Query 008081
Match_columns 578
No_of_seqs 341 out of 1711
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 4.7E-15 1E-19 138.9 11.8 82 345-427 31-116 (144)
2 KOG0144 RNA-binding protein CU 99.6 3.8E-16 8.2E-21 164.9 5.0 153 272-433 54-214 (510)
3 KOG0153 Predicted RNA-binding 99.6 6E-15 1.3E-19 152.7 10.7 76 346-424 226-302 (377)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 7.7E-14 1.7E-18 145.3 11.1 80 347-427 268-351 (352)
5 KOG0149 Predicted RNA-binding 99.5 3E-14 6.5E-19 141.3 6.9 75 347-423 11-89 (247)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.5E-13 7.6E-18 140.4 10.9 79 348-427 3-85 (352)
7 TIGR01659 sex-lethal sex-letha 99.4 2.7E-13 5.9E-18 143.7 9.5 82 347-429 192-279 (346)
8 PF00076 RRM_1: RNA recognitio 99.4 4.1E-13 8.8E-18 107.0 8.2 67 351-418 1-70 (70)
9 TIGR01645 half-pint poly-U bin 99.4 3.9E-13 8.5E-18 150.8 10.0 79 347-426 203-285 (612)
10 TIGR01628 PABP-1234 polyadenyl 99.4 4E-13 8.7E-18 149.6 9.2 84 346-430 283-369 (562)
11 KOG0148 Apoptosis-promoting RN 99.4 4.2E-13 9.1E-18 135.4 8.2 150 272-429 82-242 (321)
12 TIGR01659 sex-lethal sex-letha 99.4 1E-12 2.2E-17 139.3 10.5 82 344-426 103-188 (346)
13 KOG0125 Ataxin 2-binding prote 99.4 7.1E-13 1.5E-17 136.6 8.9 79 346-425 94-174 (376)
14 PLN03120 nucleic acid binding 99.4 1.3E-12 2.8E-17 132.7 10.5 75 348-424 4-79 (260)
15 KOG0111 Cyclophilin-type pepti 99.4 3.5E-13 7.6E-18 132.7 3.6 80 346-426 8-91 (298)
16 TIGR01622 SF-CC1 splicing fact 99.3 7.3E-12 1.6E-16 135.4 11.2 78 346-424 184-265 (457)
17 KOG0113 U1 small nuclear ribon 99.3 7.9E-12 1.7E-16 127.7 10.7 87 337-424 90-180 (335)
18 TIGR01628 PABP-1234 polyadenyl 99.3 5.7E-12 1.2E-16 140.4 10.6 83 345-428 175-264 (562)
19 PLN03213 repressor of silencin 99.3 6.5E-12 1.4E-16 134.8 9.4 79 346-425 8-88 (759)
20 PF14259 RRM_6: RNA recognitio 99.3 2.2E-11 4.7E-16 98.5 8.3 67 351-418 1-70 (70)
21 KOG0107 Alternative splicing f 99.3 1.4E-11 3E-16 118.0 8.1 80 346-427 8-87 (195)
22 smart00362 RRM_2 RNA recogniti 99.3 4.4E-11 9.5E-16 93.4 9.6 70 350-420 1-72 (72)
23 TIGR01645 half-pint poly-U bin 99.3 1.8E-11 4E-16 137.5 10.4 78 346-424 105-186 (612)
24 PLN03121 nucleic acid binding 99.2 3.2E-11 6.9E-16 121.3 10.6 77 346-424 3-80 (243)
25 KOG0148 Apoptosis-promoting RN 99.2 2.9E-11 6.4E-16 122.3 8.0 83 347-430 61-147 (321)
26 KOG4205 RNA-binding protein mu 99.2 1.7E-11 3.7E-16 128.0 6.0 153 272-431 26-182 (311)
27 COG0724 RNA-binding proteins ( 99.2 8.2E-11 1.8E-15 112.8 10.1 76 348-424 115-194 (306)
28 KOG0122 Translation initiation 99.2 5.8E-11 1.3E-15 118.7 9.0 78 347-425 188-269 (270)
29 smart00360 RRM RNA recognition 99.2 1.3E-10 2.7E-15 90.3 8.5 67 353-420 1-71 (71)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.4E-10 3.1E-15 127.0 12.1 79 346-425 293-375 (509)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.4E-10 3E-15 127.7 11.2 80 345-426 272-352 (481)
32 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.3E-15 129.8 11.3 78 346-428 231-310 (578)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.5E-10 3.3E-15 127.4 10.8 76 347-425 1-78 (481)
34 KOG4207 Predicted splicing fac 99.1 5.4E-11 1.2E-15 116.6 6.3 77 347-424 12-92 (256)
35 TIGR01648 hnRNP-R-Q heterogene 99.1 1.7E-10 3.6E-15 129.4 10.1 78 346-424 56-137 (578)
