BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008072
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 25/298 (8%)
Query: 17 LPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLI 76
+P L +L+ L+L N L+G+IP+ +G LS ++ L L +N G +P EL + L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 77 SLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK 136
+L G +P L T+L + + ++ +TG IP+ L++L IL S+N F+G
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 137 IPEFFGTLTELADLRLQGTLLEGPIPRS-----------FRALNKLEDLRIGDLSAE-DS 184
IP G L L L L G IP + F A + ++ + E
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 185 TLDFLESQ----KSLSILSLRN-CRVSGKI-----PDQLGTFAKLQLLDLSFNKLTGQIP 234
+ LE Q + L+ LS RN C ++ ++ + LD+S+N L+G IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 235 TSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLSM 291
+ + L L LG+N++SG +P + L LD+S N L G +P+ A L+M
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTM 702
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 130/280 (46%), Gaps = 32/280 (11%)
Query: 6 LKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRV 65
LK+ + +L +P EL ++ L L L N L G IP+ + +N+ ++SL N TG +
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 66 PTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 125
P +G L L L G +P ELG SL L ++++ G+IP +S +I
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKI 562
Query: 126 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE--- 182
+ N GK + + G LLE RS LN+L ++++
Sbjct: 563 ---AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS-EQLNRLSTRNPCNITSRVYG 618
Query: 183 ---------DSTLDFLE---------------SQKSLSILSLRNCRVSGKIPDQLGTFAK 218
+ ++ FL+ S L IL+L + +SG IPD++G
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 219 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 258
L +LDLS NKL G+IP ++ L+ L + L NNNLSG +P
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 139/335 (41%), Gaps = 82/335 (24%)
Query: 6 LKMRILVLLV--------TLPSELFMLR-KLMDLNLGQNVLNGSIPAEIGQ--LSNMQYL 54
LKMR L +L LP L L L+ L+L N +G I + Q + +Q L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 55 SLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIP 114
L N FTG++P L N ++L+SL G +P LG L+ L+ L + + + G IP
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 115 QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 174
QE +K+L L N TG+IP T L + L L G IP+
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK----------- 505
Query: 175 RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP 234
IG L ++L+IL L N SG IP +LG L LDL+ N G IP
Sbjct: 506 WIGRL-------------ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 235 TSL---------QDLSTLQYLYLGN------------------------NNLSGELPVNI 261
++ ++ +Y+Y+ N N LS P NI
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 262 IAP--------------NLIALDVSYNPLSGNLPR 282
+ +++ LD+SYN LSG +P+
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 136/310 (43%), Gaps = 59/310 (19%)
Query: 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXX 85
+L L + N ++G + ++ + N+++L + NNF+ +P LG+ + L L
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 86 XGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFF-GTL 144
G + + T L+ L I S+ G IP LKSL+ L ++N FTG+IP+F G
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 145 TELADLRLQGTLLEGPIPRSF----------------------RALNKLEDLRIGDLSAE 182
L L L G G +P F L K+ L++ DLS
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 183 DSTLDFLESQKSLSI------------------------------LSLRNCRVSGKIPDQ 212
+ + + ES +LS L L+N +GKIP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 213 LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDV 271
L ++L L LSFN L+G IP+SL LS L+ L L N L GE+P ++ L L +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 272 SYNPLSGNLP 281
+N L+G +P
Sbjct: 471 DFNDLTGEIP 480
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 54/258 (20%)
Query: 17 LPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLI 76
+PS L L ++L N L G IP IG+L N+ L L N+F+G +P ELG+ LI
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 77 SLXXXXXXXXGPLP----KELGKLTS-----LQQLYIDSSGVT----------------- 110
L G +P K+ GK+ + + +YI + G+
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 111 --------------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 150
G F N S+ L S N+ +G IP+ G++ L L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 151 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS---LRNCRVSG 207
L + G IP + L L I DLS+ ++ +L++L+ L N +SG
Sbjct: 659 NLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 208 KIPD--QLGTFAKLQLLD 223
IP+ Q TF + L+
Sbjct: 716 PIPEMGQFETFPPAKFLN 733
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 6 LKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRV 65
L M +L +P E+ + L LNLG N ++GSIP E+G L + L L N GR+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 66 PTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQL-YIDSSGVTG 111
P + LT L + GP+P E+G+ + ++++ G+ G
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCG 739
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 31 NLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLP 90
N+ V G +M +L + N +G +P E+G++ L L G +P
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 91 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEF--FGTLTELA 148
E+G L L L + S+ + G IPQ + L L + S+N +G IPE F T
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 149 DLRLQGTLLEGPIPR 163
L G L P+PR
Sbjct: 731 FLNNPG-LCGYPLPR 744
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 200 LRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLYLGNNNL---- 253
L N ++G + A L LDLS N L+G + TSL S L++L + +N L
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 254 --SGELPVNIIAPNLIALDVSYNPLSG 278
SG L +N +L LD+S N +SG
Sbjct: 140 KVSGGLKLN----SLEVLDLSANSISG 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 25/298 (8%)
Query: 17 LPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLI 76
+P L +L+ L+L N L+G+IP+ +G LS ++ L L +N G +P EL + L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 77 SLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK 136
