Query 008072
Match_columns 579
No_of_seqs 518 out of 4885
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.5E-39 1.6E-43 364.1 23.5 303 3-310 345-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-37 6.1E-42 351.1 21.9 257 2-258 295-555 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 1.8E-35 6.3E-40 314.7 21.0 298 2-299 31-408 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 2E-34 6.8E-39 308.7 22.5 300 2-301 33-335 (477)
5 4eco_A Uncharacterized protein 100.0 1E-34 3.5E-39 321.4 17.8 291 2-299 82-501 (636)
6 4eco_A Uncharacterized protein 100.0 3.4E-34 1.2E-38 317.1 17.9 309 2-317 207-568 (636)
7 3v47_A TOLL-like receptor 5B a 100.0 1.4E-33 4.8E-38 300.1 18.1 280 2-281 55-412 (455)
8 3t6q_A CD180 antigen; protein- 100.0 4E-33 1.4E-37 307.5 22.0 297 2-300 255-561 (606)
9 2z7x_B TOLL-like receptor 1, v 100.0 9.2E-33 3.1E-37 299.0 24.3 290 2-299 22-434 (520)
10 4ecn_A Leucine-rich repeat pro 100.0 9.7E-33 3.3E-37 311.5 22.7 308 2-318 449-809 (876)
11 1ogq_A PGIP-2, polygalacturona 100.0 8.4E-34 2.9E-38 286.5 12.4 252 25-278 50-306 (313)
12 1ogq_A PGIP-2, polygalacturona 100.0 7.4E-34 2.5E-38 287.0 11.9 251 2-255 51-306 (313)
13 4ecn_A Leucine-rich repeat pro 100.0 3.3E-32 1.1E-36 307.2 24.1 296 2-311 492-825 (876)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-32 1.5E-36 296.5 24.2 126 2-133 53-181 (562)
15 2id5_A Lingo-1, leucine rich r 100.0 2.4E-32 8.1E-37 292.5 20.4 283 2-284 57-340 (477)
16 3vq2_A TLR4, TOLL-like recepto 100.0 3E-32 1E-36 300.6 20.9 155 144-299 349-510 (606)
17 3vq2_A TLR4, TOLL-like recepto 100.0 3E-32 1E-36 300.5 20.3 296 2-299 33-486 (606)
18 3t6q_A CD180 antigen; protein- 100.0 4.8E-32 1.6E-36 298.9 21.8 297 2-299 34-389 (606)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-31 5.4E-36 305.4 26.1 299 2-300 25-376 (844)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-31 5.5E-36 291.2 24.5 131 166-299 331-486 (549)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-31 6.2E-36 288.8 23.9 288 2-299 46-457 (520)
22 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-31 1.7E-35 287.3 23.7 276 2-278 27-424 (549)
23 2z63_A TOLL-like receptor 4, v 100.0 3.1E-31 1.1E-35 290.1 22.1 134 2-135 29-163 (570)
24 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-31 2.6E-35 293.3 24.9 298 2-299 26-366 (680)
25 3o6n_A APL1; leucine-rich repe 100.0 1E-30 3.6E-35 272.3 24.0 283 2-299 46-331 (390)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-30 3.6E-35 285.5 24.5 290 2-299 77-486 (562)
27 2z63_A TOLL-like receptor 4, v 100.0 4.6E-31 1.6E-35 288.8 20.1 296 2-299 53-507 (570)
28 1xku_A Decorin; proteoglycan, 100.0 4.4E-30 1.5E-34 261.4 25.1 249 26-284 32-283 (330)
29 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-30 5.4E-35 290.7 23.5 296 3-299 250-597 (680)
30 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-30 1.3E-34 293.9 27.1 295 2-299 49-394 (844)
31 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-30 7.8E-35 263.7 22.0 248 26-284 34-284 (332)
32 3oja_B Anopheles plasmodium-re 100.0 3.1E-30 1.1E-34 283.7 23.9 283 2-299 52-337 (597)
33 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-30 1.3E-34 284.7 23.5 135 2-136 53-188 (635)
34 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5.1E-34 257.5 24.1 286 2-297 32-330 (330)
35 4fmz_A Internalin; leucine ric 100.0 4.3E-29 1.5E-33 255.8 27.1 278 2-299 45-324 (347)
36 4fmz_A Internalin; leucine ric 100.0 1.2E-28 4E-33 252.6 29.6 276 2-298 67-345 (347)
37 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-29 5.7E-34 257.3 23.0 285 2-297 34-331 (332)
38 3oja_B Anopheles plasmodium-re 100.0 1.6E-29 5.6E-34 277.9 23.4 283 2-301 76-360 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 4.3E-29 1.5E-33 260.1 23.1 281 2-300 70-353 (390)
40 1o6v_A Internalin A; bacterial 100.0 1.6E-28 5.4E-33 262.0 28.1 277 2-299 69-366 (466)
41 1o6v_A Internalin A; bacterial 100.0 4.3E-28 1.5E-32 258.7 30.6 278 2-300 47-345 (466)
42 4fcg_A Uncharacterized protein 100.0 2.2E-28 7.4E-33 248.4 22.1 224 24-252 80-312 (328)
43 4fcg_A Uncharacterized protein 100.0 3.1E-28 1E-32 247.3 21.1 224 2-230 82-314 (328)
44 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-28 2E-32 256.2 23.0 272 2-299 43-331 (457)
45 2z80_A TOLL-like receptor 2, v 100.0 6.9E-29 2.4E-33 255.0 14.0 272 6-281 36-318 (353)
46 2z66_A Variable lymphocyte rec 100.0 4.7E-29 1.6E-33 250.9 11.1 247 29-279 11-263 (306)
47 3bz5_A Internalin-J, INLJ; leu 100.0 2.8E-27 9.7E-32 250.9 23.6 270 2-299 65-352 (457)
48 2z80_A TOLL-like receptor 2, v 100.0 2.6E-28 8.9E-33 250.7 14.6 256 2-258 53-318 (353)
49 1wwl_A Monocyte differentiatio 100.0 3.8E-29 1.3E-33 252.3 8.1 249 21-278 39-310 (312)
50 1ozn_A Reticulon 4 receptor; N 100.0 6.7E-28 2.3E-32 240.0 16.7 255 28-285 14-269 (285)
51 1ozn_A Reticulon 4 receptor; N 99.9 7.7E-28 2.6E-32 239.5 13.8 255 4-262 14-269 (285)
52 2z66_A Variable lymphocyte rec 99.9 1.4E-27 4.8E-32 240.1 15.6 230 25-255 28-262 (306)
53 4g8a_A TOLL-like receptor 4; l 99.9 6.9E-27 2.4E-31 258.6 22.2 300 2-301 77-582 (635)
54 3zyi_A Leucine-rich repeat-con 99.9 5.2E-27 1.8E-31 249.2 20.3 249 26-279 55-305 (452)
55 1wwl_A Monocyte differentiatio 99.9 1E-28 3.4E-33 249.3 6.7 243 3-255 45-310 (312)
56 3zyj_A Leucine-rich repeat-con 99.9 6.5E-27 2.2E-31 247.6 20.3 248 26-278 44-293 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 8.9E-27 3E-31 247.4 20.3 247 50-301 55-305 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 1.5E-26 5.2E-31 244.8 21.0 247 50-301 44-294 (440)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-28 7.2E-33 247.5 4.7 265 3-281 12-280 (317)
60 2jwp_A Malectin, MGC80075; sug 99.9 1.6E-27 5.5E-32 217.5 10.0 159 329-519 7-171 (174)
61 1jl5_A Outer protein YOPM; leu 99.9 3.7E-25 1.3E-29 234.5 25.2 239 25-299 111-350 (454)
62 1jl5_A Outer protein YOPM; leu 99.9 3.5E-26 1.2E-30 242.4 15.7 266 2-299 12-290 (454)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-24 9E-29 235.2 27.6 255 2-299 41-297 (622)
64 3oja_A Leucine-rich immune mol 99.9 2.4E-26 8.1E-31 246.0 10.2 237 4-254 3-250 (487)
65 1z7x_W Ribonuclease inhibitor; 99.9 5.2E-28 1.8E-32 257.5 -4.3 298 2-299 29-383 (461)
66 1z7x_W Ribonuclease inhibitor; 99.9 1E-27 3.6E-32 255.2 -2.1 298 2-299 4-354 (461)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-27 2E-31 236.9 3.2 245 2-260 35-282 (317)
68 2z62_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 211.7 17.6 204 51-255 30-238 (276)
69 3oja_A Leucine-rich immune mol 99.9 1E-25 3.5E-30 241.0 6.7 234 2-249 35-270 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-23 1.2E-27 226.2 24.4 243 2-285 62-305 (622)
71 2z62_A TOLL-like receptor 4, v 99.9 4.3E-24 1.5E-28 211.3 15.5 215 16-233 21-240 (276)
72 3rfs_A Internalin B, repeat mo 99.9 2.8E-24 9.7E-29 212.2 12.3 222 27-284 21-242 (272)
73 2o6q_A Variable lymphocyte rec 99.9 9.7E-23 3.3E-27 200.9 22.1 202 26-254 17-218 (270)
74 2o6q_A Variable lymphocyte rec 99.9 1E-22 3.4E-27 200.8 22.0 201 3-230 18-218 (270)
75 3rfs_A Internalin B, repeat mo 99.9 2E-23 6.8E-28 206.1 15.1 215 9-260 27-241 (272)
76 2ast_B S-phase kinase-associat 99.9 2.6E-24 9E-29 219.0 7.5 253 26-284 48-313 (336)
77 2ast_B S-phase kinase-associat 99.9 1.8E-24 6.1E-29 220.3 6.1 252 3-261 49-313 (336)
78 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 202.4 18.3 204 21-255 6-209 (290)
79 3goz_A Leucine-rich repeat-con 99.9 3E-24 1E-28 221.2 6.8 258 5-282 2-302 (362)
80 2ca6_A RAN GTPase-activating p 99.9 8.6E-25 2.9E-29 227.3 2.3 188 94-281 91-320 (386)
81 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.6E-27 201.3 18.5 203 45-278 6-209 (290)
82 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 5E-29 225.5 2.9 243 16-258 23-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 6.6E-24 2.3E-28 218.6 5.3 251 29-299 2-297 (362)
84 4glp_A Monocyte differentiatio 99.9 1.6E-22 5.3E-27 203.7 15.1 225 50-278 65-308 (310)
85 4glp_A Monocyte differentiatio 99.9 1E-22 3.6E-27 205.0 13.7 226 24-255 63-308 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 2E-22 6.8E-27 194.9 11.6 196 50-274 32-236 (239)
87 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.6E-26 194.5 18.0 193 47-255 39-231 (308)
88 1h6u_A Internalin H; cell adhe 99.9 3.1E-21 1.1E-25 193.9 18.4 211 51-278 21-231 (308)
89 2xwt_C Thyrotropin receptor; s 99.9 2.5E-21 8.4E-26 187.2 15.7 206 14-228 23-237 (239)
90 3m19_A Variable lymphocyte rec 99.9 4.2E-21 1.4E-25 187.0 16.7 180 50-256 15-194 (251)
91 3m19_A Variable lymphocyte rec 99.9 2E-20 6.9E-25 182.2 19.3 181 25-232 14-194 (251)
92 3ogk_B Coronatine-insensitive 99.8 2.2E-22 7.4E-27 221.0 4.1 295 3-298 140-500 (592)
93 3ogk_B Coronatine-insensitive 99.8 2.7E-22 9.2E-27 220.2 4.3 297 2-300 165-527 (592)
94 4ay9_X Follicle-stimulating ho 99.8 4.1E-20 1.4E-24 189.2 15.8 238 28-273 12-255 (350)
95 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.7E-24 186.1 17.5 240 4-251 12-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 170.9 15.4 128 28-158 10-137 (208)
97 2o6s_A Variable lymphocyte rec 99.8 9.5E-20 3.2E-24 172.1 14.2 161 74-241 29-189 (208)
98 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.7E-24 196.3 12.4 184 50-261 60-250 (571)
99 3cvr_A Invasion plasmid antige 99.8 3.8E-19 1.3E-23 192.1 15.1 184 74-285 60-251 (571)
100 1m9s_A Internalin B; cell inva 99.8 4E-19 1.4E-23 193.9 12.6 174 21-208 39-212 (605)
101 2p1m_B Transport inhibitor res 99.8 1.9E-20 6.4E-25 205.6 0.9 105 2-107 106-221 (594)
102 2p1m_B Transport inhibitor res 99.8 2.7E-20 9.3E-25 204.3 1.4 296 2-298 131-493 (594)
103 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.6E-23 172.5 14.0 187 29-231 28-214 (291)
104 1m9s_A Internalin B; cell inva 99.8 9.9E-19 3.4E-23 190.8 12.7 192 24-231 20-211 (605)
105 1h6t_A Internalin B; cell adhe 99.8 7.2E-18 2.5E-22 167.8 16.7 189 51-278 26-214 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-18 1.6E-22 161.9 13.0 152 5-159 15-167 (220)
107 2v9t_B SLIT homolog 2 protein 99.7 5.3E-18 1.8E-22 161.5 12.9 151 28-181 14-164 (220)
108 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.4E-22 158.8 15.3 134 25-159 40-173 (229)
109 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 155.2 14.4 154 22-182 41-194 (197)
110 2xot_A Amphoterin-induced prot 99.7 4.9E-18 1.7E-22 174.5 11.7 176 28-206 21-202 (361)
111 2v9t_B SLIT homolog 2 protein 99.7 1.7E-17 5.8E-22 158.0 14.0 150 6-158 16-165 (220)
112 4ezg_A Putative uncharacterize 99.7 2.9E-17 1E-21 153.5 14.4 154 46-230 41-194 (197)
113 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.6E-22 172.0 12.4 178 51-231 20-203 (361)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 8E-22 157.1 13.6 151 27-180 13-164 (220)
115 3e6j_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 155.1 15.8 148 27-178 21-168 (229)
116 1dce_A Protein (RAB geranylger 99.7 4E-20 1.4E-24 200.6 -10.6 203 46-271 346-567 (567)
117 1dce_A Protein (RAB geranylger 99.7 4.7E-20 1.6E-24 200.0 -10.7 189 70-281 346-550 (567)
118 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 160.0 7.9 170 24-232 18-187 (263)
119 1xeu_A Internalin C; cellular 99.7 6.8E-17 2.3E-21 158.2 9.1 171 47-256 17-187 (263)
120 4b8c_D Glucose-repressible alc 99.7 2.6E-17 9E-22 183.9 6.1 218 3-255 175-405 (727)
121 4b8c_D Glucose-repressible alc 99.7 1.9E-17 6.5E-22 185.0 3.5 181 88-278 215-405 (727)
122 2ell_A Acidic leucine-rich nuc 99.6 6.8E-16 2.3E-20 140.2 11.8 133 24-158 23-160 (168)
123 2ell_A Acidic leucine-rich nuc 99.6 2.8E-16 9.6E-21 142.8 8.9 134 2-138 25-163 (168)
124 1w8a_A SLIT protein; signaling 99.6 4.9E-16 1.7E-20 144.6 9.8 131 28-161 11-142 (192)
125 3sb4_A Hypothetical leucine ri 99.6 2.6E-16 9E-21 159.4 7.3 196 72-271 100-328 (329)
126 1w8a_A SLIT protein; signaling 99.6 1.2E-15 4.1E-20 141.9 11.0 132 4-138 11-143 (192)
127 2je0_A Acidic leucine-rich nuc 99.6 5.8E-16 2E-20 137.7 7.4 108 25-134 17-126 (149)
128 3sb4_A Hypothetical leucine ri 99.6 4.8E-16 1.6E-20 157.5 6.8 257 24-290 24-324 (329)
129 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 6E-20 134.6 9.6 128 48-177 16-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 9.8E-15 3.4E-19 135.8 11.5 128 28-159 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2.4E-14 8.3E-19 131.1 13.9 133 27-162 9-141 (177)
132 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.9E-19 132.1 12.7 133 3-138 9-141 (177)
133 2wfh_A SLIT homolog 2 protein 99.6 1.5E-14 5.1E-19 134.5 12.3 128 4-135 13-140 (193)
134 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.5E-21 149.2 -5.5 150 21-175 14-180 (198)
135 1ds9_A Outer arm dynein; leuci 99.5 2.6E-16 8.7E-21 147.2 -4.7 143 4-151 21-180 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-14 8.5E-19 130.9 8.0 133 20-158 14-153 (176)
137 4fdw_A Leucine rich hypothetic 99.5 9.1E-13 3.1E-17 136.6 17.3 260 24-297 112-381 (401)
138 4fdw_A Leucine rich hypothetic 99.5 7E-13 2.4E-17 137.5 15.8 247 18-277 129-383 (401)
139 1a9n_A U2A', U2A'; complex (nu 99.4 1.5E-13 5.1E-18 125.7 7.8 129 45-179 15-150 (176)
140 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 118.5 11.4 108 27-137 11-118 (170)
141 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 116.4 11.5 106 27-135 14-119 (174)
142 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 117.7 10.0 106 4-112 15-120 (174)
143 3g39_A Variable lymphocyte rec 99.4 3.9E-12 1.3E-16 115.5 11.6 109 50-161 10-118 (170)
144 3un9_A NLR family member X1; l 99.2 5.1E-13 1.7E-17 137.2 -2.2 158 73-230 101-283 (372)
145 2ifg_A High affinity nerve gro 99.2 4E-11 1.4E-15 122.0 9.7 104 29-135 12-117 (347)
146 3un9_A NLR family member X1; l 99.2 2.3E-12 7.7E-17 132.3 0.2 62 97-158 72-139 (372)
147 2ifg_A High affinity nerve gro 99.1 5.4E-11 1.8E-15 121.1 8.7 104 5-111 12-117 (347)
148 4fs7_A Uncharacterized protein 99.0 3.5E-09 1.2E-13 109.6 14.6 265 18-295 64-375 (394)
149 2ra8_A Uncharacterized protein 99.0 2.4E-10 8.1E-15 116.4 4.3 138 114-254 165-320 (362)
150 2ra8_A Uncharacterized protein 99.0 5.4E-10 1.9E-14 113.7 6.6 155 69-228 168-341 (362)
151 4gt6_A Cell surface protein; l 98.9 2.8E-08 9.5E-13 102.8 15.2 109 163-276 259-369 (394)
152 4fs7_A Uncharacterized protein 98.8 3.4E-08 1.2E-12 102.1 13.0 220 42-274 155-376 (394)
153 4gt6_A Cell surface protein; l 98.6 2.3E-07 8E-12 95.8 13.3 265 3-276 66-390 (394)
154 4h09_A Hypothetical leucine ri 98.5 4.3E-06 1.5E-10 85.7 18.2 245 20-274 41-320 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 2.1E-08 7.2E-13 92.0 0.6 93 18-110 29-136 (185)
156 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.1E-12 90.4 1.8 80 46-127 167-257 (267)
157 3rw6_A Nuclear RNA export fact 98.3 5.3E-08 1.8E-12 94.1 -2.1 106 45-152 137-258 (267)
158 1io0_A Tropomodulin; LRR prote 98.3 2.8E-07 9.5E-12 84.5 2.7 18 117-134 32-50 (185)
159 4h09_A Hypothetical leucine ri 98.2 2.1E-05 7.2E-10 80.5 16.4 261 3-274 48-343 (379)
160 3e4g_A ATP synthase subunit S, 98.1 2.6E-06 8.8E-11 76.4 4.9 94 16-109 52-151 (176)
161 3e4g_A ATP synthase subunit S, 98.0 1.9E-06 6.5E-11 77.3 2.9 85 49-133 61-151 (176)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00026 9E-09 64.5 2.1 64 23-86 39-111 (197)
163 2k1k_A Ephrin type-A receptor 96.8 0.00022 7.6E-09 45.5 0.2 30 532-561 9-38 (38)
164 2ks1_B Epidermal growth factor 96.8 0.00025 8.7E-09 46.7 0.3 34 532-565 9-42 (44)
165 2l2t_A Receptor tyrosine-prote 96.7 0.00026 9E-09 46.5 0.2 34 532-565 8-41 (44)
166 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0013 4.5E-08 59.9 4.9 10 97-106 41-50 (197)
167 3rfe_A Platelet glycoprotein I 96.4 0.0049 1.7E-07 52.3 6.0 55 197-253 12-67 (130)
168 3rfe_A Platelet glycoprotein I 95.7 0.009 3.1E-07 50.6 4.5 56 29-86 12-68 (130)
169 2jwa_A Receptor tyrosine-prote 94.9 0.003 1E-07 41.4 -0.9 30 533-563 11-40 (44)
170 2k9y_A Ephrin type-A receptor 91.4 0.029 1E-06 36.6 -0.4 13 534-546 13-25 (41)
171 2l34_A TYRO protein tyrosine k 83.7 0.14 4.9E-06 31.3 -0.8 25 533-557 6-30 (33)
172 1iij_A ERBB-2 receptor protein 82.3 0.073 2.5E-06 32.9 -2.5 25 536-561 10-34 (35)
173 2klu_A T-cell surface glycopro 81.2 0.83 2.8E-05 32.3 2.2 15 539-553 12-26 (70)
174 2o14_A Hypothetical protein YX 77.1 17 0.00057 36.3 11.5 77 414-520 80-156 (375)
175 2llm_A Amyloid beta A4 protein 73.8 0.84 2.9E-05 29.3 0.0 15 532-546 15-29 (43)
176 2w47_A Lipolytic enzyme, G-D-S 59.1 52 0.0018 27.4 9.2 92 411-522 42-134 (144)
177 2w3j_A Carbohydrate binding mo 55.1 46 0.0016 27.9 8.1 87 414-520 43-130 (145)
178 2wz8_A Cellulosome protein doc 52.9 75 0.0025 27.0 9.1 96 414-519 51-149 (156)
179 2vzp_A Aocbm35, EXO-beta-D-glu 51.4 49 0.0017 26.8 7.5 70 411-491 41-111 (127)
180 2l8s_A Integrin alpha-1; trans 49.9 3.1 0.00011 28.4 -0.2 15 532-546 8-22 (54)
181 2l6w_A Beta-type platelet-deri 53.4 3.9 0.00013 25.7 0.0 9 555-563 29-37 (39)
182 2ks1_B Epidermal growth factor 47.3 6.6 0.00023 25.7 1.0 30 538-567 12-41 (44)
183 2k1a_A Integrin alpha-IIB; sin 46.3 4.8 0.00016 26.0 0.2 13 533-545 10-22 (42)
184 2w87_A Esterase D, XYL-CBM35; 40.5 65 0.0022 26.7 6.6 86 414-518 43-130 (139)
185 2l9u_A Receptor tyrosine-prote 39.5 13 0.00046 22.4 1.4 9 554-562 26-34 (40)
186 2lz0_A Uncharacterized protein 37.7 66 0.0023 25.0 5.8 45 37-82 8-52 (100)
187 2knc_A Integrin alpha-IIB; tra 34.2 30 0.001 23.7 2.7 14 533-546 12-25 (54)
188 2lp1_A C99; alzheimer'S D memb 39.5 9 0.00031 30.4 0.0 13 534-546 30-42 (122)
189 1s7q_A H-2KB, H-2 class I hist 30.7 10 0.00036 37.4 0.0 11 535-545 282-292 (348)
190 2lz0_A Uncharacterized protein 28.5 83 0.0028 24.4 5.0 45 61-106 8-52 (100)
191 1q55_A EP-cadherin, C-cadherin 20.8 21 0.00071 40.1 0.0 14 533-546 704-717 (880)
192 2ifo_A Inovirus; helical virus 20.4 62 0.0021 21.2 2.2 20 541-560 25-44 (46)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-39 Score=364.13 Aligned_cols=303 Identities=30% Similarity=0.432 Sum_probs=243.9
Q ss_pred eeEEEEeCcccccccchhhcCCC-CCcEEEccCCcCCCCCchhhcC--CCCCcEEEeeccCCCCCCccccCCCcCCcEEE
Q 008072 3 HGHLKMRILVLLVTLPSELFMLR-KLMDLNLGQNVLNGSIPAEIGQ--LSNMQYLSLGINNFTGRVPTELGNLTKLISLS 79 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 79 (579)
|++|+|++|.+.+.+|..+.+++ +|++|++++|.+++.+|..+.. +++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 33444444444444444444433 4444444444444444444433 55677777777777777888888888999999
Q ss_pred eecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC
Q 008072 80 FSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 80 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
+++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 99998888888888899999999999999998889999999999999999999998889999999999999999999999
Q ss_pred CchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhc-------------------------
Q 008072 160 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG------------------------- 214 (579)
Q Consensus 160 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~------------------------- 214 (579)
.+|.++..+++|++|++++|.+....+..+..+++|+.|+|++|.+++.+|..+.
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 9999999999999999999988877888888999999999999988877775432
Q ss_pred ---------------------------------------------CCCCCCEEeccCCcCCCCCchhccCCCCCcEEEec
Q 008072 215 ---------------------------------------------TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLG 249 (579)
Q Consensus 215 ---------------------------------------------~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 249 (579)
.+++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 34678999999999999999999999999999999
Q ss_pred CccCCCCCCcccc-CCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccCCCCCCCCCcc
Q 008072 250 NNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINANNLQDGKALG 310 (579)
Q Consensus 250 ~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~~~~~~~~p~~ 310 (579)
+|+++|.+|..+. +++|+.|||++|+++|.+|..+.. +.|+ +++++|+++ |.+|..
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-----g~iP~~ 723 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS-----GPIPEM 723 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE-----EECCSS
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc-----ccCCCc
Confidence 9999999997764 799999999999999999998887 6666 899999886 577754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-37 Score=351.05 Aligned_cols=257 Identities=33% Similarity=0.527 Sum_probs=146.3
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchh-hcCCCCCcEEEeeccCCCCCCccccCCCc-CCcEEE
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAE-IGQLSNMQYLSLGINNFTGRVPTELGNLT-KLISLS 79 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~ 79 (579)
+|++|+|++|.+.+.+|..|.++++|++|+|++|.+++.+|.. +..+++|++|+|++|++++.+|..+..++ +|++|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 4777888888888888888888888888888888887777765 77777888888888777777776666555 566666
Q ss_pred eecccCCCCCchhhCC--CCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcC
Q 008072 80 FSSNNFFGPLPKELGK--LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 157 (579)
Q Consensus 80 Ls~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 157 (579)
+++|.+.+.+|..+.. +++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 6666555444444443 44455555555555444444444455555555555544444444444444444555544444
Q ss_pred CCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhc
Q 008072 158 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 237 (579)
Q Consensus 158 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 237 (579)
.+.+|..+..+++|++|++++|.+....+..+..+++|+.|+|++|++++.+|.++..+++|++|+|++|++++.+|..+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCCCCCcEEEecCccCCCCCC
Q 008072 238 QDLSTLQYLYLGNNNLSGELP 258 (579)
Q Consensus 238 ~~l~~L~~L~L~~N~l~~~ip 258 (579)
..+++|+.|+|++|+++|.+|
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCC
T ss_pred cCCCCCCEEECCCCccCCcCC
Confidence 444444444444444444444
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-35 Score=314.68 Aligned_cols=298 Identities=18% Similarity=0.182 Sum_probs=213.6
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCC-chhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEe
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 80 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 80 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|+.+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 5899999999999988999999999999999999998665 567899999999999999999888999999999999999
Q ss_pred ecccCCCCCchh--hCCCCCCcEEEeccCCCCCCcchh-hhCCCCCcEEEccCCcCCCCCchhhcCc-------------
Q 008072 81 SSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIPQE-FANLKSLRILWASDNLFTGKIPEFFGTL------------- 144 (579)
Q Consensus 81 s~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l------------- 144 (579)
++|.+.+..+.. +..+++|++|++++|++.+..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 999998765555 889999999999999999887776 8899999999999999988777666544
Q ss_pred ---------------------cccceeeecCCcCCCCchhhhhcC-----------------------------------
Q 008072 145 ---------------------TELADLRLQGTLLEGPIPRSFRAL----------------------------------- 168 (579)
Q Consensus 145 ---------------------~~L~~L~l~~n~l~~~~p~~~~~l----------------------------------- 168 (579)
++|+.|++++|.+.+..|..+...
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence 567777777777766655554332
Q ss_pred ----CCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCc
Q 008072 169 ----NKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQ 244 (579)
Q Consensus 169 ----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 244 (579)
++|+.|++++|.+....+..+..+++|+.|+|++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|+
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 3455555555555444445555555666666666665555555555556666666666665555555555556666
Q ss_pred EEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 245 YLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 245 ~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
.|+|++|++++..|..+ .+++|++|++++|++++..+..+.. +.++ +++++|++.
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 66666666554444333 2455666666666665443333333 3343 555555554
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=308.67 Aligned_cols=300 Identities=22% Similarity=0.215 Sum_probs=258.5
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+++.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|.++++|++|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 57889999999998888889999999999999999998788899999999999999999986666678899999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 99998888888999999999999999999878888999999999999999999777778899999999999999998877
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
+..+..+++|++|++++|......+.......+|+.|+|++|.++...+..+..+++|+.|+|++|.+++..+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 77889999999999998876655444444556899999999999855546788999999999999999977777889999
Q ss_pred CCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccCC
Q 008072 242 TLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINAN 301 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~~ 301 (579)
+|+.|+|++|++++..|..+. +++|+.|+|++|++++..+..+.. +.++ +++++|++.++
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999977675553 689999999999999766655555 5555 89999998754
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-34 Score=321.36 Aligned_cols=291 Identities=18% Similarity=0.286 Sum_probs=255.2
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCc---------------------------------------------
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNV--------------------------------------------- 36 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~--------------------------------------------- 36 (579)
.++.|+|+++++.|.+|++++++++|++|+|++|.
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 47899999999999999999999999999999884
Q ss_pred ---------------------------------CCCCCchhhcCCCCCcEEEeeccCCCCC-----------------Cc
Q 008072 37 ---------------------------------LNGSIPAEIGQLSNMQYLSLGINNFTGR-----------------VP 66 (579)
Q Consensus 37 ---------------------------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p 66 (579)
+++ +|..++++++|++|+|++|.+++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 334 788899999999999999999986 99
Q ss_pred cccC--CCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCC-CCC-CcchhhhCC------CCCcEEEccCCcCCCC
Q 008072 67 TELG--NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-VTG-SIPQEFANL------KSLRILWASDNLFTGK 136 (579)
Q Consensus 67 ~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~ 136 (579)
..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 9999 99999999999999999999999999999999999998 998 899988876 99999999999999 8
Q ss_pred Cch--hhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCC-CCEEEcccCcCCCCcchhh
Q 008072 137 IPE--FFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKS-LSILSLRNCRVSGKIPDQL 213 (579)
Q Consensus 137 ~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~~~~~ 213 (579)
+|. .++.+++|+.|++++|.+.|.+| .+..+++|++|++++|.+. ..+..+..+++ |+.|+|++|.++ .+|..+
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 888 89999999999999999998888 8999999999999999877 44455778888 999999999998 788777
Q ss_pred cCCC--CCCEEeccCCcCCCCCchhcc-------CCCCCcEEEecCccCCCCCCcccc--CCCCcEEEcccCCCCCCCCc
Q 008072 214 GTFA--KLQLLDLSFNKLTGQIPTSLQ-------DLSTLQYLYLGNNNLSGELPVNII--APNLIALDVSYNPLSGNLPR 282 (579)
Q Consensus 214 ~~l~--~L~~L~Ls~n~l~~~~p~~l~-------~l~~L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N~l~~~~p~ 282 (579)
..++ +|++|++++|.+++.+|..+. .+++|+.|+|++|+++ .+|.... +++|++|+|++|+++ .+|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence 6654 899999999999988888887 7788999999999998 5665443 688999999999998 6665
Q ss_pred cccc-C--------Cce-EEeeccccc
Q 008072 283 NFAK-G--------GLS-MNVIGSSIN 299 (579)
Q Consensus 283 ~~~~-~--------~l~-l~l~~n~~~ 299 (579)
.... . .++ +++++|.+.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred HHhccccccccccCCccEEECcCCcCC
Confidence 5444 2 555 888888876
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-34 Score=317.14 Aligned_cols=309 Identities=22% Similarity=0.274 Sum_probs=257.4
Q ss_pred CeeEEEEeCcccccc-----------------cchhhc--CCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccC-C
Q 008072 2 PHGHLKMRILVLLVT-----------------LPSELF--MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-F 61 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~-----------------lp~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l 61 (579)
+|++|+|++|.+.+. +|+.++ ++++|++|+|++|.+.+.+|..+.++++|++|+|++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 689999999999996 999999 99999999999999999999999999999999999998 9
Q ss_pred CC-CCccccCCC------cCCcEEEeecccCCCCCch--hhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCc
Q 008072 62 TG-RVPTELGNL------TKLISLSFSSNNFFGPLPK--ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNL 132 (579)
Q Consensus 62 ~~-~~p~~~~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 132 (579)
++ .+|..++.+ ++|++|++++|++. .+|. .++++++|++|++++|++.|.+| .+..+++|+.|++++|.