36 TIGR01622 SF-CC1 splicing fact 99.1 2.9E-10 6.2E-15 123.1 11.7 78 346-425 87-168 (457)
37 cd00590 RRM RRM (RNA recogniti 99.1 5.6E-10 1.2E-14 87.6 9.7 71 350-421 1-74 (74)
38 PF13893 RRM_5: RNA recognitio 99.1 4E-10 8.6E-15 88.2 8.1 56 366-422 1-56 (56)
39 KOG0131 Splicing factor 3b, su 99.1 1.4E-10 3.1E-15 111.8 6.5 77 346-423 7-87 (203)
40 KOG0117 Heterogeneous nuclear 99.0 6.6E-10 1.4E-14 118.7 7.8 80 344-428 255-334 (506)
41 KOG0126 Predicted RNA-binding 99.0 8E-11 1.7E-15 113.5 -0.1 78 344-422 31-112 (219)
42 KOG4205 RNA-binding protein mu 99.0 3.6E-10 7.8E-15 118.2 4.2 81 347-429 5-89 (311)
43 KOG0108 mRNA cleavage and poly 99.0 1.4E-09 3.1E-14 118.2 9.0 82 345-427 14-100 (435)
44 smart00361 RRM_1 RNA recogniti 99.0 2.3E-09 5E-14 88.1 7.9 57 363-419 2-69 (70)
45 KOG0114 Predicted RNA-binding 98.9 4.6E-09 1E-13 93.5 8.6 79 346-425 16-95 (124)
46 KOG0127 Nucleolar protein fibr 98.9 2.9E-09 6.2E-14 116.1 8.6 82 348-430 117-201 (678)
47 KOG0117 Heterogeneous nuclear 98.9 4.7E-09 1E-13 112.3 9.9 78 345-423 80-162 (506)
48 KOG0147 Transcriptional coacti 98.9 1.5E-09 3.2E-14 118.4 5.9 154 270-429 197-362 (549)
49 KOG0124 Polypyrimidine tract-b 98.9 9.7E-10 2.1E-14 114.9 4.1 162 348-512 113-285 (544)
50 KOG0109 RNA-binding protein LA 98.8 3.2E-09 7E-14 108.6 6.1 76 345-425 75-150 (346)
51 KOG0121 Nuclear cap-binding pr 98.8 4.9E-09 1.1E-13 96.4 6.6 76 346-422 34-113 (153)
52 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.4E-08 3E-13 111.5 9.8 75 345-423 172-258 (509)
53 KOG0105 Alternative splicing f 98.8 8.1E-09 1.8E-13 100.0 6.8 80 346-426 4-84 (241)
54 KOG0127 Nucleolar protein fibr 98.8 6.1E-08 1.3E-12 105.9 12.9 79 349-428 293-381 (678)
55 KOG0145 RNA-binding protein EL 98.8 2.4E-08 5.3E-13 100.9 8.9 76 349-425 279-358 (360)
56 KOG0145 RNA-binding protein EL 98.8 2.4E-08 5.2E-13 101.0 8.6 82 346-428 39-124 (360)
57 KOG0132 RNA polymerase II C-te 98.7 1.6E-08 3.5E-13 113.8 7.5 79 348-429 421-499 (894)
58 KOG0109 RNA-binding protein LA 98.7 1.9E-08 4.1E-13 103.0 6.3 76 349-429 3-78 (346)
59 KOG0130 RNA-binding protein RB 98.7 2.1E-08 4.5E-13 93.1 5.6 77 350-427 74-154 (170)
60 KOG0144 RNA-binding protein CU 98.7 2.8E-08 6.1E-13 106.1 7.0 82 346-428 32-120 (510)
61 KOG4206 Spliceosomal protein s 98.7 5.2E-08 1.1E-12 96.8 7.9 85 346-431 7-96 (221)
62 KOG0123 Polyadenylate-binding 98.7 4.2E-08 9E-13 105.3 7.8 77 351-429 79-157 (369)
63 KOG0131 Splicing factor 3b, su 98.6 3.4E-08 7.3E-13 95.6 5.8 83 346-429 94-181 (203)
64 KOG0415 Predicted peptidyl pro 98.6 6.6E-08 1.4E-12 101.2 6.5 82 343-425 234-319 (479)
65 KOG0146 RNA-binding protein ET 98.5 1.4E-07 3E-12 95.8 6.7 92 343-435 14-111 (371)
66 KOG0146 RNA-binding protein ET 98.5 1.3E-07 2.7E-12 96.2 4.9 84 343-427 280-367 (371)
67 KOG0123 Polyadenylate-binding 98.4 3.4E-07 7.3E-12 98.4 6.6 81 346-427 268-351 (369)
68 KOG4208 Nucleolar RNA-binding 98.4 5.4E-07 1.2E-11 88.8 7.0 79 346-425 47-130 (214)
69 KOG4212 RNA-binding protein hn 98.4 1.2E-06 2.5E-11 94.0 8.6 76 346-422 42-121 (608)
70 KOG0124 Polypyrimidine tract-b 98.3 7.7E-07 1.7E-11 93.6 6.8 76 348-424 210-289 (544)
71 KOG0110 RNA-binding protein (R 98.3 1.2E-06 2.6E-11 98.4 8.2 73 350-423 517-596 (725)
72 KOG4661 Hsp27-ERE-TATA-binding 98.2 1.6E-06 3.4E-11 95.3 6.6 76 348-424 405-484 (940)
73 KOG0110 RNA-binding protein (R 98.2 1.2E-06 2.5E-11 98.6 4.6 80 348-428 613-696 (725)
