Query 008072
Match_columns 579
No_of_seqs 518 out of 4885
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 19:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-36 3.2E-41 353.6 27.9 296 2-299 119-417 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-34 4.6E-39 335.5 23.5 298 2-299 189-488 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.7E-29 3.7E-34 254.3 1.2 297 2-299 103-429 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.5E-29 1.9E-33 249.3 3.6 294 4-299 81-405 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.6E-28 5.5E-33 247.2 -2.5 292 3-300 9-305 (1255)
6 PF11721 Malectin: Di-glucose 99.9 3.6E-26 7.8E-31 208.8 7.2 169 329-514 2-174 (174)
7 KOG0444 Cytoskeletal regulator 99.9 1.2E-26 2.6E-31 235.2 -3.8 267 3-276 34-303 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1E-25 2.2E-30 218.2 -8.5 290 3-310 70-406 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.6E-23 3.5E-28 222.1 -0.1 291 1-298 45-488 (1081)
10 PLN03210 Resistant to P. syrin 99.9 1.2E-20 2.6E-25 221.2 22.6 268 16-295 579-878 (1153)
11 PLN03210 Resistant to P. syrin 99.8 3.9E-20 8.4E-25 216.8 22.3 272 17-299 550-859 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 1E-23 2.2E-28 204.4 -8.4 266 22-299 42-310 (565)
13 PRK15387 E3 ubiquitin-protein 99.8 3E-20 6.6E-25 203.2 16.7 254 3-299 203-458 (788)
14 cd00116 LRR_RI Leucine-rich re 99.8 9.4E-21 2E-25 192.8 3.0 272 5-276 2-319 (319)
15 PRK15370 E3 ubiquitin-protein 99.8 2.1E-19 4.7E-24 197.7 13.5 244 3-277 180-428 (754)
16 PRK15387 E3 ubiquitin-protein 99.8 4E-19 8.7E-24 194.4 14.1 242 2-284 223-465 (788)
17 KOG0618 Serine/threonine phosp 99.8 9E-21 1.9E-25 201.4 -1.0 264 3-275 221-487 (1081)
18 KOG4237 Extracellular matrix p 99.8 4E-21 8.6E-26 186.3 -4.9 276 26-302 68-362 (498)
19 PRK15370 E3 ubiquitin-protein 99.8 9.1E-19 2E-23 192.8 12.9 245 25-299 178-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.8 3.3E-19 7E-24 181.5 4.5 252 2-253 24-319 (319)
21 KOG4237 Extracellular matrix p 99.7 8.6E-20 1.9E-24 177.1 -4.0 274 2-277 68-359 (498)
22 PLN03150 hypothetical protein; 99.7 6.1E-17 1.3E-21 177.7 14.4 111 395-520 249-363 (623)
23 KOG0617 Ras suppressor protein 99.7 8.9E-19 1.9E-23 151.6 -4.5 158 21-183 29-187 (264)
24 KOG0617 Ras suppressor protein 99.7 1.4E-18 3.1E-23 150.3 -4.1 161 2-168 34-195 (264)
25 PF12819 Malectin_like: Carboh 99.6 2.9E-15 6.4E-20 152.5 11.4 110 395-519 231-347 (347)
26 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.6E-18 140.6 -2.5 194 25-252 75-271 (722)
27 COG4886 Leucine-rich repeat (L 99.3 5.1E-12 1.1E-16 132.5 6.9 200 29-237 97-297 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.3E-16 130.2 7.5 202 53-263 97-299 (394)
29 PLN03150 hypothetical protein; 99.2 3.5E-11 7.6E-16 132.4 9.2 110 26-135 419-529 (623)
30 KOG1909 Ran GTPase-activating 99.2 8.2E-12 1.8E-16 120.6 2.9 236 19-254 24-311 (382)
31 KOG1909 Ran GTPase-activating 99.2 5.3E-12 1.1E-16 121.9 1.6 235 43-277 24-311 (382)
32 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 3.1E-17 132.8 -3.6 190 5-203 79-270 (722)
33 KOG3207 Beta-tubulin folding c 99.1 6.5E-12 1.4E-16 124.4 0.1 207 23-255 119-340 (505)
34 KOG3207 Beta-tubulin folding c 99.1 3.2E-11 6.9E-16 119.6 1.8 207 71-278 119-340 (505)
35 KOG4658 Apoptotic ATPase [Sign 99.1 8.8E-11 1.9E-15 132.1 5.1 106 25-131 545-652 (889)
36 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 103.6 3.6 109 21-134 15-126 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 5.2E-10 1.1E-14 126.0 5.2 254 21-280 519-786 (889)
38 KOG1259 Nischarin, modulator o 98.9 2.5E-10 5.4E-15 108.0 2.1 223 48-279 181-414 (490)
39 KOG1259 Nischarin, modulator o 98.9 2E-10 4.3E-15 108.6 0.5 129 98-232 285-414 (490)
40 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.5E-14 98.3 5.6 81 143-224 62-147 (175)
41 KOG0531 Protein phosphatase 1, 98.9 1.8E-10 3.8E-15 121.3 -1.9 126 25-157 72-198 (414)
42 PF12819 Malectin_like: Carboh 98.7 1.1E-07 2.3E-12 97.2 12.8 112 396-522 46-164 (347)
43 KOG0531 Protein phosphatase 1, 98.7 1.2E-09 2.6E-14 115.1 -2.8 128 47-181 70-198 (414)
44 PF13855 LRR_8: Leucine rich r 98.7 8.6E-09 1.9E-13 76.8 2.5 59 26-84 2-60 (61)
45 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.8E-13 75.8 2.7 61 193-253 1-61 (61)
46 KOG3593 Predicted receptor-lik 98.6 2.5E-08 5.4E-13 93.4 4.6 117 329-475 61-180 (355)
47 KOG2982 Uncharacterized conser 98.6 1.7E-08 3.6E-13 95.8 2.0 119 15-133 35-158 (418)
48 KOG2120 SCF ubiquitin ligase, 98.5 7.8E-09 1.7E-13 98.0 -4.0 176 74-251 186-373 (419)
49 KOG2120 SCF ubiquitin ligase, 98.4 6E-09 1.3E-13 98.8 -5.1 236 4-244 139-390 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.4 1.2E-07 2.5E-12 89.1 2.1 235 21-255 26-317 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.3 2.3E-07 4.9E-12 87.2 2.3 234 45-278 26-317 (388)
52 KOG2982 Uncharacterized conser 98.3 1.5E-07 3.2E-12 89.5 0.5 203 23-247 69-285 (418)
53 KOG1859 Leucine-rich repeat pr 98.3 2.4E-08 5.2E-13 105.1 -6.2 126 145-277 164-292 (1096)
54 KOG4579 Leucine-rich repeat (L 98.2 1.4E-07 3E-12 79.7 -2.2 104 27-134 29-136 (177)
55 KOG1859 Leucine-rich repeat pr 98.2 3.8E-08 8.3E-13 103.6 -6.9 125 75-205 166-291 (1096)
56 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.4E-12 78.7 -2.3 131 147-281 29-163 (177)
57 PRK15386 type III secretion pr 98.0 1.9E-05 4E-10 80.7 8.6 32 217-251 156-187 (426)
58 PRK15386 type III secretion pr 97.9 8.5E-05 1.8E-09 76.0 10.9 54 72-131 51-104 (426)
59 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.4E-10 89.1 3.8 149 73-223 122-281 (699)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.2E-10 53.2 3.6 36 26-62 2-37 (44)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 2.9E-10 88.4 2.2 134 25-160 122-265 (699)
62 PF12799 LRR_4: Leucine Rich r 97.7 4.3E-05 9.4E-10 52.3 3.6 36 218-254 2-37 (44)
63 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 65.3 5.5 125 27-155 21-150 (233)
64 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.6E-09 64.3 5.3 36 215-250 111-149 (233)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.4E-09 68.4 1.4 113 40-154 34-152 (260)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00023 4.9E-09 67.4 2.0 110 65-178 35-152 (260)
67 PF13306 LRR_5: Leucine rich r 97.0 0.0016 3.5E-08 56.2 6.0 104 21-129 8-111 (129)
68 KOG4341 F-box protein containi 96.9 6.1E-05 1.3E-09 75.3 -3.9 36 23-58 162-199 (483)
69 PF13306 LRR_5: Leucine rich r 96.9 0.002 4.4E-08 55.6 5.7 84 44-130 7-90 (129)
70 KOG2123 Uncharacterized conser 96.8 0.0001 2.2E-09 70.0 -3.6 99 24-126 18-122 (388)
71 KOG1947 Leucine rich repeat pr 96.6 0.00035 7.6E-09 75.1 -1.1 234 23-276 186-439 (482)
72 KOG1947 Leucine rich repeat pr 96.5 0.00049 1.1E-08 74.0 -1.0 17 213-229 358-374 (482)
73 PF04478 Mid2: Mid2 like cell 96.2 0.0053 1.2E-07 53.0 4.1 23 531-553 46-68 (154)
74 KOG2123 Uncharacterized conser 96.2 0.00042 9.1E-09 65.9 -3.2 61 143-205 39-100 (388)
75 KOG4341 F-box protein containi 96.1 0.0004 8.6E-09 69.7 -3.7 251 2-254 165-439 (483)
76 PF08693 SKG6: Transmembrane a 96.1 0.0091 2E-07 39.0 3.6 30 532-561 10-39 (40)
77 PTZ00382 Variant-specific surf 95.3 0.02 4.3E-07 46.4 3.5 23 532-554 64-86 (96)
78 KOG4308 LRR-containing protein 95.0 0.00048 1E-08 73.1 -8.6 83 75-157 89-184 (478)
79 PF01102 Glycophorin_A: Glycop 94.6 0.0095 2.1E-07 50.1 -0.1 32 532-563 62-93 (122)
80 PF00560 LRR_1: Leucine Rich R 94.4 0.014 3.1E-07 33.1 0.5 12 51-62 2-13 (22)
81 PF00560 LRR_1: Leucine Rich R 94.2 0.027 5.9E-07 32.0 1.3 18 27-45 2-19 (22)
82 KOG4308 LRR-containing protein 94.1 0.0005 1.1E-08 72.9 -10.9 181 27-207 89-304 (478)
83 PF01034 Syndecan: Syndecan do 93.6 0.022 4.8E-07 41.4 0.2 30 535-564 10-40 (64)
84 KOG0473 Leucine-rich repeat pr 92.9 0.0017 3.7E-08 60.3 -7.9 82 49-133 42-123 (326)
85 PF06697 DUF1191: Protein of u 91.0 0.38 8.2E-06 46.6 5.1 25 529-553 208-232 (278)
86 PHA03265 envelope glycoprotein 90.6 0.14 3.1E-06 50.2 1.9 34 533-569 350-383 (402)
87 PF13504 LRR_7: Leucine rich r 89.9 0.23 5E-06 26.1 1.5 8 268-275 5-12 (17)
88 KOG0473 Leucine-rich repeat pr 88.8 0.0071 1.5E-07 56.3 -8.0 86 21-109 38-123 (326)
89 PF02480 Herpes_gE: Alphaherpe 88.0 0.42 9.2E-06 50.2 3.3 25 427-457 271-295 (439)
90 KOG3864 Uncharacterized conser 87.8 0.11 2.4E-06 47.6 -1.0 78 147-224 103-183 (221)
91 PF08374 Protocadherin: Protoc 87.3 0.73 1.6E-05 42.4 3.9 21 531-551 35-55 (221)
92 PF02439 Adeno_E3_CR2: Adenovi 86.4 0.43 9.3E-06 30.8 1.4 18 536-553 5-22 (38)
93 KOG3864 Uncharacterized conser 83.6 0.17 3.6E-06 46.5 -2.0 81 170-250 102-185 (221)
94 PF12877 DUF3827: Domain of un 82.1 1.6 3.5E-05 46.9 4.2 32 530-561 266-297 (684)
95 smart00369 LRR_TYP Leucine-ric 82.1 0.94 2E-05 26.6 1.5 13 50-62 3-15 (26)
96 smart00370 LRR Leucine-rich re 82.1 0.94 2E-05 26.6 1.5 13 50-62 3-15 (26)
97 PF01034 Syndecan: Syndecan do 80.8 0.5 1.1E-05 34.5 -0.0 30 532-561 11-40 (64)
98 smart00369 LRR_TYP Leucine-ric 80.7 1.6 3.4E-05 25.6 2.1 13 218-230 3-15 (26)
99 smart00370 LRR Leucine-rich re 80.7 1.6 3.4E-05 25.6 2.1 13 218-230 3-15 (26)
100 PF03302 VSP: Giardia variant- 79.9 1.9 4E-05 45.1 3.8 24 531-554 364-387 (397)
101 PF13516 LRR_6: Leucine Rich r 77.2 0.37 8E-06 27.8 -1.3 14 25-38 2-15 (24)
102 PF12768 Rax2: Cortical protei 77.0 5.6 0.00012 39.3 6.0 18 529-546 222-239 (281)
103 PF15102 TMEM154: TMEM154 prot 72.3 4.7 0.0001 35.0 3.6 11 536-546 58-68 (146)
104 smart00364 LRR_BAC Leucine-ric 72.3 2.6 5.7E-05 24.9 1.4 17 264-281 2-18 (26)
105 PF03229 Alpha_GJ: Alphavirus 71.9 2 4.4E-05 35.1 1.2 30 532-561 81-110 (126)
106 PF12191 stn_TNFRSF12A: Tumour 71.8 1.4 2.9E-05 37.0 0.2 30 536-565 80-109 (129)
107 PF05808 Podoplanin: Podoplani 71.5 1.3 2.8E-05 39.0 0.0 29 532-560 127-155 (162)
108 PF13908 Shisa: Wnt and FGF in 71.4 3.3 7.2E-05 37.9 2.7 13 534-546 79-91 (179)
109 PF01299 Lamp: Lysosome-associ 71.3 1.6 3.6E-05 43.8 0.7 29 535-563 271-300 (306)
110 PF07213 DAP10: DAP10 membrane 69.5 1.6 3.6E-05 33.3 0.2 28 532-559 32-59 (79)
111 PF15069 FAM163: FAM163 family 66.8 7.7 0.00017 33.5 3.7 22 534-555 6-27 (143)
112 PF08693 SKG6: Transmembrane a 63.9 4.4 9.5E-05 26.7 1.3 34 531-564 5-39 (40)
113 KOG3763 mRNA export factor TAP 63.4 4.2 9.1E-05 43.2 1.8 36 192-227 217-254 (585)
114 PF13908 Shisa: Wnt and FGF in 63.4 6.5 0.00014 36.0 2.9 21 533-553 74-94 (179)
115 PF02439 Adeno_E3_CR2: Adenovi 60.9 3.3 7.1E-05 26.8 0.3 28 532-560 5-32 (38)
116 smart00365 LRR_SD22 Leucine-ri 60.3 6.1 0.00013 23.4 1.4 14 49-62 2-15 (26)
117 smart00368 LRR_RI Leucine rich 59.5 7.1 0.00015 23.4 1.6 14 264-277 2-15 (28)
118 PF06365 CD34_antigen: CD34/Po 56.4 17 0.00037 33.7 4.3 29 533-561 99-128 (202)
119 KOG4242 Predicted myosin-I-bin 56.2 45 0.00099 35.1 7.6 36 219-254 415-453 (553)
120 PTZ00370 STEVOR; Provisional 52.5 6.4 0.00014 38.2 0.9 7 556-562 276-282 (296)
121 TIGR01478 STEVOR variant surfa 52.3 6.9 0.00015 37.9 1.1 7 556-562 280-286 (295)
122 PF04478 Mid2: Mid2 like cell 50.0 8.2 0.00018 33.8 1.1 26 529-555 48-73 (154)
123 PF05454 DAG1: Dystroglycan (D 50.0 5.4 0.00012 39.3 0.0 9 535-543 149-157 (290)
124 PF05393 Hum_adeno_E3A: Human 49.1 11 0.00024 29.4 1.5 6 541-546 37-42 (94)
125 PF10873 DUF2668: Protein of u 47.9 22 0.00048 30.7 3.3 17 534-550 61-77 (155)
126 KOG4242 Predicted myosin-I-bin 47.5 32 0.00069 36.1 5.0 17 50-66 166-182 (553)
127 PF02009 Rifin_STEVOR: Rifin/s 46.3 4.3 9.3E-05 40.3 -1.3 9 536-544 258-266 (299)
128 PF14610 DUF4448: Protein of u 45.7 38 0.00082 31.3 5.0 14 549-562 172-185 (189)
129 PF12669 P12: Virus attachment 45.3 22 0.00047 25.8 2.5 8 557-564 20-27 (58)
130 KOG3763 mRNA export factor TAP 44.6 12 0.00025 40.1 1.4 63 167-231 216-284 (585)
131 PF15345 TMEM51: Transmembrane 42.9 31 0.00067 32.5 3.8 22 533-554 57-78 (233)
132 PF15176 LRR19-TM: Leucine-ric 38.9 15 0.00034 29.5 1.0 16 531-546 15-30 (102)
133 PF01102 Glycophorin_A: Glycop 37.1 7.6 0.00017 32.9 -1.0 32 532-564 66-97 (122)
134 PF04689 S1FA: DNA binding pro 34.7 46 0.001 24.3 2.7 19 533-551 12-30 (69)
135 PF15102 TMEM154: TMEM154 prot 34.1 15 0.00031 32.1 0.2 14 533-546 59-72 (146)
136 PF06809 NPDC1: Neural prolife 33.6 41 0.00088 33.3 3.1 24 538-561 202-225 (341)
137 PF10389 CoatB: Bacteriophage 31.0 47 0.001 22.7 2.2 20 541-560 25-44 (46)
138 PF04971 Lysis_S: Lysis protei 30.9 16 0.00036 27.1 0.0 12 534-545 33-44 (68)
139 smart00367 LRR_CC Leucine-rich 30.7 32 0.00069 20.0 1.3 12 25-36 2-13 (26)
140 TIGR03778 VPDSG_CTERM VPDSG-CT 30.0 58 0.0013 19.3 2.1 14 548-561 11-24 (26)
141 PHA03286 envelope glycoprotein 28.7 38 0.00082 35.2 2.1 17 441-457 317-333 (492)
142 PF05084 GRA6: Granule antigen 28.1 61 0.0013 28.5 3.0 21 542-562 155-175 (215)
143 PF12301 CD99L2: CD99 antigen 27.9 31 0.00066 31.2 1.2 32 533-567 114-145 (169)
144 PF15069 FAM163: FAM163 family 27.4 66 0.0014 27.9 3.0 25 536-560 5-29 (143)
145 PHA03283 envelope glycoprotein 27.0 1.1E+02 0.0025 32.5 5.2 27 425-457 315-341 (542)
146 PF05568 ASFV_J13L: African sw 26.2 35 0.00077 29.3 1.2 7 540-546 35-41 (189)
147 PHA03281 envelope glycoprotein 25.1 1.8E+02 0.004 31.1 6.3 26 426-457 476-501 (642)
148 KOG3637 Vitronectin receptor, 24.9 78 0.0017 37.5 4.0 12 533-544 978-989 (1030)
149 PF10577 UPF0560: Uncharacteri 24.6 46 0.001 37.3 2.0 18 540-557 278-295 (807)
150 PF05725 FNIP: FNIP Repeat; I 23.3 1.3E+02 0.0029 20.1 3.4 10 263-272 33-42 (44)
151 PF15330 SIT: SHP2-interacting 22.7 56 0.0012 27.1 1.7 10 554-563 19-28 (107)
152 KOG1094 Discoidin domain recep 21.8 1.4E+02 0.003 32.7 4.7 20 414-433 252-272 (807)
153 PF06040 Adeno_E3: Adenovirus 21.8 23 0.0005 29.1 -0.7 12 535-546 90-101 (127)
154 PF05393 Hum_adeno_E3A: Human 21.6 45 0.00097 26.1 0.9 19 532-550 32-50 (94)
155 PF14575 EphA2_TM: Ephrin type 21.3 77 0.0017 24.3 2.2 7 541-547 4-10 (75)
156 smart00469 WIF Wnt-inhibitory 21.3 20 0.00043 31.0 -1.2 39 460-498 18-56 (136)
157 PF02480 Herpes_gE: Alphaherpe 21.2 32 0.00069 36.4 0.0 23 533-555 351-373 (439)
158 KOG1024 Receptor-like protein 21.0 1.4E+02 0.003 31.0 4.3 25 474-498 52-76 (563)
159 PTZ00208 65 kDa invariant surf 20.9 29 0.00063 35.4 -0.3 10 554-563 406-415 (436)
160 PF03988 DUF347: Repeat of Unk 20.6 72 0.0016 22.8 1.7 25 537-561 27-51 (55)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-36 Score=353.60 Aligned_cols=296 Identities=34% Similarity=0.537 Sum_probs=206.4
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|++.+.+|. ..+++|++|+|++|.+++.+|..++.+++|++|+|++|.+.+.+|..++++++|++|+|+
T Consensus 119 ~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 467777777777776664 456777777777777777777777777777777777777776777777777777777777
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+.+|..++++++|++|++++|++.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
|..+.++++|++|++++|.+....+..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 77777777777777777766666666666677777777777777766666666777777777777777766776666677
Q ss_pred CCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 242 TLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|+.|++++|++++.+|..+. +++|+.|++++|++++.+|..+.. +.++ +++.+|+++
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 777777777777666664432 456666666666666666655544 4444 566666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-34 Score=335.50 Aligned_cols=298 Identities=31% Similarity=0.470 Sum_probs=269.3
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+.+|..+.++++|++|+|++|.+++.+|..+.++++|++|+|++|.+++.+|..++++++|++|+++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 99999999999999999988877777788888899999999999888888888889999999999999888888888888
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCcccccCCce-EEeeccccc
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSIN 299 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~~~l~-l~l~~n~~~ 299 (579)
.|+.|++++|++++.+|... .+++|+.|++++|++++.+|..+....++ +++++|.+.
