~~pg~t~s~--TF~--------------~~G~y~Y~C~--~H~~~GM~G~I~V~ 94 (124)
T 3ef4_A 59 GGFSKEVVF--NAE--------------KEGLYVLKCA--PHYGMGMVVLVQVG 94 (124)
T ss_dssp CCTTCCEEE--ECC--------------SSEEEEEECT--TTGGGTCEEEEEES
T ss_pred cCCCCEEEE--EeC--------------CCeEEEEEcC--CCCcCCCEEEEEEC
Confidence 457886654 776 678 999995 89999999999874
No 125
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=95.52 E-value=0.013 Score=50.84 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.4
Q ss_pred eCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 526 MTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 526 v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+.||++.++ +|+ .|| |.|+|- .|...||...+.|-
T Consensus 58 ~~pg~t~s~--TF~--------------~pG~y~y~C~--~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 58 SKINESYTL--TVT--------------EPGLYGVKCT--PHFGMGMVGLVQVG 93 (123)
T ss_dssp CCTTCCEEE--EEC--------------SCEEEEEECG--GGTTTTCEEEEEES
T ss_pred cCCCCEEEE--EeC--------------CCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 457886544 776 678 999999 89999999999885
No 126
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=95.16 E-value=0.082 Score=45.79 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=28.5
Q ss_pred ccCCCCcceeeeEEEeCC--CCCceeeeecCCCChhhhhhcccceEEEEEE
Q 008071 170 FKEKGPTWTKKTYHYHNM--QQPGNLWYHDHAMGLTRINLLAGLVGAYIVR 218 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~--~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~ 218 (579)
.+.||+++ +..|+.+ ..+|+|.|-|--| . ||.|-++|.
T Consensus 86 ~l~pGes~---~vtf~~~~l~~~G~y~f~C~gH------~--~M~G~v~V~ 125 (125)
T 3fsa_A 86 LIGSGEKD---SVTFDVSKLKEGEQYMFFCAAH------A--AMKGTLTLK 125 (125)
T ss_dssp CBCTTCEE---EEEEEGGGC---CCEEEECSSS------T--TCEEEEEEC
T ss_pred eeCCCcEE---EEEEeCcCcCCCccEEEEcCCC------C--CcEEEEEEC
Confidence 47899999 7777765 3789999999943 2 899999883
No 127
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=93.92 E-value=0.075 Score=46.05 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=27.1
Q ss_pred CCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 527 TPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 527 ~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.||++.++ .|+ .|| |.|+|- .|...||...+.|.
T Consensus 59 ~pG~t~~~--tF~--------------~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1paz_A 59 KINENYVL--TVT--------------QPGAYLVKCT--PHYAMGMIALIAVG 93 (123)
T ss_dssp CTTCCEEE--ECC--------------SCEEEEEECT--TTGGGTCEEEEEES
T ss_pred CCCCEEEE--EeC--------------CCEEEEEEeC--CcccCCCEEEEEEc
Confidence 57886544 675 568 999997 59999999999885
No 128
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=93.48 E-value=0.078 Score=45.95 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=27.7
Q ss_pred eCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 526 MTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 526 v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
+.||++.++ .|+ .|| |.|+|- .|...||...+.|.
T Consensus 58 ~~pG~t~~~--tF~--------------~~G~y~y~C~--~H~~~gM~G~I~V~ 93 (123)
T 1pmy_A 58 TTVGQEAVV--KFD--------------KEGVYGFKCA--PHYMMGMVALVVVG 93 (123)
T ss_dssp CCTTSCEEE--ECC--------------SCEEEEEECS--TTTTTTCEEEEEES
T ss_pred cCCCCEEEE--EeC--------------CCeEEEEEeC--CccccCCEEEEEEc
Confidence 457886544 675 568 999997 59999999999885
No 129
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.20 E-value=0.56 Score=50.83 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=53.5
Q ss_pred CCcccccCCCCeEEEEEEeCC---CCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccc
Q 008071 440 EPVTETPKAGTSEVWNVINLT---EDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEH 516 (579)
Q Consensus 440 ~~~~~~~~~G~~~~w~l~N~~---~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~ 516 (579)
.|..+.++.|+.+.|.+.|.. ...|.|.+.....