74 KOG0151 Predicted splicing reg 98.2 5.3E-06 1.1E-10 93.3 9.3 79 345-424 171-256 (877)
75 KOG4454 RNA binding protein (R 98.2 7E-07 1.5E-11 88.7 2.0 80 345-425 6-87 (267)
76 KOG0116 RasGAP SH3 binding pro 98.1 5E-06 1.1E-10 90.5 8.2 75 348-424 288-366 (419)
77 KOG0106 Alternative splicing f 98.1 2.9E-06 6.3E-11 84.8 4.1 72 349-425 2-73 (216)
78 KOG2135 Proteins containing th 97.9 2.8E-05 6.2E-10 84.4 8.4 77 347-426 371-447 (526)
79 KOG0533 RRM motif-containing p 97.8 5.2E-05 1.1E-09 77.3 8.2 80 345-425 80-162 (243)
80 KOG4212 RNA-binding protein hn 97.8 3.2E-05 6.9E-10 83.3 6.7 73 346-421 534-607 (608)
81 KOG4209 Splicing factor RNPS1, 97.7 4E-05 8.7E-10 77.7 5.3 78 346-425 99-180 (231)
82 KOG0226 RNA-binding proteins [ 97.6 3.8E-05 8.2E-10 78.1 3.9 78 347-425 189-270 (290)
83 KOG4660 Protein Mei2, essentia 97.6 3.7E-05 8E-10 84.9 4.0 74 343-418 70-143 (549)
84 KOG1457 RNA binding protein (c 97.5 0.00046 1E-08 69.3 8.8 87 346-433 32-126 (284)
85 PF00642 zf-CCCH: Zinc finger 97.4 2.7E-05 5.9E-10 53.3 -0.1 23 192-214 3-26 (27)
86 KOG1190 Polypyrimidine tract-b 97.4 0.00059 1.3E-08 73.4 9.0 77 348-425 297-373 (492)
87 KOG1548 Transcription elongati 97.2 0.00087 1.9E-08 70.8 7.7 76 347-423 133-219 (382)
88 KOG4211 Splicing factor hnRNP- 97.1 0.0019 4.2E-08 70.8 8.7 77 346-425 8-86 (510)
89 smart00356 ZnF_C3H1 zinc finge 97.0 0.00037 8.1E-09 46.7 1.7 22 193-214 5-26 (27)
90 PF04059 RRM_2: RNA recognitio 96.9 0.0043 9.3E-08 55.1 8.2 78 349-427 2-89 (97)
91 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0028 6.1E-08 50.1 5.8 52 349-404 2-53 (53)
92 KOG1855 Predicted RNA-binding 96.7 0.0012 2.6E-08 71.4 3.9 124 284-409 161-308 (484)
93 KOG0147 Transcriptional coacti 96.7 0.00071 1.5E-08 74.9 2.1 74 348-423 179-256 (549)
94 KOG0106 Alternative splicing f 96.6 0.0014 3E-08 65.9 3.0 68 348-420 99-166 (216)
95 KOG4210 Nuclear localization s 96.6 0.0013 2.8E-08 68.8 2.7 81 346-428 182-267 (285)
96 PF08777 RRM_3: RNA binding mo 96.5 0.0032 7E-08 56.5 4.5 56 350-408 3-58 (105)
97 KOG1548 Transcription elongati 96.4 0.024 5.2E-07 60.3 10.5 92 332-425 250-352 (382)
98 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.017 3.6E-07 51.7 8.1 69 350-423 8-90 (100)
99 KOG0120 Splicing factor U2AF, 96.4 0.0051 1.1E-07 68.6 5.8 81 347-428 288-372 (500)
100 KOG4211 Splicing factor hnRNP- 96.3 0.011 2.4E-07 65.2 8.1 75 347-423 102-180 (510)
101 PF11608 Limkain-b1: Limkain b 96.3 0.015 3.3E-07 50.6 7.0 69 349-424 3-76 (90)
102 KOG0120 Splicing factor U2AF, 96.2 0.012 2.6E-07 65.6 7.6 61 364-424 424-491 (500)
103 COG5175 MOT2 Transcriptional r 96.0 0.016 3.5E-07 61.3 6.9 79 347-425 113-203 (480)
104 KOG4206 Spliceosomal protein s 96.0 0.028 6E-07 56.7 8.2 78 344-423 142-220 (221)
105 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0039 8.5E-08 39.5 1.4 19 194-214 1-19 (19)
106 KOG0129 Predicted RNA-binding 95.9 0.03 6.6E-07 62.1 8.7 81 344-426 366-456 (520)
107 KOG0129 Predicted RNA-binding 95.8 0.02 4.4E-07 63.5 7.1 73 346-423 257-339 (520)
108 KOG2185 Predicted RNA-processi 95.7 0.0043 9.3E-08 66.9 1.2 27 191-217 139-165 (486)
109 KOG1995 Conserved Zn-finger pr 95.6 0.015 3.2E-07 62.0 4.9 83 345-428 63-157 (351)
110 smart00517 PolyA C-terminal do 95.4 0.016 3.4E-07 47.9 3.4 51 8-61 11-61 (64)