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS 488 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence 99999999998888777544 36888888888888888888765545554 788888775
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-29 Score=254.32 Aligned_cols=297 Identities=21% Similarity=0.216 Sum_probs=151.3
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCC-------------------
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT------------------- 62 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------------- 62 (579)
+|+++.|..|.+. .+|.......+|+.|+|.+|.++..-.+++..++.|+.|||+.|.|+
T Consensus 103 nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 103 NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 3455555555444 34443333444555555555554444444444444444444444444
Q ss_pred -----CCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCC
Q 008072 63 -----GRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKI 137 (579)
Q Consensus 63 -----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 137 (579)
..-...|.++.+|..|.|+.|+++...+..|.+|++|+.|+|..|++.-.....|.++++|+.|.|..|++...-
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 333344444444444555555444333334444555555555555444222333444444444444444443333
Q ss_pred chhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCC
Q 008072 138 PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA 217 (579)
Q Consensus 138 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 217 (579)
...|..+.++++|+|+.|++...-..++.+++.|+.|+++.|.+.....+.++..++|+.|+|+.|+++..-+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 33444555555555555555544444555666666666666666555555555566666666666666644445555555
Q ss_pred CCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc----cCCCCcEEEcccCCCCCCCCccccc-CCce-E
Q 008072 218 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI----IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-M 291 (579)
Q Consensus 218 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~----~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l 291 (579)
.|++|+|++|.++...-..|..+++|+.|||++|.++..|.+.. .+++|+.|++.+|++....-..|.. ..|+ +
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 66666666666554444455556666666666666654443221 1456666666666665333334444 4444 5
Q ss_pred Eeeccccc
Q 008072 292 NVIGSSIN 299 (579)
Q Consensus 292 ~l~~n~~~ 299 (579)
||.+|.+-
T Consensus 422 dL~~Naia 429 (873)
T KOG4194|consen 422 DLGDNAIA 429 (873)
T ss_pred cCCCCcce
Confidence 66666553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=8.5e-29 Score=249.30 Aligned_cols=294 Identities=24% Similarity=0.207 Sum_probs=178.4
Q ss_pred eEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecc
Q 008072 4 GHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 83 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 83 (579)
+.|++++|.+...-+..|-++++|+.++|..|.++ .+|.......+|+.|+|.+|.|+..-..++..++.|+.||||.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34777777777776777777777777777777777 66765555666777777777777655566666777777777777
Q ss_pred cCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchh
Q 008072 84 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPR 163 (579)
Q Consensus 84 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 163 (579)
.++.+--..+..-.++++|+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.--.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 66644334455556677777777777655556666666777777777777644444555577777777777666533233
Q ss_pred hhhcCCCCCeeEcCCCCCCCCChhhh------------------------cCCCCCCEEEcccCcCCCCcchhhcCCCCC
Q 008072 164 SFRALNKLEDLRIGDLSAEDSTLDFL------------------------ESQKSLSILSLRNCRVSGKIPDQLGTFAKL 219 (579)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~~~~~~~~l------------------------~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 219 (579)
.|..+++|+.|.+..|++.......| -+++.|+.|+||.|.|...-++.+.-+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 45555555555555554444433334 444444445555555444444444444555
Q ss_pred CEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc--cCCCCcEEEcccCCCCCCCCccc---cc-CCce-EE
Q 008072 220 QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLPRNF---AK-GGLS-MN 292 (579)
Q Consensus 220 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~--~~~~L~~Ldls~N~l~~~~p~~~---~~-~~l~-l~ 292 (579)
+.|+|++|+|+...+.+|..+..|+.|+|++|.+. .+.+.. .+++|+.|||++|.+++.+-+.- .. +.|+ +.
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 55555555555555555555555555555555554 222221 24788888888888887765532 22 3444 78
Q ss_pred eeccccc
Q 008072 293 VIGSSIN 299 (579)
Q Consensus 293 l~~n~~~ 299 (579)
+.+|++-
T Consensus 399 l~gNqlk 405 (873)
T KOG4194|consen 399 LTGNQLK 405 (873)
T ss_pred ecCceee
Confidence 8888775
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.6e-28 Score=247.24 Aligned_cols=292 Identities=25% Similarity=0.331 Sum_probs=249.3
Q ss_pred eeEEEEeCcccc-cccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 3 HGHLKMRILVLL-VTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 3 L~~L~l~~~~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
++-+|+++|+|+ +..|.....+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+-..+..++.|+.+++.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 356899999999 589999999999999999999988 89999999999999999999998 566678899999999999
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCC
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 160 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 160 (579)
+|++.. -+|..+..+..|..|+|++|++. +.|..+..-+++..|+||+|++.......+.+++.|-.|+|++|++. .
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 998853 47888899999999999999999 78999999999999999999998544456778999999999999998 5
Q ss_pred chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCC-CCcchhhcCCCCCCEEeccCCcCCCCCchhccC
Q 008072 161 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 239 (579)
Q Consensus 161 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 239 (579)
+|..+..+..|++|.|++|.+.......+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|++. .+|..+..
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 6778899999999999999888777777788888899999887654 347888888999999999999998 88999999
Q ss_pred CCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccC
Q 008072 240 LSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 300 (579)
Q Consensus 240 l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~ 300 (579)
+++|+.|+|++|+++..--......+|++|++|.|+++ .+|+..+. +.|+ +.+.+|.++.
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence 99999999999999843222223578999999999998 67888877 6665 6677777664
No 6
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.93 E-value=3.6e-26 Score=208.83 Aligned_cols=169 Identities=44% Similarity=0.782 Sum_probs=112.5
Q ss_pred ccccccCCcccccCCCceeecCCCCcccce-EEeeCCCeeEEcccccccCCCCCCcccccccccccCCCCHHhHhhhccc
Q 008072 329 SFSIKCGGTQIASASGIEFDDDSKTLEAAS-FYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARIS 407 (579)
Q Consensus 329 ~~~~nCgg~~~~~~~~~~~~~d~~~~g~~~-~~~~~~~~W~~s~~g~~~~~~~~~~~~~~s~~~~~~~~p~~ly~t~r~~ 407 (579)
.++|||||+...+..+..|++|....+..+ |+.. ... ..+.......+.++.++.+|||+|++
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~---------------~~~-~~~~~~~~~~i~~t~d~~Lyqt~R~g 65 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVS---------------SDN-NGSTSSTNSSIPGTTDDPLYQTERYG 65 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSSSTTSS---------------------------SSTTS--TTS-HHHHHTTT-----
T ss_pred EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccc---------------ccc-ccccccccccccCCCchhhhHhhcCC
Confidence 368999999876667999999986544433 2211 000 11112234466678889999999999
Q ss_pred CCCcccccCC-CCCceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEE-EEEecCC
Q 008072 408 PSSLRYYGLG-LENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTF-EANVTNT 485 (579)
Q Consensus 408 ~~~l~~~~~~-~~~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~-~v~~~~~ 485 (579)
..+++ |.+| +++|.|.|+|||+|+++..+..+..+|+|+|||++||++++++|||++++|+..+|+++.| .|.++||
T Consensus 66 ~~~f~-Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg 144 (174)
T PF11721_consen 66 PSSFS-YDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDG 144 (174)
T ss_dssp SSSEE-EEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETT
T ss_pred CCceE-EEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCC
Confidence 77788 8888 8899999999999998654444566899999999999999999999999997776777776 8999999
Q ss_pred eEEEEEEecCCCCccccCCCccC-ceeeeE
Q 008072 486 IIEIHFFWAGKGTCCIPFQGTYG-PLVSAI 514 (579)
Q Consensus 486 ~l~i~~~~~~~g~~~~~~~~~~~-~~ln~i 514 (579)
.|+|+|.|+++|.++++..+.++ |+||||
T Consensus 145 ~L~i~f~~~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 145 TLNIQFVWAGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEETTEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred cEEEEEEecCCCcEEeeccccCCCcEEeeC
Confidence 99999999999999998877676 999997
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.2e-26 Score=235.23 Aligned_cols=267 Identities=25% Similarity=0.307 Sum_probs=175.9
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCC-CCCccccCCCcCCcEEEee
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT-GRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls 81 (579)
++-|.|....+. .+|.+++.|.+|++|.+++|++. .+...+..|+.|+.+++..|++. .-+|..+..+..|+.||||
T Consensus 34 ~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 34 MTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred eeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 455666666654 68899999999999999999988 67777888888999999888875 3467777888889999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|++. ..|..+.+-.++-.|+|++|++.......+.++..|-.||||+|++. .+|..+..+..|++|+|++|.+...-
T Consensus 112 hNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 112 HNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred hhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 99886 67888888888888999999888544455678888888899888887 66777788888888888888765322
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCC-ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 240 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 240 (579)
-..+..+++|+.|++++..-+.. .+..+..+.+|..+|||.|.+. .+|+++..+++|+.|+||+|+|+ .+....+..
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W 267 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW 267 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHH
Confidence 22333344555555554432222 3334445555555555555555 45555555555555555555555 222223333
Q ss_pred CCCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCC
Q 008072 241 STLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPL 276 (579)
Q Consensus 241 ~~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l 276 (579)
.+|++|+|++|+++ .+|... .++.|+.|.+.+|++
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 44555555555554 344322 234444444444444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1e-25 Score=218.17 Aligned_cols=290 Identities=26% Similarity=0.407 Sum_probs=214.4
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
|++|++..+.+. ++|++++.+..++.|+.++|++. .+|..+..+.+|+.|+++.|.+. .+|+.++.+..|+.|+..+
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence 556666666655 45566666666666666666666 56666666666777777776666 5666666666677777776
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
|++. ..|..+.++.+|..|++.+|++.. +|...-+++.|++||+..|.+. .+|..++.+.+|+-|++..|.+. .+|
T Consensus 147 N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 147 NQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred cccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 6665 556666677777777777777773 3433334788888888888776 78888899999999999999887 566
Q ss_pred hhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCC
Q 008072 163 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 242 (579)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 242 (579)
.|..|..|.+|+.+.|.+.....+....+++|..|||++|++. ..|..+..+.+|++||+|+|.|+ .+|.+++++ +
T Consensus 223 -ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h 298 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H 298 (565)
T ss_pred -CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-e
Confidence 7888999999999999888888888889999999999999998 88998999999999999999999 677789999 9
Q ss_pred CcEEEecCccCCC-------------------------------------C-----CCccccCCCCcEEEcccCCCCCCC
Q 008072 243 LQYLYLGNNNLSG-------------------------------------E-----LPVNIIAPNLIALDVSYNPLSGNL 280 (579)
Q Consensus 243 L~~L~L~~N~l~~-------------------------------------~-----ip~~~~~~~L~~Ldls~N~l~~~~ 280 (579)
|+.|-+.+|.+.. . .|+.....+.+.|+++.=+++ .+
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~V 377 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LV 377 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cC
Confidence 9999999998731 0 011111245677888888888 45
Q ss_pred Cccccc-C---Cce-EEeecccccCCCCCCCCCcc
Q 008072 281 PRNFAK-G---GLS-MNVIGSSINANNLQDGKALG 310 (579)
Q Consensus 281 p~~~~~-~---~l~-l~l~~n~~~~~~~~~~~p~~ 310 (579)
|+..+. . ..+ ++++.|++. ++|..
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~------elPk~ 406 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLC------ELPKR 406 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHh------hhhhh
Confidence 554433 1 233 788888875 66654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-23 Score=222.08 Aligned_cols=291 Identities=28% Similarity=0.395 Sum_probs=189.4
Q ss_pred CCeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEe
Q 008072 1 MPHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 80 (579)
Q Consensus 1 ~~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 80 (579)
+.|++|+|++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+...+.+|++|+|.+|++. .+|..+..+++|++|++
T Consensus 45 v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 35889999988855 67888889999999999999887 67888888888999999988887 78888888889999998
Q ss_pred ecccCCCCCchhhCCCC----------------------------------------CCcE-EEeccCCCCCCcchhhh-
Q 008072 81 SSNNFFGPLPKELGKLT----------------------------------------SLQQ-LYIDSSGVTGSIPQEFA- 118 (579)
Q Consensus 81 s~n~l~~~~p~~l~~l~----------------------------------------~L~~-L~L~~n~l~~~~~~~l~- 118 (579)
+.|.+. .+|..+..+. .|++ |+|+.|.+....-..+.
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccc
Confidence 888875 3333222211 1222 33333332200000000
Q ss_pred --------------------------------------CCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC-
Q 008072 119 --------------------------------------NLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG- 159 (579)
Q Consensus 119 --------------------------------------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~- 159 (579)
.-.+|++++++.|+++ .+|+|++.+.+|+.|+...|.+..
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~l 279 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVAL 279 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhh
Confidence 0013444555555554 445666666666666665555431
Q ss_pred ---------------------CchhhhhcCCCCCeeEcCCCCC-------------------------------------
Q 008072 160 ---------------------PIPRSFRALNKLEDLRIGDLSA------------------------------------- 181 (579)
Q Consensus 160 ---------------------~~p~~~~~l~~L~~L~l~~~~~------------------------------------- 181 (579)
.+|.....++.|++|++..|.+
T Consensus 280 p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 1223333345555555555444
Q ss_pred ------------CCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEec
Q 008072 182 ------------EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLG 249 (579)
Q Consensus 182 ------------~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 249 (579)
++...+.+.++++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+..++.|++|...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 3333344566777888888888777333345677778888888888887 677777777788888887
Q ss_pred CccCCCCCCccccCCCCcEEEcccCCCCCC-CCcccccCCce-EEeecccc
Q 008072 250 NNNLSGELPVNIIAPNLIALDVSYNPLSGN-LPRNFAKGGLS-MNVIGSSI 298 (579)
Q Consensus 250 ~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~-~p~~~~~~~l~-l~l~~n~~ 298 (579)
.|++. .+|+...+++|+.+|+|.|+|+.. +|.....+.|+ +|+++|..
T Consensus 439 sN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcee-echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 77777 677555688999999999999864 34333226666 89999874
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.2e-20 Score=221.16 Aligned_cols=268 Identities=21% Similarity=0.252 Sum_probs=155.0
Q ss_pred ccchhhcCCC-CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhC
Q 008072 16 TLPSELFMLR-KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG 94 (579)
Q Consensus 16 ~lp~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 94 (579)
.+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|++. .+|..+..+++|+.|+|+++.....+|. +.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence 4555555443 3666666655554 455444 3455666666665555 4455555556666666655543334442 45
Q ss_pred CCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCee
Q 008072 95 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 174 (579)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 174 (579)
.+++|++|+|++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 55566666665555444555555556666666666554444444433 4555555555555443333321 2344444
Q ss_pred EcCCCCCCCCCh-----------------------------hhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEecc
Q 008072 175 RIGDLSAEDSTL-----------------------------DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLS 225 (579)
Q Consensus 175 ~l~~~~~~~~~~-----------------------------~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 225 (579)
++.++.+...+. .....+++|+.|+|++|.....+|..++++++|+.|+|+
T Consensus 731 ~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 731 DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred ecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 444443322111 111224577888888887776788888888888888888
Q ss_pred CCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeec
Q 008072 226 FNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIG 295 (579)
Q Consensus 226 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~ 295 (579)
+|...+.+|... .+++|+.|+|++|.....+|.. ..+|+.|+|++|.++ .+|.++.. +.|+ +++.+
T Consensus 811 ~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 811 NCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 876555667654 6778888888887665555532 367888888888887 46665555 5554 66666
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=3.9e-20 Score=216.84 Aligned_cols=272 Identities=21% Similarity=0.229 Sum_probs=218.5
Q ss_pred cchhhcCCCCCcEEEccCCcC------CCCCchhhcCCC-CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCC
Q 008072 17 LPSELFMLRKLMDLNLGQNVL------NGSIPAEIGQLS-NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPL 89 (579)
Q Consensus 17 lp~~l~~l~~L~~L~Ls~n~l------~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 89 (579)
-+..|..+++|+.|.+..+.. ...+|..+..++ +|+.|++.++.+. .+|..| ...+|+.|++++|.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 345688999999999976642 334677777765 5999999999987 778777 5789999999999986 57
Q ss_pred chhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCC
Q 008072 90 PKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALN 169 (579)
Q Consensus 90 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 169 (579)
+..+..+++|+.|+|+++.....+|. +..+++|+.|+|++|.....+|..+..+++|+.|++++|.....+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 77888999999999998876667774 8889999999999998878899999999999999999987777788765 789
Q ss_pred CCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhh------------------------------cCCCCC
Q 008072 170 KLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL------------------------------GTFAKL 219 (579)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~------------------------------~~l~~L 219 (579)
+|+.|++++|......+. ...+|+.|+|++|.+. .+|..+ ..+++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999865433322 2457888888888875 344321 123578
Q ss_pred CEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCcccccCCc-eEEeecccc
Q 008072 220 QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGL-SMNVIGSSI 298 (579)
Q Consensus 220 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~~~l-~l~l~~n~~ 298 (579)
+.|+|++|.....+|.++.++++|+.|+|++|...+.+|....+++|+.|++++|.....+|... ..+ .+++++|.+
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~--~nL~~L~Ls~n~i 858 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS--TNISDLNLSRTGI 858 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc--cccCEeECCCCCC
Confidence 89999999888889999999999999999999777788977778999999999998666666432 234 478888887
Q ss_pred c
Q 008072 299 N 299 (579)
Q Consensus 299 ~ 299 (579)
.