T Consensus 556 sP~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGI------------------------------------------- 592 (638)
T 3sbq_A 556 GVQEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGV------------------------------------------- 592 (638)
T ss_dssp SCCEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE-------------------------------------------
T ss_pred cCCEEEEecCceeEEEEecCCcCCCceeeeEecCCCc-------------------------------------------
Confidence 456678999999999999973 3567776544211
Q ss_pred cCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecccccc-ccCccccEEEc
Q 008071 517 EKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHE-DNVMMRPLKLI 578 (579)
Q Consensus 517 ~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~He-d~GMm~~~~V~ 578 (579)
-+.+.||++..+.+.|+ .|| |.+||...-|. +.+|...+.|.
T Consensus 593 ------K~DaiPGrtnsvtFtad--------------kPGvY~y~CSE~CGa~Hs~M~G~ViVE 636 (638)
T 3sbq_A 593 ------SMEISPQQTSSITFVAD--------------KPGLHWYYCSWFCHALHMEMVGRMMVE 636 (638)
T ss_dssp ------EEEECTTCEEEEEEECC--------------SCEEEEEECCSCCSTTCTTCEEEEEEE
T ss_pred ------eeeeCCCCeEEEEEEcC--------------CCEEEEEECCCcCCCCcccceEEEEEe
Confidence 12566787776644443 678 99999987775 45788877663
No 130
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=90.51 E-value=0.85 Score=39.98 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=49.2
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|....++.|+.++|.+.|.+ ..|.| .|-+. | .
T Consensus 59 P~~l~Vp~G~~V~~~vts~D-V~Hsf-------~ip~~-----------------------------~-----------~ 90 (135)
T 2cua_A 59 PNPIEVPQGAEIVFKITSPD-VIHGF-------HVEGT-----------------------------N-----------I 90 (135)
T ss_dssp SSSEEEETTSEEEEEEEBSS-SCEEE-------EETTS-----------------------------S-----------C
T ss_pred CCEEEEcCCCEEEEEEEeCC-ccceE-------EecCC-----------------------------C-----------c
Confidence 55678999999999999974 34433 22111 1 1
Q ss_pred cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecc---ccccccCccccEEEcC
Q 008071 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHV---LDHEDNVMMRPLKLIK 579 (579)
Q Consensus 521 kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHi---l~Hed~GMm~~~~V~~ 579 (579)
| +.+.||....+.+.|+ .|| |-++|.. ..| .+|-..++|++
T Consensus 91 k--~d~~PG~~~~~~~~~~--------------~~G~y~~~C~e~CG~~H--~~M~g~v~V~~ 135 (135)
T 2cua_A 91 N--VEVLPGEVSTVRYTFK--------------RPGEYRIICNQYCGLGH--QNMFGTIVVKE 135 (135)
T ss_dssp E--EEECBTBCEEEEEECC--------------SCEEEEEECCSCCSTTS--TTCEEEEEEEC
T ss_pred e--eEeCCCCcEEEEEEcC--------------CCEEEEEECcccCCCCc--CCCEEEEEEEC
Confidence 1 3456777666655554 678 9999987 556 48888888763
No 131
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=89.72 E-value=0.82 Score=41.61 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=33.4
Q ss_pred ceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 522 NVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 522 DTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.+..|.||++.+|.+.+.. -.|| |-|+|-+--|.. ||-+.+.|.+
T Consensus 122 ~t~~l~pGet~svtf~~~~------------lkpG~Y~f~Ct~PgH~~-gM~G~i~V~~ 167 (167)
T 3ay2_A 122 HTKLIGGGEESSLTLDPAK------------LADGDYKFACTFPGHGA-LMNGKVTLVD 167 (167)
T ss_dssp ECCCBCTTCEEEEEECGGG------------GTTSCEEEECCSTTGGG-TSEEEEEEEC
T ss_pred cceeeCCCCEEEEEEecCC------------CCCcEEEEEcCCCCchh-cCEEEEEEeC
Confidence 4556899998877444320 1357 999999999988 8999888854
No 132
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=89.60 E-value=0.31 Score=41.98 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEc
Q 008071 527 TPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLI 578 (579)
Q Consensus 527 ~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~ 578 (579)
.||++.++ .|+ .|| |.|+|-+ |.. |...+.|.
