Query 008077
Match_columns 578
No_of_seqs 365 out of 1447
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1043 Ca2+-binding transmemb 100.0 4.6E-76 1E-80 630.4 19.6 361 6-367 98-463 (499)
2 PF07766 LETM1: LETM1-like pro 100.0 6.2E-69 1.3E-73 548.6 12.8 265 28-296 3-268 (268)
3 KOG4263 Putative receptor CCR1 100.0 8.9E-31 1.9E-35 257.0 16.8 228 26-299 51-289 (299)
4 COG5126 FRQ1 Ca2+-binding prot 99.2 1.6E-10 3.5E-15 109.9 14.5 142 401-566 14-156 (160)
5 KOG0027 Calmodulin and related 99.2 9.1E-10 2E-14 103.4 15.2 90 477-566 57-149 (151)
6 cd05022 S-100A13 S-100A13: S-1 99.1 2.6E-10 5.6E-15 98.8 6.8 65 503-567 9-76 (89)
7 PF13499 EF-hand_7: EF-hand do 99.0 1.6E-09 3.4E-14 87.2 7.2 62 503-564 1-66 (66)
8 cd05027 S-100B S-100B: S-100B 99.0 1.7E-09 3.7E-14 93.4 7.7 65 503-567 9-80 (88)
9 KOG0030 Myosin essential light 98.9 3.1E-09 6.7E-14 98.1 8.3 84 480-565 64-150 (152)
10 cd05029 S-100A6 S-100A6: S-100 98.9 3.6E-09 7.8E-14 91.4 7.1 75 489-567 1-80 (88)
11 cd05025 S-100A1 S-100A1: S-100 98.8 9.3E-09 2E-13 88.8 8.2 67 501-567 8-81 (92)
12 KOG0028 Ca2+-binding protein ( 98.8 1.5E-08 3.2E-13 95.6 9.7 88 478-566 83-170 (172)
13 KOG0027 Calmodulin and related 98.8 1.1E-08 2.4E-13 96.0 8.3 67 503-569 9-75 (151)
14 cd05031 S-100A10_like S-100A10 98.8 1.4E-08 3.1E-13 88.1 7.8 64 503-566 9-79 (94)
15 cd05026 S-100Z S-100Z: S-100Z 98.8 1E-08 2.3E-13 89.2 6.9 65 503-567 11-82 (93)
16 cd00052 EH Eps15 homology doma 98.7 4.9E-08 1.1E-12 78.0 7.1 60 505-566 2-61 (67)
17 smart00027 EH Eps15 homology d 98.7 6.4E-08 1.4E-12 84.2 7.9 63 503-567 11-73 (96)
18 cd00213 S-100 S-100: S-100 dom 98.6 8E-08 1.7E-12 82.0 7.4 65 503-567 9-80 (88)
19 KOG0031 Myosin regulatory ligh 98.6 2E-06 4.4E-11 80.9 14.8 87 480-567 80-166 (171)
20 cd05023 S-100A11 S-100A11: S-1 98.5 1.8E-07 4E-12 81.0 7.1 65 503-567 10-81 (89)
21 PF13833 EF-hand_8: EF-hand do 98.5 2.2E-07 4.8E-12 72.0 6.3 52 515-566 1-53 (54)
22 PTZ00183 centrin; Provisional 98.5 8.8E-07 1.9E-11 81.9 10.3 83 483-566 72-154 (158)
23 cd00051 EFh EF-hand, calcium b 98.5 5E-07 1.1E-11 68.9 7.2 61 504-564 2-62 (63)
24 PF14658 EF-hand_9: EF-hand do 98.5 3.5E-07 7.6E-12 74.9 6.4 60 507-566 3-64 (66)
25 COG5126 FRQ1 Ca2+-binding prot 98.4 5.6E-07 1.2E-11 85.9 7.8 65 503-568 21-85 (160)
26 PTZ00184 calmodulin; Provision 98.4 1.3E-06 2.9E-11 79.5 9.8 83 482-565 65-147 (149)
27 KOG0028 Ca2+-binding protein ( 98.3 9.1E-07 2E-11 83.7 6.8 65 502-566 33-97 (172)
28 cd00252 SPARC_EC SPARC_EC; ext 98.3 1.8E-06 4E-11 78.4 7.6 59 502-564 48-106 (116)
29 KOG0034 Ca2+/calmodulin-depend 98.2 4.8E-06 1E-10 81.6 9.7 84 483-567 86-176 (187)
30 PTZ00183 centrin; Provisional 98.2 4.5E-06 9.8E-11 77.2 8.4 64 503-566 18-81 (158)
31 cd05030 calgranulins Calgranul 98.2 3.6E-06 7.8E-11 72.5 6.5 65 503-567 9-80 (88)
32 PTZ00184 calmodulin; Provision 98.2 5.6E-06 1.2E-10 75.4 8.2 64 503-566 12-75 (149)
33 KOG0030 Myosin essential light 98.1 4.9E-06 1.1E-10 77.2 5.5 67 503-569 12-80 (152)
34 KOG0031 Myosin regulatory ligh 97.9 3.9E-05 8.4E-10 72.5 8.3 76 477-566 17-92 (171)
35 KOG0037 Ca2+-binding protein, 97.9 4.2E-05 9E-10 76.0 8.8 62 505-566 127-188 (221)
36 KOG0041 Predicted Ca2+-binding 97.9 2.4E-05 5.2E-10 76.6 6.5 68 503-570 100-167 (244)
37 PLN02964 phosphatidylserine de 97.7 9.4E-05 2E-09 84.5 7.8 64 504-567 181-244 (644)
38 KOG0044 Ca2+ sensor (EF-Hand s 97.6 0.00015 3.2E-09 71.5 7.7 84 480-565 80-174 (193)
39 PF00036 EF-hand_1: EF hand; 97.5 9.9E-05 2.2E-09 50.9 3.5 28 504-531 2-29 (29)
40 PLN02964 phosphatidylserine de 97.5 0.00023 5E-09 81.4 8.1 62 503-568 144-209 (644)
41 PF13405 EF-hand_6: EF-hand do 97.5 0.00013 2.8E-09 50.6 3.5 30 503-532 1-31 (31)
42 KOG0038 Ca2+-binding kinase in 97.4 0.00042 9E-09 65.1 7.5 87 482-569 89-180 (189)
43 cd05024 S-100A10 S-100A10: A s 97.4 0.00057 1.2E-08 59.7 7.8 64 503-567 9-77 (91)
44 KOG0377 Protein serine/threoni 97.4 0.00044 9.5E-09 74.6 8.2 65 503-567 548-616 (631)
45 KOG0036 Predicted mitochondria 97.3 0.00056 1.2E-08 73.5 7.4 69 503-571 83-151 (463)
46 PF00036 EF-hand_1: EF hand; 97.3 0.00031 6.7E-09 48.5 3.5 28 539-566 1-28 (29)
47 KOG0044 Ca2+ sensor (EF-Hand s 97.2 0.0023 4.9E-08 63.2 10.0 91 477-568 39-130 (193)
48 PRK12309 transaldolase/EF-hand 97.1 0.0014 3.1E-08 71.2 8.8 53 501-566 333-385 (391)
49 PF12763 EF-hand_4: Cytoskelet 97.0 0.002 4.4E-08 57.6 7.0 62 503-567 11-72 (104)
50 KOG0040 Ca2+-binding actin-bun 96.7 0.0052 1.1E-07 74.2 9.3 84 483-567 2225-2325(2399)
51 KOG0036 Predicted mitochondria 96.7 0.0056 1.2E-07 66.0 8.1 66 501-566 13-79 (463)
52 KOG0046 Ca2+-binding actin-bun 96.6 0.0048 1E-07 68.1 7.3 66 503-569 20-88 (627)
53 PF13202 EF-hand_5: EF hand; P 96.3 0.0039 8.4E-08 41.5 3.0 23 505-527 2-24 (25)
54 PF02037 SAP: SAP domain; Int 96.1 0.009 2E-07 43.0 4.2 34 247-280 2-35 (35)
55 KOG0037 Ca2+-binding protein, 96.0 0.02 4.3E-07 57.2 7.2 64 503-566 58-122 (221)
56 PF13202 EF-hand_5: EF hand; P 95.9 0.0094 2E-07 39.7 3.2 25 540-564 1-25 (25)
57 PF10591 SPARC_Ca_bdg: Secrete 95.8 0.0093 2E-07 54.0 3.6 58 503-562 55-112 (113)
58 KOG4065 Uncharacterized conser 95.6 0.024 5.3E-07 51.5 5.6 57 507-563 72-142 (144)
59 smart00513 SAP Putative DNA-bi 95.5 0.028 6E-07 40.3 4.5 35 246-280 1-35 (35)
60 PF14788 EF-hand_10: EF hand; 95.0 0.055 1.2E-06 42.4 5.2 49 518-566 1-49 (51)
61 PF13405 EF-hand_6: EF-hand do 94.8 0.037 8E-07 38.2 3.5 27 539-565 1-27 (31)
62 KOG1043 Ca2+-binding transmemb 94.5 0.65 1.4E-05 52.0 13.9 265 277-568 44-328 (499)
63 KOG4223 Reticulocalbin, calume 94.4 0.056 1.2E-06 56.9 5.2 61 506-566 167-228 (325)
64 smart00054 EFh EF-hand, calciu 94.2 0.055 1.2E-06 34.3 3.0 26 505-530 3-28 (29)
65 KOG4223 Reticulocalbin, calume 93.9 0.043 9.3E-07 57.8 3.0 57 507-563 246-302 (325)
66 KOG0042 Glycerol-3-phosphate d 93.8 0.084 1.8E-06 59.3 5.2 71 503-573 594-664 (680)
67 PF13833 EF-hand_8: EF-hand do 92.7 0.27 5.9E-06 37.7 5.2 46 483-530 7-53 (54)
68 smart00054 EFh EF-hand, calciu 92.6 0.14 3.1E-06 32.3 3.0 28 539-566 1-28 (29)
69 PF13499 EF-hand_7: EF-hand do 91.6 0.46 1E-05 37.7 5.5 46 483-528 19-66 (66)
70 KOG0034 Ca2+/calmodulin-depend 91.3 0.41 8.9E-06 47.2 5.9 62 506-567 70-133 (187)
71 KOG4251 Calcium binding protei 91.2 0.43 9.4E-06 48.7 5.9 65 501-565 100-167 (362)
72 KOG2243 Ca2+ release channel ( 90.6 1.4 3E-05 53.8 10.0 59 506-565 4061-4119(5019)
73 PF09279 EF-hand_like: Phospho 89.7 0.72 1.6E-05 38.8 5.3 64 503-567 1-70 (83)
74 KOG1029 Endocytic adaptor prot 89.4 0.43 9.4E-06 55.3 4.7 60 503-564 196-255 (1118)
75 KOG1955 Ral-GTPase effector RA 86.8 1.3 2.8E-05 49.3 6.2 63 503-567 232-294 (737)
76 PF02037 SAP: SAP domain; Int 84.5 1.6 3.6E-05 31.3 3.8 35 197-231 1-35 (35)
77 smart00513 SAP Putative DNA-bi 83.0 2 4.3E-05 30.7 3.7 34 198-231 2-35 (35)
78 KOG2643 Ca2+ binding protein, 81.4 1.3 2.9E-05 48.6 3.4 75 483-566 378-453 (489)
79 cd05022 S-100A13 S-100A13: S-1 80.8 4.2 9.1E-05 35.3 5.7 50 481-531 26-76 (89)
80 KOG0035 Ca2+-binding actin-bun 80.4 4.3 9.2E-05 48.5 7.3 80 488-567 732-817 (890)
81 KOG2562 Protein phosphatase 2 79.8 2.6 5.7E-05 46.7 5.0 61 506-569 282-346 (493)
82 PF07766 LETM1: LETM1-like pro 79.7 2 4.4E-05 44.5 4.1 93 21-119 3-100 (268)
83 KOG0377 Protein serine/threoni 78.8 11 0.00023 41.9 9.1 64 503-566 465-575 (631)
84 PF14788 EF-hand_10: EF hand; 77.0 6.8 0.00015 30.9 5.2 47 483-531 4-50 (51)
85 cd05029 S-100A6 S-100A6: S-100 76.1 6.7 0.00015 33.8 5.6 48 483-532 31-81 (88)
86 KOG3555 Ca2+-binding proteogly 75.2 4 8.6E-05 43.8 4.6 61 503-567 251-311 (434)
87 KOG4251 Calcium binding protei 74.2 5.6 0.00012 40.9 5.2 60 504-563 283-342 (362)
88 PF05042 Caleosin: Caleosin re 73.3 12 0.00026 36.7 7.0 63 505-567 10-125 (174)
89 cd05026 S-100Z S-100Z: S-100Z 72.7 5 0.00011 34.8 3.9 29 503-531 54-82 (93)
90 KOG4666 Predicted phosphate ac 72.4 4.1 8.8E-05 43.5 3.9 63 503-566 297-359 (412)
91 cd05030 calgranulins Calgranul 71.6 10 0.00023 32.4 5.7 30 502-531 51-80 (88)
92 cd00051 EFh EF-hand, calcium b 69.8 5.2 0.00011 29.5 3.1 29 540-568 2-30 (63)
93 PF08726 EFhand_Ca_insen: Ca2+ 69.6 3.1 6.6E-05 34.7 1.8 52 503-562 7-65 (69)
94 cd05023 S-100A11 S-100A11: S-1 68.9 6.5 0.00014 34.0 3.8 29 503-531 53-81 (89)