+L G +P L T+L + + ++ +TG IP+ L++L IL S+N F+G
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 137 IPEFFGTLTELADLRLQGTLLEGPIPRS-----------FRALNKLEDLRIGDLSAE-DS 184
IP G L L L L G IP + F A + ++ + E
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 185 TLDFLESQ----KSLSILSLRN-CRVSGKI-----PDQLGTFAKLQLLDLSFNKLTGQIP 234
+ LE Q + L+ LS RN C ++ ++ + LD+S+N L+G IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 235 TSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLSM 291
+ + L L LG+N++SG +P + L LD+S N L G +P+ A L+M
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTM 705
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 130/280 (46%), Gaps = 32/280 (11%)
Query: 6 LKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRV 65
LK+ + +L +P EL ++ L L L N L G IP+ + +N+ ++SL N TG +
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 66 PTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 125
P +G L L L G +P ELG SL L ++++ G+IP +S +I
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKI 565
Query: 126 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE--- 182
+ N GK + + G LLE RS LN+L ++++
Sbjct: 566 ---AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS-EQLNRLSTRNPCNITSRVYG 621
Query: 183 ---------DSTLDFLE---------------SQKSLSILSLRNCRVSGKIPDQLGTFAK 218
+ ++ FL+ S L IL+L + +SG IPD++G
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 219 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 258
L +LDLS NKL G+IP ++ L+ L + L NNNLSG +P
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 139/335 (41%), Gaps = 82/335 (24%)
Query: 6 LKMRILVLLV--------TLPSELFMLR-KLMDLNLGQNVLNGSIPAEIGQ--LSNMQYL 54
LKMR L +L LP L L L+ L+L N +G I + Q + +Q L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 55 SLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIP 114
L N FTG++P L N ++L+SL G +P LG L+ L+ L + + + G IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 115 QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 174
QE +K+L L N TG+IP T L + L L G IP+
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK----------- 508
Query: 175 RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP 234
IG L ++L+IL L N SG IP +LG L LDL+ N G IP
Sbjct: 509 WIGRL-------------ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 235 TSL---------QDLSTLQYLYLGN------------------------NNLSGELPVNI 261
++ ++ +Y+Y+ N N LS P NI
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 262 IAP--------------NLIALDVSYNPLSGNLPR 282
+ +++ LD+SYN LSG +P+
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 136/310 (43%), Gaps = 59/310 (19%)
Query: 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXX 85
+L L + N ++G + ++ + N+++L + NNF+ +P LG+ + L L
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 86 XGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFF-GTL 144
G + + T L+ L I S+ G IP LKSL+ L ++N FTG+IP+F G
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 145 TELADLRLQGTLLEGPIPRSF----------------------RALNKLEDLRIGDLSAE 182
L L L G G +P F L K+ L++ DLS
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 183 DSTLDFLESQKSLSI------------------------------LSLRNCRVSGKIPDQ 212
+ + + ES +LS L L+N +GKIP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 213 LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDV 271
L ++L L LSFN L+G IP+SL LS L+ L L N L GE+P ++ L L +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 272 SYNPLSGNLP 281
+N L+G +P
Sbjct: 474 DFNDLTGEIP 483
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 54/258 (20%)
Query: 17 LPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLI 76
+PS L L ++L N L G IP IG+L N+ L L N+F+G +P ELG+ LI
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 77 SLXXXXXXXXGPLP----KELGKLTS-----LQQLYIDSSGVT----------------- 110
L G +P K+ GK+ + + +YI + G+
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 111 --------------------GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 150
G F N S+ L S N+ +G IP+ G++ L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 151 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILS---LRNCRVSG 207
L + G IP + L L I DLS+ ++ +L++L+ L N +SG
Sbjct: 662 NLGHNDISGSIPDE---VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 208 KIPD--QLGTFAKLQLLD 223
IP+ Q TF + L+
Sbjct: 719 PIPEMGQFETFPPAKFLN 736
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 6 LKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRV 65
L M +L +P E+ + L LNLG N ++GSIP E+G L + L L N GR+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 66 PTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQL-YIDSSGVTG 111
P + LT L + GP+P E+G+ + ++++ G+ G
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCG 742
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 31 NLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLP 90
N+ V G +M +L + N +G +P E+G++ L L G +P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 91 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEF--FGTLTELA 148
E+G L L L + S+ + G IPQ + L L + S+N +G IPE F T
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 149 DLRLQGTLLEGPIPR 163
L G L P+PR
Sbjct: 734 FLNNPG-LCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 31/262 (11%)
Query: 65 VPTELGNLTKLISLXXX-XXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 123
+P+ L NL L L GP+P + KLT L LYI + V+G+IP + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 124 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183
L S N +G +P +L L + G + G IP S+ + +KL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL------------ 175
Query: 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQL--LDLSFNKLTGQIPTSLQDLS 241
+ +++ R++GKIP TFA L L +DLS N L G
Sbjct: 176 -----------FTSMTISRNRLTGKIPP---TFANLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 242 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGL--SMNVIGSSIN 299
Q ++L N+L+ +L ++ NL LD+ N + G LP+ + S+NV +++
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 300 ANNLQDGKALGMMQCLHSNTKC 321
Q G ++N KC
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKC 303
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 23/147 (15%)