T Consensus 59 ~~g~t~~~--tF~--------------~~G~y~y~C~~--H~~--M~G~I~V~ 91 (122)
T 2ux6_A 59 KINENYKV--TFT--------------APGVYGVKCTP--HPF--MVGVVQVG 91 (122)
T ss_dssp CTTCCEEE--EEC--------------SCEEEEEEETT--EEE--EEEEEEES
T ss_pred CCCCEEEE--EeC--------------CCEEEEEEeCC--Ccc--CEEEEEEe
Confidence 57776544 776 568 9999987 776 88888875
No 133
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=85.38 E-value=2.5 Score=36.58 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=33.7
Q ss_pred ceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 522 NVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 522 DTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.+..|.||++.++.+.+.. -..|| |-|.|-+--|.. ||-..+.|.+
T Consensus 83 ~t~~l~pGet~svtf~~~~-----------~~~~G~Y~f~C~~pgH~~-~M~G~i~V~~ 129 (129)
T 1cuo_A 83 FTPIIGGGEKTSVKFKVSA-----------LSKDEAYTYFCSYPGHFS-MMRGTLKLEE 129 (129)
T ss_dssp ECCCBCTTCEEEEEEEGGG-----------CCTTSCEEEECCSTTCTT-TSEEEEEEEC
T ss_pred eeeEECCCCEEEEEEeccc-----------cCCCceEEEEeCCCCchH-cCEEEEEEeC
Confidence 4556889999888554420 01467 999999988988 8999888853
No 134
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=84.69 E-value=1.8 Score=37.55 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=33.7
Q ss_pred ceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 522 NVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 522 DTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.+..|.||++.++.+.|... ..|+ |-|.|-+--|.. ||-..+.|.+
T Consensus 82 ~t~~l~pGes~~vtf~~~~l-----------~~G~~Y~f~C~~PgH~~-gM~G~i~V~~ 128 (128)
T 2iaa_C 82 HTSVIGGGETDSVTFDVSKL-----------KEGEDYAFFCSFPGHWS-IMKGTIELGS 128 (128)
T ss_dssp ECCCBCTTCEEEEEEESSCC-----------CTTCCEEEECCSTTCTT-TSEEEEEECC
T ss_pred cceeeCCCCEEEEEEecccc-----------CCCceEEEEECCCChhH-CCEEEEEEeC
Confidence 35568999998885544200 1345 999999999988 8999998864
No 135
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=82.62 E-value=0.89 Score=29.96 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 008071 4 VERVLFLYLMFLAAARVMI 22 (579)
Q Consensus 4 ~~r~~~l~~~~~~~~~~~~ 22 (579)
++||.||...++++++.++
T Consensus 3 lsRR~FLK~~aaa~Aaaaa 21 (35)
T 2pq4_B 3 LSRRSFMKANAVAAAAAAA 21 (35)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 7999999987666655444
No 136
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=81.79 E-value=3 Score=36.09 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=33.6
Q ss_pred ceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEEcC
Q 008071 522 NVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKLIK 579 (579)
Q Consensus 522 DTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V~~ 579 (579)
.+..|.||++.++.+.+.. -..|+ |-|.|-+--|.. ||-..+.|.+
T Consensus 83 ~t~~l~pGet~svtf~~~~-----------l~~G~~Y~f~C~~pgH~~-gM~G~i~V~~ 129 (129)
T 2ccw_A 83 HTKVIGGGESDSVTFDVSK-----------IAAGENYAYFCSFPGHWA-MMKGTLKLGS 129 (129)
T ss_dssp ECCCBCTTCEEEEEEEGGG-----------SCTTCCEEEECCSTTGGG-TSEEEEEECC
T ss_pred eeeEECCCCEEEEEEeccc-----------cCCCceEEEEeCCCChhH-cCEEEEEEeC
Confidence 3556899999888554420 01346 999999999988 8999988864
