Query 008073
Match_columns 578
No_of_seqs 155 out of 695
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 2E-125 6E-130 1044.4 54.5 550 3-572 15-577 (581)
2 4eql_A 4-substituted benzoates 100.0 2E-125 8E-130 1046.1 44.3 554 2-571 12-578 (581)
3 4b2g_A GH3-1 auxin conjugating 100.0 3E-124 1E-128 1037.9 48.2 557 3-572 18-585 (609)
4 3qov_A Phenylacetate-coenzyme 99.8 3.5E-19 1.2E-23 191.4 27.9 385 10-533 10-421 (436)
5 2y27_A Phenylacetate-coenzyme 99.8 4.4E-20 1.5E-24 198.6 17.8 379 16-532 21-422 (437)
6 2y4o_A Phenylacetate-coenzyme 99.8 1.3E-18 4.3E-23 187.5 28.9 379 16-532 23-426 (443)
7 3hgu_A EHPF; phenazine, antibi 99.4 2.7E-13 9.1E-18 142.3 12.1 87 20-117 21-117 (369)
8 3etc_A AMP-binding protein; ad 99.3 2.2E-10 7.4E-15 127.8 21.5 130 293-445 339-496 (580)
9 3e7w_A D-alanine--poly(phospho 99.2 5.7E-09 1.9E-13 114.1 28.2 131 292-445 257-419 (511)
10 4fuq_A Malonyl COA synthetase; 99.2 2.5E-09 8.6E-14 116.9 23.9 132 292-445 265-420 (503)
11 1pg4_A Acetyl-COA synthetase; 99.2 8E-09 2.7E-13 116.8 27.6 228 294-568 377-646 (652)
12 3fce_A D-alanine--poly(phospho 99.2 3.4E-09 1.2E-13 115.9 23.8 131 292-445 258-420 (512)
13 3kxw_A Saframycin MX1 syntheta 99.1 7E-10 2.4E-14 123.2 17.7 108 381-505 392-529 (590)
14 3l8c_A D-alanine--poly(phospho 99.1 5.6E-10 1.9E-14 122.2 16.6 132 292-445 261-424 (521)
15 3ni2_A 4-coumarate:COA ligase; 99.1 2.7E-09 9.1E-14 117.6 20.7 132 292-445 294-455 (536)
16 3ivr_A Putative long-chain-fat 99.1 1.1E-09 3.7E-14 119.7 17.3 129 294-446 271-422 (509)
17 1t5h_X 4-chlorobenzoyl COA lig 99.1 8.6E-09 2.9E-13 112.5 24.3 130 294-445 271-423 (504)
18 3nyq_A Malonyl-COA ligase; A/B 99.1 1.9E-09 6.4E-14 118.0 19.1 120 309-445 286-427 (505)
19 2d1s_A Luciferase, luciferin 4 99.1 2E-09 6.7E-14 119.1 18.9 132 293-445 307-462 (548)
20 1ry2_A Acetyl-coenzyme A synth 99.1 8.1E-09 2.8E-13 117.0 22.0 235 294-565 383-659 (663)
21 3rix_A Luciferase, luciferin 4 99.0 4.2E-09 1.4E-13 116.3 18.2 133 293-446 305-461 (550)
22 3c5e_A Acyl-coenzyme A synthet 99.0 6.9E-09 2.4E-13 115.4 19.9 129 294-445 321-477 (570)
23 1mdb_A 2,3-dihydroxybenzoate-A 99.0 1.2E-08 4.2E-13 112.3 21.3 129 294-445 297-451 (539)
24 3g7s_A Long-chain-fatty-acid-- 99.0 4.9E-09 1.7E-13 115.8 16.5 131 293-445 294-460 (549)
25 3gqw_A Fatty acid AMP ligase; 99.0 5.8E-09 2E-13 115.2 16.1 60 382-446 405-483 (576)
26 3rg2_A Enterobactin synthase c 99.0 1E-08 3.5E-13 114.9 17.8 130 293-445 300-455 (617)
27 3o83_A Peptide arylation enzym 98.9 5.9E-09 2E-13 115.1 14.8 131 294-446 306-461 (544)
28 3r44_A Fatty acyl COA syntheta 98.9 8.6E-09 2.9E-13 113.0 15.8 126 294-445 283-434 (517)
29 3ite_A SIDN siderophore synthe 98.9 2.5E-09 8.7E-14 118.2 10.9 131 293-446 292-449 (562)
30 3ipl_A 2-succinylbenzoate--COA 98.9 1.1E-07 3.8E-12 103.4 22.2 57 385-445 345-419 (501)
31 1amu_A GRSA, gramicidin synthe 98.9 3.2E-08 1.1E-12 109.8 17.8 129 294-445 292-451 (563)
32 3tsy_A Fusion protein 4-coumar 98.8 1.5E-08 5E-13 119.7 14.2 132 294-446 343-503 (979)
33 4gr5_A Non-ribosomal peptide s 98.8 1.6E-07 5.6E-12 104.1 20.9 131 294-446 325-491 (570)
34 4gs5_A Acyl-COA synthetase (AM 98.8 4.4E-08 1.5E-12 102.6 14.4 61 383-448 210-274 (358)
35 4dg8_A PA1221; ANL superfamily 98.7 6.6E-07 2.3E-11 100.5 20.4 132 293-445 274-440 (620)
36 2v7b_A Benzoate-coenzyme A lig 98.7 2.7E-07 9.4E-12 101.1 16.1 116 309-445 314-450 (529)
37 2vsq_A Surfactin synthetase su 98.6 3.6E-06 1.2E-10 102.4 25.3 129 295-445 720-882 (1304)
38 1v25_A Long-chain-fatty-acid-C 98.6 3.4E-07 1.2E-11 100.8 13.7 128 294-446 292-457 (541)
39 3t5a_A Long-chain-fatty-acid-- 97.9 3.3E-05 1.1E-09 82.9 10.3 29 89-118 182-210 (480)
40 3lax_A Phenylacetate-coenzyme 95.7 0.015 5E-07 49.6 5.9 89 425-532 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 95.5 0.021 7E-07 48.9 5.9 91 424-533 1-94 (109)
42 2v7b_A Benzoate-coenzyme A lig 63.7 3.1 0.00011 44.6 2.7 28 88-116 181-208 (529)
43 2vxa_A Dodecin; flavoprotein, 54.4 30 0.001 27.2 6.1 48 432-480 16-63 (72)
44 3onr_A Protein transport prote 53.7 33 0.0011 26.9 6.2 48 432-480 15-62 (72)
45 2vjv_A Transposase ORFA; DNA-b 49.5 1.4E+02 0.0048 26.5 11.1 103 420-538 25-132 (159)
46 2cc6_A VNG1446H, dodecin; flav 49.4 38 0.0013 26.3 5.9 48 432-480 13-60 (68)
47 2ux9_A Dodecin; flavoprotein; 41.2 38 0.0013 26.4 4.8 48 432-480 15-62 (69)
48 2yiz_A Dodecin; flavoprotein, 40.0 42 0.0014 26.1 4.8 48 432-480 15-62 (69)
49 2m0n_A Putative uncharacterize 31.5 98 0.0033 26.4 6.1 54 233-286 42-100 (112)
50 3ol3_A Putative uncharacterize 28.1 1.9E+02 0.0066 24.3 7.4 54 233-286 45-100 (107)
51 2fyx_A Transposase, putative; 27.7 2.9E+02 0.01 23.7 11.1 42 429-482 38-79 (143)
52 2f5g_A Transposase, putative; 23.9 3.2E+02 0.011 22.9 11.2 101 420-540 17-124 (133)
53 3isy_A Bsupi, intracellular pr 22.0 47 0.0016 28.7 2.5 26 383-408 38-65 (120)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-125 Score=1044.41 Aligned_cols=550 Identities=32% Similarity=0.583 Sum_probs=499.9
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCChhhhhh-hcCCCCCCChh-hHhhcCCCCchhhhHHHHHHHhCCCCC
Q 008073 3 TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAA-TYKRTVPLSCYDDYADHINQLAGGDHG 80 (578)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~-f~~i~~~~s~~-df~~~vPl~~Yed~~pyieR~~~Ge~~ 80 (578)
.+++.+++||+.++||.++|+++|++||++|++|+|||+| |++|. ++++ ||+++|||++|||++||||||++||.
T Consensus 15 ~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~--~~~e~dF~~~VPi~~Yedl~pyIeRi~~Ge~- 91 (581)
T 4epl_A 15 DMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNA--TDPEEAFKSMVPLVTDVELEPYIKRMVDGDT- 91 (581)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC------CHHHHHHHHSCCBCHHHHHHHHHHHHTTCC-
T ss_pred ccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCccc--CCHHHHHHHhCCCccHHHHHHHHHHHHCCCC-
Confidence 5778899999999999999999999999999999999999 99872 6789 99999999999999999999999995
Q ss_pred CCCCCcccCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCceEEEEeccCccccCC
Q 008073 81 QNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHD-VNKILFFIYSDNKTTTKA 159 (578)
Q Consensus 81 ~~~~~vl~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~t~~ 159 (578)
++|||++||.+|++|||||+|++|+||+|+++++.++. ++.++..+++++ |++. .||.|+|++++++.+|++
T Consensus 92 ---~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~--~~~~~~~~~~~~--p~l~~~Gk~L~l~~~s~~~~t~~ 164 (581)
T 4epl_A 92 ---SPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRD--FPIDDNGKALQFIFSSKQYISTG 164 (581)
T ss_dssp ---SSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH--SCCCTTCEEEEECCCCCCEECTT
T ss_pred ---CCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHhhC--CccccCCcEEEEeecCCcccCCC
Confidence 59999999999999999999999999999999998644 555666677776 8888 899999888999999999
Q ss_pred CcEEeecccccccCCCc-ccc--cccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHH
Q 008073 160 GFKVMAASAFPLQGSSN-ENL--SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESK 236 (578)
Q Consensus 160 Gip~G~~S~~~~~~~~~-~~~--~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~ 236 (578)
|+|+|++|++.++ +.. ++. +....+++|.+++.++|+.+++||||||||.++++|..|+++|+++|+.+++.|+++
T Consensus 165 Gi~~G~~S~~~~~-s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~ 243 (581)
T 4epl_A 165 GVPVGTATTNVYR-NPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV 243 (581)
T ss_dssp SCEEECHHHHHHT-STTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHH
T ss_pred Cceeeechhhhhh-cchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHH
Confidence 9999999999997 543 232 345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCC-CccCcccccCCCCceeEEEecCchHHHHHHH
Q 008073 237 WEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKI 315 (578)
Q Consensus 237 w~~l~~dI~~gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~-~~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l 315 (578)
|+++|+||++|+++++++++.+|+++++++ .|+|++|++|+++|++. +|.|++++|||||++|+||++|+|++|+++|
T Consensus 244 We~l~~dI~~gtl~~~it~~~~R~~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l 322 (581)
T 4epl_A 244 WEEIVTDIKDGVLSNRITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKL 322 (581)
T ss_dssp HHHHHHHHHHTCCCTTCCCHHHHHHHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHH
T ss_pred HHHHHHHHHhcCCCcCCCCHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHH
Confidence 999999999999999999999999999999 79999999999999985 6999999999999999999999999999999
Q ss_pred HHHhCCCCccccccccCceeeeeecCCCCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCCceEEEEEcc
Q 008073 316 KYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTT 395 (578)
Q Consensus 316 ~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt 395 (578)
++++|++|+++.+|+||||++|+|+++.|+++...|+++|+.+||||||.++. +.+++++++++|||+|++|||||||
T Consensus 323 ~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt 400 (581)
T 4epl_A 323 RHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITN 400 (581)
T ss_dssp HHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEES
T ss_pred HHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEee
Confidence 99998999999999999999999999999987789999999999999998865 4456889999999999999999999
Q ss_pred CCceeccccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCc
Q 008073 396 YRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPK 472 (578)
Q Consensus 396 ~~GLyRYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~ 472 (578)
.+||||||+||+|+|+||+|++|+|+|+||.++ +.|||++|++|++||.+|++.|.+ +|+.|.+||+.++.++.||
T Consensus 401 ~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~ 479 (581)
T 4epl_A 401 YAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPG 479 (581)
T ss_dssp TTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSC
T ss_pred ccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCC
Confidence 999999999999999999999999999999998 999999999999999999987743 7999999999998777799
Q ss_pred eEEEEEEeecCccccCCCHHHHHHHHHHHHHHh-ChhHHHhhhcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCCCC
Q 008073 473 KLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPP 551 (578)
Q Consensus 473 ~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~g~l~p~~v~~v~~G~f~~~~~~~~~~G~~~~Q~K~P 551 (578)
||++|||+.+. ++.+.+++||..||++| |++|+.+|..|+|+|++|++|++|+|.+|+++++++|++++|+|+|
T Consensus 480 hyv~~wE~~~~-----~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~P 554 (581)
T 4epl_A 480 HYAIFWEISGE-----TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMP 554 (581)
T ss_dssp EEEEEEEESSC-----CCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCC
T ss_pred cEEEEEeecCC-----CCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCC
Confidence 99999999642 45678999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccc--CCHhHHHHHhccceEEEe
Q 008073 552 KIV--RNREIVEFMEGCSLVTVR 572 (578)
Q Consensus 552 r~~--~~~~~~~~l~~~~~~~~~ 572 (578)
||+ ++++++++|+++|++.-.
T Consensus 555 R~~~~~~~~~~~~L~~~v~~~~~ 577 (581)
T 4epl_A 555 RCVKPSNAKVLQILCENVVSSYF 577 (581)
T ss_dssp SSCCTTCHHHHHHHHTTEEEEEE
T ss_pred eeecCCCHHHHHHHHhccccccc
Confidence 999 999999999999998654
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=2.3e-125 Score=1046.08 Aligned_cols=554 Identities=30% Similarity=0.600 Sum_probs=454.0
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCChhhhhhhcCCCCCCChhhHhhcCCCCchhhhHHHHHHHhCCCCCC
Q 008073 2 MTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQ 81 (578)
Q Consensus 2 ~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~f~~i~~~~s~~df~~~vPl~~Yed~~pyieR~~~Ge~~~ 81 (578)
+.+++.+++||+.++||.++|+++|++||++|++|+|||+||++| ++++|||++|||++|||++||||||++||.