111 PF00658 PABP: Poly-adenylate 95.4 0.01 2.2E-07 50.1 2.2 50 8-60 22-71 (72)
112 KOG1457 RNA binding protein (c 95.2 0.022 4.7E-07 57.6 4.2 66 346-412 208-273 (284)
113 PF08952 DUF1866: Domain of un 95.1 0.072 1.6E-06 50.7 7.3 78 342-424 21-106 (146)
114 KOG1456 Heterogeneous nuclear 94.8 0.12 2.6E-06 55.7 8.6 79 346-425 285-363 (494)
115 KOG4849 mRNA cleavage factor I 94.6 0.026 5.7E-07 60.0 3.3 74 350-424 82-161 (498)
116 KOG2314 Translation initiation 94.6 0.042 9.2E-07 61.6 4.9 73 349-423 59-142 (698)
117 KOG3152 TBP-binding protein, a 94.5 0.021 4.5E-07 58.6 2.2 69 347-416 73-157 (278)
118 KOG2202 U2 snRNP splicing fact 94.1 0.021 4.7E-07 58.5 1.4 59 364-422 83-145 (260)
119 KOG1677 CCCH-type Zn-finger pr 93.9 0.026 5.7E-07 59.4 1.4 27 188-214 173-200 (332)
120 KOG1190 Polypyrimidine tract-b 93.7 0.15 3.2E-06 55.5 6.7 78 345-423 411-489 (492)
121 KOG4307 RNA binding protein RB 93.6 0.079 1.7E-06 60.7 4.6 80 345-425 431-514 (944)
122 KOG0112 Large RNA-binding prot 93.4 0.16 3.5E-06 59.7 6.7 85 344-431 451-537 (975)
123 KOG1996 mRNA splicing factor [ 93.0 0.23 5E-06 52.1 6.7 62 363-424 300-366 (378)
124 PF10309 DUF2414: Protein of u 90.1 1.3 2.9E-05 36.4 6.9 54 348-407 5-62 (62)
125 KOG2193 IGF-II mRNA-binding pr 90.1 0.27 5.8E-06 53.8 3.6 80 349-431 2-82 (584)
126 KOG4307 RNA binding protein RB 90.1 0.86 1.9E-05 52.7 7.6 72 348-420 867-942 (944)
127 KOG2891 Surface glycoprotein [ 89.8 0.28 6E-06 51.2 3.3 39 345-383 146-195 (445)
128 PF04847 Calcipressin: Calcipr 89.1 1.1 2.4E-05 44.3 6.8 62 362-425 8-71 (184)
129 KOG1039 Predicted E3 ubiquitin 88.3 0.17 3.6E-06 54.5 0.5 22 193-214 9-30 (344)
130 KOG1456 Heterogeneous nuclear 88.1 1.7 3.7E-05 47.2 7.8 77 348-425 120-199 (494)
131 KOG0128 RNA-binding protein SA 87.6 0.07 1.5E-06 62.3 -3.0 72 349-421 668-743 (881)
132 PF15023 DUF4523: Protein of u 87.6 2.1 4.6E-05 41.0 7.3 74 344-422 82-159 (166)
133 KOG4676 Splicing factor, argin 87.4 0.95 2.1E-05 49.3 5.4 74 349-424 8-88 (479)
134 KOG4285 Mitotic phosphoprotein 87.3 1.3 2.7E-05 46.9 6.1 63 362-427 209-272 (350)
135 KOG0112 Large RNA-binding prot 87.0 0.14 3.1E-06 60.1 -1.0 80 345-425 369-451 (975)
136 KOG1595 CCCH-type Zn-finger pr 86.5 0.44 9.5E-06 53.5 2.5 35 180-214 224-258 (528)
137 KOG1365 RNA-binding protein Fu 86.2 1.1 2.5E-05 48.6 5.2 70 350-421 163-239 (508)
138 KOG0128 RNA-binding protein SA 86.0 0.36 7.9E-06 56.6 1.6 76 348-424 736-814 (881)
139 KOG2068 MOT2 transcription fac 85.8 0.31 6.6E-06 51.9 0.8 77 349-425 78-163 (327)
140 KOG2416 Acinus (induces apopto 85.7 0.95 2.1E-05 51.5 4.5 77 344-423 440-520 (718)
141 KOG0105 Alternative splicing f 85.4 3.7 8.1E-05 40.9 8.0 69 350-422 117-187 (241)
142 PF10650 zf-C3H1: Putative zin 83.0 0.63 1.4E-05 31.2 1.1 19 194-213 2-21 (23)
143 PF12872 OST-HTH: OST-HTH/LOTU 82.3 1.8 3.8E-05 35.4 3.8 68 243-321 2-72 (74)
144 KOG1365 RNA-binding protein Fu 81.7 1.7 3.7E-05 47.3 4.3 75 348-423 280-360 (508)
145 KOG0115 RNA-binding protein p5 80.9 1.4 3E-05 45.6 3.2 74 349-423 32-112 (275)
146 KOG2253 U1 snRNP complex, subu 79.1 2 4.2E-05 49.6 3.9 100 313-422 9-108 (668)
147 KOG2494 C3H1-type Zn-finger pr 78.2 0.76 1.7E-05 48.9 0.4 23 192-214 37-60 (331)
148 PF08675 RNA_bind: RNA binding 78.2 8.8 0.00019 33.7 6.7 57 347-409 8-64 (87)