No 137
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=80.96 E-value=3.2 Score=35.85 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.0
Q ss_pred ceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 522 NVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 522 DTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
.|-.|.||++.++.+.+.. -..|+ |-|.|-+--|.. ||-..+.|
T Consensus 83 ~t~~l~pGet~svtf~~~~-----------l~~G~~Y~f~C~~PgH~~-gM~G~i~V 127 (128)
T 1nwp_A 83 HTKVIGAGEKDSVTFDVSK-----------LAAGEKYGFFCSFPGHIS-MMKGTVTL 127 (128)
T ss_dssp ECCCBCTTCEEEEEEEGGG-----------SCTTSCEEEECCSTTCGG-GSEEEEEE
T ss_pred eeeeeCCCCEEEEEEeccc-----------cCCCceEEEEECCCChhH-CCEEEEEE
Confidence 3446899999888554420 01346 999999999988 88888876
No 138
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=76.93 E-value=9.6 Score=32.73 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=57.2
Q ss_pred CCcccccCC-CCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHh-hhhhhccCCccccccc-ccccCcccccccc
Q 008071 440 EPVTETPKA-GTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEF-KACMTKYNDAIKCHIS-KYARGKKLEVSEH 516 (579)
Q Consensus 440 ~~~~~~~~~-G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~-~~~~~~~~d~~~~~~~-~~~~G~~~~~~~~ 516 (579)
++..+.++. |+.+.++|.|.+..+ --.=+|.|-|.... +.++. ...+. ..+. .| .+ ...
T Consensus 16 ~p~~i~V~~~Ge~V~~~l~N~G~~p--~~~M~Hn~Vl~~~~---~~~~~~~~~m~-------~~~~~~y-----~~-~~d 77 (125)
T 3fsa_A 16 NTNAITVDKSCKQFTVNLSHPGNLP--KNVMGHNWVLSTAA---DMQGVVTDGMA-------SGLDKDY-----LK-PDD 77 (125)
T ss_dssp SCSEEEECTTCSEEEEEEECCSSCC--HHHHCBCCEEEEHH---HHHHHHHHHHH-------HCGGGTT-----SC-TTC
T ss_pred ecCEEEEecCCCEEEEEEEECCccc--ccccCceEEEcccc---hHHHHHHHHHh-------cChhhcc-----CC-CCC
Confidence 355667765 999999999988542 00012345444321 22222 11111 0000 11 00 011
Q ss_pred cCcccceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeeccccccccCccccEEE
Q 008071 517 EKGWKNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHVLDHEDNVMMRPLKL 577 (579)
Q Consensus 517 ~~~~kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHil~Hed~GMm~~~~V 577 (579)
....-.|..|.||++.+|.+.|.. -..|| |-|-|- -|. ||-+.+.|
T Consensus 78 ~~via~t~~l~pGes~~vtf~~~~-----------l~~~G~y~f~C~--gH~--~M~G~v~V 124 (125)
T 3fsa_A 78 SRVIAHTKLIGSGEKDSVTFDVSK-----------LKEGEQYMFFCA--AHA--AMKGTLTL 124 (125)
T ss_dssp TTCCEECCCBCTTCEEEEEEEGGG-----------C---CCEEEECS--SST--TCEEEEEE
T ss_pred ccceeccceeCCCcEEEEEEeCcC-----------cCCCccEEEEcC--CCC--CcEEEEEE
Confidence 223445667999999988655531 01457 999999 888 89888876
No 139
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=76.85 E-value=18 Score=30.72 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=54.4
Q ss_pred ECCcccCeEEec--C--cEEEEEEEecCCCeeEEEEEcCCCeEEEEecC--CCccC-------ccEEecEEEeCcceEEE
Q 008071 277 VNGKAWPRMTVR--R--RKYRFRIINASNARFYRFFFTNGLRFIHVAAD--SAYLG-------RPVVTNETLLAPSEIAD 343 (579)
Q Consensus 277 VNG~~~P~~~v~--~--~~~RlRllNa~~~~~~~l~l~~g~~f~via~D--G~~l~-------~p~~~~~l~l~pgeR~d 343 (579)
+||..-..++.. + -.+.|.+.|.+... ..|.+..|+.+.++-.| |..+= -........|.|||...