T Consensus 12 ~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~f~~i---~~~~~F~~~VPi~~Yedl~pyIeRi~~Ge~-- 86 (581)
T 4eql_A 12 DINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDR---FDKELFKKNVPIVSYEDIKPYLDRVVNGES-- 86 (581)
T ss_dssp --CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHTTCCS---CCHHHHHHHSCCBCHHHHHHHHHHHHTTCC--
T ss_pred CCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHHhhcC---CCHHHHHHhCCCccHHHHHHHHHHHHcCCC--
Confidence 357788999999999999999999999999999999999999999 999999999999999999999999999997
Q ss_pred CCCCcccCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCccccCCCc
Q 008073 82 NDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF 161 (578)
Q Consensus 82 ~~~~vl~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi 161 (578)
++|||++||.+|++|||||+|++|+||+|+++++.+++ ++.++..+++++ .|.+..||.|++++.+.+.+|++|+
T Consensus 87 --~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~--~~~~~~~~~~~~-~p~~~~Gk~l~l~~~~~~~~t~~G~ 161 (581)
T 4eql_A 87 --SDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTF--IYDLRMQVITKH-VKGVEEGKGMMFLFTKQESMTPSGL 161 (581)
T ss_dssp --GGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH-CCSCTTSEEEECCCCCCCEECTTSC
T ss_pred --CcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHHhc-CCccccCCEEEEeccCCcccCCCCe
Confidence 79999999999999999999999999999999998765 577778877776 4677789999988888889999999
Q ss_pred EEeecccccccCCCc-ccc--cccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHHHH
Q 008073 162 KVMAASAFPLQGSSN-ENL--SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWE 238 (578)
Q Consensus 162 p~G~~S~~~~~~~~~-~~~--~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~ 238 (578)
|+|++|+++++ +.+ +++ .+...|++|.+++.++|+.+++||||||||.++++|+.|+++|+++++.+++.|+++|+
T Consensus 162 ~~g~~s~~~~~-~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~we 240 (581)
T 4eql_A 162 PARVATSSYFK-SDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWE 240 (581)
T ss_dssp EEECHHHHHHT-SHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred eecccchhhhh-cchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHH
Confidence 99999999997 533 232 56778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccCcccccCCCCceeEEEecCchHHHHHHHHHH
Q 008073 239 QLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYY 318 (578)
Q Consensus 239 ~l~~dI~~gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~ 318 (578)
++|+||++|+++++++++.+|.++..+|..|||++|++|+++|++.+|.|++++|||||++|+||++|+|++|+++|+++
T Consensus 241 el~~dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~ 320 (581)
T 4eql_A 241 ELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYY 320 (581)
T ss_dssp HHHHHHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHH
T ss_pred HHHHHHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHH
Confidence 99999999999999999999999999995599999999999999877999999999999999999999999999999999
Q ss_pred hCCCCccccccccCceeeeeecCCCCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCCceEEEEEccCCc
Q 008073 319 AGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG 398 (578)
Q Consensus 319 ~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~~G 398 (578)
+|++|+++++|+||||++|+|+++.|+++...|+++|+.+||||||.++. +++++++++|||.|++|||||||.+|
T Consensus 321 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~----~~~~~v~l~eVe~G~~YelViTt~~G 396 (581)
T 4eql_A 321 CNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGG----DKNDVVDLEDVKLGCTYEPVVTNFAG 396 (581)
T ss_dssp HTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTT----CCSSCEEGGGCCTTCEEEEEEECSSS
T ss_pred cCCCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecccc----CCCcEeCHHHcCCCceEEEEEeeccc
Confidence 99999999999999999999999999887678889999999999998853 45789999999999999999999999
Q ss_pred eeccccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEE
Q 008073 399 FYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLM 475 (578)
Q Consensus 399 LyRYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~ 475 (578)
|||||+||+|+|+||++++|+|+|+||.++ +.|||++|++|++||.+|++.|++ +|+.|.+||+.++.++.||||+
T Consensus 397 L~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~-~g~~l~eft~~~~~~~~p~Hy~ 475 (581)
T 4eql_A 397 LYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYV 475 (581)
T ss_dssp CCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC---------------CEEEECSSSSBEEE
T ss_pred eeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhh-cCCEEEEEEEecCCCCCCCeEE
Confidence 999999999999999999999999999998 999999999999999999965533 7999999999988777799999
Q ss_pred EEEEeec-Cc-----cccCCCHHHHHHHHHHHHHHhChhHHHhh-hcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCC
Q 008073 476 IFVEIRE-GC-----TKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQY 548 (578)
Q Consensus 476 l~vE~~~-~~-----~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R-~~g~l~p~~v~~v~~G~f~~~~~~~~~~G~~~~Q~ 548 (578)
+|||+.. +. ....++++.+++||..||++||++|+.+| ..++|+|++|++|++|+|.+|+++++++|+++||+
T Consensus 476 ~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~ 555 (581)
T 4eql_A 476 VYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQY 555 (581)
T ss_dssp EECC---------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC-----------------------
T ss_pred EEEEEecccccccccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCc
Confidence 9999852 00 00124457899999999999999999999 55599999999999999999999999999999999
Q ss_pred CCCcccCCHhHHHHHhccceEEE
Q 008073 549 KPPKIVRNREIVEFMEGCSLVTV 571 (578)
Q Consensus 549 K~Pr~~~~~~~~~~l~~~~~~~~ 571 (578)
|+|||+++++++++|+++|++.-
T Consensus 556 K~PR~~~~~~~~~~L~~~v~~~~ 578 (581)
T 4eql_A 556 KTPRCIKSGKALQVLETCVVAKF 578 (581)
T ss_dssp ---------------------CE
T ss_pred CCCcccCCHHHHHHHHhcchhee
Confidence 99999999999999999999853
No 3
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=3.4e-124 Score=1037.90 Aligned_cols=557 Identities=31% Similarity=0.600 Sum_probs=496.5
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCChhhhhh-hcCCCCCCChhhHhhcCCCCchhhhHHHHHHHhCCCCCC
Q 008073 3 TDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQ 81 (578)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~-f~~i~~~~s~~df~~~vPl~~Yed~~pyieR~~~Ge~~~ 81 (578)
.+++.+++||+.++||.++|+++|++||++|++|+|||+| |++| ++++||+++|||++|||++||||||++||.
T Consensus 18 ~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i---~~~~dF~~~VPv~~Yedl~p~ieRi~~Ge~-- 92 (609)
T 4b2g_A 18 KDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGS---TVRETFKSKIPVIKYEDLQPEIQRIANGDR-- 92 (609)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTC---CSHHHHHHHSCCBCHHHHHHHHHHHHTTCC--
T ss_pred chHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCC---CCHHHHHHhCCCccHHHHHHHHHHHhcCCC--
Confidence 4677899999999999999999999999999999999999 9999 999999999999999999999999999997
Q ss_pred CCCCcccCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCccccCCCc
Q 008073 82 NDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF 161 (578)
Q Consensus 82 ~~~~vl~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi 161 (578)
++|||++||.+|++|||||+|++|+||+|+++++.++. ++.++..+++++ .|.+..||.|+|++++.+.+|++|+
T Consensus 93 --~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~--~~~~~~~~~~~~-~p~~~~Gk~l~l~~~~~~~~t~~Gi 167 (609)
T 4b2g_A 93 --SAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQM--LYSLLMPVMNLY-VPGLDKGKGLYFLFVKSETRTPGGL 167 (609)
T ss_dssp --SSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHH--HHHHHHHHHHHH-SCCGGGSEEEECCCCCCCEECTTSC
T ss_pred --CCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHH--HHHHHHHHHHhc-CCcccCCCeEEEcccCCcccCCCCc
Confidence 68999999999999999999999999999999998655 578888888876 4676779999988888899999999
Q ss_pred EEeecccccccCCCc-ccc--cccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHHHH
Q 008073 162 KVMAASAFPLQGSSN-ENL--SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWE 238 (578)
Q Consensus 162 p~G~~S~~~~~~~~~-~~~--~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~ 238 (578)
|+|++|+++++ +.+ +++ .+...|++|.+++.++|+.+++||||||||.++++|+.|+++|+++++.+++.|+++|+
T Consensus 168 ~~g~~s~~~~~-s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~We 246 (609)
T 4b2g_A 168 LARPVLTSYYK-SEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWH 246 (609)
T ss_dssp EEECHHHHHHT-SHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhc-cchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHH
Confidence 99999999997 533 222 56678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccCcccccCCCCceeEEEecCchHHHHHHHHHH
Q 008073 239 QLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYY 318 (578)
Q Consensus 239 ~l~~dI~~gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~g~~~~lWP~L~~i~~~~~G~~~~y~~~l~~~ 318 (578)
++|+||++|+++++++++.+|.++++++ .|+|++|++|+++|++.+|.|++++|||||++|+||++|+|++|+++|+++
T Consensus 247 el~~dI~~gtl~~~it~~~~r~a~~~~l-sp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~ 325 (609)
T 4b2g_A 247 QLTHDIRTGTLSPKITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYY 325 (609)
T ss_dssp HHHHHHHHTCCCTTCCCHHHHHHTTTTC-CCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHH
T ss_pred HHHHHHHhccCCcCCCCHHHHHHHhcCC-CcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHH
Confidence 9999999999999999999999999999 799999999999999877999999999999999999999999999999999
Q ss_pred hCCCCccccccccCceeeeeecCCCCCCCCcceeccCCceEEEEeeCCCCC---ccccCCceeeccccCCCceEEEEEcc
Q 008073 319 AGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK---NEAVGEETVDFSGVEIGKMYEVVVTT 395 (578)
Q Consensus 319 ~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~---~~~~~~~~l~~~ele~G~~YelVvTt 395 (578)
+|++|+++.+|+||||++|+|+++.|+++...|+++|+.+||||||.++.+ .+.+++++|+++|||+|+.|||||||
T Consensus 326 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt 405 (609)
T 4b2g_A 326 SGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITT 405 (609)
T ss_dssp HTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEEC
T ss_pred cCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhh
Confidence 989999999999999999999999998877889999999999999987531 03566889999999999999999999
Q ss_pred CCceeccccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCc
Q 008073 396 YRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPK 472 (578)
Q Consensus 396 ~~GLyRYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~ 472 (578)
.+||||||+||+|+|+||+|++|+|+|+||.++ +.|||++|++|++||.+|++.|++ +|+.|.+||+.++.++.||
T Consensus 406 ~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~-~g~~l~eft~~~d~~~~p~ 484 (609)
T 4b2g_A 406 YAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLRE-VNTSVVEYTSFADTKTIPG 484 (609)
T ss_dssp TTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGG-TTEEEEEEEEEEECSSSSC
T ss_pred hhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhc-cCCeEEEEEEecCCCCCCC
Confidence 999999999999999999999999999999998 889999999999999999976643 7999999999988777799
Q ss_pred eEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhh-hcCCCCCcEEEEeCCCcHHHHHHHHHHcCCCCCCCCCC
Q 008073 473 KLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPP 551 (578)
Q Consensus 473 ~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R-~~g~l~p~~v~~v~~G~f~~~~~~~~~~G~~~~Q~K~P 551 (578)
||++|||+........++++.+++||..||++||++|+.+| ..++|+|++|++|++|+|.+|+++++++|++++|+|+|
T Consensus 485 Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~P 564 (609)
T 4b2g_A 485 HYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVP 564 (609)
T ss_dssp EEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CC
T ss_pred cEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCC
Confidence 99999999621001235678899999999999999999999 45599999999999999999999999999999999999
Q ss_pred cccCCHhHHHHHhccceEEEe
Q 008073 552 KIVRNREIVEFMEGCSLVTVR 572 (578)
Q Consensus 552 r~~~~~~~~~~l~~~~~~~~~ 572 (578)
||+++++++|+|+++|++.-.
T Consensus 565 R~~~~~~~~~~L~~~v~~~~~ 585 (609)
T 4b2g_A 565 RCVNFTPIMELLDSRVVSSHF 585 (609)
T ss_dssp SSCC--CCHHHHHTTEEEEEE
T ss_pred cccCCHHHHHHHHhccccccc
Confidence 999999999999999998654
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.84 E-value=3.5e-19 Score=191.44 Aligned_cols=385 Identities=14% Similarity=0.120 Sum_probs=220.8
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHHhccCChhhhhhhc-------CCCCCCChhhHhhcCCCCchhhhHHHHHHHhCCCCCC
Q 008073 10 KLEDST-KNATRHQLETLQSILERQSGVRYLQPYLS-------GCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQ 81 (578)
Q Consensus 10 ~~e~~~-~~~~~~Q~~~L~~iL~~~~~T~ygr~~f~-------~i~~~~s~~df~~~vPl~~Yed~~pyieR~~~Ge~~~ 81 (578)
.+|.+. ...++.|.+.|+++++...+++|+|++|+ .| .+.+|++ ++|+.++++++.... .
T Consensus 10 ~~e~~~~~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i---~~~~dl~-~lP~~~~~~l~~~~p------~-- 77 (436)
T 3qov_A 10 EIEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSI---QSLDDIR-KIPFTTKSDMRANYP------F-- 77 (436)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSC---SSSGGGG-GSCCBCHHHHHHTTT------T--
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhC---CCHHHHH-HCCCCCHHHHHhcCC------C--
Confidence 345544 56788999999999987799999999854 35 7889998 799999999975321 1
Q ss_pred CCCCcccC---CCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCccccC
Q 008073 82 NDQPLLAV---DPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTK 158 (578)
Q Consensus 82 ~~~~vl~~---~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~ 158 (578)
..++. +.+.+...||||| |+||-+++|...+..+.. .... .... .++..+..+. .. .+.....
T Consensus 78 ---~~~~~~~~~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~----~~~~-~~~~---~~~~~~d~~~-~~-~~~~~~~ 143 (436)
T 3qov_A 78 ---GLVAGDMKRDGVRIHSSSGTT-GNPTVIVHSQHDLDSWAN----LVAR-CLYM---VGIRKTDVFQ-NS-SGYGMFT 143 (436)
T ss_dssp ---TTCCSCHHHHEEEEEECSCSS-SCCCEEEEEHHHHHHHHH----HHHH-HHHH---TTCCTTSEEE-EC-SCCTTCH
T ss_pred ---ccccCCCcCCeEEEEECCCcC-CCCeEEEECHHHHHHHHH----HHHH-HHHH---cCCCCCCEEE-EC-cccccch
Confidence 12221 3356678999999 999999999987644222 1111 1111 2333333222 11 1100000
Q ss_pred CCcEEeecccccccCCCcccccccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHHHH
Q 008073 159 AGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWE 238 (578)
Q Consensus 159 ~Gip~G~~S~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~ 238 (578)
+++ ...+..+..+.. .++...+ +-+
T Consensus 144 ~~~-------------------------------------~~~~~~l~~G~~-----~~~~~~~-------------~~~ 168 (436)
T 3qov_A 144 GGL-------------------------------------GFQYGAERLGCL-----TVPAAAG-------------NSK 168 (436)
T ss_dssp HHH-------------------------------------HHHHHHHHHTCE-----EECCCSC-------------CHH
T ss_pred hHH-------------------------------------HHHHHHHHcCCE-----EEeCCCC-------------CHH
Confidence 000 011112222210 0011111 113
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccCcccccCCCCceeEEEecCc---hHHHHHHH
Q 008073 239 QLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS---MSQYCSKI 315 (578)
Q Consensus 239 ~l~~dI~~gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~g~~~~lWP~L~~i~~~~~G~---~~~y~~~l 315 (578)
.+++.|++..+.-- .+. |..+..|.+...+.+ ...-+++|++ +++|+ ....++.+
T Consensus 169 ~~~~~i~~~~~t~~-------------~~~--P~~~~~l~~~~~~~~----~~~~~~~lr~---i~~gGe~l~~~~~~~~ 226 (436)
T 3qov_A 169 RQIKFISDFKTTAL-------------HAI--PSYAIRLAEVFQEEG----IDPRETTLKT---LVIGAEPHTDEQRRKI 226 (436)
T ss_dssp HHHHHHHHHTCCEE-------------ECC--HHHHHHHHHHHHHTT----CCTTSSSCCE---EEEESSCCCHHHHHHH
T ss_pred HHHHHHHHHCCCEE-------------EEC--HHHHHHHHHHHHHcC----CCcccCCccE---EEEeCCcCCHHHHHHH
Confidence 34455555443221 112 334455554444321 1112567773 34444 25667788
Q ss_pred HHHhCCCCccccccccCce-eeeeecCCCCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCCceEEEEEc
Q 008073 316 KYYAGEVPVLGGDYFASEC-YVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVT 394 (578)
Q Consensus 316 ~~~~g~v~~~~~~y~asEg-~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvT 394 (578)
++.+ +++++ +.||+||+ ..++... |+...+ +.+..+...+|.+++++. ..+.+|+.+||+||
T Consensus 227 ~~~~-g~~v~-~~YG~TE~~~~~~~~~--~~~~~g-~~~~~~~~~v~i~d~~~g------------~~~~~g~~Gel~v~ 289 (436)
T 3qov_A 227 ERML-NVKAY-NSFGMTEMNGPGVAFE--CQEQNG-MHFWEDCYLVEIIDPETG------------EPVPEGEIGELVLT 289 (436)
T ss_dssp HHHH-TSEEE-EEEEEGGGTEEEEEEE--CTTCSS-EEECTTTEEEEEECTTTC------------SBCSTTCCEEEEEE
T ss_pred HHHh-CccEE-ecCcchhhcCCeeEEe--cCCCCe-eEEccCceEEEEEECCCC------------CCCCCCCceEEEEe
Confidence 8888 59999 99999997 3323222 222223 444545678999986642 34668999999999
Q ss_pred cCC----ceeccccCCEEEEeeeeCC----CCEE-EEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEE
Q 008073 395 TYR----GFYRYRLGDIVKVVDFYNS----SPQV-EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFA 462 (578)
Q Consensus 395 t~~----GLyRYr~GDvV~v~g~~~~----~P~i-~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~ 462 (578)
+.. .+.||+|||++++....|. .|++ .|+||.++ ++|+++++.+|++++.+. .++. ..+.