149 PF03880 DbpA: DbpA RNA bindin 76.9 5.9 0.00013 33.1 5.3 59 359-422 11-74 (74)
150 KOG1763 Uncharacterized conser 75.0 1.2 2.5E-05 47.0 0.6 21 194-214 94-114 (343)
151 KOG1040 Polyadenylation factor 74.9 1.5 3.2E-05 47.0 1.4 22 193-214 106-128 (325)
152 COG5084 YTH1 Cleavage and poly 72.7 1.7 3.7E-05 45.8 1.2 24 192-215 134-158 (285)
153 KOG1677 CCCH-type Zn-finger pr 63.7 3.3 7.1E-05 43.7 1.2 27 188-214 128-156 (332)
154 PF03467 Smg4_UPF3: Smg-4/UPF3 61.6 8 0.00017 37.9 3.3 66 348-414 7-82 (176)
155 KOG1040 Polyadenylation factor 61.2 3.6 7.7E-05 44.2 0.9 26 189-214 74-99 (325)
156 KOG4210 Nuclear localization s 60.5 4.9 0.00011 42.3 1.7 78 346-424 86-167 (285)
157 KOG1492 C3H1-type Zn-finger pr 58.9 4 8.7E-05 41.5 0.7 22 193-214 207-229 (377)
158 COG5152 Uncharacterized conser 49.3 6.8 0.00015 39.4 0.6 24 191-214 140-164 (259)
159 PF07576 BRAP2: BRCA1-associat 48.9 1.1E+02 0.0024 27.9 8.3 66 348-414 13-81 (110)
160 COG5084 YTH1 Cleavage and poly 44.8 11 0.00024 39.9 1.3 25 190-214 102-126 (285)
161 KOG2494 C3H1-type Zn-finger pr 44.3 11 0.00023 40.6 1.1 30 184-214 63-92 (331)
162 KOG1492 C3H1-type Zn-finger pr 40.7 10 0.00023 38.6 0.4 23 192-215 261-283 (377)
163 KOG2591 c-Mpl binding protein, 40.3 54 0.0012 37.8 5.8 67 348-418 174-245 (684)
164 KOG4574 RNA-binding protein (c 39.6 22 0.00047 42.6 2.7 78 344-424 294-373 (1007)
165 KOG4454 RNA binding protein (R 38.3 6.3 0.00014 40.3 -1.5 70 348-418 80-156 (267)
166 COG5063 CTH1 CCCH-type Zn-fing 37.8 17 0.00036 38.9 1.4 26 189-214 271-297 (351)
167 KOG2318 Uncharacterized conser 35.5 1.1E+02 0.0023 35.6 7.2 74 345-419 171-300 (650)
168 COG5252 Uncharacterized conser 33.7 16 0.00034 37.8 0.4 22 193-214 86-107 (299)
169 PF15513 DUF4651: Domain of un 33.1 64 0.0014 26.8 3.7 19 364-382 9-27 (62)
170 KOG0804 Cytoplasmic Zn-finger 30.7 1.3E+02 0.0027 34.1 6.6 66 348-414 74-142 (493)
171 KOG2202 U2 snRNP splicing fact 27.5 28 0.00061 36.3 1.0 27 188-214 148-174 (260)
172 KOG2333 Uncharacterized conser 26.5 41 0.00089 38.3 2.1 22 195-216 117-139 (614)
173 KOG4660 Protein Mei2, essentia 25.3 1.1E+02 0.0023 35.3 5.0 77 350-427 390-475 (549)
174 KOG1039 Predicted E3 ubiquitin 23.4 37 0.00081 36.9 1.1 26 189-214 246-273 (344)
175 KOG1813 Predicted E3 ubiquitin 21.3 34 0.00074 36.4 0.3 26 189-214 183-209 (313)
176 PF07292 NID: Nmi/IFP 35 domai 21.0 1.2E+02 0.0027 26.7 3.6 34 390-423 1-37 (88)
177 PF02714 DUF221: Domain of unk 20.7 85 0.0018 32.8 3.1 34 390-425 1-34 (325)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=4.7e-15 Score=138.87 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||++| ++++||++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|+|+
T Consensus 31 ~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345779999999 899999999999999999999999986 689999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9987654
No 2
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.8e-16 Score=164.89 Aligned_cols=153 Identities=22% Similarity=0.337 Sum_probs=118.5
Q ss_pred HHHhhccccccccccccccccccCCccHHHHHHHhhhccccccCCCCcchhhhccccc--cccccCCCCCCCCCCCCCCc
Q 008081 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVP--KYLEYSGEKSDPGGIVAGSR 349 (578)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkn~ir~idr~~GQ~~vvl~ed~~--K~~~~r~~r~d~~~~~~~~r 349 (578)
+||+||.+.+...++.++++ ..+||+|.++-.|. ..++.|...|.+-.+--.-... ||.+ +++. .....+