T Consensus 3 ~~~~l~~~v~~~~~g~~v~~~ltv~N~s~~~-v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~ 81 (120)
T 3isy_A 3 ENQEVVLSIDAIQEPEQIKFNMSLKNQSERA-IEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYD 81 (120)
T ss_dssp -CCSEEEEEEEEECSSCEEEEEEEEECSSSC-EEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEE
T ss_pred cccEEEEEEeeccCCCeEEEEEEEEcCCCCc-EEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEE
Confidence 455555554432 2 26778889999854 77888778876665554 64441 02235789999999999
Q ss_pred EEEEcCCC-CCcEEEEecC
Q 008071 344 VVIDFSES-KSDVAILAND 361 (579)
Q Consensus 344 vlv~~~~~-~g~~~~l~~~ 361 (579)
+-+..++. ..++|.|...
T Consensus 82 f~~~w~~~~~pG~Ytl~a~ 100 (120)
T 3isy_A 82 FSDVWKEVPEPGTYEVKVT 100 (120)
T ss_dssp EEEEESSCCCSEEEEEEEE
T ss_pred EEEEeCCCCCCccEEEEEE
Confidence 98888853 2347777653
No 140
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=74.10 E-value=12 Score=33.95 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=49.6
Q ss_pred CcccccCCCCeEEEEEEeCCCCCceeeeeeccEEEEeEechhhhHHhhhhhhccCCcccccccccccCcccccccccCcc
Q 008071 441 PVTETPKAGTSEVWNVINLTEDNHPLHIHLGLFVVLDQRELVKLEEFKACMTKYNDAIKCHISKYARGKKLEVSEHEKGW 520 (579)
Q Consensus 441 ~~~~~~~~G~~~~w~l~N~~~~~HP~HlHg~~Fqvl~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~~~~~~ 520 (579)
|....++.|+.++|.+.|. .-.|.|.+=. - | .
T Consensus 92 Pn~l~VP~G~~Vr~~vTS~-DViHsf~IP~-------l-----------------------------g-----------i 123 (168)
T 3s8f_B 92 PNPIEVPQGAEIVFKITSP-DVIHGFHVEG-------T-----------------------------N-----------I 123 (168)
T ss_dssp SSSEEEETTSEEEEEEECS-SSCEEEEETT-------S-----------------------------S-----------C
T ss_pred cCEEEEeCCCeEEEEEecC-CceEEEEECC-------C-----------------------------C-----------e
Confidence 5567799999999999997 3456554411 1 1 1
Q ss_pred cceEEeCCCcEEEEEEEEeeccCCCCCCCCCCCCCc-eEEeecc-ccccccCccccEEEc
Q 008071 521 KNVYKMTPGYVTKILVRFSYIHSNASYPFDPTAEPG-YVYHCHV-LDHEDNVMMRPLKLI 578 (579)
Q Consensus 521 kDTv~v~p~~~v~i~~rf~~~~~~~~~p~~~~~npg-w~~HCHi-l~Hed~GMm~~~~V~ 578 (579)
-+.+.||....+.+.|+ .|| |-+.|.. --+-+.+|...+.|.