T Consensus 290 ~~~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~-------p~v~-~~~v 361 (436)
T 3qov_A 290 TLDREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF-------PELG-SNYL 361 (436)
T ss_dssp ESSCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC-------TTEE-EEEE
T ss_pred ccCcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC-------cCcC-CcEE
Confidence 752 2668999999999764322 3455 99999998 889999999999888753 2322 1333
Q ss_pred EeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCcEEEEeCCCcHHH
Q 008073 463 GYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 533 (578)
Q Consensus 463 ~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~G~f~~ 533 (578)
+..+........+++|+.. +. ...+....+++.+.+.+.|.. |. -.|..|.+|+.+.|++
T Consensus 362 v~~~~~~~~~~l~a~v~~~-~~--~~~~~~~~~~l~~~l~~~l~~-~~-------~~p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 362 ITLETVNNQDEMIVEVELS-DL--STDNYIELEKIRRDIIRQLKD-EI-------LVTPKVKLVKKGSLPQ 421 (436)
T ss_dssp EEEEEETTEEEEEEEEEEC-TT--CCCCHHHHHHHHHHHHHHHHH-HH-------SSCCEEEEECTTCCC-
T ss_pred EEEEcCCCCcEEEEEEEEc-Cc--cccchhhHHHHHHHHHHHHHH-hc-------CCceEEEEeCCCcccC
Confidence 3332212234667888876 31 111122334455556565511 11 2466899999888774
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.83 E-value=4.4e-20 Score=198.58 Aligned_cols=379 Identities=15% Similarity=0.103 Sum_probs=215.1
Q ss_pred HhHHHHHHHHHHHHHHh-ccCChhhhhhhc-------CCCCCCChhhHhhcCCCCchhhhHHHHHHHhCCCCCCCCCCcc
Q 008073 16 KNATRHQLETLQSILER-QSGVRYLQPYLS-------GCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLL 87 (578)
Q Consensus 16 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~f~-------~i~~~~s~~df~~~vPl~~Yed~~pyieR~~~Ge~~~~~~~vl 87 (578)
.+.++.|.+.|+.+|+. .+++.|++++|. ++ .+.+||+ ++|+.+|++++.... .+- .-.
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i---~~~~dl~-~lP~~~~~~l~~~~~---~~~------~~~ 87 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDL---KTLADLS-RFPFTTKGDLRDSYP---FGM------FAV 87 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGC---SSGGGGG-GSCCBCHHHHHHTTT---TTT------CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhC---CCHHHHH-HCCCCCHHHHHhcCC---Ccc------ccC
Confidence 56778999999999997 588999999843 36 7889998 799999999874321 011 112
Q ss_pred cCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCccccCCCcEEeecc
Q 008073 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAAS 167 (578)
Q Consensus 88 ~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~G~~S 167 (578)
.++.+.++..||||| |+||-+++|...+..+.. ... ..... .++..+..+. .. .+.....+|+
T Consensus 88 ~~~~~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~----~~~-~~~~~---~~~~~~d~~~-~~-~~~~~~~~~~------ 150 (437)
T 2y27_A 88 PQDRISRIHASSGTT-GKPTVVGYTAADIDTWAN----LVA-RSIRA---AGARRGDKVH-VS-YGYGLFTGGL------ 150 (437)
T ss_dssp CGGGCCEEEECCCTT-SSCCEEEECHHHHHHHHH----HHH-HHHHH---TTCCTTCEEE-EC-SCCSSSHHHH------
T ss_pred ChhHeEEEEECCCCC-CCceEEecCHHHHHHHHH----HHH-HHHHH---cCCCCCCEEE-Ec-ccccccccch------
Confidence 334556678899999 999999999987644222 111 11111 2333332222 11 1000000000
Q ss_pred cccccCCCcccccccccccCCchhhcCCChhHHHHHHHHhccccCCcccee-eccchhhHHHHHHHHHHHHHHHHHHHHh
Q 008073 168 AFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGI-FSPYAIGLIGAFSFFESKWEQLCDDLEN 246 (578)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i-~~~f~~~ll~~~~~l~~~w~~l~~dI~~ 246 (578)
...+..++.+. .++ ...+ +.+.+++.|++
T Consensus 151 -------------------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~ 180 (437)
T 2y27_A 151 -------------------------------GAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQD 180 (437)
T ss_dssp -------------------------------HHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHH
Confidence 00111122221 111 1111 12334555555
Q ss_pred cCCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccCcccccCCCCceeEEEecCc--hHHHHHHHHHHhCCCCc
Q 008073 247 GYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPV 324 (578)
Q Consensus 247 gti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~ 324 (578)
..+.- ..+. |..+..|.+...+.+ . ..-+++|+.+ +.+|. ....++.+++.+ ++++
T Consensus 181 ~~~t~-------------l~~~--Ps~~~~l~~~~~~~~---~-~~~~~~lr~i--~~gGe~l~~~~~~~~~~~~-g~~v 238 (437)
T 2y27_A 181 FRPDI-------------IMVT--PSYMLSIADEIERQG---L-DPVQSSLRIG--IFGAEPWTNDMRVAIEQRM-GIDA 238 (437)
T ss_dssp HCCSE-------------EEEC--HHHHHHHHHHHHHTT---C-CGGGSSCCEE--EEESSCCCHHHHHHHHHHH-TSEE
T ss_pred hCCCE-------------EEEC--HHHHHHHHHHHHHcC---C-CcccCCeeEE--EEcCccCCHHHHHHHHHHH-CcCE
Confidence 44322 1112 333444544443221 1 1125777743 23333 356777888878 5999
Q ss_pred cccccccCce-e--eeeecCCCCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCCceEEEEEccCCc---
Q 008073 325 LGGDYFASEC-Y--VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG--- 398 (578)
Q Consensus 325 ~~~~y~asEg-~--~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~~G--- 398 (578)
+ +.||+||+ . ++++. +.....+.+..+..++|++++++ + ..+.+|+.+||+||+...
T Consensus 239 ~-~~YG~TE~~g~~~~~~~----~~~~~g~~~~~~~~~~~i~d~~~-------g-----~~~~~g~~Gel~v~~~t~~~~ 301 (437)
T 2y27_A 239 V-DIYGLSEVMGPGVASEC----VETKDGPTIWEDHFYPEIIDPET-------G-----EVLPDGELGELVFTSLTKEAL 301 (437)
T ss_dssp E-EEEEETTTTEEEEEECC----TTTCSSCEECTTTEEEEEECTTT-------C-----CBCCTTCCEEEEEEESSCSSS
T ss_pred E-ecCCchhhcCCeeEEec----CCCCCceeEccCceEEEEEcCCC-------C-----CCCCCCCccEEEEecCCcCCc
Confidence 9 99999994 3 44432 22221233445567899998764 2 235689999999997643
Q ss_pred -eeccccCCEEEEeeeeC-CCCEE-EEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCc
Q 008073 399 -FYRYRLGDIVKVVDFYN-SSPQV-EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPK 472 (578)
Q Consensus 399 -LyRYr~GDvV~v~g~~~-~~P~i-~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~ 472 (578)
+.||+|||++++....+ ..|+| .|+||.++ +.|+++++.+|++++.+. .++. ..+.+..+......
T Consensus 302 ~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~-------p~V~-~~~vv~~~~~~~~~ 373 (437)
T 2y27_A 302 PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ-------RALA-PHYQIVLTKEGPLD 373 (437)
T ss_dssp CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC-------TTBC-SCCEEEEEEETTEE
T ss_pred hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC-------cCcC-ccEEEEEeecCCCc
Confidence 67999999999976322 46888 89999998 789999999999888753 2221 12333322111234
Q ss_pred eEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCcEEEEeCCCcHH
Q 008073 473 KLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFD 532 (578)
Q Consensus 473 ~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~G~f~ 532 (578)
..+++|+...+ ...+....+++.+.+.+.| +.|. --|..|.+|+.+.|+
T Consensus 374 ~l~a~v~~~~~---~~~~~~~~~~l~~~l~~~l-~~~~-------~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 374 VLTLNVEPCPE---TAPDTAAIQVAKQALAYDI-KSLI-------GVTAVINVLPVNGIE 422 (437)
T ss_dssp EEEEEECBCTT---TTTCHHHHHHHHHHHHHHH-HHHH-------CCCEEEEECCTTCSC
T ss_pred eEEEEEEECCC---ccchhhhHHHHHHHHHHHH-HHhc-------CCceEEEEeCCCCcc
Confidence 56678887543 1111122334444555545 1111 135678888877765
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.83 E-value=1.3e-18 Score=187.51 Aligned_cols=379 Identities=15% Similarity=0.092 Sum_probs=214.5
Q ss_pred HhHHHHHHHHHHHHHHh-ccCChhhhhhhc-------CCCCCCChhhHhhcCCCCchhhhHHHHHHHhCCCCCCCCCCcc
Q 008073 16 KNATRHQLETLQSILER-QSGVRYLQPYLS-------GCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLL 87 (578)
Q Consensus 16 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~f~-------~i~~~~s~~df~~~vPl~~Yed~~pyieR~~~Ge~~~~~~~vl 87 (578)
.+.++.|.+.|+++|+. .+++.|++++|. +| .+.+||+ ++|+.+|++++.... .+- .-.
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i---~~~~dl~-~lP~~~~~~l~~~~p---~~~------~~~ 89 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDL---KSLADLA-KFPFSTKNDLRDNYP---FGL------FAV 89 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGC---CSGGGGG-GSCCBCHHHHHTTTT---TTT------CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhC---CCHHHHH-HCCCCcHHHHHhhCC---Ccc------cCC
Confidence 45778999999999997 588999999853 36 8899998 899999999964321 011 112
Q ss_pred cCCCeeEEEecccCCCCcceeeecchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEeccCccccCCCcEEeecc
Q 008073 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAAS 167 (578)
Q Consensus 88 ~~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~G~~S 167 (578)
.++.+.+...||||| |+||-+++|.+.+..+.. .... .... .++..+..+. .. .+.....+|+
T Consensus 90 ~~~~~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~----~~~~-~~~~---~~~~~~d~~l-~~-~~~~~~~~~~------ 152 (443)
T 2y4o_A 90 PREQVVRVHASSGTT-GKPTVVGYTARDIDTWAN----VTAR-SIRA---AGGRPGDTLH-NA-FGYGLFTGGL------ 152 (443)
T ss_dssp CGGGCCEEEEECCSS-SSCEEEEECHHHHHHHHH----HHHH-HHHH---TTCCTTCEEE-EC-SCCSSSHHHH------
T ss_pred ChhheEEEEECCCCC-CCceEEecCHHHHHHHHH----HHHH-HHHH---cCCCCCCEEE-Ee-ccCcccccHH------
Confidence 334556678899999 999999999987644222 1111 1111 2333332222 11 1000000000
Q ss_pred cccccCCCcccccccccccCCchhhcCCChhHHHHHHHHhccccCCccceeeccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 008073 168 AFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 247 (578)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~g 247 (578)
...|..++.+.. + ++...+ +.+++++.|++.
T Consensus 153 -------------------------------~~~~~~~~~G~~----~-~~~~~~-------------~~~~~~~~i~~~ 183 (443)
T 2y4o_A 153 -------------------------------GIHYGAERLGCM----V-VPMSGG-------------QTEKQVQLIRDF 183 (443)
T ss_dssp -------------------------------HHHHHHHHHTCE----E-ECCCSC-------------CHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHcCCE----E-EECCCC-------------CHHHHHHHHHHh
Confidence 001111222210 0 000111 123344555554
Q ss_pred CCCCCCChhHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccCcccccCCCCceeEEEecCc--hHHHHHHHHHHhCCCCcc
Q 008073 248 YPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVL 325 (578)
Q Consensus 248 ti~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~g~~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~ 325 (578)
.+.- +.+. |..+..|.+...+.+. ..-+++|+.+ +.+|. ....++.+++.+ +++++
T Consensus 184 ~~t~-------------l~~~--Ps~~~~l~~~~~~~~~----~~~~~~lr~i--~~gGe~l~~~~~~~~~~~~-g~~v~ 241 (443)
T 2y4o_A 184 EPKI-------------ILVT--PSYMLNLIDEMVRQGM----DPAESSLKIG--IFGAEPWTQALRNEVETRV-GIDAL 241 (443)
T ss_dssp CCSE-------------EEEC--HHHHHHHHHHHHHTTC----CGGGSSCCEE--EEESSCCCHHHHHHHHHHH-TCEEE
T ss_pred CCcE-------------EEEC--HHHHHHHHHHHHHcCC----CcccCCceEE--EECCCcCCHHHHHHHHHHh-CcCEE
Confidence 4222 1112 3334445444432211 1124777743 23333 256778888888 59999
Q ss_pred ccccccCce-e--eeeecCCCCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCCceEEEEEccCCc----
Q 008073 326 GGDYFASEC-Y--VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRG---- 398 (578)
Q Consensus 326 ~~~y~asEg-~--~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~~G---- 398 (578)
+.||+||+ . ++.... .....+.+..+..++|++++++ ++ .+.+|+.|||+||+...
T Consensus 242 -~~YG~TE~~g~~~~~~~~----~~~~g~~~~~~~~~~~i~d~~~-------g~-----~~~~G~~Gel~v~~~t~~~~p 304 (443)
T 2y4o_A 242 -DIYGLSEVMGPGVACECV----ETKDGPVIWEDHFYPEIIDPVT-------GE-----VLPDGSQGELVFTSLTKEAMP 304 (443)
T ss_dssp -EEEEETTTTEEEEEEECT----TTCCSEEECTTTEEEEEECTTT-------CC-----BCCTTCCEEEEEEESSCSSSC
T ss_pred -eccCchhhcCCeEEeccC----CCCCceEEccCCeEEEEEcCCC-------CC-----CCCCCCceEEEEeCCCcccCh
Confidence 99999994 3 444322 2121244455567899998664 22 35689999999997533
Q ss_pred eeccccCCEEEEeeee-C-CCCEE-EEEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCc
Q 008073 399 FYRYRLGDIVKVVDFY-N-SSPQV-EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPK 472 (578)
Q Consensus 399 LyRYr~GDvV~v~g~~-~-~~P~i-~f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~ 472 (578)
+.||+|||++++.. . + ..|+| .|+||.++ +.|+++++.+|++++.+. .++. ..+.+.........