Query: 16 TLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNM-QYLSLGINNFTGRVPTELGNLT- 73
TLP + L L+ + N ++G+IP G S + +++ N TG++P NL
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 74 KLISL------------------XXXXXXXXGPLPKELGKL---TSLQQLYIDSSGVTGS 112
+ L L +LGK+ +L L + ++ + G+
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 113 IPQEFANLKSLRILWASDNLFTGKIPE 139
+PQ LK L L S N G+IP+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 91 KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADL 150
K +LT L+ LY++ + + F LK+L LW +DN F L LA+L
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 151 RLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 210
RL L+ PR F +L KL L +G + + SL L L N ++ ++P
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVP 173
Query: 211 DQLGTFAK---LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 251
+ G F K L+ L L N+L + L L+ L L N
Sbjct: 174 E--GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 72
L LP +F L L +L L +N L P L+ + YLSLG N L
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 73 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 131
T L L KLT L+ L +D++ + F +L+ L++L +N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 90 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
P L L L++D G+ P F L +L+ L+ DN + F L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G + R+FR L+ SL L L RV+
Sbjct: 157 LFLHGNRISSVPERAFRGLH------------------------SLDRLLLHQNRVAHVH 192
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 251
P +L L L N L+ +L L LQYL L +N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 100 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNL--------FTGKI-------------- 137
Q++++ + ++ F ++L ILW N+ FTG
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 138 ---PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS 194
P F L L L L L+ P FR L L+ L + D + + D +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 195 LSILSLRNCRVSGKIPDQLGTFAKLQLLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNN 251
L+ L L R+S +P++ F L LD L N++ P + +DL L LYL N
Sbjct: 154 LTHLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 252 NLSGELPVNIIAP 264
NLS LP +AP
Sbjct: 211 NLSA-LPTEALAP 222
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 24/162 (14%)
Query: 90 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
P L L L++D G+ P F L +L+ L+ DN + F L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G + R+FR L+ SL L L RV+
Sbjct: 158 LFLHGNRISSVPERAFRGLH------------------------SLDRLLLHQNRVAHVH 193
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 251
P +L L L N L+ +L L LQYL L +N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 100 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNL--------FTGKI-------------- 137
Q++++ + ++ F ++L ILW N+ FTG
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 138 ---PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS 194
P F L L L L L+ P FR L L+ L + D + + D +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 195 LSILSLRNCRVSGKIPDQLGTFAKLQLLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNN 251
L+ L L R+S +P++ F L LD L N++ P + +DL L LYL N
Sbjct: 155 LTHLFLHGNRIS-SVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 252 NLSGELPVNIIAP 264
NLS LP +AP
Sbjct: 212 NLSA-LPTEALAP 223
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 93/238 (39%), Gaps = 24/238 (10%)
Query: 50 NMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGV 109
NM+ L LG R +L NL KL L +L L LQ L + +
Sbjct: 334 NMRKLDLGT-----RCLEKLENLQKL-DLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 110 TGSIPQEFANLKSLRILWASDNLFTGKIPEF-FGTLTELADLRLQGTLLEGPIPRSFRAL 168
G Q F L +L + K P F L L L L LL+ L
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGL 447
Query: 169 NKLEDLRIGDLSAEDSTL---DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLS 225
L L + S +D ++ + L+ SL IL L +C + + LDLS
Sbjct: 448 QDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 226 FNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIA-------LDVSYNPL 276
N LTG +L L L YL + +NN + II P+L+ +++S+NPL
Sbjct: 508 HNSLTGDSMDALSHLKGL-YLNMASNN------IRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 397 DSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGER 456
D LY+T R + S Y E G+Y + L FAE+ S ++VFDV + G
Sbjct: 57 DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQS------QQKVFDVRVNGHT 110
Query: 457 VLRDLNIKKEAGGS 470
V++DL+I G S
Sbjct: 111 VVKDLDIFDRVGHS 124
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 397 DSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGER 456
D LY+T R + S Y E G+Y + L FAE+ S ++VFDV + G
Sbjct: 53 DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQS------QQKVFDVRVNGHT 106
Query: 457 VLRDLNIKKEAGGS 470
V++DL+I G S
Sbjct: 107 VVKDLDIFDRVGHS 120
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 10/180 (5%)
Query: 102 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI-PEFFGTLTELADLRLQGTLLEGP 160
L++ S+ + G F L L L SDN + P F L L L L L+
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 161 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQ 220
P FR L L+ L + D + + + +L+ L L R+ +P+ F L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEH--AFRGLH 176
Query: 221 LLD---LSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP--NLIALDVSYNP 275
LD L N + P + +DL L LYL NNLS LP ++ P +L L ++ NP
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNP 235
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 66/196 (33%), Gaps = 24/196 (12%)
Query: 90 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
P L L L++D G+ P F L +L+ L+ DN F L L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G + +FR L+ SL L L V+
Sbjct: 157 LFLHGNRIPSVPEHAFRGLH------------------------SLDRLLLHQNHVARVH 192
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIAL 269
P +L L L N L+ L L +LQYL L +N + + L
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKF 252
Query: 270 DVSYNPLSGNLPRNFA 285
S + + NLP+ A
Sbjct: 253 RGSSSEVPCNLPQRLA 268
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 56/161 (34%), Gaps = 25/161 (15%)