T Consensus 859 ~ 859 (1153)
T PLN03210 859 E 859 (1153)
T ss_pred c
Confidence 5
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1e-23 Score=204.44 Aligned_cols=266 Identities=26% Similarity=0.380 Sum_probs=211.8
Q ss_pred cCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcE
Q 008072 22 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 101 (579)
Q Consensus 22 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 101 (579)
+.-..++.|++++|.+. .+...+.++..|.+|++.+|++. ..|.+++.+..++.|+.++|+++ ++|+.++.+.+|.+
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 33456788888888887 56666888888888999888888 67888888888888888888886 78888888888888
Q ss_pred EEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCC
Q 008072 102 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 181 (579)
Q Consensus 102 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~ 181 (579)
|+++.|.+. .+|+.++.+..|+.|+..+|+++ ..|..+.++.+|..|++.+|.+....|..+. ++.|++|+...|.+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence 988888888 67888888888888888888888 6778888888888888888888866565555 88888888777655
Q ss_pred CCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhc-cCCCCCcEEEecCccCCCCCCcc
Q 008072 182 EDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL-QDLSTLQYLYLGNNNLSGELPVN 260 (579)
Q Consensus 182 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~ip~~ 260 (579)
.. .++.++.+.+|.-|+|..|++. .+| .|+.+..|.+|.++.|.|. .+|... .++.+|..|||..|++. ..|.+
T Consensus 196 ~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 ET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred hc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence 43 4456778888888999999987 677 6888999999999999987 566554 48899999999999998 77766
Q ss_pred cc-CCCCcEEEcccCCCCCCCCccccc-CCceEEeeccccc
Q 008072 261 II-APNLIALDVSYNPLSGNLPRNFAK-GGLSMNVIGSSIN 299 (579)
Q Consensus 261 ~~-~~~L~~Ldls~N~l~~~~p~~~~~-~~l~l~l~~n~~~ 299 (579)
.. +.+|+.||+|+|.+++. |.++.. ....+-+-+|++-
T Consensus 271 ~clLrsL~rLDlSNN~is~L-p~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSL-PYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred HHHhhhhhhhcccCCccccC-CcccccceeeehhhcCCchH
Confidence 64 58899999999999964 435555 3333667777763
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3e-20 Score=203.18 Aligned_cols=254 Identities=28% Similarity=0.364 Sum_probs=200.4
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
-..|+|+.++++ ++|+.+. ++|+.|++++|.++ .+|. ..++|++|+|++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 357899999988 6888775 58999999999999 5664 3578999999999999 56643 46899999999
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|.+.+ +|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 9886 44542 367889999999998 45653 4789999999999984 5542 3568899999999874 55
Q ss_pred hhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCC
Q 008072 163 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 242 (579)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 242 (579)
.. ..+|+.|++++|.+...+. ..++|+.|++++|.++ .+|.. +.+|+.|++++|.+++ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 31 2589999999998876542 2367899999999998 46653 3679999999999984 6643 368
Q ss_pred CcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 243 LQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 243 L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
|+.|++++|+++ .+|. .+.+|+.|++++|+++ .+|..+.. ..+. +++++|+++
T Consensus 404 L~~LdLS~N~Ls-sIP~--l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 404 LKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCEEEccCCcCC-CCCc--chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 999999999998 4774 2467889999999998 68887776 5555 899999987
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=9.4e-21 Score=192.81 Aligned_cols=272 Identities=22% Similarity=0.248 Sum_probs=176.9
Q ss_pred EEEEeCcccc-cccchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCcEEEeeccCCCC------CCccccCCCc
Q 008072 5 HLKMRILVLL-VTLPSELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFTG------RVPTELGNLT 73 (579)
Q Consensus 5 ~L~l~~~~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~ 73 (579)
.|+|+++.+. ...+..+..++.|+.|++++|.++.. ++..+...++|++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5778888887 45666677788899999999988643 55566777889999999888762 2334566788
Q ss_pred CCcEEEeecccCCCCCchhhCCCCC---CcEEEeccCCCCC----CcchhhhCC-CCCcEEEccCCcCCCC----Cchhh
Q 008072 74 KLISLSFSSNNFFGPLPKELGKLTS---LQQLYIDSSGVTG----SIPQEFANL-KSLRILWASDNLFTGK----IPEFF 141 (579)
Q Consensus 74 ~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~~ 141 (579)
+|++|++++|.+.+..+..+..+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8899999888887655655555554 8888888888773 233445666 7888888888888743 23344
Q ss_pred cCccccceeeecCCcCCCC----chhhhhcCCCCCeeEcCCCCCCCCCh----hhhcCCCCCCEEEcccCcCCCCcchhh
Q 008072 142 GTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTL----DFLESQKSLSILSLRNCRVSGKIPDQL 213 (579)
Q Consensus 142 ~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~~~~~~ 213 (579)
..+++|++|++++|.+.+. ++..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5566788888888877642 33344555677777777776654422 234456677777777777664322222
Q ss_pred c-----CCCCCCEEeccCCcCCC----CCchhccCCCCCcEEEecCccCCCC----CCcccc-C-CCCcEEEcccCCC
Q 008072 214 G-----TFAKLQLLDLSFNKLTG----QIPTSLQDLSTLQYLYLGNNNLSGE----LPVNII-A-PNLIALDVSYNPL 276 (579)
Q Consensus 214 ~-----~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----ip~~~~-~-~~L~~Ldls~N~l 276 (579)
. ..+.|++|++++|.++. .+...+..+++|+.+++++|.++.. +...+. . +.|++||+.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 13567777777777652 1233445556677777777777633 111111 2 4666666666653
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.1e-19 Score=197.74 Aligned_cols=244 Identities=27% Similarity=0.463 Sum_probs=126.1
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
.+.|++++++++ .+|..+. ++|+.|+|++|.++ .+|..+. ++|++|+|++|.++ .+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 456666666655 3454332 45666666666666 4555443 35666666666666 4454433 3566666666
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 6665 4455443 35666666666666 3454432 366666666666652 343222 356666666666653 33
Q ss_pred hhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCC
Q 008072 163 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 242 (579)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 242 (579)
..+ .++|+.|++++|.+...+. .+ .++|+.|+|++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. ..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCccccCCh-hh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence 222 1355555555555443221 11 145555555555554 3443332 45555555555555 3333332 24
Q ss_pred CcEEEecCccCCCCCCccc-----cCCCCcEEEcccCCCC
Q 008072 243 LQYLYLGNNNLSGELPVNI-----IAPNLIALDVSYNPLS 277 (579)
Q Consensus 243 L~~L~L~~N~l~~~ip~~~-----~~~~L~~Ldls~N~l~ 277 (579)
|+.|++++|++. .+|..+ ..+++..|++.+|+++
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 555555555554 333221 1244455555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=4e-19 Score=194.43 Aligned_cols=242 Identities=25% Similarity=0.294 Sum_probs=191.2
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|+.|++..|+++. +|. .+++|++|+|++|+++ .+|.. .++|+.|+|++|.++ .+|.. .++|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 47899999999885 664 3589999999999999 56642 468999999999998 45553 3578899999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|++. .+|. .+++|+.|++++|++.+ +|.. ..+|+.|++++|.+. .+|. ...+|+.|++++|++.+ +
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-L 357 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-L 357 (788)
T ss_pred CCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---cccccceEecCCCccCC-C
Confidence 99987 4554 24789999999999995 4542 246889999999998 4564 23589999999999985 5
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
|.. ..+|+.|++++|.+..... ...+|+.|+|++|.++ .+|.. +++|+.|++++|+++ .+|.. ..
T Consensus 358 P~l---p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~ 422 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PS 422 (788)
T ss_pred CCC---CcccceehhhccccccCcc----cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hh
Confidence 542 3578889999988775432 2357999999999998 46643 368999999999998 46753 35
Q ss_pred CCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCCCCCccc
Q 008072 242 TLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNF 284 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~ 284 (579)
+|+.|++++|+++ .+|..+. +++|+.|+|++|+|++..|..+
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7889999999998 7886653 7899999999999999888655
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=9e-21 Score=201.41 Aligned_cols=264 Identities=26% Similarity=0.314 Sum_probs=193.6
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
|+.|+.+.|-+....+. ..-.+|+++++++|.++ .+|+.++.+.+|+.|+..+|+++ .+|..+..+++|+.|++.+
T Consensus 221 l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred hheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence 44555555555422221 12245777777777777 46677777777777777777775 6666666777777777777
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCC-CcEEEccCCcCCCCCchh-hcCccccceeeecCCcCCCC
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKS-LRILWASDNLFTGKIPEF-FGTLTELADLRLQGTLLEGP 160 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~ 160 (579)
|.+. -+|..+..+..|++|+|..|++....+..+..+.. |+.|..+.|++. ..|.. -...+.|+.|++.+|.++..
T Consensus 297 nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 297 NELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccccc
Confidence 7765 45666666777777777777776332223333332 566666666665 23321 12356789999999999988
Q ss_pred chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCC
Q 008072 161 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 240 (579)
Q Consensus 161 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 240 (579)
.-..+.+..+|+.|+|+.|.+...+...+.++..|+.|+||+|.++ .+|..+..+..|++|....|++. ..| .+..+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 7778899999999999999999999999999999999999999998 78888999999999999999998 677 68889
Q ss_pred CCCcEEEecCccCCC-CCCccccCCCCcEEEcccCC
Q 008072 241 STLQYLYLGNNNLSG-ELPVNIIAPNLIALDVSYNP 275 (579)
Q Consensus 241 ~~L~~L~L~~N~l~~-~ip~~~~~~~L~~Ldls~N~ 275 (579)
+.|+.+|++.|+++. .+|.....++|++||+++|.
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999999985 33433334899999999998
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=4e-21 Score=186.33 Aligned_cols=276 Identities=22% Similarity=0.252 Sum_probs=198.0
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec-ccCCCCCchhhCCCCCCcEEEe
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS-NNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 104 (579)
.-..|+|..|.|+..-+.+|+.+++|++|||++|.|+.+-|++|.++.+|..|-+.+ |++.......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 466788888888866667788888888888888888888888888888887776655 7777555556888888888888
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC------------CchhhhhcCCCCC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG------------PIPRSFRALNKLE 172 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~------------~~p~~~~~l~~L~ 172 (579)
.-|++.......|..+++|..|.+-+|.+.......+..+.+++.+.+..|.+.. ..|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 8888887778888888888888888888874444467778888888888777431 1122222222222
Q ss_pred eeEcCCCCCCCCChhhhc-CCCCCCEEEcccCcCCCCcc-hhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecC
Q 008072 173 DLRIGDLSAEDSTLDFLE-SQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGN 250 (579)
Q Consensus 173 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 250 (579)
...+...++.......+. ....+.+--.+.+...+.-| ..|..+++|+.|+|++|++++.-+.+|.+..+++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 223333333333222221 11222222223344444545 4688999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccc--CCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccCCC
Q 008072 251 NNLSGELPVNII--APNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINANN 302 (579)
Q Consensus 251 N~l~~~ip~~~~--~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~~~ 302 (579)
|++. .+....+ +..|+.|+|.+|+++...|..|.. ..+. +++..|+|.++.
T Consensus 308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred chHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 9987 3433332 589999999999999888877776 4454 899999998753
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=9.1e-19 Score=192.81 Aligned_cols=245 Identities=24% Similarity=0.347 Sum_probs=193.5
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEe
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 104 (579)
.+...|+++++.++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|++|++++|++. .+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 46789999999998 5777654 57999999999999 5676554 58999999999987 5676553 57999999
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 184 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 184 (579)
++|++. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|.+...
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC
Confidence 999998 6777664 58999999999998 5676554 589999999999984 554432 4788999999988764
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCC
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~ 264 (579)
+... .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .+|... ..
T Consensus 320 P~~l---~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l-~~ 388 (754)
T PRK15370 320 PETL---PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL-PA 388 (754)
T ss_pred Cccc---cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH-HH
Confidence 3322 368999999999998 4776554 79999999999998 5776553 68999999999999 567543 35
Q ss_pred CCcEEEcccCCCCCCCCccccc-----CC-ceEEeeccccc
Q 008072 265 NLIALDVSYNPLSGNLPRNFAK-----GG-LSMNVIGSSIN 299 (579)
Q Consensus 265 ~L~~Ldls~N~l~~~~p~~~~~-----~~-l~l~l~~n~~~ 299 (579)
.|+.|++++|+|+ .+|..+.. +. ..+++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7999999999998 55654322 22 34899999886
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=3.3e-19 Score=181.49 Aligned_cols=252 Identities=23% Similarity=0.247 Sum_probs=194.5
Q ss_pred CeeEEEEeCccccc----ccchhhcCCCCCcEEEccCCcCCC------CCchhhcCCCCCcEEEeeccCCCCCCccccCC
Q 008072 2 PHGHLKMRILVLLV----TLPSELFMLRKLMDLNLGQNVLNG------SIPAEIGQLSNMQYLSLGINNFTGRVPTELGN 71 (579)
Q Consensus 2 ~L~~L~l~~~~l~~----~lp~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 71 (579)
+|++|+++++.+.. .++..+...+.+++|+++++.+.+ .++..+..+++|+.|+|++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 47899999999854 367777788899999999998762 24456778899999999999998666666655
Q ss_pred CcC---CcEEEeecccCCC----CCchhhCCC-CCCcEEEeccCCCCCC----cchhhhCCCCCcEEEccCCcCCCC---
Q 008072 72 LTK---LISLSFSSNNFFG----PLPKELGKL-TSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGK--- 136 (579)
Q Consensus 72 l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~--- 136 (579)
+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 9999999999873 233456667 8999999999999853 344567788999999999999853
Q ss_pred -CchhhcCccccceeeecCCcCCCC----chhhhhcCCCCCeeEcCCCCCCCCChhhhc-----CCCCCCEEEcccCcCC
Q 008072 137 -IPEFFGTLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLDFLE-----SQKSLSILSLRNCRVS 206 (579)
Q Consensus 137 -~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~Ls~n~l~ 206 (579)
++..+...++|+.|++++|.+.+. ++..+..+++|++|++++|.+.......+. ..+.|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 233455567999999999998744 345567789999999999987764333322 2479999999999997
Q ss_pred C----CcchhhcCCCCCCEEeccCCcCCCC----CchhccCC-CCCcEEEecCccC
Q 008072 207 G----KIPDQLGTFAKLQLLDLSFNKLTGQ----IPTSLQDL-STLQYLYLGNNNL 253 (579)
Q Consensus 207 ~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~L~~N~l 253 (579)
. .+...+..+++|++|++++|.++.. ....+... +.|++|++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 2344566778999999999999855 34444444 7899999988864
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=8.6e-20 Score=177.12 Aligned_cols=274 Identities=22% Similarity=0.209 Sum_probs=194.2
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeec-cCCCCCCccccCCCcCCcEEEe
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSF 80 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L 80 (579)
+.+.|+|..|+++...|..|..+++|+.||||+|.|+.+-|..|.++++|..|-+.+ |+|+......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 357899999999998889999999999999999999999999999999987777665 9999655568999999999999
Q ss_pred ecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCC------------CchhhcCccccc
Q 008072 81 SSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK------------IPEFFGTLTELA 148 (579)
Q Consensus 81 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------------~p~~~~~l~~L~ 148 (579)
.-|++.-.....+..+++|..|.+..|.+...--.++..+..++.+.+..|.+... .|..++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 99999888888899999999999999999843334788889999998887764311 111222222222
Q ss_pred eeeecCCcCCCCchhhhhcCCCCCee----EcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEec
Q 008072 149 DLRLQGTLLEGPIPRSFRALNKLEDL----RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDL 224 (579)
Q Consensus 149 ~L~l~~n~l~~~~p~~~~~l~~L~~L----~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 224 (579)
...+...++....+..+... ++.+ .-.++....-+...|..+++|+.|+|++|+++..-+.+|.....+++|.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 22333333332222222211 2221 11111222223445677778888888888887766777777778888888
Q ss_pred cCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCC
Q 008072 225 SFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLS 277 (579)
Q Consensus 225 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~ 277 (579)
..|++...--..|.++..|+.|+|.+|+++..-|..+. ..+|.+|+|-.|++.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 88877655556677777888888888887755554333 467777777777665
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=6.1e-17 Score=177.65 Aligned_cols=111 Identities=31% Similarity=0.496 Sum_probs=92.1
Q ss_pred CCCHHhHhhhcccCC---CcccccCCCCC-ceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCC
Q 008072 395 TLDSELYKTARISPS---SLRYYGLGLEN-GKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGS 470 (579)
Q Consensus 395 ~~p~~ly~t~r~~~~---~l~~~~~~~~~-g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~ 470 (579)
..|+.+|||||.+.. +++ |.+++++ |.|.|||||||+... ....++|+|+|||||+.+.++||+..++|+.
T Consensus 249 ~~P~~VyqTA~~~~~~~~~lt-y~~~v~~~~~Y~VrLhFaEi~~~----~~~~~~R~F~V~ing~~~~~~~di~~~~g~~ 323 (623)
T PLN03150 249 FYPESLYQSALVSTDTQPDLS-YTMDVDPNRNYSVWLHFAEIDNS----ITAEGKRVFDVLINGDTAFKDVDIVKMSGER 323 (623)
T ss_pred cChHHHhhhhccccCCCCceE-EEeecCCCCCEEEEEEEEeccCc----cCCCceEEEEEEECCEEeecccChhhhcCCc
Confidence 458999999998763 677 8999976 599999999999622 2355899999999999999999999988877
Q ss_pred CceEEEEEEEEecCCeEEEEEEecCCCCccccCCCccCceeeeEEEEecc
Q 008072 471 KRALVKTFEANVTNTIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQVS 520 (579)
Q Consensus 471 ~~~~~~~~~v~~~~~~l~i~~~~~~~g~~~~~~~~~~~~~ln~iei~~~~ 520 (579)
.+|++++|.+.++++.++|+| +| ..+. +|+|||||||++.
T Consensus 324 ~~~~~~~~~v~~~~g~l~isl-----~p----~~~s-~pilNaiEI~~~~ 363 (623)
T PLN03150 324 YTALVLNKTVAVSGRTLTIVL-----QP----KKGT-HAIINAIEVFEII 363 (623)
T ss_pred ccceEEEeEEeecCCeEEEEE-----ee----CCCC-cceeeeeeeeecc
Confidence 899999999998888888887 22 2232 5999999999853
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=8.9e-19 Score=151.58 Aligned_cols=158 Identities=30% Similarity=0.495 Sum_probs=130.0
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCc
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 100 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 100 (579)
+.++.+++.|.||+|+++ .+|+.+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 556778888889999888 67777888888999999999888 78888888899999999888876 7888888888899
Q ss_pred EEEeccCCCC-CCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCC
Q 008072 101 QLYIDSSGVT-GSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL 179 (579)
Q Consensus 101 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~ 179 (579)
.|||..|++. ..+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|+|.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 8888888876 357777878888888888888887 77778888888888888888876 67778888888777777766
Q ss_pred CCCC
Q 008072 180 SAED 183 (579)
Q Consensus 180 ~~~~ 183 (579)
++..
T Consensus 184 rl~v 187 (264)
T KOG0617|consen 184 RLTV 187 (264)
T ss_pred eeee
Confidence 5543
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-18 Score=150.30 Aligned_cols=161 Identities=28% Similarity=0.491 Sum_probs=146.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
++|.|.|+.|.++ .+|+.+..+.+|+.|++++|++. .+|.++..+++|+.|+++-|++. .+|..|+.++.|+.|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 4678999999988 56777999999999999999998 79999999999999999999998 899999999999999999
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCC
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP 160 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 160 (579)
+|++.. .+|..|..+..|+.|+|+.|.+. .+|...+++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|++. .
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 998864 47888888899999999999999 78999999999999999999998 78999999999999999999998 5
Q ss_pred chhhhhcC
Q 008072 161 IPRSFRAL 168 (579)
Q Consensus 161 ~p~~~~~l 168 (579)
+|..++++
T Consensus 188 lppel~~l 195 (264)
T KOG0617|consen 188 LPPELANL 195 (264)
T ss_pred cChhhhhh
Confidence 56566554
No 25
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.61 E-value=2.9e-15 Score=152.47 Aligned_cols=110 Identities=27% Similarity=0.465 Sum_probs=83.6
Q ss_pred CCCHHhHhhhcccC-----CCcccccCCCCCc-eEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhC
Q 008072 395 TLDSELYKTARISP-----SSLRYYGLGLENG-KYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAG 468 (579)
Q Consensus 395 ~~p~~ly~t~r~~~-----~~l~~~~~~~~~g-~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~ 468 (579)
..|.+||+|||... .+++ |.+ ++++ .|.|||||||+... ....++|.|+|||||+.+.++++.. ..+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nlt-w~~-~~~~~~y~v~lHFaEi~~~----~~~~~~R~F~IyiN~~~~~~~~~~~-~~~ 303 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLT-WSF-VDPGFSYYVRLHFAEIQSL----SPNNNQREFDIYINGQTAYSDVSPP-YLG 303 (347)
T ss_pred cChHHHHHhhhcccccccceEEE-ecc-CCCCccEEEEEEEeecccc----cCCCCeEEEEEEECCeEccCccCcc-ccc
Confidence 45999999999754 3566 999 8888 99999999999832 1345689999999999998755442 334
Q ss_pred CCCceEEEEEEEEecCC-eEEEEEEecCCCCccccCCCccCceeeeEEEEec
Q 008072 469 GSKRALVKTFEANVTNT-IIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQV 519 (579)
Q Consensus 469 ~~~~~~~~~~~v~~~~~-~l~i~~~~~~~g~~~~~~~~~~~~~ln~iei~~~ 519 (579)
+...|+++||++.++++ .+.|+ ++|...+ .++|+|||+|||++
T Consensus 304 ~~~~~~~~d~~~~~~~~~~~~is-----L~~t~~S---~lppiLNalEIy~v 347 (347)
T PF12819_consen 304 ADTVPYYSDYVVNVPDSGFLNIS-----LGPTPDS---TLPPILNALEIYKV 347 (347)
T ss_pred CcceEeecceEEEecCCCEEEEE-----EEeCCCC---CcCceeEeeeeEeC
Confidence 46788999999999864 45555 4544322 34899999999985
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=1.2e-13 Score=140.55 Aligned_cols=194 Identities=27% Similarity=0.396 Sum_probs=116.7
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEe
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 104 (579)
..-...||+.|++. .+|..+..+-.|+.|.|..|.+. .+|.++.++..|++|+|+.|+++ .+|..+..|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33444555556555 55555555555666666666555 55555566666666666666554 4454454444 555555
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 184 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 184 (579)
++|+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+.