T Consensus 305 ~~~y~TGDl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~-------p~V~-~~~vv~~~~~~~~~ 375 (443)
T 2y4o_A 305 VIRYRTRDLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL-------PLLS-GQFQITLSRDGHMD 375 (443)
T ss_dssp CSSEEEEEEECEEC-CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS-------TTEE-EEEEEEEEEETTEE
T ss_pred hheeecCCEEEEcC-CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC-------cCcC-ccEEEEEecCCCCc
Confidence 56999999999986 3 2 34778 89999998 789999999999888753 2322 13333322111224
Q ss_pred eEEEEEEeec--CccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCcEEEEeCCCcHH
Q 008073 473 KLMIFVEIRE--GCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFD 532 (578)
Q Consensus 473 ~y~l~vE~~~--~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~G~f~ 532 (578)
...++|+... +. .......+++.+.+.+.| ... .--|..|.+|+.+.|+
T Consensus 376 ~~~a~v~~~~~~~~---~~~~~~~~~l~~~l~~~l-------~~~-~~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 376 RLDLAVELRSEAAA---SVTDGERAALARELQHRI-------KTM-VGVSSGVTVLAAGGIP 426 (443)
T ss_dssp EEEEEEEECHHHHT---TCCHHHHHHHHHHHHHHH-------HHH-TCCCCEEEEECTTCSC
T ss_pred eEEEEEEECCcccc---cchhhHHHHHHHHHHHHH-------HHH-hCCceEEEEeCCCccc
Confidence 5667888753 10 011222334445555555 111 1135688999877776
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.45 E-value=2.7e-13 Score=142.32 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhc-c---CChhhhhhhcCCCCC-----CChhhHhhcCCCCchhhhHH-HHHHHhCCCCCCCCCCcccC
Q 008073 20 RHQLETLQSILERQ-S---GVRYLQPYLSGCCAP-----IDAATYKRTVPLSCYDDYAD-HINQLAGGDHGQNDQPLLAV 89 (578)
Q Consensus 20 ~~Q~~~L~~iL~~~-~---~T~ygr~~f~~i~~~-----~s~~df~~~vPl~~Yed~~p-yieR~~~Ge~~~~~~~vl~~ 89 (578)
..+++.|+++++.+ . +++|+|++|+..++. ++.+|++ ++|+.+ ++++. +.+.+..- . +.+
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p~-------~-~~~ 90 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVPQ-------G-LPA 90 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSCT-------T-SCT
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCCc-------c-CCc
Confidence 35788899999874 6 899999995432211 7889997 699999 99864 33333210 1 134
Q ss_pred CCeeEEEecccCCCCcceeeecchhHHH
Q 008073 90 DPLVCFFYSSGTSSMKPKLIPYFDSALS 117 (578)
Q Consensus 90 ~pi~~F~~TSGTT~G~~K~IP~T~~~l~ 117 (578)
+.+.+...||||| |+||-+.+|...+.
T Consensus 91 ~~~a~i~~TSGTT-G~PKgv~~t~~~~~ 117 (369)
T 3hgu_A 91 DSHPQVYESGGTT-GAPKYVVAYDAWIE 117 (369)
T ss_dssp TCCCEEEEECC----CCEEEEECHHHHH
T ss_pred cccEEEEECCCCC-CCCCEEEECHHHHH
Confidence 5566778999999 99999999988654
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.26 E-value=2.2e-10 Score=127.84 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=85.8
Q ss_pred cCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCC-CCcceeccCCceEEEEeeCCCC
Q 008073 293 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP-QTTRFVMLPTAAYFEFLPFDME 368 (578)
Q Consensus 293 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~-~~~~~~l~~~~~f~EFip~~~~ 368 (578)
-+++|+. +++|+. ....+++++.+| ++++ ++||.||+.+.+...+..+. ........++ .-++.++++.
T Consensus 339 ~l~~lr~---i~~gGe~l~~~~~~~~~~~~g-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~-~~v~ivd~~g- 411 (580)
T 3etc_A 339 NFSTLKY---AVVAGEPLNPEVFNRFLEFTG-IKLM-EGFGQTETVVTIATFPWMEPKPGSIGKPTPG-YKIELMDRDG- 411 (580)
T ss_dssp CCTTCCE---EEECSSCCCHHHHHHHHHHHS-CCCE-EEECCTTSSCCEECCTTSCCCTTCCBEECTT-CEEEEECTTS-
T ss_pred CCccceE---EEEccCCCCHHHHHHHHHHhC-CeEe-cccccccccceeecCCCCCCCCCccccCCCC-CEEEEECCCC-
Confidence 3577773 344442 444566666674 8999 99999998543322111111 1112223333 3467776542
Q ss_pred CccccCCceeeccccCCCceEEEEEccC--------Cceec-------------cccCCEEEEeeeeCCCCEEEEEeeCC
Q 008073 369 KNEAVGEETVDFSGVEIGKMYEVVVTTY--------RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAP 427 (578)
Q Consensus 369 ~~~~~~~~~l~~~ele~G~~YelVvTt~--------~GLyR-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~ 427 (578)
.++.+|+.+||+|++. .|.|+ |+|||++++.. .-.+.|+||.+
T Consensus 412 ------------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~l~~~GR~d 475 (580)
T 3etc_A 412 ------------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGYLWFVGRAD 475 (580)
T ss_dssp ------------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEESS
T ss_pred ------------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCcEEEEecCC
Confidence 3467899999999863 23332 99999999843 34799999999
Q ss_pred C---ccccccCHHHHHHHHHH
Q 008073 428 K---SSFEIISERDLMSAMES 445 (578)
Q Consensus 428 ~---l~gEkv~e~~v~~av~~ 445 (578)
+ +.|+++.+.+|+++|.+
T Consensus 476 d~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 476 DIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp SCEEETTEEECHHHHHHHHTT
T ss_pred CEEEECCEEECHHHHHHHHHh
Confidence 8 88999999999988875
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.19 E-value=5.7e-09 Score=114.14 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=86.8
Q ss_pred ccCCCCceeEEEecCc--hHHHHHHHHHHhCCCCccccccccCceeee-e--ecCC----CCCCCCcceeccCCceEEEE
Q 008073 292 KLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVG-I--NLDI----AQPPQTTRFVMLPTAAYFEF 362 (578)
Q Consensus 292 ~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~asEg~~~-i--~~~~----~~~~~~~~~~l~~~~~f~EF 362 (578)
...|+++.+ +.+|. .....+++++.+++++++ +.||.||+.+. . .... ..... ......++ .-++.
T Consensus 257 ~~~~~l~~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i 331 (511)
T 3e7w_A 257 DLLPHADTF--MFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESL-PVGFAKPD-MNIFI 331 (511)
T ss_dssp TTCTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSC-CCBEECTT-CEEEE
T ss_pred ccCCcccEE--EEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcC-CCcceeCC-CEEEE
Confidence 556777733 33343 255667778888889999 99999997432 1 1110 00000 11112233 34566
Q ss_pred eeCCCCCccccCCceeeccccCCCceEEEEEccC---Cce-----------------eccccCCEEEEeeeeCCCCEEEE
Q 008073 363 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF-----------------YRYRLGDIVKVVDFYNSSPQVEF 422 (578)
Q Consensus 363 ip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GL-----------------yRYr~GDvV~v~g~~~~~P~i~f 422 (578)
++.+ + .++.+|+.+||+|+.. .|. +.|+|||++++. .-.+.|
T Consensus 332 ~d~~--------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-----dG~l~~ 393 (511)
T 3e7w_A 332 MDEE--------G-----QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-----DGQIFC 393 (511)
T ss_dssp ECTT--------S-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----TTEEEE
T ss_pred ECCC--------C-----CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----CCeEEE
Confidence 6644 2 3467899999999853 333 359999999872 247999
Q ss_pred EeeCCC---ccccccCHHHHHHHHHH
Q 008073 423 VMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 423 ~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+||.++ ++|+++++.+|++++.+
T Consensus 394 ~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 394 QGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp EEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred EccccCEEEECCEEeCHHHHHHHHHh
Confidence 999998 88999999999998886
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.17 E-value=2.5e-09 Score=116.87 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=86.5
Q ss_pred ccCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCCCCc-ceeccCCceEEEEeeCCC
Q 008073 292 KLWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDM 367 (578)
Q Consensus 292 ~lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~-~~~l~~~~~f~EFip~~~ 367 (578)
...++|++ +.+|+. ....+++++.+| ++++ +.||.||+.+............+ .....++ .-.+.+++++
T Consensus 265 ~~~~~lr~---~~~gg~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d~~~ 338 (503)
T 4fuq_A 265 ETTGHMRL---FISGSAPLLADTHREWSAKTG-HAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPALPG-VSARVTDPET 338 (503)
T ss_dssp TTTTTCCE---EEECSSCCCHHHHHHHHHHHS-CCEE-ECCEETTTEECBCCCSSSCCCTTEEEEBCTT-CEEEEECTTT
T ss_pred cchhhcEE---EEECCCCCCHHHHHHHHHHhC-CCcc-ceEcccccCcccccCCCCCCcCCccccCCCC-eEEEEEECCC
Confidence 34567773 355542 445566666675 8888 99999997543211111110001 1112233 4567777553
Q ss_pred CCccccCCceeeccccCCCceEEEEEccC---Cceec--------------cccCCEEEEeeeeCCCCEEEEEeeCCC--
Q 008073 368 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK-- 428 (578)
Q Consensus 368 ~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~-- 428 (578)
+ .++.+|+.+||+|+.. .|.|. |+|||++++.. .-.+.|+||.++
T Consensus 339 -------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~dd~i 402 (503)
T 4fuq_A 339 -------G-----KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHILGRGKDLV 402 (503)
T ss_dssp -------C-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEECCSSTTCE
T ss_pred -------C-----CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEEEecCCCEE
Confidence 2 3467899999999863 45542 99999999943 358999999998
Q ss_pred -ccccccCHHHHHHHHHH
Q 008073 429 -SSFEIISERDLMSAMES 445 (578)
Q Consensus 429 -l~gEkv~e~~v~~av~~ 445 (578)
++|+++...+|++++.+
T Consensus 403 k~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 403 ITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp EETTEEECHHHHHHHHHT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.15 E-value=8e-09 Score=116.77 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=120.9
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhC--CCCccccccccCceee--eeecCCCC--CCCCcceeccCCceEEEEee
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAG--EVPVLGGDYFASECYV--GINLDIAQ--PPQTTRFVMLPTAAYFEFLP 364 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--~v~~~~~~y~asEg~~--~i~~~~~~--~~~~~~~~l~~~~~f~EFip 364 (578)
.++|+++ .+|+. ....+.+.+.+| +++++ +.||.||+.. ..+..... .+...+. ..++ .-...++
T Consensus 377 l~sLr~i---~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g-~~v~i~d 450 (652)
T 1pg4_A 377 RSSLRIL---GSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFG-VQPALVD 450 (652)
T ss_dssp CTTCCEE---EEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTT-CCEEEEC
T ss_pred cCceEEE---EEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCcccc-CcCC-CeEEEEC
Confidence 4677743 44442 444566666675 38999 9999999743 22111000 0010111 2223 2345555
Q ss_pred CCCCCccccCCceeeccccCCCceEEEEEccC-----Ccee----------------ccccCCEEEEeeeeCCCCEEEEE
Q 008073 365 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFV 423 (578)
Q Consensus 365 ~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~f~ 423 (578)
.+ + .++..|+.+||+|+.. .|+| -|+|||++++.. .-.+.|+
T Consensus 451 ~~--------g-----~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i~ 513 (652)
T 1pg4_A 451 NE--------G-----HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWIT 513 (652)
T ss_dssp TT--------C-----CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEE
T ss_pred CC--------C-----CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCcEEEE
Confidence 33 2 3456899999999872 2232 299999999853 2478999
Q ss_pred eeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEee-cCCCCCceEEEEEEeecCccccCCCHHHHHHHHH
Q 008073 424 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCS 499 (578)
Q Consensus 424 gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~-~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~~ 499 (578)
||.|+ ++|+++...+|+++|.+. .+ +.+.+|+. +........+.||.+..+ ...+.+..+++.+
T Consensus 514 GR~dd~Ik~~G~rI~~~eIE~~l~~~-------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~~---~~~~~~~~~~l~~ 581 (652)
T 1pg4_A 514 GRVDDVLNVSGHRLGTAEIESALVAH-------PK--IAEAAVVGIPHAIKGQAIYAYVTLNHG---EEPSPELYAEVRN 581 (652)
T ss_dssp EESSSEEEETTEEEEHHHHHHHHHHS-------TT--EEEEEEEEEEETTTEEEEEEEEEECTT---CCCCHHHHHHHHH
T ss_pred ecCCCEEEECCEEECHHHHHHHHHhC-------CC--cceEEEEEEEcCCCCeEEEEEEEECCC---CCCCHHHHHHHHH
Confidence 99998 889999999999998752 22 34544432 111111234567777543 1122222333444
Q ss_pred HHHHHhChhHHHhhhcCCCCCcEEEEeCC------CcHH--HHHHHHHHcCCCCCCCCCCcccCCHhHHHHHhccce
Q 008073 500 SLEDAFGSIYKVQRDRGEISPLSVSIVKP------GTFD--RLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSL 568 (578)
Q Consensus 500 ~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~------G~f~--~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~~ 568 (578)
.+.+.|. . ...|-.|.+|+. |-.. .+++. ..+. ..+++.+--+.|++.++.+.+.+.
T Consensus 582 ~l~~~l~-~--------~~~P~~i~~v~~lP~T~sGKi~R~~L~~~--~~~~-~~~~~~~~~l~~p~~~~~~~~~~~ 646 (652)
T 1pg4_A 582 WVRKEIG-P--------LATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLADPGVVEKLLEEKQ 646 (652)
T ss_dssp HHHHHTC-G--------GGCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------CCTTHHHHHHHHHH
T ss_pred HHHHhCC-C--------CcCCeEEEEcCCCCCCCCccchHHHHHHH--HhCC-CCCCCCccccCCHHHHHHHHHHhh
Confidence 4444441 1 234666666642 3222 22222 2222 135666778889999988876543
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.15 E-value=3.4e-09 Score=115.86 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=85.7
Q ss_pred ccCCCCceeEEEecCc--hHHHHHHHHHHhCCCCccccccccCceeeee---ecCCC----CCCCCcceeccCCceEEEE
Q 008073 292 KLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIA----QPPQTTRFVMLPTAAYFEF 362 (578)
Q Consensus 292 ~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~asEg~~~i---~~~~~----~~~~~~~~~l~~~~~f~EF 362 (578)
...|+|+.+ +.+|. .....+++++.+++++++ +.||+||+.+.+ ..... ......+. ..++ .-...
T Consensus 258 ~~~~~lr~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i 332 (512)
T 3fce_A 258 SMLPNMKTF--LFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSD-CRLLI 332 (512)
T ss_dssp TTSTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTT-CEEEE
T ss_pred hhCccccEE--EEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccc-ccCC-cEEEE
Confidence 456788733 33333 255567777888889999 999999974322 11100 00000112 2222 33455
Q ss_pred eeCCCCCccccCCceeeccccCCCceEEEEEccC---Ccee-----------------ccccCCEEEEeeeeCCCCEEEE
Q 008073 363 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEF 422 (578)
Q Consensus 363 ip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy-----------------RYr~GDvV~v~g~~~~~P~i~f 422 (578)
++.+ + .++.+|+.+||+|+.. .|.| -|+|||++++ . .-.+.|
T Consensus 333 ~d~~--------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~----dG~l~i 394 (512)
T 3fce_A 333 MKED--------G-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E----NGLLFY 394 (512)
T ss_dssp ECSS--------S-----CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E----TTEEEE
T ss_pred ECCC--------C-----CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c----CCEEEE
Confidence 5533 2 2456899999999863 4544 2999999987 2 347999
Q ss_pred EeeCCC---ccccccCHHHHHHHHHH
Q 008073 423 VMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 423 ~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+||.++ ++|+++++.+|++++.+
T Consensus 395 ~GR~~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 395 NGRLDFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp EEEGGGCEEETTEEECHHHHHHHHHH
T ss_pred ecccCCEEEECCEEECHHHHHHHHHh
Confidence 999998 88999999999998875
No 13
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.14 E-value=7e-10 Score=123.17 Aligned_cols=108 Identities=11% Similarity=0.114 Sum_probs=69.0
Q ss_pred cccCCCceEEEEEccC---Ccee----------------------ccccCCEEEEeeeeCCCCEEEEEeeCCC---cccc
Q 008073 381 SGVEIGKMYEVVVTTY---RGFY----------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFE 432 (578)
Q Consensus 381 ~ele~G~~YelVvTt~---~GLy----------------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gE 432 (578)
.++.+|+.+||+|+.. .|.| .|||||++++.. -.+.|+||.++ ++|+
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----G~l~~~GR~dd~Ik~~G~ 466 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----NELYVTGRIKDLIIIYGK 466 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----TEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----CEEEEEcCccceEEECCE
Confidence 3467899999999873 3332 699999998852 25999999998 8899
Q ss_pred ccCHHHHHHHHHHHHHHhccccCceeEEEEEe--ecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh
Q 008073 433 IISERDLMSAMESFQMMLRNVMAVEIVEFAGY--TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF 505 (578)
Q Consensus 433 kv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~--~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L 505 (578)
++++.+|++++..... ++...+.+++ .+.. ....+++++...+ ..+....+++.+.+.+.|
T Consensus 467 ~v~p~eIE~~l~~~~~------~v~~~~~~v~~~~~~~--~~~~~~~v~~~~~----~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 467 NHYPQDIEFSLMHSPL------HHVLGKCAAFVIQEEH--EYKLTVMCEVKNR----FMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp TTHHHHHHHHHHHSGG------GGGEEEEEEEEEEETT--EEEEEEEEEESCT----TCCHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHhcCc------cccCccEEEEEecCCC--CceEEEEEEeccc----cccchhHHHHHHHHHHHH
Confidence 9999999999855333 3322223322 2221 2455678887543 112233344455555555
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.13 E-value=5.6e-10 Score=122.25 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=81.2
Q ss_pred ccCCCCceeEEEecCc--hHHHHHHHHHHhCCCCccccccccCceeeeee---cCCC----CCCCCcceeccCCceEEEE
Q 008073 292 KLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIA----QPPQTTRFVMLPTAAYFEF 362 (578)
Q Consensus 292 ~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~---~~~~----~~~~~~~~~l~~~~~f~EF 362 (578)
.-.|+|+.+ +.+|. .....+++.+.+++++++ +.||+||+.+.+. .... .... ......++ .-.+.