Query: 94 GKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL- 152
G S Q++++ + ++ F + ++L ILW N G F LT L L L
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 153 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQ 212
L P +FR L L L L C + P
Sbjct: 88 DNAQLRVVDPTTFRGLGHLH------------------------TLHLDRCGLQELGPGL 123
Query: 213 LGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 253
A LQ L L N L + +DL L +L+L N +
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 83
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 84 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 123
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 124 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 243
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 244 QYLYLGNNNLSGELPV 259
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 83
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 84 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 123
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 124 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 243
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 244 QYLYLGNNNLSGELPV 259
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 36/256 (14%)
Query: 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXX 83
L KL+D+ + N + P + L+N+ L+L N T P L NLT L L
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 84 XXXGPLPKELGKLTSLQQLYIDSSGVTGSIP--------------------QEFANLKSL 123
L LTSLQQL S+ VT P A L +L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 124 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183
L A++N + P G LT L +L L G L+ + +L L DL + + +
Sbjct: 198 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN--NQI 251
Query: 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 243
S L L L+ L L ++S P L L L+L+ N+L P S +L L
Sbjct: 252 SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Query: 244 QYLYLGNNNLSGELPV 259
YL L NN+S PV
Sbjct: 308 TYLTLYFNNISDISPV 323
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 91 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 225
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 281
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 259
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 282 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 327
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 91 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 170 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 224
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 280
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 259
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 281 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 326
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 91 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 220
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 259
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 322
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 91 KELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
K L LT+L++L I S+ V+ S+ + NL+SL A++N + P G LT L +
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL---IATNNQISDITP--LGILTNLDE 220
Query: 150 LRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209
L L G L+ + +L L DL + + + S L L L+ L L ++S
Sbjct: 221 LSLNGNQLKDI--GTLASLTNLTDLDLAN--NQISNLAPLSGLTKLTELKLGANQISNIS 276
Query: 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPV 259
P L L L+L+ N+L P S +L L YL L NN+S PV
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPV 322
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 97 TSLQQLYIDSSGVTGSIPQEFANLKSLRIL-WASDNLFTGKIPEF--FGTLTELADLRLQ 153
TSL+ L + +GV ++ F L+ L L + NL ++ EF F +L L L +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDIS 429
Query: 154 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL-DFLESQKSLSILSLRNCRVSGKIPDQ 212
T F L+ LE L++ S +++ L D ++L+ L L C++ P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 213 LGTFAKLQLLDLSFNKLTGQIPTSLQD-LSTLQYLYLGNNNLSGELP 258
+ + LQ+L+++ N+L +P + D L++LQ ++L N P
Sbjct: 490 FNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 209 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNL 266
+PD L LDLS +L PT+ LS+LQ L + +N L +P I +L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSL 520
Query: 267 IALDVSYNPLSGNLPR 282
+ + NP + PR
Sbjct: 521 QKIWLHTNPWDCSCPR 536
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 60/157 (38%), Gaps = 34/157 (21%)
Query: 14 LVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT 73
+ + + +F L L L N L +PAEI LSN++ L L N T
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS---------- 284
Query: 74 KLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF 133
LP ELG L+ Y + VT ++P EF NL +L+ L N
Sbjct: 285 ---------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Query: 134 TGKIPEFFGTLTELAD----LRLQGTLLEGPIPRSFR 166
+F LTE + L+ E P+P R
Sbjct: 329 EK---QFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 171 LEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 230
L +L+I ++SA DFL + L L ++ ++P ++ + L++LDLS N+LT
Sbjct: 231 LSNLQIFNISANIFKYDFL------TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 231 GQIPTSLQDLSTLQYLYLGNN 251
+P L L+Y Y +N
Sbjct: 284 S-LPAELGSCFQLKYFYFFDN 303
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 95 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG 154
K L +LY++ + +T +P E NL +LR+L S N T +P G+ +L
Sbjct: 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD 302
Query: 155 TLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLS--ILSLRNCRVSGKIPDQ 212
++ +P F L L+ L + E L L ++KS++ I LR+ R +P +
Sbjct: 303 NMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKIL-TEKSVTGLIFYLRDNRPEIPLPHE 360
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 37/251 (14%)
Query: 40 SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSL 99
++P EI + + L L N+ + + L L +L K L L
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 100 QQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPE-FFGTLTELADLRLQGTLLE 158
Q+LYI + + P ++L LRI DN K+P+ F L + + + G LE