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~------------------ 209 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC------------------ 209 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh------------------
Confidence 555555 45555555555555555555555 44555555555555555555544 2222222
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhc---cCCCCCcEEEecCcc
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL---QDLSTLQYLYLGNNN 252 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~N~ 252 (579)
.-.|..||+++|+++ .+|..|..|..|++|-|.+|.+. ..|..+ +...--|+|+.+-|+
T Consensus 210 -------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 210 -------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 224778888999888 78888999999999999999987 444332 334456788888775
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.1e-12 Score=132.55 Aligned_cols=200 Identities=30% Similarity=0.426 Sum_probs=158.5
Q ss_pred EEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCc-CCcEEEeecccCCCCCchhhCCCCCCcEEEeccC
Q 008072 29 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT-KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 107 (579)
Q Consensus 29 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 107 (579)
.|+++.+.+. .....+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5788888775 23444566788999999999998 6676677774 8999999999887 55567889999999999999
Q ss_pred CCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChh
Q 008072 108 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLD 187 (579)
Q Consensus 108 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~ 187 (579)
++. .+|.....+++|+.|++++|++. .+|..+..+..|++|.+++|... ..+..+.++.++..|.+.++..... ..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 998 56666668899999999999998 67776667777999999999644 4566788888888888777765443 45
Q ss_pred hhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhc
Q 008072 188 FLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 237 (579)
Q Consensus 188 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 237 (579)
.+..++++++|++++|.++ .++. +..+.+++.|++++|.++...|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 5677888999999999998 4444 7888999999999999987666543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1e-11 Score=130.22 Aligned_cols=202 Identities=32% Similarity=0.498 Sum_probs=164.2
Q ss_pred EEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCC-CCcEEEeccCCCCCCcchhhhCCCCCcEEEccCC
Q 008072 53 YLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLT-SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 131 (579)
Q Consensus 53 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 131 (579)
.|++..+.+.. .+..+..++.++.|++.+|.+. .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 68888888752 3334566788999999999987 5666677774 9999999999999 66678899999999999999
Q ss_pred cCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcch
Q 008072 132 LFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPD 211 (579)
Q Consensus 132 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~ 211 (579)
++. .+|...+..++|+.|++++|.+. .+|.....+..|++|.+++|... .....+..+.++..+.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 999 56665668899999999999998 66766667778999999988522 23445667788888889999887 4467
Q ss_pred hhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccC
Q 008072 212 QLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIA 263 (579)
Q Consensus 212 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~ 263 (579)
.+..+++++.|++++|.++. ++. +..+.+|+.|++++|.++..+|.....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhcc
Confidence 78889999999999999984 443 888999999999999999777755543
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=3.5e-11 Score=132.39 Aligned_cols=110 Identities=31% Similarity=0.493 Sum_probs=97.8
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
.++.|+|++|.+.|.+|..+..+++|++|+|++|.+.|.+|..++.+++|+.|+|++|++.+.+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhCC-CCCcEEEccCCcCCC
Q 008072 106 SSGVTGSIPQEFANL-KSLRILWASDNLFTG 135 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~ 135 (579)
+|+++|.+|..+..+ .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999888764 467788888887553
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=8.2e-12 Score=120.57 Aligned_cols=236 Identities=22% Similarity=0.279 Sum_probs=158.1
Q ss_pred hhhcCCCCCcEEEccCCcCCC----CCchhhcCCCCCcEEEeeccC---CCCCCcc-------ccCCCcCCcEEEeeccc
Q 008072 19 SELFMLRKLMDLNLGQNVLNG----SIPAEIGQLSNMQYLSLGINN---FTGRVPT-------ELGNLTKLISLSFSSNN 84 (579)
Q Consensus 19 ~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~-------~~~~l~~L~~L~Ls~n~ 84 (579)
+.+.....++.|+|++|.+.. .+...+.+.++|+..++++-- +...+|. ++-.+++|++|+||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344556677777777777653 233445556677777776531 1122333 23455678888888887
Q ss_pred CCCCCchh----hCCCCCCcEEEeccCCCCCCcch-------------hhhCCCCCcEEEccCCcCCCCC----chhhcC
Q 008072 85 FFGPLPKE----LGKLTSLQQLYIDSSGVTGSIPQ-------------EFANLKSLRILWASDNLFTGKI----PEFFGT 143 (579)
Q Consensus 85 l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~----p~~~~~ 143 (579)
+...-+.. +..+..|++|+|.+|.+...-.. ..+.-++|+.+..+.|++...- ...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 75444333 45677888888888877622111 1234468888888888886432 234556
Q ss_pred ccccceeeecCCcCCC----CchhhhhcCCCCCeeEcCCCCCCCCC----hhhhcCCCCCCEEEcccCcCCCCcchhh--
Q 008072 144 LTELADLRLQGTLLEG----PIPRSFRALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVSGKIPDQL-- 213 (579)
Q Consensus 144 l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~~~~~-- 213 (579)
.+.|+.+.+..|.+.. .+...+.++++|+.|+|.+|.++... ...++.+++|+.|++++|.+...-...+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 6788889988887753 23456788899999999998776653 3456678899999999998875533322
Q ss_pred ---cCCCCCCEEeccCCcCCCC----CchhccCCCCCcEEEecCccCC
Q 008072 214 ---GTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 214 ---~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 254 (579)
...|+|+.|.+.+|.|+.. +...+...+.|..|+|++|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2468999999999998753 2234556789999999999984
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=5.3e-12 Score=121.90 Aligned_cols=235 Identities=18% Similarity=0.250 Sum_probs=169.7
Q ss_pred hhhcCCCCCcEEEeeccCCCC----CCccccCCCcCCcEEEeecc---cCCCCCchh-------hCCCCCCcEEEeccCC
Q 008072 43 AEIGQLSNMQYLSLGINNFTG----RVPTELGNLTKLISLSFSSN---NFFGPLPKE-------LGKLTSLQQLYIDSSG 108 (579)
Q Consensus 43 ~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n---~l~~~~p~~-------l~~l~~L~~L~L~~n~ 108 (579)
..+..+..++.|+|++|.+.. .+...+.+.++|+..+++.- +....+|+. +..+++|+.|+||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345567789999999998862 34456677788999888863 222234443 4466799999999999
Q ss_pred CCCCcchh----hhCCCCCcEEEccCCcCCCCC-------------chhhcCccccceeeecCCcCCCC----chhhhhc
Q 008072 109 VTGSIPQE----FANLKSLRILWASDNLFTGKI-------------PEFFGTLTELADLRLQGTLLEGP----IPRSFRA 167 (579)
Q Consensus 109 l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~ 167 (579)
+....+.. +.++..|++|.|.+|.+...- ....+.-+.|+++...+|++... +...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 87554433 557889999999999876211 12234567899999999998743 3446777
Q ss_pred CCCCCeeEcCCCCCCCCCh----hhhcCCCCCCEEEcccCcCCCC----cchhhcCCCCCCEEeccCCcCCCCCchhc--
Q 008072 168 LNKLEDLRIGDLSAEDSTL----DFLESQKSLSILSLRNCRVSGK----IPDQLGTFAKLQLLDLSFNKLTGQIPTSL-- 237 (579)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-- 237 (579)
.+.|+.+++..|.+..... ..+..+++|+.|||.+|-++.. +...++.+++|+.|++++|.+...-..++
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 8899999999998876643 4567889999999999988743 34456778899999999999876543332
Q ss_pred ---cCCCCCcEEEecCccCCCCCCcc-----ccCCCCcEEEcccCCCC
Q 008072 238 ---QDLSTLQYLYLGNNNLSGELPVN-----IIAPNLIALDVSYNPLS 277 (579)
Q Consensus 238 ---~~l~~L~~L~L~~N~l~~~ip~~-----~~~~~L~~Ldls~N~l~ 277 (579)
...++|+.|.+.+|.++-.--.. ...+.|..|+|++|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 23689999999999887321100 11488999999999995
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.4e-12 Score=132.84 Aligned_cols=190 Identities=26% Similarity=0.415 Sum_probs=146.8
Q ss_pred EEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeeccc
Q 008072 5 HLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 84 (579)
Q Consensus 5 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 84 (579)
..||+.|.+. .+|..++.+..|+.|.|+.|.+. .+|..++++..|++|||+.|+++ .+|..+..|+ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 4677777766 67888888888888899888887 78888888888999999999888 7777777664 8888888888
Q ss_pred CCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhh
Q 008072 85 FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRS 164 (579)
Q Consensus 85 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 164 (579)
+. .+|..++.+..|.+|+.+.|.+. .+|..+..+.+|+.|.+..|.+. .+|..+..+ .|..||++.|++. .+|-.
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 76 77888888888889999888888 67888888888888888888888 566666644 4788888888887 77888
Q ss_pred hhcCCCCCeeEcCCCCCCCCChhhh-cC-CCCCCEEEcccC
Q 008072 165 FRALNKLEDLRIGDLSAEDSTLDFL-ES-QKSLSILSLRNC 203 (579)
Q Consensus 165 ~~~l~~L~~L~l~~~~~~~~~~~~l-~~-~~~L~~L~Ls~n 203 (579)
|.+++.|++|-|.+|.+..-..... .+ ..--++|+..-|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8888888888888877665433321 11 122255665555
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.5e-12 Score=124.42 Aligned_cols=207 Identities=24% Similarity=0.258 Sum_probs=95.4
Q ss_pred CCCCCcEEEccCCcCCCCCc--hhhcCCCCCcEEEeeccCCCCCC--ccccCCCcCCcEEEeecccCCCCCchh-hCCCC
Q 008072 23 MLRKLMDLNLGQNVLNGSIP--AEIGQLSNMQYLSLGINNFTGRV--PTELGNLTKLISLSFSSNNFFGPLPKE-LGKLT 97 (579)
Q Consensus 23 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~ 97 (579)
++++|+.+.|.++.+.. .+ .....|++++.|||+.|-+..-. ..-...+++|+.|+|+.|++.....+. -..++
T Consensus 119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 44555555555554431 11 23344555555555555443211 111234455555555555443221111 11234
Q ss_pred CCcEEEeccCCCCCC-cchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEc
Q 008072 98 SLQQLYIDSSGVTGS-IPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 176 (579)
Q Consensus 98 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 176 (579)
.|+.|.|+.|+++.. +-..+..+|+|+.|+|..|. ....-......++.|++|+|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~------------------------~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE------------------------IILIKATSTKILQTLQELDL 253 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc------------------------ccceecchhhhhhHHhhccc
Confidence 455555555555421 11223344455555555443 11111112223344444555
Q ss_pred CCCCCCCCC-hhhhcCCCCCCEEEcccCcCCCC-cchh-----hcCCCCCCEEeccCCcCCCCCc--hhccCCCCCcEEE
Q 008072 177 GDLSAEDST-LDFLESQKSLSILSLRNCRVSGK-IPDQ-----LGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLY 247 (579)
Q Consensus 177 ~~~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~ 247 (579)
++|.+.... ......++.|+.|+++.|.+... .|+. ...+++|++|+++.|++.. .+ ..+..+++|+.|.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhh
Confidence 544443332 23334455555566666555432 2221 2446778888888887752 22 1344456777777
Q ss_pred ecCccCCC
Q 008072 248 LGNNNLSG 255 (579)
Q Consensus 248 L~~N~l~~ 255 (579)
+..|.++.
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 77777764
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.2e-11 Score=119.60 Aligned_cols=207 Identities=21% Similarity=0.152 Sum_probs=106.6
Q ss_pred CCcCCcEEEeecccCCCCCc--hhhCCCCCCcEEEeccCCCCCC--cchhhhCCCCCcEEEccCCcCCCCCchh-hcCcc
Q 008072 71 NLTKLISLSFSSNNFFGPLP--KELGKLTSLQQLYIDSSGVTGS--IPQEFANLKSLRILWASDNLFTGKIPEF-FGTLT 145 (579)
Q Consensus 71 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~ 145 (579)
++++|+...|.++... ..+ .....|++++.|+|+.|-+... +-.....+|+|+.|+|+.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3455666666555543 112 2344566666666666655422 1233445666666666666654222111 12456
Q ss_pred ccceeeecCCcCCCC-chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCc-chhhcCCCCCCEEe
Q 008072 146 ELADLRLQGTLLEGP-IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI-PDQLGTFAKLQLLD 223 (579)
Q Consensus 146 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 223 (579)
+|+.|.++.|.++.. +-..+..+++|+.|.+..|...........-+..|+.|||++|++-..- ....+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 666777777766532 2223445566677776666422222222333456667777776654221 12345566667777
Q ss_pred ccCCcCCCC-Cchh-----ccCCCCCcEEEecCccCCCC--CCccccCCCCcEEEcccCCCCC
Q 008072 224 LSFNKLTGQ-IPTS-----LQDLSTLQYLYLGNNNLSGE--LPVNIIAPNLIALDVSYNPLSG 278 (579)
Q Consensus 224 Ls~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~--ip~~~~~~~L~~Ldls~N~l~~ 278 (579)
++.|.+... .|+. ...+++|++|++..|++... +-....+++|+.|.+..|.|+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 776666542 2221 23456667777777766421 1111124566666666666653
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=8.8e-11 Score=132.05 Aligned_cols=106 Identities=30% Similarity=0.383 Sum_probs=55.8
Q ss_pred CCCcEEEccCCc--CCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEE
Q 008072 25 RKLMDLNLGQNV--LNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 102 (579)
Q Consensus 25 ~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 102 (579)
++|++|-+..|. +....+..|..++.|++|||++|.--+.+|..++++-+|++|++++..+. .+|..+++|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 345555555553 33222333455555555555555444455555555555555555555554 455555555555555
Q ss_pred EeccCCCCCCcchhhhCCCCCcEEEccCC
Q 008072 103 YIDSSGVTGSIPQEFANLKSLRILWASDN 131 (579)
Q Consensus 103 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 131 (579)
++..+.....+|.....+.+|++|.+-..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 55555444334444444555555555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.5e-10 Score=103.61 Aligned_cols=109 Identities=28% Similarity=0.394 Sum_probs=26.6
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhc-CCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhh-CCCCC
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIG-QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKEL-GKLTS 98 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~ 98 (579)
+.+..++++|+|.+|.++. +. .++ .+.+|+.|+|++|.++ .+. .+..+++|++|++++|+++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 3444556666666666652 22 233 3556666666666665 222 355566666666666666532 2222 24566
Q ss_pred CcEEEeccCCCCCCc-chhhhCCCCCcEEEccCCcCC
Q 008072 99 LQQLYIDSSGVTGSI-PQEFANLKSLRILWASDNLFT 134 (579)
Q Consensus 99 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 134 (579)
|++|++++|++...- -..+..+++|+.|+|.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666666654211 123444555555555555443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=5.2e-10 Score=125.95 Aligned_cols=254 Identities=22% Similarity=0.273 Sum_probs=171.9
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccC--CCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCC
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN--FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTS 98 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 98 (579)
..+...++...+-+|.+. .++... ..++|++|-+..|. +.......|..++.|+.|||++|.-.+.+|..++.|.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344567888888888776 444443 34579999999986 44334445788999999999999887899999999999
Q ss_pred CcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCC--CCchhhhhcCCCCCeeEc
Q 008072 99 LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE--GPIPRSFRALNKLEDLRI 176 (579)
Q Consensus 99 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l 176 (579)
|++|+++++.+. .+|..+.++.+|.+|++..+.....+|.....+.+|++|.+...... ...-..+.++..|+.+.+
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999999 89999999999999999998877777777778999999999776522 223334556666666665
Q ss_pred CCCCCCCCChhhhcCCCCCC----EEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccC------CCCCcEE
Q 008072 177 GDLSAEDSTLDFLESQKSLS----ILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD------LSTLQYL 246 (579)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L 246 (579)
..... .....+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.++......... ++++..+
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 43322 1112222333332 2333333332 34455778889999999999887443322111 2233333
Q ss_pred EecCccCCCCCCccccCCCCcEEEcccCCCCCCC
Q 008072 247 YLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNL 280 (579)
Q Consensus 247 ~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~ 280 (579)
.+.++.....+....+.++|+.|.+.++..-..+
T Consensus 753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred HhhccccccccchhhccCcccEEEEecccccccC
Confidence 4444443323333446799999999988865443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.5e-10 Score=108.00 Aligned_cols=223 Identities=21% Similarity=0.207 Sum_probs=134.5
Q ss_pred CCCCcEEEeeccC--------CCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhC
Q 008072 48 LSNMQYLSLGINN--------FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFAN 119 (579)
Q Consensus 48 l~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 119 (579)
+..|++|-.+... +...+|-.+.-+.+|+.+.++++.-..+..- ...-|.|+++.+.+..++. .|. +-.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~-~~~kptl~t~~v~~s~~~~-~~~-l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDI-ELLKPTLQTICVHNTTIQD-VPS-LLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheece-eecCchhheeeeecccccc-ccc-ccc
Confidence 4556666665432 1223344444566777777777653322111 1123567777666554441 111 111
Q ss_pred CCCCcEEEccC-CcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEE
Q 008072 120 LKSLRILWASD-NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSIL 198 (579)
Q Consensus 120 l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 198 (579)
...+..+.-+. .-..|..-..+..+..|++||++.|.++ .+.++..-++.++.|+++.|.+..... ++.+++|+.|
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~L 334 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLL 334 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhhcccceEe
Confidence 11111111111 1122333344556778888999888887 566677778888888888887765443 7778888888
Q ss_pred EcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCC--CccccCCCCcEEEcccCCC
Q 008072 199 SLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL--PVNIIAPNLIALDVSYNPL 276 (579)
Q Consensus 199 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i--p~~~~~~~L~~Ldls~N~l 276 (579)
||++|.++ .+..|-..+-+++.|.|++|.|.. -..+..+-+|..||+++|++...- -....+|-|+.+.|.+|++
T Consensus 335 DLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 335 DLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 88888887 444455567788888888888752 234667778888888888876321 1122367788888888888
Q ss_pred CCC
Q 008072 277 SGN 279 (579)
Q Consensus 277 ~~~ 279 (579)
.+.