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 98 899888876 99999999999998 8888 89999999999999999998889 88899999999999999
Q ss_pred CCCCCchhhcCccc-cceeeecCCcCCCCchhhhhcCC--CCCeeEcCCCCCCCCChhhhc-------CCCCCCEEEccc
Q 008072 133 FTGKIPEFFGTLTE-LADLRLQGTLLEGPIPRSFRALN--KLEDLRIGDLSAEDSTLDFLE-------SQKSLSILSLRN 202 (579)
Q Consensus 133 l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~Ls~ 202 (579)
+. .+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+....+..+. .+++|+.|+|++
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 88 78888889998 999999999988 7787777655 899999999988877666666 677899999999
Q ss_pred CcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhc-cCC-------CCCcEEEecCccCCCCCCccc---cCCCCcEEEc
Q 008072 203 CRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL-QDL-------STLQYLYLGNNNLSGELPVNI---IAPNLIALDV 271 (579)
Q Consensus 203 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l-------~~L~~L~L~~N~l~~~ip~~~---~~~~L~~Ldl 271 (579)
|.++...+..+..+++|++|+|++|+++ .+|... ... ++|+.|+|++|+++ .+|..+ .+++|+.|+|
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEEC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEEC
Confidence 9998433344566899999999999998 555433 222 28999999999998 677655 4688999999
Q ss_pred ccCCCCCCCCccccc-CCce-EEeecccc-cCCCCCCCCCccccccccc
Q 008072 272 SYNPLSGNLPRNFAK-GGLS-MNVIGSSI-NANNLQDGKALGMMQCLHS 317 (579)
Q Consensus 272 s~N~l~~~~p~~~~~-~~l~-l~l~~n~~-~~~~~~~~~p~~~~~~~~~ 317 (579)
++|++++ +|..+.. +.|+ +++++|.. +.+...+.+|..+..+...
T Consensus 521 s~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 9999997 7877766 6666 78866542 2344456777665555443
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-33 Score=300.13 Aligned_cols=280 Identities=20% Similarity=0.192 Sum_probs=245.9
Q ss_pred CeeEEEEeCccccccc-chhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccc--cCCCcCCcEE
Q 008072 2 PHGHLKMRILVLLVTL-PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTE--LGNLTKLISL 78 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L 78 (579)
+|++|+|++|.+.+.+ |..|..+++|++|+|++|.+++..|..+.++++|++|+|++|.+++..|.. |..+++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 6899999999998766 456889999999999999999888999999999999999999998766655 8999999999
Q ss_pred EeecccCCCCCchh-hCCCCCCcEEEeccCCCCCCcchhhhCC----------------------------------CCC
Q 008072 79 SFSSNNFFGPLPKE-LGKLTSLQQLYIDSSGVTGSIPQEFANL----------------------------------KSL 123 (579)
Q Consensus 79 ~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l----------------------------------~~L 123 (579)
++++|.+.+..|.. +.++++|++|++++|++.+..+..+..+ ++|
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 99999999887776 7899999999999999988777655443 679
Q ss_pred cEEEccCCcCCCCCchhhcC---------------------------------------ccccceeeecCCcCCCCchhh
Q 008072 124 RILWASDNLFTGKIPEFFGT---------------------------------------LTELADLRLQGTLLEGPIPRS 164 (579)
Q Consensus 124 ~~L~L~~n~l~~~~p~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~p~~ 164 (579)
++|++++|.+.+..|..+.. .++|+.|++++|.+.+.+|..
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 99999999887655544422 257999999999999888999
Q ss_pred hhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCc
Q 008072 165 FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQ 244 (579)
Q Consensus 165 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 244 (579)
+..+++|++|++++|.+....+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 99999999999999999988888899999999999999999987888999999999999999999988899999999999
Q ss_pred EEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCC
Q 008072 245 YLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 245 ~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p 281 (579)
.|+|++|++++..+..+ .+++|+.|++++|++++..|
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999996444333 47999999999999999888
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-33 Score=307.52 Aligned_cols=297 Identities=21% Similarity=0.232 Sum_probs=265.5
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 6889999999999888888999999999999999998 788889999999999999999998888899999999999999
Q ss_pred cccCCCCCchh-hCCCCCCcEEEeccCCCCCCc--chhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCC
Q 008072 82 SNNFFGPLPKE-LGKLTSLQQLYIDSSGVTGSI--PQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 158 (579)
Q Consensus 82 ~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 158 (579)
+|.+.+.+|.. +..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 99988766654 889999999999999998765 778999999999999999999888889999999999999999998
Q ss_pred CCchh-hhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCC---cchhhcCCCCCCEEeccCCcCCCCCc
Q 008072 159 GPIPR-SFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGK---IPDQLGTFAKLQLLDLSFNKLTGQIP 234 (579)
Q Consensus 159 ~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~p 234 (579)
+..+. .+..+++|++|++++|.+....+..+..+++|+.|+|++|.+++. .+..+..+++|++|++++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 77665 489999999999999999888888899999999999999999863 23568889999999999999998888
Q ss_pred hhccCCCCCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccC
Q 008072 235 TSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 300 (579)
Q Consensus 235 ~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~ 300 (579)
..+..+++|+.|+|++|++++..|..+. +++| .|++++|++++..|..+.. +.++ +++++|++.+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999999999999999988776554 6888 9999999999888876666 5555 8999999975
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=299.01 Aligned_cols=290 Identities=17% Similarity=0.183 Sum_probs=173.6
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 4677888888877777777777888888888888877666777777888888888888777 45554 67778888888
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCC--cEEEccCCcC--CCCCchhhcCcc-----------
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL--RILWASDNLF--TGKIPEFFGTLT----------- 145 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~p~~~~~l~----------- 145 (579)
+|.+.+ .+|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 887776 466777777778777777777764 334445555 6666666665 334444333311
Q ss_pred ------------------------------------------------------------------------ccceeeec
Q 008072 146 ------------------------------------------------------------------------ELADLRLQ 153 (579)
Q Consensus 146 ------------------------------------------------------------------------~L~~L~l~ 153 (579)
+|+.|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 45555555
Q ss_pred CCcCCCCchhhh-----hcCCCCCeeEcCCCCC--------------------------CCCChhhhcCCCCCCEEEccc
Q 008072 154 GTLLEGPIPRSF-----RALNKLEDLRIGDLSA--------------------------EDSTLDFLESQKSLSILSLRN 202 (579)
Q Consensus 154 ~n~l~~~~p~~~-----~~l~~L~~L~l~~~~~--------------------------~~~~~~~l~~~~~L~~L~Ls~ 202 (579)
+|.+.+.+|..+ ..+++|+.++++.+.+ .... ....+++|++|++++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred cccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeEC
Confidence 555555555544 3333333333222222 1111 013455666666666
Q ss_pred CcCCCCcchhhcCCCCCCEEeccCCcCCC--CCchhccCCCCCcEEEecCccCCCCCCccc--cCCCCcEEEcccCCCCC
Q 008072 203 CRVSGKIPDQLGTFAKLQLLDLSFNKLTG--QIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSG 278 (579)
Q Consensus 203 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~--~~~~L~~Ldls~N~l~~ 278 (579)
|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|... .+++|++|++++|++++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 66665556666666666666666666654 344455666666666666666665455331 24566666666666655
Q ss_pred CCCcccccCCceEEeeccccc
Q 008072 279 NLPRNFAKGGLSMNVIGSSIN 299 (579)
Q Consensus 279 ~~p~~~~~~~l~l~l~~n~~~ 299 (579)
.+|..+....-.+++++|.+.
T Consensus 414 ~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 414 TIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp GGGGSCCTTCCEEECCSSCCC
T ss_pred chhhhhcccCCEEECCCCccc
Confidence 555433322222555555553
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.7e-33 Score=311.54 Aligned_cols=308 Identities=21% Similarity=0.246 Sum_probs=243.1
Q ss_pred CeeEEEEeCccccc-----------------ccchhhc--CCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccC-C
Q 008072 2 PHGHLKMRILVLLV-----------------TLPSELF--MLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-F 61 (579)
Q Consensus 2 ~L~~L~l~~~~l~~-----------------~lp~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l 61 (579)
+|+.|+|++|.+.+ .+|+.++ ++++|++|+|++|.+.+.+|..+.++++|++|+|++|+ +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 68899999999998 4999987 99999999999999999999999999999999999998 8
Q ss_pred CC-CCccccCCCc-------CCcEEEeecccCCCCCch--hhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCC
Q 008072 62 TG-RVPTELGNLT-------KLISLSFSSNNFFGPLPK--ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN 131 (579)
Q Consensus 62 ~~-~~p~~~~~l~-------~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 131 (579)
++ .+|..++.++ +|++|+|++|.+. .+|. .+.++++|++|++++|++. .+| .+..+++|+.|+|++|
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 87 7887766655 9999999999998 7888 8999999999999999998 788 8899999999999999
Q ss_pred cCCCCCchhhcCccc-cceeeecCCcCCCCchhhhhcCCC--CCeeEcCCCCCCCCChhh---hc--CCCCCCEEEcccC
Q 008072 132 LFTGKIPEFFGTLTE-LADLRLQGTLLEGPIPRSFRALNK--LEDLRIGDLSAEDSTLDF---LE--SQKSLSILSLRNC 203 (579)
Q Consensus 132 ~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l~~--L~~L~l~~~~~~~~~~~~---l~--~~~~L~~L~Ls~n 203 (579)
.+. .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+....+.. +. .+++|+.|+|++|
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 998 88888999998 999999999988 77877776654 888888888876543221 11 3347888888888
Q ss_pred cCCCCcchh-hcCCCCCCEEeccCCcCCCCCchhccCC--------CCCcEEEecCccCCCCCCccc---cCCCCcEEEc
Q 008072 204 RVSGKIPDQ-LGTFAKLQLLDLSFNKLTGQIPTSLQDL--------STLQYLYLGNNNLSGELPVNI---IAPNLIALDV 271 (579)
Q Consensus 204 ~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l--------~~L~~L~L~~N~l~~~ip~~~---~~~~L~~Ldl 271 (579)
.++ .+|.. +..+++|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+ .+++|+.|+|
T Consensus 684 ~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 684 EIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp CCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred cCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence 888 55554 447788888888888887 555543322 27888888888888 667555 3678888888
Q ss_pred ccCCCCCCCCccccc-CCce-EEeeccc-ccCCCCCCCCCcccccccccC
Q 008072 272 SYNPLSGNLPRNFAK-GGLS-MNVIGSS-INANNLQDGKALGMMQCLHSN 318 (579)
Q Consensus 272 s~N~l~~~~p~~~~~-~~l~-l~l~~n~-~~~~~~~~~~p~~~~~~~~~~ 318 (579)
++|++++ +|..+.. +.|+ +++++|. ++.+.+.+.+|..+..|....
T Consensus 761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp CSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 8888887 6766666 5565 7777654 233444566776665555443
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.4e-34 Score=286.55 Aligned_cols=252 Identities=25% Similarity=0.414 Sum_probs=178.7
Q ss_pred CCCcEEEccCCcCCC--CCchhhcCCCCCcEEEeec-cCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcE
Q 008072 25 RKLMDLNLGQNVLNG--SIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 101 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 101 (579)
.+++.|+|++|.+++ .+|..+.++++|++|+|++ |.+.+.+|..|+.+++|++|++++|.+.+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 6777777777777777774 7777677777777777777777777776667777777777777
Q ss_pred EEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCcc-ccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCC
Q 008072 102 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT-ELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 180 (579)
Q Consensus 102 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~ 180 (579)
|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+.+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777777777777777777777777777766777777766 777777777777766776676665 7777776666
Q ss_pred CCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcc
Q 008072 181 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVN 260 (579)
Q Consensus 181 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~ 260 (579)
+....+..+..+++|+.|+|++|.+++.++. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6655666666667777777777777655554 566677777777777777677777777777777777777777777765
Q ss_pred ccCCCCcEEEcccCC-CCC
Q 008072 261 IIAPNLIALDVSYNP-LSG 278 (579)
Q Consensus 261 ~~~~~L~~Ldls~N~-l~~ 278 (579)
..+++|+.|++++|+ +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 456667777777776 444
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.4e-34 Score=286.97 Aligned_cols=251 Identities=31% Similarity=0.480 Sum_probs=236.9
Q ss_pred CeeEEEEeCccccc--ccchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEE
Q 008072 2 PHGHLKMRILVLLV--TLPSELFMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISL 78 (579)
Q Consensus 2 ~L~~L~l~~~~l~~--~lp~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 78 (579)
.+++|+|+++++.+ .+|+.|.++++|++|+|++ |.+.+.+|..+.++++|++|+|++|.+++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 58999999999999 9999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCC-CCcEEEccCCcCCCCCchhhcCccccceeeecCCcC
Q 008072 79 SFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLK-SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 157 (579)
Q Consensus 79 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 157 (579)
++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+.+|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999999999999999999999999999999999999999998 999999999999999999999987 99999999999
Q ss_pred CCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhc
Q 008072 158 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSL 237 (579)
Q Consensus 158 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 237 (579)
.+.+|..+..+++|+.|++++|.+....+. +..+++|++|+|++|.+++.+|..+..+++|++|+|++|++++.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 999999999999999999999988755444 778899999999999999999999999999999999999999999875
Q ss_pred cCCCCCcEEEecCcc-CCC
Q 008072 238 QDLSTLQYLYLGNNN-LSG 255 (579)
Q Consensus 238 ~~l~~L~~L~L~~N~-l~~ 255 (579)
..+++|+.|++++|+ +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 889999999999998 544
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-32 Score=307.15 Aligned_cols=296 Identities=20% Similarity=0.280 Sum_probs=253.7
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCc-CCC-CCchhhcCCC-------CCcEEEeeccCCCCCCcc--ccC
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNV-LNG-SIPAEIGQLS-------NMQYLSLGINNFTGRVPT--ELG 70 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~Ls~n~l~~~~p~--~~~ 70 (579)
+|+.|+|++|.+.+.+|..|.++++|++|+|++|. +++ .+|..+..++ +|++|+|++|.++ .+|. .|+
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 58999999999999999999999999999999998 998 8998887766 9999999999999 8888 899
Q ss_pred CCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCC-CcEEEccCCcCCCCCchhhcCccc--c
Q 008072 71 NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKS-LRILWASDNLFTGKIPEFFGTLTE--L 147 (579)
Q Consensus 71 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L 147 (579)
.+++|++|+|++|.+. .+| .++++++|++|++++|++. .+|..+..+++ |+.|+|++|.+. .+|..+..++. |
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 9999999999999998 788 8999999999999999999 88999999999 999999999998 78888777654 9
Q ss_pred ceeeecCCcCCCCchhh---hh--cCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCC------
Q 008072 148 ADLRLQGTLLEGPIPRS---FR--ALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTF------ 216 (579)
Q Consensus 148 ~~L~l~~n~l~~~~p~~---~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l------ 216 (579)
+.|++++|.+.+.+|.. +. .+++|+.|++++|.+...+...+..+++|+.|+|++|.++ .+|..+...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccc
Confidence 99999999998876632 22 3458999999999988777666778899999999999998 666654332
Q ss_pred --CCCCEEeccCCcCCCCCchhcc--CCCCCcEEEecCccCCCCCCccc-cCCCCcEEEccc------CCCCCCCCcccc
Q 008072 217 --AKLQLLDLSFNKLTGQIPTSLQ--DLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSY------NPLSGNLPRNFA 285 (579)
Q Consensus 217 --~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~------N~l~~~~p~~~~ 285 (579)
++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+ .+++|+.|+|++ |++.+.+|..+.
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 38999999999998 7788776 89999999999999997 67554 478999999976 788889998887
Q ss_pred c-CCce-EEeecccccCCCCCCCCCccc
Q 008072 286 K-GGLS-MNVIGSSINANNLQDGKALGM 311 (579)
Q Consensus 286 ~-~~l~-l~l~~n~~~~~~~~~~~p~~~ 311 (579)
. +.|+ +++++|.+. .+|..+
T Consensus 804 ~L~~L~~L~Ls~N~L~------~Ip~~l 825 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIR------KVDEKL 825 (876)
T ss_dssp GCSSCCEEECCSSCCC------BCCSCC
T ss_pred cCCCCCEEECCCCCCC------ccCHhh
Confidence 7 6666 899998873 566543
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-32 Score=296.54 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=72.7
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 3556666666666555556666666666666666666555555666666666666666665 44443 56666666666
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCC--cEEEccCCcC
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL--RILWASDNLF 133 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l 133 (579)
+|++.+ .+|..++++++|++|++++|++.+. .+..+++| +.|++++|.+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 666554 2345566666666666666665532 22333333 6666665555
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=292.54 Aligned_cols=283 Identities=19% Similarity=0.140 Sum_probs=257.7
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 58999999999999999999999999999999999996666678999999999999999998888899999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 99999888889999999999999999999877788999999999999999999877788999999999999999988888
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
|.......+|++|++++|.+.......+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..++
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 88777778999999999999988888899999999999999999977777899999999999999999988899999999
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccc
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNF 284 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~ 284 (579)
+|+.|+|++|++++..+..+ .+++|+.|+|++|+++..-+..|
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 99999999999995444333 36899999999999986544333
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-32 Score=300.57 Aligned_cols=155 Identities=20% Similarity=0.165 Sum_probs=106.5
Q ss_pred ccccceeeecCCcCCCC--chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcc-hhhcCCCCCC
Q 008072 144 LTELADLRLQGTLLEGP--IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQ 220 (579)
Q Consensus 144 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 220 (579)
+++|+.|++++|.+.+. +|..+..+++|++|++++|.+.... ..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 34556666666666544 3777888888888888888765543 556667777777777777776655 4666777777
Q ss_pred EEeccCCcCCCCCchhccCCCCCcEEEecCccCCCC-CCccc-cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeecc
Q 008072 221 LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE-LPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGS 296 (579)
Q Consensus 221 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n 296 (579)
+|++++|.+++..|..+..+++|+.|++++|++++. +|..+ .+++|++|++++|++++..|..+.. +.++ +++++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 777777777776777777777777777777777763 44433 3577777777777777766666655 5554 677777
Q ss_pred ccc
Q 008072 297 SIN 299 (579)
Q Consensus 297 ~~~ 299 (579)
.+.
T Consensus 508 ~l~ 510 (606)
T 3vq2_A 508 NLL 510 (606)
T ss_dssp CCS
T ss_pred cCC
Confidence 665
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-32 Score=300.51 Aligned_cols=296 Identities=19% Similarity=0.165 Sum_probs=221.9
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 46788888888887777778888888888888888887667778888888888888888887777788888888888888
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCC-CcchhhhCCCCCcEEEccCCcCCCCCchhhcCcc---------------
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLT--------------- 145 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~--------------- 145 (579)
+|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.++
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC
Confidence 888876666677888888888888888775 5677788888888888888777654443322222
Q ss_pred --------------------------------------------------------------------------------
Q 008072 146 -------------------------------------------------------------------------------- 145 (579)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (579)
T Consensus 193 l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT
T ss_pred cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccc
Confidence
Q ss_pred -----------------------------------ccceeeecCCcCCCCchh--------------------hhhcCCC
Q 008072 146 -----------------------------------ELADLRLQGTLLEGPIPR--------------------SFRALNK 170 (579)
Q Consensus 146 -----------------------------------~L~~L~l~~n~l~~~~p~--------------------~~~~l~~ 170 (579)
+|+.|++++|.+ +.+|. .+..+++
T Consensus 273 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~ 351 (606)
T 3vq2_A 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351 (606)
T ss_dssp TCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTT
T ss_pred cccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCC
Confidence 223333333333 22221 1223344
Q ss_pred CCeeEcCCCCCCCC--ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCc-hhccCCCCCcEEE
Q 008072 171 LEDLRIGDLSAEDS--TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP-TSLQDLSTLQYLY 247 (579)
Q Consensus 171 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ 247 (579)
|++|++++|.+... .+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..| ..+..+++|+.|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 45555555444333 2566788999999999999988 466788999999999999999998877 6789999999999
Q ss_pred ecCccCCCCCCccc-cCCCCcEEEcccCCCCCC-CCccccc-CCce-EEeeccccc
Q 008072 248 LGNNNLSGELPVNI-IAPNLIALDVSYNPLSGN-LPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 248 L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~-~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+++|++++..|..+ .+++|++|++++|++++. +|..+.. +.++ +++++|.+.
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 99999998887655 379999999999999984 6777766 6666 899999886
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-32 Score=298.93 Aligned_cols=297 Identities=19% Similarity=0.155 Sum_probs=225.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
.+++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 47889999999998888889999999999999999988788889999999999999999988888889999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccc--eeeecCCcCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA--DLRLQGTLLEG 159 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~--~L~l~~n~l~~ 159 (579)
+|.+.+..+..+.++++|++|++++|++.+.....+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9998876677788899999999999998875444455588999999999998877788888888888 78888888876
Q ss_pred CchhhhhcC---------------------------------------------------CCCCeeEcCCCCCCCCChhh
Q 008072 160 PIPRSFRAL---------------------------------------------------NKLEDLRIGDLSAEDSTLDF 188 (579)
Q Consensus 160 ~~p~~~~~l---------------------------------------------------~~L~~L~l~~~~~~~~~~~~ 188 (579)
..|..+... .+|+.|++++|.+.......
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 555443321 04556666666666666666
Q ss_pred hcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc--cCCCC
Q 008072 189 LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNL 266 (579)
Q Consensus 189 l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~--~~~~L 266 (579)
+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|... .+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 667777777777777776 566666777777777777777776666667777777777777777766665432 25677
Q ss_pred cEEEcccCCCCCCC--Cccccc-CCce-EEeeccccc
Q 008072 267 IALDVSYNPLSGNL--PRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 267 ~~Ldls~N~l~~~~--p~~~~~-~~l~-l~l~~n~~~ 299 (579)
++|++++|++++.. |..+.. +.++ +++++|.+.
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 77777777776554 444444 4444 666666654
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=305.42 Aligned_cols=299 Identities=19% Similarity=0.203 Sum_probs=248.4
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCC-chhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEe
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSI-PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 80 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 80 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|+|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 5889999999999999999999999999999999766666 778999999999999999999888999999999999999
Q ss_pred ecccCCCCCchh--hCCCCCCcEEEeccCCCCCCcc-hhhhCCCCCcEEEccCCcCCCCCchhhcCc--cccceeeecCC
Q 008072 81 SSNNFFGPLPKE--LGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTL--TELADLRLQGT 155 (579)
Q Consensus 81 s~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~l~~n 155 (579)
++|.+.+.+|.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|+++.|
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 999998877765 8899999999999999987654 679999999999999999998888888777 78999999999
Q ss_pred cCCCCchhhhhcCCC------CCeeEcCCCCCCCCChhh------------------------------------hcC--
Q 008072 156 LLEGPIPRSFRALNK------LEDLRIGDLSAEDSTLDF------------------------------------LES-- 191 (579)
Q Consensus 156 ~l~~~~p~~~~~l~~------L~~L~l~~~~~~~~~~~~------------------------------------l~~-- 191 (579)
.+.+..|..+..+.+ |+.|++++|.+....+.. +.+
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 988877776666655 888888887554332211 111
Q ss_pred CCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc-cCCCCcEEE
Q 008072 192 QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALD 270 (579)
Q Consensus 192 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ld 270 (579)
.++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+ .+++|+.|+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 2678888888888887777788888888888888888887778788888888888888888886666544 368888888
Q ss_pred cccCCCCCCCCccccc-CCce-EEeecccccC
Q 008072 271 VSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 300 (579)
Q Consensus 271 ls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~ 300 (579)
+++|++++..+..+.. +.|+ +++++|.+..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 8888888776666655 5565 7888887763
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.6e-31 Score=291.16 Aligned_cols=131 Identities=24% Similarity=0.261 Sum_probs=81.8
Q ss_pred hcCCCCCeeEcCCCCCCCCCh---hhhcCCCCCCEEEcccCcCCCCcc--hhhcCCCCCCEEeccCCcCCCCCchhccCC
Q 008072 166 RALNKLEDLRIGDLSAEDSTL---DFLESQKSLSILSLRNCRVSGKIP--DQLGTFAKLQLLDLSFNKLTGQIPTSLQDL 240 (579)
Q Consensus 166 ~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 240 (579)
..+++|++|++++|.+....+ ..+..+++|+.|+|++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 457777777777777654332 124556677777777777764322 34566677777777777766 456556666
Q ss_pred CCCcEEEecCccCCCCCCcc-------------------ccCCCCcEEEcccCCCCCCCCcccccCCce-EEeeccccc
Q 008072 241 STLQYLYLGNNNLSGELPVN-------------------IIAPNLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSIN 299 (579)
Q Consensus 241 ~~L~~L~L~~N~l~~~ip~~-------------------~~~~~L~~Ldls~N~l~~~~p~~~~~~~l~-l~l~~n~~~ 299 (579)
++|+.|++++|++++ +|.. ..+++|++|++++|+++ .+|.....+.++ +++++|+++
T Consensus 410 ~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 410 EKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp TTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCC
T ss_pred ccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccC
Confidence 666666666665542 2211 13578888888888888 566532225555 888888876
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=288.84 Aligned_cols=288 Identities=18% Similarity=0.223 Sum_probs=235.8
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCC-CCccccCCCcCCcEEEe
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-RVPTELGNLTKLISLSF 80 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L 80 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.++ .+|.. .+++|++|+|++|.+++ .+|..|+.+++|++|++
T Consensus 46 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred cccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 6899999999999998999999999999999999999 67776 89999999999999987 57889999999999999
Q ss_pred ecccCCCCCchhhCCCCCC--cEEEeccCCC--CCCcchhhhCCC-----------------------------------
Q 008072 81 SSNNFFGPLPKELGKLTSL--QQLYIDSSGV--TGSIPQEFANLK----------------------------------- 121 (579)
Q Consensus 81 s~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~----------------------------------- 121 (579)
++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 123 ~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 123 STTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp EESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred cCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 9999875 346666777 8899988888 555555554422
Q ss_pred ------------------------------------------------CCcEEEccCCcCCCCCchhh-----cCccccc
Q 008072 122 ------------------------------------------------SLRILWASDNLFTGKIPEFF-----GTLTELA 148 (579)
Q Consensus 122 ------------------------------------------------~L~~L~L~~n~l~~~~p~~~-----~~l~~L~ 148 (579)
+|++|++++|++.+.+|..+ ..+++|+
T Consensus 200 n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp CCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred cccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence 67888888888888888877 7777777
Q ss_pred eeeecCCcCCCCch-hh-------------------------hhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEccc
Q 008072 149 DLRLQGTLLEGPIP-RS-------------------------FRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRN 202 (579)
Q Consensus 149 ~L~l~~n~l~~~~p-~~-------------------------~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~ 202 (579)
.++++.|.+ .+| .. ...+++|++|++++|.+....+..+..+++|+.|+|++
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 777777766 333 11 15778899999999988887778888899999999999
Q ss_pred CcCCC--CcchhhcCCCCCCEEeccCCcCCCCCchh-ccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCC
Q 008072 203 CRVSG--KIPDQLGTFAKLQLLDLSFNKLTGQIPTS-LQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGN 279 (579)
Q Consensus 203 n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~ 279 (579)
|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++++.+|... .++|+.||+++|+++ .
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK-S 435 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC-CTTCCEEECCSSCCC-C
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh-cccCCEEECCCCccc-c
Confidence 99986 46677889999999999999998766654 7788999999999999987777443 378999999999998 6
Q ss_pred CCccccc-CCce-EEeeccccc
Q 008072 280 LPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 280 ~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|..+.. +.++ +++++|.+.
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC
T ss_pred cchhhhcCCCCCEEECCCCcCC
Confidence 7766656 6665 899998886
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.9e-31 Score=287.34 Aligned_cols=276 Identities=21% Similarity=0.200 Sum_probs=196.5
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|+.+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 47788888888887777778888888888888888887777778888888888888888887666668888888888888
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcc-hhhhCCCCCcEEEccCCcCCCCCchhhcCcc--------------
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTLT-------------- 145 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-------------- 145 (579)
+|.+.+ ..|..++++++|++|++++|++.+.+| ..+..+++|++|++++|.+.+..|..+..++
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 888765 345667778888888888887544454 5677778888888888877766666655544
Q ss_pred ----------ccceeeecCCcCCCCc--h-----------------------------hhhhc-----------------
Q 008072 146 ----------ELADLRLQGTLLEGPI--P-----------------------------RSFRA----------------- 167 (579)
Q Consensus 146 ----------~L~~L~l~~n~l~~~~--p-----------------------------~~~~~----------------- 167 (579)
+|+.|++++|.+.+.. | ..+..
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence 4444445444444310 0 00001
Q ss_pred ------------------------------------------CCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcC
Q 008072 168 ------------------------------------------LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRV 205 (579)
Q Consensus 168 ------------------------------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 205 (579)
..+|++|++++|.+...+...+..+++|+.|+|++|.+
T Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc
Confidence 12233333333333323333335689999999999999
Q ss_pred CCCcch---hhcCCCCCCEEeccCCcCCCCCc--hhccCCCCCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCC
Q 008072 206 SGKIPD---QLGTFAKLQLLDLSFNKLTGQIP--TSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSG 278 (579)
Q Consensus 206 ~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~ 278 (579)
++.+|. .+..+++|++|++++|++++..+ ..+..+++|+.|+|++|+++ .+|... .+++|++|++++|++++
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence 977653 36788999999999999985432 45888999999999999999 677544 35788888888888763
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.1e-31 Score=290.11 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=93.4
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 36677777777777666677777777777777777776556667777777777777777776666667777777777777
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCC-CcchhhhCCCCCcEEEccCCcCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTG 135 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~ 135 (579)
+|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 777665444456667777777777777665 356666777777777776666543
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=7.7e-31 Score=293.28 Aligned_cols=298 Identities=19% Similarity=0.206 Sum_probs=244.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..+.++++|++|+|++|.+++..+..|+++++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 57899999999998888889999999999999999998889999999999999999999996555579999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhc--CccccceeeecCCcCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFG--TLTELADLRLQGTLLEG 159 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~ 159 (579)
+|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+.+
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 9999877778899999999999999999988888899999999999999999987777654 45899999999999988
Q ss_pred CchhhhhcC---------------------------CCCCeeEcCCCCCCCCChhhhcCCC--CCCEEEcccCcCCCCcc
Q 008072 160 PIPRSFRAL---------------------------NKLEDLRIGDLSAEDSTLDFLESQK--SLSILSLRNCRVSGKIP 210 (579)
Q Consensus 160 ~~p~~~~~l---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~~ 210 (579)
..|..+..+ ++|++|++++|.+....+..+..++ +|+.|+|++|.+++..+
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 777766655 4566666666666665556666554 48888888888887777
Q ss_pred hhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCC-----CCCc-----cccCCCCcEEEcccCCCCCCC
Q 008072 211 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG-----ELPV-----NIIAPNLIALDVSYNPLSGNL 280 (579)
Q Consensus 211 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~ip~-----~~~~~~L~~Ldls~N~l~~~~ 280 (579)
..+..+++|++|++++|.+++..|..+..+++|+.|++++|...+ .+|. ...+++|++|++++|++++..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 778888888888888888887777788888888888888776554 2331 113578888888888888877
Q ss_pred Cccccc-CCce-EEeeccccc
Q 008072 281 PRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 281 p~~~~~-~~l~-l~l~~n~~~ 299 (579)
|..+.. +.++ +++++|.+.