95 cd05027 S-100B S-100B: S-100B 68.1 12 0.00027 32.1 5.4 49 481-531 27-80 (88)
96 KOG3449 60S acidic ribosomal p 65.7 21 0.00046 32.4 6.4 55 504-563 3-57 (112)
97 cd05031 S-100A10_like S-100A10 65.0 4.7 0.0001 34.7 2.2 30 503-532 52-81 (94)
98 KOG3866 DNA-binding protein of 64.7 9.7 0.00021 40.4 4.7 61 506-566 248-324 (442)
99 cd00052 EH Eps15 homology doma 64.5 10 0.00022 29.6 3.9 29 503-531 34-62 (67)
100 cd00252 SPARC_EC SPARC_EC; ext 63.6 9.8 0.00021 34.7 4.1 30 535-564 45-74 (116)
101 KOG2643 Ca2+ binding protein, 63.2 36 0.00078 37.9 8.8 76 483-566 305-384 (489)
102 KOG2562 Protein phosphatase 2 63.1 12 0.00026 41.7 5.3 78 483-562 334-420 (493)
103 cd05025 S-100A1 S-100A1: S-100 62.7 10 0.00022 32.4 3.9 30 503-532 53-82 (92)
104 KOG4578 Uncharacterized conser 60.1 6.9 0.00015 41.8 2.7 64 504-567 335-399 (421)
105 smart00027 EH Eps15 homology d 56.8 14 0.0003 31.9 3.7 29 539-567 11-39 (96)
106 KOG0169 Phosphoinositide-speci 55.5 22 0.00048 41.8 6.0 67 501-567 135-201 (746)
107 KOG1029 Endocytic adaptor prot 54.8 25 0.00055 41.5 6.2 54 506-562 20-73 (1118)
108 PF14899 DUF4492: Domain of un 53.4 44 0.00095 27.6 5.7 20 104-124 37-56 (64)
109 cd00213 S-100 S-100: S-100 dom 51.4 21 0.00045 30.0 3.9 29 503-531 52-80 (88)
110 PF05517 p25-alpha: p25-alpha 49.7 59 0.0013 31.0 7.0 62 506-567 6-70 (154)
111 KOG4666 Predicted phosphate ac 48.6 33 0.00072 36.9 5.5 61 503-563 260-321 (412)
112 cd05024 S-100A10 S-100A10: A s 48.3 46 0.001 29.3 5.5 29 503-531 49-77 (91)
113 KOG2391 Vacuolar sorting prote 47.9 1.1E+02 0.0024 33.1 9.3 31 537-567 312-343 (365)
114 PF12763 EF-hand_4: Cytoskelet 45.7 24 0.00051 31.6 3.4 29 503-531 44-72 (104)
115 TIGR00578 ku70 ATP-dependent D 44.2 31 0.00067 39.9 4.9 39 243-281 545-584 (584)
116 KOG0038 Ca2+-binding kinase in 43.9 26 0.00056 33.7 3.5 64 501-567 73-137 (189)
117 PTZ00373 60S Acidic ribosomal 40.9 95 0.0021 28.4 6.5 52 506-562 7-58 (112)
118 PF14658 EF-hand_9: EF-hand do 40.3 42 0.0009 27.9 3.8 47 483-530 17-64 (66)
119 KOG0041 Predicted Ca2+-binding 39.7 33 0.00071 34.6 3.6 31 539-569 100-130 (244)
120 KOG2871 Uncharacterized conser 37.7 23 0.00051 38.5 2.4 64 501-564 308-372 (449)
121 PF11300 DUF3102: Protein of u 37.5 3.5E+02 0.0077 25.4 10.1 16 246-261 115-130 (130)
122 PRK12309 transaldolase/EF-hand 37.1 41 0.00088 37.1 4.3 30 532-561 328-357 (391)
123 KOG0751 Mitochondrial aspartat 37.1 68 0.0015 36.4 5.9 55 511-567 83-137 (694)
124 smart00540 LEM in nuclear memb 36.5 65 0.0014 24.6 4.0 33 246-278 3-39 (44)
125 cd07313 terB_like_2 tellurium 34.8 47 0.001 28.7 3.5 52 515-566 12-65 (104)
126 COG2058 RPP1A Ribosomal protei 34.4 1.3E+02 0.0028 27.5 6.2 51 508-564 7-57 (109)
127 PF07499 RuvA_C: RuvA, C-termi 34.3 87 0.0019 23.7 4.5 40 521-564 3-42 (47)
128 cd05833 Ribosomal_P2 Ribosomal 33.8 1.4E+02 0.0031 27.0 6.5 54 506-564 5-58 (109)
129 KOG0998 Synaptic vesicle prote 30.3 22 0.00048 42.9 0.9 63 503-567 284-346 (847)
130 PF00404 Dockerin_1: Dockerin 30.2 46 0.001 21.5 2.0 16 548-563 1-16 (21)
131 PF07498 Rho_N: Rho terminatio 30.0 60 0.0013 24.3 2.9 30 247-276 3-34 (43)
132 KOG3555 Ca2+-binding proteogly 28.2 66 0.0014 34.9 3.9 65 499-563 208-275 (434)
133 KOG0751 Mitochondrial aspartat 27.7 1.2E+02 0.0026 34.5 5.9 72 483-560 166-238 (694)
134 PRK06402 rpl12p 50S ribosomal 26.7 2.4E+02 0.0052 25.6 6.6 41 518-563 16-56 (106)
135 PRK10219 DNA-binding transcrip 26.4 4.2E+02 0.0091 22.8 10.5 49 176-236 19-68 (107)
136 cd04411 Ribosomal_P1_P2_L12p R 26.3 2.5E+02 0.0055 25.3 6.8 42 519-565 17-58 (105)
137 PRK11511 DNA-binding transcrip 25.1 5.1E+02 0.011 23.4 10.8 80 176-283 23-103 (127)
138 PF03672 UPF0154: Uncharacteri 24.4 1.4E+02 0.0029 24.8 4.2 32 516-547 29-60 (64)
139 PF07631 PSD4: Protein of unkn 23.9 1.2E+02 0.0026 28.1 4.4 68 223-290 6-73 (128)
140 PRK00523 hypothetical protein; 23.8 1.4E+02 0.003 25.3 4.2 32 516-547 37-68 (72)
141 PRK12768 CysZ-like protein; Re 22.8 1.3E+02 0.0029 30.9 4.9 39 68-106 177-217 (240)
142 KOG1954 Endocytosis/signaling 22.0 91 0.002 34.5 3.6 53 506-561 448-500 (532)
143 PF03683 UPF0175: Uncharacteri 21.8 1.6E+02 0.0034 24.7 4.3 32 246-277 43-74 (76)
144 PF09069 EF-hand_3: EF-hand; 21.7 5.5E+02 0.012 22.5 8.1 62 502-566 3-75 (90)
145 PF08976 DUF1880: Domain of un 21.2 71 0.0015 29.4 2.2 32 534-565 3-34 (118)
146 COG3763 Uncharacterized protei 20.9 1.6E+02 0.0035 24.8 4.0 34 515-548 35-68 (71)
147 PRK15340 transcriptional regul 20.4 3.4E+02 0.0074 27.6 7.1 45 176-232 123-168 (216)
No 1
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=100.00 E-value=4.6e-76 Score=630.41 Aligned_cols=361 Identities=49% Similarity=0.770 Sum_probs=335.6
Q ss_pred Cccchhhhh-cccccchhHHhHhHHHHHHHhhhhHhhhhHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhhhh
Q 008077 6 GYWSCFESC-CFYEQGRLGVKLRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFR 84 (578)
Q Consensus 6 ~~~~~~~~~-~~~s~~~~~~k~~~~~~~~k~~~~hY~~G~KlL~~~~Kis~rL~~k~~~G~~LTRrE~~~L~Rt~~Dl~R 84 (578)
++++..... ++++.+.|+++...|+.+|+++++|||+|||+||.|++++.+++++++.|+.|||||++||.||+.|+||
T Consensus 98 ~~~~~lss~~a~~~~~~~a~~k~s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~ltrrE~~qL~rt~~d~fr 177 (499)
T KOG1043|consen 98 KIKELLSSKHAKKTEAFWAKEKPSLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELTRRERGQLKRTCSDIFR 177 (499)
T ss_pred hchhhccccchhhccccccccCccHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeeeHHHhhhHHhhccchhe
Confidence 345555554 6778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhhhhHHHHHHHHcCCCcchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHH
Q 008077 85 LVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAE 164 (578)
Q Consensus 85 LvPF~vfiiVPF~E~lLPv~lklFPnmLPSTf~~~~q~~~~lkk~l~~R~~~akfLq~t~~~~~~~~~~~~~~~~~~~~~ 164 (578)
||||++|++|||+|++||+++++|||||||||++..+++++..+++..|.++++|||+|+.+|....+.++.+.+.+..
T Consensus 178 LvPfs~flivPf~El~Lp~~lKlfp~~lpstfq~~kk~~~k~~k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~- 256 (499)
T KOG1043|consen 178 LVPFSKFLIVPFMELLLPIFLKLFPNDLPSTFQESKKEEEKLSKKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI- 256 (499)
T ss_pred eccceeeeeeehHHHHhHHHHhhccccchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-
Confidence 9999999999999999999999999999999999988888888888899999999999999999887776666655544
Q ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHHHHHHhhcHhHHH
Q 008077 165 DLDEFMNKVR-TGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQA 243 (578)
Q Consensus 165 ~f~~f~~kv~-~G~~ps~eeil~~aklF~d~l~LdnLsr~qL~alcr~~~l~~fg~~~~LR~rLr~rl~~L~~DD~lI~~ 243 (578)
+|..|+.++| .|..+|+++|+.|+++|+|+.+||||+|+||++||+||+++|||||.+|||+||++|++|+.||..|.+
T Consensus 257 ~fd~f~~kvr~~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik~dD~~I~~ 336 (499)
T KOG1043|consen 257 EFDRFLGKVRFIGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIKKDDKHIAT 336 (499)
T ss_pred HHHHHHHHhcccCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHHhcccccchhh
Confidence 8999999999 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-cCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhcccCCCCChhHHHHHhhhccCCCCChHHHHHHHhcc-CCh
Q 008077 244 EG-VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSS-LPD 320 (578)
Q Consensus 244 EG-V~sLs~~EL~~AC~~RGi~~~-~s~e~Lr~~L~~WL~Ls~~~~vp~sLLlls~a~~~~~~~~~~~~l~~~l~~-lp~ 320 (578)
|| |++|+..||+.||.+|||++. +++++|+.+|..|+++|++++||++||+|||+|+|++.....+.+..+|+. +|+
T Consensus 337 eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~ql~~wldlsl~~~vps~lL~Lsr~~~~~~~~~~~~s~~~~l~~~~~~ 416 (499)
T KOG1043|consen 337 EGAVESLSLLELQIACRERGMRALGVSEERLREQLRVWLDLSLDKKVPSVLLLLSRTFSLGQNSKAPSSSSGKLQIAAPD 416 (499)
T ss_pred hhhhhHhhHHHHHHHHHhhhcchhccchhhhhHHHHHHHhhhccccCchHHHHHhhhhhhhhcccCCchhhhHhhhhccc
Confidence 99 999999999999999999985 788999999999999999999999999999999999887778888888885 999
Q ss_pred hhhhhhcccccCCCcchhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 008077 321 EVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEEQAK 367 (578)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~e~~i~~e~~~~~~~~~~ 367 (578)
.+......++.+++.+.++++.|++.|++||+.|.+|.+++.+....