T Consensus 412 ~~~ 414 (490)
T KOG1259|consen 412 AGS 414 (490)
T ss_pred ccc
Confidence 754
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2e-10 Score=108.62 Aligned_cols=129 Identities=25% Similarity=0.287 Sum_probs=69.7
Q ss_pred CCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcC
Q 008072 98 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIG 177 (579)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 177 (579)
-|++|||++|.++ .+..+..-+|+++.|+++.|.+.. + +.+..+++|+.||+++|.++ .+..+-..+-++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3445555555544 333333444555555555555441 1 12444455555555555444 222233334445555555
Q ss_pred CCCCCCCChhhhcCCCCCCEEEcccCcCCCC-cchhhcCCCCCCEEeccCCcCCCC
Q 008072 178 DLSAEDSTLDFLESQKSLSILSLRNCRVSGK-IPDQLGTFAKLQLLDLSFNKLTGQ 232 (579)
Q Consensus 178 ~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (579)
+|.+.. ...+..+-+|..||+++|+|... -...++++|.|++|.|.+|.+.+.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 543322 22234456778888888888633 233578899999999999998743
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=1.6e-09 Score=98.33 Aligned_cols=81 Identities=25% Similarity=0.278 Sum_probs=25.4
Q ss_pred CccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC-ChhhhcCCCCCCEEEcccCcCCCCcch----hhcCCC
Q 008072 143 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRVSGKIPD----QLGTFA 217 (579)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~ 217 (579)
.+++|++|++++|+++...+.....+++|++|.+++|.+... ....+..+++|+.|+|.+|.+... +. .+..+|
T Consensus 62 ~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP 140 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLP 140 (175)
T ss_dssp --TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-T
T ss_pred ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcC
Confidence 344444444444444422111112344444444444444332 234455566666666666666532 21 244556
Q ss_pred CCCEEec
Q 008072 218 KLQLLDL 224 (579)
Q Consensus 218 ~L~~L~L 224 (579)
+|+.||-
T Consensus 141 ~Lk~LD~ 147 (175)
T PF14580_consen 141 SLKVLDG 147 (175)
T ss_dssp T-SEETT
T ss_pred hhheeCC
Confidence 6666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.8e-10 Score=121.33 Aligned_cols=126 Identities=28% Similarity=0.336 Sum_probs=54.6
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEe
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 104 (579)
..++.+.+..|.+. .+-..+..+++|+.|++.+|++.. +...+..+++|++|++++|.+.... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 33444444444444 222334444555555555555542 2222344555555555555544322 2333444555555
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCc-hhhcCccccceeeecCCcC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLL 157 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l 157 (579)
++|.++. ...+..+++|+.+++++|.+...-+ . ...+.+|+.+++.+|.+
T Consensus 148 ~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 5555542 1222334455555555555442222 1 23344444444444444
No 42
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.73 E-value=1.1e-07 Score=97.22 Aligned_cols=112 Identities=29% Similarity=0.421 Sum_probs=76.2
Q ss_pred CCHHhHhhhcccC--CCcccccCCCC--Cc-eEEEEEeeeeeeecCCcCccc-ccceEEEEEEcCeEecccCchhhhhCC
Q 008072 396 LDSELYKTARISP--SSLRYYGLGLE--NG-KYRIDLHFAEITMEDSLSWKG-LGRRVFDVYIQGERVLRDLNIKKEAGG 469 (579)
Q Consensus 396 ~p~~ly~t~r~~~--~~l~~~~~~~~--~g-~y~v~l~F~e~~~~~~~~~~~-~~~r~F~V~i~~~~~~~~~di~~~~~~ 469 (579)
.....|+|+|.++ .... |.|++. .| .|+||+||.-..+... .... ...-.|+++++.... ...++.. .
T Consensus 46 ~~~~~y~taR~F~~g~r~c-Y~l~~~~~~~~~yliRl~F~~gnyd~~-~fs~~~~~~~FdL~~~~n~~-~tV~~~~-~-- 119 (347)
T PF12819_consen 46 DSSPPYQTARIFPEGSRNC-YTLPVTPPGGGKYLIRLHFYYGNYDGL-NFSVSSSPPTFDLLLGFNFW-STVNLSN-S-- 119 (347)
T ss_pred ccccccceEEEcCCCCccE-EEeeccCCCCceEEEEEEecccccccc-ccccccCCcceEEEECCcee-EEEEecC-C--
Confidence 3567899999987 3455 899876 33 9999999976652210 0000 124569999987654 2333322 1
Q ss_pred CCceEEEEEEEEec-CCeEEEEEEecCCCCccccCCCccCceeeeEEEEecccC
Q 008072 470 SKRALVKTFEANVT-NTIIEIHFFWAGKGTCCIPFQGTYGPLVSAIHASQVSTG 522 (579)
Q Consensus 470 ~~~~~~~~~~v~~~-~~~l~i~~~~~~~g~~~~~~~~~~~~~ln~iei~~~~~~ 522 (579)
...+++|+|++.++ ++.+.|-|.-.+. |.+ ||||||||+++-+.
T Consensus 120 ~~~~~~~E~ii~v~~~~~l~vclv~~~~--------g~~-pFIsaiEl~~lp~~ 164 (347)
T PF12819_consen 120 PSSPVVKEFIINVTWSDTLSVCLVPTGS--------GTF-PFISAIELRPLPDS 164 (347)
T ss_pred CcceEEEEEEEEEcCCCcEEEEEEeCCC--------CCC-CceeEEEEEECCcc
Confidence 23689999999999 6889999844433 322 99999999998653
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.2e-09 Score=115.10 Aligned_cols=128 Identities=24% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEE
Q 008072 47 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 126 (579)
Q Consensus 47 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 126 (579)
.+..++.+++..|.+. .+-..+..+++|+.|++.+|.+... ...+..+++|++|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 4455666666666665 2233355666666777776666532 222455666666666666666322 23445556666
Q ss_pred EccCCcCCCCCchhhcCccccceeeecCCcCCCCch-hhhhcCCCCCeeEcCCCCC
Q 008072 127 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP-RSFRALNKLEDLRIGDLSA 181 (579)
Q Consensus 127 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~~~~ 181 (579)
++++|.+... ..+..++.|+.+++++|++...-+ . ...+.+|+.+.+.+|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 6666666521 223335566666666666553222 1 34445555555555443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=8.6e-09 Score=76.83 Aligned_cols=59 Identities=36% Similarity=0.489 Sum_probs=33.9
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeeccc
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN 84 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 84 (579)
+|++|++++|.++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666654334455556666666666666654444555666666666666554
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.3e-08 Score=75.84 Aligned_cols=61 Identities=39% Similarity=0.588 Sum_probs=45.1
Q ss_pred CCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccC
Q 008072 193 KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 253 (579)
Q Consensus 193 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 253 (579)
|+|++|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777888877744445677778888888888888766666777788888888877764
No 46
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.64 E-value=2.5e-08 Score=93.35 Aligned_cols=117 Identities=28% Similarity=0.456 Sum_probs=86.1
Q ss_pred ccccccCCcccccCCCceeecCCC-CcccceEEeeCCCeeEEcccccccCCCCCCcccccccccccCCCCHHhHhhhccc
Q 008072 329 SFSIKCGGTQIASASGIEFDDDSK-TLEAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARIS 407 (579)
Q Consensus 329 ~~~~nCgg~~~~~~~~~~~~~d~~-~~g~~~~~~~~~~~W~~s~~g~~~~~~~~~~~~~~s~~~~~~~~p~~ly~t~r~~ 407 (579)
-+.+||||+...+..+..|..|.. ..|.++-| |.. -.+..+.. ..+..+|+|+|+.
T Consensus 61 I~aVncGgdaavd~ygI~f~aD~~~~VGrasd~---G~~------l~i~~rae--------------eed~ily~ter~n 117 (355)
T KOG3593|consen 61 IPAVNCGGDAAVDNYGIRFAADPLEGVGRASDY---GMV------LGIGCRAE--------------EEDIILYQTERYN 117 (355)
T ss_pred hheeccCChhhhcccceEeeccccccccccCCc---cce------eeccccCC--------------hhhhhhhhhcccc
Confidence 467899999988878888988753 22443322 111 11111111 2356799999999
Q ss_pred CCCcccccCCCCC-ceEEEEEeeeeeeecCCcCcccccceEEEEEEc-CeEecccCchhhhhCCCCceEE
Q 008072 408 PSSLRYYGLGLEN-GKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQ-GERVLRDLNIKKEAGGSKRALV 475 (579)
Q Consensus 408 ~~~l~~~~~~~~~-g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~-~~~~~~~~di~~~~~~~~~~~~ 475 (579)
...+. |+.+.+. |.|.+.|.|||.+ +...+..+|||.+| +..+.++.||+.+.|+.+.|..
T Consensus 118 eetFg-yd~pik~dgdyalvlkfaevy------F~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhD 180 (355)
T KOG3593|consen 118 EETFG-YDVPIKEDGDYALVLKFAEVY------FKTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHD 180 (355)
T ss_pred hhhhc-ccccccCCCceehhhhHHHHH------HHhhhhhheeeeeccceeEEeccchhhhcCCCccccc
Confidence 77766 7776654 7999999999997 56778899999999 9999999999999998777753
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.7e-08 Score=95.82 Aligned_cols=119 Identities=20% Similarity=0.220 Sum_probs=75.2
Q ss_pred cccchhhcCCCCCcEEEccCCcCCCCC-chhhc-CCCCCcEEEeeccCCCC--CCccccCCCcCCcEEEeecccCCCCCc
Q 008072 15 VTLPSELFMLRKLMDLNLGQNVLNGSI-PAEIG-QLSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLP 90 (579)
Q Consensus 15 ~~lp~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~-~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p 90 (579)
|..+..++...-++.|.+.++.+...- ...|+ .++.++.|||.+|.|+. .+-.-+.+|+.|+.|+|+.|++...+.
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 334444444555667777777665321 12233 45678888888888872 233345678888888888888875443
Q ss_pred hhhCCCCCCcEEEeccCCCCCC-cchhhhCCCCCcEEEccCCcC
Q 008072 91 KELGKLTSLQQLYIDSSGVTGS-IPQEFANLKSLRILWASDNLF 133 (579)
Q Consensus 91 ~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l 133 (579)
..-..+.+|+.|-|.+..+.-. ....+..+|+++.|.++.|.+
T Consensus 115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 3223456788888877776532 334456777888888887743
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.8e-09 Score=98.01 Aligned_cols=176 Identities=20% Similarity=0.187 Sum_probs=103.5
Q ss_pred CCcEEEeecccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCc-CCCCC-chhhcCcccccee
Q 008072 74 KLISLSFSSNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL-FTGKI-PEFFGTLTELADL 150 (579)
Q Consensus 74 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L 150 (579)
.|++|||++..++. .+...+..+.+|+.|.|.++++...+-..+++-.+|+.|+|+.+. ++..- .-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667776655431 122234456667777777777776666666666777777776653 22111 1124566777777
Q ss_pred eecCCcCCCCchh-hhhcC-CCCCeeEcCCCCCCCC--Chhh-hcCCCCCCEEEcccCcC-CCCcchhhcCCCCCCEEec
Q 008072 151 RLQGTLLEGPIPR-SFRAL-NKLEDLRIGDLSAEDS--TLDF-LESQKSLSILSLRNCRV-SGKIPDQLGTFAKLQLLDL 224 (579)
Q Consensus 151 ~l~~n~l~~~~p~-~~~~l-~~L~~L~l~~~~~~~~--~~~~-l~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L 224 (579)
+++.|.+....-. .+.+. .+|+.|+|+++.-... .... ...+++|..|||++|.. +...-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777766543322 22222 4666777776642221 2222 24578888888888753 3333345667788888888
Q ss_pred cCCcCCCCCchh---ccCCCCCcEEEecCc
Q 008072 225 SFNKLTGQIPTS---LQDLSTLQYLYLGNN 251 (579)
Q Consensus 225 s~n~l~~~~p~~---l~~l~~L~~L~L~~N 251 (579)
+.|-. .+|.. +...++|.+|++-++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 87764 35543 455678888888765
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6e-09 Score=98.80 Aligned_cols=236 Identities=19% Similarity=0.192 Sum_probs=147.3
Q ss_pred eEEEEeCcccccccchhhcCC--CCCcEEEccCCcCCCC-CchhhcCC-CCCcEEEeeccCCCC-CCccccCCCcCCcEE
Q 008072 4 GHLKMRILVLLVTLPSELFML--RKLMDLNLGQNVLNGS-IPAEIGQL-SNMQYLSLGINNFTG-RVPTELGNLTKLISL 78 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l--~~L~~L~Ls~n~l~~~-~p~~l~~l-~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 78 (579)
+.+|+.+-.+. |..+..+ ..+..+.+........ +.+.+.-+ +.||+|||+...++. .+-.-+..+.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 34555555544 3333333 2345555554333322 22222222 348889998887762 222345677888899
Q ss_pred EeecccCCCCCchhhCCCCCCcEEEeccCC-CCCC-cchhhhCCCCCcEEEccCCcCCCCCch-hhcC-ccccceeeecC
Q 008072 79 SFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTGS-IPQEFANLKSLRILWASDNLFTGKIPE-FFGT-LTELADLRLQG 154 (579)
Q Consensus 79 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~-l~~L~~L~l~~ 154 (579)
.|.++++.+.+...+.+-.+|+.|+|+.+. ++.. ..-.+.+++.|..|+|+.|.+....-. .+.. -++|+.|++++
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 999998888888888888889999988754 3311 123367888899999998877633221 1121 25788889888
Q ss_pred CcCC---CCchhhhhcCCCCCeeEcCCCC-CCCCChhhhcCCCCCCEEEcccCcCCCCcch---hhcCCCCCCEEeccCC
Q 008072 155 TLLE---GPIPRSFRALNKLEDLRIGDLS-AEDSTLDFLESQKSLSILSLRNCRVSGKIPD---QLGTFAKLQLLDLSFN 227 (579)
Q Consensus 155 n~l~---~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n 227 (579)
++-. ..+..-...+++|..|+++++. +.......+..++.|++|.++.|.. .+|. .+..+|+|.+||+.++
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 7532 2233344678999999999875 3333445667889999999999864 3444 3577899999999876
Q ss_pred cCCCCCchhccCCCCCc
Q 008072 228 KLTGQIPTSLQDLSTLQ 244 (579)
Q Consensus 228 ~l~~~~p~~l~~l~~L~ 244 (579)
--.+..-.....+++|+
T Consensus 374 vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 374 VSDTTMELLKEMLSHLK 390 (419)
T ss_pred cCchHHHHHHHhCcccc
Confidence 54332222223445554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=1.2e-07 Score=89.06 Aligned_cols=235 Identities=19% Similarity=0.226 Sum_probs=145.8
Q ss_pred hcCCCCCcEEEccCCcCCCCCch----hhcCCCCCcEEEeeccCCC---CCCc-------cccCCCcCCcEEEeecccCC
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPA----EIGQLSNMQYLSLGINNFT---GRVP-------TELGNLTKLISLSFSSNNFF 86 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~Ls~n~l~ 86 (579)
+..+..++.++||+|.+...-.. .+.+-.+|+..++++--.. ..++ +++..|++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44466777778888777643333 3344466777766652211 1122 23556788888888888777
Q ss_pred CCCchh----hCCCCCCcEEEeccCCCCCC----cchhh---------hCCCCCcEEEccCCcCCCCCch----hhcCcc
Q 008072 87 GPLPKE----LGKLTSLQQLYIDSSGVTGS----IPQEF---------ANLKSLRILWASDNLFTGKIPE----FFGTLT 145 (579)
Q Consensus 87 ~~~p~~----l~~l~~L~~L~L~~n~l~~~----~~~~l---------~~l~~L~~L~L~~n~l~~~~p~----~~~~l~ 145 (579)
...|+. +..-+.|.||.+++|.+... +..++ +.-|.|+.+.+..|++...... .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 666654 44567788888888876522 22222 2347788888888887632211 122335
Q ss_pred ccceeeecCCcCCCC-----chhhhhcCCCCCeeEcCCCCCCCCCh----hhhcCCCCCCEEEcccCcCCCCcchh----
Q 008072 146 ELADLRLQGTLLEGP-----IPRSFRALNKLEDLRIGDLSAEDSTL----DFLESQKSLSILSLRNCRVSGKIPDQ---- 212 (579)
Q Consensus 146 ~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~~~~~---- 212 (579)
+|+++.+..|.+.-. +-..+..+.+|+.|+|.+|.++.... ..++.++.|+.|.+.+|-++..-...
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 788888888877532 11234556788888888887665533 34556777888888888876543332
Q ss_pred hc--CCCCCCEEeccCCcCCCCCchh-----c--cCCCCCcEEEecCccCCC
Q 008072 213 LG--TFAKLQLLDLSFNKLTGQIPTS-----L--QDLSTLQYLYLGNNNLSG 255 (579)
Q Consensus 213 ~~--~l~~L~~L~Ls~n~l~~~~p~~-----l--~~l~~L~~L~L~~N~l~~ 255 (579)
+. ..|+|..|...+|.+.+.+-.. + ..++-|..|.+.+|++..
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 11 2578888888888776543221 1 346777778888888873
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=2.3e-07 Score=87.17 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=162.0
Q ss_pred hcCCCCCcEEEeeccCCCCC----CccccCCCcCCcEEEeecccC---CCCCc-------hhhCCCCCCcEEEeccCCCC
Q 008072 45 IGQLSNMQYLSLGINNFTGR----VPTELGNLTKLISLSFSSNNF---FGPLP-------KELGKLTSLQQLYIDSSGVT 110 (579)
Q Consensus 45 l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~l~ 110 (579)
+..+..++.++||+|.|... +...+.+-.+|+..+++.-.. ...++ +.+.++|.|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44577899999999988632 344566677888888876421 12233 34567899999999999998
Q ss_pred CCcchh----hhCCCCCcEEEccCCcCCCCCch-------------hhcCccccceeeecCCcCCCCch----hhhhcCC
Q 008072 111 GSIPQE----FANLKSLRILWASDNLFTGKIPE-------------FFGTLTELADLRLQGTLLEGPIP----RSFRALN 169 (579)
Q Consensus 111 ~~~~~~----l~~l~~L~~L~L~~n~l~~~~p~-------------~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~ 169 (579)
...|.. +++...|++|.+++|.+...--. ....-+.|+......|++..-.. ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 766654 45678999999999987522111 12345689999999999863211 1233336
Q ss_pred CCCeeEcCCCCCCCCChhh-----hcCCCCCCEEEcccCcCCCC----cchhhcCCCCCCEEeccCCcCCCCCchhc---
Q 008072 170 KLEDLRIGDLSAEDSTLDF-----LESQKSLSILSLRNCRVSGK----IPDQLGTFAKLQLLDLSFNKLTGQIPTSL--- 237 (579)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l--- 237 (579)
.|+.+.+..|.+....... +..+.+|+.|||.+|.++-. +...++.++.|+.|.+..|-++..-..++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 8899999999887663332 34578999999999988743 23346677889999999998875543322
Q ss_pred ---cCCCCCcEEEecCccCCCCCCccc--------cCCCCcEEEcccCCCCC
Q 008072 238 ---QDLSTLQYLYLGNNNLSGELPVNI--------IAPNLIALDVSYNPLSG 278 (579)
Q Consensus 238 ---~~l~~L~~L~L~~N~l~~~ip~~~--------~~~~L~~Ldls~N~l~~ 278 (579)
...++|..|...+|...+.+-... .+|-|..|.+.+|++..