T Consensus 124 --k~da~PG~~n~~~~~~~--------------kpG~y~g~Cse~CG~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 124 --NVEVLPGEVSTVRYTFK--------------RPGEYRIICNQYCGLGHQNMFGTIVVK 167 (168)
T ss_dssp --EEEECTTBCEEEEEECC--------------SCEEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred --EEEecCCceeEEEEEeC--------------CCEEEEEECCcCCCCCcCCCEEEEEEe
Confidence 12355777666655554 678 9999995 445567888888775
No 141
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=73.83 E-value=2.7 Score=29.90 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 008071 3 IVERVLFLYLMFLAAARVMI 22 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~ 22 (579)
.|+||+||-+++++++++.+
T Consensus 8 dm~RRqfln~l~~G~~a~~a 27 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPI 27 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 59999999877665554443
No 142
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=58.83 E-value=2.2 Score=39.09 Aligned_cols=21 Identities=38% Similarity=0.203 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHHHHHHHH
Q 008071 1 MAIVERVLFLYLMFLAAARVM 21 (579)
Q Consensus 1 ~~~~~r~~~l~~~~~~~~~~~ 21 (579)
|..++||+||..+++++++++
T Consensus 7 ~~~~~rr~fl~~~~~a~~~~~ 27 (175)
T 4aay_B 7 MVDIGRRQFLRGGALAAAGAT 27 (175)
T ss_dssp ---------------------
T ss_pred hccccHHHHhhhhHHhhhhee
Confidence 557999999995544444443
No 143
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=47.59 E-value=44 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=32.5
Q ss_pred cEEEEEEEecCCC-eeEEEEEcCCC-eEEEEecCCCccCccEEecEEEeCcceEEEEEEEcC
Q 008071 290 RKYRFRIINASNA-RFYRFFFTNGL-RFIHVAADSAYLGRPVVTNETLLAPSEIADVVIDFS 349 (579)
Q Consensus 290 ~~~RlRllNa~~~-~~~~l~l~~g~-~f~via~DG~~l~~p~~~~~l~l~pgeR~dvlv~~~ 349 (579)
-.|+|+|+|.+.. +.|.|.+. |. .+.+++ + ..+.|.|||..++-|...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~-g~~~l~~~g--------~---~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVK-GLNDVSWYG--------K---QTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEE-SCSSCEEES--------C---CEEEECTTCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEe-CCcccEEeC--------C---CcEEECCCCEEEEEEEEE
Confidence 3799999999976 56777774 42 233332 1 148999999887766443
No 144
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=46.97 E-value=2.4e+02 Score=28.45 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=13.3
Q ss_pred cccCCCCcceeeeEEEeCC
Q 008071 169 GFKEKGPTWTKKTYHYHNM 187 (579)
Q Consensus 169 ~~i~PG~~~~~~~y~~~~~ 187 (579)
.+|+|||+. +.+..+.
T Consensus 320 ~pI~PGETr---~~~v~a~ 335 (382)
T 1yew_A 320 SPLAPGETR---TVDVTAS 335 (382)
T ss_dssp SCBCTTCEE---EEEEEEE
T ss_pred CCcCCCcee---EEEEEee
Confidence 379999999 8888775
No 145
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=40.25 E-value=23 Score=33.06 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=51.8
Q ss_pred cEEEEECCCEEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCeEEeeCCCCCCCCCCCCCCccccccccCCCCcceeee
Q 008071 102 PTIEALHGIDTYVTWQNHLPSKHILPWDPTIPTAIPRKKKGIPTVVHLHGGIDEPESDGNANSWFTAGFKEKGPTWTKKT 181 (579)
Q Consensus 102 PtI~v~~Gd~v~v~~~N~l~~~~~~~~d~~~~~~~p~~~~~~~t~iH~HG~~~~~~~DG~p~~~~t~~~i~PG~~~~~~~ 181 (579)
-.|++..|++|++.+++.-- .|+..++.- | +.. .+.||..- .