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~ 463 (499)
T KOG1043|consen 417 DLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGR 463 (499)
T ss_pred cHHHhcccccccccccccchHHHHHhhhccccccchhhhcccccccc
Confidence 99999999998888888999999999999999999999866554433
No 2
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=100.00 E-value=6.2e-69 Score=548.57 Aligned_cols=265 Identities=52% Similarity=0.879 Sum_probs=132.2
Q ss_pred HHHHHHHhhhhHhhhhHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHH
Q 008077 28 HWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKL 107 (578)
Q Consensus 28 ~~~~~~k~~~~hY~~G~KlL~~~~Kis~rL~~k~~~G~~LTRrE~~~L~Rt~~Dl~RLvPF~vfiiVPF~E~lLPv~lkl 107 (578)
.||.+++++++|||+|+|++|.|+|++.++.+|+..|+.|||||+++++||++|++|++||++|++|||+||++|++++|
T Consensus 3 ~~~~~~~~~~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~~~l~~~~~D~~kliP~~i~~~iPf~~~llp~~~~~ 82 (268)
T PF07766_consen 3 KLWPKAKKEYKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRERKQLRRTRRDLLKLIPFLIFLIIPFAEYLLPLLVKY 82 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHhcCCCCCCHHHHHHH
Q 008077 108 FPNMLPSTFQDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAF 187 (578)
Q Consensus 108 FPnmLPSTf~~~~q~~~~lkk~l~~R~~~akfLq~t~~~~~~~~~~~~~~~~~~~~~~f~~f~~kv~~G~~ps~eeil~~ 187 (578)
||+|||||||++.|+.++++++++.|.++++|||+++++++........+ ...+|.+|++++++|.+||++||+++
T Consensus 83 fP~lLPstF~~~~q~~~~~~~~~~~r~~~~~~Lq~~l~~~~~~~~~~~~~----~~~~~~~~~~kv~~~~~~s~~eil~~ 158 (268)
T PF07766_consen 83 FPNLLPSTFWSPSQREEFLKKRLKARKELAKFLQETLEEISKSSKNSNKQ----ERKKLSEFFKKVRSGGHPSNEEILKV 158 (268)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTT-----GGG-SS----HHHHHHHHHHHHHT-BTB-HHHHHHH
T ss_pred hhhcChHHHcccchHHHHHHHHHHHhHhhHHHHHHHHHHhccccccchhh----hHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888754443221 23499999999999999999999999
Q ss_pred HhhcCCccccCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHhcCCCC-C
Q 008077 188 AKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLG-L 266 (578)
Q Consensus 188 aklF~d~l~LdnLsr~qL~alcr~~~l~~fg~~~~LR~rLr~rl~~L~~DD~lI~~EGV~sLs~~EL~~AC~~RGi~~-~ 266 (578)
+++|+|+++||+|+|+||++||++||++||||++++|+||++|+.+|+.||++|.+|||++||.+||+.||++|||++ +
T Consensus 159 ~~lF~d~~~Ld~Lsr~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~dD~~i~~eGv~~Ls~~EL~~Ac~~RGl~~~~ 238 (268)
T PF07766_consen 159 AKLFKDELTLDNLSRPHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQDDRLIKREGVDSLSEEELQDACYERGLRSTG 238 (268)
T ss_dssp HTTS-HHHHHHHS-HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHHHHHHHHH-GGGS-HHHHHHHHHHTT---TT
T ss_pred HHhcCCCcccccCCHHHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred CCHHHHHHHHHHHHhcccCCCCChhHHHHH
Q 008077 267 LSVEEMRQQLRDWLDLSLNHSVPSSLLILS 296 (578)
Q Consensus 267 ~s~e~Lr~~L~~WL~Ls~~~~vp~sLLlls 296 (578)
+|+++||.||.+||++|.+.++|+++||||
T Consensus 239 ~s~~~lr~~L~~WL~ls~~~~~p~~lLlL~ 268 (268)
T PF07766_consen 239 LSEEELREWLKQWLQLSSNKKVPSSLLLLH 268 (268)
T ss_dssp --HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCchhhccC
Confidence 899999999999999999999999999986
No 3
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-31 Score=256.97 Aligned_cols=228 Identities=23% Similarity=0.400 Sum_probs=182.7
Q ss_pred HhHHHHHHHhhhhHhhhhHHHHHHHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHH
Q 008077 26 LRHWKDEFKSTMQHYWLGTKLLWADIRISSRLLLKLVNG----KGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLL 101 (578)
Q Consensus 26 ~~~~~~~~k~~~~hY~~G~KlL~~~~Kis~rL~~k~~~G----~~LTRrE~~~L~Rt~~Dl~RLvPF~vfiiVPF~E~lL 101 (578)
+.+|- ++-....-|..|.+.+|+|+|.+.++.+-+..| +.|+|+|.+.|++++.|+.|+.|..+|+++||+.|+.
T Consensus 51 lg~fP-k~~~Lyr~f~~G~~~~faD~K~~~kikr~~~~~~~k~~~L~~~ElE~l~Qmp~d~~K~a~~~i~~~~P~~~Y~f 129 (299)
T KOG4263|consen 51 LGKFP-KVLALYRTFLEGSRWCFADVKMYFKIKRAVATGQKKLTDLSVEELETLVQMPVDGPKMAIVTIFLPVPLSVYVF 129 (299)
T ss_pred Hhhhh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCccchhhCCHHHHHHHHhccccccceeeeeeccCcchHHHHH
Confidence 34443 466666667899999999999999999888765 5899999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-cchhhcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHhcCC
Q 008077 102 PVFLKLFPNM-LPSTFQDKMREEEA----LKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTG 176 (578)
Q Consensus 102 Pv~lklFPnm-LPSTf~~~~q~~~~----lkk~l~~R~~~akfLq~t~~~~~~~~~~~~~~~~~~~~~~f~~f~~kv~~G 176 (578)
+++++|||+. |..|||+|+|+.+. .++++....++.++|++ +.+.+ ...+..|.+++.++..|
T Consensus 130 f~li~~fPR~~LtrHFWTpqQr~ef~~~y~~~rl~s~~~~~~~l~~---------p~~td---~~k~~~l~dl~~~~~~g 197 (299)
T KOG4263|consen 130 FFLIIFFPRLVLTRHFWTPQQRREFFQLYVTKRLISGEQLLKTLGN---------PSSTD---ENKMKPLDDLDSSEMLG 197 (299)
T ss_pred HHHHHHHHHHHHHHHhCChHhHhHHHHHHHHHHhcccHHHHHHhcC---------ccccC---ccccccHHHHHhHhhhh
Confidence 9999999996 79999999998664 44444444444444442 11111 11233555555555555
Q ss_pred CCCCHHHHHHHHhhcCCccccCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHH
Q 008077 177 AGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQ 256 (578)
Q Consensus 177 ~~ps~eeil~~aklF~d~l~LdnLsr~qL~alcr~~~l~~fg~~~~LR~rLr~rl~~L~~DD~lI~~EGV~sLs~~EL~~ 256 (578)
.| +.++.+.++.++|.||..|+.-|+..|++|.++||++|+.+||+.
T Consensus 198 tH---------------------------------~~l~~yp~p~~~rHRl~~h~~~ih~lD~al~~~gi~~lt~~~l~~ 244 (299)
T KOG4263|consen 198 TH---------------------------------MLLTSYPPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQELKS 244 (299)
T ss_pred hH---------------------------------hhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 54 556778888899999999999999999999999999999999999
Q ss_pred HHHhcCCCCC-CCHHHHHHHHHHHHhcccCCCCC-hhHHHHHhhh
Q 008077 257 ACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVP-SSLLILSRAF 299 (578)
Q Consensus 257 AC~~RGi~~~-~s~e~Lr~~L~~WL~Ls~~~~vp-~sLLlls~a~ 299 (578)
|||-||++.. .++++||+||++|+++|..-+-| -|||+++..|
T Consensus 245 ~CYlRgln~~~~~~~~mr~wLr~wvkiS~Slk~~~~slllh~pvl 289 (299)
T KOG4263|consen 245 ACYLRGLNSTHIGEDRMRTWLREWVKISCSLKEAELSLLLHNPVL 289 (299)
T ss_pred HhhhccCCCCccChHHHHHHHHHHHhhhhcccccchhhhhhhhHH
Confidence 9999999965 89999999999999999874444 4666666655
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.24 E-value=1.6e-10 Score=109.88 Aligned_cols=142 Identities=22% Similarity=0.306 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcCcc-chHHHHHHHHHhhhhcccccCcccccchh
Q 008077 401 EKHEQLCELSRALAVLASASSVSHEREEFLRLVNKEIELYNSMVEKDGKV-GEEEAKKAYRAAREETDQDAGEDVDEKVS 479 (578)
Q Consensus 401 ~~~e~~~~l~~a~~~l~~~~s~~~e~~e~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kas 479 (578)
.+.+|+.++.+|-..+-..++=.-=|.+|-..++ - .+-. .+.++.+-.. +... .+.
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~----------lg~~~s~~ei~~l~~-----------~~d~-~~~ 70 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-S----------LGFNPSEAEINKLFE-----------EIDA-GNE 70 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-H----------cCCCCcHHHHHHHHH-----------hccC-CCC
Confidence 4678999999999999876544444555544433 1 1111 1222221111 0111 334
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHH
Q 008077 480 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVED 559 (578)
Q Consensus 480 ~rL~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dE 559 (578)
..-+..|..+|+...+..+..+ ++..+|++||+|++|+|+..+|+.+++.+|..+++++|+.|+..+|.|+||.|+|++
T Consensus 71 ~idf~~Fl~~ms~~~~~~~~~E-el~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~e 149 (160)
T COG5126 71 TVDFPEFLTVMSVKLKRGDKEE-ELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEE 149 (160)
T ss_pred ccCHHHHHHHHHHHhccCCcHH-HHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHH
Confidence 5558899999998776655544 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 008077 560 IVKLASQ 566 (578)
Q Consensus 560 Fv~lv~~ 566 (578)
|++++..
T Consensus 150 F~~~~~~ 156 (160)
T COG5126 150 FKKLIKD 156 (160)
T ss_pred HHHHHhc
Confidence 9998754
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=9.1e-10 Score=103.38 Aligned_cols=90 Identities=26% Similarity=0.416 Sum_probs=78.1
Q ss_pred chhhhHHHHHHHHHHHHhhhhhh---HHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCC
Q 008077 477 KVSSALINRVDAMLQKLEKEIDD---VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREG 553 (578)
Q Consensus 477 kas~rL~~rv~~Mi~~lek~ide---~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG 553 (578)
..+..-+..|..|+......... -.+++.++|+.||+||+|+||.+||+.+|..+|.+.+.+++..|+..+|.|+||
T Consensus 57 g~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg 136 (151)
T KOG0027|consen 57 GDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDG 136 (151)
T ss_pred CCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCC
Confidence 44556688999988876543322 234799999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhc
Q 008077 554 KILVEDIVKLASQ 566 (578)
Q Consensus 554 ~I~~dEFv~lv~~ 566 (578)
.|+|++|++++..
T Consensus 137 ~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 137 KVNFEEFVKMMSG 149 (151)
T ss_pred eEeHHHHHHHHhc
Confidence 9999999999864
No 6
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.07 E-value=2.6e-10 Score=98.77 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=61.2
Q ss_pred HHHHHHHhhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDR-DYDGKVTAEEVASAAMY-LKDTLDK-EGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDk-dgdG~Is~~EL~~aL~~-LG~~l~e-eeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+..+|+.||+ +++|+|+.+||+.+|+. +|..+++ +++.+|+..+|.|+||.|+|+||+.+|..+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57789999999 99999999999999999 9988998 999999999999999999999999998764
No 7
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.97 E-value=1.6e-09 Score=87.15 Aligned_cols=62 Identities=21% Similarity=0.467 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHH----HHHhhcCCCCCcccHHHHHHHH
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQE----LIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~e----Li~~lD~D~DG~I~~dEFv~lv 564 (578)
++..+|+.||.|++|+|+.+||..+++.+|..++...+.. ++..+|.|+||.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999997776655554 5889999999999999999875
No 8
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.97 E-value=1.7e-09 Score=93.40 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=60.6
Q ss_pred HHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLD-RDYDG-KVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfD-kdgdG-~Is~~EL~~aL~~-----LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+.++|+.|| +||+| +|+.+||+.+|+. +|..++++++.+++..+|.|+||.|+|++|+.++..+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5779999998 89999 5999999999999 8999999999999999999999999999999988654
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.93 E-value=3.1e-09 Score=98.07 Aligned_cols=84 Identities=25% Similarity=0.377 Sum_probs=75.1
Q ss_pred hhH-HHHHHHHHHHHhhhhhh--HHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCccc
Q 008077 480 SAL-INRVDAMLQKLEKEIDD--VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKIL 556 (578)
Q Consensus 480 ~rL-~~rv~~Mi~~lek~ide--~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~ 556 (578)
+|+ |..|..|++++-++.++ ++ ++.+.+++||++|+|+|+..||+++|.++|+.+++++++.++.... |++|.|+
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~e-dfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~ 141 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYE-DFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCIN 141 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHH-HHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCc
Confidence 565 99999999999776553 45 7888999999999999999999999999999999999999999964 8999999
Q ss_pred HHHHHHHHh
Q 008077 557 VEDIVKLAS 565 (578)
Q Consensus 557 ~dEFv~lv~ 565 (578)
|++|++.+-
T Consensus 142 YE~fVk~i~ 150 (152)
T KOG0030|consen 142 YEAFVKHIM 150 (152)
T ss_pred HHHHHHHHh
Confidence 999998764
No 10
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.89 E-value=3.6e-09 Score=91.36 Aligned_cols=75 Identities=12% Similarity=0.260 Sum_probs=63.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhhcC-CC-CCcccHHHHHHHHH---hcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 489 MLQKLEKEIDDVDAKIGDRWRLLDR-DY-DGKVTAEEVASAAM---YLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 489 Mi~~lek~ide~d~el~~aF~lfDk-dg-dG~Is~~EL~~aL~---~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
|++.+++.+. .+...|+.||. || +|+|+.+||+.+|+ .+|.+++++++.+|+..+|.|+||.|+|++|+.+
T Consensus 1 ~~~~~e~~~~----~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 1 MASPLDQAIG----LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred CCcHHHHHHH----HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 3445555443 46689999998 77 89999999999997 3799999999999999999999999999999998
Q ss_pred Hhcc
Q 008077 564 ASQT 567 (578)
Q Consensus 564 v~~~ 567 (578)
+..+
T Consensus 77 m~~l 80 (88)
T cd05029 77 LGAL 80 (88)
T ss_pred HHHH
Confidence 8754
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.85 E-value=9.3e-09 Score=88.84 Aligned_cols=67 Identities=15% Similarity=0.311 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-cCC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 501 DAKIGDRWRLLD-RDYDG-KVTAEEVASAAMY-LKD----TLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 501 d~el~~aF~lfD-kdgdG-~Is~~EL~~aL~~-LG~----~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+.+.++|+.|| +|++| +|+.+||+.+|+. +|. .++++++.+|+..+|.|++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 346889999997 99999 5999999999986 553 5689999999999999999999999999988754
No 12
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=1.5e-08 Score=95.63 Aligned_cols=88 Identities=20% Similarity=0.380 Sum_probs=79.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccH
Q 008077 478 VSSALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILV 557 (578)
Q Consensus 478 as~rL~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~ 557 (578)
+....+..|..+++....+.+..+ ++..+|++||-|++|+|+..+|+.+++.||.+++++++.+||.++|.|+||.|+-
T Consensus 83 ~g~i~fe~f~~~mt~k~~e~dt~e-Ei~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevne 161 (172)
T KOG0028|consen 83 SGKITFEDFRRVMTVKLGERDTKE-EIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNE 161 (172)
T ss_pred CceechHHHHHHHHHHHhccCcHH-HHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccH
Confidence 345668889998888766666444 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 008077 558 EDIVKLASQ 566 (578)
Q Consensus 558 dEFv~lv~~ 566 (578)
++|+.++..