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 135788889999987765333221 24667778888888874
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.5e-07 Score=89.46 Aligned_cols=203 Identities=22% Similarity=0.241 Sum_probs=126.2
Q ss_pred CCCCCcEEEccCCcCCC--CCchhhcCCCCCcEEEeeccCCCCCCcccc-CCCcCCcEEEeecccCCCC-CchhhCCCCC
Q 008072 23 MLRKLMDLNLGQNVLNG--SIPAEIGQLSNMQYLSLGINNFTGRVPTEL-GNLTKLISLSFSSNNFFGP-LPKELGKLTS 98 (579)
Q Consensus 23 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~ 98 (579)
.+++++.|||.+|.++. .+...+.++|.|++|+|+.|.+...+- .+ ..+.+|+.|.|.+..+.-. ....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 47889999999999984 344556789999999999999984332 23 3567899999988766532 3455778999
Q ss_pred CcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCch--hhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEc
Q 008072 99 LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPE--FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRI 176 (579)
Q Consensus 99 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 176 (579)
+++|+++.|.+. .+.+.++......+. .+...+.+..+...-|++. ...+++..+.+
T Consensus 148 vtelHmS~N~~r--------------q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-------r~Fpnv~sv~v 206 (418)
T KOG2982|consen 148 VTELHMSDNSLR--------------QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-------RIFPNVNSVFV 206 (418)
T ss_pred hhhhhhccchhh--------------hhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-------hhcccchheee
Confidence 999999887554 233444433321111 0111112222222222221 22356666666
Q ss_pred CCCCCCCC-ChhhhcCCCCCCEEEcccCcCCCC-cchhhcCCCCCCEEeccCCcCCCCCch------hccCCCCCcEEE
Q 008072 177 GDLSAEDS-TLDFLESQKSLSILSLRNCRVSGK-IPDQLGTFAKLQLLDLSFNKLTGQIPT------SLQDLSTLQYLY 247 (579)
Q Consensus 177 ~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~ 247 (579)
.+|.+... .......++.+..|+|+.+++..- ..+.+..+++|..|.++++.+...+.. .++.+++++.|+
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 66655443 233445567777888888887632 234577788888888888887643321 245667777665
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=2.4e-08 Score=105.06 Aligned_cols=126 Identities=28% Similarity=0.254 Sum_probs=61.5
Q ss_pred cccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchh-hcCCCCCCEEe
Q 008072 145 TELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQ-LGTFAKLQLLD 223 (579)
Q Consensus 145 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~ 223 (579)
..|...+.+.|.+. .+..++.-++.|+.|+|+.|.+.... .+..+++|++|||+.|.+. .+|.. ...+ .|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 34555555555554 33445555555555555555443332 4445555666666666555 23321 1122 255566
Q ss_pred ccCCcCCCCCchhccCCCCCcEEEecCccCCCCC--CccccCCCCcEEEcccCCCC
Q 008072 224 LSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL--PVNIIAPNLIALDVSYNPLS 277 (579)
Q Consensus 224 Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i--p~~~~~~~L~~Ldls~N~l~ 277 (579)
|++|.++.. ..+.++++|+.||++.|-+.+.- -..+.+..|..|.|.+|++-
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666655521 12445555566666666554311 11222345555555555543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=1.4e-07 Score=79.67 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=62.6
Q ss_pred CcEEEccCCcCCCCCchhh---cCCCCCcEEEeeccCCCCCCccccCC-CcCCcEEEeecccCCCCCchhhCCCCCCcEE
Q 008072 27 LMDLNLGQNVLNGSIPAEI---GQLSNMQYLSLGINNFTGRVPTELGN-LTKLISLSFSSNNFFGPLPKELGKLTSLQQL 102 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 102 (579)
+-.++|+.|.+- .+++.. .+...|+..+|++|.+. .+|+.|.. .+.++.|++++|.++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445666666554 344433 33344555666666666 45554533 346666677777665 456666667777777
Q ss_pred EeccCCCCCCcchhhhCCCCCcEEEccCCcCC
Q 008072 103 YIDSSGVTGSIPQEFANLKSLRILWASDNLFT 134 (579)
Q Consensus 103 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 134 (579)
+++.|.+. ..|..+..+.+|-.|+.-+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 77777666 45666666666666766666665
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=3.8e-08 Score=103.60 Aligned_cols=125 Identities=25% Similarity=0.253 Sum_probs=58.2
Q ss_pred CcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecC
Q 008072 75 LISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQG 154 (579)
Q Consensus 75 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 154 (579)
|...+.+.|.+. .+..++.-++.|++|+|++|++... +.+..|++|++|||+.|.+. .+|..-..-.+|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 444445555443 3334444555555555555555521 24555555555555555555 3333211112355555555
Q ss_pred CcCCCCchhhhhcCCCCCeeEcCCCCCCCC-ChhhhcCCCCCCEEEcccCcC
Q 008072 155 TLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRV 205 (579)
Q Consensus 155 n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l 205 (579)
|.++.. ..+.+|.+|+.|+++.|-+... ....+..+..|+.|.|.+|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 554421 1244455555555555543332 223333444455555555544
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=2e-07 Score=78.66 Aligned_cols=131 Identities=22% Similarity=0.296 Sum_probs=87.2
Q ss_pred cceeeecCCcCCCCchhh---hhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEe
Q 008072 147 LADLRLQGTLLEGPIPRS---FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLD 223 (579)
Q Consensus 147 L~~L~l~~n~l~~~~p~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 223 (579)
+..++|++|.+. .+++. +.....|...+|++|.+...+......++.+++|+|++|.++ .+|+.+..|+.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445555555554 23333 333345555677777776666666667778888888888888 6777788888888888
Q ss_pred ccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccC-CCCcEEEcccCCCCCCCC
Q 008072 224 LSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIA-PNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 224 Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~-~~L~~Ldls~N~l~~~~p 281 (579)
+++|.+. ..|..+..+.+|-.|+..+|... .+|...+. ......++.++.+.+.-+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888887 55666666888888888888776 55544443 333345566666665544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=1.9e-05 Score=80.71 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=15.3
Q ss_pred CCCCEEeccCCcCCCCCchhccCCCCCcEEEecCc
Q 008072 217 AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNN 251 (579)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 251 (579)
++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45555555555543 2232222 35666666554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=8.5e-05 Score=75.98 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=22.8
Q ss_pred CcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCC
Q 008072 72 LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 131 (579)
Q Consensus 72 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 131 (579)
+.++++|++++|.+. .+|. -..+|++|.+++|.--..+|..+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 445555555555443 2231 112355555544332223333221 34455555544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=1.1e-05 Score=89.08 Aligned_cols=149 Identities=23% Similarity=0.244 Sum_probs=89.7
Q ss_pred cCCcEEEeecccC-CCCCchhhC-CCCCCcEEEeccCCCCC-CcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccce
Q 008072 73 TKLISLSFSSNNF-FGPLPKELG-KLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELAD 149 (579)
Q Consensus 73 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 149 (579)
.+|++|++++... +...|..++ .||+|+.|.+.+-.+.. .+.....++|+|..||+|+++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4677777776542 222333344 37788888777766542 2334456777888888888777633 56777788888
Q ss_pred eeecCCcCCC-CchhhhhcCCCCCeeEcCCCCCCCCCh------hhhcCCCCCCEEEcccCcCCCCcchhh-cCCCCCCE
Q 008072 150 LRLQGTLLEG-PIPRSFRALNKLEDLRIGDLSAEDSTL------DFLESQKSLSILSLRNCRVSGKIPDQL-GTFAKLQL 221 (579)
Q Consensus 150 L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~------~~l~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 221 (579)
|.+.+-.+.. ..-..+.+|++|+.|+++......... +.-..+|.|+.||.|+..+.+.+.+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8777766653 223356677888888887765444321 112346778888888777765544432 23344444
Q ss_pred Ee
Q 008072 222 LD 223 (579)
Q Consensus 222 L~ 223 (579)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.9e-05 Score=53.16 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=19.5
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCC
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT 62 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 62 (579)
+|++|++++|.++ .+|..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666655 34545555666666666665554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.4e-05 Score=88.42 Aligned_cols=134 Identities=24% Similarity=0.251 Sum_probs=61.1
Q ss_pred CCCcEEEccCCcCCCCC-chhhc-CCCCCcEEEeeccCCCC-CCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcE
Q 008072 25 RKLMDLNLGQNVLNGSI-PAEIG-QLSNMQYLSLGINNFTG-RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 101 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~-p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 101 (579)
.+|++||+++......- |..++ .||+|+.|.+++-.+.. .+..-..++++|..||+|+.+++.. ..+++|.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 34555555554322111 12222 35555555555544421 1122234555555566655555432 34555555555
Q ss_pred EEeccCCCCC-CcchhhhCCCCCcEEEccCCcCCCCC--ch----hhcCccccceeeecCCcCCCC
Q 008072 102 LYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKI--PE----FFGTLTELADLRLQGTLLEGP 160 (579)
Q Consensus 102 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p~----~~~~l~~L~~L~l~~n~l~~~ 160 (579)
|.+.+=.+.. ..-..+.+|++|+.||+|........ .. --..+++|+.||.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 5554444432 12234455566666666554433211 00 012355666666666555543
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4.3e-05 Score=52.26 Aligned_cols=36 Identities=44% Similarity=0.662 Sum_probs=18.0
Q ss_pred CCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCC
Q 008072 218 KLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 218 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 254 (579)
+|++|++++|+|+ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00018 Score=65.28 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=72.2
Q ss_pred CcEEEccCCcCCCCCchhhcC-CCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQ-LSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
=+.++|.+.++. .+.. ++. +.....+||++|.+. .+ +.|..++.|.+|.|.+|++..+-|.--..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 455666665543 1111 221 234667777777775 22 246667777777777777776555544456777777777
Q ss_pred cCCCCCCc-chhhhCCCCCcEEEccCCcCCCCCc---hhhcCccccceeeecCC
Q 008072 106 SSGVTGSI-PQEFANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRLQGT 155 (579)
Q Consensus 106 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~n 155 (579)
+|.+.... -.-+..+|+|++|.+-+|..+..-- -.+..+++|+.||+..-
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77766211 1235567777777777776652211 12445666666666543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00026 Score=64.28 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=17.6
Q ss_pred CCCCCCEEeccCCcCCCCC---chhccCCCCCcEEEecC
Q 008072 215 TFAKLQLLDLSFNKLTGQI---PTSLQDLSTLQYLYLGN 250 (579)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~L~~ 250 (579)
.+|.|++|.+-+|.++..- --.+..+++|+.||.++
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 4455555555555544211 01234556666666654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00016 Score=68.40 Aligned_cols=113 Identities=21% Similarity=0.171 Sum_probs=73.4
Q ss_pred CCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecc--cCCCCCchhhCCCCCCcEEEeccCCCCC-Ccchh
Q 008072 40 SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN--NFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQE 116 (579)
Q Consensus 40 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~ 116 (579)
.+......+..|+.|++.+..++. -..|..|++|++|.++.| ...+.++....++++|++|+++.|++.. ..-..
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred Ccccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 344444556667777777766652 224667888888888888 5555555556667899999999988873 11122
Q ss_pred hhCCCCCcEEEccCCcCCCCCc---hhhcCccccceeeecC
Q 008072 117 FANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRLQG 154 (579)
Q Consensus 117 l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~ 154 (579)
+..+.+|..|++.+|..+...- ..+.-+++|+.|+-..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 4566778888998887764211 2344567777776543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00023 Score=67.35 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=73.7
Q ss_pred CccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccC--CCCCCcchhhhCCCCCcEEEccCCcCCCCCch---
Q 008072 65 VPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS--GVTGSIPQEFANLKSLRILWASDNLFTGKIPE--- 139 (579)
Q Consensus 65 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--- 139 (579)
+......+..|+.|++.+..++.. ..+-.|++|+.|.++.| ...+.++....++|+|++|.+++|++.. ++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 444445566777777776655422 23556789999999999 5666666666677999999999998873 22
Q ss_pred hhcCccccceeeecCCcCCCCc---hhhhhcCCCCCeeEcCC
Q 008072 140 FFGTLTELADLRLQGTLLEGPI---PRSFRALNKLEDLRIGD 178 (579)
Q Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~---p~~~~~l~~L~~L~l~~ 178 (579)
.+..+.+|..|++.+|.-...- -..|.-+++|++|+=.+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 2456677888888888765421 22455567777776443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.96 E-value=0.0016 Score=56.18 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCc
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 100 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 100 (579)
|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-..+|.++++|+.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 55566677776664 344333445666666676666654 4433334566666666666644 22222223444556666
Q ss_pred EEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 101 QLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 101 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
.+.+..+ +...-...+.++ +|+.+.+.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 6666443 332222334443 55555444
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.91 E-value=6.1e-05 Score=75.33 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=15.4
Q ss_pred CCCCCcEEEccCCc-CCCCCchhh-cCCCCCcEEEeec
Q 008072 23 MLRKLMDLNLGQNV-LNGSIPAEI-GQLSNMQYLSLGI 58 (579)
Q Consensus 23 ~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~ 58 (579)
+++++++|.+.+|. +++..-.++ ..+++|++|+|..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~ 199 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS 199 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc
Confidence 35555555555553 222111222 2344555555544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.86 E-value=0.002 Score=55.57 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred hhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCC
Q 008072 44 EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 123 (579)
Q Consensus 44 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 123 (579)
.|.++++|+.+.+.. .+...-..+|.++++|+.+.+.++ +...-...+.++.+|+.+.+.. .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355566666666653 344333445666666666666553 4333333455555666666643 3222223344445555
Q ss_pred cEEEccC
Q 008072 124 RILWASD 130 (579)
Q Consensus 124 ~~L~L~~ 130 (579)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0001 Score=70.01 Aligned_cols=99 Identities=25% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCc-hhhCCCCCCcEE
Q 008072 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLP-KELGKLTSLQQL 102 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L 102 (579)
+.+++.|+..+|.+++ + +...+++.|++|.|+-|+|+..- .|..+++|++|+|..|.+...-. .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 5567788888888773 2 23456788888888888887332 25667777777777776653211 224566666666
Q ss_pred EeccCCCCCCcch-----hhhCCCCCcEE
Q 008072 103 YIDSSGVTGSIPQ-----EFANLKSLRIL 126 (579)
Q Consensus 103 ~L~~n~l~~~~~~-----~l~~l~~L~~L 126 (579)
.|..|.=.|.-+. .+..||+|++|
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhc
Confidence 6665554433322 23444555544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.63 E-value=0.00035 Score=75.14 Aligned_cols=234 Identities=22% Similarity=0.134 Sum_probs=130.6
Q ss_pred CCCCCcEEEccCCcCCCC--CchhhcCCCCCcEEEeecc-CCCCCCc----cccCCCcCCcEEEeeccc-CCCCCchhhC
Q 008072 23 MLRKLMDLNLGQNVLNGS--IPAEIGQLSNMQYLSLGIN-NFTGRVP----TELGNLTKLISLSFSSNN-FFGPLPKELG 94 (579)
Q Consensus 23 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~ 94 (579)
.++.|+.|.+..+.-... +-.....++.|+.|+++++ ......+ .....+.+|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478899999998843322 3344567889999999873 2211111 233456889999999887 5544333444
Q ss_pred C-CCCCcEEEeccCC-CCCC-cchhhhCCCCCcEEEccCCcCCCC--CchhhcCccccceeeecCCcCCCCchhhhhcCC
Q 008072 95 K-LTSLQQLYIDSSG-VTGS-IPQEFANLKSLRILWASDNLFTGK--IPEFFGTLTELADLRLQGTLLEGPIPRSFRALN 169 (579)
Q Consensus 95 ~-l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 169 (579)
. +++|++|.+..+. ++.. +-.....+++|++|+++.|..... +.....++++|+.|.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 3 7899999987776 4432 223345688899999998876411 222334466666655433221 33
Q ss_pred CCCeeEcCCCCCC---CCChhhhcCCCCCCEEEcccCcCCCCc-chhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcE
Q 008072 170 KLEDLRIGDLSAE---DSTLDFLESQKSLSILSLRNCRVSGKI-PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQY 245 (579)
Q Consensus 170 ~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 245 (579)
.++.+.+..+... .........++.|+.+.+..+...... ...+..++.|. ..+.. ......+++.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~ 405 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRV 405 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccce
Confidence 4444444433221 122334566788888888887744322 23344555552 21111 1111222778
Q ss_pred EEecCccCCCCCCccc--c-CCCCcEEEcccCCC
Q 008072 246 LYLGNNNLSGELPVNI--I-APNLIALDVSYNPL 276 (579)
Q Consensus 246 L~L~~N~l~~~ip~~~--~-~~~L~~Ldls~N~l 276 (579)
|+++.+......--.. . +..+..+++.++..
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCccc
Confidence 8888776542111000 0 34556666666653
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.50 E-value=0.00049 Score=74.00 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=10.5
Q ss_pred hcCCCCCCEEeccCCcC
Q 008072 213 LGTFAKLQLLDLSFNKL 229 (579)
Q Consensus 213 ~~~l~~L~~L~Ls~n~l 229 (579)
...++.++.+.+..+.+
T Consensus 358 ~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HhcCCCcchhhhhhhhc
Confidence 44566666666666663
No 73
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=96.25 E-value=0.0053 Score=53.02 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=14.6
Q ss_pred cccceEEEEehhHHHHHHHHHHH
Q 008072 531 KHVGKIVGITVGCAAALVIISSV 553 (579)
Q Consensus 531 ~~~~~~~g~~~g~~~~~~~~~~~ 553 (579)
+.+.+|||++||+.+++++++++
T Consensus 46 knknIVIGvVVGVGg~ill~il~ 68 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPILLGILA 68 (154)
T ss_pred CCccEEEEEEecccHHHHHHHHH
Confidence 34568999999966554443333
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00042 Score=65.91 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred CccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC-ChhhhcCCCCCCEEEcccCcC
Q 008072 143 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLESQKSLSILSLRNCRV 205 (579)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~Ls~n~l 205 (579)
.++.|+.|.|+-|.++..-| +..|++|++|.|..|.+.+. ....+.++|+|+.|.|..|.-
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 34444444444444432211 33344444444444433332 122334444444444444443
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.15 E-value=0.0004 Score=69.69 Aligned_cols=251 Identities=18% Similarity=0.100 Sum_probs=143.9
Q ss_pred CeeEEEEeCcc-cccccchhhc-CCCCCcEEEccCC-cCCCCCchh-hcCCCCCcEEEeeccC-CCCC-CccccCCCcCC
Q 008072 2 PHGHLKMRILV-LLVTLPSELF-MLRKLMDLNLGQN-VLNGSIPAE-IGQLSNMQYLSLGINN-FTGR-VPTELGNLTKL 75 (579)
Q Consensus 2 ~L~~L~l~~~~-l~~~lp~~l~-~l~~L~~L~Ls~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L 75 (579)
|+++|.+.++. ++...-..+. .+++|++|+|..| .++...-.. -..+++|++|+++.+. +++. +..-+.+++.|
T Consensus 165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l 244 (483)
T KOG4341|consen 165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKEL 244 (483)
T ss_pred chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhh
Confidence 45566666663 4443333443 4889999999985 455433332 2468999999998774 3331 22234566777
Q ss_pred cEEEeecccCCCCCchhh----CCCCCCcEEEeccCC-CCCCc-chhhhCCCCCcEEEccCCcCCCCCc--hhhcCcccc
Q 008072 76 ISLSFSSNNFFGPLPKEL----GKLTSLQQLYIDSSG-VTGSI-PQEFANLKSLRILWASDNLFTGKIP--EFFGTLTEL 147 (579)
Q Consensus 76 ~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L 147 (579)
+.+.+.++.-.+ -+.+ +...-+..+++.+|. ++..- ...-..+..|+.|+.+++...+..+ .-..+..+|
T Consensus 245 ~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 245 EKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred hhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 777777653211 1111 123334555554543 22111 1111245678888887765432211 122456788
Q ss_pred ceeeecCCcC-CCCchhhh-hcCCCCCeeEcCCCCCCCCC-hhh-hcCCCCCCEEEcccCcCC-CCc----chhhcCCCC
Q 008072 148 ADLRLQGTLL-EGPIPRSF-RALNKLEDLRIGDLSAEDST-LDF-LESQKSLSILSLRNCRVS-GKI----PDQLGTFAK 218 (579)
Q Consensus 148 ~~L~l~~n~l-~~~~p~~~-~~l~~L~~L~l~~~~~~~~~-~~~-l~~~~~L~~L~Ls~n~l~-~~~----~~~~~~l~~ 218 (579)
+.|-++.++. +..-...+ .++..|+.+++.++...... ... -.+++.|+.|.|++|... +.. ...-..+..