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELRI---HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 159 --GPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTF 216
G P +F L KL LRI + D E+ L+ L L + ++ + L +
Sbjct: 161 NSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRY 216
Query: 217 AKLQLLDLSFNKLT-----------------------GQIPTSLQDLSTLQYLYLGNNNL 253
+KL L L N++ ++P L DL LQ +YL NN+
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
Query: 254 SGELPVNIIAP 264
+ ++ VN P
Sbjct: 277 T-KVGVNDFCP 286
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 196 SILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 255
++L L+N +S D L L L NK++ + L LQ LY+ N+L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 256 ELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVI 294
E+P N+ + +L+ L + N + +P+ G +MN I
Sbjct: 116 EIPPNLPS-SLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 92 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 151
+L +LQ L + SS + F +L SL L SDN + +FG L+ L L
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 152 LQGTLLEGP-IPRSFRALNKLEDLRIGDLS--AEDSTLDF--LESQKSLSI--LSLRNCR 204
L G + + F L L+ LRIG++ +E +DF L S L I LSLRN +
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164
Query: 205 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS----GELPVN 260
L + + L L ++ + LS+++YL L + NL+ LPV+
Sbjct: 165 -----SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219
Query: 261 IIA 263
++
Sbjct: 220 EVS 222
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 19/213 (8%)
Query: 12 VLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 71
V L P + F L L + L +P Q + ++ L+L N +P + +
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGL-XELPDTXQQFAGLETLTLARNPLRA-LPASIAS 148
Query: 72 LTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 131
L +L L LP+ L D+SG Q NL+SLR+ W
Sbjct: 149 LNRLRELSIRACPELTELPEPLAS--------TDASGEH----QGLVNLQSLRLEWTG-- 194
Query: 132 LFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES 191
+P L L L+++ + L P + L KLE+L + +A +
Sbjct: 195 --IRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 192 QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDL 224
+ L L L++C +P + +L+ LDL
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 92 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLR 151
+L +LQ L + SS + F +L SL L SDN + +FG L+ L L
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 130
Query: 152 LQGTLLEGP-IPRSFRALNKLEDLRIGDLS--AEDSTLDF--LESQKSLSI--LSLRNCR 204
L G + + F L L+ LRIG++ +E +DF L S L I LSLRN +
Sbjct: 131 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 190
Query: 205 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS----GELPVN 260
L + + L L ++ + LS+++YL L + NL+ LPV+
Sbjct: 191 -----SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 245
Query: 261 IIA 263
++
Sbjct: 246 EVS 248
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 64 RVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 123
R PTE L ++ LPK + + + +LY+D + T +P+E +N K L
Sbjct: 3 RCPTECTCLDTVVRCSNKGLKV---LPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHL 56
Query: 124 RILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183
++ S+N + + F +T+L L L L PR+F + L+ LR+ L D
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF---DGLKSLRLLSLHGND 113
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 189 LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 248
L + K L+++ L N R+S +L L LS+N+L P + L +L+ L L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109
Query: 249 GNNNLS 254
N++S
Sbjct: 110 HGNDIS 115
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 95 KLTSLQQLYIDSSGVT--GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 152
KLT L +L + S+G++ G Q SL+ L S N F G L +L L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 108
Query: 153 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDF---LESQKSLSILSLR-NCRVSGK 208
Q + L+ F L +L D+S + + F SL +L + N
Sbjct: 109 QHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 209 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 253
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 16/195 (8%)
Query: 216 FAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNP 275
KL L+L +N+L DL+ L L L NN L+ LP+ + +L LD Y
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF-DHLTQLDKLY-- 113
Query: 276 LSGNLPRNFAKGGLS--MNVIGSSINANNLQDGKA-----LGMMQCLHSNTKCSNKVPSS 328
L GN ++ G + +N N LQ A L +Q L +T VP
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 329 SFSIKCGGTQIASASGIEFD-DDSKTLEAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQ 387
+F + G Q + G +FD +TL + + + N+ N +P+G +
Sbjct: 174 AFD-RLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHESPDG---VTC 229
Query: 388 TDSQITGTLDSELYK 402
+D ++ T+ +E K
Sbjct: 230 SDGKVVRTVTNETLK 244
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLGINNF 61
L +LPS +F L KL +L L N L SIPA +L+N+Q LSL N
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 26/144 (18%)
Query: 117 FANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 176
F NL L++L S +L + F L L L LQG P+
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG----NHFPK------------- 463
Query: 177 GDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTS 236
G++ +S L++ L IL L C +S + + +DLS N+LT +S
Sbjct: 464 GNIQKTNS----LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS---SS 516
Query: 237 LQDLSTLQ--YLYLGNNNLSGELP 258
++ LS L+ YL L +N++S LP
Sbjct: 517 IEALSHLKGIYLNLASNHISIILP 540
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 90 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
P L L++LY+ S +P++ K+L+ L +N T F L ++
Sbjct: 93 PGAFAPLVKLERLYL-SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 150 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDL-----------SAEDSTLD--------- 187
+ L L+ G +F+ + KL +RI D S + LD
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 188 -FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 246
L+ +L+ L L +S L L+ L L+ NKL ++P L D +Q +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 247 YLGNNNLSG 255
YL NNN+S
Sbjct: 269 YLHNNNISA 277
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 193 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 252