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSC
T ss_pred hhHhccccCCcEEECCCCchh
Confidence 766665 5555 777777643
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1e-30 Score=272.34 Aligned_cols=283 Identities=21% Similarity=0.195 Sum_probs=194.0
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+++.|+++++.+....+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.+++..|..|..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 57889999999876555557889999999999999997777789999999999999999998888889999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+....+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.+.. +..+++|+.|++++|.+.+
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~-- 200 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-- 200 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE--
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc--
Confidence 99998554455689999999999999999888888999999999999999988542 4556777777777776653
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
+...++|++|++++|.+..... ..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..++
T Consensus 201 ---~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 201 ---LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp ---EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ---cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 2233455556655555443321 1234555555555555532 2445555555555555555554455555555
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|+.|+|++|++++ +|... .+++|++|++++|++++ +|..+.. +.++ +++++|.+.
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccc
Confidence 55555555555553 22222 24555555555555552 3333333 3333 555555544
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.1e-30 Score=285.53 Aligned_cols=290 Identities=20% Similarity=0.223 Sum_probs=193.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCC-CCccccCCCcCCcEEEe
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-RVPTELGNLTKLISLSF 80 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L 80 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++
T Consensus 77 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 6899999999999988999999999999999999998 67766 89999999999999986 35689999999999999
Q ss_pred ecccCCCCCchhhCCCCCCcEEEeccCCC--CCCcchhhhCCC-------------------------------------
Q 008072 81 SSNNFFGPLPKELGKLTSLQQLYIDSSGV--TGSIPQEFANLK------------------------------------- 121 (579)
Q Consensus 81 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~------------------------------------- 121 (579)
++|.+.+.....+.++ +|++|++++|.+ .+..|..+..+.
T Consensus 154 ~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 154 SAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp ECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred CCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 9999876433333333 449999999988 655555544332
Q ss_pred --------------------------------------------CCcEEEccCCcCCCCCchhh-----cCccc------
Q 008072 122 --------------------------------------------SLRILWASDNLFTGKIPEFF-----GTLTE------ 146 (579)
Q Consensus 122 --------------------------------------------~L~~L~L~~n~l~~~~p~~~-----~~l~~------ 146 (579)
+|++|++++|.+.+.+|..+ ..++.
T Consensus 233 ~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp TTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred cccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 56666666666666666544 22222
Q ss_pred --------------------cceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCC
Q 008072 147 --------------------LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 206 (579)
Q Consensus 147 --------------------L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 206 (579)
|+.|++++|.+.... ....+++|++|++++|.+....+..+..+++|+.|+|++|.++
T Consensus 313 ~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp EECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred ccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 222222222221100 0145566666777666666655566666667777777777666
Q ss_pred C--CcchhhcCCCCCCEEeccCCcCCCCCch-hccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCcc
Q 008072 207 G--KIPDQLGTFAKLQLLDLSFNKLTGQIPT-SLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRN 283 (579)
Q Consensus 207 ~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~ 283 (579)
+ .+|..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChh
Confidence 4 2334566666777777777766653443 355666667777777766655553322 56666666666666 45544
Q ss_pred ccc-CCce-EEeeccccc
Q 008072 284 FAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 284 ~~~-~~l~-l~l~~n~~~ 299 (579)
+.. +.++ +++++|.++
T Consensus 469 ~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 469 VTHLQALQELNVASNQLK 486 (562)
T ss_dssp TTSSCCCSEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCCCC
Confidence 444 4444 666666664
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=288.75 Aligned_cols=296 Identities=19% Similarity=0.178 Sum_probs=230.6
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..++.+++|++|+++
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 132 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence 58889999999888777888899999999999999887777888889999999999998886555578888999999999
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhC-----------------------------------------
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFAN----------------------------------------- 119 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~----------------------------------------- 119 (579)
+|.+.+ .+|..++++++|++|++++|++.+..+..++.
T Consensus 133 ~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred CCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccc
Confidence 988876 46888888888888888888776543333322
Q ss_pred --------------------------------------------------------------------CCCCcEEEccCC
Q 008072 120 --------------------------------------------------------------------LKSLRILWASDN 131 (579)
Q Consensus 120 --------------------------------------------------------------------l~~L~~L~L~~n 131 (579)
+++|+.|++++|
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 233444444444
Q ss_pred cCCCCCchhh------------------------------------------cCccccceeeecCCcCCCCc--hhhhhc
Q 008072 132 LFTGKIPEFF------------------------------------------GTLTELADLRLQGTLLEGPI--PRSFRA 167 (579)
Q Consensus 132 ~l~~~~p~~~------------------------------------------~~l~~L~~L~l~~n~l~~~~--p~~~~~ 167 (579)
.+. .+|..+ ..+++|+.|++++|.+.+.. |..+..
T Consensus 293 ~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 371 (570)
T 2z63_A 293 TIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371 (570)
T ss_dssp EEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHT
T ss_pred cch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccc
Confidence 333 122111 34567888888888887543 778899
Q ss_pred CCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcc-hhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEE
Q 008072 168 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYL 246 (579)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 246 (579)
+++|++|++++|.+...... +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 99999999999887665544 7788999999999999887655 467888999999999999988888888889999999
Q ss_pred EecCccCC-CCCCcccc-CCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 247 YLGNNNLS-GELPVNII-APNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 247 ~L~~N~l~-~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|++|+++ +.+|..+. +++|++|++++|++++..|..+.. +.++ +++++|.+.
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 99999887 46775443 688999999999999888877766 6666 888888876
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.4e-30 Score=261.39 Aligned_cols=249 Identities=22% Similarity=0.304 Sum_probs=140.2
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
+++.++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4556666665555 3444332 355666666666654444455666666666666666655555556666666666666
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC--CchhhhhcCCCCCeeEcCCCCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG--PIPRSFRALNKLEDLRIGDLSAED 183 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~~~~~~ 183 (579)
+|++. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66655 3343332 456666666666655555555566666666666665532 444555566666666666655544
Q ss_pred CChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc-c
Q 008072 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-I 262 (579)
Q Consensus 184 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~-~ 262 (579)
..... .++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|+++ .+|..+ .
T Consensus 186 l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 32221 155666666666666555555666666666666666666555545556666666666666665 444333 2
Q ss_pred CCCCcEEEcccCCCCCCCCccc
Q 008072 263 APNLIALDVSYNPLSGNLPRNF 284 (579)
Q Consensus 263 ~~~L~~Ldls~N~l~~~~p~~~ 284 (579)
+++|++|++++|++++..+..+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSS
T ss_pred CCCcCEEECCCCcCCccChhhc
Confidence 4566666666666665444333
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.6e-30 Score=290.75 Aligned_cols=296 Identities=22% Similarity=0.241 Sum_probs=203.3
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCC-----CCcc----ccCCCc
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG-----RVPT----ELGNLT 73 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~----~~~~l~ 73 (579)
|++|+|++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|++++|...+ .+|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6777777777777777777777777777777777776666666666666666665543322 1222 455666
Q ss_pred CCcEEEeecccCCCCCchhhCCCCCCcEEEe----------------------------ccCCCCCCcchhhhCCCCCcE
Q 008072 74 KLISLSFSSNNFFGPLPKELGKLTSLQQLYI----------------------------DSSGVTGSIPQEFANLKSLRI 125 (579)
Q Consensus 74 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L----------------------------~~n~l~~~~~~~l~~l~~L~~ 125 (579)
+|++|++++|.+.+..+..+..+++|++|++ ++|++.+..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 7777777777776666655665555555555 445555555677888899999
Q ss_pred EEccCCcCCCCCc-hhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCC--CChhhhcCCCCCCEEEccc
Q 008072 126 LWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED--STLDFLESQKSLSILSLRN 202 (579)
Q Consensus 126 L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~Ls~ 202 (579)
|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++.+|.+.. ..+..+..+++|+.|+|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 9999998876555 577888888888888888877777777778888888887776652 3455667777888888888
Q ss_pred CcCCCCcchhhcCCCCCCEEeccCCcCCCCCc--------hhccCCCCCcEEEecCccCCCCCCccc--cCCCCcEEEcc
Q 008072 203 CRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIP--------TSLQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVS 272 (579)
Q Consensus 203 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~L~~N~l~~~ip~~~--~~~~L~~Ldls 272 (579)
|.+++..+..+..+++|++|++++|++++..+ ..+..+++|+.|+|++|+++ .+|... .+++|+.||++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECC
Confidence 88776666667777788888888887764311 23567777788888888777 555432 35777788888
Q ss_pred cCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 273 YNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 273 ~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|++++..+..+.. +.++ +++++|.++
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 88777555544444 5554 777777765
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=293.95 Aligned_cols=295 Identities=20% Similarity=0.209 Sum_probs=251.7
Q ss_pred CeeEEEEeCccccccc-chhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccc--cCCCcCCcEE
Q 008072 2 PHGHLKMRILVLLVTL-PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTE--LGNLTKLISL 78 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L 78 (579)
+|++|+|++|...+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|.. |..+++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 6899999999888777 778999999999999999999888999999999999999999999877665 8999999999
Q ss_pred EeecccCCCCCc-hhhCCCCCCcEEEeccCCCCCCcchhhhCC--CCCcEEEccCCcCCCCCchhhcCccc------cce
Q 008072 79 SFSSNNFFGPLP-KELGKLTSLQQLYIDSSGVTGSIPQEFANL--KSLRILWASDNLFTGKIPEFFGTLTE------LAD 149 (579)
Q Consensus 79 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~~ 149 (579)
+|++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..+.+ |+.
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 999999987655 579999999999999999999889888877 89999999999999888877766665 999
Q ss_pred eeecCCcCCCCchhhhhc--------------------------------------CCCCCeeEcCCCCCCCCChhhhcC
Q 008072 150 LRLQGTLLEGPIPRSFRA--------------------------------------LNKLEDLRIGDLSAEDSTLDFLES 191 (579)
Q Consensus 150 L~l~~n~l~~~~p~~~~~--------------------------------------l~~L~~L~l~~~~~~~~~~~~l~~ 191 (579)
|++++|.+.+.++..+.. .++|+.|++++|.+....+..+..
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc
Confidence 999999877665544432 267899999999888777788889
Q ss_pred CCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc-CCCCcEEE
Q 008072 192 QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALD 270 (579)
Q Consensus 192 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ld 270 (579)
+++|+.|+|++|.+++..+..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|++.+..+..+. +++|+.|+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 99999999999999988888899999999999999999988888999999999999999999865554333 68999999
Q ss_pred cccCCCCCCCCcccccCCceEEeeccccc
Q 008072 271 VSYNPLSGNLPRNFAKGGLSMNVIGSSIN 299 (579)
Q Consensus 271 ls~N~l~~~~p~~~~~~~l~l~l~~n~~~ 299 (579)
+++|.+++. +. ....-.+++++|.+.
T Consensus 369 Ls~N~l~~i-~~--~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 369 LRDNALTTI-HF--IPSIPDIFLSGNKLV 394 (844)
T ss_dssp EETCCSCCC-SS--CCSCSEEEEESCCCC
T ss_pred CCCCCCCcc-cC--CCCcchhccCCCCcc
Confidence 999998853 21 112234777887775
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-30 Score=263.70 Aligned_cols=248 Identities=26% Similarity=0.324 Sum_probs=141.0
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
+++.++++++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666655 4454332 456666666666655445556666666666666666655555556666666666666
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCC--CCchhhhhcCCCCCeeEcCCCCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE--GPIPRSFRALNKLEDLRIGDLSAED 183 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l~~~~~~~ 183 (579)
+|++. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+ +|++|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 66665 3443332 56666666666666544445566666666666666654 2444455555 66666666665554
Q ss_pred CChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc-c
Q 008072 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-I 262 (579)
Q Consensus 184 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~-~ 262 (579)
..... .++|+.|+|++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|+++ .+|..+ .
T Consensus 187 l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 33221 145666666666666555555666666666666666666555555666666666666666665 444433 2
Q ss_pred CCCCcEEEcccCCCCCCCCccc
Q 008072 263 APNLIALDVSYNPLSGNLPRNF 284 (579)
Q Consensus 263 ~~~L~~Ldls~N~l~~~~p~~~ 284 (579)
+++|+.|++++|++++..+..+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCCEEECCCCCCCccChhHc
Confidence 4566666666666665444333
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-30 Score=283.67 Aligned_cols=283 Identities=21% Similarity=0.198 Sum_probs=198.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+++.|+++++.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 46789999998887666667889999999999999998778889999999999999999998888888999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|.+.+
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE--
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc--
Confidence 99998665566789999999999999999888888999999999999999998643 4556777788887777663
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
+....+|+.|++++|.+...... ..++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..+..++
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ---ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 23334566666666554433221 12455555555555553 23455555555555555555555555555555
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|+.|+|++|++++ +|... .+++|+.|+|++|+++ .+|..+.. +.|+ +++++|.+.
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 55555555555553 23222 2455555555555555 34433333 3333 555555554
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.8e-30 Score=284.74 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=120.9
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
++++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 57899999999998888889999999999999999997777789999999999999999997667789999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCC-CcchhhhCCCCCcEEEccCCcCCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTG-SIPQEFANLKSLRILWASDNLFTGK 136 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 136 (579)
+|++.+..+..++++++|++|++++|.+.+ ..|..+..+++|++|++++|++.+.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999987777779999999999999999975 4678889999999999999987643
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=257.46 Aligned_cols=286 Identities=22% Similarity=0.250 Sum_probs=241.4
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+++.++++++.+. .+|..+. ++|++|+|++|.+++..+..+..+++|++|+|++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4678888888876 4666543 689999999999998777789999999999999999998889999999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCC--CCchhhcCccccceeeecCCcCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG--KIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
+|.+. .+|..+. ++|++|++++|++.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99987 5665554 799999999999998888889999999999999999964 667788999999999999999984
Q ss_pred CchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccC
Q 008072 160 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 239 (579)
Q Consensus 160 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 239 (579)
+|..+. ++|++|++++|.+....+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 554443 89999999999998888888999999999999999999777778999999999999999999 78888999
Q ss_pred CCCCcEEEecCccCCCCCCccc-------cCCCCcEEEcccCCCCC--CCCccccc-CCce-EEeeccc
Q 008072 240 LSTLQYLYLGNNNLSGELPVNI-------IAPNLIALDVSYNPLSG--NLPRNFAK-GGLS-MNVIGSS 297 (579)
Q Consensus 240 l~~L~~L~L~~N~l~~~ip~~~-------~~~~L~~Ldls~N~l~~--~~p~~~~~-~~l~-l~l~~n~ 297 (579)
+++|+.|++++|++++..+..+ ..+.++.|++++|++.. ..|..+.+ ..++ +++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999995443322 13678999999999864 34455555 5555 7887773
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.3e-29 Score=255.82 Aligned_cols=278 Identities=22% Similarity=0.299 Sum_probs=236.3
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+++++.+.. +| .+..+++|++|++++|.+++ ++. +..+++|++|+|++|.++. ++ .+..+++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECc
Confidence 57899999999864 44 48899999999999999985 444 8999999999999999984 44 69999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..
T Consensus 119 ~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 119 EDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred CCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence 9998754 43 8899999999999997665544 48999999999999999985544 788999999999999998654
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
+ +..+++|+.|++++|.+..... +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..++
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 4 8899999999999998776544 7889999999999999985444 88899999999999999853 4688999
Q ss_pred CCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 242 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|+.|++++|++++ ++....+++|+.|++++|++++..|..+.. +.++ +++++|++.
T Consensus 266 ~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 266 KLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp TCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 99999999999985 454455799999999999999888877766 6665 899999886
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-28 Score=252.56 Aligned_cols=276 Identities=27% Similarity=0.359 Sum_probs=144.2
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|++++|.+.+. |+ +..+++|++|++++|.+++ ++ .+..+++|++|+|++|.+++ ++. +..+++|++|+++
T Consensus 67 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 67 NLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLG 140 (347)
T ss_dssp TCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECT
T ss_pred CccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECC
Confidence 355566666555432 22 5555666666666665553 22 35555566666666665553 222 5555566666666
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..
T Consensus 141 ~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 141 ANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp TCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc
Confidence 554433332 25555566666666655553322 5555566666666665553222 455555666666665555433
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
+ +..+++|++|++++|.+..... +..+++|+.|++++|.+++ + ..+..+++|++|++++|++++. + .+..++
T Consensus 216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~ 287 (347)
T 4fmz_A 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-S-VLNNLS 287 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-G-GGGGCT
T ss_pred h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-h-hhcCCC
Confidence 3 5555566666666555544332 5555566666666665553 2 2345555666666666655532 2 355555
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccc
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSI 298 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~ 298 (579)
+|+.|++++|++++..|..+ .+++|+.|++++|++++..| +.. +.++ +++++|.+
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 66666666665554444322 24556666666666555444 222 3332 55555544
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-29 Score=257.31 Aligned_cols=285 Identities=23% Similarity=0.274 Sum_probs=242.0
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
.++.++++++++. .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3678899999876 6777653 789999999999997778889999999999999999998889999999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCC--CCCchhhcCccccceeeecCCcCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFT--GKIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
+|.+. .+|..+. ++|++|++++|++.+..+..+..+++|+.|++++|.+. +..+..+..+ +|+.|++++|.+.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99987 5666554 89999999999999777778999999999999999996 3667777777 99999999999985
Q ss_pred CchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccC
Q 008072 160 PIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQD 239 (579)
Q Consensus 160 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 239 (579)
+|..+. ++|++|++++|.+....+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 79999999999999888888999999999999999999877778999999999999999999 78888999
Q ss_pred CCCCcEEEecCccCCCCCCcccc-------CCCCcEEEcccCCCC--CCCCccccc-CCce-EEeeccc
Q 008072 240 LSTLQYLYLGNNNLSGELPVNII-------APNLIALDVSYNPLS--GNLPRNFAK-GGLS-MNVIGSS 297 (579)
Q Consensus 240 l~~L~~L~L~~N~l~~~ip~~~~-------~~~L~~Ldls~N~l~--~~~p~~~~~-~~l~-l~l~~n~ 297 (579)
+++|+.|++++|++++..+..+. .++|+.|++++|+++ +..|..+.. +.++ +++++|.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999999999954433221 367899999999988 556656655 6665 7777663
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.6e-29 Score=277.88 Aligned_cols=283 Identities=19% Similarity=0.146 Sum_probs=245.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|+|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 58999999999999888899999999999999999998888889999999999999999996666667999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+..|..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.+ +...++|+.|++++|.+....
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEE
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccc
Confidence 9999988888999999999999999999864 25678999999999998874 345678999999999987433
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
+ .+ .++|+.|++++|.+... ..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..++
T Consensus 228 ~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 228 G-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp C-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred c-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 2 22 36899999999988763 678899999999999999998889999999999999999999985 677778899
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCcccccCCce-EEeecccccCC
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSINAN 301 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~~~l~-l~l~~n~~~~~ 301 (579)
+|+.|+|++|+++ .+|..+ .+++|+.|+|++|++++..+. .. +.++ +++++|++.+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS-TH-HTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCC-TT-CCCSEEECCSSCEEHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChh-hc-CCCCEEEeeCCCCCCh
Confidence 9999999999999 566544 479999999999999865322 22 4444 89999998753
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.3e-29 Score=260.15 Aligned_cols=281 Identities=19% Similarity=0.155 Sum_probs=242.6
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+..+++|++|+|++|.++...+..|..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 58999999999998888899999999999999999998888889999999999999999995444557999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+.+ +...++|+.|++++|.+...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~- 220 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV- 220 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-
Confidence 9999988888899999999999999999854 36678999999999998873 34457899999999998754
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
|. ...++|+.|++++|.+... ..+..+++|+.|+|++|.+++..|..+..+++|++|+|++|++++ +|..+..++
T Consensus 221 ~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 221 RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence 33 2357999999999988764 678899999999999999998889999999999999999999984 666778899
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccC
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 300 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~ 300 (579)
+|+.|+|++|+++ .+|... .+++|+.|++++|+++.. | +.. +.++ +++++|++.+
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 9999999999998 455443 479999999999999865 3 222 4444 8999999975
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.6e-28 Score=261.98 Aligned_cols=277 Identities=29% Similarity=0.352 Sum_probs=218.1
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..| +.++++|++|++++|.+++..+ +..+++|++|+|++|.+++. +. +..+++|++|+++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECC
Confidence 57889999998876544 8888899999999988885444 88888888888888888854 33 7888888888888
Q ss_pred cccCCCCCc-------------------hhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhc
Q 008072 82 SNNFFGPLP-------------------KELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFG 142 (579)
Q Consensus 82 ~n~l~~~~p-------------------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 142 (579)
+|.+.+... ..+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..| ++
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LG 218 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--cc
Confidence 887764211 1266788899999999998853 348889999999999999987655 67
Q ss_pred CccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEE
Q 008072 143 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLL 222 (579)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 222 (579)
.+++|+.|++++|.+.+. ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 789999999999988754 357888999999999988766543 7788899999999998885444 7788899999
Q ss_pred eccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 223 DLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 223 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
++++|++++..+ +..+++|+.|+|++|++++..| ...+++|+.|++++|++++. + .+.. +.++ +++++|.+.
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-S-SLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc-h-hhccCCCCCEEeCCCCccC
Confidence 999998886544 7788889999999998887655 44578888899988888875 3 4444 5555 788888775
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=4.3e-28 Score=258.66 Aligned_cols=278 Identities=25% Similarity=0.322 Sum_probs=236.0
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|+.|++.++.+.. +|. +..+++|++|+|++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 47899999998874 554 88899999999999999964 44 8999999999999999996544 9999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcc-------------------hhhhCCCCCcEEEccCCcCCCCCchhhc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-------------------QEFANLKSLRILWASDNLFTGKIPEFFG 142 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-------------------~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 142 (579)
+|.+.+. +. +.++++|++|++++|.+.+... ..+..+++|+.|++++|.+.+. ..+.
T Consensus 121 ~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~ 196 (466)
T 1o6v_A 121 NNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLA 196 (466)
T ss_dssp SSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred CCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhc
Confidence 9999865 33 8899999999999998775311 2366788999999999998853 3488
Q ss_pred CccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEE
Q 008072 143 TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLL 222 (579)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 222 (579)
.+++|+.|++++|.+.+..| +..+++|++|++++|.+... +.+..+++|+.|++++|.+++..+ +..+++|++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 89999999999999997766 78899999999999988764 567889999999999999986655 7889999999
Q ss_pred eccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeecccccC
Q 008072 223 DLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSINA 300 (579)
Q Consensus 223 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~~ 300 (579)
++++|.+++..+ +..+++|+.|++++|++++..| ...+++|+.|++++|++++..| +.. +.++ +++++|.+..
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 999999996544 8899999999999999996544 4467999999999999998776 333 5555 8999998864
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.2e-28 Score=248.45 Aligned_cols=224 Identities=20% Similarity=0.302 Sum_probs=144.1
Q ss_pred CCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEE
Q 008072 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 103 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 103 (579)
.++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888877 67777777888888888888887 77777788888888888888777 6677777888888888
Q ss_pred eccCCCCCCcchhhhC---------CCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCee
Q 008072 104 IDSSGVTGSIPQEFAN---------LKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDL 174 (579)
Q Consensus 104 L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 174 (579)
+++|++.+.+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 8887777777766543 666666666666666 556666666666666666666663 33345555555555
Q ss_pred EcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCcc
Q 008072 175 RIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 252 (579)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 252 (579)
++++|.+....+..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 555554444444444445555555555555444455445555555555555555555555555555555555444443
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.1e-28 Score=247.32 Aligned_cols=224 Identities=22% Similarity=0.339 Sum_probs=210.7
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
.++.|+|+++.+. .+|+.+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4789999999998 88999999999999999999999 89999999999999999999999 889999999999999999
Q ss_pred cccCCCCCchhhCC---------CCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeee
Q 008072 82 SNNFFGPLPKELGK---------LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRL 152 (579)
Q Consensus 82 ~n~l~~~~p~~l~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 152 (579)
+|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 99999999987764 999999999999999 889999999999999999999995 6677999999999999
Q ss_pred cCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCC
Q 008072 153 QGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 230 (579)
Q Consensus 153 ~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 230 (579)
++|.+.+.+|..+..+++|++|++++|......+..+..+++|+.|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999988888888999999999999999999999999999999999999877665
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5.8e-28 Score=256.25 Aligned_cols=272 Identities=19% Similarity=0.127 Sum_probs=210.3
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|++++|.+.+. | .+..+++|++|+|++|.+++ +| ++.+++|++|+|++|.+++. + ++.+++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 578899999988864 5 68889999999999999886 34 78889999999999998864 3 8889999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|++.+. | ++.+++|++|++++|++++. + +..+++|++|++++|...+.+ .+..+++|+.|++++|.+++ +
T Consensus 115 ~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 115 TNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 9988863 4 78889999999999998864 3 778889999999999766565 37788899999999998886 4
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
| +..+++|+.|++++|.+... .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+..+.
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 4 77888999999998888775 36778899999999999986 55 77888999999999999876544444433
Q ss_pred -------CCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCcccc--------c-CCce-EEeeccccc
Q 008072 242 -------TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFA--------K-GGLS-MNVIGSSIN 299 (579)
Q Consensus 242 -------~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~--------~-~~l~-l~l~~n~~~ 299 (579)
+|+.|++++|++.+.+| ...+++|+.|++++|++.+.+|.... . +.++ +++++|.++
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred EEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 44556666666666666 23468888888988887777664221 1 2333 667777665
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.9e-29 Score=254.99 Aligned_cols=272 Identities=22% Similarity=0.208 Sum_probs=180.6
Q ss_pred EEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccC
Q 008072 6 LKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNF 85 (579)
Q Consensus 6 L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 85 (579)
.+.+++++. .+|..+. ++|++|++++|.+++..+..+.++++|++|+|++|.+++..|..|..+++|++|++++|.+
T Consensus 36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 344555544 4555443 4677777777777755555677777777777777777766666677777777777777777
Q ss_pred CCCCchhhCCCCCCcEEEeccCCCCCCcc-hhhhCCCCCcEEEccCCc-CCCCCchhhcCccccceeeecCCcCCCCchh
Q 008072 86 FGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNL-FTGKIPEFFGTLTELADLRLQGTLLEGPIPR 163 (579)
Q Consensus 86 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 163 (579)
.+..+..+.++++|++|++++|++....+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 65444447777777777777777774332 356777777777777773 5544456677777777777777777766677
Q ss_pred hhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhh---cCCCCCCEEeccCCcCCC----CCchh
Q 008072 164 SFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQL---GTFAKLQLLDLSFNKLTG----QIPTS 236 (579)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~p~~ 236 (579)
.+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+++ .+|..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 77777777777777776655444445556777777777777765443332 234567777777777664 25566
Q ss_pred ccCCCCCcEEEecCccCCCCCCccc--cCCCCcEEEcccCCCCCCCC
Q 008072 237 LQDLSTLQYLYLGNNNLSGELPVNI--IAPNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 237 l~~l~~L~~L~L~~N~l~~~ip~~~--~~~~L~~Ldls~N~l~~~~p 281 (579)
+..+++|+.|+|++|+++ .+|... .+++|++|++++|++++..|
T Consensus 273 l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 677777777777777777 555443 35777777777777776544
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.7e-29 Score=250.94 Aligned_cols=247 Identities=23% Similarity=0.265 Sum_probs=140.5
Q ss_pred EEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCC--CchhhCCCCCCcEEEecc
Q 008072 29 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGP--LPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 29 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~ 106 (579)
.++.+++.++ .+|..+. ++|++|+|++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455555444 3443222 3455555555555532222345555555555555554421 133444455555555555
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCCc-hhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCC-C
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED-S 184 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~-~ 184 (579)
|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.. .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 5554 344445555555555555555553332 345555555555555555555555555555666666665555443 2
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc-C
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-A 263 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~ 263 (579)
.+..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++++..|..+. +
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 334455666777777777777665566677777777777777777766555667777777777777777766664443 3
Q ss_pred -CCCcEEEcccCCCCCC
Q 008072 264 -PNLIALDVSYNPLSGN 279 (579)
Q Consensus 264 -~~L~~Ldls~N~l~~~ 279 (579)
++|+.|++++|++++.
T Consensus 247 ~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTCCEECS
T ss_pred hccCCEEEccCCCeecc
Confidence 4777777777777654
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.8e-27 Score=250.94 Aligned_cols=270 Identities=15% Similarity=0.105 Sum_probs=227.2
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+. | +..+++|++|++++|.+++. + ++.+++|++|+|++|++++ +| ++.+++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 589999999999874 4 88999999999999999964 4 8899999999999999996 44 8999999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|++.+. + ++.+++|++|++++|+..+.+ .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+.+.