T Consensus 261 ~~~~~lr~~--~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~vG~p~~~-~~~~i 335 (521)
T 3l8c_A 261 AKMPALTHF--YFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRL-PIGYPKPD-SPTYI 335 (521)
T ss_dssp TTCTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSC-EEEEECTT-SCEEE
T ss_pred ccCccceEE--EEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcc-ccccccCC-CEEEE
Confidence 345777733 33343 245556777778789999 9999999743221 1100 0000 01112233 23556
Q ss_pred eeCCCCCccccCCceeeccccCCCceEEEEEccC---Ccee-----------------ccccCCEEEEeeeeCCCCEEEE
Q 008073 363 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEF 422 (578)
Q Consensus 363 ip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy-----------------RYr~GDvV~v~g~~~~~P~i~f 422 (578)
++.+ + .++.+|+.+||+|+.. .|.| -|+|||++++.. .-.+.|
T Consensus 336 ~d~~--------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG~l~~ 398 (521)
T 3l8c_A 336 IDED--------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DNILLY 398 (521)
T ss_dssp ECTT--------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SSCEEE
T ss_pred ECCC--------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CCeEEE
Confidence 6643 2 3467899999999873 4444 299999999853 347899
Q ss_pred EeeCCC---ccccccCHHHHHHHHHH
Q 008073 423 VMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 423 ~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+||.++ ++|+++++.+|++++.+
T Consensus 399 ~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 399 GGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp EEEGGGBCC-----CBHHHHHHHHHT
T ss_pred eCcccceEeECCEEeCHHHHHHHHHc
Confidence 999998 88999999999988875
No 15
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.11 E-value=2.7e-09 Score=117.55 Aligned_cols=132 Identities=13% Similarity=0.114 Sum_probs=88.1
Q ss_pred ccCCCCceeEEEecCc---hHHHHHHHHHHhCCCCccccccccCceee--eeecC----CC-CCCCCcceeccCCceEEE
Q 008073 292 KLWPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV--GINLD----IA-QPPQTTRFVMLPTAAYFE 361 (578)
Q Consensus 292 ~lWP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~asEg~~--~i~~~----~~-~~~~~~~~~l~~~~~f~E 361 (578)
.-.++|+.+ .+|+ .....+++++.+++++++ +.||.||+.. +.... +. ..+...+. ..++ .-++
T Consensus 294 ~~l~~lr~i---~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~ 367 (536)
T 3ni2_A 294 HDLSSLRMI---KSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRN-AEMK 367 (536)
T ss_dssp SCCTTCCEE---EEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSS-CEEE
T ss_pred CCCccceEE---EECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCC-cEEE
Confidence 346778733 4443 255567778888889999 9999999742 22211 00 01111112 2233 3467
Q ss_pred EeeCCCCCccccCCceeeccccCCCceEEEEEccC---Ccee--------------ccccCCEEEEeeeeCCCCEEEEEe
Q 008073 362 FLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVM 424 (578)
Q Consensus 362 Fip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~f~g 424 (578)
.+++++ + ..+.+|+.+||+|+.. .|.| .|||||++++.. .-.+.|+|
T Consensus 368 i~d~~~-------~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~G 431 (536)
T 3ni2_A 368 IVDPET-------G-----ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDELFIVD 431 (536)
T ss_dssp EECTTT-------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEE
T ss_pred EEeCCC-------C-----cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceEEEEe
Confidence 777553 2 3456899999999863 3443 299999999843 34799999
Q ss_pred eCCC---ccccccCHHHHHHHHHH
Q 008073 425 RAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 425 R~~~---l~gEkv~e~~v~~av~~ 445 (578)
|.++ ++|++++..+|++++.+
T Consensus 432 R~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 432 RLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp ECSCCEEETTEEECHHHHHHHHHT
T ss_pred cccceEEECCEEECHHHHHHHHHh
Confidence 9998 88999999999988875
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.11 E-value=1.1e-09 Score=119.67 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=71.7
Q ss_pred CCCCceeEEEecCchHHHHHHHHHHhCCCCccccccccCceee--eeecCCCCCCCCcceeccCCceEEEEeeCCCCCcc
Q 008073 294 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNE 371 (578)
Q Consensus 294 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~asEg~~--~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~~ 371 (578)
.+.|+ .+.+|+.....+++++.+++++++ +.||.||+.. ........+ ...+. ..++ .-++.++.+.
T Consensus 271 l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~-~~~G~-p~~~-~~~~i~d~~~---- 339 (509)
T 3ivr_A 271 LASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRP-KSAGR-PLFW-RTVAVVDAED---- 339 (509)
T ss_dssp GTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGST-TSCCE-ECTT-CEEEEECTTS----
T ss_pred hhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCC-Ccccc-cCCC-cEEEEECCCC----
Confidence 45666 345555557777888888889999 9999999743 222111111 11122 2233 3466776442
Q ss_pred ccCCceeeccccCCCceEEEEEccC---Cceec-------------cccCCEEEEeeeeCCCCEEEEEeeC--CC---cc
Q 008073 372 AVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRA--PK---SS 430 (578)
Q Consensus 372 ~~~~~~l~~~ele~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~f~gR~--~~---l~ 430 (578)
.++.+|+.+||+|+.. .|.|+ |+|||++++.. .-.+.|+||. ++ ++
T Consensus 340 ---------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d~ik~~ 406 (509)
T 3ivr_A 340 ---------RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKELIKTG 406 (509)
T ss_dssp ---------CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC---------
T ss_pred ---------CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcceeEEEC
Confidence 3467899999999874 56665 99999999843 3579999998 65 78
Q ss_pred ccccCHHHHHHHHHHH
Q 008073 431 FEIISERDLMSAMESF 446 (578)
Q Consensus 431 gEkv~e~~v~~av~~~ 446 (578)
|++++..+|++++.+.
T Consensus 407 G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 407 GENVYPAEVEGALKQH 422 (509)
T ss_dssp ----------------
T ss_pred CEEECHHHHHHHHHhC
Confidence 9999999999988764
No 17
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.10 E-value=8.6e-09 Score=112.50 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=84.0
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCCCCcceeccCCceEEEEeeCCCCCc
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 370 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~~~~l~~~~~f~EFip~~~~~~ 370 (578)
+++|+. +++|+. ....+++++.+| ++++ +.||.||+.+.+...... .. ......++ .-...++.+..
T Consensus 271 l~~lr~---~~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~-~~-~~g~p~~~-~~~~i~~~~~~-- 340 (504)
T 1t5h_X 271 LDSLRH---VTFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLYMRQPK-TG-TEMAPGFF-SEVRIVRIGGG-- 340 (504)
T ss_dssp CTTCCE---EEECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEEEESCS-SS-SEEBCCTT-CCEEEECTTSC--
T ss_pred CccccE---EEEcCCcCCHHHHHHHHHhcC-ccee-eeeccccccccccccCCC-CC-ccccCCCC-CceeEEeccCC--
Confidence 577773 344442 455567777775 7888 999999984443221111 11 11111122 23445554321
Q ss_pred cccCCceeeccccCCCceEEEEEc-cC---Cceec-------------cccCCEEEEeeeeCCCCEEEEEeeCCC---cc
Q 008073 371 EAVGEETVDFSGVEIGKMYEVVVT-TY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 430 (578)
Q Consensus 371 ~~~~~~~l~~~ele~G~~YelVvT-t~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---l~ 430 (578)
.. ..+.+|+.+||+|+ .. .|.|+ |+|||++++.. .-.+.|+||.++ ++
T Consensus 341 ---~~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik~~ 408 (504)
T 1t5h_X 341 ---VD-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDMIISG 408 (504)
T ss_dssp ---TT-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCEEET
T ss_pred ---CC-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCEEEEC
Confidence 01 24678999999998 32 56665 99999999853 247999999998 88
Q ss_pred ccccCHHHHHHHHHH
Q 008073 431 FEIISERDLMSAMES 445 (578)
Q Consensus 431 gEkv~e~~v~~av~~ 445 (578)
|+++...+|++++.+
T Consensus 409 G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 409 GENIHPSEIERVLGT 423 (504)
T ss_dssp TEEECHHHHHHHHTT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999988874
No 18
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.10 E-value=1.9e-09 Score=118.04 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCCCC-cceeccCCceEEEEeeCCCCCccccCCceeeccccCCCc
Q 008073 309 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT-TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGK 387 (578)
Q Consensus 309 ~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~-~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G~ 387 (578)
....+++++.+ +++++ +.||.||+.+............ ......++ .-++.++.+. ..+. .+..|+
T Consensus 286 ~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~-~~~~i~d~~g--------~~~~--~~~~g~ 352 (505)
T 3nyq_A 286 VHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGVPLPG-VELRLVEEDG--------TPIA--ALDGES 352 (505)
T ss_dssp HHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEECTT-CEEEEC-------------CCC--CCCSCC
T ss_pred HHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCcccCCCC-CEEEEECCCC--------CCcc--cCCCCc
Confidence 44456666666 48999 9999999855332221111100 11112233 3466666442 2221 233589
Q ss_pred eEEEEEccC---Cceec--------------cccCCEEEEeeeeCCCCEEEEEeeCC-C---ccccccCHHHHHHHHHH
Q 008073 388 MYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAP-K---SSFEIISERDLMSAMES 445 (578)
Q Consensus 388 ~YelVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~f~gR~~-~---l~gEkv~e~~v~~av~~ 445 (578)
.+||+|+.. .|.|. |||||++++.. .-.+.|+||.+ + ++|+++...+|++++.+
T Consensus 353 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGRKATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp CEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEESSCCCEEETTEEECHHHHHHHHTT
T ss_pred eEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCCccCceEEeCCEEECHHHHHHHHHH
Confidence 999999864 44442 99999999843 34799999974 5 88999999999988875
No 19
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.10 E-value=2e-09 Score=119.07 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=87.6
Q ss_pred cCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCCCC-cceeccCCceEEEEeeCCCC
Q 008073 293 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT-TRFVMLPTAAYFEFLPFDME 368 (578)
Q Consensus 293 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~-~~~~l~~~~~f~EFip~~~~ 368 (578)
-+++|+. +.+|+. ...++++++.+|+++++ +.||.||+...+...+...... ......++ .-.+.+++++
T Consensus 307 ~l~~lr~---i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~- 380 (548)
T 2d1s_A 307 DLSNLVE---IASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGKVVPL-FKAKVIDLDT- 380 (548)
T ss_dssp CCTTCCE---EEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBEECTT-CEEEEECTTT-
T ss_pred cccceeE---EEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCccCCC-ceEEEEeCCc-
Confidence 3577773 344442 55667788888888999 9999999743221111111100 11112333 4567777543
Q ss_pred CccccCCceeeccccCCCceEEEEEccC---Ccee--------------ccccCCEEEEeeeeCCCCEEEEEeeCCC---
Q 008073 369 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 428 (578)
Q Consensus 369 ~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~--- 428 (578)
+ .++.+|+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||.++
T Consensus 381 ------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~~d~ik 445 (548)
T 2d1s_A 381 ------K-----KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDRLKSLIK 445 (548)
T ss_dssp ------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEEGGGCBC
T ss_pred ------C-----ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEeccccceEE
Confidence 2 2456899999999874 3333 499999999853 236999999998
Q ss_pred ccccccCHHHHHHHHHH
Q 008073 429 SSFEIISERDLMSAMES 445 (578)
Q Consensus 429 l~gEkv~e~~v~~av~~ 445 (578)
++|+++++.+|++++.+
T Consensus 446 ~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 446 YKGYQVPPAELESVLLQ 462 (548)
T ss_dssp BTTCCBCHHHHHHHHHT
T ss_pred ECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.05 E-value=8.1e-09 Score=117.00 Aligned_cols=235 Identities=15% Similarity=0.123 Sum_probs=116.7
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhC--CCCccccccccCceee--eeecC-CCCC--CCCcceeccCCceEEEEe
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAG--EVPVLGGDYFASECYV--GINLD-IAQP--PQTTRFVMLPTAAYFEFL 363 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g--~v~~~~~~y~asEg~~--~i~~~-~~~~--~~~~~~~l~~~~~f~EFi 363 (578)
.++|+ ++.+|+. ....+.+++.+| +++++ +.||.||+.. ..+.. ...+ +...+. ..++ .-.+.+
T Consensus 383 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g-~~v~i~ 456 (663)
T 1ry2_A 383 LKSLR---CLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFG-IDAVVL 456 (663)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTT-CCEEEE
T ss_pred cCceE---EEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCcccc-CcCC-CeEEEE
Confidence 46676 4455543 444566666665 38999 9999999642 22211 0001 111112 2223 235666
Q ss_pred eCCCCCccccCCceeeccccCC-CceEEEEEccC-----Ccee----------------ccccCCEEEEeeeeCCCCEEE
Q 008073 364 PFDMEKNEAVGEETVDFSGVEI-GKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVE 421 (578)
Q Consensus 364 p~~~~~~~~~~~~~l~~~ele~-G~~YelVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~ 421 (578)
++++ ++ ++.. |+.+||+|+.. .|+| .|+|||++++.. .-.+.