+S+ L L + +++ P L + LQ+L L N++T P L L+ LQYL +GNN
Sbjct: 113 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQ 168
Query: 253 LSGELPV 259
++ P+
Sbjct: 169 VNDLTPL 175
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXG 87
+DLN N+ + + L+N+QYLS+G N P L NL+KL +L
Sbjct: 142 LDLNQITNI------SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISD 193
Query: 88 PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 126
P L L +L ++++ + ++ P ANL +L I+
Sbjct: 194 ISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIV 228
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 90 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149
P L L++LY+ S +P++ K+L+ L +N T F L ++
Sbjct: 93 PGAFAPLVKLERLYL-SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 150 LRLQGTLLE--GPIPRSFRALNKLEDLRIGDL-----------SAEDSTLD--------- 187
+ L L+ G +F+ + KL +RI D S + LD
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA 209
Query: 188 -FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 246
L+ +L+ L L +S L L+ L L+ NKL ++P L D +Q +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 247 YLGNNNLSG 255
YL NNN+S
Sbjct: 269 YLHNNNISA 277
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 99 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 147
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264
T L +LD+SFN+LT +L+ L LQ LYL N L LP ++ P
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 181 AEDSTLDFLESQKSLSILSLRNCRVSGKI--------------PDQLGTFAKLQLLDLSF 226
AE+ T ++E+Q+ L L LR+ R G++ PD +L L+LSF
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89
Query: 227 NKLTGQIPTSLQDLSTLQYLYLGNNNL 253
N L ++Q LS LQ L L N L
Sbjct: 90 NALESLSWKTVQGLS-LQELVLSGNPL 115
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 129 SDNLFTGKIPEFFGTLTELADLRLQGTLLE-----GPIPRSFRALNKLE--------DLR 175
S+NL T + E G LTEL L LQ L+ + ++L +L+ D +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 176 IGDLSAEDSTLDFLESQKSLS------------ILSLRNCRVSGKIPDQLGTFAKLQLLD 223
GD S S L S L+ +L L + ++ IP Q+ LQ L+
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELN 450
Query: 224 LSFNKLTGQIPTSLQD-LSTLQYLYLGNNNLSGELP 258
++ N+L +P + D L++LQ ++L N P
Sbjct: 451 VASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 193 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK-LTG-QIPTSLQDLS------TLQ 244
K L+ + + NC K+P L + QL++++ N+ ++G Q+ Q L+ +Q
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 245 YLYLGNNNLSGELPVNI---IAPNLIALDVSYNPLSGNLP 281
+Y+G NNL PV L L+ YN L G LP
Sbjct: 309 IIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLP 347
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 218 KLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPL 276
K+Q++ + +N L T + TSLQ L L N L G+LP L +L+++YN +
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 277 SGNLPRNFAKGGLSMNVIGSSINANNLQ 304
+ +P NF G + V S N L+
Sbjct: 366 T-EIPANFC--GFTEQVENLSFAHNKLK 390
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 72
L +LP+ +F L L +L L +N L +L+N+ YL+L N L
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 73 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 132
T L L KLT L+ L + + + F L SL+ +W DN
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Query: 133 FTGKIP 138
+ P
Sbjct: 217 WDCTCP 222
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 45 IGQLSNMQYLSLGINNFTG-RVPTELGNLTKLISLXXXXXXXXGPLPKEL-GKLTSLQQL 102
I L N++YL+LG N EL NLT LI LP + KLT+L++L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLI----LTGNQLQSLPNGVFDKLTNLKEL 114
Query: 103 YIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162
+ + + F L +L L + N F LT L +L L L+
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 163 RSFRALNKLEDLRI 176
F L +L+DLR+
Sbjct: 175 GVFDKLTQLKDLRL 188
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 193 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 252
+S+ L L + +++ P L + LQ+L L N++T P L L+ LQYL +GN
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162
Query: 253 LSGELPV 259
+S P+
Sbjct: 163 VSDLTPL 169
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 16/195 (8%)
Query: 216 FAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNP 275
KL L+L +N+L DL+ L L L NN L+ LP+ + +L LD Y
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF-DHLTQLDKLY-- 113
Query: 276 LSGNLPRNFAKGGLS--MNVIGSSINANNLQDGKA-----LGMMQCLHSNTKCSNKVPSS 328
L GN ++ G + +N N LQ A L +Q L +T VP
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 329 SFSIKCGGTQIASASGIEFD-DDSKTLEAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQ 387
+F + G Q + G +FD + L + + + N+ N +P+G +
Sbjct: 174 AFD-RLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDG---VTC 229
Query: 388 TDSQITGTLDSELYK 402
+D ++ T+ +E K
Sbjct: 230 SDGKVVRTVTNETLK 244
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLGINNF 61
L +LPS +F L KL +L L N L SIPA +L+N+Q LSL N
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 202 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 261
+CR G Q+L L N++T P L L+ LYLG+N L G LPV +
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 262 IAP--NLIALDVSYNPLS 277
L LD+ N L+
Sbjct: 84 FDSLTQLTVLDLGTNQLT 101
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%)
Query: 95 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG 154
+LTSL QLY+ + + F L SL L S N F LT+L +L L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 155 TLLEGPIPRSFRALNKLEDLRI 176
L+ F L +L+DLR+
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRL 131
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNL 72
L +LP+ +F L L L LG N L +L+++ YL+L N L
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 73 TKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 132
T+L L KLT L+ L + + + F L SL+ +W DN
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Query: 133 FTGKIP 138
+ P
Sbjct: 160 WDCTCP 165
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 219 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL---PVNIIAPNLIA 268
L+ + + N+ TG+IP + ++ + + Y+Y + L G+L PV I A L+A
Sbjct: 302 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLA 354