T Consensus 136 ~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 136 RNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp TSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-
T ss_pred CCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-
Confidence 9999874 3 789999999999999766666 47889999999999999996 45 78899999999999999875
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCC-------CCCEEeccCCcCCCCCc
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA-------KLQLLDLSFNKLTGQIP 234 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~p 234 (579)
.+..+++|+.|++++|.+...+ +..+++|+.|++++|.+++..+..+..+. +|+.|++++|.+.+.+|
T Consensus 207 --~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred --ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 3888999999999999988853 77899999999999999976554444443 55666777777666666
Q ss_pred hhccCCCCCcEEEecCccCCCCCCccc---------cCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 235 TSLQDLSTLQYLYLGNNNLSGELPVNI---------IAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 235 ~~l~~l~~L~~L~L~~N~l~~~ip~~~---------~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+..+++|+.|++++|++.+.+|... ..++|++|++++|++++. + +.. +.++ +++++|.++
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 5678999999999999888777421 247899999999999984 4 444 5565 899999886
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.6e-28 Score=250.67 Aligned_cols=256 Identities=20% Similarity=0.212 Sum_probs=221.3
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|++++|.+.+..+..|.++++|++|+|++|.+++..|..+.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 58999999999998777789999999999999999998778889999999999999999996555568999999999999
Q ss_pred cccCCCCCc-hhhCCCCCCcEEEeccCC-CCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC
Q 008072 82 SNNFFGPLP-KELGKLTSLQQLYIDSSG-VTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 82 ~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
+|++....+ ..+.++++|++|++++|+ +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999985433 478899999999999995 665567789999999999999999998889999999999999999999864
Q ss_pred CchhhhhcCCCCCeeEcCCCCCCCCChhhh---cCCCCCCEEEcccCcCCC----CcchhhcCCCCCCEEeccCCcCCCC
Q 008072 160 PIPRSFRALNKLEDLRIGDLSAEDSTLDFL---ESQKSLSILSLRNCRVSG----KIPDQLGTFAKLQLLDLSFNKLTGQ 232 (579)
Q Consensus 160 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (579)
..+..+..+++|++|++++|.+.......+ .....++.++|+++.+++ .+|..+..+++|++|++++|+++ .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 444456679999999999999887654333 356789999999999876 36778899999999999999999 5
Q ss_pred Cchh-ccCCCCCcEEEecCccCCCCCC
Q 008072 233 IPTS-LQDLSTLQYLYLGNNNLSGELP 258 (579)
Q Consensus 233 ~p~~-l~~l~~L~~L~L~~N~l~~~ip 258 (579)
+|.. +..+++|+.|+|++|++.+..|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5555 6899999999999999997655
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.8e-29 Score=252.32 Aligned_cols=249 Identities=20% Similarity=0.194 Sum_probs=193.0
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCC-CCCccccC-------CCcCCcEEEeecccCCCCCchh
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFT-GRVPTELG-------NLTKLISLSFSSNNFFGPLPKE 92 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~ 92 (579)
++..++|+.|++++|.+ .+|..+... |++|+|++|.+. ..+|..+. ++++|++|++++|.+.+.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34566788889999988 677766654 888899998884 45666555 6889999999999998888887
Q ss_pred h--CCCCCCcEEEeccCCCCCCcchhhhCC-----CCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCC--chh
Q 008072 93 L--GKLTSLQQLYIDSSGVTGSIPQEFANL-----KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP--IPR 163 (579)
Q Consensus 93 l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~ 163 (579)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..++.+++|++|++++|.+.+. .|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8899999999999999876 7777776 8999999999999887778888999999999999988765 344
Q ss_pred hh--hcCCCCCeeEcCCCCCCCC---ChhhhcCCCCCCEEEcccCcCCCCcc-hhhcCCCCCCEEeccCCcCCCCCchhc
Q 008072 164 SF--RALNKLEDLRIGDLSAEDS---TLDFLESQKSLSILSLRNCRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSL 237 (579)
Q Consensus 164 ~~--~~l~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l 237 (579)
.+ ..+++|++|++++|.+... ....+..+++|+.|+|++|.+++..| ..+..+++|++|+|++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 7788888888888877633 22334567888888888888887664 34556788888888888887 666655
Q ss_pred cCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCC
Q 008072 238 QDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 278 (579)
Q Consensus 238 ~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~ 278 (579)
. ++|+.|+|++|++++. |....+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 5 7788888888888754 653346788888888888775
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.7e-28 Score=239.95 Aligned_cols=255 Identities=23% Similarity=0.220 Sum_probs=174.7
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccC
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 107 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 107 (579)
++++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 445433 346666777666666555556666666777777666666555666666667777777666
Q ss_pred C-CCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCCh
Q 008072 108 G-VTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL 186 (579)
Q Consensus 108 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 186 (579)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 554446666667777777777777666656666667777777777777665555566667777777777776665555
Q ss_pred hhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCC
Q 008072 187 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNL 266 (579)
Q Consensus 187 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L 266 (579)
..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++....+.......+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 56777788888888888888777778888888888888888888766667888888888888888887655533333445
Q ss_pred cEEEcccCCCCCCCCcccc
Q 008072 267 IALDVSYNPLSGNLPRNFA 285 (579)
Q Consensus 267 ~~Ldls~N~l~~~~p~~~~ 285 (579)
+.+..+.+.+....|..+.
T Consensus 251 ~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHCCSEECCCBEEESGGGT
T ss_pred HhcccccCccccCCchHhC
Confidence 5556667777776665543
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.7e-28 Score=239.51 Aligned_cols=255 Identities=21% Similarity=0.199 Sum_probs=219.8
Q ss_pred eEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecc
Q 008072 4 GHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 83 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 83 (579)
+.++.+++++. .+|..+ .++|++|+|++|.+++..+..+..+++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46777777776 456543 478999999999999777788999999999999999999887899999999999999999
Q ss_pred c-CCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 84 N-FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 84 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
. +....|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776668889999999999999999998888999999999999999999997777789999999999999999997667
Q ss_pred hhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCC
Q 008072 163 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 242 (579)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 242 (579)
..+..+++|++|++++|.+....+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++....+.. .-...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 78999999999999999998888888999999999999999999777778999999999999999998654321 11123
Q ss_pred CcEEEecCccCCCCCCcccc
Q 008072 243 LQYLYLGNNNLSGELPVNII 262 (579)
Q Consensus 243 L~~L~L~~N~l~~~ip~~~~ 262 (579)
++.+..+.+.+....|....
T Consensus 250 l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHCCSEECCCBEEESGGGT
T ss_pred HHhcccccCccccCCchHhC
Confidence 44555677888877886554
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=240.13 Aligned_cols=230 Identities=22% Similarity=0.243 Sum_probs=118.5
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCC--CCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEE
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 102 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 102 (579)
++|++|+|++|.++...+..+.++++|++|+|++|.++. ..+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 345555555555553222334555555555555555541 12334444555555555555544 234445555555555
Q ss_pred EeccCCCCCCcc-hhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC-CchhhhhcCCCCCeeEcCCCC
Q 008072 103 YIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG-PIPRSFRALNKLEDLRIGDLS 180 (579)
Q Consensus 103 ~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~~~ 180 (579)
++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 555555553332 345555555555555555554445555555555555555555543 344455555555555555555
Q ss_pred CCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC-CCcEEEecCccCCC
Q 008072 181 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS-TLQYLYLGNNNLSG 255 (579)
Q Consensus 181 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~ 255 (579)
+....+..+..+++|+.|+|++|.+++..+..+..+++|++|++++|++++..|..+..++ +|+.|+|++|++++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5544444455555555555555555544444455555555555555555555555555542 55555555555544
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=6.9e-27 Score=258.59 Aligned_cols=300 Identities=21% Similarity=0.186 Sum_probs=235.9
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|+++++|++|+++
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 68999999999998888889999999999999999997667789999999999999999997777789999999999999
Q ss_pred cccCCC-CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCC---------------------------------------
Q 008072 82 SNNFFG-PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLK--------------------------------------- 121 (579)
Q Consensus 82 ~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--------------------------------------- 121 (579)
+|.+.. ..|..+..+++|++|++++|++++..+..+..+.
T Consensus 157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred cCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 999875 4678889999999999999987654433322111
Q ss_pred --------------------------------------------------------------------------------
Q 008072 122 -------------------------------------------------------------------------------- 121 (579)
Q Consensus 122 -------------------------------------------------------------------------------- 121 (579)
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence
Q ss_pred ------------CCcEEEccCCcCCCCCc-------------------hhhcCccccceeeecCCcCCC-----------
Q 008072 122 ------------SLRILWASDNLFTGKIP-------------------EFFGTLTELADLRLQGTLLEG----------- 159 (579)
Q Consensus 122 ------------~L~~L~L~~n~l~~~~p-------------------~~~~~l~~L~~L~l~~n~l~~----------- 159 (579)
+|+.|++.+|.+....+ .....+++|+.|+++.|.+..
T Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh
Confidence 12222332222211000 001124455566665554421
Q ss_pred --------------------------------------C-chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEc
Q 008072 160 --------------------------------------P-IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSL 200 (579)
Q Consensus 160 --------------------------------------~-~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 200 (579)
. .+..+..+++++.++++.|.+.......+..++.|+.|+|
T Consensus 397 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 397 ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 1 1124556778888899999888888888899999999999
Q ss_pred ccCcCC-CCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCC
Q 008072 201 RNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSG 278 (579)
Q Consensus 201 s~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~ 278 (579)
++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. +++|++|||++|++++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 999854 34677899999999999999999988899999999999999999999976665443 6999999999999999
Q ss_pred CCCccccc--CCce-EEeecccccCC
Q 008072 279 NLPRNFAK--GGLS-MNVIGSSINAN 301 (579)
Q Consensus 279 ~~p~~~~~--~~l~-l~l~~n~~~~~ 301 (579)
..|..+.. +.++ +++++|+|.|+
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99987765 4565 89999999874
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.2e-27 Score=249.23 Aligned_cols=249 Identities=22% Similarity=0.213 Sum_probs=207.0
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
....++.++..++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..+..+.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567888888887 5676543 578999999999987778888889999999999998887777888889999999999
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchh-hhhcCCCCCeeEcCCCCCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPR-SFRALNKLEDLRIGDLSAEDS 184 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~~~~~~~ 184 (579)
+|+++...+..+..+++|++|+|++|.+....+..+..+++|+.|++++|...+.++. .+..+++|++|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9998876667788889999999999988866666788889999999988655545544 688889999999999887765
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc-cC
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IA 263 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~-~~ 263 (579)
+.+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+ .+
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 347788999999999999998888899999999999999999998888889999999999999999985444333 36
Q ss_pred CCCcEEEcccCCCCCC
Q 008072 264 PNLIALDVSYNPLSGN 279 (579)
Q Consensus 264 ~~L~~Ldls~N~l~~~ 279 (579)
++|+.|+|++|++...
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 8999999999987643
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-28 Score=249.28 Aligned_cols=243 Identities=23% Similarity=0.235 Sum_probs=208.1
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCC-CCCchhhc-------CCCCCcEEEeeccCCCCCCcccc--CCC
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLN-GSIPAEIG-------QLSNMQYLSLGINNFTGRVPTEL--GNL 72 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l 72 (579)
|+.|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. .+++|++|+|++|++++.+|..+ ..+
T Consensus 45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 55566777877 778877655 899999999984 56777665 79999999999999999899876 899
Q ss_pred cCCcEEEeecccCCCCCchhhCCC-----CCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCC--Cchhh--cC
Q 008072 73 TKLISLSFSSNNFFGPLPKELGKL-----TSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK--IPEFF--GT 143 (579)
Q Consensus 73 ~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~--~~ 143 (579)
++|++|++++|++.+. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 9999999999999877 8777776 9999999999999988889999999999999999998765 34444 78
Q ss_pred ccccceeeecCCcCCC--Cch-hhhhcCCCCCeeEcCCCCCCCCC-hhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCC
Q 008072 144 LTELADLRLQGTLLEG--PIP-RSFRALNKLEDLRIGDLSAEDST-LDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKL 219 (579)
Q Consensus 144 l~~L~~L~l~~n~l~~--~~p-~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 219 (579)
+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.... ...+..+++|+.|+|++|.++ .+|..+. ++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 9999999999999984 233 34568899999999999988765 355667899999999999999 7887766 899
Q ss_pred CEEeccCCcCCCCCchhccCCCCCcEEEecCccCCC
Q 008072 220 QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 255 (579)
Q Consensus 220 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 255 (579)
++|+|++|++++. |. +..+++|+.|+|++|++++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999966 65 8899999999999999985
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.5e-27 Score=247.64 Aligned_cols=248 Identities=20% Similarity=0.188 Sum_probs=208.4
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
..+.++.++..++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.+.+..+..+.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4668888888887 6776554 578999999999987777888999999999999999887777888889999999999
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchh-hhhcCCCCCeeEcCCCCCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPR-SFRALNKLEDLRIGDLSAEDS 184 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~~~~~~~ 184 (579)
+|+++...+..+..+++|++|+|++|.+....+..+..+++|+.|++++|...+.++. .+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9999876666788899999999999998866666788899999999998655545444 788899999999999987755
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc-cC
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IA 263 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~-~~ 263 (579)
. .+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+ .+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 47788999999999999998788889999999999999999998888889999999999999999995444333 36
Q ss_pred CCCcEEEcccCCCCC
Q 008072 264 PNLIALDVSYNPLSG 278 (579)
Q Consensus 264 ~~L~~Ldls~N~l~~ 278 (579)
++|+.|+|++|++..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 899999999998763
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.9e-27 Score=247.44 Aligned_cols=247 Identities=22% Similarity=0.255 Sum_probs=192.1
Q ss_pred CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 50 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
..+.++.++..++ .+|..+. ++|++|+|++|.+.+..+..+.++++|++|+|++|++.+..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567777777777 5666554 578888888888887777888888888888888888887777888888888888888
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCC-CCCCCChhhhcCCCCCCEEEcccCcCCCC
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL-SAEDSTLDFLESQKSLSILSLRNCRVSGK 208 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 208 (579)
+|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++| .+.......+..+++|+.|+|++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 88888666667888888888888888888666667888888888888874 3444455567788888888888888874
Q ss_pred cchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCCCCCccccc-
Q 008072 209 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSGNLPRNFAK- 286 (579)
Q Consensus 209 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~~~p~~~~~- 286 (579)
+| .+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..+. +++|+.|+|++|++++..+..+..
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 367788888888888888877788888888888888888888866664443 688888888888888666655555
Q ss_pred CCce-EEeecccccCC
Q 008072 287 GGLS-MNVIGSSINAN 301 (579)
Q Consensus 287 ~~l~-l~l~~n~~~~~ 301 (579)
+.++ +++++|++.|+
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 5554 78888888764
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=244.78 Aligned_cols=247 Identities=23% Similarity=0.254 Sum_probs=204.0
Q ss_pred CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 50 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
..+.++.++..++ .+|..+. ++++.|+|++|++.+..+..+.++++|++|+|++|++.+..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4667888888887 6777654 688999999999887777888999999999999999987777889999999999999
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCC-CCCCChhhhcCCCCCCEEEcccCcCCCC
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS-AEDSTLDFLESQKSLSILSLRNCRVSGK 208 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 208 (579)
+|+++...+..+..+++|++|++++|.+....+..+..+++|++|+++++. +.......+.++++|+.|+|++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999987666678889999999999999887667788899999999998854 44445567888899999999999988 5
Q ss_pred cchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCccccc-
Q 008072 209 IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFAK- 286 (579)
Q Consensus 209 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~~- 286 (579)
+|. +..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+ .+++|+.|||++|++++..+..+..
T Consensus 200 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred ccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 553 7788899999999999988888889999999999999999986666444 3688999999999999776666655
Q ss_pred CCce-EEeecccccCC
Q 008072 287 GGLS-MNVIGSSINAN 301 (579)
Q Consensus 287 ~~l~-l~l~~n~~~~~ 301 (579)
+.++ +++++|++.|+
T Consensus 279 ~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEcCCCCccCC
Confidence 5565 89999998764
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.1e-28 Score=247.50 Aligned_cols=265 Identities=17% Similarity=0.108 Sum_probs=190.9
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
++.++++.+++...++..+..+++|++|+|++|.+++..|..+..+++|++|+|++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555666655555556667889999999999998888889999999999999999986544 88999999999999
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
|.+.+. ...++|++|++++|++.+..+. .+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Cccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 988642 2348899999999998865443 36789999999999987777778888899999999998887666
Q ss_pred hhh-hcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 163 RSF-RALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 163 ~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
..+ ..+++|++|++++|.+... +....+++|+.|+|++|.+++ +|..+..+++|++|++++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 655 3677788888877766554 222346677777777777763 4444666777777777777776 4566666677
Q ss_pred CCcEEEecCccCC-CCCCccc-cCCCCcEEEcccCC-CCCCCC
Q 008072 242 TLQYLYLGNNNLS-GELPVNI-IAPNLIALDVSYNP-LSGNLP 281 (579)
Q Consensus 242 ~L~~L~L~~N~l~-~~ip~~~-~~~~L~~Ldls~N~-l~~~~p 281 (579)
+|+.|++++|++. +.+|... .+++|+.|++++|+ ++|..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 7777777777766 3333222 24566666666333 444443
No 60
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.94 E-value=1.6e-27 Score=217.55 Aligned_cols=159 Identities=25% Similarity=0.385 Sum_probs=116.0
Q ss_pred ccccccCCcccccCCCceeecCCCCc--ccceEEeeCCCeeEEcccccccCCCCCCcccccccccccCCCCHHhHhhhcc
Q 008072 329 SFSIKCGGTQIASASGIEFDDDSKTL--EAASFYTSSGNRWAVSNTGNFISNPNGPLYIAQTDSQITGTLDSELYKTARI 406 (579)
Q Consensus 329 ~~~~nCgg~~~~~~~~~~~~~d~~~~--g~~~~~~~~~~~W~~s~~g~~~~~~~~~~~~~~s~~~~~~~~p~~ly~t~r~ 406 (579)
.+++||||+..++..++.|++|.... |.+..+ . .. .. + ...++.|+++|+|||+
T Consensus 7 ~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~~-------~----------~~-~~-~-----~~~~~~~~~lY~TaR~ 62 (174)
T 2jwp_A 7 IWAVNAGGESHVDVHGIHYRKDPLEGRVGRASDY-------G----------MK-LP-I-----LRSNPEDQVLYQTERY 62 (174)
T ss_dssp EEEEEETSSSEEETTTEEECSSCSSTTCCCCCCC-------C----------TT-SC-C-----SSSCHHHHHTTTCCCC
T ss_pred EEEEECCCCCccCCCCCEEcCCcCcccCCccccc-------c----------cc-eE-e-----cccCCCCchhhhhhcc
Confidence 47899999987666688999996432 211100 0 00 00 0 1123568899999999
Q ss_pred cCCCcccccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEEEEEecCC
Q 008072 407 SPSSLRYYGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNT 485 (579)
Q Consensus 407 ~~~~l~~~~~~~~-~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~ 485 (579)
++.+++ |.|+++ +|+|+|||||||+. +.+.++|+|||||||++++++|||.+++|+ .+|++|+|.++|+++
T Consensus 63 ~~~~~t-Y~f~v~~~G~Y~VrLhF~ei~------~~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~ 134 (174)
T 2jwp_A 63 NEDSFG-YDIPIKEEGEYVLVLKFAEVY------FAQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKG 134 (174)
T ss_dssp CCSCEE-EEEECCSCEEEEEEEEEECCS------CCCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETT
T ss_pred CCCCeE-EEEEeCCCeEEEEEEEEeccc------cCCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecC
Confidence 999999 889987 58999999999998 556899999999999999999999999986 789999999987655
Q ss_pred eEEEEEEec-CCCCccccC-CC-ccCceeeeEEEEec
Q 008072 486 IIEIHFFWA-GKGTCCIPF-QG-TYGPLVSAIHASQV 519 (579)
Q Consensus 486 ~l~i~~~~~-~~g~~~~~~-~~-~~~~~ln~iei~~~ 519 (579)
.+.++..|. +.|...+.. ++ .++|+||||||+|-
T Consensus 135 ~l~i~~~~~~~~g~L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 135 KLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEETTEEEECCSEEEEEEECSSSCSSSEEEEEEESS
T ss_pred ceeeeeeecccCCeEEEEEeccCCCCcEEEEEEEEeC
Confidence 544443332 233222221 22 46799999999984
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=3.7e-25 Score=234.47 Aligned_cols=239 Identities=24% Similarity=0.336 Sum_probs=128.8
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEe
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 104 (579)
++|++|++++|.+++ ++.. .++|++|++++|++++ +| .|+.+++|++|++++|++.+ +|.. ..+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEEC
Confidence 444555555554442 2210 1456666666666663 45 36666666666666666653 3432 246666666
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 184 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 184 (579)
++|++.+ +| .+..+++|++|++++|.+.+ +|.. .++|+.|++++|.+. .+| .+..+++|++|++++|.+...
T Consensus 181 ~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 181 GNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred cCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc
Confidence 6666664 34 46666666666666666653 3322 245666666666665 445 366666666777666665543
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCC
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAP 264 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~ 264 (579)
.. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|+.|++++|++++ ++. ..+
T Consensus 253 ~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~--~~~ 317 (454)
T 1jl5_A 253 PD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD--LPP 317 (454)
T ss_dssp CS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC--CCT
T ss_pred cc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC--CcC
Confidence 21 23566666666666653 3332 2566666666666654 1110 1345555555555543 221 124
Q ss_pred CCcEEEcccCCCCCCCCcccccCCce-EEeeccccc
Q 008072 265 NLIALDVSYNPLSGNLPRNFAKGGLS-MNVIGSSIN 299 (579)
Q Consensus 265 ~L~~Ldls~N~l~~~~p~~~~~~~l~-l~l~~n~~~ 299 (579)
+|+.|++++|++++ +|..+ +.++ +++++|.+.
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~~--~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPALP--PRLERLIASFNHLA 350 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS
T ss_pred cCCEEECCCCcccc-ccccC--CcCCEEECCCCccc
Confidence 66677777777665 44322 2333 666666654
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.5e-26 Score=242.39 Aligned_cols=266 Identities=23% Similarity=0.249 Sum_probs=191.4
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCC-------------cEEEeeccCCCCCCccc
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNM-------------QYLSLGINNFTGRVPTE 68 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~p~~ 68 (579)
.|++|+++++++ +.+|++++++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 478899999999 8999999999999999999999999999999988765 999999999985 4542
Q ss_pred cCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccc
Q 008072 69 LGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA 148 (579)
Q Consensus 69 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 148 (579)
.++|++|++++|.+.+ +|.. +++|++|++++|++.+ ++.. .++|++|++++|++.+ +| .++.+++|+
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 3689999999999886 6643 4789999999998885 3321 2689999999999885 66 488889999
Q ss_pred eeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCc
Q 008072 149 DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK 228 (579)
Q Consensus 149 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 228 (579)
+|++++|.+.+ +|.. ..+|++|++++|.+.... .+..+++|+.|++++|.+++ +|.. .++|++|++++|.
T Consensus 157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNI 226 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred EEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCc
Confidence 99999998885 5543 358889999998877643 57888999999999998885 4432 2588999999998
Q ss_pred CCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCcccccCCceEEeeccccc
Q 008072 229 LTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAKGGLSMNVIGSSIN 299 (579)
Q Consensus 229 l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~~~l~l~l~~n~~~ 299 (579)
++ .+| .+..+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|... ...-.+++++|.+.
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~-l~~~~-~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD-LPELP-QSLTFLDVSENIFS 290 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCS
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc-cCccc-CcCCEEECcCCccC
Confidence 88 667 48888899999999998884 553 24788999999999886 55322 23334788888776
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.6e-24 Score=235.17 Aligned_cols=255 Identities=27% Similarity=0.350 Sum_probs=213.7
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+++.|+++++++. .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4789999999988 7787665 89999999999998 5665 5789999999999998 5665 67999999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|.+.+ +|. .+++|+.|++++|+++. +|.. +++|++|++++|.+.+ +|. .+++|+.|++++|.+.+ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 999985 444 67899999999999985 5553 5899999999999985 443 35789999999999985 5
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
| ..+++|+.|++++|.+..... .+++|+.|++++|.++ .+|. .+++|+.|+|++|.+++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 5 557899999999998876442 3579999999999998 4554 35889999999999985 56 4568
Q ss_pred CCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCCCCCccccc-CCce-EEeeccccc
Q 008072 242 TLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSGNLPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
+|+.|+|++|+++ .+|. .+++|+.|+|++|+++ .+|..+.. +.++ +++++|+++
T Consensus 242 ~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred cCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 9999999999998 6775 6789999999999999 77877777 6666 899999986
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.4e-26 Score=245.97 Aligned_cols=237 Identities=18% Similarity=0.147 Sum_probs=167.9
Q ss_pred eEEEEeCcccc------cccchhhcCCC----CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCc
Q 008072 4 GHLKMRILVLL------VTLPSELFMLR----KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT 73 (579)
Q Consensus 4 ~~L~l~~~~l~------~~lp~~l~~l~----~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 73 (579)
..+.+.++.+. ..+|..+..+. +|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..++
T Consensus 3 ~~l~~ng~~~~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~ 80 (487)
T 3oja_A 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS 80 (487)
T ss_dssp CEEEEETTEEEEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT
T ss_pred ceecCCCceeecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC
Confidence 44555555431 24555565554 79999999999998778889999999999999999986555 88899
Q ss_pred CCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeec
Q 008072 74 KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQ 153 (579)
Q Consensus 74 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (579)
+|++|+|++|.+.+.. ..++|++|++++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|+.|+++
T Consensus 81 ~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 81 TLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp TCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 9999999999886432 238899999999998865554 45788899999998888778788888888888888
Q ss_pred CCcCCCCchhhhh-cCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCC
Q 008072 154 GTLLEGPIPRSFR-ALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ 232 (579)
Q Consensus 154 ~n~l~~~~p~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (579)
+|.+.+.+|..+. .+++|+.|++++|.+... +....+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~- 228 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL- 228 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-
Confidence 8888877777665 677777777777665543 222345666666666666653 33335555666666666666653
Q ss_pred CchhccCCCCCcEEEecCccCC
Q 008072 233 IPTSLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 233 ~p~~l~~l~~L~~L~L~~N~l~ 254 (579)
+|..+..+++|+.|++++|.+.
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBC
T ss_pred cchhhccCCCCCEEEcCCCCCc
Confidence 4545555556666666666555
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=5.2e-28 Score=257.50 Aligned_cols=298 Identities=19% Similarity=0.189 Sum_probs=225.9
Q ss_pred CeeEEEEeCccccc----ccchhhcCCCCCcEEEccCCcCCCCCchhhc-CCC----CCcEEEeeccCCCC----CCccc
Q 008072 2 PHGHLKMRILVLLV----TLPSELFMLRKLMDLNLGQNVLNGSIPAEIG-QLS----NMQYLSLGINNFTG----RVPTE 68 (579)
Q Consensus 2 ~L~~L~l~~~~l~~----~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~----~L~~L~Ls~n~l~~----~~p~~ 68 (579)
+|++|+|++|.+.. .++..+..+++|++|+|++|.+++..+..+. .++ +|++|+|++|.++. .++..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 58999999999875 5678888999999999999998765454443 455 69999999999984 56888
Q ss_pred cCCCcCCcEEEeecccCCCCCchhhC-----CCCCCcEEEeccCCCCCC----cchhhhCCCCCcEEEccCCcCCCCCch
Q 008072 69 LGNLTKLISLSFSSNNFFGPLPKELG-----KLTSLQQLYIDSSGVTGS----IPQEFANLKSLRILWASDNLFTGKIPE 139 (579)
Q Consensus 69 ~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~ 139 (579)
+..+++|++|++++|.+.+..+..+. ..++|++|++++|++++. ++..+..+++|++|++++|.+.+..+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 99999999999999988654333322 356899999999999864 356677889999999999998755444
Q ss_pred hhc-----CccccceeeecCCcCCCC----chhhhhcCCCCCeeEcCCCCCCCCChh-----hhcCCCCCCEEEcccCcC
Q 008072 140 FFG-----TLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTLD-----FLESQKSLSILSLRNCRV 205 (579)
Q Consensus 140 ~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~Ls~n~l 205 (579)
.+. ..++|+.|++++|.+... ++..+..+++|++|++++|.+...... ....+++|+.|+|++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 443 356899999999999874 577888899999999999877654322 223578999999999998
Q ss_pred CCC----cchhhcCCCCCCEEeccCCcCCCCCchhcc-----CCCCCcEEEecCccCCCC----CCccc-cCCCCcEEEc
Q 008072 206 SGK----IPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ-----DLSTLQYLYLGNNNLSGE----LPVNI-IAPNLIALDV 271 (579)
Q Consensus 206 ~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~----ip~~~-~~~~L~~Ldl 271 (579)
++. ++..+..+++|++|++++|.+++..+..+. ..++|+.|+|++|.+++. ++..+ .+++|++||+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 854 566677789999999999988654433332 236889999999988754 22222 2588888899
Q ss_pred ccCCCCCCCCcccc------cCCce-EEeeccccc
Q 008072 272 SYNPLSGNLPRNFA------KGGLS-MNVIGSSIN 299 (579)
Q Consensus 272 s~N~l~~~~p~~~~------~~~l~-l~l~~n~~~ 299 (579)
++|++++..+..+. .+.++ +++++|.++
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 88888765444333 22444 788888775
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1e-27 Score=255.16 Aligned_cols=298 Identities=17% Similarity=0.146 Sum_probs=233.8
Q ss_pred CeeEEEEeCcccccccchh-hcCCCCCcEEEccCCcCCC----CCchhhcCCCCCcEEEeeccCCCCCCcccc-CCCc--
Q 008072 2 PHGHLKMRILVLLVTLPSE-LFMLRKLMDLNLGQNVLNG----SIPAEIGQLSNMQYLSLGINNFTGRVPTEL-GNLT-- 73 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~-- 73 (579)
+|++|+|+++++....... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++...+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 5899999999987755444 7789999999999999885 356778889999999999999875444333 2344
Q ss_pred --CCcEEEeecccCCC----CCchhhCCCCCCcEEEeccCCCCCCcchhhh-----CCCCCcEEEccCCcCCCCC----c
Q 008072 74 --KLISLSFSSNNFFG----PLPKELGKLTSLQQLYIDSSGVTGSIPQEFA-----NLKSLRILWASDNLFTGKI----P 138 (579)
Q Consensus 74 --~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~----p 138 (579)
+|++|++++|.+.. .++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 79999999999874 4578899999999999999998755444433 3568999999999998643 5
Q ss_pred hhhcCccccceeeecCCcCCCCchhhhh-----cCCCCCeeEcCCCCCCCCC----hhhhcCCCCCCEEEcccCcCCCCc
Q 008072 139 EFFGTLTELADLRLQGTLLEGPIPRSFR-----ALNKLEDLRIGDLSAEDST----LDFLESQKSLSILSLRNCRVSGKI 209 (579)
Q Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~ 209 (579)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.... ...+..+++|+.|+|++|.+++..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 5667789999999999998765444443 3679999999999887753 455677899999999999987543
Q ss_pred -----chhhcCCCCCCEEeccCCcCCCC----CchhccCCCCCcEEEecCccCCCCCCcccc------CCCCcEEEcccC
Q 008072 210 -----PDQLGTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLSGELPVNII------APNLIALDVSYN 274 (579)
Q Consensus 210 -----~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~------~~~L~~Ldls~N 274 (579)
+..+..+++|++|++++|.++.. ++..+..+++|+.|+|++|++++..+..+. .++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 22233689999999999999864 577778899999999999998753332221 269999999999
Q ss_pred CCCCC----CCccccc-CCce-EEeeccccc
Q 008072 275 PLSGN----LPRNFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 275 ~l~~~----~p~~~~~-~~l~-l~l~~n~~~ 299 (579)
.+++. +|..+.. +.++ +++++|.+.
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 99976 3444434 5555 899999875
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-27 Score=236.93 Aligned_cols=245 Identities=18% Similarity=0.133 Sum_probs=212.4
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|++|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++ ++ ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECC
Confidence 58999999999999888999999999999999999986554 8999999999999999884 22 34899999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhh-cCccccceeeecCCcCCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFF-GTLTELADLRLQGTLLEGP 160 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~ 160 (579)
+|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 9999865443 46889999999999998878889999999999999999998777766 4789999999999999854
Q ss_pred chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCC-CCCchhccC
Q 008072 161 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT-GQIPTSLQD 239 (579)
Q Consensus 161 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~ 239 (579)
+ ....+++|++|++++|.+...... +..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ +.+|..+..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 3 233589999999999998876554 788999999999999999 67888899999999999999998 778888999
Q ss_pred CCCCcEEEecCc-cCCCCCCcc
Q 008072 240 LSTLQYLYLGNN-NLSGELPVN 260 (579)
Q Consensus 240 l~~L~~L~L~~N-~l~~~ip~~ 260 (579)
+++|+.|++++| .+.+..|..