T Consensus 162 eEF~~imk~ 170 (172)
T KOG0028|consen 162 EEFIRIMKK 170 (172)
T ss_pred HHHHHHHhc
Confidence 999998865
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-08 Score=96.03 Aligned_cols=67 Identities=25% Similarity=0.500 Sum_probs=63.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTED 569 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~~~ 569 (578)
++..+|+.||+|++|+|+..+|..+|+.+|..+++.++..++..+|.|+||.|++++|+.++.....
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 6789999999999999999999999999999999999999999999999999999999999886543
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.80 E-value=1.4e-08 Score=88.06 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=58.7
Q ss_pred HHHHHHHhhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 503 KIGDRWRLLDR-DY-DGKVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 503 el~~aF~lfDk-dg-dG~Is~~EL~~aL~~-----LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
.+..+|..||. || +|+|+.+||+.+|+. +|..++++++..++..+|.|+||.|+|++|+.++..
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 67899999997 97 699999999999987 577889999999999999999999999999998764
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.80 E-value=1e-08 Score=89.15 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=56.8
Q ss_pred HHHHHHHhhc-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLD-RDYDG-KVTAEEVASAAMY-L----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfD-kdgdG-~Is~~EL~~aL~~-L----G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+.++|+.|| +||+| +||.+||+.+|+. + +...++.+|.+|+..+|.|+||.|+|+||+.++..+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 5668999998 88998 5999999999977 3 344578899999999999999999999999998654
No 16
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.69 E-value=4.9e-08 Score=77.98 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=55.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 505 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 505 ~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
..+|..+|+|++|.|+.+|+..+++.+| ++.+++..++..+|.|++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4689999999999999999999999987 48899999999999999999999999988754
No 17
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.68 E-value=6.4e-08 Score=84.22 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+..+|..||+|++|.|+.++|+.+|+.+| ++++++..|+..+|.+++|.|+|++|+.++..+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 677999999999999999999999999976 789999999999999999999999999987654
No 18
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.64 E-value=8e-08 Score=81.96 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=58.1
Q ss_pred HHHHHHHhhcC--CCCCcccHHHHHHHHHh-cCCCC----CHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDR--DYDGKVTAEEVASAAMY-LKDTL----DKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDk--dgdG~Is~~EL~~aL~~-LG~~l----~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
++..+|..||+ |++|.|+.++|..+++. +|..+ +++++..|+..+|.|++|.|+|++|+.++...
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 57789999999 89999999999999986 56544 58999999999999999999999999987654
No 19
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.56 E-value=2e-06 Score=80.95 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHH
Q 008077 480 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVED 559 (578)
Q Consensus 480 ~rL~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dE 559 (578)
-..+..|..|++....-.+. ++.|..+|..||.+++|+|..+.|+.+|+.+|+.+++++|..|+...-.|..|.|+|..
T Consensus 80 PINft~FLTmfGekL~gtdp-e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~ 158 (171)
T KOG0031|consen 80 PINFTVFLTMFGEKLNGTDP-EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKA 158 (171)
T ss_pred CeeHHHHHHHHHHHhcCCCH-HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHH
Confidence 45688899998876655555 44899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 008077 560 IVKLASQT 567 (578)
Q Consensus 560 Fv~lv~~~ 567 (578)
|+.++...
T Consensus 159 ~~~~ithG 166 (171)
T KOG0031|consen 159 FTYIITHG 166 (171)
T ss_pred HHHHHHcc
Confidence 99999744
No 20
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.55 E-value=1.8e-07 Score=80.97 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHh-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRL-LDRDYDG-KVTAEEVASAAMYL-----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~l-fDkdgdG-~Is~~EL~~aL~~L-----G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+..+|+. +|+||+| +||.+||+.++... +...++.++.+++..+|.|+||.|+|++|+.++..+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 46689998 7899986 99999999999875 446678899999999999999999999999988765
No 21
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.52 E-value=2.2e-07 Score=72.03 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 515 YDGKVTAEEVASAAMYLKDT-LDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 515 gdG~Is~~EL~~aL~~LG~~-l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
.+|.|+.++|+.+|..+|.. ++++++..|+..+|.|+||.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999889999 99999999999999999999999999998753
No 22
>PTZ00183 centrin; Provisional
Probab=98.48 E-value=8.8e-07 Score=81.93 Aligned_cols=83 Identities=24% Similarity=0.400 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 562 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~ 562 (578)
+..|..++......... ...+..+|..+|.+++|.|+..|+..++..+|..++..++..++..+|.|++|.|++++|+.
T Consensus 72 ~~eF~~~~~~~~~~~~~-~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~ 150 (158)
T PTZ00183 72 FEEFLDIMTKKLGERDP-REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYR 150 (158)
T ss_pred HHHHHHHHHHHhcCCCc-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 55666655543221112 23678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 008077 563 LASQ 566 (578)
Q Consensus 563 lv~~ 566 (578)
++..
T Consensus 151 ~~~~ 154 (158)
T PTZ00183 151 IMKK 154 (158)
T ss_pred HHhc
Confidence 8865
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.48 E-value=5e-07 Score=68.88 Aligned_cols=61 Identities=36% Similarity=0.631 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
+..+|..+|.+++|.|+.+++..+++.+|...+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999999999999998765
No 24
>PF14658 EF-hand_9: EF-hand domain
Probab=98.47 E-value=3.5e-07 Score=74.86 Aligned_cols=60 Identities=13% Similarity=0.334 Sum_probs=56.9
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHhc
Q 008077 507 RWRLLDRDYDGKVTAEEVASAAMYLKD-TLDKEGIQELIANLSKDRE-GKILVEDIVKLASQ 566 (578)
Q Consensus 507 aF~lfDkdgdG~Is~~EL~~aL~~LG~-~l~eeeI~eLi~~lD~D~D-G~I~~dEFv~lv~~ 566 (578)
+|..||+++.|.|.+.+|..+|+.+|. .+++.+++.+...+|.++. |.|++++|+.+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 699999999999999999999999998 8999999999999999887 99999999999864
No 25
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.43 E-value=5.6e-07 Score=85.92 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhccC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 568 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~~ 568 (578)
++.++|.+||+|++|.|+..+|..+|+.+|..+++.++.+|+..+|. +.|.|+|.+|+.++....
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999998 899999999999987654
No 26
>PTZ00184 calmodulin; Provisional
Probab=98.42 E-value=1.3e-06 Score=79.47 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 008077 482 LINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIV 561 (578)
Q Consensus 482 L~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv 561 (578)
-+..|..++........ ....+..+|+.+|.+++|+|+.+++..++..+|..++.+++..++..+|.|++|.|+|++|+
T Consensus 65 ~~~ef~~~l~~~~~~~~-~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 65 DFPEFLTLMARKMKDTD-SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
T ss_pred cHHHHHHHHHHhccCCc-HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHH
Confidence 35667776665322111 22367789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 008077 562 KLAS 565 (578)
Q Consensus 562 ~lv~ 565 (578)
.++.
T Consensus 144 ~~~~ 147 (149)
T PTZ00184 144 KMMM 147 (149)
T ss_pred HHHh
Confidence 8764
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=9.1e-07 Score=83.74 Aligned_cols=65 Identities=32% Similarity=0.468 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 502 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 502 ~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
+++.++|..||.+++|+|.++||..+|+.+|+.+..++|..|+...|.++.|.|+|++|..++..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999998764
No 28
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.30 E-value=1.8e-06 Score=78.39 Aligned_cols=59 Identities=24% Similarity=0.417 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 502 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 502 ~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
..+..+|..+|.|+||+|+.+||..++ + ...+..+..++..+|.|+||.|+++||...+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 368899999999999999999999876 3 3557889999999999999999999999988
No 29
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.25 E-value=4.8e-06 Score=81.65 Aligned_cols=84 Identities=20% Similarity=0.333 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCC--HHHHHH----HHHhhcCCCCCcc
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLD--KEGIQE----LIANLSKDREGKI 555 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~--eeeI~e----Li~~lD~D~DG~I 555 (578)
+..|...++-.... ...+.++.-+|++||.+++|+|+.+||..++..+ |...+ ++.+.. ++.++|.|+||.|
T Consensus 86 F~~Fv~~ls~f~~~-~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I 164 (187)
T KOG0034|consen 86 FEEFVRLLSVFSPK-ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI 164 (187)
T ss_pred HHHHHHHHhhhcCC-ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC
Confidence 45555554443322 2223488899999999999999999999999886 54555 666555 5567899999999
Q ss_pred cHHHHHHHHhcc
Q 008077 556 LVEDIVKLASQT 567 (578)
Q Consensus 556 ~~dEFv~lv~~~ 567 (578)
+|+||.+++...
T Consensus 165 sfeEf~~~v~~~ 176 (187)
T KOG0034|consen 165 SFEEFCKVVEKQ 176 (187)
T ss_pred cHHHHHHHHHcC
Confidence 999999998765
No 30
>PTZ00183 centrin; Provisional
Probab=98.21 E-value=4.5e-06 Score=77.16 Aligned_cols=64 Identities=30% Similarity=0.469 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
++..+|..+|.+++|.|+..|+..+++.+|..++...+..++..+|.|++|.|++++|+.++..
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 5667788888888888888888888887777777777888888888888888888888776543
No 31
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.19 E-value=3.6e-06 Score=72.52 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=56.4
Q ss_pred HHHHHHHhhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRD--YDGKVTAEEVASAAM-YLKDTLD----KEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkd--gdG~Is~~EL~~aL~-~LG~~l~----eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+...|+.++.. ++|+|+.+||+.+|. .+|..++ ++++..++..+|.|+||.|+|++|+.++...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456788888755 479999999999997 6677777 8999999999999999999999999988754
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.18 E-value=5.6e-06 Score=75.36 Aligned_cols=64 Identities=22% Similarity=0.444 Sum_probs=55.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
.+...|..+|.+++|.|+.+++..++..+|..++.+.+..++..+|.+++|.|++++|+.++..
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 5678889999999999999999999888888888888999999999999999999999887764
No 33
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.08 E-value=4.9e-06 Score=77.24 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCC--CCCcccHHHHHHHHhccCC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKD--REGKILVEDIVKLASQTED 569 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D--~DG~I~~dEFv~lv~~~~~ 569 (578)
+++++|.+||..+||+|+..++..+||.+|.++++.+|.+.+...+.+ +-..|+|++|+-+...+.+
T Consensus 12 e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999999999998876 4467999999998877654
No 34
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.92 E-value=3.9e-05 Score=72.47 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=60.6
Q ss_pred chhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCccc
Q 008077 477 KVSSALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKIL 556 (578)
Q Consensus 477 kas~rL~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~ 556 (578)
.+|+-.+..|.+ +||. ++.++|.++|.|+||.|..++|+..+..+|...++++|..|+.+.. |.||
T Consensus 17 rasSnvFamf~q------~QIq----EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~----gPIN 82 (171)
T KOG0031|consen 17 RASSNVFAMFDQ------SQIQ----EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP----GPIN 82 (171)
T ss_pred cccchHHHHhhH------HHHH----HHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCee
Confidence 444555555542 3443 5679999999999999999999999999999999999999999853 6788
Q ss_pred HHHHHHHHhc
Q 008077 557 VEDIVKLASQ 566 (578)
Q Consensus 557 ~dEFv~lv~~ 566 (578)
|.-|+.++..
T Consensus 83 ft~FLTmfGe 92 (171)
T KOG0031|consen 83 FTVFLTMFGE 92 (171)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 35
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.91 E-value=4.2e-05 Score=75.96 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=57.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 505 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 505 ~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
+..|+.||+|++|.|+..||+.||..+|..++.+-++-|++++|.-++|.|.||+|+.++..
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999777999999999987543
No 36
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.88 E-value=2.4e-05 Score=76.65 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=60.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCCc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDT 570 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~~~~ 570 (578)
.+...|..+|.|.||+|+..||+.+|.+||.+-|-=.+..||.+.|.|.||+|+|-+|+-++.....+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag 167 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG 167 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc
Confidence 34489999999999999999999999999987777789999999999999999999998877654333
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=97.66 E-value=9.4e-05 Score=84.52 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=55.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
+..+|..+|.|++|.|+.+|+..+|..+|...+++++.+++..+|.|+||.|+++||..++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 6788888899999999999999888888877888889999999999999999999998887664
No 38
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.63 E-value=0.00015 Score=71.54 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc----CC-------CCCHHHHHHHHHhhc
Q 008077 480 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL----KD-------TLDKEGIQELIANLS 548 (578)
Q Consensus 480 ~rL~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L----G~-------~l~eeeI~eLi~~lD 548 (578)
..-+..|..-++.+.. ..+++++.-+|+++|.||+|+||.+|+-.+++.+ |. .-+++-+..+++.+|
T Consensus 80 ~i~F~Efi~als~~~r--Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D 157 (193)
T KOG0044|consen 80 TIDFLEFICALSLTSR--GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMD 157 (193)
T ss_pred CcCHHHHHHHHHHHcC--CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcC
Confidence 3334444333333322 3456688889999999999999999999887764 32 124566888999999
Q ss_pred CCCCCcccHHHHHHHHh
Q 008077 549 KDREGKILVEDIVKLAS 565 (578)
Q Consensus 549 ~D~DG~I~~dEFv~lv~ 565 (578)
.|+||.|+++||+....