T Consensus 457 d~~~-------g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~ 520 (663)
T 1ry2_A 457 DPNT-------GE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----DGYIW 520 (663)
T ss_dssp CSSS-------TT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----TCCEE
T ss_pred cCCC-------CC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----CCCEE
Confidence 6422 22 2345 89999999873 2333 299999999853 23689
Q ss_pred EEeeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHHH
Q 008073 422 FVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRRC 497 (578)
Q Consensus 422 f~gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~-~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~ 497 (578)
|+||.|+ +.|+++...+|+++|.+. .+ +.+.+|+.- ........+.||.+..+........+.++++
T Consensus 521 i~GR~dd~Ik~~G~rI~~~eIE~~l~~~-------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l 591 (663)
T 1ry2_A 521 ILGRVDDVVNVSGHRLSTAEIEAAIIED-------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDI 591 (663)
T ss_dssp ECSCTTSCBCSSSCCBCHHHHHHHHHSS-------TT--EEEEEEECCCCCTTSCCCEEEEEEC------------CCSH
T ss_pred EEeecCCEEEECCEEcCHHHHHHHHHhC-------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHH
Confidence 9999998 889999999999888742 22 445554431 1111123456776653300000001100012
Q ss_pred HHHHHHHhChhHHHhhhcC-CCCCcEEEEeCC---CcHHHHHHHHHHcCCCC--CCCCCCcccCCHhHHHHHhc
Q 008073 498 CSSLEDAFGSIYKVQRDRG-EISPLSVSIVKP---GTFDRLLQVAIEKGAPA--SQYKPPKIVRNREIVEFMEG 565 (578)
Q Consensus 498 ~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~---G~f~~~~~~~~~~G~~~--~Q~K~Pr~~~~~~~~~~l~~ 565 (578)
.++|.+.+ ..+ .+ ...|-+|.+|+. ..=.+..+..+.+-... .+++.+-.+.|++.++.+.+
T Consensus 592 ~~~l~~~l-----~~~-L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~ 659 (663)
T 1ry2_A 592 KKHLVFTV-----RKD-IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLID 659 (663)
T ss_dssp HHHHHHHH-----HHH-TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHHH
T ss_pred HHHHHHHH-----HHh-CCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHH
Confidence 23333333 111 22 346777777653 10011222223321112 26778888999999998866
No 21
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.03 E-value=4.2e-09 Score=116.33 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=66.8
Q ss_pred cCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCCCCc-ceeccCCceEEEEeeCCCC
Q 008073 293 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDME 368 (578)
Q Consensus 293 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~~~~-~~~l~~~~~f~EFip~~~~ 368 (578)
-+++|+. +.+|+. ....+++++.+|...++ +.||.||+...+...+......+ .....++ .-.+.+++++
T Consensus 305 ~l~~lr~---i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~-~~~~i~d~~~- 378 (550)
T 3rix_A 305 DLSNLHE---IASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKVVPF-FEAKVVDLDT- 378 (550)
T ss_dssp CCTTCCE---EEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEECTT-CEEEEECTTT-
T ss_pred CcccccE---EEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccccCC-cEEEEEeCCC-
Confidence 3577773 344442 55567777778644477 99999997443222221111111 1222333 4567777654
Q ss_pred CccccCCceeeccccCCCceEEEEEccC---Ccee--------------ccccCCEEEEeeeeCCCCEEEEEeeCCC---
Q 008073 369 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 428 (578)
Q Consensus 369 ~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~--- 428 (578)
+ .++.+|+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||.++
T Consensus 379 ------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik 443 (550)
T 3rix_A 379 ------G-----KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIVDRLKSLIK 443 (550)
T ss_dssp ------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC--------
T ss_pred ------C-----cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEEecchheeE
Confidence 2 2456899999999863 3443 299999999943 347999999998
Q ss_pred ccccccCHHHHHHHHHHH
Q 008073 429 SSFEIISERDLMSAMESF 446 (578)
Q Consensus 429 l~gEkv~e~~v~~av~~~ 446 (578)
++|++++..+|++++.+.
T Consensus 444 ~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 444 YKGYQVAPAELESILLQH 461 (550)
T ss_dssp ------------------
T ss_pred ECCEEECHHHHHHHHHhC
Confidence 889999999999998864
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.03 E-value=6.9e-09 Score=115.36 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=83.6
Q ss_pred CCCCceeEEEecCc--hHHHHHHHHHHhCCCCccccccccCceeeeeecCCC--CCCCCcceeccCCceEEEEeeCCCCC
Q 008073 294 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPPQTTRFVMLPTAAYFEFLPFDMEK 369 (578)
Q Consensus 294 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~--~~~~~~~~~l~~~~~f~EFip~~~~~ 369 (578)
.++|+.+ +.+|. ....++++++.+ +++++ +.||.||+.+.+...+. ......+. ..++ .-++.++.+
T Consensus 321 ~~~lr~i--~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~--- 391 (570)
T 3c5e_A 321 FPHLQNC--VTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASC-YDVQIIDDK--- 391 (570)
T ss_dssp CTTCCEE--EEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTT-CCEEEECTT---
T ss_pred cccceEE--EEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCC-ceEEEECCC---
Confidence 5777743 33333 245556677767 48888 99999997543322211 11111112 2223 345666643
Q ss_pred ccccCCceeeccccCCCceEEEEEc-----c---CCcee-------------ccccCCEEEEeeeeCCCCEEEEEeeCCC
Q 008073 370 NEAVGEETVDFSGVEIGKMYEVVVT-----T---YRGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 428 (578)
Q Consensus 370 ~~~~~~~~l~~~ele~G~~YelVvT-----t---~~GLy-------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~ 428 (578)
+ .++.+|+.+||+|+ . ..|.| .|+|||++++.. .-.+.|+||.++
T Consensus 392 -----g-----~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~GR~dd 457 (570)
T 3c5e_A 392 -----G-----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFMGRADD 457 (570)
T ss_dssp -----S-----CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEEEGGG
T ss_pred -----C-----CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEEecCCC
Confidence 2 24668999999997 2 13444 299999998853 347899999998
Q ss_pred ---ccccccCHHHHHHHHHH
Q 008073 429 ---SSFEIISERDLMSAMES 445 (578)
Q Consensus 429 ---l~gEkv~e~~v~~av~~ 445 (578)
++|+++++.+|++++.+
T Consensus 458 ~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 458 IINSSGYRIGPSEVENALME 477 (570)
T ss_dssp CEEETTEEECHHHHHHHHHT
T ss_pred EEEECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 23
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.02 E-value=1.2e-08 Score=112.35 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCC---CCcceeccCCceEEEEeeCCC
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFDM 367 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~---~~~~~~l~~~~~f~EFip~~~ 367 (578)
.++|+.+ ++|+. ....+++++.+| ++++ +.||.||+.+.+........ ...+. ..++..-...++.+
T Consensus 297 l~~lr~~---~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d~~- 369 (539)
T 1mdb_A 297 LSSLQVL---QVGGAKFSAEAARRVKAVFG-CTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWDDH- 369 (539)
T ss_dssp CTTCCEE---EEESSCCCHHHHTTHHHHTC-SEEE-EEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEECTT-
T ss_pred ccceeEE---EEcCCCCCHHHHHHHHHHhC-CcEE-EEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEECCC-
Confidence 4777733 44432 445566666674 8888 99999998665432111000 00112 12233335556533
Q ss_pred CCccccCCceeeccccCCCceEEEEEccC---Ccee--------------ccccCCEEEEeeeeCCCCEEEEEeeCCC--
Q 008073 368 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 428 (578)
Q Consensus 368 ~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~-- 428 (578)
+ .++.+|+.+||+|+.. .|.| .|||||++++.. .-.+.|+||.++
T Consensus 370 -------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~dd~i 433 (539)
T 1mdb_A 370 -------D-----RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGRAKDQI 433 (539)
T ss_dssp -------S-----CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEEGGGCE
T ss_pred -------C-----CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEeccccceE
Confidence 2 3467899999999864 3433 399999999853 347999999998
Q ss_pred -ccccccCHHHHHHHHHH
Q 008073 429 -SSFEIISERDLMSAMES 445 (578)
Q Consensus 429 -l~gEkv~e~~v~~av~~ 445 (578)
++|+++++.+|++++.+
T Consensus 434 k~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 434 NRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp ECSSCEECHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 24
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=98.99 E-value=4.9e-09 Score=115.77 Aligned_cols=131 Identities=13% Similarity=0.199 Sum_probs=75.9
Q ss_pred cCCCCceeEEEecCc---hHHHHHHHHHH----hC--CCCccccccccCceeeeeecCCC---CCCCCcceeccCCceEE
Q 008073 293 LWPNVRYIKCVTTGS---MSQYCSKIKYY----AG--EVPVLGGDYFASECYVGINLDIA---QPPQTTRFVMLPTAAYF 360 (578)
Q Consensus 293 lWP~L~~i~~~~~G~---~~~y~~~l~~~----~g--~v~~~~~~y~asEg~~~i~~~~~---~~~~~~~~~l~~~~~f~ 360 (578)
-|+.|+++ .+|+ .....+++++. ++ +++++ +.||.||+...+...+. ......+. ..++ .-+
T Consensus 294 ~~~~lr~~---~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~ 367 (549)
T 3g7s_A 294 DWSYLKVF---ATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGV-PMSD-IEL 367 (549)
T ss_dssp CCTTCCEE---EEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCE-ECTT-CEE
T ss_pred CccceeEE---EeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCccc-cCCC-CEE
Confidence 46777733 4444 24444556655 54 28888 99999997432211110 00110112 2233 356
Q ss_pred EEeeCCCCCccccCCceeeccccCCCceEEEEEccC---Ccee------------------ccccCCEEEEeeeeCCCCE
Q 008073 361 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------------RYRLGDIVKVVDFYNSSPQ 419 (578)
Q Consensus 361 EFip~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy------------------RYr~GDvV~v~g~~~~~P~ 419 (578)
+.+++++ +. ++.+|+.+||+|+.. .|.| .|||||++++.. .-.
T Consensus 368 ~i~d~~~-------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~----dG~ 431 (549)
T 3g7s_A 368 KVISLED-------GR-----ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE----EGF 431 (549)
T ss_dssp EEECSSS-------CC-----EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT----TSC
T ss_pred EEEeCCC-------Cc-----CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC----Cce
Confidence 7777553 22 356899999999863 2332 699999999843 357
Q ss_pred EEEEeeCCC---ccccccCHHHHHHHHHH
Q 008073 420 VEFVMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 420 i~f~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+.|+||.++ ++|+++...+|++++.+
T Consensus 432 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 432 LHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp EEEEEEC------------CHHHHHHHTT
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHh
Confidence 999999998 88999999999988875
No 25
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=98.97 E-value=5.8e-09 Score=115.20 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=49.9
Q ss_pred ccCCCceEEEEEccC---Cceec-------------cccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHH
Q 008073 382 GVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSA 442 (578)
Q Consensus 382 ele~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~a 442 (578)
++.+|+.+||+|... .|.|. |+|||++++ . .-.+.|+||.++ ++|++++..+|+++
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 356899999999874 45554 999999987 3 348999999998 88999999999988
Q ss_pred HHHH
Q 008073 443 MESF 446 (578)
Q Consensus 443 v~~~ 446 (578)
+.+.
T Consensus 480 l~~~ 483 (576)
T 3gqw_A 480 AEQE 483 (576)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 8763
No 26
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.96 E-value=1e-08 Score=114.91 Aligned_cols=130 Identities=13% Similarity=0.177 Sum_probs=84.7
Q ss_pred cCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCC---CCcceeccCCceEEEEeeCC
Q 008073 293 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFD 366 (578)
Q Consensus 293 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~---~~~~~~l~~~~~f~EFip~~ 366 (578)
-.++|+.+ .+|+. ....+++++.+ +++++ +.||.||+.+.......... ...+..+.++ .-+..++.+
T Consensus 300 ~l~~lr~i---~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~~ 373 (617)
T 3rg2_A 300 QLASLKLL---QVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD-DEVWVADAE 373 (617)
T ss_dssp TTTTCCEE---EEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTT-CEEEEECTT
T ss_pred cCCCccEE---EEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCC-ceEEEECCC
Confidence 46777743 44442 44556666666 48999 99999998654321111000 0011222222 234555533
Q ss_pred CCCccccCCceeeccccCCCceEEEEEccC---Cceec--------------cccCCEEEEeeeeCCCCEEEEEeeCCC-
Q 008073 367 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 428 (578)
Q Consensus 367 ~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~- 428 (578)
+ ..+.+|+.+||+|+.. .|.|. |||||++++.. .-.++|+||.|+
T Consensus 374 --------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~~GR~dd~ 436 (617)
T 3rg2_A 374 --------G-----NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITVQGREKDQ 436 (617)
T ss_dssp --------S-----CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEECSSE
T ss_pred --------C-----CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEEEeecCCE
Confidence 2 3466899999999764 44442 99999999843 347999999998
Q ss_pred --ccccccCHHHHHHHHHH
Q 008073 429 --SSFEIISERDLMSAMES 445 (578)
Q Consensus 429 --l~gEkv~e~~v~~av~~ 445 (578)
++|+++...+|++++.+
T Consensus 437 iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 437 INRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEETTEEEEHHHHHHHHTT
T ss_pred EEECCEEeCHHHHHHHHHh
Confidence 89999999999988875
No 27
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.94 E-value=5.9e-09 Score=115.07 Aligned_cols=131 Identities=12% Similarity=0.095 Sum_probs=68.8
Q ss_pred CCCCceeEEEecCc--hHHHHHHHHHHhCCCCccccccccCceeeeeecCCCCCC---CCcceeccCCceEEEEeeCCCC
Q 008073 294 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFDME 368 (578)
Q Consensus 294 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~asEg~~~i~~~~~~~~---~~~~~~l~~~~~f~EFip~~~~ 368 (578)
.++|+.+ +.+|. .....+++++.+ +++++ +.||.||+.+.......... ...+..+.+ ..-++.++.+
T Consensus 306 ~~~lr~i--~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~-- 378 (544)
T 3o83_A 306 IQSLKLL--QVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS-DDEIKIVDEQ-- 378 (544)
T ss_dssp HTTCCEE--EEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT--
T ss_pred CCcceEE--EEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCC-CcEEEEECCC--
Confidence 4677733 23333 245556677777 48998 99999998654321111000 001122222 3345666633
Q ss_pred CccccCCceeeccccCCCceEEEEEccC---Ccee--------------ccccCCEEEEeeeeCCCCEEEEEeeCCC---
Q 008073 369 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 428 (578)
Q Consensus 369 ~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~--- 428 (578)
+ .++.+|+.+||+|+.. .|.| .|||||++++.. .-.+.|+||.++
T Consensus 379 ------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik 443 (544)
T 3o83_A 379 ------Y-----REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVVGRIKDQIN 443 (544)
T ss_dssp ------S-----CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEEEEEC----
T ss_pred ------C-----CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEEeecCCEEE
Confidence 2 3467899999999874 3444 399999999843 357999999998
Q ss_pred ccccccCHHHHHHHHHHH
Q 008073 429 SSFEIISERDLMSAMESF 446 (578)
Q Consensus 429 l~gEkv~e~~v~~av~~~ 446 (578)
++|+++++.+|++++.+.
T Consensus 444 ~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 444 RGGEKIASEEIEKLILLH 461 (544)
T ss_dssp ------------------
T ss_pred eCCEEECHHHHHHHHHhC
Confidence 889999999999998864
No 28
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=98.94 E-value=8.6e-09 Score=113.04 Aligned_cols=126 Identities=18% Similarity=0.140 Sum_probs=78.1
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceee--eeecCC--CCCCCCcceeccCCceEEEEeeCC
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDI--AQPPQTTRFVMLPTAAYFEFLPFD 366 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~--~i~~~~--~~~~~~~~~~l~~~~~f~EFip~~ 366 (578)
.|+|+ .+++|+. ....+.+++. +++++ +.||.||+.. .+.... .......+. ..+ ..-++.++.+
T Consensus 283 ~~~lr---~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~ 354 (517)
T 3r44_A 283 APDFR---YFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGR-ATM-FTDVAVRGDD 354 (517)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBE-ECT-TEEEEEECTT
T ss_pred CCccc---EEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCc-CCC-CeEEEEECCC
Confidence 46777 3455553 3333444443 58999 9999999733 221111 111111111 122 2234444432
Q ss_pred CCCccccCCceeeccccCCCceEEEEEccC---Cceec-------------cccCCEEEEeeeeCCCCEEEEEeeCCC--
Q 008073 367 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK-- 428 (578)
Q Consensus 367 ~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~-- 428 (578)
+. .+..| .+||+|+.. .|.|. |||||++++.. .-.+.|+||.++
T Consensus 355 --------~~-----~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~dd~i 416 (517)
T 3r44_A 355 --------GV-----IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRLKDMI 416 (517)
T ss_dssp --------SC-----EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECGGGCE
T ss_pred --------CC-----CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCCcCEE
Confidence 22 23467 899999873 55553 99999999943 347999999998
Q ss_pred -ccccccCHHHHHHHHHH
Q 008073 429 -SSFEIISERDLMSAMES 445 (578)
Q Consensus 429 -l~gEkv~e~~v~~av~~ 445 (578)
++|+++...+|++++.+
T Consensus 417 k~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 417 ISGGENVYPAEIESVIIG 434 (517)
T ss_dssp EETTEEECHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=98.92 E-value=2.5e-09 Score=118.21 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=64.7
Q ss_pred cCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeeee---ecCCCCCCCCcceeccCCceEEEEeeCC
Q 008073 293 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIAQPPQTTRFVMLPTAAYFEFLPFD 366 (578)
Q Consensus 293 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~i---~~~~~~~~~~~~~~l~~~~~f~EFip~~ 366 (578)
-.++|+.+ .+|+. ....+++++.+ +++++ +.||.||+.+.. +..+..... ......++ .-...++++
T Consensus 292 ~~~~lr~~---~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~-~~G~p~~~-~~~~i~d~~ 364 (562)
T 3ite_A 292 DAPHLVYL---GVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGD-SVAHVLAPG 364 (562)
T ss_dssp GSTTCCEE---EEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTT-EEEEECTT-CEEEEECTT
T ss_pred ccCceEEE---EEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCc-cccccCCC-CeEEEEeCC
Confidence 35677733 44442 33333444433 58899 999999974322 111111111 11112223 345666654
Q ss_pred CCCccccCCceeeccccCCCceEEEEEccC---Ccee---------------ccccCCEEEEeeeeCCCCEEEEEeeCCC
Q 008073 367 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 428 (578)
Q Consensus 367 ~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy---------------RYr~GDvV~v~g~~~~~P~i~f~gR~~~ 428 (578)
.. .++.+|+.+||+|... .|.| .|+|||++++.. .-.+.|+||.++
T Consensus 365 ~~------------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd 428 (562)
T 3ite_A 365 SN------------EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDE 428 (562)
T ss_dssp SS------------CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC--
T ss_pred CC------------CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccC
Confidence 32 2467899999999763 4444 499999999943 347999999998
Q ss_pred ---ccccccCHHHHHHHHHHH
Q 008073 429 ---SSFEIISERDLMSAMESF 446 (578)
Q Consensus 429 ---l~gEkv~e~~v~~av~~~ 446 (578)
+.|+++++.+|+++|.+.