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~Alhn~ktlpG~~~pvqvk~Ad--~E~e----r~~~e~ 125 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINALHNQKTLPGMHHPVQVKYAD--GERE----RIVEER 125 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHHhhcccccCCCCcceeecccc--hhhh----ccccch
Confidence 79999999998877777776 55689999888766 5666666666654322111111 2322 2221 125678
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCce-E--cCeEEEEeecc
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-V--CGARVLVKPYR 423 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~-I--~Gr~V~Vk~Ak 423 (578)
|||||-| +..+||.+|+++|++||.|++|+|.+| .+||||||+|.+.|.|..|++.||+.. + |...+.|+||.
T Consensus 126 KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 126 KLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred hhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 9999999 889999999999999999999999996 899999999999999999999999854 4 55799999999
Q ss_pred cCccchhhhh
Q 008081 424 EKSRLVDRKY 433 (578)
Q Consensus 424 ~K~k~~~r~~ 433 (578)
+++.+..++.
T Consensus 205 tqkdk~~~~l 214 (510)
T KOG0144|consen 205 TQKDKDGKRL 214 (510)
T ss_pred cCCCchHHHH
Confidence 8876665553
No 3
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=6e-15 Score=152.66 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~m-n~~~I~Gr~V~Vk~Ak~ 424 (578)
...++||||+| ...++|.+|+++|.+||+|+.|++.. .+++|||+|.+.++|+.|.++. |...|+|.+|+|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45679999999 67999999999999999999999988 8889999999999999999885 77889999999999887
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=7.7e-14 Score=145.29 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...+|||+|| ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|+..||+..|+||.|+|.++
T Consensus 268 ~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3458999999 789999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
..|.+
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 88765
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3e-14 Score=141.34 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...|||||+| .|+++.|+|++||++||+|+++.|+.| ++||||||||.+.++|.+|++. ...+|+||+..|+.|
T Consensus 11 ~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 4569999999 899999999999999999999999997 8999999999999999999999 678899999999876
Q ss_pred c
Q 008081 423 R 423 (578)
Q Consensus 423 k 423 (578)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=3.5e-13 Score=140.38 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 579999999 899999999999999999999999986 588999999999999999999999999999999999998
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
++..
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7653
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=2.7e-13 Score=143.65 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEe
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVK 420 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G--r~V~Vk 420 (578)
..++|||++| ++.+||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||++.+.| +.|.|+
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 4568999999 899999999999999999999999986 568999999999999999999999999977 789999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
+++++.+..