T Consensus 158 ~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 158 KNKDGKLTLEEFIEGCK 174 (193)
T ss_pred CCCCCcccHHHHHHHhh
Confidence 99999999999987654
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.53 E-value=9.9e-05 Score=50.94 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
+..+|+.||+||+|+|+.+|+..+|+.|
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 4466777777777777777777776653
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=97.51 E-value=0.00023 Score=81.45 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHhccC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLK-DTLDKEG---IQELIANLSKDREGKILVEDIVKLASQTE 568 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG-~~l~eee---I~eLi~~lD~D~DG~I~~dEFv~lv~~~~ 568 (578)
++.++|..||+|++|+| |..+++.+| ..+++++ ++.++..+|.|+||.|+++||+.++..+.
T Consensus 144 elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 144 SACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 45556666666666665 666666666 3555555 56666666666666666666666555443
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.47 E-value=0.00013 Score=50.60 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-hcC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAM-YLK 532 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~-~LG 532 (578)
++..+|+.||+|++|+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 366899999999999999999999999 676
No 42
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.44 E-value=0.00042 Score=65.10 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHH----HHHHhhcCCCCCccc
Q 008077 482 LINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQ----ELIANLSKDREGKIL 556 (578)
Q Consensus 482 L~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~eeeI~----eLi~~lD~D~DG~I~ 556 (578)
-++-|.-|.+-... ....+-++.-+|+++|-|+||+|..++|...++.+ ...++++++. .+|.++|.|+||+++
T Consensus 89 sfddFlDmfSV~sE-~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~ 167 (189)
T KOG0038|consen 89 SFDDFLDMFSVFSE-MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLS 167 (189)
T ss_pred cHHHHHHHHHHHHh-hChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCccc
Confidence 36666666665432 22333356678999999999999999999999988 4568888865 467789999999999
Q ss_pred HHHHHHHHhccCC
Q 008077 557 VEDIVKLASQTED 569 (578)
Q Consensus 557 ~dEFv~lv~~~~~ 569 (578)
|.+|-.++....+
T Consensus 168 ~~eFe~~i~raPD 180 (189)
T KOG0038|consen 168 FAEFEHVILRAPD 180 (189)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999877654
No 43
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.43 E-value=0.00057 Score=59.67 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~-----LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+...|+.+- .+.|.++..||+..|.. ++..-+++.|.+++..+|.|+||.|+|.||+.++..+
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4557788886 34679999999999864 3444567889999999999999999999999988654
No 44
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.41 E-value=0.00044 Score=74.65 Aligned_cols=65 Identities=18% Similarity=0.389 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLK----DTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG----~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+...|+.+|.|+.|.||.+|++.+.+-++ .++++++|-++..-+|.|+||+|+++||++.+..+
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 345789999999999999999999987764 46889999999999999999999999999987655
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00056 Score=73.50 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=63.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCCcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDTE 571 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~~~~~ 571 (578)
++...|+.+|.++||.|..+|+...++.+|.+++++++..+++..|.|+++.|++++|...+....+++
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~ 151 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESD 151 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhH
Confidence 677899999999999999999999999999999999999999999999999999999998876655443
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.27 E-value=0.00031 Score=48.51 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 539 GIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 539 eI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
+++++++.+|.|+||+|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999998865
No 47
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.19 E-value=0.0023 Score=63.25 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred chhhhH-HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcc
Q 008077 477 KVSSAL-INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKI 555 (578)
Q Consensus 477 kas~rL-~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I 555 (578)
-++.++ ...|..+++.+-..-+. +.-..-+|+.||.|++|.|+..|+..++..+-..-.++.+.-.+.-+|.|+||+|
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~-~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDA-SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCH-HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceE
Confidence 334444 55577777776432221 1123468999999999999999999998877555678888889999999999999
Q ss_pred cHHHHHHHHhccC
Q 008077 556 LVEDIVKLASQTE 568 (578)
Q Consensus 556 ~~dEFv~lv~~~~ 568 (578)
+.+++++++..+.
T Consensus 118 t~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 118 TKEEMLKIVQAIY 130 (193)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987653
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.15 E-value=0.0014 Score=71.24 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 501 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 501 d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
...+..+|+.||.||+|.|+.+|+. | +..++..+|.|+||.|+++||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~------~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWL------G-------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHH------H-------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4467789999999999999999983 1 578999999999999999999988754
No 49
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.01 E-value=0.002 Score=57.55 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
++...|..+|. ++|+|+.++.+.+++.-| ++.+.+..|..-.|.|+||+++++||+-.|..+
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 56689999986 689999999999998876 999999999999999999999999998765543
No 50
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.74 E-value=0.0052 Score=74.24 Aligned_cols=84 Identities=17% Similarity=0.327 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhhhh----------hHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCC--HH-----HHHHHHH
Q 008077 483 INRVDAMLQKLEKEID----------DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLD--KE-----GIQELIA 545 (578)
Q Consensus 483 ~~rv~~Mi~~lek~id----------e~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~--ee-----eI~eLi~ 545 (578)
..=..+|.++++++|. ++. +..-+|+.||++.+|.++..+++.+|+.+|..+| ++ +++++++
T Consensus 2225 ~qL~~rMqhnlEQqIqarn~~GVtEe~L~-EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld 2303 (2399)
T KOG0040|consen 2225 DQLMMRMQHNLEQQIQARNHNGVTEEQLK-EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILD 2303 (2399)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHH
Confidence 4445568888888873 222 5667999999999999999999999999998763 34 7999999
Q ss_pred hhcCCCCCcccHHHHHHHHhcc
Q 008077 546 NLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 546 ~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
-+|.+.+|.|+..||+..|-..
T Consensus 2304 ~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2304 LVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred hcCCCCcCcccHHHHHHHHHhc
Confidence 9999999999999999987543
No 51
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0056 Score=66.05 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 501 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDT-LDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 501 d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~-l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
+.+++..|+.||.+++|.|+.++|.+.+..++.+ ++..-...+++..|.|.||.++|.||.+-+..
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 4578899999999999999999999999998776 67777888999999999999999999876643
No 52
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.60 E-value=0.0048 Score=68.12 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=58.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCC---CHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTL---DKEGIQELIANLSKDREGKILVEDIVKLASQTED 569 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l---~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~~~ 569 (578)
.+.+.|..+| |++|+|+..++..++...+... ..+++++++...+.|.+|.|+|++|+.++-.+..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 6789999999 9999999999999999887543 4889999999999999999999999997766543
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.35 E-value=0.0039 Score=41.52 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q 008077 505 GDRWRLLDRDYDGKVTAEEVASA 527 (578)
Q Consensus 505 ~~aF~lfDkdgdG~Is~~EL~~a 527 (578)
..+|+.+|.|++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 35667777777777777776654
No 54
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=96.14 E-value=0.009 Score=42.99 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 008077 247 ESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 280 (578)
Q Consensus 247 ~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL 280 (578)
++|+..||+..|..||++..++.++|.+.|.+|+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999999999999999986
No 55
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=95.97 E-value=0.02 Score=57.25 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
.+...|...|+|+.|+|+.+||+.+|... ..+++.+-++-||.-+|.|.+|+|++.||..+-..
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence 56678888999999999999999998754 35688899999999999999999999999887543
No 56
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.92 E-value=0.0094 Score=39.67 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 540 IQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 540 I~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
|+.++..+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 57
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.76 E-value=0.0093 Score=54.02 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 562 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~ 562 (578)
.+.-.|..+|.|+||.++..||..+...+ ...+.-+...+..-|.|+||.|++.|+..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 56678999999999999999999876544 45666789999999999999999999875
No 58
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.024 Score=51.51 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=45.7
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhc------CC-C---CCHHHHHHHHHh----hcCCCCCcccHHHHHHH
Q 008077 507 RWRLLDRDYDGKVTAEEVASAAMYL------KD-T---LDKEGIQELIAN----LSKDREGKILVEDIVKL 563 (578)
Q Consensus 507 aF~lfDkdgdG~Is~~EL~~aL~~L------G~-~---l~eeeI~eLi~~----lD~D~DG~I~~dEFv~l 563 (578)
-|++.|-|++|+++.=||..++.-. |. + +++.++..||+. .|.|+||.|+|.||++-
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5778899999999999999998754 32 1 457787777765 57899999999999864
No 59
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=95.48 E-value=0.028 Score=40.31 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.8
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 008077 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 280 (578)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL 280 (578)
+.+|+..||+..|.++|++..++..+|.+.|.+|+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999888999999999885
No 60
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.03 E-value=0.055 Score=42.39 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 518 KVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 518 ~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
+++..|++..|+.+...+++.-+..++...|.+++|.++.+||......
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999887653
No 61
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.84 E-value=0.037 Score=38.20 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHh
Q 008077 539 GIQELIANLSKDREGKILVEDIVKLAS 565 (578)
Q Consensus 539 eI~eLi~~lD~D~DG~I~~dEFv~lv~ 565 (578)
+++.++..+|.|+||.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 62
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=94.52 E-value=0.65 Score=51.95 Aligned_cols=265 Identities=16% Similarity=0.109 Sum_probs=145.4
Q ss_pred HHHHhcccCCCCChhHHHHHhhhccCCCCChHHHHHHHhccCChhhhhhhcccccCCCcchhhhhhhHHHhHHHHHHHHH
Q 008077 277 RDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKE 356 (578)
Q Consensus 277 ~~WL~Ls~~~~vp~sLLlls~a~~~~~~~~~~~~l~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~e~~i~~ 356 (578)
.+|+.......+|.++..+.++.+.......+..+..+...+++-+-.++.+.....+...+.+..+. +....+
T Consensus 44 ~d~~~~~~~~s~~~s~~~~~~~~~~~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~lss~~a~~~------~~~~a~ 117 (499)
T KOG1043|consen 44 VDKLAWVKTESYKASLYSLLQAVNLISARGNASDLDSSVKVLRELVQQAAPLALKIKELLSSKHAKKT------EAFWAK 117 (499)
T ss_pred HHHHHHHhhhccchhhhhhhhhccccccccchhhhhhhHHHhHHHhhhccchhhhchhhccccchhhc------cccccc
Confidence 78888888888999999999999887655555556655555555433333322111110000000000 001111
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hccccCC-CCChHHHHHHhhhhhhhhHHHHHHHHHHHH---HHhh-cccchHHHHHHH
Q 008077 357 EEEEEEEEQAKMKEAVRSRKD-VALEEMT-DPTAKEAQEQAKAKTLEKHEQLCELSRALA---VLAS-ASSVSHEREEFL 430 (578)
Q Consensus 357 e~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~---~l~~-~~s~~~e~~e~~ 430 (578)
+.. --..+..+...-.-+ ..+-..+ ..+++-+-..+....++ ..+...|.++|+ .|-- +..+.++-.||
T Consensus 118 ~k~---s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~lt-rrE~~qL~rt~~d~frLvPfs~flivPf~El- 192 (499)
T KOG1043|consen 118 EKP---SLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELT-RRERGQLKRTCSDIFRLVPFSKFLIVPFMEL- 192 (499)
T ss_pred cCc---cHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeee-HHHhhhHHhhccchheeccceeeeeeehHHH-
Confidence 100 000000000000000 0000000 11333333445555555 677888999999 4443 56888999884
Q ss_pred HH---HHHHHHHHHHHhhhcCccchHHHHHHHHHhhhhcccccCcccccchhhhHHHHHHHHHHHHhh----hhhhHHHH
Q 008077 431 RL---VNKEIELYNSMVEKDGKVGEEEAKKAYRAAREETDQDAGEDVDEKVSSALINRVDAMLQKLEK----EIDDVDAK 503 (578)
Q Consensus 431 ~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kas~rL~~rv~~Mi~~lek----~ide~d~e 503 (578)
.| +|....++-+..+... ++..+. ....++.+++++.|.+++.+|+..+.. ++.+.- +
T Consensus 193 ~Lp~~lKlfp~~lpstfq~~k--------k~~~k~------~k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~ 257 (499)
T KOG1043|consen 193 LLPIFLKLFPNDLPSTFQESK--------KEEEKL------SKKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-E 257 (499)
T ss_pred HhHHHHhhccccchhhHHHHH--------HHHHHh------hhhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-H
Confidence 45 7777777777776632 222111 112345678899999999999987654 222210 1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcC-----CCCCHHHHHHHHHhhcCCCCCc--ccHHHHHHHHhccC
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYLK-----DTLDKEGIQELIANLSKDREGK--ILVEDIVKLASQTE 568 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~LG-----~~l~eeeI~eLi~~lD~D~DG~--I~~dEFv~lv~~~~ 568 (578)
+..-|..+-. ..+..+.+++..+.+-.. ++++..++..|...++.+..|. +.-..+...|..+.