T Consensus 429 ~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 429 QVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp ---------------------
T ss_pred EEeECcEEECHHHHHHHHHhc
Confidence 889999999999998865
No 30
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=98.89 E-value=1.1e-07 Score=103.43 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCceEEEEEccC---Cceec------------cccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHH
Q 008073 385 IGKMYEVVVTTY---RGFYR------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 385 ~G~~YelVvTt~---~GLyR------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+|+.+||+|... .|.|. |+|||++++.. .-.+.|+||.++ ++|+++++.+|++++.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 567899999764 44443 99999999843 358999999998 88999999999888775
No 31
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=98.88 E-value=3.2e-08 Score=109.82 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=80.1
Q ss_pred CCCCceeEEEecCchHHHHHHHHHHhCCCCccccccccCceee--eeec-CCCCCC--CCcceeccCCceEEEEeeCCCC
Q 008073 294 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV--GINL-DIAQPP--QTTRFVMLPTAAYFEFLPFDME 368 (578)
Q Consensus 294 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~asEg~~--~i~~-~~~~~~--~~~~~~l~~~~~f~EFip~~~~ 368 (578)
.++|+. +++|+.....+.++.+...++++ +.||.||+.+ .... ...... ...+. ..++ .-+..++.+
T Consensus 292 ~~~lr~---~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~-- 363 (563)
T 1amu_A 292 ILSIQT---LITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGA-PIQN-TQIYIVDEN-- 363 (563)
T ss_dssp CCSCSE---EEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBE-ECTT-EEEEEECTT--
T ss_pred cccccE---EEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCcccc-eeCC-CEEEEECCC--
Confidence 356663 34444333333344444458888 9999999743 2211 111000 00112 2233 345566533
Q ss_pred CccccCCceeeccccCCCceEEEEEccC---Ccee--------------------ccccCCEEEEeeeeCCCCEEEEEee
Q 008073 369 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------------RYRLGDIVKVVDFYNSSPQVEFVMR 425 (578)
Q Consensus 369 ~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------------RYr~GDvV~v~g~~~~~P~i~f~gR 425 (578)
+ ..+.+|+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||
T Consensus 364 ------~-----~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR 428 (563)
T 1amu_A 364 ------L-----QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGR 428 (563)
T ss_dssp ------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEE
T ss_pred ------c-----CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEecc
Confidence 2 2456899999999764 3333 599999999853 236999999
Q ss_pred CCC---ccccccCHHHHHHHHHH
Q 008073 426 APK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 426 ~~~---l~gEkv~e~~v~~av~~ 445 (578)
.++ +.|+++++.+|++++.+
T Consensus 429 ~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 429 IDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp GGGEEEETTEEEEHHHHHHHHTT
T ss_pred ccCEEEECCEEeCHHHHHHHHHh
Confidence 998 88999999999988875
No 32
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=98.84 E-value=1.5e-08 Score=119.70 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=71.7
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceee--eeecC--CCC-C-CCCcceeccCCceEEEEee
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLD--IAQ-P-PQTTRFVMLPTAAYFEFLP 364 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~--~i~~~--~~~-~-~~~~~~~l~~~~~f~EFip 364 (578)
.++|+ .+.+|+. ....+++++.+++++++ +.||.||+.. ..... ... + .........++ .-++.++
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~i~d 417 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRN-AEMKIVD 417 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSS-CEEEEEC
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCC-cEEEEEe
Confidence 56777 3355542 45557777888889999 9999999743 22211 000 0 00011122333 3467777
Q ss_pred CCCCCccccCCceeeccccCCCceEEEEEccC---Cceec--------------cccCCEEEEeeeeCCCCEEEEEeeCC
Q 008073 365 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAP 427 (578)
Q Consensus 365 ~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~f~gR~~ 427 (578)
+++ + ..+.+|+.+||+|+.. .|.|. |||||++++.. .-.+.|+||.+
T Consensus 418 ~~~-------~-----~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~d 481 (979)
T 3tsy_A 418 PDT-------G-----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDELFIVDRLK 481 (979)
T ss_dssp TTS-------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEESC
T ss_pred CCC-------C-----CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceEEEecCCC
Confidence 553 2 3456899999999863 44442 99999999843 34799999999
Q ss_pred C---ccccccCHHHHHHHHHHH
Q 008073 428 K---SSFEIISERDLMSAMESF 446 (578)
Q Consensus 428 ~---l~gEkv~e~~v~~av~~~ 446 (578)
+ ++|+++...+|++++.+.
T Consensus 482 d~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 482 ELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp C---------------------
T ss_pred CEEEECCEEECHHHHHHHHHhC
Confidence 8 889999999999988764
No 33
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=98.82 E-value=1.6e-07 Score=104.06 Aligned_cols=131 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceee--eee-cCCCCCCCC--cceeccCCceEEEEeeC
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GIN-LDIAQPPQT--TRFVMLPTAAYFEFLPF 365 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~--~i~-~~~~~~~~~--~~~~l~~~~~f~EFip~ 365 (578)
.++|+++ ++|+. .....++.+.+++++++ ++||.||+.. ... ......... ......++ .-+..++.
T Consensus 325 ~~~lr~~---~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~-~~v~i~d~ 399 (570)
T 4gr5_A 325 FEGVRYA---ITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAG-KRAYVLDD 399 (570)
T ss_dssp GTTCSEE---EEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTT-EEEEEECT
T ss_pred CCCceEE---EEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccceeeCC-CEEEEECC
Confidence 5677733 44442 34556667777789999 9999999732 211 111000000 01112233 34555653
Q ss_pred CCCCccccCCceeeccccCCCceEEEEEccC---Ccee----------------------ccccCCEEEEeeeeCCCCEE
Q 008073 366 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY----------------------RYRLGDIVKVVDFYNSSPQV 420 (578)
Q Consensus 366 ~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy----------------------RYr~GDvV~v~g~~~~~P~i 420 (578)
+ + .++.+|+.+||+|... .|.| -|||||++++.. .-.+
T Consensus 400 ~--------~-----~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~----dG~l 462 (570)
T 4gr5_A 400 D--------L-----KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA----DGVL 462 (570)
T ss_dssp T--------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT----TSCE
T ss_pred C--------C-----CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC----CCeE
Confidence 3 2 3467899999999763 4444 299999999843 3479
Q ss_pred EEEeeCCC---ccccccCHHHHHHHHHHH
Q 008073 421 EFVMRAPK---SSFEIISERDLMSAMESF 446 (578)
Q Consensus 421 ~f~gR~~~---l~gEkv~e~~v~~av~~~ 446 (578)
.|+||.++ ++|+++++.+|+++|.+.
T Consensus 463 ~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 463 EYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp EEEEC------------------------
T ss_pred EEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 99999998 889999999999998864
No 34
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.79 E-value=4.4e-08 Score=102.63 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=46.1
Q ss_pred cCCCceEEEEEccC-CceeccccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHHHHH
Q 008073 383 VEIGKMYEVVVTTY-RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQM 448 (578)
Q Consensus 383 le~G~~YelVvTt~-~GLyRYr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~~~~ 448 (578)
+..++.+|+++... ..-.-|||||++++.. -.+.|+||.|+ ++|+++++.+|++++.....
T Consensus 210 ~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~-----~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~ 274 (358)
T 4gs5_A 210 YGVDERGCLHISGAVTNGQTVQTNDLVEIHG-----NAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFH 274 (358)
T ss_dssp EEECTTSEEEEESGGGTTCCEEEEEEEEECS-----SEEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHH
T ss_pred EEecCcCceEEecccccCcceecCCcccccc-----CceEEcccccCeEEECCEEECHHHHHHHHHHhcc
Confidence 44566788888653 1122489999999854 23889999998 88999999999998876543
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.68 E-value=6.6e-07 Score=100.53 Aligned_cols=132 Identities=13% Similarity=0.065 Sum_probs=82.3
Q ss_pred cCCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeee--ee-cCCCCCC--CCcceeccCCceEEEEee
Q 008073 293 LWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVG--IN-LDIAQPP--QTTRFVMLPTAAYFEFLP 364 (578)
Q Consensus 293 lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~--i~-~~~~~~~--~~~~~~l~~~~~f~EFip 364 (578)
-.++|+.+ ++|+. .....++.+.+++++++ +.||.||+.+. .. ....... ........++ .-+..++
T Consensus 274 ~l~~lr~v---~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~-~~~~i~d 348 (620)
T 4dg8_A 274 CLGGLRQL---LTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAG-TAVLLLD 348 (620)
T ss_dssp GGTTCSEE---EEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTT-EEEEEEC
T ss_pred hCCCccEE---EEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceecccC-cEEEEEC
Confidence 35677733 44443 23344444556779999 99999997432 11 1111000 0011112233 3456666
Q ss_pred CCCCCccccCCceeeccccCCCceEEEEEccC---Ccee---------------------ccccCCEEEEeeeeCCCCEE
Q 008073 365 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------------RYRLGDIVKVVDFYNSSPQV 420 (578)
Q Consensus 365 ~~~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy---------------------RYr~GDvV~v~g~~~~~P~i 420 (578)
.+. .. -+.+|+.+||+|... .|.| .|||||+++... .-.+
T Consensus 349 ~~~--------~~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l 412 (620)
T 4dg8_A 349 EHG--------QE----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE----QGRL 412 (620)
T ss_dssp TTS--------CB----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----TSCE
T ss_pred ccC--------CC----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----CCeE
Confidence 442 11 146899999999653 3332 299999999843 3479
Q ss_pred EEEeeCCC---ccccccCHHHHHHHHHH
Q 008073 421 EFVMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 421 ~f~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+|+||.|+ ++|+++...+|++++.+
T Consensus 413 ~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 413 RFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp EEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred EEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 99999998 89999999999988886
No 36
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=98.66 E-value=2.7e-07 Score=101.08 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCCccccccccCce-eeeeecCC-CCCCCCcceeccCCceEEEEeeCCCCCccccCCceeeccccCCC
Q 008073 309 SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDI-AQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIG 386 (578)
Q Consensus 309 ~~y~~~l~~~~g~v~~~~~~y~asEg-~~~i~~~~-~~~~~~~~~~l~~~~~f~EFip~~~~~~~~~~~~~l~~~ele~G 386 (578)
...++++++.+ +++++ +.||.||+ .+.+.... .+... ......++ .-++.++.+ + .++.+|
T Consensus 314 ~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~-~~G~p~~~-~~~~i~d~~--------g-----~~~~~g 376 (529)
T 2v7b_A 314 REIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYG-TTGRPVPG-YEIELRDEA--------G-----HAVPDG 376 (529)
T ss_dssp HHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTT-SCCEECTT-CEEEEECTT--------S-----CBCCTT
T ss_pred HHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccC-CcccCCCC-CEEEEECCC--------C-----CCCCCC
Confidence 55566777777 48999 99999997 33332211 11111 11222333 456777743 2 246689
Q ss_pred ceEEEEEccC---Cceec-------------cccCCEEEEeeeeCCCCEEEEEeeCCC---ccccccCHHHHHHHHHH
Q 008073 387 KMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 387 ~~YelVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~f~gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
+.+||+|+.. .|.|+ |+|||++++.. .-.+.|+||.++ ++|+++++.+|++++.+
T Consensus 377 ~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 377 EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence 9999999874 55553 89999998853 347999999998 78999999999988875
No 37
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.61 E-value=3.6e-06 Score=102.37 Aligned_cols=129 Identities=15% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceeee--e-ecCCCCCC--CCcceeccCCceEEEEeeCC
Q 008073 295 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVG--I-NLDIAQPP--QTTRFVMLPTAAYFEFLPFD 366 (578)
Q Consensus 295 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~~--i-~~~~~~~~--~~~~~~l~~~~~f~EFip~~ 366 (578)
++|+. ++.|+. .....++.+.+++++++ +.||.||+.+. . ........ ........++. -+..++.+
T Consensus 720 ~~lr~---~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~i~d~~ 794 (1304)
T 2vsq_A 720 KGLRC---ILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNA-SVYILNEQ 794 (1304)
T ss_dssp HTCSE---EEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTE-EEEEECTT
T ss_pred CCccE---EEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCceeeCCC-EEEEECCC
Confidence 56663 344442 34445566667778999 99999998542 1 11110000 00011122332 23344432
Q ss_pred CCCccccCCceeeccccCCCceEEEEEccC---Ccee--------------------ccccCCEEEEeeeeCCCCEEEEE
Q 008073 367 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------------RYRLGDIVKVVDFYNSSPQVEFV 423 (578)
Q Consensus 367 ~~~~~~~~~~~l~~~ele~G~~YelVvTt~---~GLy--------------------RYr~GDvV~v~g~~~~~P~i~f~ 423 (578)
. ..+.+|+.+||+|... .|.| .|||||+++... .-.++|+
T Consensus 795 --------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~ 857 (1304)
T 2vsq_A 795 --------S-----QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DGTIEYA 857 (1304)
T ss_dssp --------S-----CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TSCEEEE
T ss_pred --------c-----CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CCeEEEE
Confidence 2 2356899999999763 2322 499999999843 3479999
Q ss_pred eeCCC---ccccccCHHHHHHHHHH
Q 008073 424 MRAPK---SSFEIISERDLMSAMES 445 (578)
Q Consensus 424 gR~~~---l~gEkv~e~~v~~av~~ 445 (578)
||.|+ ++|+++...+|+.++.+
T Consensus 858 GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 858 GRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred cCCCCEEEECCEeeCHHHHHHHHHh
Confidence 99998 89999999999998876
No 38
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.57 E-value=3.4e-07 Score=100.82 Aligned_cols=128 Identities=21% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCCCceeEEEecCch---HHHHHHHHHHhCCCCccccccccCceee-eeecCCCC-----C-------CCCcceeccCCc
Q 008073 294 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQ-----P-------PQTTRFVMLPTA 357 (578)
Q Consensus 294 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~asEg~~-~i~~~~~~-----~-------~~~~~~~l~~~~ 357 (578)
.++|+. +++|+. ....+++ +.+ +++++ +.||.||+.. ........ + ....+. ..++
T Consensus 292 l~~lr~---i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~- 363 (541)
T 1v25_A 292 LKTLRR---LVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL-PIPL- 363 (541)
T ss_dssp CSSCCE---EEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBE-ECTT-
T ss_pred chhccE---EEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCC-cCCC-
Confidence 366763 344443 3444555 345 58998 9999999743 22111110 0 000112 2223
Q ss_pred eEEEEeeCCCCCccccCCceeeccccCC--CceEEEEEccC---Cceec--------------cccCCEEEEeeeeCCCC
Q 008073 358 AYFEFLPFDMEKNEAVGEETVDFSGVEI--GKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSP 418 (578)
Q Consensus 358 ~f~EFip~~~~~~~~~~~~~l~~~ele~--G~~YelVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P 418 (578)
.-++.++.+ ++ ++.. |+.+||+|+.. .|.|. |+|||++++.. .-
T Consensus 364 ~~~~i~d~~--------g~-----~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG 426 (541)
T 1v25_A 364 VRLRVADEE--------GR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EG 426 (541)
T ss_dssp CEEEEECTT--------SC-----BCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TC
T ss_pred cEEEEECCC--------CC-----CCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----Cc
Confidence 345666643 22 2332 36899999863 45442 99999999853 34
Q ss_pred EEEEEeeCCC---ccccccCHHHHHHHHHHH
Q 008073 419 QVEFVMRAPK---SSFEIISERDLMSAMESF 446 (578)
Q Consensus 419 ~i~f~gR~~~---l~gEkv~e~~v~~av~~~ 446 (578)
.+.|+||.++ ++|++++..+|++++.+.