T Consensus 271 ~a~~~~~~~ 279 (346)
T TIGR01659 271 LAEEHGKAK 279 (346)
T ss_pred ECCcccccc
Confidence 998765543
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4.1e-13 Score=107.05 Aligned_cols=67 Identities=21% Similarity=0.474 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 351 IyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
|||+|| +.++|+++|+++|++||.|..+.++.+ +.+|||||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 899999999999999999999999884 7799999999999999999999999999999885
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.42 E-value=3.9e-13 Score=150.82 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| +.++++++|+++|+.||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 899999999999999999999999986 68999999999999999999999999999999999998
Q ss_pred ccCc
Q 008081 423 REKS 426 (578)
Q Consensus 423 k~K~ 426 (578)
..+.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8653
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.41 E-value=4e-13 Score=149.56 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
....+|||+|| ++++|+++|+++|++||.|++|+|+.| ++||||||+|.+.++|.+|+..||+..|+|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999 889999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred ccCccchh
Q 008081 423 REKSRLVD 430 (578)
Q Consensus 423 k~K~k~~~ 430 (578)
..|..+..
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 98765543
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.2e-13 Score=135.42 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=107.2
Q ss_pred HHHhhccccccccccccccccccCCccHHHHHHHhhhccccccCCCCcchhhhcccccccccc-CC--CCCCC-------
Q 008081 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEY-SG--EKSDP------- 341 (578)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkn~ir~idr~~GQ~~vvl~ed~~K~~~~-r~--~r~d~------- 341 (578)
-|.+||++-.+..+.. -+-.+..||+|..+--+. +.-+.|+...||= |+....+.... |. +++..
T Consensus 82 aF~pFGevS~akvirD-~~T~KsKGYgFVSf~~k~-dAEnAI~~MnGqW---lG~R~IRTNWATRKp~e~n~~~ltfdeV 156 (321)
T KOG0148|consen 82 AFAPFGEVSDAKVIRD-MNTGKSKGYGFVSFPNKE-DAENAIQQMNGQW---LGRRTIRTNWATRKPSEMNGKPLTFDEV 156 (321)
T ss_pred HhccccccccceEeec-ccCCcccceeEEeccchH-HHHHHHHHhCCee---eccceeeccccccCccccCCCCccHHHH
Confidence 3778888866553332 222344589988777666 5556676666643 11111111100 11 11110
Q ss_pred -CCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 342 -GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 342 -~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....+.+.+||||++ ..-+||+++|+.|+.||+|.+|||-+ -+||+||.|++.|.|..||..||+..|.|..|+|.
T Consensus 157 ~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 157 YNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred hccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 233566889999999 56799999999999999999999998 79999999999999999999999999999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
|-++-....
T Consensus 234 WGKe~~~~~ 242 (321)
T KOG0148|consen 234 WGKEGDDGI 242 (321)
T ss_pred ccccCCCCC
Confidence 988765443
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1e-12 Score=139.34 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||+..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3456789999999 899999999999999999999999986 68899999999999999999999999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.++++..
T Consensus 182 ~~a~p~~ 188 (346)
T TIGR01659 182 SYARPGG 188 (346)
T ss_pred ecccccc
Confidence 9987643
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=7.1e-13 Score=136.63 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
...++|+|.|| ++.+.|-||+..|++||+|.||.|+.. .+||||||||++.++|++|-+++++..|.||+|+|+.|.
T Consensus 94 ~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 44679999999 899999999999999999999999995 689999999999999999999999999999999999998
Q ss_pred cC
Q 008081 424 EK 425 (578)
Q Consensus 424 ~K 425 (578)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 76
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.3e-12 Score=132.73 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC-CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dk-sRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.|+ .+|||||+|.++++|+.|+. ||+..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999 8999999999999999999999999984 78999999999999999995 799999999999999764
No 15
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.5e-13 Score=132.65 Aligned_cols=80 Identities=26% Similarity=0.405 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...|+||||+| ..++||.-|-..|-.||.|.+|.||.| ++||||||+|+..|+|.+|+..||...++||.|+|+.
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45689999999 678999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
|+|..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98764
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.31 E-value=7.3e-12 Score=135.45 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
+..++|||+|| +..+|+++|+++|++||.|..|+|+++ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45789999999 789999999999999999999999985 6799999999999999999999999999999999999
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 874
No 17
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7.9e-12 Score=127.69 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 008081 337 EKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (578)
Q Consensus 337 ~r~d~~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I 412 (578)
..+|..+.+.+.+||||+.| +++++|..|+..|+.||+|..|+|++| +++|||||.|+++-++..|++..++..|
T Consensus 90 P~~dp~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCcccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 45566778889999999999 899999999999999999999999997 8999999999999999999999999999
Q ss_pred cCeEEEEeeccc
Q 008081 413 CGARVLVKPYRE 424 (578)
Q Consensus 413 ~Gr~V~Vk~Ak~ 424 (578)
+|++|.|..-..