T Consensus 258 fd~f~~kvr~-~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik 328 (499)
T KOG1043|consen 258 FDRFLGKVRF-IGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIK 328 (499)
T ss_pred HHHHHHHhcc-cCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHHhc
Confidence 2222333322 456678899988866544 4688889999999999999995 55555555555543
No 63
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.056 Score=56.91 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=48.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
..|+.=|.||+|..|.+|+...|.=- -..+..--|.+-+..+|.|+||+|+++||+.=+-.
T Consensus 167 ~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 167 ERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 57899999999999999999876421 12344556788889999999999999999875543
No 64
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.19 E-value=0.055 Score=34.32 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=17.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHh
Q 008077 505 GDRWRLLDRDYDGKVTAEEVASAAMY 530 (578)
Q Consensus 505 ~~aF~lfDkdgdG~Is~~EL~~aL~~ 530 (578)
..+|..+|.+++|.|+.+++..+++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45667777777777777777766654
No 65
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=0.043 Score=57.77 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=50.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 507 RWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 507 aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
.|...|+|+||+++.+||...+.--+......+...|+.+.|.|+||+++++|.+.-
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 345679999999999999988766677788899999999999999999999999864
No 66
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.76 E-value=0.084 Score=59.30 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=63.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCCcchh
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDTETA 573 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~~~~~~~ 573 (578)
.....|..+|.|..|+++++++..+|+..+..++++.+++++.+.|.+.+|++++.+|..++..+..+..+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~ 664 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTE 664 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChH
Confidence 34567899999999999999999999999889999999999999999999999999999999877665443
No 67
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=92.66 E-value=0.27 Score=37.66 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhh-hhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 008077 483 INRVDAMLQKLEKE-IDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMY 530 (578)
Q Consensus 483 ~~rv~~Mi~~lek~-ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~ 530 (578)
...|..++..+... +.+ .++...|..+|.|++|+|+.+|+..+|..
T Consensus 7 ~~~~~~~l~~~g~~~~s~--~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 7 REEFRRALSKLGIKDLSE--EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSCH--HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 45566666444333 333 35778999999999999999999998864
No 68
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.59 E-value=0.14 Score=32.27 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 539 GIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 539 eI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
++..++..+|.|++|.|++++|..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678899999999999999999988764
No 69
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.61 E-value=0.46 Score=37.67 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhh--hhHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 483 INRVDAMLQKLEKEI--DDVDAKIGDRWRLLDRDYDGKVTAEEVASAA 528 (578)
Q Consensus 483 ~~rv~~Mi~~lek~i--de~d~el~~aF~lfDkdgdG~Is~~EL~~aL 528 (578)
...+..++..+.... ...+..+...|+.+|+|++|.|+.+|+..+|
T Consensus 19 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 19 KEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 556666666654322 2334456778999999999999999998775
No 70
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=91.29 E-value=0.41 Score=47.24 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=51.8
Q ss_pred HHHHhhcCCCCCc-ccHHHHHHHHHhcCCCCCHH-HHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 506 DRWRLLDRDYDGK-VTAEEVASAAMYLKDTLDKE-GIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 506 ~aF~lfDkdgdG~-Is~~EL~~aL~~LG~~l~ee-eI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
..|+.||.+++|. |+..++..++...-..-+.+ +++=.++-+|.|+||.|+-+++..++..+
T Consensus 70 rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 70 RIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 5677888888888 99999999998765544444 88888999999999999999999888765
No 71
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=91.18 E-value=0.43 Score=48.74 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHh-cCCCCCH--HHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 008077 501 DAKIGDRWRLLDRDYDGKVTAEEVASAAMY-LKDTLDK--EGIQELIANLSKDREGKILVEDIVKLAS 565 (578)
Q Consensus 501 d~el~~aF~lfDkdgdG~Is~~EL~~aL~~-LG~~l~e--eeI~eLi~~lD~D~DG~I~~dEFv~lv~ 565 (578)
.+++...|...|.|.||+||..|++..++. ...++.+ ++-.-.+...|.|+||.|++++|---+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 346778899999999999999999887654 3322221 2223345668999999999999954433
No 72
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.64 E-value=1.4 Score=53.78 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=52.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 565 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~ 565 (578)
+.|+.+|+||.|.|+..|+..+|... .+.+..+++-+++-...|.+...+|++|++-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 57999999999999999999999765 468999999999999999999999999998654
No 73
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.75 E-value=0.72 Score=38.78 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-CC-CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KD-TLDKEGIQELIANLSKD----REGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~-~l~eeeI~eLi~~lD~D----~DG~I~~dEFv~lv~~~ 567 (578)
+|...|..+-. +.+.+|.++|...|+.- |. ..+.+++..+|..+..+ ..|.++++.|...+..-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 35678888844 78999999999999754 65 57899999999998644 46899999999987544
No 74
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=0.43 Score=55.30 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
++...|+.+|+...|++|...-+.+|..-| ++...+-.|..--|+|+||+++.|||+-.|
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 566889999999999999999999997765 889999999999999999999999997544
No 75
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=1.3 Score=49.27 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
-+.+.|+.+-+|-.|+|+..--+..+.+- +++-.++..|+.--|.|+||.++++||+..+..+
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 46688999999999999999999888764 5888899999999999999999999999987654
No 76
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=84.48 E-value=1.6 Score=31.28 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.8
Q ss_pred cCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHH
Q 008077 197 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRL 231 (578)
Q Consensus 197 LdnLsr~qL~alcr~~~l~~fg~~~~LR~rLr~rl 231 (578)
++.|+.++|...|+-+||++-|+..-|.-||..++
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 45788999999999999999999998888887764
No 77
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=82.96 E-value=2 Score=30.67 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHH
Q 008077 198 DNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRL 231 (578)
Q Consensus 198 dnLsr~qL~alcr~~~l~~fg~~~~LR~rLr~rl 231 (578)
.+|+..+|.+.|+-.|+++.|+..-|..||..++
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 4688899999999999999999998888887653
No 78
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=81.45 E-value=1.3 Score=48.64 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIV 561 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv 561 (578)
++.|...+.. +..++ .+...| ....+.|+..+++++.... |..+++.-++-++.-+|.|+||.++.+||+
T Consensus 378 f~~Ff~Fl~~----l~dfd----~Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl 448 (489)
T KOG2643|consen 378 FKAFFRFLNN----LNDFD----IALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFL 448 (489)
T ss_pred HHHHHHHHhh----hhHHH----HHHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHH
Confidence 5555555443 34444 333333 2357889999999998864 999998877778888999999999999999
Q ss_pred HHHhc
Q 008077 562 KLASQ 566 (578)
Q Consensus 562 ~lv~~ 566 (578)
.++..
T Consensus 449 ~Vmk~ 453 (489)
T KOG2643|consen 449 AVMKR 453 (489)
T ss_pred HHHHH
Confidence 99864
No 79
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=80.84 E-value=4.2 Score=35.31 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHH-HhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 481 ALINRVDAMLQK-LEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 481 rL~~rv~~Mi~~-lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.-...+..++.+ +-..+... .++.+.|+.+|.|+||.|+.+|+..+|..+
T Consensus 26 i~~~ELk~ll~~elg~~ls~~-~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 26 LTASEFQELLTQQLPHLLKDV-EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred ECHHHHHHHHHHHhhhhccCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 335666666665 32223221 367788999999999999999999887665
No 80
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=80.40 E-value=4.3 Score=48.52 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=61.8
Q ss_pred HHHHHHhhhhhhH-HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHhhcCCCCCcccHHHHH
Q 008077 488 AMLQKLEKEIDDV-DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDK-----EGIQELIANLSKDREGKILVEDIV 561 (578)
Q Consensus 488 ~Mi~~lek~ide~-d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~e-----eeI~eLi~~lD~D~DG~I~~dEFv 561 (578)
.++.+.-+.++++ ..++...|+.+|+...|..+++++..+++.+|....+ .++..|+...|.+..|.++|.+|.
T Consensus 732 ~il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ 811 (890)
T KOG0035|consen 732 EILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFE 811 (890)
T ss_pred HHHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHH
Confidence 3444444444444 4588999999999999999999999999999988774 244556677777778999999999
Q ss_pred HHHhcc
Q 008077 562 KLASQT 567 (578)
Q Consensus 562 ~lv~~~ 567 (578)
..+.+-
T Consensus 812 ddl~R~ 817 (890)
T KOG0035|consen 812 DDLERE 817 (890)
T ss_pred hHhhhh
Confidence 887654
No 81
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=79.85 E-value=2.6 Score=46.70 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=47.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH----hhcCCCCCcccHHHHHHHHhccCC
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIA----NLSKDREGKILVEDIVKLASQTED 569 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~----~lD~D~DG~I~~dEFv~lv~~~~~ 569 (578)
-.|--+|+|++|.|+.++|...- .+.++.-=|+.+++ ..-.-.+|.|+|++|+.++-...+
T Consensus 282 ~kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 282 CKFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred HHHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 34667899999999999998653 23466667888888 344568899999999998876654
No 82
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=79.74 E-value=2 Score=44.54 Aligned_cols=93 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred hhHHhHhHHHHHHHhhhhHhhhhHHHHHHHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 008077 21 RLGVKLRHWKDEFKSTMQHYWLGTKLLWADI---RISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFM 97 (578)
Q Consensus 21 ~~~~k~~~~~~~~k~~~~hY~~G~KlL~~~~---Kis~rL~~k~~~G~~LTRrE~~~L~Rt~~Dl~RLvPF~vfiiVPF~ 97 (578)
.+..|+.++.+.++++++.+|.-+|..+.=. +....|.++-. ..|.|-=.-.++=.+-=++=+|||+-|++.|++
T Consensus 3 ~~~~~~~~~~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~--~~l~~~~~D~~kliP~~i~~~iPf~~~llp~~~ 80 (268)
T PF07766_consen 3 KLWPKAKKEYKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRER--KQLRRTRRDLLKLIPFLIFLIIPFAEYLLPLLV 80 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556666766778888888887777655332 22223333321 223322223333346668889999987665444
Q ss_pred hhHHHHHHHHcCCC--cchhhccc
Q 008077 98 EFLLPVFLKLFPNM--LPSTFQDK 119 (578)
Q Consensus 98 E~lLPv~lklFPnm--LPSTf~~~ 119 (578)
++.| -++|.- -|+.-...
T Consensus 81 -~~fP---~lLPstF~~~~q~~~~ 100 (268)
T PF07766_consen 81 -KYFP---NLLPSTFWSPSQREEF 100 (268)
T ss_dssp ------------------------
T ss_pred -HHhh---hcChHHHcccchHHHH
Confidence 5677 466875 47776654
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=78.78 E-value=11 Score=41.95 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCC--------------------------------HH-----------
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLD--------------------------------KE----------- 538 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~--------------------------------ee----------- 538 (578)
++.+.|+.+|.+..|+|+...-..+|..+ |..+| ++
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 67789999999999999999988887654 32111 00
Q ss_pred ---HHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 539 ---GIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 539 ---eI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
.++.++..+|.|+.|.|+++||..+...
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l 575 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKL 575 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHH
Confidence 1334666789999999999999876554
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=76.96 E-value=6.8 Score=30.86 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
++.+..++..+--++++ .-+...|+..|++++|.+..+|+....+.+
T Consensus 4 f~Evk~lLk~~NI~~~~--~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 4 FKEVKKLLKMMNIEMDD--EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHTT----H--HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCH--HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 45555565555444433 235578999999999999999999887754
No 85
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=76.14 E-value=6.7 Score=33.81 Aligned_cols=48 Identities=25% Similarity=0.325 Sum_probs=34.5
Q ss_pred HHHHHHHHHH---HhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 008077 483 INRVDAMLQK---LEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLK 532 (578)
Q Consensus 483 ~~rv~~Mi~~---lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG 532 (578)
...+..++.+ +...+. ++++.+.|+.+|.|++|.|+.+|+...+..+.
T Consensus 31 ~~EL~~~l~~~~~lg~k~t--~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 31 KKELKELIQKELTIGSKLQ--DAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 5666667653 112122 23677889999999999999999998887653
No 86
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=75.20 E-value=4 Score=43.80 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.++-.|+.+|.|.||.++..||+.+- + .-.+.-|..+|+.-|...||.|+-+|++-.+..-
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~--l--dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIE--L--DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhh--c--cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 68899999999999999999998763 2 2456779999999999999999999998877543
No 87
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=74.16 E-value=5.6 Score=40.93 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=50.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
.++.=..+|.|+||.+|.+||..++.-+...+.-.++..++.--|.|+|.+++.+++++-
T Consensus 283 kkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 283 KKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 333334789999999999999999766677777888999999999999999999998764
No 88
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=73.30 E-value=12 Score=36.69 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCC---------------------------------------------------
Q 008077 505 GDRWRLLDRDYDGKVTAEEVASAAMYLKD--------------------------------------------------- 533 (578)
Q Consensus 505 ~~aF~lfDkdgdG~Is~~EL~~aL~~LG~--------------------------------------------------- 533 (578)
+.-..-||+|+||.|++-|--..++++|.
T Consensus 10 QqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~ 89 (174)
T PF05042_consen 10 QQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDT 89 (174)
T ss_pred hhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccccc
Confidence 34445689999999999999888888884
Q ss_pred --CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 534 --TLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 534 --~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+..+..++|+++++..+.+.+++.|+..|+..-
T Consensus 90 eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 2334566777777777666778888888777654
No 89
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=72.66 E-value=5 Score=34.78 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
++...++.+|.|++|.|+.+|+..++..+
T Consensus 54 ~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 54 LVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56788899999999999999999998776
No 90
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=72.36 E-value=4.1 Score=43.48 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
-|+-+|+.|+.+-||.+...+|--++... ..+.+=.+--++..++...||+|.+.+|-+++..