T Consensus 261 ~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCC
T ss_pred cccceEEECCCchhccCCchhc
Confidence 999999999955 566665543
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.8e-24 Score=211.71 Aligned_cols=204 Identities=20% Similarity=0.204 Sum_probs=87.3
Q ss_pred CcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccC
Q 008072 51 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 130 (579)
Q Consensus 51 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 130 (579)
|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 44444444444433333444444444444444444433333444444444444444444433334444444444444444
Q ss_pred CcCCCCCchhhcCccccceeeecCCcCCCC-chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCC----EEEcccCcC
Q 008072 131 NLFTGKIPEFFGTLTELADLRLQGTLLEGP-IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLS----ILSLRNCRV 205 (579)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~Ls~n~l 205 (579)
|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.......+..+++|+ .|++++|.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 444433333344444444444444444331 233444444444433333333322222222222222 455555555
Q ss_pred CCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCC
Q 008072 206 SGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 255 (579)
Q Consensus 206 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 255 (579)
++..+..+ ...+|++|++++|++++..+..+..+++|+.|+|++|++.+
T Consensus 190 ~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 190 NFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 53222222 22345555555555554333334445555555555555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1e-25 Score=241.03 Aligned_cols=234 Identities=18% Similarity=0.116 Sum_probs=206.6
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++. | ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 68999999999999888999999999999999999987665 89999999999999999843 3 23899999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhc-CccccceeeecCCcCCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFG-TLTELADLRLQGTLLEGP 160 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~ 160 (579)
+|.+.+..+. .+++|++|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+.+.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 9999876543 468999999999999998898999999999999999999988888776 799999999999999865
Q ss_pred chhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCC-CCCchhccC
Q 008072 161 IPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT-GQIPTSLQD 239 (579)
Q Consensus 161 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~ 239 (579)
.+ ...+++|+.|++++|.+....+. +..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 33 34689999999999998876555 788999999999999999 47888899999999999999998 667777888
Q ss_pred CCCCcEEEec
Q 008072 240 LSTLQYLYLG 249 (579)
Q Consensus 240 l~~L~~L~L~ 249 (579)
++.|+.|+++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 8888877776
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.6e-23 Score=226.22 Aligned_cols=243 Identities=24% Similarity=0.279 Sum_probs=203.6
Q ss_pred CeeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEee
Q 008072 2 PHGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFS 81 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 81 (579)
+|+.|+|++|.+. .+|. .+++|++|+|++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|++|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 5899999999988 5666 5789999999999998 5665 67899999999999995 555 57899999999
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|++.. +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+.+ +
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence 999885 5553 5899999999999985 443 35789999999999985 55 557899999999999985 4
Q ss_pred hhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCC
Q 008072 162 PRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLS 241 (579)
Q Consensus 162 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 241 (579)
|. .+++|+.|++++|.+..... .+++|+.|+|++|.+++ +| ..+++|+.|+|++|+++ .+|. .++
T Consensus 197 ~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 43 34789999999998876542 35899999999999985 56 45689999999999998 5665 678
Q ss_pred CCcEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCcccc
Q 008072 242 TLQYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFA 285 (579)
Q Consensus 242 ~L~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~ 285 (579)
+|+.|+|++|+++ .+|..+ .+++|+.|+|++|++++.+|..+.
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 9999999999999 777655 479999999999999998876554
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=4.3e-24 Score=211.30 Aligned_cols=215 Identities=20% Similarity=0.200 Sum_probs=187.6
Q ss_pred ccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCC
Q 008072 16 TLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK 95 (579)
Q Consensus 16 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 95 (579)
.+|..+. ++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..+.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4565443 57999999999999777778999999999999999999777778999999999999999998888888999
Q ss_pred CCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCC-CchhhcCccccceeeecCCcCCCCchhhhhcCCCCC--
Q 008072 96 LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLE-- 172 (579)
Q Consensus 96 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-- 172 (579)
+++|++|++++|++.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 99999999999999987777899999999999999999864 689999999999999999999987777777777776
Q ss_pred --eeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCC
Q 008072 173 --DLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQI 233 (579)
Q Consensus 173 --~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 233 (579)
+|++++|.+.......+.. .+|+.|+|++|.+++..+..+..+++|++|++++|++++..
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 8999999888766655544 48999999999999666666789999999999999998654
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.8e-24 Score=212.20 Aligned_cols=222 Identities=18% Similarity=0.232 Sum_probs=134.8
Q ss_pred CcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
+..+++..+.+.+. ..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33444444444422 12334555555555555554 222 344555555555555555431 2344455555555555
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCCh
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTL 186 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 186 (579)
|.+++..+..+..+++|++|++++|++. +..+..+..+++|++|++++|.+.....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQ------------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCC------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCC------------------------ccCHHHhccCCCCCEEECCCCccCccCH
Confidence 5555444444444444555544444444 4444444455555555555555544444
Q ss_pred hhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCC
Q 008072 187 DFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNL 266 (579)
Q Consensus 187 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L 266 (579)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+.+.. ++|
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~------~~l 224 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC------PGI 224 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT------TTT
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC------cHH
Confidence 45566677778888888888666666788888899999988888777777888889999999999887654 468
Q ss_pred cEEEcccCCCCCCCCccc
Q 008072 267 IALDVSYNPLSGNLPRNF 284 (579)
Q Consensus 267 ~~Ldls~N~l~~~~p~~~ 284 (579)
+.|+++.|+++|.+|..+
T Consensus 225 ~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp HHHHHHHHHTGGGBBCTT
T ss_pred HHHHHHHHhCCCcccCcc
Confidence 888888899888888543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.7e-23 Score=200.94 Aligned_cols=202 Identities=22% Similarity=0.265 Sum_probs=92.0
Q ss_pred CCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
.++.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3455666655555 3444332 345555555555554444455555555555555555543333334445555555555
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDST 185 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~ 185 (579)
+|++.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLP------------------------PRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeC------------------------HHHhCcCcCCCEEECCCCcCCccC
Confidence 55554433334444444444444444444333 333333333333333333332222
Q ss_pred hhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCC
Q 008072 186 LDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 186 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 254 (579)
...+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 222333444444444444444333333444455555555555554333333444444444444444443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1e-22 Score=200.83 Aligned_cols=201 Identities=22% Similarity=0.258 Sum_probs=161.4
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
++.++++++++. .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 568999999988 4676554 6899999999999977777899999999999999999966666778999999999999
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99997777778999999999999999998888889999999999999999986666667778888888888887775544
Q ss_pred hhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCC
Q 008072 163 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLT 230 (579)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 230 (579)
..+..+ ++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.
T Consensus 175 ~~~~~l------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKL------------------------TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTC------------------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccC------------------------CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444444 45555556666665444445666677777777777665
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2e-23 Score=206.10 Aligned_cols=215 Identities=21% Similarity=0.228 Sum_probs=164.7
Q ss_pred eCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCC
Q 008072 9 RILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGP 88 (579)
Q Consensus 9 ~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 88 (579)
..+.+..... +..+++|+.|++++|.++. + ..+..+++|++|+|++|.+++ + ..+..+++|++|++++|.+.+.
T Consensus 27 ~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 27 KKKSVTDAVT--QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp TCSCTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCC
T ss_pred cCcccccccc--cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCcc
Confidence 3444443332 4578999999999999873 3 358889999999999999985 3 4789999999999999999988
Q ss_pred CchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcC
Q 008072 89 LPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRAL 168 (579)
Q Consensus 89 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 168 (579)
.+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 77778999999999999999998777788999999999999999987766667778888888888887775555444444
Q ss_pred CCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEe
Q 008072 169 NKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYL 248 (579)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 248 (579)
++|+.|+|++|.+++..+..+..+++|++|++++|.+.+. +++|+.|++
T Consensus 181 ------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~ 229 (272)
T 3rfs_A 181 ------------------------TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE 229 (272)
T ss_dssp ------------------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHH
T ss_pred ------------------------ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHH
Confidence 4555555666666655555566667777777777766533 345677777
Q ss_pred cCccCCCCCCcc
Q 008072 249 GNNNLSGELPVN 260 (579)
Q Consensus 249 ~~N~l~~~ip~~ 260 (579)
..|+++|.+|..
T Consensus 230 ~~n~~~g~ip~~ 241 (272)
T 3rfs_A 230 WINKHSGVVRNS 241 (272)
T ss_dssp HHHHTGGGBBCT
T ss_pred HHHhCCCcccCc
Confidence 777777777743
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.6e-24 Score=219.04 Aligned_cols=253 Identities=15% Similarity=0.141 Sum_probs=182.8
Q ss_pred CCcEEEccCCcCCCCCchhhcCC--CCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCC-CchhhCCCCCCcEE
Q 008072 26 KLMDLNLGQNVLNGSIPAEIGQL--SNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGP-LPKELGKLTSLQQL 102 (579)
Q Consensus 26 ~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L 102 (579)
.++.|+++++.+. +..+..+ ++|+.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3778888888766 5556666 7788888888888866554 55688888888888887655 67777888888888
Q ss_pred EeccCCCCCCcchhhhCCCCCcEEEccCC-cCCC-CCchhhcCccccceeeecCC-cCCCC-chhhhhcCC-CCCeeEcC
Q 008072 103 YIDSSGVTGSIPQEFANLKSLRILWASDN-LFTG-KIPEFFGTLTELADLRLQGT-LLEGP-IPRSFRALN-KLEDLRIG 177 (579)
Q Consensus 103 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~L~~L~l~ 177 (579)
++++|.+.+..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888887777788888888888888888 5664 25666777888888888888 77654 566778888 88888888
Q ss_pred CCC--CCCC-ChhhhcCCCCCCEEEcccCc-CCCCcchhhcCCCCCCEEeccCCc-CCCCCchhccCCCCCcEEEecCcc
Q 008072 178 DLS--AEDS-TLDFLESQKSLSILSLRNCR-VSGKIPDQLGTFAKLQLLDLSFNK-LTGQIPTSLQDLSTLQYLYLGNNN 252 (579)
Q Consensus 178 ~~~--~~~~-~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~ 252 (579)
+|. +... .+..+..+++|+.|+|++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 873 3322 23455678888888888888 666667777888888888888885 33222225677888888888888
Q ss_pred CCCCCCccccCCCCcEEEcccCCCCCCCCccc
Q 008072 253 LSGELPVNIIAPNLIALDVSYNPLSGNLPRNF 284 (579)
Q Consensus 253 l~~~ip~~~~~~~L~~Ldls~N~l~~~~p~~~ 284 (579)
++...-. .....+..|++++|++++..|..+
T Consensus 283 i~~~~~~-~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 283 VPDGTLQ-LLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp SCTTCHH-HHHHHSTTSEESCCCSCCTTCSSC
T ss_pred cCHHHHH-HHHhhCcceEEecccCccccCCcc
Confidence 3321110 011346667788888888777544
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.8e-24 Score=220.28 Aligned_cols=252 Identities=17% Similarity=0.172 Sum_probs=208.6
Q ss_pred eeEEEEeCcccccccchhhcCC--CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCC-CccccCCCcCCcEEE
Q 008072 3 HGHLKMRILVLLVTLPSELFML--RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGR-VPTELGNLTKLISLS 79 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 79 (579)
++.|+++++.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 578999998876 4556666 8999999999999976665 56799999999999999865 788899999999999
Q ss_pred eecccCCCCCchhhCCCCCCcEEEeccC-CCCCC-cchhhhCCCCCcEEEccCC-cCCCC-CchhhcCcc-ccceeeecC
Q 008072 80 FSSNNFFGPLPKELGKLTSLQQLYIDSS-GVTGS-IPQEFANLKSLRILWASDN-LFTGK-IPEFFGTLT-ELADLRLQG 154 (579)
Q Consensus 80 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~l~~ 154 (579)
+++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999998888888999999999999999 67753 6777889999999999999 88754 577788899 999999999
Q ss_pred C--cCC-CCchhhhhcCCCCCeeEcCCCC-CCCCChhhhcCCCCCCEEEcccCc-CCCCcchhhcCCCCCCEEeccCCcC
Q 008072 155 T--LLE-GPIPRSFRALNKLEDLRIGDLS-AEDSTLDFLESQKSLSILSLRNCR-VSGKIPDQLGTFAKLQLLDLSFNKL 229 (579)
Q Consensus 155 n--~l~-~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 229 (579)
| .+. +.+|..+..+++|++|++++|. +....+..+..+++|+.|++++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 9 455 4678888999999999999998 666677788899999999999995 43333336788999999999999 5
Q ss_pred CCCCchhccCCCCCcEEEecCccCCCCCCccc
Q 008072 230 TGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 261 (579)
Q Consensus 230 ~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~ 261 (579)
+...-..+. ..|+.|++++|++++..|...
T Consensus 284 ~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 284 PDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred CHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 543322232 236667799999998888543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-22 Score=202.38 Aligned_cols=204 Identities=23% Similarity=0.242 Sum_probs=135.5
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCc
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 100 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 100 (579)
+.+++++++++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+.+. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 566777777888777777 4555443 5677777777777766666777777777777777776543 222 5666666
Q ss_pred EEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCC
Q 008072 101 QLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 180 (579)
Q Consensus 101 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~ 180 (579)
+|++++|++. .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---------------------- 137 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---------------------- 137 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC----------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC----------------------
Confidence 6666666666 45555566666666666666666444445555555555555555554
Q ss_pred CCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCC
Q 008072 181 AEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 255 (579)
Q Consensus 181 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 255 (579)
......+..+++|+.|+|++|+++...+..+..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|.+..
T Consensus 138 --~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 --TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp --CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred --ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 444444455666777777777777544455677788888888888887 667777777788888888888764
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3e-24 Score=221.15 Aligned_cols=258 Identities=17% Similarity=0.147 Sum_probs=154.0
Q ss_pred EEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCc----hhhcCCC-CCcEEEeeccCCCCCCccccCCC-----cC
Q 008072 5 HLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIP----AEIGQLS-NMQYLSLGINNFTGRVPTELGNL-----TK 74 (579)
Q Consensus 5 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~ 74 (579)
..+|+.+++.+.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777766666668888888888776555 5666777 78888888777776656555554 67
Q ss_pred CcEEEeecccCCCCCchhh----CCC-CCCcEEEeccCCCCCCcchhhh----C-CCCCcEEEccCCcCCCCCchhhcCc
Q 008072 75 LISLSFSSNNFFGPLPKEL----GKL-TSLQQLYIDSSGVTGSIPQEFA----N-LKSLRILWASDNLFTGKIPEFFGTL 144 (579)
Q Consensus 75 L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l~~~~p~~~~~l 144 (579)
|++|+|++|.+.+..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|+|++|.+.+..+..+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--- 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL--- 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence 7777777777665555433 233 5666666666666654443332 2 2466666666665553222211
Q ss_pred cccceeeecCCcCCCCchhhhhcCC-CCCeeEcCCCCCCCCChh----hhcCC-CCCCEEEcccCcCCCC----cchhhc
Q 008072 145 TELADLRLQGTLLEGPIPRSFRALN-KLEDLRIGDLSAEDSTLD----FLESQ-KSLSILSLRNCRVSGK----IPDQLG 214 (579)
Q Consensus 145 ~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~Ls~n~l~~~----~~~~~~ 214 (579)
+..+..++ +|++|++++|.+...... .+..+ ++|+.|+|++|.+++. ++..+.
T Consensus 159 -----------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 159 -----------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp -----------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 22223332 444444444444433332 22333 3677777777777643 344444
Q ss_pred C-CCCCCEEeccCCcCCCCCc----hhccCCCCCcEEEecCccCCCCCCc-------cc-cCCCCcEEEcccCCCCCCCC
Q 008072 215 T-FAKLQLLDLSFNKLTGQIP----TSLQDLSTLQYLYLGNNNLSGELPV-------NI-IAPNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 215 ~-l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~ip~-------~~-~~~~L~~Ldls~N~l~~~~p 281 (579)
. .++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..+. .+ .+++|+.||+++|++....+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 3578888888887776544 2345667788888888875432221 11 24667888888888876644
Q ss_pred c
Q 008072 282 R 282 (579)
Q Consensus 282 ~ 282 (579)
.
T Consensus 302 ~ 302 (362)
T 3goz_A 302 I 302 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=8.6e-25 Score=227.26 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=129.8
Q ss_pred CCCCCCcEEEeccCCCCC----CcchhhhCCCCCcEEEccCCcCCCCCchhh----cCc---------cccceeeecCCc
Q 008072 94 GKLTSLQQLYIDSSGVTG----SIPQEFANLKSLRILWASDNLFTGKIPEFF----GTL---------TELADLRLQGTL 156 (579)
Q Consensus 94 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l---------~~L~~L~l~~n~ 156 (579)
..+++|++|+|++|.+.. .++..+..+++|++|+|++|.+.+..+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455666666666666654 245555666666666666666543322222 222 667777777777
Q ss_pred CC-CCch---hhhhcCCCCCeeEcCCCCCCCC----Chh-hhcCCCCCCEEEcccCcCC----CCcchhhcCCCCCCEEe
Q 008072 157 LE-GPIP---RSFRALNKLEDLRIGDLSAEDS----TLD-FLESQKSLSILSLRNCRVS----GKIPDQLGTFAKLQLLD 223 (579)
Q Consensus 157 l~-~~~p---~~~~~l~~L~~L~l~~~~~~~~----~~~-~l~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~ 223 (579)
+. ..++ ..+..+++|++|++++|.+... ..+ .+..+++|+.|+|++|.++ ..+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 3344 4566777888888887766532 122 5667888999999999885 46777888889999999
Q ss_pred ccCCcCCCC----Cchhcc--CCCCCcEEEecCccCCC----CCCccc-c-CCCCcEEEcccCCCCCCCC
Q 008072 224 LSFNKLTGQ----IPTSLQ--DLSTLQYLYLGNNNLSG----ELPVNI-I-APNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 224 Ls~n~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~ip~~~-~-~~~L~~Ldls~N~l~~~~p 281 (579)
|++|.+++. ++..+. .+++|+.|+|++|++++ .+|... . +++|+.|++++|++++..+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999998865 455663 38899999999999986 466554 2 6899999999999987654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.7e-22 Score=201.31 Aligned_cols=203 Identities=24% Similarity=0.214 Sum_probs=138.2
Q ss_pred hcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCc
Q 008072 45 IGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLR 124 (579)
Q Consensus 45 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 124 (579)
+.++++|++++++++.++ .+|..+. ++|++|+|++|.+.+..+..+..+++|++|++++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 345556666666666665 3444332 4555666666555544445555555555555555555532 211 3444555
Q ss_pred EEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCc
Q 008072 125 ILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCR 204 (579)
Q Consensus 125 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~ 204 (579)
.|++++|++. .+|..+..+++|++|++++|.+....+..+..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDLSHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECCSSCCS-------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 5555555444 334445555566666666666555555667778889999999999
Q ss_pred CCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc-CCCCcEEEcccCCCCC
Q 008072 205 VSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII-APNLIALDVSYNPLSG 278 (579)
Q Consensus 205 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~-~~~L~~Ldls~N~l~~ 278 (579)
+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|.... .++|+.|+|++|++..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99777777889999999999999999766667888999999999999999 6775554 6899999999999874
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.4e-24 Score=225.53 Aligned_cols=243 Identities=21% Similarity=0.285 Sum_probs=199.2
Q ss_pred ccchhhcCCCCCcEEEccCCcCCCCCc----hhhcCCCCCcEEEeeccC---CCCCCcccc-------CCCcCCcEEEee
Q 008072 16 TLPSELFMLRKLMDLNLGQNVLNGSIP----AEIGQLSNMQYLSLGINN---FTGRVPTEL-------GNLTKLISLSFS 81 (579)
Q Consensus 16 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~---l~~~~p~~~-------~~l~~L~~L~Ls 81 (579)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 577788889999999999999987644 446789999999999964 445566555 789999999999
Q ss_pred cccCCC----CCchhhCCCCCCcEEEeccCCCCCCcchh----hhCC---------CCCcEEEccCCcCC-CCCc---hh
Q 008072 82 SNNFFG----PLPKELGKLTSLQQLYIDSSGVTGSIPQE----FANL---------KSLRILWASDNLFT-GKIP---EF 140 (579)
Q Consensus 82 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~L~~n~l~-~~~p---~~ 140 (579)
+|.+.+ .+|..+..+++|++|+|++|.+....+.. +..+ ++|++|++++|.+. +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999987 36778889999999999999997544433 4444 89999999999998 4455 46
Q ss_pred hcCccccceeeecCCcCCC-----CchhhhhcCCCCCeeEcCCCCCC----CCChhhhcCCCCCCEEEcccCcCCCC---
Q 008072 141 FGTLTELADLRLQGTLLEG-----PIPRSFRALNKLEDLRIGDLSAE----DSTLDFLESQKSLSILSLRNCRVSGK--- 208 (579)
Q Consensus 141 ~~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~Ls~n~l~~~--- 208 (579)
+..+++|+.|++++|.+.. ..|..+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6788999999999999873 34447889999999999999875 33455678899999999999999865
Q ss_pred -cchhhc--CCCCCCEEeccCCcCCC----CCchhc-cCCCCCcEEEecCccCCCCCC
Q 008072 209 -IPDQLG--TFAKLQLLDLSFNKLTG----QIPTSL-QDLSTLQYLYLGNNNLSGELP 258 (579)
Q Consensus 209 -~~~~~~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~~ip 258 (579)
++..+. .+++|++|+|++|.+++ .+|..+ .++++|+.|+|++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 556663 48999999999999997 477777 668999999999999997664
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6.6e-24 Score=218.57 Aligned_cols=251 Identities=17% Similarity=0.167 Sum_probs=154.4
Q ss_pred EEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCc----cccCCCc-CCcEEEeecccCCCCCchhhCCC-----CC
Q 008072 29 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP----TELGNLT-KLISLSFSSNNFFGPLPKELGKL-----TS 98 (579)
Q Consensus 29 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 98 (579)
.++++.|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35566666666666655555556666666666664444 4455555 56666666666555444444332 55
Q ss_pred CcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCc-cccceeeecCCcCCCCchhhh----hc-CCCCC
Q 008072 99 LQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTL-TELADLRLQGTLLEGPIPRSF----RA-LNKLE 172 (579)
Q Consensus 99 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~----~~-l~~L~ 172 (579)
|++|++++|++++..+..+... +..+ ++|++|++++|.+.+..+..+ .. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 5555555555554433322211 1112 445555555555444333332 22 24667
Q ss_pred eeEcCCCCCCCCChhh----hcCCC-CCCEEEcccCcCCCCcchhh----cCC-CCCCEEeccCCcCCCC----Cchhcc
Q 008072 173 DLRIGDLSAEDSTLDF----LESQK-SLSILSLRNCRVSGKIPDQL----GTF-AKLQLLDLSFNKLTGQ----IPTSLQ 238 (579)
Q Consensus 173 ~L~l~~~~~~~~~~~~----l~~~~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~p~~l~ 238 (579)
+|++++|.+....... +..++ +|+.|+|++|.+++..+..+ ..+ ++|++|+|++|.+++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 7777776665544333 34555 99999999999987766543 445 5999999999999864 444555
Q ss_pred C-CCCCcEEEecCccCCCCCCcc-----ccCCCCcEEEcccCCCCCCCCc-------cccc-CCce-EEeeccccc
Q 008072 239 D-LSTLQYLYLGNNNLSGELPVN-----IIAPNLIALDVSYNPLSGNLPR-------NFAK-GGLS-MNVIGSSIN 299 (579)
Q Consensus 239 ~-l~~L~~L~L~~N~l~~~ip~~-----~~~~~L~~Ldls~N~l~~~~p~-------~~~~-~~l~-l~l~~n~~~ 299 (579)
. .++|+.|+|++|++++..+.. ..+++|+.|++++|.+++..+. .+.. +.++ +++++|.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 5 459999999999998644422 1258999999999996654432 2333 4455 899999876
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=203.67 Aligned_cols=225 Identities=17% Similarity=0.185 Sum_probs=160.6
Q ss_pred CCcEEEeeccCCCCCCcc---ccCCCcCCcEEEeecccCCCCCchhh--CCCCCCcEEEeccCCCCCCcc----hhhhCC
Q 008072 50 NMQYLSLGINNFTGRVPT---ELGNLTKLISLSFSSNNFFGPLPKEL--GKLTSLQQLYIDSSGVTGSIP----QEFANL 120 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l 120 (579)
.++.|.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777776665421100 12234567788888877777777766 777778888888877776444 334567
Q ss_pred CCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCC--ch--hhhhcCCCCCeeEcCCCCCCCCChh---hhcCCC
Q 008072 121 KSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGP--IP--RSFRALNKLEDLRIGDLSAEDSTLD---FLESQK 193 (579)
Q Consensus 121 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~~~ 193 (579)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+...... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 7888888888888777677777788888888888876542 22 2235677888888888877543221 246778
Q ss_pred CCCEEEcccCcCCCCcchhhcCC---CCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEE
Q 008072 194 SLSILSLRNCRVSGKIPDQLGTF---AKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALD 270 (579)
Q Consensus 194 ~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ld 270 (579)
+|++|+|++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++ +|....+++|+.|+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLT 300 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEE
Confidence 89999999999987777766665 69999999999998 6676664 799999999999985 35444568999999
Q ss_pred cccCCCCC
Q 008072 271 VSYNPLSG 278 (579)
Q Consensus 271 ls~N~l~~ 278 (579)
+++|+++.
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99999874
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=204.95 Aligned_cols=226 Identities=20% Similarity=0.178 Sum_probs=181.9
Q ss_pred CCCCcEEEccCCcCCCCCch---hhcCCCCCcEEEeeccCCCCCCcccc--CCCcCCcEEEeecccCCCCCc----hhhC
Q 008072 24 LRKLMDLNLGQNVLNGSIPA---EIGQLSNMQYLSLGINNFTGRVPTEL--GNLTKLISLSFSSNNFFGPLP----KELG 94 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~ 94 (579)
...++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578899988877532111 12235679999999999998888888 889999999999999987655 3455
Q ss_pred CCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCC--C--chhhcCccccceeeecCCcCCCCchh----hhh
Q 008072 95 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGK--I--PEFFGTLTELADLRLQGTLLEGPIPR----SFR 166 (579)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~p~----~~~ 166 (579)
.+++|++|++++|++.+..+..+..+++|++|+|++|++.+. + +..+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 789999999999999988888899999999999999997642 2 223467899999999999997 3333 357
Q ss_pred cCCCCCeeEcCCCCCCCCChhhhcCC---CCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCC
Q 008072 167 ALNKLEDLRIGDLSAEDSTLDFLESQ---KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTL 243 (579)
Q Consensus 167 ~l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 243 (579)
.+++|++|++++|.+....+..+..+ ++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 88999999999999888765555554 79999999999999 6777664 8999999999999964 43 6788999
Q ss_pred cEEEecCccCCC
Q 008072 244 QYLYLGNNNLSG 255 (579)
Q Consensus 244 ~~L~L~~N~l~~ 255 (579)
+.|+|++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999874
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2e-22 Score=194.92 Aligned_cols=196 Identities=17% Similarity=0.140 Sum_probs=95.7
Q ss_pred CCcEEEeeccCCCCCCccccCCCcCCcEEEeeccc-CCCCCchhhCCCCCCcEEEecc-CCCCCCcchhhhCCCCCcEEE
Q 008072 50 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN-FFGPLPKELGKLTSLQQLYIDS-SGVTGSIPQEFANLKSLRILW 127 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 127 (579)
+|++|+|++|++++..+..|..+++|++|++++|. +....+..+.++++|++|++++ |++++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 4433333455555555555555 555543344455555555555
Q ss_pred ccCCcCCCCCchhhcCccccc---eeeecCC-cCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCC-EEEccc
Q 008072 128 ASDNLFTGKIPEFFGTLTELA---DLRLQGT-LLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLS-ILSLRN 202 (579)
Q Consensus 128 L~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~Ls~ 202 (579)
+++|.+.+ +|. +..+++|+ .|++++| .+.+..+..+..++ +|+ .|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~------------------------~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC------------------------NETLTLKLYN 165 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB------------------------SSEEEEECCS
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh------------------------cceeEEEcCC
Confidence 55555553 333 44444444 5555555 44433233333333 344 444444
Q ss_pred CcCCCCcchhhcCCCCCCEEeccCCc-CCCCCchhccCC-CCCcEEEecCccCCCCCCccccCCCCcEEEcccC
Q 008072 203 CRVSGKIPDQLGTFAKLQLLDLSFNK-LTGQIPTSLQDL-STLQYLYLGNNNLSGELPVNIIAPNLIALDVSYN 274 (579)
Q Consensus 203 n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N 274 (579)
|.++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 166 n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp CCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 4444 233221122455555555553 543334445555 55555555555555 33322 3455555555544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.5e-21 Score=194.55 Aligned_cols=193 Identities=23% Similarity=0.317 Sum_probs=127.7
Q ss_pred CCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEE
Q 008072 47 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 126 (579)
Q Consensus 47 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 126 (579)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+.+.. . +..+++|++|++++|++.+. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 4455566666666555 233 3555566666666666555332 2 55566666666666665532 2 45566666666
Q ss_pred EccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCC
Q 008072 127 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 206 (579)
Q Consensus 127 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 206 (579)
++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..... +..+++|+.|+|++|.++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 666666654 222 5666666666666666664433 6667777777777776655433 677888889999999888
Q ss_pred CCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCC
Q 008072 207 GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSG 255 (579)
Q Consensus 207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 255 (579)
+..+ +..+++|++|++++|++++..+ +..+++|+.|+|++|++++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 5433 7788999999999999985543 7889999999999999974
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.1e-21 Score=193.86 Aligned_cols=211 Identities=23% Similarity=0.276 Sum_probs=168.0
Q ss_pred CcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccC
Q 008072 51 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 130 (579)
Q Consensus 51 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 130 (579)
+..+.+..+.++..+ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|++.+..+ +..+++|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 334445555555332 24568899999999998874 44 57889999999999999986444 88999999999999
Q ss_pred CcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcc
Q 008072 131 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 210 (579)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~ 210 (579)
|.+.+ ++ .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+..... +..+++|+.|+|++|.+++. +
T Consensus 95 n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~ 167 (308)
T 1h6u_A 95 NPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-T 167 (308)
T ss_dssp CCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G
T ss_pred CcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-h
Confidence 99885 33 688899999999999998864 33 8889999999999998876543 78889999999999999854 3
Q ss_pred hhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCC
Q 008072 211 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 278 (579)
Q Consensus 211 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~ 278 (579)
. +..+++|++|++++|.+++..+ +..+++|+.|+|++|++++..| ...+++|+.|++++|++++
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 3 7889999999999999985443 7888999999999999985443 4457899999999999875
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.5e-21 Score=187.22 Aligned_cols=206 Identities=19% Similarity=0.194 Sum_probs=171.4
Q ss_pred ccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccC-CCCCCccccCCCcCCcEEEeec-ccCCCCCch
Q 008072 14 LVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-FTGRVPTELGNLTKLISLSFSS-NNFFGPLPK 91 (579)
Q Consensus 14 ~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~ 91 (579)
...+|. +. ++|++|++++|.+++..+..+..+++|++|+|++|+ ++...+..|.++++|++|++++ |.+....+.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 345666 33 489999999999997666689999999999999997 8866666899999999999998 898876667
Q ss_pred hhCCCCCCcEEEeccCCCCCCcchhhhCCCCCc---EEEccCC-cCCCCCchhhcCccccc-eeeecCCcCCCCchhhhh
Q 008072 92 ELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLR---ILWASDN-LFTGKIPEFFGTLTELA-DLRLQGTLLEGPIPRSFR 166 (579)
Q Consensus 92 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~ 166 (579)
.+.++++|++|++++|++++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.+. .+|....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~ 176 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF 176 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhc
Confidence 88899999999999999986 665 88888888 9999999 88866667788999999 9999999998 5555433
Q ss_pred cCCCCCeeEcCCCC-CCCCChhhhcCC-CCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCc
Q 008072 167 ALNKLEDLRIGDLS-AEDSTLDFLESQ-KSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNK 228 (579)
Q Consensus 167 ~l~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 228 (579)
..++|++|++++|. +.......+..+ ++|+.|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 34899999999995 887777888888 99999999999998 45543 67899999998763
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.2e-21 Score=187.02 Aligned_cols=180 Identities=21% Similarity=0.221 Sum_probs=102.9
Q ss_pred CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 50 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
..++++++++.++ .+|..+. ++|+.|+|++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777776666 4554443 456666666666665555556666666666666666665555555556666666666
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCc
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 209 (579)
+|.+.+..+..+..+++|++|++++|.+.+ .....+..+++|+.|+|++|.+++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS------------------------LPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCC------------------------cChhHhccCCcccEEECcCCcCCccC
Confidence 665554444444444444444444444442 22233334455555556666665444
Q ss_pred chhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCC
Q 008072 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE 256 (579)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 256 (579)
+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44556666666666666666655555566666666666666666543
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2e-20 Score=182.20 Aligned_cols=181 Identities=22% Similarity=0.263 Sum_probs=148.9
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEe
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 104 (579)
...++++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45789999999998 6777655 58999999999999888889999999999999999999888888999999999999
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDS 184 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~ 184 (579)
++|++++..+..+..+++|++|+|++|++.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------------- 154 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL---------------- 154 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC----------------
Confidence 9999998878889999999999999999997777777888888888888888876555455544
Q ss_pred ChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCC
Q 008072 185 TLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ 232 (579)
Q Consensus 185 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (579)
++|+.|+|++|.+++..+..+..+++|++|+|++|.++..