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 219 LQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL---PVNIIAPNLIA 268
L+ + + N+ TG+IP + ++ + + Y+Y + L G+L PV I A L+A
Sbjct: 302 LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLA 354
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 168 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 227
LN+++ + +L+A TL+ L Q + V G++ FAKL+ LDLS N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQV-----VFAKLKTLDLSSN 201
Query: 228 KLTGQIPTSLQDLSTLQYLYLGNNNL 253
KL P Q + + ++ L NN L
Sbjct: 202 KLAFMGP-EFQSAAGVTWISLRNNKL 226
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 98 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 157
++Q+LY+ + + P F N+ L +L N + F +L L + L
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 158 EGPIPRSFRALNKLEDLRIGD--LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 215
E +F+A L++L++ L+ D +L I SL + VS + L
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----------IPSLFHANVSYNLLSTLAI 203
Query: 216 FAKLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 274
++ LD S N + + P +++ L L L +NNL+ + + P L+ +D+SYN
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL-LNYPGLVEVDLSYN 258
Query: 275 PLSGNLPRNFAK 286
L + F K
Sbjct: 259 ELEKIMYHPFVK 270
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 209 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 253
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 183 NKIQSIYCTDLRVLHQM 199
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 209 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 253
+PD L LDLS +L PT+ LS+LQ L + +NN
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 160 NKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 161 NKIQSIYCTDLRVLHQM 177
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 159 NKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 160 NKIQSIYCTDLRVLHQM 176
>pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From
Azorhizobium Caulinodans
Length = 377
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 131 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA----EDSTL 186
+FTG F L D+ L+ +L PI R + +++ + +G A E + L
Sbjct: 58 EVFTGTPEAAFSAL----DIYLRPLILGAPIKRVRELMARMDKMLVGHGEAKAAVEMALL 113
Query: 187 DFLESQKSLSILSLRNCRVSGKIP 210
D L LS+ L RV +IP
Sbjct: 114 DILGKATGLSVADLLGGRVRDRIP 137
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 34 QNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKEL 93
QN+ S+PA G ++ Q L L N T P +L L L
Sbjct: 20 QNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
Query: 94 GKLTSLQQLYIDSSGVTGSIPQ-EFANLKSLRILWASDN 131
KLT L QL ++ + + SIP+ F NLKSL ++ +N
Sbjct: 78 DKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 54 LSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDSSGVTGSI 113
L+L N TG V L K++ L +PK++ L +LQ+L + S+ +
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS---IPKDVTHLQALQELNVASNQLKSVP 489
Query: 114 PQEFANLKSLRILWASDNLFTGKIP 138
F L SL+ +W DN + P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 26/123 (21%)
Query: 115 QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG--PIP-----RSFRA 167
Q F NLK L + S N + P LT+L +L + L+ IP R F
Sbjct: 60 QFFTNLKELHL---SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114
Query: 168 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 227
N+L D D L K+L ILS+RN ++ + LG +KL++LDL N
Sbjct: 115 NNELRDT------------DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160
Query: 228 KLT 230
++T
Sbjct: 161 EIT 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG-KIPEFFGTLTELADLRLQG 154
L+SLQ+L + + +LK+L+ L + NL K+PE+F LT L L L
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 155 TLLEGPIPRSFRALNKL 171
++ R L+++
Sbjct: 161 NKIQSIYCTDLRVLHQM 177
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT 155
T LQ+L + ++ + G +P L L+ L S N F L L ++G
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 156 LLEGPIPRSFRALNKLEDLRIGDLS-----AEDSTLDFLESQKSLSILSLRNCRVSGKIP 210
+ + L KL +L+ DLS A D L++ L L+L + G
Sbjct: 333 V--KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 211 DQLGTFAKLQLLDLSFNKLTGQIPTS-LQDLSTLQYLYL-------GNNNLSGELPV 259
+L+LLDL+F +L P S Q+L LQ L L N +L LPV
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 168 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN 227
LN+++ + +L+A TL+ L Q + V G++ FAKL+ LDLS N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY------DVKGQV-----VFAKLKTLDLSSN 201
Query: 228 KLTGQIPTSLQDLSTLQYLYLGNNNL 253
KL P Q + + ++ L NN L
Sbjct: 202 KLAFMGP-EFQSAAGVTWISLRNNKL 226
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 29/213 (13%)
Query: 92 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN--------LFTG-------K 136
E L++L ++ + V+ P F NL +LR L N +FTG
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 137 IPE---------FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 187
I E F L L L + L R+F LN LE L + + +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 188 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLS-FNKLTGQIPTSLQDLSTLQYL 246
L L +L LR+ ++ +L++L++S + L P L L+ L L
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSL 229
Query: 247 YLGNNNLSG--ELPVNIIAPNLIALDVSYNPLS 277
+ + NL+ L V + L L++SYNP+S
Sbjct: 230 SITHCNLTAVPYLAVRHLV-YLRFLNLSYNPIS 261
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 98 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 157
++Q+LY+ + + P F N+ L +L N + F +L L + L
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 158 EGPIPRSFRALNKLEDLRIGD--LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 215
E +F+A L++L++ L+ D +L I SL + VS + L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----------IPSLFHANVSYNLLSTLAI 209
Query: 216 FAKLQLLDLSFNKL-TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 274
++ LD S N + + P +++ L L L +NNL+ + + P L+ +D+SYN
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNLTDTAWL-LNYPGLVEVDLSYN 264
Query: 275 PLSGNLPRNFAK 286
L + F K
Sbjct: 265 ELEKIMYHPFVK 276
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 222 LDLSFNKLTGQIPTSLQDLSTLQYLYLGNN-----NLSGELPVNIIAPNLIALDVSYNPL 276
