Query 008080
Match_columns 578
No_of_seqs 168 out of 315
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 5.1E-41 1.8E-45 290.4 -0.1 90 142-231 3-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 9E-40 3.1E-44 279.8 -0.2 83 146-228 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.7E-30 5.7E-35 209.0 1.5 59 146-204 2-60 (60)
4 1uad_C RSEC5, exocyst complex 39.7 21 0.00071 30.3 3.3 27 547-575 7-33 (99)
5 3fau_A NEDD4-binding protein 2 27.0 24 0.00081 28.6 1.5 31 450-481 51-81 (82)
6 1pby_A Quinohemoprotein amine 23.6 56 0.0019 35.7 4.0 31 545-575 273-303 (489)
7 1jmx_A Amine dehydrogenase; ox 23.4 55 0.0019 35.8 3.9 29 547-575 283-311 (494)
8 2lau_A THAP domain-containing 19.4 41 0.0014 27.0 1.5 12 146-157 3-14 (81)
9 1vk6_A NADH pyrophosphatase; 1 18.4 22 0.00076 35.0 -0.4 36 162-198 100-135 (269)
10 4a6q_A Histone deacetylase com 17.5 27 0.00091 32.5 -0.1 28 166-204 20-47 (143)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=5.1e-41 Score=290.43 Aligned_cols=90 Identities=63% Similarity=1.075 Sum_probs=80.4
Q ss_pred CCCCCCCceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhhcCcccccccCccchHHHHHhhHhhhh
Q 008080 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR 221 (578)
Q Consensus 142 ~~~~~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RR 221 (578)
+++++.++|||+||.+||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCC
Q 008080 222 RKTNPDAVAN 231 (578)
Q Consensus 222 Rk~~~~~~~~ 231 (578)
||+++++...
T Consensus 83 Rk~~~~~~~~ 92 (94)
T 1ul4_A 83 RKSSGESGPS 92 (94)
T ss_dssp CSCCCC----
T ss_pred ccCCCCcCCC
Confidence 9999987643
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=9e-40 Score=279.85 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.4
Q ss_pred CCCceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhhcCcccccccCccchHHHHHhhHhhhhccCC
Q 008080 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (578)
Q Consensus 146 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~~ 225 (578)
+.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 008080 226 PDA 228 (578)
Q Consensus 226 ~~~ 228 (578)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=1.7e-30 Score=208.96 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.1
Q ss_pred CCCceeeCCCcccccccchhhhccchhhhhcccceeeeCCchhhhhhhhhcCccccccc
Q 008080 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (578)
Q Consensus 146 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD 204 (578)
+.++|||+||++||+.+|.|||||||||.|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=39.74 E-value=21 Score=30.34 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CceeEEeeeeeeeCCCceEEEEEeeccCC
Q 008080 547 YSKILSVKPIAVPASERAQFFVKGINLGY 575 (578)
Q Consensus 547 ~p~i~~V~PiAv~ag~~~~f~vkG~NL~~ 575 (578)
.|+|..|+|..-+.| |.+.++|.||..
T Consensus 7 ~P~It~i~P~~Gp~G--T~vTI~G~nlg~ 33 (99)
T 1uad_C 7 PPLVTGISPNEGIPW--TKVTIRGENLGT 33 (99)
T ss_dssp CCEEEEEESSEESTT--CEEEEEEECSCS
T ss_pred CCEEEEEECCCcCCC--CEEEEEEEeCCC
Confidence 579999999998665 999999999964
No 5
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=26.97 E-value=24 Score=28.61 Aligned_cols=31 Identities=16% Similarity=0.520 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHhccCCCCCcccccCCceeeeh
Q 008080 450 PLVLRAQILDWLSHSPSDMESYIRPGCVILTI 481 (578)
Q Consensus 450 P~~LR~QIl~WLs~~PtdmEsYIRPGCvILTI 481 (578)
+..||..|.+||...|-..+. .-|||+++.+
T Consensus 51 ~~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~l 81 (82)
T 3fau_A 51 VARIKPAVIKYLISHSFRFSE-IKPGCLKVML 81 (82)
T ss_dssp --CHHHHHHHHHHHTTCCEEE-EETTEEEEEC
T ss_pred cchHHHHHHHHHHhCCCceee-CCCEEEEEEe
Confidence 456999999999998866543 5899988764
No 6
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=23.57 E-value=56 Score=35.66 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=28.4
Q ss_pred CCCceeEEeeeeeeeCCCceEEEEEeeccCC
Q 008080 545 NNYSKILSVKPIAVPASERAQFFVKGINLGY 575 (578)
Q Consensus 545 ~~~p~i~~V~PiAv~ag~~~~f~vkG~NL~~ 575 (578)
.-.|+|+.|.|-++.+|+++++.|-|.+|..
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g 303 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGS 303 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred CCCceEEEeChhhhcCCCceEEEEEeccccc
Confidence 4467999999999999999999999999985
No 7
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=23.41 E-value=55 Score=35.79 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=27.7
Q ss_pred CceeEEeeeeeeeCCCceEEEEEeeccCC
Q 008080 547 YSKILSVKPIAVPASERAQFFVKGINLGY 575 (578)
Q Consensus 547 ~p~i~~V~PiAv~ag~~~~f~vkG~NL~~ 575 (578)
.|+|+.|.|-++.+|.++++.|-|.+|..
T Consensus 283 ~~~~~av~p~~~~ag~~~~~~i~G~gl~g 311 (494)
T 1jmx_A 283 KARLLAVQPAFIKAGGESEITLVGSGLAG 311 (494)
T ss_dssp SCEEEEEESSEEETTCEEEEEEEEESCCS
T ss_pred CceEEEEChhhhcCCCceEEEEEeccccc
Confidence 77999999999999999999999999985
No 8
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=19.41 E-value=41 Score=26.97 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=8.8
Q ss_pred CCCceeeCCCcc
Q 008080 146 SRAVCQVEDCGA 157 (578)
Q Consensus 146 ~~~~CqV~GC~~ 157 (578)
....|-|.||..
T Consensus 3 pG~~C~v~gC~n 14 (81)
T 2lau_A 3 PGFTCCVPGCYN 14 (81)
T ss_dssp SCCSCCCSSSSS
T ss_pred CCCEEEeCCCcC
Confidence 345788999974
No 9
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=18.45 E-value=22 Score=35.04 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.5
Q ss_pred cchhhhccchhhhhcccceeeeCCchhhhhhhhhcCc
Q 008080 162 AKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFH 198 (578)
Q Consensus 162 ~k~Y~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH 198 (578)
+..++++++-|..+-... ...++...+.|..|+..|
T Consensus 100 l~~w~~~~~fC~~CG~~~-~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCGHEM-YPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHHTTSBCTTTCCBE-EECSSSSCEEESSSSCEE
T ss_pred HHhhhhcCCccccCCCcC-ccCCCceeeeCCCCCCEe
Confidence 456788899998876544 445677788999998654
No 10
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=17.48 E-value=27 Score=32.50 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=22.6
Q ss_pred hhccchhhhhcccceeeeCCchhhhhhhhhcCccccccc
Q 008080 166 HRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (578)
Q Consensus 166 ~rR~rVCe~H~kA~~v~v~G~~qRFCQQC~rFH~L~eFD 204 (578)
--|.++|+++.+ -||++=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 458899999765 3776667999999996
Done!