T Consensus 155 --------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 155 --------TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --------cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4555555666666655555666677777777777777644
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2.2e-22 Score=221.02 Aligned_cols=295 Identities=15% Similarity=0.137 Sum_probs=162.5
Q ss_pred eeEEEEeCcc-ccc-ccchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCcEEEeeccCCCC----CCccccCCC
Q 008072 3 HGHLKMRILV-LLV-TLPSELFMLRKLMDLNLGQNVLNGS----IPAEIGQLSNMQYLSLGINNFTG----RVPTELGNL 72 (579)
Q Consensus 3 L~~L~l~~~~-l~~-~lp~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l 72 (579)
|++|+|++|. +.. .++.....+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++ .++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777775 221 2333334677777777777776654 33344566777777777777652 233334556
Q ss_pred cCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCC--------------------------CCCCcchhhhCCCCCcEE
Q 008072 73 TKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG--------------------------VTGSIPQEFANLKSLRIL 126 (579)
Q Consensus 73 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~--------------------------l~~~~~~~l~~l~~L~~L 126 (579)
++|++|++++|.+.+ +|..+.++++|++|+++... ....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 777777777766543 44445555555555554321 122455556666777777
Q ss_pred EccCCcCCCCCc-hhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCC-----------CCCCCCChh-hhcCCC
Q 008072 127 WASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD-----------LSAEDSTLD-FLESQK 193 (579)
Q Consensus 127 ~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-----------~~~~~~~~~-~l~~~~ 193 (579)
++++|.+.+... ..+..+++|+.|++.++...+.++.....+++|++|++.+ +.+...... ....++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 777776543322 3345666777777763322223344445667777777773 222222122 233467
Q ss_pred CCCEEEcccCcCCCCcchhhcC-CCCCCEEecc----CCcCCCC-----CchhccCCCCCcEEEecCcc--CCCCCCccc
Q 008072 194 SLSILSLRNCRVSGKIPDQLGT-FAKLQLLDLS----FNKLTGQ-----IPTSLQDLSTLQYLYLGNNN--LSGELPVNI 261 (579)
Q Consensus 194 ~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~N~--l~~~ip~~~ 261 (579)
+|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|+.|+|+.|. +++..+...
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 7777777777776655555544 6677777775 5556542 22334556666666665433 443222211
Q ss_pred --cCCCCcEEEcccCCCCCCCCccc-cc-CCce-EEeecccc
Q 008072 262 --IAPNLIALDVSYNPLSGNLPRNF-AK-GGLS-MNVIGSSI 298 (579)
Q Consensus 262 --~~~~L~~Ldls~N~l~~~~p~~~-~~-~~l~-l~l~~n~~ 298 (579)
.+++|+.|++++|++++.....+ .. +.|+ +++++|.+
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 14666666666666664221122 22 3444 66666664
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=2.7e-22 Score=220.24 Aligned_cols=297 Identities=14% Similarity=0.061 Sum_probs=204.2
Q ss_pred CeeEEEEeCcccccc----cchhhcCCCCCcEEEccCCcCCC----CCchhhcCCCCCcEEEeeccCCCCCCccccCCCc
Q 008072 2 PHGHLKMRILVLLVT----LPSELFMLRKLMDLNLGQNVLNG----SIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLT 73 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~----lp~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 73 (579)
+|++|+|++|.+.+. ++..+..+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+ +|..+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 577888888877655 44445567778888888777762 334444567777777777776653 444455555
Q ss_pred CCcEEEee---------------------------cccCCCCCchhhCCCCCCcEEEeccCCCCCCcc-hhhhCCCCCcE
Q 008072 74 KLISLSFS---------------------------SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRI 125 (579)
Q Consensus 74 ~L~~L~Ls---------------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~ 125 (579)
+|++|+++ ++. ...+|..+..+++|++|++++|.+.+... ..+..+++|+.
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 55555554 321 23456667778899999999999765433 44688999999
Q ss_pred EEccCCcCCCCCchhhcCccccceeeecC-----------CcCCCC-chhhhhcCCCCCeeEcCCCCCCCCChhhhcC-C
Q 008072 126 LWASDNLFTGKIPEFFGTLTELADLRLQG-----------TLLEGP-IPRSFRALNKLEDLRIGDLSAEDSTLDFLES-Q 192 (579)
Q Consensus 126 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-----------n~l~~~-~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~ 192 (579)
|+++++...+.++.....+++|++|++++ +.+++. ++.....+++|++|++..+.+.......+.. +
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 99994433333444456788999999993 455433 3334567899999999777776655555554 8
Q ss_pred CCCCEEEcc----cCcCCCC-----cchhhcCCCCCCEEeccCCc--CCCCCchhcc-CCCCCcEEEecCccCCCC-CCc
Q 008072 193 KSLSILSLR----NCRVSGK-----IPDQLGTFAKLQLLDLSFNK--LTGQIPTSLQ-DLSTLQYLYLGNNNLSGE-LPV 259 (579)
Q Consensus 193 ~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~L~~N~l~~~-ip~ 259 (579)
++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|+.|+|++|++++. ++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 899999996 5677753 44446678999999998654 6655444443 478999999999998752 332
Q ss_pred cc-cCCCCcEEEcccCCCCCCCCcccc-c-CCce-EEeecccccC
Q 008072 260 NI-IAPNLIALDVSYNPLSGNLPRNFA-K-GGLS-MNVIGSSINA 300 (579)
Q Consensus 260 ~~-~~~~L~~Ldls~N~l~~~~p~~~~-~-~~l~-l~l~~n~~~~ 300 (579)
.. .+++|+.|+|++|++++.....+. . +.++ +++++|+++.
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 22 368999999999998765433333 2 5565 8999998763
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.1e-20 Score=189.20 Aligned_cols=238 Identities=16% Similarity=0.172 Sum_probs=130.1
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCch-hhCCCCCCcE-EEec
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPK-ELGKLTSLQQ-LYID 105 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~L~ 105 (579)
++++-+++.++ .+|..+ .++|++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|. .+.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666776 566554 24677777777777744444677777777777777776554443 4566666654 4455
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCC-cCCCCchhhhhcCC-CCCeeEcCCCCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGT-LLEGPIPRSFRALN-KLEDLRIGDLSAED 183 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~-~L~~L~l~~~~~~~ 183 (579)
.|++....|..|..+++|++|++++|++....+..+....++..|++.++ .+....+..+..+. .++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 66776555666777777777777777776554444445555666666543 33322222333332 34455555554443
Q ss_pred CChhhhcCCCCCCEEEccc-CcCCCCcc-hhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc
Q 008072 184 STLDFLESQKSLSILSLRN-CRVSGKIP-DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 261 (579)
Q Consensus 184 ~~~~~l~~~~~L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~ 261 (579)
.....+. .++|+.|++++ |.++ .+| ..|..+++|++|||++|+|+. +|. ..+.+|+.|.+.++.-...+|...
T Consensus 169 i~~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 169 IHNSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp ECTTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCCTT
T ss_pred CChhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCCch
Confidence 3333222 23455555543 3333 333 345555666666666666652 332 123445555544444333555433
Q ss_pred cCCCCcEEEccc
Q 008072 262 IAPNLIALDVSY 273 (579)
Q Consensus 262 ~~~~L~~Ldls~ 273 (579)
.+++|+.+++++
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 455555555544
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.1e-19 Score=186.09 Aligned_cols=240 Identities=19% Similarity=0.193 Sum_probs=189.7
Q ss_pred eEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCcc-ccCCCcCCcE-EEee
Q 008072 4 GHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPT-ELGNLTKLIS-LSFS 81 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~-L~Ls 81 (579)
+.++-++++++ .+|..+ .+++++|+|++|.++...+..|.++++|++|+|++|++.+.+|. .|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677777877 577665 36899999999999954456799999999999999998766654 6889998876 5667
Q ss_pred cccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCC-cCCCCCchhhcCc-cccceeeecCCcCCC
Q 008072 82 SNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDN-LFTGKIPEFFGTL-TELADLRLQGTLLEG 159 (579)
Q Consensus 82 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l-~~L~~L~l~~n~l~~ 159 (579)
+|++....|..+..+++|++|++++|++....+..+....++..|++.++ .+....+..+..+ ..++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 78998777888999999999999999999776667777788999999774 5553333445555 468999999999984
Q ss_pred CchhhhhcCCCCCeeEcCC-CCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhcc
Q 008072 160 PIPRSFRALNKLEDLRIGD-LSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQ 238 (579)
Q Consensus 160 ~~p~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 238 (579)
+|.......+|++|.+.+ +.+.......+..+++|+.|+|++|+++ .+|.. .+.+|+.|.+.++.-...+| .+.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-Cch
Confidence 555555667899999975 5677777778899999999999999998 55542 35678888877665555777 488
Q ss_pred CCCCCcEEEecCc
Q 008072 239 DLSTLQYLYLGNN 251 (579)
Q Consensus 239 ~l~~L~~L~L~~N 251 (579)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 8999999999764
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=170.91 Aligned_cols=128 Identities=25% Similarity=0.278 Sum_probs=65.7
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccC
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 107 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 107 (579)
+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35555555555 344322 235666666666665444444555566666666666555444444455555555555555
Q ss_pred CCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCC
Q 008072 108 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 158 (579)
Q Consensus 108 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 158 (579)
++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 555444444455555555555555555433333444444444444444444
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=9.5e-20 Score=172.08 Aligned_cols=161 Identities=24% Similarity=0.261 Sum_probs=74.6
Q ss_pred CCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeec
Q 008072 74 KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQ 153 (579)
Q Consensus 74 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (579)
+|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333334444444444444444443333334444444444444
Q ss_pred CCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCC
Q 008072 154 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQI 233 (579)
Q Consensus 154 ~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 233 (579)
+|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|+|++|.+.+ .+++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 444444333344444444444444444444433334444455555555554432 2344555555555555555
Q ss_pred chhccCCC
Q 008072 234 PTSLQDLS 241 (579)
Q Consensus 234 p~~l~~l~ 241 (579)
|..++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 55544443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.1e-19 Score=196.30 Aligned_cols=184 Identities=22% Similarity=0.303 Sum_probs=124.2
Q ss_pred CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 50 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.+. .+| ..+++|++|++++|++++ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777764 555442 56777777777766 455 345677777777777765 555 443 67777777
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCc
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 209 (579)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+...+. +. ++|+.|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC-ch
Confidence 777765 444 46677777777777765 443 45677777777777665433 33 77888888888887 56
Q ss_pred chhhcCCCCC-------CEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccc
Q 008072 210 PDQLGTFAKL-------QLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNI 261 (579)
Q Consensus 210 ~~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~ 261 (579)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 65 443 66 88888888888 577777778888888888888887776543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3.8e-19 Score=192.11 Aligned_cols=184 Identities=25% Similarity=0.349 Sum_probs=126.3
Q ss_pred CCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeec
Q 008072 74 KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQ 153 (579)
Q Consensus 74 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (579)
+|+.|+|++|.+.+ +|..+ +++|++|+|++|+++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 77778887777765 56544 367778888777777 455 446777888888877775 555 443 77778888
Q ss_pred CCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCC
Q 008072 154 GTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQI 233 (579)
Q Consensus 154 ~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 233 (579)
+|.+++ +|. .+++|+.|++++|.+..... .+++|+.|+|++|.+++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777776 454 56777778887777765433 45677788888877775 555 44 77788888887777 55
Q ss_pred chhccCCCCC-------cEEEecCccCCCCCCccc-cCCCCcEEEcccCCCCCCCCcccc
Q 008072 234 PTSLQDLSTL-------QYLYLGNNNLSGELPVNI-IAPNLIALDVSYNPLSGNLPRNFA 285 (579)
Q Consensus 234 p~~l~~l~~L-------~~L~L~~N~l~~~ip~~~-~~~~L~~Ldls~N~l~~~~p~~~~ 285 (579)
|. +.. +| +.|+|++|+++ .+|..+ .+++|+.|+|++|++++.+|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 55 443 56 77788887777 466543 367777888888887777766543
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=4e-19 Score=193.88 Aligned_cols=174 Identities=25% Similarity=0.327 Sum_probs=125.9
Q ss_pred hcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCc
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQ 100 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 100 (579)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|++++..| +..+++|++|+|++|.+.+ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4567778888888887763 33 47777888888888888875443 7778888888888887764 23 577778888
Q ss_pred EEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCC
Q 008072 101 QLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 180 (579)
Q Consensus 101 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~ 180 (579)
+|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888887752 3477778888888888877754 557777788888888887776655 7777777777777776
Q ss_pred CCCCChhhhcCCCCCCEEEcccCcCCCC
Q 008072 181 AEDSTLDFLESQKSLSILSLRNCRVSGK 208 (579)
Q Consensus 181 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 208 (579)
+... +.+..+++|+.|+|++|.+.+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6654 4566777777777777777643
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1.9e-20 Score=205.60 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=58.9
Q ss_pred CeeEEEEeCcccccccchhhc-CCCCCcEEEccCC-cCCCC-CchhhcCCCCCcEEEeeccCCCCCCcccc----CCCcC
Q 008072 2 PHGHLKMRILVLLVTLPSELF-MLRKLMDLNLGQN-VLNGS-IPAEIGQLSNMQYLSLGINNFTGRVPTEL----GNLTK 74 (579)
Q Consensus 2 ~L~~L~l~~~~l~~~lp~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~ 74 (579)
+|++|+|+++.+.+..+..+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 466677777766666655554 4677777777766 34322 33333456777777777776554333322 24556
Q ss_pred CcEEEeecccCCCCCchh----hCCCCCCcEEEeccC
Q 008072 75 LISLSFSSNNFFGPLPKE----LGKLTSLQQLYIDSS 107 (579)
Q Consensus 75 L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n 107 (579)
|++|++++|. ...-... +.++++|++|++++|
T Consensus 186 L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 186 LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 7777776664 1111111 233566666666665
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=2.7e-20 Score=204.30 Aligned_cols=296 Identities=13% Similarity=0.075 Sum_probs=180.3
Q ss_pred CeeEEEEeCc-ccccc-cchhhcCCCCCcEEEccCCcCCCCCchhhc----CCCCCcEEEeeccC--CCCC-CccccCCC
Q 008072 2 PHGHLKMRIL-VLLVT-LPSELFMLRKLMDLNLGQNVLNGSIPAEIG----QLSNMQYLSLGINN--FTGR-VPTELGNL 72 (579)
Q Consensus 2 ~L~~L~l~~~-~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~-~p~~~~~l 72 (579)
+|++|+|++| .+... ++..+.++++|++|+|++|.+++..+..+. .+++|++|+|++|. ++.. ++..+..+
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 6899999999 55443 555555899999999999998876555444 56799999999886 2211 11223456
Q ss_pred cCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCC--------------------------CC----CCcchhhhCCCC
Q 008072 73 TKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG--------------------------VT----GSIPQEFANLKS 122 (579)
Q Consensus 73 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~--------------------------l~----~~~~~~l~~l~~ 122 (579)
++|++|++++|...+.++..+..+++|++|+++.+. +. ..++..+..+++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence 899999999883222356666677777777755442 11 123334446788
Q ss_pred CcEEEccCCcCCCCC-chhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCC---------CCCCCChhhh-cC
Q 008072 123 LRILWASDNLFTGKI-PEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDL---------SAEDSTLDFL-ES 191 (579)
Q Consensus 123 L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~---------~~~~~~~~~l-~~ 191 (579)
|++|++++|.+.+.. ...+..+++|+.|++.+|.....++.....+++|++|++.++ .+.......+ ..
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 999999988866432 233567888888888887221223333446788888888432 2222222222 24
Q ss_pred CCCCCEEEcccCcCCCCcchhhc-CCCCCCEEecc--C----CcCCCC-----CchhccCCCCCcEEEecCccCCCCCCc
Q 008072 192 QKSLSILSLRNCRVSGKIPDQLG-TFAKLQLLDLS--F----NKLTGQ-----IPTSLQDLSTLQYLYLGNNNLSGELPV 259 (579)
Q Consensus 192 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~ip~ 259 (579)
+++|+.|.+..|.+++..+..+. .+++|++|+++ + +.+++. ++..+..+++|+.|+|++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 67788887777777655444443 46777888777 3 445421 111245566777777755 44432221
Q ss_pred cc--cCCCCcEEEcccCCCCCCCCccccc--CCce-EEeecccc
Q 008072 260 NI--IAPNLIALDVSYNPLSGNLPRNFAK--GGLS-MNVIGSSI 298 (579)
Q Consensus 260 ~~--~~~~L~~Ldls~N~l~~~~p~~~~~--~~l~-l~l~~n~~ 298 (579)
.. .+++|+.|+|++|.+++..+..+.. +.|+ +++++|.+
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 11 1566777777777665544333311 3444 66666665
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.6e-18 Score=172.47 Aligned_cols=187 Identities=20% Similarity=0.281 Sum_probs=118.7
Q ss_pred EEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCC
Q 008072 29 DLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG 108 (579)
Q Consensus 29 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 108 (579)
.+.+..+.+++..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|+
T Consensus 28 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 33444444443222 2345566666666666652 22 35566666666666666654332 5666666666666666
Q ss_pred CCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhh
Q 008072 109 VTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDF 188 (579)
Q Consensus 109 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~ 188 (579)
+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+
T Consensus 102 l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 102 VKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 653 22 366666666666666666642 3456666677777777766654 456677777777777776665443
Q ss_pred hcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCC
Q 008072 189 LESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTG 231 (579)
Q Consensus 189 l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 231 (579)
+..+++|+.|+|++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 174 l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 6777888888888888874 44 37888999999999998875
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=9.9e-19 Score=190.80 Aligned_cols=192 Identities=20% Similarity=0.288 Sum_probs=129.4
Q ss_pred CCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEE
Q 008072 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 103 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 103 (579)
+..+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3345566677776664333 4567788888888888873 44 47788888888888888876544 77888888888
Q ss_pred eccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCC
Q 008072 104 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183 (579)
Q Consensus 104 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 183 (579)
|++|.+.+ ++ .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 88888874 33 67778888888888888774 2 3466777777777777777654 456666666666666665554
Q ss_pred CChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCC
Q 008072 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTG 231 (579)
Q Consensus 184 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 231 (579)
..+ +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 433 5556666666666666653 22 35556666666666666553
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.2e-18 Score=167.80 Aligned_cols=189 Identities=23% Similarity=0.291 Sum_probs=119.7
Q ss_pred CcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccC
Q 008072 51 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASD 130 (579)
Q Consensus 51 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 130 (579)
+..+.+..+.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|++.+..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 444455555555322 234677777888877777543 3 36667777777777777775433 67777777777777
Q ss_pred CcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcc
Q 008072 131 NLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIP 210 (579)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~ 210 (579)
|.+.+ ++ .+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+++.
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc--
Confidence 77664 22 255566666666666655532 2344455666666666666643
Q ss_pred hhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCccccCCCCcEEEcccCCCCC
Q 008072 211 DQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNIIAPNLIALDVSYNPLSG 278 (579)
Q Consensus 211 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~~L~~Ldls~N~l~~ 278 (579)
..+..+++|++|++++|++++..+ +..+++|+.|+|++|++++ +|....+++|+.|++++|+++.
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccC
Confidence 346667777777777777775443 6677777777777777763 4543346777778888877764
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=161.87 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=75.7
Q ss_pred EEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecc
Q 008072 5 HLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIP-AEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 83 (579)
Q Consensus 5 ~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 83 (579)
.++++++.+.. +|..+. +.+++|+|++|.+++..+ ..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 34455554432 343332 234455555555554322 22445555555555555555444444555555555555555
Q ss_pred cCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC
Q 008072 84 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 84 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
.+.+..+..+..+++|++|+|++|++.+..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 5554444445555555555555555554445555555555555555555554445555555555555555555443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=5.3e-18 Score=161.55 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=84.4
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccC
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 107 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 107 (579)
+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|++.+..|..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444332 34555555555555444445555555666666655555555555555556666666666
Q ss_pred CCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCC
Q 008072 108 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 181 (579)
Q Consensus 108 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~ 181 (579)
+++...+..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55544344455555666666666665555555555556666666666666555555555566666666665543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.9e-17 Score=158.76 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEe
Q 008072 25 RKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYI 104 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 104 (579)
++|++|+|++|.+++..|..+..+++|++|+|++|+++...+..|..+++|++|+|++|++.+..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555544555555555555555555554333334455555555555555555444444455555555555
Q ss_pred ccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC
Q 008072 105 DSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 105 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
++|++. .+|..+..+++|++|+|++|++.+..+..+..+++|+.|++++|.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555555 445555555555555555555554433444555555555555555443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.7e-17 Score=155.21 Aligned_cols=154 Identities=21% Similarity=0.147 Sum_probs=129.0
Q ss_pred cCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcE
Q 008072 22 FMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQ 101 (579)
Q Consensus 22 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 101 (579)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56788999999999998 566 6888999999999999775 3347888999999999999998777888889999999
Q ss_pred EEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCC
Q 008072 102 LYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSA 181 (579)
Q Consensus 102 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~ 181 (579)
|++++|++.+..+..+..+++|++|++++|...+.+| .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 9999999998788889999999999999998333555 68889999999999999886 33 688899999999998876
Q ss_pred C
Q 008072 182 E 182 (579)
Q Consensus 182 ~ 182 (579)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=4.9e-18 Score=174.50 Aligned_cols=176 Identities=20% Similarity=0.153 Sum_probs=134.2
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccC-CCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELG-NLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
+.++++++.++ .+|..+. +.|++|+|++|++++..+..|. .+++|++|+|++|++.+..+..+.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888877 4665443 3578888888888866666666 788888888888888766667788888888888888
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhh---hcCCCCCeeEcCCCCCCC
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSF---RALNKLEDLRIGDLSAED 183 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~l~~~~~~~ 183 (579)
|++....+..|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..+ ..+++|+.|+|++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88876666677888888888888888887667778888888888888888876544444 567888888888888887
Q ss_pred CChhhhcCCCC--CCEEEcccCcCC
Q 008072 184 STLDFLESQKS--LSILSLRNCRVS 206 (579)
Q Consensus 184 ~~~~~l~~~~~--L~~L~Ls~n~l~ 206 (579)
.....+..++. |+.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 77777777776 478899998876
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.7e-17 Score=158.01 Aligned_cols=150 Identities=20% Similarity=0.257 Sum_probs=84.3
Q ss_pred EEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccC
Q 008072 6 LKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNF 85 (579)
Q Consensus 6 L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 85 (579)
++++++++. .+|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 444444443 2343332 4556666666666544444555566666666666666555555566666666666666665
Q ss_pred CCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCC
Q 008072 86 FGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLE 158 (579)
Q Consensus 86 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 158 (579)
....+..+..+++|++|+|++|++.+..|..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5443344555666666666666666555555556666666666666665555555555566666666665554
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-17 Score=153.52 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=91.2
Q ss_pred cCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcE
Q 008072 46 GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRI 125 (579)
Q Consensus 46 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 125 (579)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566777777777776 444 4666777777777777543 2335666666677776666666555666666666666
Q ss_pred EEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcC
Q 008072 126 LWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRV 205 (579)
Q Consensus 126 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 205 (579)
|++++|.+.+..+..+..+++|++|++++|...+.+| .+..+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-------------------------~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-------------------------PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-------------------------GGGGCSSCCEEECTTBCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-------------------------hhcCCCCCCEEECCCCCC
Confidence 6666666665555555666666666666655222333 344455555666666665
Q ss_pred CCCcchhhcCCCCCCEEeccCCcCC
Q 008072 206 SGKIPDQLGTFAKLQLLDLSFNKLT 230 (579)
Q Consensus 206 ~~~~~~~~~~l~~L~~L~Ls~n~l~ 230 (579)
++ ++ .+..+++|++|++++|++.
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC---
T ss_pred cC-hH-HhccCCCCCEEEeeCcccC
Confidence 53 22 4556666666666666654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.1e-17 Score=171.98 Aligned_cols=178 Identities=20% Similarity=0.183 Sum_probs=151.9
Q ss_pred CcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhC-CCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 51 MQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG-KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 51 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
-+.++++++.++ .+|..+. +.++.|+|++|++.+..+..+. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 468999999998 5776554 4689999999999877777777 89999999999999997777889999999999999
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhh---cCCCCCCEEEcccCcCC
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFL---ESQKSLSILSLRNCRVS 206 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~Ls~n~l~ 206 (579)
+|++.+..+..+..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.+.......+ ..+++|+.|+|++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987777788999999999999999998888899999999999999999988777766 56899999999999999
Q ss_pred CCcchhhcCCCC--CCEEeccCCcCCC
Q 008072 207 GKIPDQLGTFAK--LQLLDLSFNKLTG 231 (579)
Q Consensus 207 ~~~~~~~~~l~~--L~~L~Ls~n~l~~ 231 (579)
...+..+..++. ++.|+|++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 655567777776 4889999999873
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=157.05 Aligned_cols=151 Identities=21% Similarity=0.233 Sum_probs=107.7
Q ss_pred CcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCc-cccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEec
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVP-TELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYID 105 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 105 (579)
-+.+++++|.++ .+|..+. +.+++|+|++|++++..+ ..|..+++|++|+|++|.+.+..+..+..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888887 4666543 346788888888876544 346778888888888888776666677778888888888
Q ss_pred cCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCC
Q 008072 106 SSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLS 180 (579)
Q Consensus 106 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~ 180 (579)
+|++++..+..+..+++|++|+|++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 888877767777777788888888777777667777777777777777777776656666555555555554443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=6.2e-17 Score=155.12 Aligned_cols=148 Identities=25% Similarity=0.233 Sum_probs=87.5
Q ss_pred CcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++....+..+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456666666665 4554332 5667777777777666666666666777777777666544444556666666666666
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCC
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGD 178 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 178 (579)
|++++..+..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 6666555555566666666666666666 4555555555566666655555543333344444443333333
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4e-20 Score=200.61 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=119.2
Q ss_pred cCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeeccc-------------CCCCCchhhCCCCCCcEEE-eccCCCCC
Q 008072 46 GQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN-------------FFGPLPKELGKLTSLQQLY-IDSSGVTG 111 (579)
Q Consensus 46 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 111 (579)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34556666666666665 556666666666666665443 2233344444444444444 3322211
Q ss_pred CcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcC
Q 008072 112 SIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLES 191 (579)
Q Consensus 112 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 191 (579)
+|+.+.+++|.+.. ++ ...|+.|++++|.+++ +|. +..+++|+.|++++|.+.. .+..+..
T Consensus 424 ----------~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGG
T ss_pred ----------hhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhc
Confidence 11122222222221 11 1135556666666554 343 5666666666666666552 2345666
Q ss_pred CCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCC-chhccCCCCCcEEEecCccCCCCCCccc----cCCCC
Q 008072 192 QKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQI-PTSLQDLSTLQYLYLGNNNLSGELPVNI----IAPNL 266 (579)
Q Consensus 192 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ip~~~----~~~~L 266 (579)
+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++..|... .+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 7777777777787774 56 6778888888888888888665 7788888888888888888886655322 15788
Q ss_pred cEEEc
Q 008072 267 IALDV 271 (579)
Q Consensus 267 ~~Ldl 271 (579)
+.||+
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 88764
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.7e-20 Score=200.02 Aligned_cols=189 Identities=20% Similarity=0.185 Sum_probs=148.5
Q ss_pred CCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCC-------------CCCCcchhhhCCCCCcEEE-ccCCcCCC
Q 008072 70 GNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSG-------------VTGSIPQEFANLKSLRILW-ASDNLFTG 135 (579)
Q Consensus 70 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-L~~n~l~~ 135 (579)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 56889999999999986 789999999999999987654 3444555555556666555 33332
Q ss_pred CCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcC
Q 008072 136 KIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGT 215 (579)
Q Consensus 136 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 215 (579)
+.+|+.+.+..|.+... |. ..|+.|++++|.+...+ .+..+++|+.|+|++|.++ .+|..++.
T Consensus 422 --------~~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 422 --------LDDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred --------cchhhhhhhhccccccc-Cc-----cCceEEEecCCCCCCCc--CccccccCcEeecCccccc-ccchhhhc
Confidence 23344455555544421 11 35899999999888754 2888999999999999999 88999999
Q ss_pred CCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCC-Cccc-cCCCCcEEEcccCCCCCCCC
Q 008072 216 FAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGEL-PVNI-IAPNLIALDVSYNPLSGNLP 281 (579)
Q Consensus 216 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i-p~~~-~~~~L~~Ldls~N~l~~~~p 281 (579)
+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+ .+++|+.|+|++|++++..|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999999999996 67 7999999999999999999875 7655 47999999999999998766
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.8e-17 Score=160.01 Aligned_cols=170 Identities=21% Similarity=0.285 Sum_probs=99.8
Q ss_pred CCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEE
Q 008072 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 103 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 103 (579)
+.+++.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 4455666666666663 33 4556666777777777666 344 46666666666666666654332 56666666666
Q ss_pred eccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCC
Q 008072 104 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183 (579)
Q Consensus 104 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 183 (579)
+++|++++ +|. +.. ++|+.|++++|.+++ ++ .+..+++|+.|++++|.++ .