T Consensus 323 ~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~ 402 (483)
T KOG4341|consen 323 QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG 402 (483)
T ss_pred EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc
Confidence 8888888763 22212222 34567888888777543332 222 236788888888887543 220 111235678
Q ss_pred CCEEeccCCcCC-CCCchhccCCCCCcEEEecCccCC
Q 008072 219 LQLLDLSFNKLT-GQIPTSLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 219 L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~ 254 (579)
|+.|.|+++... ...-..+..++.|+.+++-+++--
T Consensus 403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 888999988764 233445677888999888887643
No 76
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.09 E-value=0.0091 Score=39.03 Aligned_cols=30 Identities=17% Similarity=0.658 Sum_probs=12.8
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
...+.+|+++.+++.++++++++++|+||+
T Consensus 10 ~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred eEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 344444555554443223333333344444
No 77
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=95.25 E-value=0.02 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=15.8
Q ss_pred ccceEEEEehhHHHHHHHHHHHH
Q 008072 532 HVGKIVGITVGCAAALVIISSVF 554 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~ 554 (579)
+.+.|+|++||+++++.+++.++
T Consensus 64 s~gaiagi~vg~~~~v~~lv~~l 86 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVGFL 86 (96)
T ss_pred ccccEEEEEeehhhHHHHHHHHH
Confidence 56789999999876654444333
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.96 E-value=0.00048 Score=73.09 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=42.2
Q ss_pred CcEEEeecccCCCCCch----hhCCCCCCcEEEeccCCCCCCcchh----hhCC-CCCcEEEccCCcCCCC----Cchhh
Q 008072 75 LISLSFSSNNFFGPLPK----ELGKLTSLQQLYIDSSGVTGSIPQE----FANL-KSLRILWASDNLFTGK----IPEFF 141 (579)
Q Consensus 75 L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~----~p~~~ 141 (579)
+..|.|.+|.+...... .+...+.|+.|++++|.+...--.. +... ..|+.|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666665543222 2444566666666666665322111 1111 3455566666655532 23334
Q ss_pred cCccccceeeecCCcC
Q 008072 142 GTLTELADLRLQGTLL 157 (579)
Q Consensus 142 ~~l~~L~~L~l~~n~l 157 (579)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455666666666655
No 79
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=94.56 E-value=0.0095 Score=50.13 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=19.2
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKDSS 563 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 563 (579)
+.++|+||++|+++++++++++++|++|||++
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888765555444444444433
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.39 E-value=0.014 Score=33.12 Aligned_cols=12 Identities=50% Similarity=0.800 Sum_probs=4.9
Q ss_pred CcEEEeeccCCC
Q 008072 51 MQYLSLGINNFT 62 (579)
Q Consensus 51 L~~L~Ls~n~l~ 62 (579)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.19 E-value=0.027 Score=31.96 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=8.4
Q ss_pred CcEEEccCCcCCCCCchhh
Q 008072 27 LMDLNLGQNVLNGSIPAEI 45 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l 45 (579)
|++|||++|.++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444433
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.10 E-value=0.0005 Score=72.92 Aligned_cols=181 Identities=24% Similarity=0.230 Sum_probs=83.4
Q ss_pred CcEEEccCCcCCCCCch----hhcCCCCCcEEEeeccCCCCCC----ccccCCC-cCCcEEEeecccCCCC----Cchhh
Q 008072 27 LMDLNLGQNVLNGSIPA----EIGQLSNMQYLSLGINNFTGRV----PTELGNL-TKLISLSFSSNNFFGP----LPKEL 93 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l-~~L~~L~Ls~n~l~~~----~p~~l 93 (579)
+..|.|.+|.+...... .+...+.|+.|++++|.+...- -..+... ..|++|++..|.+... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 45555555555433222 2334455555555555554211 1111121 3344455555544322 23334
Q ss_pred CCCCCCcEEEeccCCCCC----Ccchhhh----CCCCCcEEEccCCcCCCCC----chhhcCccc-cceeeecCCcCCCC
Q 008072 94 GKLTSLQQLYIDSSGVTG----SIPQEFA----NLKSLRILWASDNLFTGKI----PEFFGTLTE-LADLRLQGTLLEGP 160 (579)
Q Consensus 94 ~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~~----p~~~~~l~~-L~~L~l~~n~l~~~ 160 (579)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +..|++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 444555555555555431 1122222 3455666666666554211 112233333 45566666655432
Q ss_pred ----chhhhhcC-CCCCeeEcCCCCCCCCChh----hhcCCCCCCEEEcccCcCCC
Q 008072 161 ----IPRSFRAL-NKLEDLRIGDLSAEDSTLD----FLESQKSLSILSLRNCRVSG 207 (579)
Q Consensus 161 ----~p~~~~~l-~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~Ls~n~l~~ 207 (579)
....+..+ ..++.+++..|.+...... .+..++.++.|.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12233333 4556666666666555332 23345566667777766654
No 83
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=93.57 E-value=0.022 Score=41.35 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=0.5
Q ss_pred eEEEEehhHHHHHHHHHHH-HHhhhcccccc
Q 008072 535 KIVGITVGCAAALVIISSV-FYLWWTKDSSS 564 (579)
Q Consensus 535 ~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~ 564 (579)
+++|+++|+++++++++++ .|+++|.|+++
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp ---------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555544433222222 33344545444
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.90 E-value=0.0017 Score=60.26 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=36.3
Q ss_pred CCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEc
Q 008072 49 SNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWA 128 (579)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 128 (579)
...+.||++.|++- .+-..|.-++.|..|+++.|++. ..|..++.+..++++++..|+++ ..|.++...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 33444444444433 22223333444444444444432 33444444444444444444444 34555555555555555
Q ss_pred cCCcC
Q 008072 129 SDNLF 133 (579)
Q Consensus 129 ~~n~l 133 (579)
-.|.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55443
No 85
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=91.02 E-value=0.38 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=12.0
Q ss_pred CCcccceEEEEehhHHHHHHHHHHH
Q 008072 529 DKKHVGKIVGITVGCAAALVIISSV 553 (579)
Q Consensus 529 ~~~~~~~~~g~~~g~~~~~~~~~~~ 553 (579)
++.++|.+++.++|+++++++++++
T Consensus 208 ~~~~~W~iv~g~~~G~~~L~ll~~l 232 (278)
T PF06697_consen 208 KRSWWWKIVVGVVGGVVLLGLLSLL 232 (278)
T ss_pred CcceeEEEEEEehHHHHHHHHHHHH
Confidence 3344555554444444444555433
No 86
>PHA03265 envelope glycoprotein D; Provisional
Probab=90.63 E-value=0.14 Score=50.23 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=17.7
Q ss_pred cceEEEEehhHHHHHHHHHHHHHhhhccccccceeec
Q 008072 533 VGKIVGITVGCAAALVIISSVFYLWWTKDSSSHIRIF 569 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (579)
++++||.. +++++++.++++++||||+...+++.
T Consensus 350 ~g~~ig~~---i~glv~vg~il~~~~rr~k~~~k~~~ 383 (402)
T PHA03265 350 VGISVGLG---IAGLVLVGVILYVCLRRKKELKKSAQ 383 (402)
T ss_pred cceEEccc---hhhhhhhhHHHHHHhhhhhhhhhhhh
Confidence 44444433 33344555555566777765555543
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.87 E-value=0.23 Score=26.14 Aligned_cols=8 Identities=50% Similarity=0.617 Sum_probs=2.5
Q ss_pred EEEcccCC
Q 008072 268 ALDVSYNP 275 (579)
Q Consensus 268 ~Ldls~N~ 275 (579)
.|+|++|+
T Consensus 5 ~L~l~~n~ 12 (17)
T PF13504_consen 5 TLDLSNNR 12 (17)
T ss_dssp EEEETSS-
T ss_pred EEECCCCC
Confidence 33333333
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.85 E-value=0.0071 Score=56.27 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=44.4
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCc
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 100 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 100 (579)
+...++.+.||++.|++. .+-..+..++.|..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 444555555555555544 22233444455555555555554 45555555555555555555443 4455555555555
Q ss_pred EEEeccCCC
Q 008072 101 QLYIDSSGV 109 (579)
Q Consensus 101 ~L~L~~n~l 109 (579)
.+++..+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555543
No 89
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=88.04 E-value=0.42 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=16.5
Q ss_pred EeeeeeeecCCcCcccccceEEEEEEcCeEe
Q 008072 427 LHFAEITMEDSLSWKGLGRRVFDVYIQGERV 457 (579)
Q Consensus 427 l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~ 457 (579)
|.|.+.. ....|.-+|-|++||+..
T Consensus 271 l~f~~a~------~~~sGLYv~V~~~nghv~ 295 (439)
T PF02480_consen 271 LQFTNAP------ESASGLYVFVVYYNGHVE 295 (439)
T ss_dssp EEESS--------GGG-EEEEEEEEETTEEE
T ss_pred eEecCCC------cccCceEEEEEEECCeee
Confidence 5566654 355678899999999764
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.81 E-value=0.11 Score=47.63 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=35.3
Q ss_pred cceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC-Chhhhc-CCCCCCEEEcccC-cCCCCcchhhcCCCCCCEEe
Q 008072 147 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS-TLDFLE-SQKSLSILSLRNC-RVSGKIPDQLGTFAKLQLLD 223 (579)
Q Consensus 147 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~-~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 223 (579)
++.++-+++.+..+--+.+.+++.|+.|.+.+|..-+. ..+.+. -.++|+.|+|++| +|+..-..++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555555555544444555555555555555532221 111111 2345555555544 24433333444444444444
Q ss_pred c
Q 008072 224 L 224 (579)
Q Consensus 224 L 224 (579)
|
T Consensus 183 l 183 (221)
T KOG3864|consen 183 L 183 (221)
T ss_pred h
Confidence 4
No 91
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=87.31 E-value=0.73 Score=42.42 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=13.7
Q ss_pred cccceEEEEehhHHHHHHHHH
Q 008072 531 KHVGKIVGITVGCAAALVIIS 551 (579)
Q Consensus 531 ~~~~~~~g~~~g~~~~~~~~~ 551 (579)
....+++|+++|+++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIF 55 (221)
T ss_pred cceeeeeeeecchhhhHHHHH
Confidence 356788898888766533333
No 92
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=86.43 E-value=0.43 Score=30.76 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=9.8
Q ss_pred EEEEehhHHHHHHHHHHH
Q 008072 536 IVGITVGCAAALVIISSV 553 (579)
Q Consensus 536 ~~g~~~g~~~~~~~~~~~ 553 (579)
.+|+++|+++++++++++
T Consensus 5 ~IaIIv~V~vg~~iiii~ 22 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIIC 22 (38)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 345666666654444444
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=0.17 Score=46.51 Aligned_cols=81 Identities=32% Similarity=0.347 Sum_probs=49.9
Q ss_pred CCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCC-cchhhc-CCCCCCEEeccCC-cCCCCCchhccCCCCCcEE
Q 008072 170 KLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGK-IPDQLG-TFAKLQLLDLSFN-KLTGQIPTSLQDLSTLQYL 246 (579)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 246 (579)
.++.++-+++.+.......+..++.|+.|.+.+|.--+. --+.++ -.++|+.|+|++| +||+.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666666666677777778888888877753321 011111 2467788888766 4665555556666777776
Q ss_pred EecC
Q 008072 247 YLGN 250 (579)
Q Consensus 247 ~L~~ 250 (579)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 94
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=82.13 E-value=1.6 Score=46.89 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=17.9
Q ss_pred CcccceEEEEehhHHHHHHHHHHHHHhhhccc
Q 008072 530 KKHVGKIVGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 530 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
++..|+|+|+++..+++++|++++++.+||+.
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKN 297 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhccc
Confidence 45788999987665554333444433334443
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.08 E-value=0.94 Score=26.63 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=6.0
Q ss_pred CCcEEEeeccCCC
Q 008072 50 NMQYLSLGINNFT 62 (579)
Q Consensus 50 ~L~~L~Ls~n~l~ 62 (579)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.08 E-value=0.94 Score=26.63 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=6.0
Q ss_pred CCcEEEeeccCCC
Q 008072 50 NMQYLSLGINNFT 62 (579)
Q Consensus 50 ~L~~L~Ls~n~l~ 62 (579)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 97
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=80.76 E-value=0.5 Score=34.47 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=0.9
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
-.++|+|+++|.+.++++++++++-+.+|.
T Consensus 11 laavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp --------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999998888888888888888876
No 98
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.66 E-value=1.6 Score=25.64 Aligned_cols=13 Identities=54% Similarity=0.670 Sum_probs=6.0
Q ss_pred CCCEEeccCCcCC
Q 008072 218 KLQLLDLSFNKLT 230 (579)
Q Consensus 218 ~L~~L~Ls~n~l~ 230 (579)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 99
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.66 E-value=1.6 Score=25.64 Aligned_cols=13 Identities=54% Similarity=0.670 Sum_probs=6.0
Q ss_pred CCCEEeccCCcCC
Q 008072 218 KLQLLDLSFNKLT 230 (579)
Q Consensus 218 ~L~~L~Ls~n~l~ 230 (579)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 100
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=79.87 E-value=1.9 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=17.0
Q ss_pred cccceEEEEehhHHHHHHHHHHHH
Q 008072 531 KHVGKIVGITVGCAAALVIISSVF 554 (579)
Q Consensus 531 ~~~~~~~g~~~g~~~~~~~~~~~~ 554 (579)
-+.++|+||+|+++++|..|+.++
T Consensus 364 LstgaIaGIsvavvvvVgglvGfL 387 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFL 387 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHH
Confidence 367899999999877655444443
No 101
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.24 E-value=0.37 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.2
Q ss_pred CCCcEEEccCCcCC
Q 008072 25 RKLMDLNLGQNVLN 38 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~ 38 (579)
++|++|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555544
No 102
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.03 E-value=5.6 Score=39.26 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=10.3
Q ss_pred CCcccceEEEEehhHHHH
Q 008072 529 DKKHVGKIVGITVGCAAA 546 (579)
Q Consensus 529 ~~~~~~~~~g~~~g~~~~ 546 (579)
++-.++.+|+|..+++++
T Consensus 222 ~~l~~G~VVlIslAiALG 239 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALG 239 (281)
T ss_pred ccccceEEEEEehHHHHH
Confidence 334567777666554444
No 103
>PF15102 TMEM154: TMEM154 protein family
Probab=72.32 E-value=4.7 Score=34.99 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.0
Q ss_pred EEEEehhHHHH
Q 008072 536 IVGITVGCAAA 546 (579)
Q Consensus 536 ~~g~~~g~~~~ 546 (579)
++-++|..+++
T Consensus 58 iLmIlIP~VLL 68 (146)
T PF15102_consen 58 ILMILIPLVLL 68 (146)
T ss_pred EEEEeHHHHHH
Confidence 44444554444
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.31 E-value=2.6 Score=24.92 Aligned_cols=17 Identities=53% Similarity=0.831 Sum_probs=11.0
Q ss_pred CCCcEEEcccCCCCCCCC
Q 008072 264 PNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 264 ~~L~~Ldls~N~l~~~~p 281 (579)
++|+.|++++|+|+ .+|
T Consensus 2 ~~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLT-SLP 18 (26)
T ss_pred cccceeecCCCccc-cCc
Confidence 45667777777776 444
No 105
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=71.89 E-value=2 Score=35.15 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=19.2
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
....+++.|+|++.++++.++..+..+||+
T Consensus 81 p~d~aLp~VIGGLcaL~LaamGA~~LLrR~ 110 (126)
T PF03229_consen 81 PVDFALPLVIGGLCALTLAAMGAGALLRRC 110 (126)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344677888888877666666655444443
No 106
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=71.76 E-value=1.4 Score=36.95 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred EEEEehhHHHHHHHHHHHHHhhhccccccc
Q 008072 536 IVGITVGCAAALVIISSVFYLWWTKDSSSH 565 (579)
Q Consensus 536 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 565 (579)
+++..++++++++.++..+++|+|.||+++
T Consensus 80 pi~~sal~v~lVl~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 80 PILGSALSVVLVLALLSGFLVWRRCRRREK 109 (129)
T ss_dssp ------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 333344444443333333334444444433
No 107
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=71.52 E-value=1.3 Score=39.00 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhcc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTK 560 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 560 (579)
..+.++||+||+++++.++..+++++.||
T Consensus 127 ~T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 127 STVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp -----------------------------
T ss_pred ceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 34578888888877755555555444444
No 108
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=71.36 E-value=3.3 Score=37.94 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=6.5
Q ss_pred ceEEEEehhHHHH
Q 008072 534 GKIVGITVGCAAA 546 (579)
Q Consensus 534 ~~~~g~~~g~~~~ 546 (579)
++++|+++|++++
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3555555554433
No 109
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=71.32 E-value=1.6 Score=43.82 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=15.7
Q ss_pred eEEEEehhHHHHHHHHHHH-HHhhhccccc
Q 008072 535 KIVGITVGCAAALVIISSV-FYLWWTKDSS 563 (579)
Q Consensus 535 ~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~ 563 (579)
.+|-|+||++.+.++++++ ++++.|||++
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 5667778866544444444 4444454443
No 110
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=69.49 E-value=1.6 Score=33.30 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=16.0
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWT 559 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 559 (579)
+.++.+|+++|=+++.++++.++|++-|
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567778777766654444444544433
No 111
>PF15069 FAM163: FAM163 family
Probab=66.77 E-value=7.7 Score=33.47 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=12.7
Q ss_pred ceEEEEehhHHHHHHHHHHHHH
Q 008072 534 GKIVGITVGCAAALVIISSVFY 555 (579)
Q Consensus 534 ~~~~g~~~g~~~~~~~~~~~~~ 555 (579)
.+|.|.+.+.+++++|++++++
T Consensus 6 vVItGgILAtVILLcIIaVLCY 27 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVLCY 27 (143)
T ss_pred EEEechHHHHHHHHHHHHHHHH
Confidence 4566666665666555555543
No 112
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=63.93 E-value=4.4 Score=26.73 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=23.0
Q ss_pred cccceEEEEehhHHHHHHHHHHH-HHhhhcccccc
Q 008072 531 KHVGKIVGITVGCAAALVIISSV-FYLWWTKDSSS 564 (579)
Q Consensus 531 ~~~~~~~g~~~g~~~~~~~~~~~-~~~~~~~~~~~ 564 (579)
++..-.+.+++|+++.+++++++ .++++..+|++
T Consensus 5 ~~~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 5 SSNSNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred cCCCceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 34567788888888765554444 56777778775
No 113
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.38 E-value=4.2 Score=43.21 Aligned_cols=36 Identities=33% Similarity=0.292 Sum_probs=16.3
Q ss_pred CCCCCEEEcccCcCCCC--cchhhcCCCCCCEEeccCC
Q 008072 192 QKSLSILSLRNCRVSGK--IPDQLGTFAKLQLLDLSFN 227 (579)
Q Consensus 192 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n 227 (579)
.+.+..++|++|++-.. +...-...|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555555554321 1111122355555555555
No 114
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=63.36 E-value=6.5 Score=36.04 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred cceEEEEehhHHHHHHHHHHH
Q 008072 533 VGKIVGITVGCAAALVIISSV 553 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~ 553 (579)
+.+++++++|+++++++++++
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~ 94 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVL 94 (179)
T ss_pred ccceeeeeeehhhHHHHHHHh
Confidence 457889999988876555443
No 115
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=60.94 E-value=3.3 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.365 Sum_probs=15.6
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhcc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTK 560 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~ 560 (579)
-.++|+|+++|.++. ++..++..++.||
T Consensus 5 ~IaIIv~V~vg~~ii-ii~~~~YaCcykk 32 (38)
T PF02439_consen 5 TIAIIVAVVVGMAII-IICMFYYACCYKK 32 (38)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHcc
Confidence 356677777776555 5555553333333
No 116
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.27 E-value=6.1 Score=23.42 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=7.7
Q ss_pred CCCcEEEeeccCCC
Q 008072 49 SNMQYLSLGINNFT 62 (579)
Q Consensus 49 ~~L~~L~Ls~n~l~ 62 (579)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 117
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.49 E-value=7.1 Score=23.45 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=10.6
Q ss_pred CCCcEEEcccCCCC
Q 008072 264 PNLIALDVSYNPLS 277 (579)
Q Consensus 264 ~~L~~Ldls~N~l~ 277 (579)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888875
No 118
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=56.44 E-value=17 Score=33.70 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=15.0
Q ss_pred cceEEEEehhH-HHHHHHHHHHHHhhhccc
Q 008072 533 VGKIVGITVGC-AAALVIISSVFYLWWTKD 561 (579)
Q Consensus 533 ~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~ 561 (579)
.+++|++|+-+ +.+++++++.+|++|+||
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 34677766543 444444444445555555
No 119
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.17 E-value=45 Score=35.06 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=18.5
Q ss_pred CCEEeccCCcCCCCCch---hccCCCCCcEEEecCccCC
Q 008072 219 LQLLDLSFNKLTGQIPT---SLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 219 L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~N~l~ 254 (579)
+..+.++.|.+....-. .+..-..+..|++++|.-.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 45556666665432211 2233456667777776543
No 120
>PTZ00370 STEVOR; Provisional
Probab=52.49 E-value=6.4 Score=38.21 Aligned_cols=7 Identities=14% Similarity=0.791 Sum_probs=2.9
Q ss_pred hhhcccc
Q 008072 556 LWWTKDS 562 (579)
Q Consensus 556 ~~~~~~~ 562 (579)
+|+.|||
T Consensus 276 iwlyrrR 282 (296)
T PTZ00370 276 IWLYRRR 282 (296)
T ss_pred HHHHHhh
Confidence 3544443
No 121
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=52.26 E-value=6.9 Score=37.91 Aligned_cols=7 Identities=14% Similarity=0.791 Sum_probs=3.0
Q ss_pred hhhcccc
Q 008072 556 LWWTKDS 562 (579)
Q Consensus 556 ~~~~~~~ 562 (579)
+|+.|||
T Consensus 280 iWlyrrR 286 (295)
T TIGR01478 280 IWLYRRR 286 (295)
T ss_pred HHHHHhh
Confidence 3544443
No 122
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=49.97 E-value=8.2 Score=33.79 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=16.6
Q ss_pred CCcccceEEEEehhHHHHHHHHHHHHH
Q 008072 529 DKKHVGKIVGITVGCAAALVIISSVFY 555 (579)
Q Consensus 529 ~~~~~~~~~g~~~g~~~~~~~~~~~~~ 555 (579)
++--+|++||+.+..+++ +++++++|
T Consensus 48 knIVIGvVVGVGg~ill~-il~lvf~~ 73 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLG-ILALVFIF 73 (154)
T ss_pred ccEEEEEEecccHHHHHH-HHHhheeE
Confidence 334688999977665544 55555654
No 123
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=49.96 E-value=5.4 Score=39.31 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=0.0
Q ss_pred eEEEEehhH
Q 008072 535 KIVGITVGC 543 (579)
Q Consensus 535 ~~~g~~~g~ 543 (579)
+|.++||++
T Consensus 149 ~IpaVVI~~ 157 (290)
T PF05454_consen 149 FIPAVVIAA 157 (290)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344444443
No 124
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.14 E-value=11 Score=29.36 Aligned_cols=6 Identities=0% Similarity=-0.225 Sum_probs=2.4
Q ss_pred hhHHHH
Q 008072 541 VGCAAA 546 (579)
Q Consensus 541 ~g~~~~ 546 (579)
.+++++
T Consensus 37 ~lvI~~ 42 (94)
T PF05393_consen 37 FLVICG 42 (94)
T ss_pred HHHHHH
Confidence 343443
No 125
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=47.93 E-value=22 Score=30.66 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=11.5
Q ss_pred ceEEEEehhHHHHHHHH
Q 008072 534 GKIVGITVGCAAALVII 550 (579)
Q Consensus 534 ~~~~g~~~g~~~~~~~~ 550 (579)
.+|+|||.|++.++.++
T Consensus 61 tAIaGIVfgiVfimgvv 77 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVV 77 (155)
T ss_pred ceeeeeehhhHHHHHHH
Confidence 47889888876654443
No 126
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=47.53 E-value=32 Score=36.15 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=8.7
Q ss_pred CCcEEEeeccCCCCCCc
Q 008072 50 NMQYLSLGINNFTGRVP 66 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p 66 (579)
.+++++++.|.+....|
T Consensus 166 r~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVP 182 (553)
T ss_pred hhhhhccCCCcccccCC
Confidence 35555555555544433
No 127
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.33 E-value=4.3 Score=40.28 Aligned_cols=9 Identities=11% Similarity=0.243 Sum_probs=3.4
Q ss_pred EEEEehhHH
Q 008072 536 IVGITVGCA 544 (579)
Q Consensus 536 ~~g~~~g~~ 544 (579)
|++.+++.+
T Consensus 258 I~aSiiaIl 266 (299)
T PF02009_consen 258 IIASIIAIL 266 (299)
T ss_pred HHHHHHHHH
Confidence 333344333
No 128
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=45.75 E-value=38 Score=31.29 Aligned_cols=14 Identities=7% Similarity=0.506 Sum_probs=5.8
Q ss_pred HHHHHHHhhhcccc
Q 008072 549 IISSVFYLWWTKDS 562 (579)
Q Consensus 549 ~~~~~~~~~~~~~~ 562 (579)
+++++++++++||+
T Consensus 172 ~~~~~~~~~~~R~~ 185 (189)
T PF14610_consen 172 ALIMYGFFFWNRKK 185 (189)
T ss_pred HHHHHhhheeeccc
Confidence 33333444444443
No 129
>PF12669 P12: Virus attachment protein p12 family
Probab=45.33 E-value=22 Score=25.80 Aligned_cols=8 Identities=0% Similarity=0.148 Sum_probs=3.4
Q ss_pred hhcccccc
Q 008072 557 WWTKDSSS 564 (579)
Q Consensus 557 ~~~~~~~~ 564 (579)
++|+++++
T Consensus 20 ~~k~~K~G 27 (58)
T PF12669_consen 20 FIKDKKKG 27 (58)
T ss_pred HHHHhhcC
Confidence 34444443
No 130
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.55 E-value=12 Score=40.05 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=38.7
Q ss_pred cCCCCCeeEcCCCCCCCCC-hh-hhcCCCCCCEEEcccC--cCCCCcchhhc--CCCCCCEEeccCCcCCC
Q 008072 167 ALNKLEDLRIGDLSAEDST-LD-FLESQKSLSILSLRNC--RVSGKIPDQLG--TFAKLQLLDLSFNKLTG 231 (579)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~~-~~-~l~~~~~L~~L~Ls~n--~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~ 231 (579)
+.+.+..+++++|++.... .. .-...|+|+.|+|++| .+.. ..++. ....|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 4566777788888765542 22 2345789999999999 3331 11222 22456777777777654
No 131
>PF15345 TMEM51: Transmembrane protein 51
Probab=42.86 E-value=31 Score=32.52 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=12.0
Q ss_pred cceEEEEehhHHHHHHHHHHHH
Q 008072 533 VGKIVGITVGCAAALVIISSVF 554 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~~ 554 (579)
...++-+.||+.++++++.+|.