T Consensus 297 iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 297 IIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 46678999999999999999999888764 2244455777888899999999999999887653
No 91
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=71.57 E-value=10 Score=32.43 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 502 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 502 ~el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.++...|+.+|.|++|.|+.+++..++..+
T Consensus 51 ~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 51 KAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 367789999999999999999999888765
No 92
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=69.78 E-value=5.2 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHhccC
Q 008077 540 IQELIANLSKDREGKILVEDIVKLASQTE 568 (578)
Q Consensus 540 I~eLi~~lD~D~DG~I~~dEFv~lv~~~~ 568 (578)
+..++..+|.|++|.|++++|..++....
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 56778889999999999999999887653
No 93
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=69.59 E-value=3.1 Score=34.73 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCC-------CCcccHHHHHH
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDR-------EGKILVEDIVK 562 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~-------DG~I~~dEFv~ 562 (578)
.+.++|+.+ .++.++||..||++.| +.++++-++..+..-. -|..+|..|++
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 677999999 8889999999999874 2233455665543322 26788888874
No 94
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=68.93 E-value=6.5 Score=34.00 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.+...|+.+|.|+||.|+.+|+..++..+
T Consensus 53 ~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 53 VLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 56678899999999999999999888765
No 95
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=68.10 E-value=12 Score=32.13 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHH-----HhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 481 ALINRVDAMLQK-----LEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 481 rL~~rv~~Mi~~-----lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.-...+..++.. +....++ .++.+.++.+|+|++|.|+.+++..++..+
T Consensus 27 I~~~eL~~ll~~~~~~~lg~~~~~--~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 27 LKKSELKELINNELSHFLEEIKEQ--EVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred ECHHHHHHHHHHHhHHHhcCCCCH--HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 445666666665 3322222 257788999999999999999998887654
No 96
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=65.72 E-value=21 Score=32.40 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
+.-+|-+++.-|+-..+..+++.+|..+|..++++.+..+++.+. |+ +++|++.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 345667777888889999999999999999999999999999985 44 78888754
No 97
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=65.03 E-value=4.7 Score=34.72 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLK 532 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG 532 (578)
++...|+.+|.+++|.|+.+++..++..++
T Consensus 52 ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 52 AVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 567889999999999999999999887765
No 98
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=64.72 E-value=9.7 Score=40.43 Aligned_cols=61 Identities=11% Similarity=0.281 Sum_probs=46.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHh----c-CCCCCHHHHHH-----------HHHhhcCCCCCcccHHHHHHHHhc
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMY----L-KDTLDKEGIQE-----------LIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~----L-G~~l~eeeI~e-----------Li~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
..|.+.|-|+||+..-.||...+.. + ...-.++++.+ +++.+|+|.|-.|++++|++--..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 5688899999999999999988653 2 22233444443 556789999999999999986544
No 99
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=64.51 E-value=10 Score=29.57 Aligned_cols=29 Identities=38% Similarity=0.586 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.+...|..+|.+++|.|+.+++..++..+
T Consensus 34 ~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 34 VLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56788999999999999999999887654
No 100
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=63.61 E-value=9.8 Score=34.70 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 535 LDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 535 l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
.-..++..++..+|.|+||.|+.+|+..+.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 345678999999999999999999998764
No 101
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=63.22 E-value=36 Score=37.91 Aligned_cols=76 Identities=12% Similarity=0.258 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHH----HHHHHHHhhcCCCCCcccHH
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKE----GIQELIANLSKDREGKILVE 558 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~ee----eI~eLi~~lD~D~DG~I~~d 558 (578)
++.|.+.+.++..+|-+.+ |..+|+...|.|+..++...|-.... .+.+ .++++-++++.+ +-.|+++
T Consensus 305 ~deF~~F~e~Lq~Eil~lE------F~~~~~~~~g~Ise~DFA~~lL~~a~-~n~~~k~~~lkrvk~kf~~~-~~gISl~ 376 (489)
T KOG2643|consen 305 IDEFLKFQENLQEEILELE------FERFDKGDSGAISEVDFAELLLAYAG-VNSKKKHKYLKRVKEKFKDD-GKGISLQ 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHhCcccccccCHHHHHHHHHHHcc-cchHhHHHHHHHHHHhccCC-CCCcCHH
Confidence 7888888888877665544 88999999999999999988755432 2222 245555666655 4459999
Q ss_pred HHHHHHhc
Q 008077 559 DIVKLASQ 566 (578)
Q Consensus 559 EFv~lv~~ 566 (578)
||.....-
T Consensus 377 Ef~~Ff~F 384 (489)
T KOG2643|consen 377 EFKAFFRF 384 (489)
T ss_pred HHHHHHHH
Confidence 99876543
No 102
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=63.09 E-value=12 Score=41.70 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-------cCC-CCC-HHHHHHHHHhhcCCCCC
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMY-------LKD-TLD-KEGIQELIANLSKDREG 553 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~-------LG~-~l~-eeeI~eLi~~lD~D~DG 553 (578)
++.|.-.|-..+..-+. .-+.-.|+++|-+|+|.++..||+..... +|. .++ ++-+-+|++-+.....|
T Consensus 334 ykdFv~FilA~e~k~t~--~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~ 411 (493)
T KOG2562|consen 334 YKDFVDFILAEEDKDTP--ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDEN 411 (493)
T ss_pred HHHHHHHHHHhccCCCc--cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCC
Confidence 66666655444322111 13456799999999999999999887443 332 222 44455566666656678
Q ss_pred cccHHHHHH
Q 008077 554 KILVEDIVK 562 (578)
Q Consensus 554 ~I~~dEFv~ 562 (578)
+|++.||.+
T Consensus 412 kItLqDlk~ 420 (493)
T KOG2562|consen 412 KITLQDLKG 420 (493)
T ss_pred ceeHHHHhh
Confidence 899999865
No 103
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=62.67 E-value=10 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLK 532 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG 532 (578)
.+...|+.+|.|++|.|+.+++..++..+.
T Consensus 53 ~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 53 AVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 577889999999999999999999887653
No 104
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=60.13 E-value=6.9 Score=41.80 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=48.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 504 IGDRWRLLDRDYDGKVTAEEVASAAMYLK-DTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 504 l~~aF~lfDkdgdG~Is~~EL~~aL~~LG-~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
+.-.|..+|+|++|.|...|.+-.=+.+- ..-+..-...+++.-|.|+|.+|+++|++..+...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 44569999999999999988765433331 22334556778889999999999999999987654
No 105
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=56.85 E-value=14 Score=31.87 Aligned_cols=29 Identities=10% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 539 GIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 539 eI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+...+..+|.|++|.|+++++..++...
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 39 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS 39 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc
Confidence 45667788999999999999999988654
No 106
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=55.53 E-value=22 Score=41.82 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 501 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 501 d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
+.-+...|+..|++.+|.++..+...+++.+...+....+..++.+.+..++|++..++|++.-...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 3346677778888888888888888888887777777788888888777777888888877765443
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.82 E-value=25 Score=41.53 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 562 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~ 562 (578)
..|.-+ +-+.|+||.+.-+.++..-| ++.--+-+|..-.|.|+||++|+.||--
T Consensus 20 ~qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSI 73 (1118)
T KOG1029|consen 20 AQFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSI 73 (1118)
T ss_pred HHHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHH
Confidence 456666 45899999999999997766 7777889999999999999999999943
No 108
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=53.36 E-value=44 Score=27.60 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=13.2
Q ss_pred HHHHcCCCcchhhcccHHHHH
Q 008077 104 FLKLFPNMLPSTFQDKMREEE 124 (578)
Q Consensus 104 ~lklFPnmLPSTf~~~~q~~~ 124 (578)
=+.+|||.|-++ .++.++.+
T Consensus 37 K~FfFp~~l~~~-~~~~~k~~ 56 (64)
T PF14899_consen 37 KLFFFPNFLNTK-KTDEEKSD 56 (64)
T ss_pred HHHHCcchhccC-CCchHHHH
Confidence 345799999888 55544433
No 109
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=51.44 E-value=21 Score=29.98 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
++...|..+|.+++|.|+.+++..++..+
T Consensus 52 ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 52 AVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 56678889999999999999999988765
No 110
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=49.73 E-value=59 Score=30.99 Aligned_cols=62 Identities=8% Similarity=0.164 Sum_probs=47.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLK---DTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG---~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
..|..|-+.+...++...+..+++..| ..++...+.-++..+...+...|+|++|...+..+
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 455555656667899999999999754 46899999999999876666779999999888765
No 111
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=48.62 E-value=33 Score=36.89 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L-G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
.+...|.+||.+++|.++..+.-..+..+ |...+.+-|+--++.++.+.||.+.=.+|--+
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~i 321 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLI 321 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHH
Confidence 56678999999999999998888777665 66677788888889999999999887666443
No 112
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=48.25 E-value=46 Score=29.27 Aligned_cols=29 Identities=28% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.+...|+.+|.|+||.|+.+|+-..+-.+
T Consensus 49 ~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 49 AVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46688999999999999999998876554
No 113
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.93 E-value=1.1e+02 Score=33.06 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCC-CCCcccHHHHHHHHhcc
Q 008077 537 KEGIQELIANLSKD-REGKILVEDIVKLASQT 567 (578)
Q Consensus 537 eeeI~eLi~~lD~D-~DG~I~~dEFv~lv~~~ 567 (578)
+.-|+..+-.++.. .+|.|+++.|++.+..+
T Consensus 312 d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~l 343 (365)
T KOG2391|consen 312 DLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLL 343 (365)
T ss_pred hhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHH
Confidence 33455555555542 68999999999887654
No 114
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=45.70 E-value=24 Score=31.62 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 531 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~L 531 (578)
.++..|.+-|.|++|+++.+|+.-||+-+
T Consensus 44 ~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 44 VLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 68899999999999999999999988654
No 115
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=44.19 E-value=31 Score=39.90 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=34.5
Q ss_pred Hhc-cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 008077 243 AEG-VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 281 (578)
Q Consensus 243 ~EG-V~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~ 281 (578)
+.| +..||+.+|+..|...|+.+.+..++|.+.+.+|++
T Consensus 545 ~~~~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~~~ 584 (584)
T TIGR00578 545 KKGTLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKHFK 584 (584)
T ss_pred HcCChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHHhC
Confidence 345 999999999999999999977778899999999984
No 116
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=43.94 E-value=26 Score=33.68 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCC-HHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 501 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLD-KEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 501 d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~-eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+++.++ |-.||+|.+|.+++-.++..+.+..| +=++.--++-+|.|+|+.|.-++....+..+
T Consensus 73 k~ri~e~---FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l 137 (189)
T KOG0038|consen 73 KRRICEV---FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL 137 (189)
T ss_pred HHHHHHH---hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH
Confidence 3455554 56799999999999999887754333 2234445566899999999999998887654
No 117
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=40.92 E-value=95 Score=28.41 Aligned_cols=52 Identities=8% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 562 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~ 562 (578)
-+|-++.--|+..||.++|..++...|..+....+.-+++.+.- .++++++.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34555555677789999999999999999999999999999952 67888876
No 118
>PF14658 EF-hand_9: EF-hand domain
Probab=40.28 E-value=42 Score=27.88 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYD-GKVTAEEVASAAMY 530 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgd-G~Is~~EL~~aL~~ 530 (578)
.+++...|...-.+ ...|.++.+..+.+|++|. |.|+.+++..+|+.
T Consensus 17 v~~l~~~Lra~~~~-~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 17 VSDLITYLRAVTGR-SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHHcCC-CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 34444444433221 2234478888899999999 99999999999874
No 119
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=39.66 E-value=33 Score=34.60 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhccCC
Q 008077 539 GIQELIANLSKDREGKILVEDIVKLASQTED 569 (578)
Q Consensus 539 eI~eLi~~lD~D~DG~I~~dEFv~lv~~~~~ 569 (578)
....++..+|.|.||+|++.|+..+|..++.
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga 130 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGA 130 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCC
Confidence 3566889999999999999999999987754
No 120
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=23 Score=38.54 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHh-hcCCCCCcccHHHHHHHH
Q 008077 501 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIAN-LSKDREGKILVEDIVKLA 564 (578)
Q Consensus 501 d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~-lD~D~DG~I~~dEFv~lv 564 (578)
.+.+++.|+.+|+.++|+|+..=++.+|..+...+++.....++.. +|...-|.|-.++|+.-+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 3468899999999999999999999999988756666666666554 666667777777776443
No 121
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.54 E-value=3.5e+02 Score=25.38 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=14.8
Q ss_pred cCCCCHHHHHHHHHhc
Q 008077 246 VESLSEAELRQACRDR 261 (578)
Q Consensus 246 V~sLs~~EL~~AC~~R 261 (578)
|++||..||+.|..+|
T Consensus 115 v~~Mt~REL~~avke~ 130 (130)
T PF11300_consen 115 VERMTVRELQQAVKER 130 (130)
T ss_pred hccccHHHHHHHHhcC
Confidence 8999999999999876
No 122
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=37.10 E-value=41 Score=37.06 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 008077 532 KDTLDKEGIQELIANLSKDREGKILVEDIV 561 (578)
Q Consensus 532 G~~l~eeeI~eLi~~lD~D~DG~I~~dEFv 561 (578)
|+..-...+..++.-+|.|+||.|+.+||+
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 566777889999999999999999999997
No 123
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=37.07 E-value=68 Score=36.39 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=39.0
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 511 LDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 511 fDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
-|...||-|+.+|++. +..+-+ .++..-...+.-+|..++|.|++++|..++...