T Consensus 41 n~l~lP~g~~V~~~lTS~DV---------------------------iHSF~IP~l--g-----vK~-daiPGr~n---~ 82 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNSV---------------------------MHSFFIPRL--G-----SQI-YAMAGMQT---R 82 (205)
T ss_dssp SEEEEETTSCEEEEEEESSS---------------------------CEEEEEGGG--T-----EEE-EECTTCCE---E
T ss_pred ceEEEeCCCEEEEEEecCCc---------------------------eeeEEeccc--C-----cEE-EecCCceE---E
Confidence 36999999999999998511 244444322 1 111 24578776 7
Q ss_pred EEEeCCCCCceeeeecCCCChhhhhhcccceEEEEEE-cC
Q 008071 182 YHYHNMQQPGNLWYHDHAMGLTRINLLAGLVGAYIVR-HH 220 (579)
Q Consensus 182 y~~~~~~~~Gt~wYH~H~~g~t~~qv~~GL~G~lIV~-dp 220 (579)
..|.++ .+|+|+..|.-..-. .+ +.|.+-++|. .+
T Consensus 83 l~~~~~-~pG~y~g~CsE~CG~-~H--s~M~~~v~vv~~~ 118 (205)
T 1cyx_A 83 LHLIAN-EPGTYDGICAEICGP-GH--SGMKFKAIATPDR 118 (205)
T ss_dssp EEECCS-SSEEEEEEECSCCST-TS--TTCCEEEEEESSH
T ss_pred EEEEeC-CCeEEEEEccccccc-ch--hhceEEEEEECCH
Confidence 888887 999999999853211 22 6788888887 44
No 146
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=35.70 E-value=1.4e+02 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=18.9
Q ss_pred ccCCCCcceeeeEEEeCCCCCceeeeecCC
Q 008071 170 FKEKGPTWTKKTYHYHNMQQPGNLWYHDHA 199 (579)
Q Consensus 170 ~i~PG~~~~~~~y~~~~~~~~Gt~wYH~H~ 199 (579)
.++||++. .|...|+..-.+|+|..+.=.
T Consensus 73 tl~pGE~~-~f~~~w~~~~~pG~Ytl~a~l 101 (120)
T 3isy_A 73 TLESGETY-DFSDVWKEVPEPGTYEVKVTF 101 (120)
T ss_dssp EECTTCEE-EEEEEESSCCCSEEEEEEEEE
T ss_pred EECCCCEE-EEEEEeCCCCCCccEEEEEEE
Confidence 47899999 334445532368999876544
No 147
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=31.71 E-value=24 Score=32.36 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 008071 3 IVERVLFLYLMFLAAARVMIS 23 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~~~~ 23 (579)
.++||.||.+++++++++++.
T Consensus 8 ~~~RR~Fl~~~~~~~~~~~a~ 28 (187)
T 2qjy_C 8 AGTRRDFLYYATAGAGAVATG 28 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 478999998876655544433
No 148
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=26.84 E-value=36 Score=31.09 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 008071 3 IVERVLFLYLMFLAAARV 20 (579)
Q Consensus 3 ~~~r~~~l~~~~~~~~~~ 20 (579)
.++||.||.+++++++++
T Consensus 19 ~~~RR~fl~~~~~~~~~~ 36 (185)
T 3cx5_E 19 ADKGRSYAYFMVGAMGLL 36 (185)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 479999998776555433
No 149
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=24.78 E-value=1.4e+02 Score=25.82 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=35.2
Q ss_pred CCcEEEECCcccCeEEe---cCc-----EEEEEEEecCCCeeEEEEEcCCCeEEEE
Q 008071 271 FGDAIIVNGKAWPRMTV---RRR-----KYRFRIINASNARFYRFFFTNGLRFIHV 318 (579)
Q Consensus 271 ~gd~~~VNG~~~P~~~v---~~~-----~~RlRllNa~~~~~~~l~l~~g~~f~vi 318 (579)
.|.++.+||+++-.+++ +|+ .+|+++.|.-+.+.+.-.+..++.+.+.
T Consensus 14 kG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~ 69 (138)
T 1iz6_A 14 PGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVP 69 (138)
T ss_dssp TTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred CCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeec
Confidence 37899999999877664 344 4999999988877776666545555554
No 150
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=21.76 E-value=2.2e+02 Score=24.41 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCcEEEECCcccCeEEec-------C-cEEEEEEEecCCCeeEEEEEcCCCeEEEE
Q 008071 271 FGDAIIVNGKAWPRMTVR-------R-RKYRFRIINASNARFYRFFFTNGLRFIHV 318 (579)
Q Consensus 271 ~gd~~~VNG~~~P~~~v~-------~-~~~RlRllNa~~~~~~~l~l~~g~~f~vi 318 (579)
.|.++.+||+++-.+++. + ..+|+++.|.-+.+.+.-.+..++.+.+.
T Consensus 18 ~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~ 73 (136)
T 2eif_A 18 VGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVP 73 (136)
T ss_dssp TTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEE
T ss_pred CCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccc
Confidence 378999999988776643 3 46999999988877776666556666653
Done!