T Consensus 57 t~SVAyVLVG~Gv~LLLLSICL 78 (233)
T PF15345_consen 57 TFSVAYVLVGSGVALLLLSICL 78 (233)
T ss_pred eEEEEEehhhHHHHHHHHHHHH
Confidence 3344555677766645555553
No 132
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=38.91 E-value=15 Score=29.51 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=10.8
Q ss_pred cccceEEEEehhHHHH
Q 008072 531 KHVGKIVGITVGCAAA 546 (579)
Q Consensus 531 ~~~~~~~g~~~g~~~~ 546 (579)
+++...||+|+++++.
T Consensus 15 ~sW~~LVGVv~~al~~ 30 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVT 30 (102)
T ss_pred cccHhHHHHHHHHHHH
Confidence 4666777777776654
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.08 E-value=7.6 Score=32.89 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=18.2
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhcccccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKDSSS 564 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 564 (579)
-.++|+|+++|+++ +++++..++.-+|||...
T Consensus 66 i~~Ii~gv~aGvIg-~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG-IILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHS-----
T ss_pred eeehhHHHHHHHHH-HHHHHHHHHHHHhccCCC
Confidence 46677777777654 466766766777777543
No 134
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.75 E-value=46 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=12.6
Q ss_pred cceEEEEehhHHHHHHHHH
Q 008072 533 VGKIVGITVGCAAALVIIS 551 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~ 551 (579)
-+.|+-++||.+++++++.
T Consensus 12 PGlIVLlvV~g~ll~flvG 30 (69)
T PF04689_consen 12 PGLIVLLVVAGLLLVFLVG 30 (69)
T ss_pred CCeEEeehHHHHHHHHHHH
Confidence 4578888887776654543
No 135
>PF15102 TMEM154: TMEM154 protein family
Probab=34.05 E-value=15 Score=32.06 Aligned_cols=14 Identities=0% Similarity=-0.066 Sum_probs=9.1
Q ss_pred cceEEEEehhHHHH
Q 008072 533 VGKIVGITVGCAAA 546 (579)
Q Consensus 533 ~~~~~g~~~g~~~~ 546 (579)
..++|..+++++++
T Consensus 59 LmIlIP~VLLvlLL 72 (146)
T PF15102_consen 59 LMILIPLVLLVLLL 72 (146)
T ss_pred EEEeHHHHHHHHHH
Confidence 45666767776665
No 136
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=33.56 E-value=41 Score=33.25 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=11.6
Q ss_pred EEehhHHHHHHHHHHHHHhhhccc
Q 008072 538 GITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 538 g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
-|+++++++++.++++.++|+|-+
T Consensus 202 ~Iv~~cvaG~aAliva~~cW~Rlq 225 (341)
T PF06809_consen 202 LIVVCCVAGAAALIVAGYCWYRLQ 225 (341)
T ss_pred hhHHHHHHHHHHHHHhhheEEEec
Confidence 334444444444455555565543
No 137
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=31.01 E-value=47 Score=22.74 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHhhhcc
Q 008072 541 VGCAAALVIISSVFYLWWTK 560 (579)
Q Consensus 541 ~g~~~~~~~~~~~~~~~~~~ 560 (579)
+|+.++.+++.+.+|-|.||
T Consensus 25 ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444434444445545554
No 138
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.88 E-value=16 Score=27.10 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=6.0
Q ss_pred ceEEEEehhHHH
Q 008072 534 GKIVGITVGCAA 545 (579)
Q Consensus 534 ~~~~g~~~g~~~ 545 (579)
+..||++.|.++
T Consensus 33 W~aIGvi~gi~~ 44 (68)
T PF04971_consen 33 WAAIGVIGGIFF 44 (68)
T ss_pred chhHHHHHHHHH
Confidence 445565554433
No 139
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.67 E-value=32 Score=20.00 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=6.8
Q ss_pred CCCcEEEccCCc
Q 008072 25 RKLMDLNLGQNV 36 (579)
Q Consensus 25 ~~L~~L~Ls~n~ 36 (579)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666653
No 140
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=29.96 E-value=58 Score=19.30 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhccc
Q 008072 548 VIISSVFYLWWTKD 561 (579)
Q Consensus 548 ~~~~~~~~~~~~~~ 561 (579)
..+.+..++.+|||
T Consensus 11 l~~~l~~l~~~rRr 24 (26)
T TIGR03778 11 LGLGLLGLLGLRRR 24 (26)
T ss_pred HHHHHHHHHHHhhc
Confidence 33444444445554
No 141
>PHA03286 envelope glycoprotein E; Provisional
Probab=28.71 E-value=38 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=12.7
Q ss_pred ccccceEEEEEEcCeEe
Q 008072 441 KGLGRRVFDVYIQGERV 457 (579)
Q Consensus 441 ~~~~~r~F~V~i~~~~~ 457 (579)
+..|.-+|-+++||+.-
T Consensus 317 s~SGLYVfVl~yNGH~e 333 (492)
T PHA03286 317 TDAGLYVVVALYNGRPL 333 (492)
T ss_pred ccCceEEEEEEECCcce
Confidence 45577888888888653
No 142
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=28.15 E-value=61 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHhhhcccc
Q 008072 542 GCAAALVIISSVFYLWWTKDS 562 (579)
Q Consensus 542 g~~~~~~~~~~~~~~~~~~~~ 562 (579)
|++++++.++++.+++.||+.
T Consensus 155 G~~VlA~~VA~L~~~F~RR~~ 175 (215)
T PF05084_consen 155 GAVVLAVSVAMLTWFFLRRTG 175 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444443334444334445443
No 143
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=27.87 E-value=31 Score=31.16 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=13.4
Q ss_pred cceEEEEehhHHHHHHHHHHHHHhhhcccccccee
Q 008072 533 VGKIVGITVGCAAALVIISSVFYLWWTKDSSSHIR 567 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (579)
.++|+|||.+ ++++++-++..|+.++||| +|-
T Consensus 114 ~g~IaGIvsa-v~valvGAvsSyiaYqkKK--lCF 145 (169)
T PF12301_consen 114 AGTIAGIVSA-VVVALVGAVSSYIAYQKKK--LCF 145 (169)
T ss_pred cchhhhHHHH-HHHHHHHHHHHHHHHHhhc--cce
Confidence 4456665433 2222222333444444443 454
No 144
>PF15069 FAM163: FAM163 family
Probab=27.40 E-value=66 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=15.9
Q ss_pred EEEEehhHHHHHHHHHHHHHhhhcc
Q 008072 536 IVGITVGCAAALVIISSVFYLWWTK 560 (579)
Q Consensus 536 ~~g~~~g~~~~~~~~~~~~~~~~~~ 560 (579)
.|.|+.|++|.|++|.++++++..|
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCR 29 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCR 29 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHh
Confidence 3455556666655566667778877
No 145
>PHA03283 envelope glycoprotein E; Provisional
Probab=27.02 E-value=1.1e+02 Score=32.51 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=19.4
Q ss_pred EEEeeeeeeecCCcCcccccceEEEEEEcCeEe
Q 008072 425 IDLHFAEITMEDSLSWKGLGRRVFDVYIQGERV 457 (579)
Q Consensus 425 v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~ 457 (579)
|-|.|.+.. ....|.-+|-|++||+..
T Consensus 315 v~L~f~nap------~~~SGLYVfVv~yNgHve 341 (542)
T PHA03283 315 VDLLFKNAP------ASASGLYVFVLLYNGHPE 341 (542)
T ss_pred cceEeccCC------cccCceEEEEEEECCeee
Confidence 446666654 456688999999999764
No 146
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.22 E-value=35 Score=29.30 Aligned_cols=7 Identities=0% Similarity=0.012 Sum_probs=3.3
Q ss_pred ehhHHHH
Q 008072 540 TVGCAAA 546 (579)
Q Consensus 540 ~~g~~~~ 546 (579)
++|.+++
T Consensus 35 LiaIvVl 41 (189)
T PF05568_consen 35 LIAIVVL 41 (189)
T ss_pred HHHHHHH
Confidence 4454444
No 147
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.09 E-value=1.8e+02 Score=31.14 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=18.7
Q ss_pred EEeeeeeeecCCcCcccccceEEEEEEcCeEe
Q 008072 426 DLHFAEITMEDSLSWKGLGRRVFDVYIQGERV 457 (579)
Q Consensus 426 ~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~ 457 (579)
-|.|.+.. ....|.-+|-|++||...
T Consensus 476 dL~F~nAp------asaSGLYVfVl~yNGHVe 501 (642)
T PHA03281 476 ALKFVDAA------ESLSGLYVFIIHFNGHVE 501 (642)
T ss_pred ceEeccCC------cccCceEEEEEEECCeee
Confidence 35666654 455688899999999764
No 148
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.87 E-value=78 Score=37.51 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=5.5
Q ss_pred cceEEEEehhHH
Q 008072 533 VGKIVGITVGCA 544 (579)
Q Consensus 533 ~~~~~g~~~g~~ 544 (579)
+|+||++++|++
T Consensus 978 ~wiIi~svl~GL 989 (1030)
T KOG3637|consen 978 LWIIILSVLGGL 989 (1030)
T ss_pred eeeehHHHHHHH
Confidence 445554444443
No 149
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.64 E-value=46 Score=37.34 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=7.5
Q ss_pred ehhHHHHHHHHHHHHHhh
Q 008072 540 TVGCAAALVIISSVFYLW 557 (579)
Q Consensus 540 ~~g~~~~~~~~~~~~~~~ 557 (579)
+.|+.++++++++|+++|
T Consensus 278 ILG~~~livl~lL~vLl~ 295 (807)
T PF10577_consen 278 ILGGTALIVLILLCVLLC 295 (807)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444434444443333
No 150
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.26 E-value=1.3e+02 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.0
Q ss_pred CCCCcEEEcc
Q 008072 263 APNLIALDVS 272 (579)
Q Consensus 263 ~~~L~~Ldls 272 (579)
.++|++|.++
T Consensus 33 P~sl~~L~fg 42 (44)
T PF05725_consen 33 PNSLKSLSFG 42 (44)
T ss_pred CCCceEEEee
Confidence 3455555543
No 151
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=22.74 E-value=56 Score=27.05 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=3.9
Q ss_pred HHhhhccccc
Q 008072 554 FYLWWTKDSS 563 (579)
Q Consensus 554 ~~~~~~~~~~ 563 (579)
++.|+++||+
T Consensus 19 l~~wr~~~rq 28 (107)
T PF15330_consen 19 LLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHhhh
Confidence 3334443333
No 152
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=21.84 E-value=1.4e+02 Score=32.71 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=12.5
Q ss_pred ccCC-CCCceEEEEEeeeeee
Q 008072 414 YGLG-LENGKYRIDLHFAEIT 433 (579)
Q Consensus 414 ~~~~-~~~g~y~v~l~F~e~~ 433 (579)
|.-. ..+|.-.+.+-|.|+.
T Consensus 252 Wrn~s~~~g~vei~FEF~~~r 272 (807)
T KOG1094|consen 252 WRNDSFTNGYVEIEFEFDELR 272 (807)
T ss_pred eccccccCCceEEEEEhhhhc
Confidence 4443 2567777777777753
No 153
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=21.78 E-value=23 Score=29.08 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=6.5
Q ss_pred eEEEEehhHHHH
Q 008072 535 KIVGITVGCAAA 546 (579)
Q Consensus 535 ~~~g~~~g~~~~ 546 (579)
++.|+|+|++++
T Consensus 90 l~LGvV~GG~i~ 101 (127)
T PF06040_consen 90 LILGVVAGGLIA 101 (127)
T ss_pred hhHHHHhccHHH
Confidence 344666665544
No 154
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.62 E-value=45 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=12.2
Q ss_pred ccceEEEEehhHHHHHHHH
Q 008072 532 HVGKIVGITVGCAAALVII 550 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~ 550 (579)
..++.+++++|.+++++++
T Consensus 32 ~Lgm~~lvI~~iFil~Vil 50 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVIL 50 (94)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 3456677888887764443
No 155
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=21.32 E-value=77 Score=24.30 Aligned_cols=7 Identities=0% Similarity=0.050 Sum_probs=3.0
Q ss_pred hhHHHHH
Q 008072 541 VGCAAAL 547 (579)
Q Consensus 541 ~g~~~~~ 547 (579)
+++++++
T Consensus 4 ~~~~~g~ 10 (75)
T PF14575_consen 4 ASIIVGV 10 (75)
T ss_dssp HHHHHHH
T ss_pred ehHHHHH
Confidence 3444443
No 156
>smart00469 WIF Wnt-inhibitory factor-1 like domain. Occurs as extracellular domain in metazoan Ryk receptor tyrosine kinases. C. elegans Ryk is required for cell-cuticle recognition. WIF-1 binds to Wnt and inhibits its activity.
Probab=21.25 E-value=20 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=29.9
Q ss_pred cCchhhhhCCCCceEEEEEEEEecCCeEEEEEEecCCCC
Q 008072 460 DLNIKKEAGGSKRALVKTFEANVTNTIIEIHFFWAGKGT 498 (579)
Q Consensus 460 ~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~~~~~~~g~ 498 (579)
+.+++....|.-.+|..||.+.|+.+.-.++|.|-+.|.
T Consensus 18 ~aelyyI~nG~vn~ya~~F~~~Vps~i~~v~FTW~s~~~ 56 (136)
T smart00469 18 SAELYYVREGKISPYALNFMVPVPANIHDLSFTWQALGQ 56 (136)
T ss_pred CcEEEEEecCcccHHHhccCCCcCCccceEEEEEEcCCC
Confidence 344555555666788899998898888899999988763
No 157
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.16 E-value=32 Score=36.41 Aligned_cols=23 Identities=17% Similarity=0.579 Sum_probs=0.0
Q ss_pred cceEEEEehhHHHHHHHHHHHHH
Q 008072 533 VGKIVGITVGCAAALVIISSVFY 555 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~~~ 555 (579)
..+++++++|+++++++++++++
T Consensus 351 ~~~~l~vVlgvavlivVv~viv~ 373 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVVVGVIVW 373 (439)
T ss_dssp -----------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHhh
Confidence 34555666665555444444433
No 158
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=20.97 E-value=1.4e+02 Score=30.96 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=14.7
Q ss_pred EEEEEEEEecCCeEEEEEEecCCCC
Q 008072 474 LVKTFEANVTNTIIEIHFFWAGKGT 498 (579)
Q Consensus 474 ~~~~~~v~~~~~~l~i~~~~~~~g~ 498 (579)
|-..|.+.|+.+.-.++|.|-+.|+
T Consensus 52 Yal~F~~~Vpani~~lsFTW~a~~~ 76 (563)
T KOG1024|consen 52 YALNFAVPVPANISDLSFTWQADHP 76 (563)
T ss_pred hhheeceeccccccceEEEEecCCc
Confidence 3445666666666666666665554
No 159
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.90 E-value=29 Score=35.42 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=4.5
Q ss_pred HHhhhccccc
Q 008072 554 FYLWWTKDSS 563 (579)
Q Consensus 554 ~~~~~~~~~~ 563 (579)
+|++.||||.
T Consensus 406 ~~~~v~rrr~ 415 (436)
T PTZ00208 406 FFIMVKRRRN 415 (436)
T ss_pred hheeeeeccC
Confidence 3334555543
No 160
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=20.57 E-value=72 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=12.0
Q ss_pred EEEehhHHHHHHHHHHHHHhhhccc
Q 008072 537 VGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 537 ~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
+|-.++++++++++++++++|++.+
T Consensus 27 lg~~~~~~~~~~~l~~~~~~~~~~~ 51 (55)
T PF03988_consen 27 LGYLISTLIFAALLAVVLALWYRSK 51 (55)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555444444444444433
Done!