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~------------------------~ 142 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK------------------------S 142 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC------------------------B
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC------------------------C
Confidence 66666653 222 112 556666666655553 22 2444455555555554444 3
Q ss_pred CChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCC
Q 008072 184 STLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQ 232 (579)
Q Consensus 184 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (579)
. +.+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 143 ~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 2345566677777777777654 4566777888888888877744
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=6.8e-17 Score=158.23 Aligned_cols=171 Identities=25% Similarity=0.340 Sum_probs=125.4
Q ss_pred CCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEE
Q 008072 47 QLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 126 (579)
Q Consensus 47 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 126 (579)
.+.++..++++.+.+++ ++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 35567777888888773 33 46777888888888887763 44 56777888888888887775443 7777777777
Q ss_pred EccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCC
Q 008072 127 WASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVS 206 (579)
Q Consensus 127 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~ 206 (579)
++++|++.+ +|.. .. ++|+.|++++|.+. .. +.+..+++|+.|+|++|+++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~------------------------~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELR------------------------DT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCS------------------------BS--GGGTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccC------------------------CC--hhhcCcccccEEECCCCcCC
Confidence 777777764 3321 12 55555555555444 32 23667788999999999998
Q ss_pred CCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCC
Q 008072 207 GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGE 256 (579)
Q Consensus 207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 256 (579)
+. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 54 4 688899999999999999966 5788999999999999999854
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.6e-17 Score=183.92 Aligned_cols=218 Identities=20% Similarity=0.228 Sum_probs=117.8
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEE-----ccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcE
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLN-----LGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLIS 77 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~-----Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 77 (579)
+++|.|.++++.. .|..+.....|..+. ++.|.+. ..+..+..+++|++|+|++|.+. .+|..+..+++|++
T Consensus 175 ~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 175 TPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred cceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 5677887777765 343333333333322 3333333 45777888999999999999998 77877889999999
Q ss_pred EEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcC
Q 008072 78 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL 157 (579)
Q Consensus 78 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 157 (579)
|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 999999998 78888999999999999999999 78999999999999999999987 7788899999999999999999
Q ss_pred CCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCC--------cC
Q 008072 158 EGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFN--------KL 229 (579)
Q Consensus 158 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l 229 (579)
++.+|..+..+.... ..|+|++|.+++.+|. .|..|+++.| .+
T Consensus 329 ~~~~p~~~~~~~~~~-----------------------~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l 379 (727)
T 4b8c_D 329 EKQFLKILTEKSVTG-----------------------LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSL 379 (727)
T ss_dssp CSHHHHHHHHHHHHH-----------------------HHHHHHHCCCCCCCCC------C-------------------
T ss_pred CCCChHHHhhcchhh-----------------------hHHhhccCcccCcCcc------ccceeEeecccccccccCCc
Confidence 988888775432110 0134555666555543 3444455544 33
Q ss_pred CCCCchhccCCCCCcEEEecCccCCC
Q 008072 230 TGQIPTSLQDLSTLQYLYLGNNNLSG 255 (579)
Q Consensus 230 ~~~~p~~l~~l~~L~~L~L~~N~l~~ 255 (579)
.+..+..+..+..++...++.|.+.+
T Consensus 380 ~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 380 QQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------------------CCCG
T ss_pred cccccchhhcccccceeeeecccccc
Confidence 33333344555666666777776653
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.9e-17 Score=185.05 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=102.9
Q ss_pred CCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhc
Q 008072 88 PLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRA 167 (579)
Q Consensus 88 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 167 (579)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666677777777777766 55666666777777777777776 66666777777777777777776 56777777
Q ss_pred CCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCC-CCCEEeccCCcCCCCCchhccCCCCCcEE
Q 008072 168 LNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFA-KLQLLDLSFNKLTGQIPTSLQDLSTLQYL 246 (579)
Q Consensus 168 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 246 (579)
+++|++|+|++|.+.... ..+..+++|+.|+|++|.+++.+|..+..+. .+..|+|++|.+++.+|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCCCCC-SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCCccC-hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 777777777777766443 3477788899999999999988888765432 223478999999988885 45667
Q ss_pred EecCc----cCCCCCCccc-----cCCCCcEEEcccCCCCC
Q 008072 247 YLGNN----NLSGELPVNI-----IAPNLIALDVSYNPLSG 278 (579)
Q Consensus 247 ~L~~N----~l~~~ip~~~-----~~~~L~~Ldls~N~l~~ 278 (579)
++++| ...|.++... .+..+....+++|-+.+
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp -------------------------------------CCCG
T ss_pred EeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 77776 3333444322 13555667888888764
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.8e-16 Score=140.22 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=100.2
Q ss_pred CCCCcEEEccCCcCC-CCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEE
Q 008072 24 LRKLMDLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQL 102 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 102 (579)
.++|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888887 67777777888888888888888754 667788888888888888877677777778888888
Q ss_pred EeccCCCCCCc-chhhhCCCCCcEEEccCCcCCCCCc---hhhcCccccceeeecCCcCC
Q 008072 103 YIDSSGVTGSI-PQEFANLKSLRILWASDNLFTGKIP---EFFGTLTELADLRLQGTLLE 158 (579)
Q Consensus 103 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~n~l~ 158 (579)
++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887532 2667777888888888887775444 36677777777777777655
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.8e-16 Score=142.79 Aligned_cols=134 Identities=21% Similarity=0.118 Sum_probs=119.7
Q ss_pred CeeEEEEeCcccc-cccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEe
Q 008072 2 PHGHLKMRILVLL-VTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSF 80 (579)
Q Consensus 2 ~L~~L~l~~~~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 80 (579)
+|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 5899999999998 78999889999999999999999965 77899999999999999999878888888999999999
Q ss_pred ecccCCCCC-chhhCCCCCCcEEEeccCCCCCCcc---hhhhCCCCCcEEEccCCcCCCCCc
Q 008072 81 SSNNFFGPL-PKELGKLTSLQQLYIDSSGVTGSIP---QEFANLKSLRILWASDNLFTGKIP 138 (579)
Q Consensus 81 s~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~p 138 (579)
++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 999998642 2789999999999999999996655 58899999999999999887 344
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=4.9e-16 Score=144.57 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=75.5
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCcc-ccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPT-ELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
+.+++++|.++ .+|..+.. +|++|+|++|.+++..+. .|..+++|++|+|++|++.+..|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45566666554 44543322 556666666666543332 255566666666666666555555566666666666666
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
|++++..+..+..+++|++|+|++|++++..|..+..+++|+.|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666555555556666666666666666555555666666666666666665543
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.6e-16 Score=159.41 Aligned_cols=196 Identities=12% Similarity=0.055 Sum_probs=132.6
Q ss_pred CcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcC----CCCCchhhc-----
Q 008072 72 LTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLF----TGKIPEFFG----- 142 (579)
Q Consensus 72 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~p~~~~----- 142 (579)
+++|+.|+|.+ .+..+-+..|.++++|+.|+++.|.+....+..|..+.++..+.+..+.. .......+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77788888777 66655556677777888888877777655556666666666665544211 100111111
Q ss_pred ---------------------CccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcc
Q 008072 143 ---------------------TLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 201 (579)
Q Consensus 143 ---------------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls 201 (579)
...+++.+.+.++-...........+++|++|+|++|.+.......|.++++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 23344455554432211111122348899999999988888888889999999999999
Q ss_pred cCcCCCCcchhhcCCCCCC-EEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc--CCCCcEEEc
Q 008072 202 NCRVSGKIPDQLGTFAKLQ-LLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNLIALDV 271 (579)
Q Consensus 202 ~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldl 271 (579)
+| ++...+.+|.++++|+ .|++.+ .++...+.+|.++++|+.|++++|+++ .++...+ +++|+.|..
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 87 6644556788999999 999988 777666778999999999999999988 5554433 678887753
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=1.2e-15 Score=141.88 Aligned_cols=132 Identities=21% Similarity=0.247 Sum_probs=109.1
Q ss_pred eEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCch-hhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 4 GHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPA-EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
+.|+++++++ ..+|..+. ++|++|++++|.+++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4678888887 46676554 3888999999988865554 478888999999999999888788888899999999999
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCc
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 138 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 138 (579)
|++.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 98888777778888999999999999988888888888999999999998886654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=5.8e-16 Score=137.67 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=57.6
Q ss_pred CCCcEEEccCCcCC-CCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEE
Q 008072 25 RKLMDLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 103 (579)
Q Consensus 25 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 103 (579)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555555556666666666655533 4455555555555555555544454444455555555
Q ss_pred eccCCCCCC-cchhhhCCCCCcEEEccCCcCC
Q 008072 104 IDSSGVTGS-IPQEFANLKSLRILWASDNLFT 134 (579)
Q Consensus 104 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 134 (579)
+++|++++. .+..+..+++|++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555555532 1244445555555555555444
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=4.8e-16 Score=157.48 Aligned_cols=257 Identities=12% Similarity=0.089 Sum_probs=175.6
Q ss_pred CCCCcEEEccCCcCCCCCchhhcC-CCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCC-------
Q 008072 24 LRKLMDLNLGQNVLNGSIPAEIGQ-LSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGK------- 95 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~------- 95 (579)
+.+|+.|.++++ +.......+.. +++|++|||++|++.. ....-+.++.++.+.+..|.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccccC---HHHhccccccccc
Confidence 668999999875 22222233444 7889999999999871 1111223333566666666432 345666
Q ss_pred -CCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcC----CCCchhhhhcCCC
Q 008072 96 -LTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLL----EGPIPRSFRALNK 170 (579)
Q Consensus 96 -l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l----~~~~p~~~~~l~~ 170 (579)
+++|+.|+|.+ .+...-+.+|..|++|+.|++.+|.+....+.+|..+.++..+.+..+.. .......|..+..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 99999999998 88866677899999999999999998866677788777777776654211 1111223334444
Q ss_pred CC--------------------------eeEcCCCCCCCCChhhh-cCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEe
Q 008072 171 LE--------------------------DLRIGDLSAEDSTLDFL-ESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLD 223 (579)
Q Consensus 171 L~--------------------------~L~l~~~~~~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 223 (579)
|+ .+.+.+. +.......+ ..+++|+.|+|++|.++......|..+++|+.|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 44 3333222 111111112 2378999999999999855556799999999999
Q ss_pred ccCCcCCCCCchhccCCCCCc-EEEecCccCCCCCCcccc--CCCCcEEEcccCCCCCCCCccccc-CCce
Q 008072 224 LSFNKLTGQIPTSLQDLSTLQ-YLYLGNNNLSGELPVNII--APNLIALDVSYNPLSGNLPRNFAK-GGLS 290 (579)
Q Consensus 224 Ls~n~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N~l~~~~p~~~~~-~~l~ 290 (579)
|.+| ++...+.+|.++.+|+ .|++.+ +++ .|+...+ +++|+.|++++|+++..-+..|.. +.|+
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 9998 7766677899999999 999998 666 5554433 699999999999999766666665 5554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.7e-15 Score=134.57 Aligned_cols=128 Identities=21% Similarity=0.159 Sum_probs=109.2
Q ss_pred CCCCcEEEeeccCCC-CCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEE
Q 008072 48 LSNMQYLSLGINNFT-GRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRIL 126 (579)
Q Consensus 48 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 126 (579)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467999999999998 78888889999999999999998865 678889999999999999998788888889999999
Q ss_pred EccCCcCCCC-CchhhcCccccceeeecCCcCCCCch---hhhhcCCCCCeeEcC
Q 008072 127 WASDNLFTGK-IPEFFGTLTELADLRLQGTLLEGPIP---RSFRALNKLEDLRIG 177 (579)
Q Consensus 127 ~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~ 177 (579)
++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999998863 34778888999999999998886655 567888888888765
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=9.8e-15 Score=135.76 Aligned_cols=128 Identities=26% Similarity=0.305 Sum_probs=87.0
Q ss_pred cEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccC
Q 008072 28 MDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSS 107 (579)
Q Consensus 28 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 107 (579)
+.++++++.++ .+|..+. ++|++|+|++|.++ .+|..|..+++|++|+|++|.+.+..+..+.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46677777666 4554432 46777777777776 56666777777777777777777666666777777777777777
Q ss_pred CCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCC
Q 008072 108 GVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEG 159 (579)
Q Consensus 108 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 159 (579)
++++..+..|..+++|+.|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666667777777777777777775555556677777777777776653
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.4e-14 Score=131.09 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=77.6
Q ss_pred CcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
.+.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345666666655 344332 24566666666666644444556666666666666666544444456666666666666
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCch
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIP 162 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 162 (579)
|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66665555555666666666666666664444445556666666666666665444
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.7e-14 Score=132.08 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=115.6
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
.+.++++++++. .+|..+ .++|++|++++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 357888888876 456544 37899999999999977777789999999999999999977777789999999999999
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCc
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP 138 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 138 (579)
|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997777778999999999999999997666667899999999999999987665
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=134.53 Aligned_cols=128 Identities=21% Similarity=0.290 Sum_probs=90.5
Q ss_pred eEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecc
Q 008072 4 GHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 83 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 83 (579)
+.++++++++. .+|..+. ++|++|+|++|.++ .+|..+..+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666666655 4555432 56777777777776 56677777777777777777777666667777777777777777
Q ss_pred cCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCC
Q 008072 84 NFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTG 135 (579)
Q Consensus 84 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 135 (579)
++.+..+..+..+++|++|+|++|+++...+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666677777777777777777775555567777777777777776653
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.3e-16 Score=149.18 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=111.9
Q ss_pred hcCCCCCcEEEccCCcCCCCCch------hhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhC
Q 008072 21 LFMLRKLMDLNLGQNVLNGSIPA------EIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELG 94 (579)
Q Consensus 21 l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 94 (579)
+.....++.++++.+.+++.+|. .+..+++|++|+|++|.+++ +| .+..+++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45566777777777777766665 77788888888888888875 56 6777888888888888876 5666666
Q ss_pred CCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCc-hhhcCccccceeeecCCcCCCCchh----------
Q 008072 95 KLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIP-EFFGTLTELADLRLQGTLLEGPIPR---------- 163 (579)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~---------- 163 (579)
.+++|++|++++|++++ +| .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 67788888888888875 44 57778888888888888874322 4677888888888888887665553
Q ss_pred hhhcCCCCCeeE
Q 008072 164 SFRALNKLEDLR 175 (579)
Q Consensus 164 ~~~~l~~L~~L~ 175 (579)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 377888888886
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.6e-16 Score=147.23 Aligned_cols=143 Identities=24% Similarity=0.276 Sum_probs=81.8
Q ss_pred eEEEEeCcccccccch------hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcE
Q 008072 4 GHLKMRILVLLVTLPS------ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLIS 77 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 77 (579)
+.++++.+.+.+.+|+ .+..+++|++|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+..+++|++
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCE
Confidence 3444555555555554 56666666666666666664 44 5566666666666666665 45555555566666
Q ss_pred EEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcc-hhhhCCCCCcEEEccCCcCCCCCch----------hhcCccc
Q 008072 78 LSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIP-QEFANLKSLRILWASDNLFTGKIPE----------FFGTLTE 146 (579)
Q Consensus 78 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~----------~~~~l~~ 146 (579)
|++++|++.+ +| .+..+++|++|++++|++....+ ..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 98 L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 98 LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 6666666654 33 45556666666666666653221 3455666666666666665544332 2455566
Q ss_pred cceee
Q 008072 147 LADLR 151 (579)
Q Consensus 147 L~~L~ 151 (579)
|+.|+
T Consensus 176 L~~Ld 180 (198)
T 1ds9_A 176 LKKLD 180 (198)
T ss_dssp CSEEC
T ss_pred cEEEC
Confidence 66554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.5e-14 Score=130.95 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=101.3
Q ss_pred hhcCCCCCcEEEccCCcCCCCCchhhcCCC-CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCC
Q 008072 20 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLS-NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTS 98 (579)
Q Consensus 20 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 98 (579)
.+.++++|+.|++++|.++ .+|. +..+. +|++|+|++|.+++. ..|..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4667888999999999988 4554 44444 899999999998854 56888888999999998887554444578888
Q ss_pred CcEEEeccCCCCCCcch--hhhCCCCCcEEEccCCcCCCCCchh----hcCccccceeeecCCcCC
Q 008072 99 LQQLYIDSSGVTGSIPQ--EFANLKSLRILWASDNLFTGKIPEF----FGTLTELADLRLQGTLLE 158 (579)
Q Consensus 99 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~ 158 (579)
|++|++++|++. .+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|+++.|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 4555 6778888888888888887 44543 667777777777777654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=9.1e-13 Score=136.62 Aligned_cols=260 Identities=9% Similarity=0.065 Sum_probs=167.4
Q ss_pred CCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEE
Q 008072 24 LRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLY 103 (579)
Q Consensus 24 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 103 (579)
+..++.+.+.. .++..-..+|.++ +|+.+.|..+ ++..-..+|.++ +|+.+.+.. .+...-+..|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46677777764 3443445556664 6888887665 554445566664 688888775 45544556677788888888
Q ss_pred eccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCC
Q 008072 104 IDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAED 183 (579)
Q Consensus 104 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~ 183 (579)
+..|++.......|. +.+|+.+.|.++ +...-..+|..+++|+.+++..+ +.......|.+ .+|+.+.+. +.+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 887777744344454 578888888744 55444566777888888888764 33233345555 678888884 34555
Q ss_pred CChhhhcCCCCCCEEEcccCcCC-----CCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCC
Q 008072 184 STLDFLESQKSLSILSLRNCRVS-----GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELP 258 (579)
Q Consensus 184 ~~~~~l~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip 258 (579)
.....|.++++|+.+++.++.+. ......|..+++|+.++|. +.++..-..+|.++.+|+.+.|..| ++ .++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEc
Confidence 56677778888888888777654 2334567788888888888 4466555567888888888888554 44 344
Q ss_pred cccc--CCCCcEEEcccCCCCCCCCccccc--CCc-eEEeeccc
Q 008072 259 VNII--APNLIALDVSYNPLSGNLPRNFAK--GGL-SMNVIGSS 297 (579)
Q Consensus 259 ~~~~--~~~L~~Ldls~N~l~~~~p~~~~~--~~l-~l~l~~n~ 297 (579)
...+ + +|+.|++++|.+....+..|.. ..+ .+.+-.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3322 4 8888888888776554444443 222 35554443
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=7e-13 Score=137.46 Aligned_cols=247 Identities=10% Similarity=0.066 Sum_probs=189.5
Q ss_pred chhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCC
Q 008072 18 PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLT 97 (579)
Q Consensus 18 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 97 (579)
...|.++ +|+.+.|..+ ++..-..+|.++ +|+.+.|.. .++..-+.+|.++++|+.+++++|.+...-...+. ..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 4456665 7999999876 664556677774 699999986 67656667899999999999999988754444555 68
Q ss_pred CCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcC
Q 008072 98 SLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIG 177 (579)
Q Consensus 98 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 177 (579)
+|+.+.+..+ +...-..+|.++++|+.+++.++ +...-..+|.. .+|+.+.+. +.+.......|.++++|+.+.+.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 9999999844 66556678999999999999875 44344456666 789999994 44554556689999999999998
Q ss_pred CCCCC-----CCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCcc
Q 008072 178 DLSAE-----DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNN 252 (579)
Q Consensus 178 ~~~~~-----~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 252 (579)
++... ......|.++++|+.++|.+ .++..-..+|.++++|+.|+|..+ ++..-..+|.++ +|+.|++.+|.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 87655 35667889999999999984 466445567899999999999655 665666789999 99999999998
Q ss_pred CCCCCCcccc--C-CCCcEEEcccCCCC
Q 008072 253 LSGELPVNII--A-PNLIALDVSYNPLS 277 (579)
Q Consensus 253 l~~~ip~~~~--~-~~L~~Ldls~N~l~ 277 (579)
+.. ++...+ + .+++.|.+..+.+.
T Consensus 357 ~~~-l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 357 PPQ-VFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCB-CCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-cccccccCCCCCccEEEeCHHHHH
Confidence 874 443322 3 57888888877643
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.5e-13 Score=125.70 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred hcCCCCCcEEEeeccCCCCCCccccCCCc-CCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCC
Q 008072 45 IGQLSNMQYLSLGINNFTGRVPTELGNLT-KLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSL 123 (579)
Q Consensus 45 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 123 (579)
+..+++|++|++++|.++ .+|. +..+. +|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456678888888888887 3454 44444 888888888887754 567778888888888888875444445777888
Q ss_pred cEEEccCCcCCCCCch--hhcCccccceeeecCCcCCCCchh----hhhcCCCCCeeEcCCC
Q 008072 124 RILWASDNLFTGKIPE--FFGTLTELADLRLQGTLLEGPIPR----SFRALNKLEDLRIGDL 179 (579)
Q Consensus 124 ~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~l~~~ 179 (579)
++|++++|.+. .+|. .+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 88888888775 4454 56667777777777777653 333 2445555555544443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.4e-12 Score=118.46 Aligned_cols=108 Identities=27% Similarity=0.312 Sum_probs=77.7
Q ss_pred CcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
.+.|++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567777777777 4665442 6677788888877766677777777777777777777766555667777777777777
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCCCC
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTGKI 137 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 137 (579)
|++++..+..+..+++|++|+|++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 7777655556777777777777777776443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3.3e-12 Score=116.43 Aligned_cols=106 Identities=29% Similarity=0.308 Sum_probs=74.0
Q ss_pred CcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 27 LMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 27 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
-+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..+.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 357777777775 5665543 5677777777777766677777777777777777777755455566777777777777
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCC
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTG 135 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 135 (579)
|++.+..+..+..+++|++|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 77775555557777777777777777663
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=2.2e-12 Score=117.66 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=94.2
Q ss_pred eEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecc
Q 008072 4 GHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSN 83 (579)
Q Consensus 4 ~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 83 (579)
+.++++++.+. .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999874 6777664 89999999999999888999999999999999999999766667899999999999999
Q ss_pred cCCCCCchhhCCCCCCcEEEeccCCCCCC
Q 008072 84 NFFGPLPKELGKLTSLQQLYIDSSGVTGS 112 (579)
Q Consensus 84 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 112 (579)
++.+..+..+..+++|++|+|++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99976666699999999999999999853
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=3.9e-12 Score=115.51 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=95.4
Q ss_pred CCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEcc
Q 008072 50 NMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWAS 129 (579)
Q Consensus 50 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 129 (579)
..++|++++|.++ .+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4688999999998 5776663 789999999999998888889999999999999999997777778999999999999
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCc
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPI 161 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 161 (579)
+|++.+..+..+..+++|+.|+|++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999777777889999999999999887654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.1e-13 Score=137.17 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=77.5
Q ss_pred cCCcEEEeecccCCCCCchhh-CCCCCCcEEEeccCCCCCCcchhh-----hCCCCCcEEEccCCcCCCC----Cchhhc
Q 008072 73 TKLISLSFSSNNFFGPLPKEL-GKLTSLQQLYIDSSGVTGSIPQEF-----ANLKSLRILWASDNLFTGK----IPEFFG 142 (579)
Q Consensus 73 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~p~~~~ 142 (579)
++|++|+|++|.+.......+ ..+++|++|+|++|.++......+ ...++|+.|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432111111 123345555555555543222222 1245555666655555421 222334
Q ss_pred CccccceeeecCCcCCCC----chhhhhcCCCCCeeEcCCCCCCCCCh----hhhcCCCCCCEEEcccCcCCCCcchhhc
Q 008072 143 TLTELADLRLQGTLLEGP----IPRSFRALNKLEDLRIGDLSAEDSTL----DFLESQKSLSILSLRNCRVSGKIPDQLG 214 (579)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 214 (579)
..++|++|+|++|.+... ++..+...++|++|+|++|.+..... ..+...++|++|+|++|.+++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 455566666666655432 24455566677777777776655432 2334567788888888888755444443
Q ss_pred CC---C--CCCEEe--ccCCcCC
Q 008072 215 TF---A--KLQLLD--LSFNKLT 230 (579)
Q Consensus 215 ~l---~--~L~~L~--Ls~n~l~ 230 (579)
.+ . .|+.+. +..+.++
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 32 1 156665 5555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=4e-11 Score=122.00 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred EEEccCC-cCCCCCchhhcCCCCCcEEEeec-cCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 29 DLNLGQN-VLNGSIPAEIGQLSNMQYLSLGI-NNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 29 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
.++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4666 77777777777775 777766666777777777777777777776666777777777777777
Q ss_pred CCCCCCcchhhhCCCCCcEEEccCCcCCC
Q 008072 107 SGVTGSIPQEFANLKSLRILWASDNLFTG 135 (579)
Q Consensus 107 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 135 (579)
|++++..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777755444454444 7777777777663
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=2.3e-12 Score=132.33 Aligned_cols=62 Identities=18% Similarity=0.036 Sum_probs=30.4
Q ss_pred CCCcEEEeccCCCCCCcchhhhC-----CCCCcEEEccCCcCCCCCchhh-cCccccceeeecCCcCC
Q 008072 97 TSLQQLYIDSSGVTGSIPQEFAN-----LKSLRILWASDNLFTGKIPEFF-GTLTELADLRLQGTLLE 158 (579)
Q Consensus 97 ~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~ 158 (579)
+.|++|++++|.++......+.. .++|+.|+|++|.+.......+ ..+++|+.|+|++|.+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 45666666666665332222221 1466666666666543222221 23445566666666554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=5.4e-11 Score=121.07 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=92.1
Q ss_pred EEEEeCc-ccccccchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 5 HLKMRIL-VLLVTLPSELFMLRKLMDLNLGQ-NVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 5 ~L~l~~~-~l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
.++.+++ ++. .+|. |..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 666 4888 99999999999996 999987788999999999999999999998888999999999999999
Q ss_pred ccCCCCCchhhCCCCCCcEEEeccCCCCC
Q 008072 83 NNFFGPLPKELGKLTSLQQLYIDSSGVTG 111 (579)
Q Consensus 83 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 111 (579)
|++.+..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999976666666665 9999999999984
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=3.5e-09 Score=109.63 Aligned_cols=265 Identities=11% Similarity=0.024 Sum_probs=146.0
Q ss_pred chhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeeccc-------------
Q 008072 18 PSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN------------- 84 (579)
Q Consensus 18 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~------------- 84 (579)
..+|.++++|+.+.|..+ ++..-..+|.++++|+.++|..+ ++..-..+|.++.+|+.+.+..+-
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 345666777777777533 44333455666777777777543 332223355555555554433210
Q ss_pred --------CCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCCCCcEEEccCCcCCCCCchhhcCccccc--------
Q 008072 85 --------FFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLKSLRILWASDNLFTGKIPEFFGTLTELA-------- 148 (579)
Q Consensus 85 --------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-------- 148 (579)
....-...+.++.+|+.+.+..+... .....|..+.+|+.+.+..+ +.......+..+..|+
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 00011234566677777777544322 33445666677777766554 2212222333444444
Q ss_pred --------------eeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhc
Q 008072 149 --------------DLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLG 214 (579)
Q Consensus 149 --------------~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 214 (579)
.+.+.... .......+..+..|+.+.+..+. .......+..+..++.+.+....+. ...+.
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~ 294 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFY 294 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC---TTTTT
T ss_pred eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec---ccccc
Confidence 44433221 11122356777888888887653 2334455667777887777655432 23466
Q ss_pred CCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc--CCCCcEEEcccCCCCCCCCccccc-CCce-
Q 008072 215 TFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNLIALDVSYNPLSGNLPRNFAK-GGLS- 290 (579)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N~l~~~~p~~~~~-~~l~- 290 (579)
.+.+|+.+.+..+ ++..-..+|.++.+|+.++|..+ ++ .|....+ +.+|+.+++..| ++..-...|.. ..|+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 7788888888654 44344556778888888888644 44 4443332 578888888766 55333445544 5554
Q ss_pred EEeec
Q 008072 291 MNVIG 295 (579)
Q Consensus 291 l~l~~ 295 (579)
+.+..
T Consensus 371 i~lp~ 375 (394)
T 4fs7_A 371 VELPK 375 (394)
T ss_dssp EEEEG
T ss_pred EEECC
Confidence 55543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=2.4e-10 Score=116.39 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=63.1
Q ss_pred chhhhCCCCCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhh--cCCCCCeeEcCCC--C-CCCCCh--
Q 008072 114 PQEFANLKSLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFR--ALNKLEDLRIGDL--S-AEDSTL-- 186 (579)
Q Consensus 114 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~~--~-~~~~~~-- 186 (579)
...+..+|+|+.|+|++|.-. .++. + .+++|+.|+|..+.+.......+. .+++|+.|+|..+ . ......
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344455555555555554211 1121 2 145555555555554432222232 4555555554321 0 001000
Q ss_pred --hhh--cCCCCCCEEEcccCcCCCCcchhh---cCCCCCCEEeccCCcCCCC----CchhccCCCCCcEEEecCccCC
Q 008072 187 --DFL--ESQKSLSILSLRNCRVSGKIPDQL---GTFAKLQLLDLSFNKLTGQ----IPTSLQDLSTLQYLYLGNNNLS 254 (579)
Q Consensus 187 --~~l--~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 254 (579)
..+ ..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 111 235666667666666654332222 2355666666666666542 1222234456666666666554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=5.4e-10 Score=113.73 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=78.9
Q ss_pred cCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhh--CCCCCcEEEccC--CcCCCC-----Cch
Q 008072 69 LGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFA--NLKSLRILWASD--NLFTGK-----IPE 139 (579)
Q Consensus 69 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~-----~p~ 139 (579)
+..+++|+.|+|++|.-. .++. + .+++|++|+|..|.+.......+. .+++|+.|+|+. |...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344556666666555211 1222 2 255666666665555433223333 456666666542 111111 001
Q ss_pred hh--cCccccceeeecCCcCCCCchhhhh---cCCCCCeeEcCCCCCCCCChhh----hcCCCCCCEEEcccCcCCCCcc
Q 008072 140 FF--GTLTELADLRLQGTLLEGPIPRSFR---ALNKLEDLRIGDLSAEDSTLDF----LESQKSLSILSLRNCRVSGKIP 210 (579)
Q Consensus 140 ~~--~~l~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~Ls~n~l~~~~~ 210 (579)
.+ ..+++|+.|++.+|.+....+..+. .+++|+.|+|+.|.+....... +..+++|+.|+|++|.++....
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 2356677777766665533333332 3566777777666555432222 2345788888888887775544
Q ss_pred hhhcC-CCCCCEEeccCCc
Q 008072 211 DQLGT-FAKLQLLDLSFNK 228 (579)
Q Consensus 211 ~~~~~-l~~L~~L~Ls~n~ 228 (579)
..+.. + ...+++++++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 44432 2 3557787776
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.85 E-value=2.8e-08 Score=102.80 Aligned_cols=109 Identities=11% Similarity=0.173 Sum_probs=75.8
Q ss_pred hhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCC
Q 008072 163 RSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLST 242 (579)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 242 (579)
..|..+.+|+.+.+.+.. .......+.+++.|+.+.+. +.++......|.++.+|+.++|..+ ++..-..+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 356778888888886542 33455667788888888886 3454333456888889999988754 55444567888889
Q ss_pred CcEEEecCccCCCCCCcccc--CCCCcEEEcccCCC
Q 008072 243 LQYLYLGNNNLSGELPVNII--APNLIALDVSYNPL 276 (579)
Q Consensus 243 L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N~l 276 (579)
|+.+.|..+ ++ .|....+ +.+|+.+++.++..
T Consensus 336 L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 999988654 44 4554433 68899998887753
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=3.4e-08 Score=102.13 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=132.1
Q ss_pred chhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEeccCCCCCCcchhhhCCC
Q 008072 42 PAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDSSGVTGSIPQEFANLK 121 (579)
Q Consensus 42 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 121 (579)
..+|.++++|+.+.+..+... .-..+|.++.+|+.+.+..+ +.......+.++..|+.+.+..+... +........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 456777888888888765332 44457778888888888765 33334455677777777776554432 233334456
Q ss_pred CCcEEEccCCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcc
Q 008072 122 SLRILWASDNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLR 201 (579)
Q Consensus 122 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls 201 (579)
+|+.+.+.... .......+..+..|+.+.+..+... .....+..+..++.+.+.... .....+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred CCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---eccccccccccccccccc
Confidence 77777765432 2122345566677777777655432 233456666777766655432 223345566777777776
Q ss_pred cCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc--CCCCcEEEcccC
Q 008072 202 NCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNLIALDVSYN 274 (579)
Q Consensus 202 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N 274 (579)
++ ++..-..+|.++.+|+.++|..+ ++..-..+|.++.+|+.+.+..+ ++ .|....+ +.+|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 54 44233445777777777777643 54344556777777887777655 44 4443332 577777777654
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=2.3e-07 Score=95.82 Aligned_cols=265 Identities=10% Similarity=0.088 Sum_probs=157.7
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCc---CCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEE
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNV---LNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLS 79 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 79 (579)
|+.+.+... +...-..+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++..-..+|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 666766543 444445668889999999987763 44333456667777777666543 3323334566667777776
Q ss_pred eecccCCCCCchhhCCCCCCcEEEeccCC---------------------CCCCcchhhhCCCCCcEEEccCCcCC----
Q 008072 80 FSSNNFFGPLPKELGKLTSLQQLYIDSSG---------------------VTGSIPQEFANLKSLRILWASDNLFT---- 134 (579)
Q Consensus 80 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~---------------------l~~~~~~~l~~l~~L~~L~L~~n~l~---- 134 (579)
+..+ +.......+..+.+|+.+.+..+- +.......+..+.+|+......+...