+DLS+N+L + + L+ LY+ NN NL G+ P+ P L LD+S+N L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ-PI----PTLKVLDLSHNHL 313
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 30/166 (18%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPA------------EIGQLS----------- 49
L T+P++ F L KL +L L N + SIP+ ++G+L
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 50 ---NMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXGPLPKELGKLTSLQQLYIDS 106
N++YL+LG+ N +P L L +L L P LTSL++L++
Sbjct: 154 GLVNLRYLNLGMCNLKD-IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 152
+ V F +LKSL L S N + F L L + L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|2BE1|A Chain A, Structure Of The Compact Lumenal Domain Of Yeast Ire1
pdb|2BE1|B Chain B, Structure Of The Compact Lumenal Domain Of Yeast Ire1
Length = 339
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 374 NFISNPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKY---RIDLHFA 430
N + N +G I + + TG++ + +Y ++ + +G G +NG + +D
Sbjct: 99 NIVVNDSGK--IVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156
Query: 431 E-ITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 489
E I +++ + +G+ +F+ L I G S T++ NV + + +
Sbjct: 157 EKIKLQECENMIVIGKTIFE-----------LGIHSYDGASYNVTYSTWQQNVLDVPLAL 205
Query: 490 HFFWAGKGTCCIPFQ 504
++ G C PF+
Sbjct: 206 QNTFSKDGMCIAPFR 220
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 36/169 (21%)
Query: 14 LVTLPSELF-MLRKLMDLNLGQNVLNGSIPA------------EIGQLS----------- 49
L T+P++ F L KL +L L N + SIP+ ++G+L
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 50 ---NMQYLSLGINNFTGRVPTELGNLTKLISLXXXXXXXXG---PLPKELGKLTSLQQLY 103
N++YL+LG+ N ++ NLT L+ L P LTSL++L+
Sbjct: 154 GLVNLRYLNLGMCNLK-----DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 104 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 152
+ + V F +LKSL L S N + F L L + L
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 145 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 199
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 228
Query: 200 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 257
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 285
Query: 258 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 317
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 286 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 333
Query: 318 NTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNRWAVSNTGNFIS 377
N +P ++ G + K L ++ +TS R + T F+S
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINL------------KYLSLSNSFTSL--RTLTNET--FVS 377
Query: 378 NPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITME-D 436
+ PL+I L+ K ++I + + G LE +DL EI E
Sbjct: 378 LAHSPLHI----------LNLTKNKISKIESDAFSWLG-HLE----VLDLGLNEIGQELT 422
Query: 437 SLSWKGLGRRVFDVYIQGERVLR 459
W+GL +F++Y+ + L+
Sbjct: 423 GQEWRGL-ENIFEIYLSYNKYLQ 444
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 145 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 199
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 238
Query: 200 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 257
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 295
Query: 258 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 317
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 296 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 343
Query: 318 NTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNRWAVSNTGNFIS 377
N +P ++ G + K L ++ +TS R + T F+S
Sbjct: 344 LNMEDNDIPGIKSNMFTGLINL------------KYLSLSNSFTSL--RTLTNET--FVS 387
Query: 378 NPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITME-D 436
+ PL+I L+ K ++I + + G LE +DL EI E
Sbjct: 388 LAHSPLHI----------LNLTKNKISKIESDAFSWLG-HLE----VLDLGLNEIGQELT 432
Query: 437 SLSWKGLGRRVFDVYIQGERVLR 459
W+GL +F++Y+ + L+
Sbjct: 433 GQEWRGL-ENIFEIYLSYNKYLQ 454
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 57/323 (17%)
Query: 145 TELADLRLQGTLLEGPIPRSFRALNKL-----EDLRIGDLSAEDSTLDFLESQKSLSILS 199
+ L L L ++ P F A+ +L ++++G E L+ + S+ LS
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLS 233
Query: 200 LRNCRVSGKIPDQ-LG-TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL 257
L N ++S LG + L +LDLS+N L S L L+Y +L NN+
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ--- 290
Query: 258 PVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSINANNLQDGKALGMMQCLHS 317
++ + +L L +N NL R+F K +S+ + D + ++CL
Sbjct: 291 --HLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKI-------DDFSFQWLKCLEH 338
Query: 318 NTKCSNKVPSSSFSIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNRWAVSNTGNFIS 377
N +P ++ G + K L ++ +TS R + T F+S
Sbjct: 339 LNMEDNDIPGIKSNMFTGLINL------------KYLSLSNSFTSL--RTLTNET--FVS 382
Query: 378 NPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLENGKYRIDLHFAEITME-D 436
+ PL+I L+ K ++I + + G LE +DL EI E
Sbjct: 383 LAHSPLHI----------LNLTKNKISKIESDAFSWLG-HLE----VLDLGLNEIGQELT 427
Query: 437 SLSWKGLGRRVFDVYIQGERVLR 459
W+GL +F++Y+ + L+
Sbjct: 428 GQEWRGL-ENIFEIYLSYNKYLQ 449
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 93 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 145
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 28 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 80
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 93 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 145
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 29 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 81
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 93 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 152
G+L L +L + + +TG P F ++ L +N + F L +L L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 153 QGTLLEGPIPRSFRALNKLEDLRIG 177
+ +P SF LN L L +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 93 LGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT 145
LG L + L+ SG TG+ Q +K I WAS NL + E++ +
Sbjct: 29 LGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,852,653
Number of Sequences: 62578
Number of extensions: 713381
Number of successful extensions: 2221
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 254
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)