T Consensus 83 aD~tKDglisf~eF~a-fe~~lC-~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRA-FESVLC-APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hhhcccccccHHHHHH-HHhhcc-CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3677788888888874 444433 345555666777888888888888888887654
No 124
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=36.53 E-value=65 Score=24.63 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=24.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCC-C---CHHHHHHHHHH
Q 008077 246 VESLSEAELRQACRDRGLLGL-L---SVEEMRQQLRD 278 (578)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~-~---s~e~Lr~~L~~ 278 (578)
++.||..||+.-|.+-|++.+ + +..-+.+.|..
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 678999999999999999743 3 34444555543
No 125
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=34.79 E-value=47 Score=28.72 Aligned_cols=52 Identities=27% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 515 YDGKVTAEEVASAAMYLK--DTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 515 gdG~Is~~EL~~aL~~LG--~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
.||.|+..|...+-..+. ..+++++...++..+....+...++.+|++.+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367777777665543321 2466677777776665555555667777666543
No 126
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=34.38 E-value=1.3e+02 Score=27.46 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 508 WRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 508 F~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
+-+|+.-|. .||.+.|..++...|..+.+..+..++..++- +|+++.+.-.
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~ 57 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNA 57 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHh
Confidence 334444333 89999999999999999999999999999962 6899998643
No 127
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=34.32 E-value=87 Score=23.75 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 521 AEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 521 ~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
.+|+..+|..+| ++..++...+..+.. ...++.++.++..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 468889999999 788899999998864 3457788888754
No 128
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=33.75 E-value=1.4e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=44.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 564 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv 564 (578)
-+|-++.-.|+..||.+++..+++..|..+....+.-+++.+.- .++++++.-.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 34555556677899999999999999999999999999999852 6788887643
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.31 E-value=22 Score=42.94 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHhcc
Q 008077 503 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 567 (578)
Q Consensus 503 el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~~ 567 (578)
.+.+.|...|.+.+|.|+..+....++. ..++...+..+..-.|.+++|.+++++|+-.+..+
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3446889999999999999999999977 45888899999999999999999999997665544
No 130
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=30.22 E-value=46 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.8
Q ss_pred cCCCCCcccHHHHHHH
Q 008077 548 SKDREGKILVEDIVKL 563 (578)
Q Consensus 548 D~D~DG~I~~dEFv~l 563 (578)
|.|+||.|+--||.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677888877777644
No 131
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=30.04 E-value=60 Score=24.29 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHhcCCCCC--CCHHHHHHHH
Q 008077 247 ESLSEAELRQACRDRGLLGL--LSVEEMRQQL 276 (578)
Q Consensus 247 ~sLs~~EL~~AC~~RGi~~~--~s~e~Lr~~L 276 (578)
.++|..||+..|.+.||.+. +..++|...+
T Consensus 3 ~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~I 34 (43)
T PF07498_consen 3 KSMTLSELREIAKELGIEGYSKMRKQELIFAI 34 (43)
T ss_dssp HCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence 47899999999999999753 6777776554
No 132
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=28.17 E-value=66 Score=34.92 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 499 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKD---TLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 499 e~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~---~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
.+-.++.+.|..+-.++.+......+..+-..+.. ++=.+++--|+.++|.|.||.++..|+..+
T Consensus 208 ~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I 275 (434)
T KOG3555|consen 208 RLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAI 275 (434)
T ss_pred HHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhh
Confidence 33347888999998888888888777776544433 244688999999999999999998887654
No 133
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=27.69 E-value=1.2e+02 Score=34.52 Aligned_cols=72 Identities=10% Similarity=0.188 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCC-cccHHHH
Q 008077 483 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREG-KILVEDI 560 (578)
Q Consensus 483 ~~rv~~Mi~~lek~ide~d~el~~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG-~I~~dEF 560 (578)
+..|.++++.+..+ ....+|+.-|+.++|.||.=+++.+|-.+..++....|+..+...--..+| ++++..|
T Consensus 166 y~~f~Q~lh~~~~E------~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 166 YAEFTQFLHEFQLE------HAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHH
Confidence 67777777765321 345789999999999999999999998886666666676655544322222 3444444
No 134
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=26.69 E-value=2.4e+02 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 008077 518 KVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 563 (578)
Q Consensus 518 ~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~l 563 (578)
.||.++|..++...|..+.+..+..+++.+. .+|+++.+.-
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHh
Confidence 8999999999999999999999999999985 2788998853
No 135
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=26.37 E-value=4.2e+02 Score=22.81 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHh-hhCCCCCCccHHHHHHHHHHHHHHHh
Q 008077 176 GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQEIKN 236 (578)
Q Consensus 176 G~~ps~eeil~~aklF~d~l~LdnLsr~qL~alcr-~~~l~~fg~~~~LR~rLr~rl~~L~~ 236 (578)
..+++.+++.+.. ++|+.+|..+++ +.|++|. ..+.+.|+.+=...|..
T Consensus 19 ~~~~~~~~lA~~~----------~~S~~~l~r~f~~~~g~s~~--~~i~~~Rl~~a~~~L~~ 68 (107)
T PRK10219 19 DQPLNIDVVAKKS----------GYSKWYLQRMFRTVTHQTLG--DYIRQRRLLLAAVELRT 68 (107)
T ss_pred CCCCCHHHHHHHH----------CCCHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHHHHHc
Confidence 4557888886544 689999987776 5687773 22333444443444443
No 136
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=26.26 E-value=2.5e+02 Score=25.25 Aligned_cols=42 Identities=7% Similarity=0.234 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 008077 519 VTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 565 (578)
Q Consensus 519 Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~ 565 (578)
||.+++..++...|..++++.+..+++.+. .+++++++.-..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 999999999999999999999999999984 267899886543
No 137
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=25.14 E-value=5.1e+02 Score=23.38 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHh-hhCCCCCCccHHHHHHHHHHHHHHHhhcHhHHHhccCCCCHHHH
Q 008077 176 GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAEL 254 (578)
Q Consensus 176 G~~ps~eeil~~aklF~d~l~LdnLsr~qL~alcr-~~~l~~fg~~~~LR~rLr~rl~~L~~DD~lI~~EGV~sLs~~EL 254 (578)
..+++.+++.+.. ++|+.+|..+++ .+|++|. ..+.+.|+..-...|..- +++..|+
T Consensus 23 ~~~~sl~~lA~~~----------g~S~~~l~r~Fk~~~G~s~~--~~l~~~Rl~~A~~~L~~t----------~~~i~eI 80 (127)
T PRK11511 23 ESPLSLEKVSERS----------GYSKWHLQRMFKKETGHSLG--QYIRSRKMTEIAQKLKES----------NEPILYL 80 (127)
T ss_pred CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHHHHHcC----------CCCHHHH
Confidence 3567888776543 689999998887 6688873 223344554433333322 2455555
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcc
Q 008077 255 RQACRDRGLLGLLSVEEMRQQLRDWLDLS 283 (578)
Q Consensus 255 ~~AC~~RGi~~~~s~e~Lr~~L~~WL~Ls 283 (578)
...| |. .+...+....+.|..++
T Consensus 81 A~~~---Gf---~s~s~F~r~Fkk~~G~t 103 (127)
T PRK11511 81 AERY---GF---ESQQTLTRTFKNYFDVP 103 (127)
T ss_pred HHHh---CC---CCHHHHHHHHHHHHCcC
Confidence 5554 44 45566667777777654
No 138
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.44 E-value=1.4e+02 Score=24.81 Aligned_cols=32 Identities=6% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 008077 516 DGKVTAEEVASAAMYLKDTLDKEGIQELIANL 547 (578)
Q Consensus 516 dG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~l 547 (578)
+-.|+.+-++..++.+|.++++.+|++++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55799999999999999999999999998765
No 139
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=23.94 E-value=1.2e+02 Score=28.09 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhcHhHHHhccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCCCh
Q 008077 223 LRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPS 290 (578)
Q Consensus 223 LR~rLr~rl~~L~~DD~lI~~EGV~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Ls~~~~vp~ 290 (578)
+-.||..-+..-.=|+.++....-+.|+..|...+-.+|=+....+...+.....+||++..-..++.
T Consensus 6 lAsrLSYfLw~s~PD~~L~~aA~~g~L~~~~~l~~q~~RML~dpr~~~~~~~F~~qWL~l~~~~~~~~ 73 (128)
T PF07631_consen 6 LASRLSYFLWGSPPDAELLDAAAAGELRTPEQLRAQAERMLADPRARRFVERFFRQWLDLDRLDSIVK 73 (128)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHcCccHHHHHHHHHHHHhCCCcccccCC
Confidence 34455555555566777776655557777777777777777666778889999999999986555543
No 140
>PRK00523 hypothetical protein; Provisional
Probab=23.83 E-value=1.4e+02 Score=25.33 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 008077 516 DGKVTAEEVASAAMYLKDTLDKEGIQELIANL 547 (578)
Q Consensus 516 dG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~l 547 (578)
+-.|+.+-++..+..+|.++++.+|++++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56899999999999999999999999998876
No 141
>PRK12768 CysZ-like protein; Reviewed
Probab=22.80 E-value=1.3e+02 Score=30.89 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhhhhh--hhhHHHHHhhhhhhhHHHHHHH
Q 008077 68 SRRERQQLTRTTADIFR--LVPVAVFIIVPFMEFLLPVFLK 106 (578)
Q Consensus 68 TRrE~~~L~Rt~~Dl~R--LvPF~vfiiVPF~E~lLPv~lk 106 (578)
+++|.+.+.+..+=... =++.+++..||+.+++.|++.-
T Consensus 177 ~~~e~r~~l~~~r~~~~~fG~~~all~~IP~vNL~~Pv~aa 217 (240)
T PRK12768 177 SEAEAKAFRRKHATTVFLAGLVIAAFVAIPIVNLLTPLFAA 217 (240)
T ss_pred CHHHHHHHHHhcccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999887766553333 2677788899999999998763
No 142
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.96 E-value=91 Score=34.48 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=44.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 008077 506 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIV 561 (578)
Q Consensus 506 ~aF~lfDkdgdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD~D~DG~I~~dEFv 561 (578)
+.|-.+-+ -+|+||...-+.-| ++.++++.-+-.+.+-.|.|+||.++-+||.
T Consensus 448 e~fy~l~p-~~gk~sg~~ak~~m--v~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 448 EIFYTLSP-VNGKLSGRNAKKEM--VKSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hhhhcccc-cCceeccchhHHHH--HhccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 56666644 68999999888776 4567999999999999999999999999995
No 143
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=21.79 E-value=1.6e+02 Score=24.66 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 008077 246 VESLSEAELRQACRDRGLLGLLSVEEMRQQLR 277 (578)
Q Consensus 246 V~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~ 277 (578)
+-+||..++...+..|||....+.+++.+.|.
T Consensus 43 lag~s~~eF~~~L~~~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 43 LAGMSRWEFLELLKERGIPINYDEEELEEDLE 74 (76)
T ss_pred HhCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 56789999999999999996688888887765
No 144
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=21.74 E-value=5.5e+02 Score=22.53 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHH-------HhcCCC----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 008077 502 AKIGDRWRLLDRDYDGKVTAEEVASAA-------MYLKDT----LDKEGIQELIANLSKDREGKILVEDIVKLASQ 566 (578)
Q Consensus 502 ~el~~aF~lfDkdgdG~Is~~EL~~aL-------~~LG~~----l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~~ 566 (578)
++++-.|+.+ .|++|.++..-|...| +.+|+. ..+.-++..+... ...-.|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 3777889988 7889999986665554 445543 2455666777664 24457999999998764
No 145
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=21.21 E-value=71 Score=29.45 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 008077 534 TLDKEGIQELIANLSKDREGKILVEDIVKLAS 565 (578)
Q Consensus 534 ~l~eeeI~eLi~~lD~D~DG~I~~dEFv~lv~ 565 (578)
.+++++.+.+..++-.|..|.+.|-||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 47899999999999999999999999998654
No 146
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.93 E-value=1.6e+02 Score=24.83 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008077 515 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 548 (578)
Q Consensus 515 gdG~Is~~EL~~aL~~LG~~l~eeeI~eLi~~lD 548 (578)
.+-.|+.+-++..+..+|.++++.+|++++....
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3568999999999999999999999999988753
No 147
>PRK15340 transcriptional regulator InvF; Provisional
Probab=20.44 E-value=3.4e+02 Score=27.56 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHh-hhCCCCCCccHHHHHHHHHHHH
Q 008077 176 GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQ 232 (578)
Q Consensus 176 G~~ps~eeil~~aklF~d~l~LdnLsr~qL~alcr-~~~l~~fg~~~~LR~rLr~rl~ 232 (578)
....+.+++.+.. ++|+.|+..+|+ ++|.+|. ..+.++|+...+.
T Consensus 123 ~~~~sleeLA~~~----------gvS~r~f~RlFk~~~G~tpk--~yl~~~Rl~~all 168 (216)
T PRK15340 123 TSGNTMRMLGEDY----------GVSYTHFRRLCSRALGGKAK--SELRNWRMAQSLL 168 (216)
T ss_pred cCCCCHHHHHHHH----------CcCHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHH
Confidence 3456777665433 689999999997 7888873 2344455544443
Done!