T Consensus 427 ~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 427 YVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp CEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred eEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 7999999998 889999999999998864
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=97.89 E-value=3.3e-05 Score=82.94 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=17.7
Q ss_pred CCCeeEEEecccCCCCcceeeecchhHHHH
Q 008073 89 VDPLVCFFYSSGTSSMKPKLIPYFDSALSK 118 (578)
Q Consensus 89 ~~pi~~F~~TSGTT~G~~K~IP~T~~~l~~ 118 (578)
++.+.+...||||| |+||-+..|...+..
T Consensus 182 ~~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 182 YPSTAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp CCSEEEEECC-------CCCEEEEHHHHHH
T ss_pred CCceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 44566778899999 999999999887643
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=95.71 E-value=0.015 Score=49.63 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred eCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHH
Q 008073 425 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSL 501 (578)
Q Consensus 425 R~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~~~l 501 (578)
|.|| ++|.++++.+|+++|.+. .++. ..+++..+.........++||...+ ...+...++++++.|
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~-------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~~---~~~~~~~~~~l~~~i 70 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF-------KELG-SDYLITLETAESNDEMTVEVELSQL---FTDDYGRLQALTREI 70 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC-------TTEE-EEEEEEEEEETTEEEEEEEEEECTT---CCCCHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC-------CCcc-cceEEEEeccccceeEEEEEEEeec---cccccchhhhhHHHH
Confidence 7777 899999999999888753 2321 1344433322222345578887643 224455666677777
Q ss_pred HHHhChhHHHhhhcCCCCCcEEEEeCCCcHH
Q 008073 502 EDAFGSIYKVQRDRGEISPLSVSIVKPGTFD 532 (578)
Q Consensus 502 d~~Ln~~Y~~~R~~g~l~p~~v~~v~~G~f~ 532 (578)
.+++ +....+ ++.|.+|++|+++
T Consensus 71 ~~~l-------~~~~gv-~~~v~~v~~~~lP 93 (109)
T 3lax_A 71 TRQL-------KDEILV-TPRVKLVPKGALP 93 (109)
T ss_dssp HHHH-------HHHHSS-CCEEEEECTTCSC
T ss_pred HHHH-------HHHhCC-ccceEEEcCCeec
Confidence 7766 211124 4579999999988
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=95.45 E-value=0.021 Score=48.89 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=55.0
Q ss_pred eeCCC---ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 008073 424 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS 500 (578)
Q Consensus 424 gR~~~---l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~~~ 500 (578)
||.++ ++|.++++.+|++++.+. + ++. ..|++..+.....-..++++|+ .+. ...+....++++..
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p------~v~-~~~~v~v~~~~~~e~l~~~ve~-~~~--~~~~~~~~~~l~~~ 69 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K------ELG-SDYLITLETAESNDEMTVEVEL-SQL--FTDDYGRLQALTRE 69 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T------TEE-EEEEEEEEEETTEEEEEEEEEE-CTT--CCCCHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C------CcC-CcEEEEEEcCCCceEEEEEEEE-cCc--cccchhHHHHHHHH
Confidence 78888 889999999999998863 2 221 1455433321122356689998 431 00112344456666
Q ss_pred HHHHhChhHHHhhhcCCCCCcEEEEeCCCcHHH
Q 008073 501 LEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 533 (578)
Q Consensus 501 ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~G~f~~ 533 (578)
|.+.+ +..-.+. +.|.+|++|++++
T Consensus 70 i~~~l-------~~~~~~~-~~v~~v~~~~lPr 94 (109)
T 3gxs_A 70 ITRQL-------KDEILVT-PRVKLVPKGALPK 94 (109)
T ss_dssp HHHHH-------HHHHSSC-CEEEEECTTCSCC
T ss_pred HHHHH-------HHhhCCc-eEEEEECCCCccC
Confidence 66666 2222244 4999999999874
No 42
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=63.75 E-value=3.1 Score=44.64 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=17.8
Q ss_pred cCCCeeEEEecccCCCCcceeeecchhHH
Q 008073 88 AVDPLVCFFYSSGTSSMKPKLIPYFDSAL 116 (578)
Q Consensus 88 ~~~pi~~F~~TSGTT~G~~K~IP~T~~~l 116 (578)
.++.+.+...||||| |+||-+..|...+
T Consensus 181 ~~~d~a~i~~TSGTT-G~PKgv~~sh~~l 208 (529)
T 2v7b_A 181 GCDDIAFWLYSSGST-GKPKGTVHTHANL 208 (529)
T ss_dssp CTTSEEEEEEC------CCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCC-CCCceEEEEhhHH
Confidence 345566778899999 9999999998754
No 43
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=54.43 E-value=30 Score=27.23 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=36.0
Q ss_pred cccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEe
Q 008073 432 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 480 (578)
Q Consensus 432 Ekv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 480 (578)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+..
T Consensus 16 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~d-gki~~yqV~lKV 63 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEG-GRVNHWQVTVKV 63 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865566777777776643 345789876654
No 44
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=53.74 E-value=33 Score=26.95 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=37.8
Q ss_pred cccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEe
Q 008073 432 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 480 (578)
Q Consensus 432 Ekv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 480 (578)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+..
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV 62 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEV 62 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998866667788888877654 356899976664
No 45
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=49.52 E-value=1.4e+02 Score=26.45 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=59.1
Q ss_pred EEEEeeCCC--ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHH
Q 008073 420 VEFVMRAPK--SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRC 497 (578)
Q Consensus 420 i~f~gR~~~--l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~ 497 (578)
|.|+++... +.++ ..+.+.+.+.+++. . .++.+.+|++.+| |..++|++... . .-......+
T Consensus 25 iv~~~k~R~~vf~~~--~~~~l~~~l~~~~~--~--~~~~i~a~~vmpD------HVHlLv~~~p~---~-slS~~~~~l 88 (159)
T 2vjv_A 25 IVWCPKYRRKVLVGA--VEMRLKEIIQEVAK--E--LRVEIIEMQTDKD------HIHILADIDPS---F-GVMKFIKTA 88 (159)
T ss_dssp EEECBGGGCCCCSHH--HHHHHHHHHHHHHH--H--TTCEEEEEEEETT------EEEEEEECCTT---T-CHHHHHHHH
T ss_pred EEEeccCCccccCcc--HHHHHHHHHHHhhc--c--CCEEEEEEeecCC------cEEEEEecCCC---c-chhHHHhhc
Confidence 344444333 4443 45778888888887 4 5899999997755 88899987532 1 111222222
Q ss_pred HHHHHHHhChhHHHhhhc-CCC--CCcEEEEeCCCcHHHHHHHH
Q 008073 498 CSSLEDAFGSIYKVQRDR-GEI--SPLSVSIVKPGTFDRLLQVA 538 (578)
Q Consensus 498 ~~~ld~~Ln~~Y~~~R~~-g~l--~p~~v~~v~~G~f~~~~~~~ 538 (578)
...--..+|..|...+.. |.+ ..--+..|...++....++.
T Consensus 89 K~~sSr~i~~~~~~~~~~~~~lWq~~Y~~~tv~~~~~~~i~~YI 132 (159)
T 2vjv_A 89 KGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYI 132 (159)
T ss_dssp HHHHHHHHHHHCHHHHHSCSCSBCSCEEEEEECSSCHHHHHHHH
T ss_pred cccccHHHHHHchhhhhcCccceeCCEEeEEeCCccHHHHHHHH
Confidence 222222234444332222 445 55567778766888888875
No 46
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=49.44 E-value=38 Score=26.34 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=36.5
Q ss_pred cccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEe
Q 008073 432 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 480 (578)
Q Consensus 432 Ekv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 480 (578)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+..
T Consensus 13 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV 60 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQV 60 (68)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865566777777776644 346799976665
No 47
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=41.23 E-value=38 Score=26.37 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=35.9
Q ss_pred cccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEe
Q 008073 432 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 480 (578)
Q Consensus 432 Ekv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 480 (578)
.+..|+.+++||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+..
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkV 62 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGE-AGVKEYQVVLEV 62 (69)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865566777777766643 345789876654
No 48
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=39.98 E-value=42 Score=26.15 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEe
Q 008073 432 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 480 (578)
Q Consensus 432 Ekv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~ 480 (578)
.+..|+.++.||.+|.+.+.++.++.+.+..+..+. +.-.||.+-+..
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkv 62 (69)
T 2yiz_A 15 PDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVD-GAVAHFQVTMKV 62 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEE
Confidence 567799999999999998865566777777766643 345789876654
No 49
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=31.47 E-value=98 Score=26.38 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCCC----CCCChhHHHHHHHHHhC-CCCHHHHHHHHHHhcCCCc
Q 008073 233 FESKWEQLCDDLENGYPC----LDITEVAMRDSVIEVLG-GPQPDLSKRIRSICGESNW 286 (578)
Q Consensus 233 l~~~w~~l~~dI~~gti~----~~i~~~~iR~~l~~~lg-~p~p~rA~~L~~~~~~~~~ 286 (578)
.++.-.+++..+.+..-. ..++..+|+..+.++.. .|+|+-.+++++.....||
T Consensus 42 tdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~GW 100 (112)
T 2m0n_A 42 TEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGGW 100 (112)
T ss_dssp CHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcCC
Confidence 477778888888665442 23777789999999885 4999998889888877554
No 50
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=28.11 E-value=1.9e+02 Score=24.34 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCChhHHHHHHHHHhC-CCCHHHHHHHHHHhcCCCc
Q 008073 233 FESKWEQLCDDLENGYPCL-DITEVAMRDSVIEVLG-GPQPDLSKRIRSICGESNW 286 (578)
Q Consensus 233 l~~~w~~l~~dI~~gti~~-~i~~~~iR~~l~~~lg-~p~p~rA~~L~~~~~~~~~ 286 (578)
.+++-.+++..+.+..-.. .++..+|+..+.++.. .|+|+-.+++++.....||
T Consensus 45 tddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~GW 100 (107)
T 3ol3_A 45 TEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASVGW 100 (107)
T ss_dssp CHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhcCC
Confidence 4777778888777655433 3777899999999986 4889999999988887554
No 51
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=27.71 E-value=2.9e+02 Score=23.71 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=31.9
Q ss_pred ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEeec
Q 008073 429 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 482 (578)
Q Consensus 429 l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~ 482 (578)
+.++ ..+.+.+++.+++. . .++.+.+|++.+| |..++|++..
T Consensus 38 f~~~--~~~~l~~~l~~~~~--~--~~~~i~a~~vmpD------HvHlLv~~~p 79 (143)
T 2fyx_A 38 LVDE--VADGLKDILRDIAT--Q--NGLELVALEVMPD------YVHLLLGATP 79 (143)
T ss_dssp CCHH--HHHHHHHHHHHHHH--H--TTCEEEEEEECSS------EEEEEEEECT
T ss_pred cChH--HHHHHHHHHHHHHh--h--cCeEEEEEEecCC------eEEEEEecCC
Confidence 4444 56778888888877 4 5899999987755 8899998753
No 52
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=23.89 E-value=3.2e+02 Score=22.88 Aligned_cols=101 Identities=8% Similarity=0.099 Sum_probs=55.0
Q ss_pred EEEEeeCCC-ccccccCHHHHHHHHHHHHHHhccccCceeEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHH
Q 008073 420 VEFVMRAPK-SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCC 498 (578)
Q Consensus 420 i~f~gR~~~-l~gEkv~e~~v~~av~~~~~~l~~~~g~~l~~f~~~~~~~~~~~~y~l~vE~~~~~~~~~~~~~~l~~~~ 498 (578)
|.|++.... +-++. ....+.+++..++. . .++.+.+|++.+| |..++|++... ..+..+.
T Consensus 17 i~~~~~~R~~v~~~~-~~~~l~~~l~~~~~--~--~~~~i~a~~impd------HvHllv~~~~~--------~~ls~~~ 77 (133)
T 2f5g_A 17 FVWIPKHRRNTLVNE-IAEYTKEVLKSIAE--E--LGCEIIALEVMPD------HIHLFVNCPPR--------YAPSYLA 77 (133)
T ss_dssp EEECBSSCTTCSCHH-HHHHHHHHHHHHHH--H--HTCEEEEEEEETT------EEEEEEECCTT--------SCHHHHH
T ss_pred EEEecCcchhhhchh-HHHHHHHHHHHHHH--h--CCeEEeeeeecCC------cEEEEEEecCC--------ccHHHHH
Confidence 344443333 33333 45567788888877 4 5889999997755 89999987532 1122233
Q ss_pred HHHHH----HhChhHHHhhhcCCC--CCcEEEEeCCCcHHHHHHHHHH
Q 008073 499 SSLED----AFGSIYKVQRDRGEI--SPLSVSIVKPGTFDRLLQVAIE 540 (578)
Q Consensus 499 ~~ld~----~Ln~~Y~~~R~~g~l--~p~~v~~v~~G~f~~~~~~~~~ 540 (578)
..+.. .+|..|...+ .|.+ ..--...|...+++...++...
T Consensus 78 ~~lK~~ss~~i~~~~~~~~-~~~lWq~~y~~~~i~~~~~~~i~~YI~~ 124 (133)
T 2f5g_A 78 NYFKGKSARLILKKFPQLN-KGKLWTRSYFVATAGNVSSEVIKKYIEE 124 (133)
T ss_dssp HHHHHHHHHHHHHHCGGGC-SSCSBCSCEEEEEEBCCCHHHHHHHHHH
T ss_pred HHHhhHhHHHHHHhchhhc-CCCEEEcCeeeEeecCCCHHHHHHHHHh
Confidence 33332 2233222211 2334 3445666765567766665433
No 53
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=22.04 E-value=47 Score=28.72 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.7
Q ss_pred cCCCceEEEEEccCCc--eeccccCCEE
Q 008073 383 VEIGKMYEVVVTTYRG--FYRYRLGDIV 408 (578)
Q Consensus 383 le~G~~YelVvTt~~G--LyRYr~GDvV 408 (578)
.-.|+.|+++|...+| +|||--|+..
T Consensus 38 f~Sgq~~Df~v~d~~G~~VwrwS~~~~F 65 (120)
T 3isy_A 38 FSTGQKFELVVYDSEHKERYRYSKEKMF 65 (120)
T ss_dssp ESSSCCEEEEEECTTCCEEEETTTTCCC
T ss_pred eCCCCEEEEEEECCCCCEEEEccccchh
Confidence 4589999999999888 9999988865
Done!