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~ 222 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDN 222 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSS
T ss_pred ccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccc
Confidence 6543 222223334455555555543221 00011223444445544433221110
Q ss_pred --------------------------------CCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCC
Q 008072 135 --------------------------------GKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAE 182 (579)
Q Consensus 135 --------------------------------~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~ 182 (579)
..-..+|..+.+|+.+.+..+... .....|.++++|+.+.+.. .+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~ 300 (394)
T 4gt6_A 223 VLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT 300 (394)
T ss_dssp CEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC
T ss_pred eeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc
Confidence 011235667788999988765432 3345788999999999963 455
Q ss_pred CCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc
Q 008072 183 DSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII 262 (579)
Q Consensus 183 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~ 262 (579)
......|.++.+|+.++|..+ ++.....+|.++.+|+.+.|..+ ++..-..+|.++.+|+.+++.++.... .....
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~ 376 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAIST 376 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBC
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhc
Confidence 566778899999999999764 55344567899999999999755 665566789999999999999876431 11223
Q ss_pred CCCCcEEEcccCCC
Q 008072 263 APNLIALDVSYNPL 276 (579)
Q Consensus 263 ~~~L~~Ldls~N~l 276 (579)
+.+|+.+.+..|.+
T Consensus 377 ~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 377 DSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCC----------
T ss_pred cCCCCEEEeCCCCE
Confidence 57888888876654
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.48 E-value=4.3e-06 Score=85.70 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=115.9
Q ss_pred hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCC
Q 008072 20 ELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSL 99 (579)
Q Consensus 20 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 99 (579)
++....+|+.+.+... ++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-...+.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 3444556666666542 34233455666777777777543 442333455554 4555555432 22111122222 245
Q ss_pred cEEEeccCC---------------------CCCCcchhhhCCCCCcEEEccCCcCCC------------CCchhhcCccc
Q 008072 100 QQLYIDSSG---------------------VTGSIPQEFANLKSLRILWASDNLFTG------------KIPEFFGTLTE 146 (579)
Q Consensus 100 ~~L~L~~n~---------------------l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~~~~l~~ 146 (579)
+.+.+..+- +.......+..+.+++.+.+..+.... .....+.....
T Consensus 116 ~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred ccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 555543221 111123345566777777766543221 11111222333
Q ss_pred cceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCcchhhcCCCCCCEEeccC
Q 008072 147 LADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKIPDQLGTFAKLQLLDLSF 226 (579)
Q Consensus 147 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 226 (579)
+..+.+..... ......+..+.+|+.+.+... +.......+.++..|+.+.+..+ ++..-...+..+.+|+.+++..
T Consensus 196 ~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 196 GTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 33333322211 122234455566666665432 22333444555666666666544 3322334455666666666643
Q ss_pred CcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc--CCCCcEEEcccC
Q 008072 227 NKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNLIALDVSYN 274 (579)
Q Consensus 227 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N 274 (579)
+ ++......|.++.+|+.+.+.++.++ .|+...+ +.+|+.++|..+
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT
T ss_pred c-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc
Confidence 3 33233345666666666666666555 3433322 466666666543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=2.1e-08 Score=91.99 Aligned_cols=93 Identities=20% Similarity=0.098 Sum_probs=44.2
Q ss_pred chhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCcEEEeeccCCCCC----CccccCCCcCCcEEEeecccCCCC
Q 008072 18 PSELFMLRKLMDLNLGQN-VLNGS----IPAEIGQLSNMQYLSLGINNFTGR----VPTELGNLTKLISLSFSSNNFFGP 88 (579)
Q Consensus 18 p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~ 88 (579)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334455566666666666 55432 233344455566666666655421 122233334555555555554322
Q ss_pred ----CchhhCCCCCCcEEEe--ccCCCC
Q 008072 89 ----LPKELGKLTSLQQLYI--DSSGVT 110 (579)
Q Consensus 89 ----~p~~l~~l~~L~~L~L--~~n~l~ 110 (579)
+...+...++|++|+| ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2223333444555555 444444
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=1.8e-07 Score=90.39 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=55.1
Q ss_pred cCCCCCcEEEeeccCCCC--CCccccCCCcCCcEEEeecccCCCCCchhhCCCC--CCcEEEeccCCCCCCcc-------
Q 008072 46 GQLSNMQYLSLGINNFTG--RVPTELGNLTKLISLSFSSNNFFGPLPKELGKLT--SLQQLYIDSSGVTGSIP------- 114 (579)
Q Consensus 46 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~------- 114 (579)
.++++|++|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777888888887775 3445556777888888888877654 2233333 78888888888876544
Q ss_pred hhhhCCCCCcEEE
Q 008072 115 QEFANLKSLRILW 127 (579)
Q Consensus 115 ~~l~~l~~L~~L~ 127 (579)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467788888876
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=5.3e-08 Score=94.09 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=76.2
Q ss_pred hcCCCCCcE--EEeeccCCC---CCCccccCCCcCCcEEEeecccCCC--CCchhhCCCCCCcEEEeccCCCCCCcchhh
Q 008072 45 IGQLSNMQY--LSLGINNFT---GRVPTELGNLTKLISLSFSSNNFFG--PLPKELGKLTSLQQLYIDSSGVTGSIPQEF 117 (579)
Q Consensus 45 l~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 117 (579)
+...+.|+. ++++.|+.. ..++....++++|+.|+|++|++.+ .+|..+..+++|+.|+|++|++.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 344445555 667777433 1122222568899999999999987 3456677899999999999999964 334
Q ss_pred hCCC--CCcEEEccCCcCCCCCc-------hhhcCccccceeee
Q 008072 118 ANLK--SLRILWASDNLFTGKIP-------EFFGTLTELADLRL 152 (579)
Q Consensus 118 ~~l~--~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~l 152 (579)
..+. +|++|+|++|.+.+.+| ..+..+++|+.||-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4444 99999999999987665 24667888888873
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=2.8e-07 Score=84.45 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=8.9
Q ss_pred hhCCCCCcEEEccCC-cCC
Q 008072 117 FANLKSLRILWASDN-LFT 134 (579)
Q Consensus 117 l~~l~~L~~L~L~~n-~l~ 134 (579)
+...++|++|+|++| .+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 344455555555555 443
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.23 E-value=2.1e-05 Score=80.49 Aligned_cols=261 Identities=10% Similarity=0.036 Sum_probs=159.0
Q ss_pred eeEEEEeCcccccccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 3 HGHLKMRILVLLVTLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 3 L~~L~l~~~~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
|+.+.+.. +++..-..+|.+|.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++..-..+|.. .+|+.+.+..
T Consensus 48 i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 48 ISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp CSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCT
T ss_pred CEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCC
Confidence 55666543 344444556888899999999754 553444556665 5676666543 33222223433 3566666543
Q ss_pred cc---------------------CCCCCchhhCCCCCCcEEEeccCCCCC------------CcchhhhCCCCCcEEEcc
Q 008072 83 NN---------------------FFGPLPKELGKLTSLQQLYIDSSGVTG------------SIPQEFANLKSLRILWAS 129 (579)
Q Consensus 83 n~---------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~~L~~L~L~ 129 (579)
+- +...-...+..+.+++.+.+..+.... .....+.....+..+.+.
T Consensus 123 ~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (379)
T 4h09_A 123 ATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIP 202 (379)
T ss_dssp TCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECC
T ss_pred ccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccc
Confidence 21 111122334566777777766544321 122233445556666554
Q ss_pred CCcCCCCCchhhcCccccceeeecCCcCCCCchhhhhcCCCCCeeEcCCCCCCCCChhhhcCCCCCCEEEcccCcCCCCc
Q 008072 130 DNLFTGKIPEFFGTLTELADLRLQGTLLEGPIPRSFRALNKLEDLRIGDLSAEDSTLDFLESQKSLSILSLRNCRVSGKI 209 (579)
Q Consensus 130 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 209 (579)
..... .....+....+|+.+.+..+ +.......+..+..|+.+.+.++ +.......+.++.+|+.+.+..+ +....
T Consensus 203 ~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~ 278 (379)
T 4h09_A 203 STVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVP 278 (379)
T ss_dssp TTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEEC
T ss_pred cceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecc
Confidence 43222 23345566778888877654 23233456788889999988764 45556667788889999998654 44333
Q ss_pred chhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccCCCCCCcccc--CCCCcEEEcccC
Q 008072 210 PDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNLSGELPVNII--APNLIALDVSYN 274 (579)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~--~~~L~~Ldls~N 274 (579)
...|..+++|+.+++.++.++..-..+|.++.+|+.+.|..+ ++ .|....+ +.+|+.+.+..+
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 456888999999999988887666678899999999999754 44 4544332 578888777543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2.6e-06 Score=76.42 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=68.7
Q ss_pred ccchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCcEEEeeccC-CCCCCccccCCC----cCCcEEEeeccc-CCCCC
Q 008072 16 TLPSELFMLRKLMDLNLGQNVLNGSIPAEIGQLSNMQYLSLGINN-FTGRVPTELGNL----TKLISLSFSSNN-FFGPL 89 (579)
Q Consensus 16 ~lp~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~ 89 (579)
.+|.....-.+|+.||+++|.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. +++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 345433233469999999999887666778889999999999985 664333345554 479999999985 65444
Q ss_pred chhhCCCCCCcEEEeccCCC
Q 008072 90 PKELGKLTSLQQLYIDSSGV 109 (579)
Q Consensus 90 p~~l~~l~~L~~L~L~~n~l 109 (579)
-..+..+++|++|++++|.-
T Consensus 132 l~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTT
T ss_pred HHHHhcCCCCCEEECCCCCC
Confidence 45577889999999999863
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1.9e-06 Score=77.28 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=66.4
Q ss_pred CCCcEEEeeccCCCCCCccccCCCcCCcEEEeeccc-CCCCCchhhCCC----CCCcEEEeccCC-CCCCcchhhhCCCC
Q 008072 49 SNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNN-FFGPLPKELGKL----TSLQQLYIDSSG-VTGSIPQEFANLKS 122 (579)
Q Consensus 49 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 122 (579)
.+|++|||+++.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999886555567899999999999995 554333445554 479999999985 77555566788999
Q ss_pred CcEEEccCCcC
Q 008072 123 LRILWASDNLF 133 (579)
Q Consensus 123 L~~L~L~~n~l 133 (579)
|++|+|++|.-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=0.00026 Score=64.54 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=28.2
Q ss_pred CCCCCcEEEccCC-cCCC----CCchhhcCCCCCcEEEeeccCCCC----CCccccCCCcCCcEEEeecccCC
Q 008072 23 MLRKLMDLNLGQN-VLNG----SIPAEIGQLSNMQYLSLGINNFTG----RVPTELGNLTKLISLSFSSNNFF 86 (579)
Q Consensus 23 ~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~ 86 (579)
+-+.|+.|+|++| .+.. .+...+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|++|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445555555553 4432 122333444455555555555541 12222233344555555555443
No 163
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=96.79 E-value=0.00022 Score=45.54 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=21.8
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
+.+.|+|+++|+++.+++++.++++++|||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 466889999998887666666666666654
No 164
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.76 E-value=0.00025 Score=46.69 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=19.9
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccccccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKDSSSH 565 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 565 (579)
..+.|++.++|+++++++++++.++++|||+.+.
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 3445666667666665555555556666665543
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.72 E-value=0.00026 Score=46.45 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=20.4
Q ss_pred ccceEEEEehhHHHHHHHHHHHHHhhhccccccc
Q 008072 532 HVGKIVGITVGCAAALVIISSVFYLWWTKDSSSH 565 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 565 (579)
..+.|++.++|+++++++++++.++++|||+...
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4455666677766665555555556666665443
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.72 E-value=0.0013 Score=59.90 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=4.6
Q ss_pred CCCcEEEecc
Q 008072 97 TSLQQLYIDS 106 (579)
Q Consensus 97 ~~L~~L~L~~ 106 (579)
+.|++|+|++
T Consensus 41 ~~L~~L~L~~ 50 (197)
T 1pgv_A 41 TDLKEVNINN 50 (197)
T ss_dssp SSCCEEECTT
T ss_pred CCccEEECCC
Confidence 4444444444
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0049 Score=52.26 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=28.1
Q ss_pred EEEcccCcCC-CCcchhhcCCCCCCEEeccCCcCCCCCchhccCCCCCcEEEecCccC
Q 008072 197 ILSLRNCRVS-GKIPDQLGTFAKLQLLDLSFNKLTGQIPTSLQDLSTLQYLYLGNNNL 253 (579)
Q Consensus 197 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 253 (579)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23443222 3456666666666544444455555555555555544
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.71 E-value=0.009 Score=50.59 Aligned_cols=56 Identities=25% Similarity=0.292 Sum_probs=36.0
Q ss_pred EEEccCCcCC-CCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeecccCC
Q 008072 29 DLNLGQNVLN-GSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSSNNFF 86 (579)
Q Consensus 29 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 86 (579)
.++-+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 24554322 25777777777777555556677777777777777653
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=94.88 E-value=0.003 Score=41.37 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=16.5
Q ss_pred cceEEEEehhHHHHHHHHHHHHHhhhccccc
Q 008072 533 VGKIVGITVGCAAALVIISSVFYLWWTKDSS 563 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 563 (579)
...|+++++| +++++++++++++|+|||+.
T Consensus 11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 4457777788 33444444444555555543
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=91.43 E-value=0.029 Score=36.59 Aligned_cols=13 Identities=8% Similarity=-0.066 Sum_probs=5.4
Q ss_pred ceEEEEehhHHHH
Q 008072 534 GKIVGITVGCAAA 546 (579)
Q Consensus 534 ~~~~g~~~g~~~~ 546 (579)
..|++.+++++++
T Consensus 13 ~~I~~~vv~Gv~l 25 (41)
T 2k9y_A 13 LAVIGGVAVGVVL 25 (41)
T ss_dssp THHHHHHHHHHHH
T ss_pred EEEEeehhHHHHH
Confidence 3344444444443
No 171
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=83.70 E-value=0.14 Score=31.30 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=16.3
Q ss_pred cceEEEEehhHHHHHHHHHHHHHhh
Q 008072 533 VGKIVGITVGCAAALVIISSVFYLW 557 (579)
Q Consensus 533 ~~~~~g~~~g~~~~~~~~~~~~~~~ 557 (579)
.+.++|+++|.+++++++++++++|
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHHHHHHHHHHhhe
Confidence 3567788888877755555555444
No 172
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=82.34 E-value=0.073 Score=32.87 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=10.4
Q ss_pred EEEEehhHHHHHHHHHHHHHhhhccc
Q 008072 536 IVGITVGCAAALVIISSVFYLWWTKD 561 (579)
Q Consensus 536 ~~g~~~g~~~~~~~~~~~~~~~~~~~ 561 (579)
|+..++| +.++++++..+.+++|||
T Consensus 10 IaagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred eHHHHHH-HHHHHHHHHHhheEEeec
Confidence 3333444 333333333344455555
No 173
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=81.21 E-value=0.83 Score=32.32 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=8.3
Q ss_pred EehhHHHHHHHHHHH
Q 008072 539 ITVGCAAALVIISSV 553 (579)
Q Consensus 539 ~~~g~~~~~~~~~~~ 553 (579)
++.|+++.+++++.+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 466666655554444
No 174
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=77.10 E-value=17 Score=36.27 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=48.2
Q ss_pred ccCCCCCceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEEEEEecCCeEEEEEEe
Q 008072 414 YGLGLENGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHFFW 493 (579)
Q Consensus 414 ~~~~~~~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~~~~ 493 (579)
|.++|++|+|.|++.+-+-. .-.|..+++..+. ..+| .-....|.|.+.++.+.+++.-
T Consensus 80 f~v~~~~g~Y~v~v~~g~~~-------------~~~v~~e~~~~~~-----~~~g---~~~~~~~~v~~~~g~~~l~~~~ 138 (375)
T 2o14_A 80 FNVDLPNGLYEVKVTLGNTA-------------RASVAAEGVFQVI-----NMTG---DGAEDTFQIPVTDGQLNLLVTE 138 (375)
T ss_dssp EEEECCSEEEEEEEEESSCS-------------EEEEEETTEEEEE-----EEES---TTCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEcCCCceEEEEEecCCc-------------ceEEEEcceEEEE-----ecCC---CcEEEEEEEEeeCCeEEEeeee
Confidence 77899999999998875541 1234445543222 2223 3345678999999999888521
Q ss_pred cCCCCccccCCCccCceeeeEEEEecc
Q 008072 494 AGKGTCCIPFQGTYGPLVSAIHASQVS 520 (579)
Q Consensus 494 ~~~g~~~~~~~~~~~~~ln~iei~~~~ 520 (579)
..- +. -+.+++|||.+..
T Consensus 139 ~~~--------g~-~~~l~~i~v~~~~ 156 (375)
T 2o14_A 139 GKA--------GT-AFTLSALKIKKLS 156 (375)
T ss_dssp SST--------TS-CCEEEEEEEEEEE
T ss_pred ccC--------CC-CcccceEEEeccC
Confidence 111 11 2679999998753
No 175
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=73.82 E-value=0.84 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=10.3
Q ss_pred ccceEEEEehhHHHH
Q 008072 532 HVGKIVGITVGCAAA 546 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~ 546 (579)
++++++|..+|++++
T Consensus 15 srga~iGL~v~gVai 29 (43)
T 2llm_A 15 NKGAIIGLMVGGVVI 29 (43)
Confidence 456788888776654
No 176
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=59.14 E-value=52 Score=27.42 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=52.9
Q ss_pred cccccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEEEEEecCCeEEE
Q 008072 411 LRYYGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 489 (579)
Q Consensus 411 l~~~~~~~~-~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i 489 (579)
++ |.+.++ .|.|.+++.++.-. .+.|.++|++||..+...+.+.. +|+...-......|.-+.|.-.|
T Consensus 42 v~-~~V~v~~aG~Y~l~~ryan~~---------~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~~~~v~L~aG~ntI 110 (144)
T 2w47_A 42 IE-WNVNAPSSGSYALIFRYANGT---------TANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEAGIVANLNQGNNVI 110 (144)
T ss_dssp EE-EEEEESSSEEEEEEEEEECCS---------SSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEEEEEEEECSEEEEE
T ss_pred EE-EEEECCCCcEEEEEEEEECCC---------CCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEEEEEEEECCCccEE
Confidence 44 667776 57999999887531 13578899999987534444432 23222222233345555555455
Q ss_pred EEEecCCCCccccCCCccCceeeeEEEEecccC
Q 008072 490 HFFWAGKGTCCIPFQGTYGPLVSAIHASQVSTG 522 (579)
Q Consensus 490 ~~~~~~~g~~~~~~~~~~~~~ln~iei~~~~~~ 522 (579)
++.-. + ..+ .+.|.-|+|.|....
T Consensus 111 ~l~~~--~-----~~g--~~niD~i~v~~~~~~ 134 (144)
T 2w47_A 111 RATAI--A-----SDG--GPNVDYLKVFSANAF 134 (144)
T ss_dssp EEEEC--S-----TTC--CCEEEEEEEEECTTS
T ss_pred EEEEe--C-----CCC--CEEEeEEEEEeCCCC
Confidence 54211 1 112 488999999885543
No 177
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=55.09 E-value=46 Score=27.91 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=49.7
Q ss_pred ccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEEEEEecCCeEEEEEE
Q 008072 414 YGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHFF 492 (579)
Q Consensus 414 ~~~~~~-~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~~~ 492 (579)
|.+.++ .|.|.+++.++.-. .+.|.++|++||..+ ..+.+.. +|+-..--.....|.-+.|.-.|++.
T Consensus 43 ~~V~v~~aG~Y~l~~ryang~---------~~~r~~~l~VNG~~~-~~v~~p~-Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 43 WSLSAASAKTYTAQIRFGNGG---------TSARRATVVVNDSQI-KTLDFPT-NSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp EEEEESSCEEEEEEEEEECCS---------SSCCCEEEEETTEEE-EEECCCC-CSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred EEEECCCCeEEEEEEEEECCC---------CCCeEEEEEECCeEe-eEEEecC-CCCCCeeEEEEEEEEECCCceEEEEE
Confidence 666666 57999999886321 135789999999876 3344332 23222222233345555555455542
Q ss_pred ecCCCCccccCCCccCceeeeEEEEecc
Q 008072 493 WAGKGTCCIPFQGTYGPLVSAIHASQVS 520 (579)
Q Consensus 493 ~~~~g~~~~~~~~~~~~~ln~iei~~~~ 520 (579)
-.+ +...+.|.-|+|.+..
T Consensus 112 ~~~---------~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 112 AET---------ADGLANIDSIRVTGNG 130 (145)
T ss_dssp ECS---------TTCCCEEEEEEECSTT
T ss_pred Eec---------CcCCEEEEEEEEEcCC
Confidence 110 1124788899987643
No 178
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=52.93 E-value=75 Score=27.02 Aligned_cols=96 Identities=16% Similarity=0.294 Sum_probs=52.4
Q ss_pred cc-CCCC-CceEEEEEeeeeeeecCCcCcc-cccceEEEEEEcCeEecccCchhhhhCCCCceEEEEEEEEecCCeEEEE
Q 008072 414 YG-LGLE-NGKYRIDLHFAEITMEDSLSWK-GLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIH 490 (579)
Q Consensus 414 ~~-~~~~-~g~y~v~l~F~e~~~~~~~~~~-~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~ 490 (579)
|. +.++ .|.|.|++.|+.-.....-.|. ....|..+|++||... ..++... ++.....-.....|.-..|.=.|+
T Consensus 51 f~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~-~~v~fp~-Tg~W~~~~~~tv~V~L~aG~NtI~ 128 (156)
T 2wz8_A 51 FNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE-KGHYFFN-TRGWNTYRTDIIDVYLNAGNNTIR 128 (156)
T ss_dssp EEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC-EEEEECC-CSSTTCCEEEEEEEEECSEEEEEE
T ss_pred EEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee-eEEEeCC-CCCCCcceEEEEEEEECCCceEEE
Confidence 65 6665 5799999999765311000011 1247999999999763 2333322 232333333444555556666666
Q ss_pred EEecCCCCccccCCCccCceeeeEEEEec
Q 008072 491 FFWAGKGTCCIPFQGTYGPLVSAIHASQV 519 (579)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~ln~iei~~~ 519 (579)
|.-. ...-+.|-|-.|+|.|.
T Consensus 129 ~~~~--------~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 129 FYNG--------TSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EECC--------STTCBCCEEEEEEEEC-
T ss_pred EEec--------CCCCCCcEEEEEEEecc
Confidence 5211 01224688888988764
No 179
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=51.44 E-value=49 Score=26.82 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=40.7
Q ss_pred cccccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEecccCchhhhhCCCCceEEEEEEEEecCCeEEE
Q 008072 411 LRYYGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEI 489 (579)
Q Consensus 411 l~~~~~~~~-~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i 489 (579)
++ |.+.++ .|.|.++++++.-. .+.|.++|++||..+...+.+.. +|+-..-......|.-+.|.-.|
T Consensus 41 v~-~~V~v~~aG~Y~l~~rya~~~---------~~~~~~~l~VnG~~~~~~v~~p~-tg~W~~w~~~~~~v~L~aG~ntI 109 (127)
T 2vzp_A 41 VE-WTVTVPSAGTYDVVVRYANGT---------TTSRPLDFSVNGSISASGVAFGS-TGTWPAWTTKTVRVTLAAGVNKI 109 (127)
T ss_dssp EE-EEEEESSSEEEEEEEEEECCS---------SSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEEEEEEEECSEEEEE
T ss_pred EE-EEEEcCCCCEEEEEEEEEcCC---------CCCeEEEEEECCEEeeeEEEecC-CCCCCceEEEEEEEEECCCceEE
Confidence 44 666676 57999999887632 13577899999987533344322 23223333333445555555555
Q ss_pred EE
Q 008072 490 HF 491 (579)
Q Consensus 490 ~~ 491 (579)
++
T Consensus 110 ~l 111 (127)
T 2vzp_A 110 KA 111 (127)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 180
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=49.91 E-value=3.1 Score=28.45 Aligned_cols=15 Identities=7% Similarity=-0.215 Sum_probs=7.4
Q ss_pred ccceEEEEehhHHHH
Q 008072 532 HVGKIVGITVGCAAA 546 (579)
Q Consensus 532 ~~~~~~g~~~g~~~~ 546 (579)
..++|+++++|++.+
T Consensus 8 p~WiIi~svl~GLLL 22 (54)
T 2l8s_A 8 PLWVILLSAFAGLLL 22 (54)
T ss_dssp CTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 345555555554443
No 181
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=53.45 E-value=3.9 Score=25.65 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=4.4
Q ss_pred Hhhhccccc
Q 008072 555 YLWWTKDSS 563 (579)
Q Consensus 555 ~~~~~~~~~ 563 (579)
++.|+|++|
T Consensus 29 i~~w~qKPr 37 (39)
T 2l6w_A 29 IMLWQKKPR 37 (39)
Confidence 344555543
No 182
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=47.28 E-value=6.6 Score=25.67 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=17.7
Q ss_pred EEehhHHHHHHHHHHHHHhhhcccccccee
Q 008072 538 GITVGCAAALVIISSVFYLWWTKDSSSHIR 567 (579)
Q Consensus 538 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (579)
+|++|++..++++++++..++.-.|++..+
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 344455555555566666677777766554
No 183
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=46.26 E-value=4.8 Score=26.05 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=5.8
Q ss_pred cceEEEEehhHHH
Q 008072 533 VGKIVGITVGCAA 545 (579)
Q Consensus 533 ~~~~~g~~~g~~~ 545 (579)
.++|++.++|++.
T Consensus 10 ~wiIi~s~l~GLl 22 (42)
T 2k1a_A 10 IWWVLVGVLGGLL 22 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4454444444433
No 184
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=40.47 E-value=65 Score=26.71 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=48.2
Q ss_pred ccCCCC-CceEEEEEeeeeeeecCCcCcccccceEEEEEEcCeEe-cccCchhhhhCCCCceEEEEEEEEecCCeEEEEE
Q 008072 414 YGLGLE-NGKYRIDLHFAEITMEDSLSWKGLGRRVFDVYIQGERV-LRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHF 491 (579)
Q Consensus 414 ~~~~~~-~g~y~v~l~F~e~~~~~~~~~~~~~~r~F~V~i~~~~~-~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~~ 491 (579)
|...++ .|.|.+++.++.-. ...|..+|++||..+ ...+++.. +|+...--.....|.-+.|.-.|++
T Consensus 43 ~~V~v~~aG~Y~l~~ryang~---------~~~r~~~l~VNG~~~g~~~v~~p~-Tg~W~~w~t~~~~v~L~aG~ntI~l 112 (139)
T 2w87_A 43 WAIDATSSGRRTLTIRYANGG---------TANRNGSLVINGGSNGNYTVSLPT-TGAWTTWQTATIDVDLVQGNNIVQL 112 (139)
T ss_dssp EEEEESSCEEEEEEEEEECCS---------SSCCCEEEEETTTTTCEEEECCCC-CSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred EEEECCCCcEEEEEEEEECCC---------CCCceEEEEECCEEcceeEEEecC-CCCCCccEEEEEEEEECCCceEEEE
Confidence 666666 47999999886532 124788999999764 23444432 2323333333334555555544554
Q ss_pred EecCCCCccccCCCccCceeeeEEEEe
Q 008072 492 FWAGKGTCCIPFQGTYGPLVSAIHASQ 518 (579)
Q Consensus 492 ~~~~~g~~~~~~~~~~~~~ln~iei~~ 518 (579)
.-. .+...+.|.-|+|.+
T Consensus 113 ~~~---------~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 113 SAT---------TAEGLPNIDSLSVVG 130 (139)
T ss_dssp EES---------STTCCCEEEEEEEES
T ss_pred EEc---------CCCCCEEEEEEEEec
Confidence 111 011247888888876
No 185
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=39.49 E-value=13 Score=22.40 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=5.2
Q ss_pred HHhhhcccc
Q 008072 554 FYLWWTKDS 562 (579)
Q Consensus 554 ~~~~~~~~~ 562 (579)
.|++||.||
T Consensus 26 tflywrgrr 34 (40)
T 2l9u_A 26 TFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHH
T ss_pred eeEEEcccc
Confidence 455666554
No 186
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.67 E-value=66 Score=24.98 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=25.6
Q ss_pred CCCCCchhhcCCCCCcEEEeeccCCCCCCccccCCCcCCcEEEeec
Q 008072 37 LNGSIPAEIGQLSNMQYLSLGINNFTGRVPTELGNLTKLISLSFSS 82 (579)
Q Consensus 37 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 82 (579)
++..-...|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34334455666666766666553 3323344666666666666654
No 187
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.23 E-value=30 Score=23.66 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=6.8
Q ss_pred cceEEEEehhHHHH
Q 008072 533 VGKIVGITVGCAAA 546 (579)
Q Consensus 533 ~~~~~g~~~g~~~~ 546 (579)
.++|++.++|++.+
T Consensus 12 ~wiIi~svl~GLll 25 (54)
T 2knc_A 12 IWWVLVGVLGGLLL 25 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555554443
No 188
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=39.46 E-value=9 Score=30.45 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=8.5
Q ss_pred ceEEEEehhHHHH
Q 008072 534 GKIVGITVGCAAA 546 (579)
Q Consensus 534 ~~~~g~~~g~~~~ 546 (579)
+.++|..+|++++
T Consensus 30 ~a~igL~v~~vai 42 (122)
T 2lp1_A 30 GAIIGLMVGGVVI 42 (122)
Confidence 3577777776654
No 189
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=30.72 E-value=10 Score=37.36 Aligned_cols=11 Identities=0% Similarity=-0.170 Sum_probs=0.0
Q ss_pred eEEEEehhHHH
Q 008072 535 KIVGITVGCAA 545 (579)
Q Consensus 535 ~~~g~~~g~~~ 545 (579)
.|+|+++|+++
T Consensus 282 ~~~~i~~~~~~ 292 (348)
T 1s7q_A 282 SNMATVAVLVV 292 (348)
T ss_dssp -----------
T ss_pred cEEEEEeehhh
Confidence 45677766544
No 190
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.45 E-value=83 Score=24.37 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCCCCccccCCCcCCcEEEeecccCCCCCchhhCCCCCCcEEEecc
Q 008072 61 FTGRVPTELGNLTKLISLSFSSNNFFGPLPKELGKLTSLQQLYIDS 106 (579)
Q Consensus 61 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 106 (579)
++..-..+|.++++|+.+.|-.+ +..+-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34334456677777777777653 3333344566666666666643
No 191
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=20.80 E-value=21 Score=40.13 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=0.0
Q ss_pred cceEEEEehhHHHH
Q 008072 533 VGKIVGITVGCAAA 546 (579)
Q Consensus 533 ~~~~~g~~~g~~~~ 546 (579)
.++++++++|.+++
T Consensus 704 ~~aii~il~~~~~l 717 (880)
T 1q55_A 704 LPIILVILGSVLAL 717 (880)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544433
No 192
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=20.36 E-value=62 Score=21.23 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHhhhcc
Q 008072 541 VGCAAALVIISSVFYLWWTK 560 (579)
Q Consensus 541 ~g~~~~~~~~~~~~~~~~~~ 560 (579)
+|.+++.+++.+.+|-|.||
T Consensus 25 IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 25 IGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45444433334445445554
Done!