T Consensus 169 dgrri~VDvERg 180 (335)
T KOG0113|consen 169 DGRRILVDVERG 180 (335)
T ss_pred cCcEEEEEeccc
Confidence 999999976443
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.31 E-value=5.7e-12 Score=140.38 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARV 417 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~----Gr~V 417 (578)
....++|||+|| +.++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.+++..|. |+.+
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 345678999999 889999999999999999999999986 67999999999999999999999999999 9999
Q ss_pred EEeecccCccc
Q 008081 418 LVKPYREKSRL 428 (578)
Q Consensus 418 ~Vk~Ak~K~k~ 428 (578)
.|.+++.+.+.
T Consensus 254 ~v~~a~~k~er 264 (562)
T TIGR01628 254 YVGRAQKRAER 264 (562)
T ss_pred EeecccChhhh
Confidence 99999877655
No 19
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=6.5e-12 Score=134.80 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCH--HHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFA--ETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~--e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
...-+|||||| .+.+|++||+..|+.||.|.+|.|++...||||||+|... ..+.+|++.||+..+.||.|+|..|+
T Consensus 8 ~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34569999999 8999999999999999999999999977799999999987 78999999999999999999999988
Q ss_pred cC
Q 008081 424 EK 425 (578)
Q Consensus 424 ~K 425 (578)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 64
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.25 E-value=2.2e-11 Score=98.50 Aligned_cols=67 Identities=36% Similarity=0.568 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 351 IyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
|||+|| ++.+++++|+++|+.||.|..|++.++ +.+|+|||+|.+.++|++|++..++..|+|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 789999999999999999999999985 3589999999999999999999988999999875
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.4e-11 Score=118.02 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
...++|||||| ...+++.||+..|+.||+|..|.|.+ ...|||||+|+++.+|+.|+..||+..|||.+|.|+...-+
T Consensus 8 ~~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 34679999999 89999999999999999999999987 68999999999999999999999999999999999987655
Q ss_pred cc
Q 008081 426 SR 427 (578)
Q Consensus 426 ~k 427 (578)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=4.4e-11 Score=93.40 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
+|||+++ +..+++++|+++|.+||+|..+++..+ ..+|+|||+|.+.+.|+.|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 788999999999999999999999885 367999999999999999999999999999999874
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.8e-11 Score=137.53 Aligned_cols=78 Identities=19% Similarity=0.365 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||||| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+||.|+|.+
T Consensus 105 ~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34579999999 899999999999999999999999986 7899999999999999999999999999999999986
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 24
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=3.2e-11 Score=121.26 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
+...+|||+|| ++.+||++|+++|+.||+|++|+|++| +.+|||||+|.+++.|+.|+. |++..|.++.|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 34579999999 899999999999999999999999997 677899999999999999995 699999999999998654
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.9e-11 Score=122.27 Aligned_cols=83 Identities=14% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..--+|||.| ..+++.|+||+.|.+||+|.+++|++| ++||||||.|-+.++|+.|+..||+++|++|.|+-+||
T Consensus 61 ~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3558999999 889999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccCccchh
Q 008081 423 REKSRLVD 430 (578)
Q Consensus 423 k~K~k~~~ 430 (578)
..|....+
T Consensus 140 TRKp~e~n 147 (321)
T KOG0148|consen 140 TRKPSEMN 147 (321)
T ss_pred ccCccccC
Confidence 88874333
No 26
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=1.7e-11 Score=127.99 Aligned_cols=153 Identities=22% Similarity=0.328 Sum_probs=103.8
Q ss_pred HHHhhccccccccccccccccccCCccHHHHHHHhhhccccccCCCCcchhhhccccccccccCCCCCCCCCCCCCCcEE
Q 008081 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQI 351 (578)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkn~ir~idr~~GQ~~vvl~ed~~K~~~~r~~r~d~~~~~~~~rtI 351 (578)
||..||.++++-....... .-..||+|..+...--=.-++.++.|--.-..+ |..+.+ .|.+.... ......++|
T Consensus 26 yf~~~Gev~d~~vm~d~~t-~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~v--e~k~av-~r~~~~~~-~~~~~tkki 100 (311)
T KOG4205|consen 26 YFSQFGEVTDCVVMRDPST-GRSRGFGFVTFATPEGVDAVLNARTHKLDGRSV--EPKRAV-SREDQTKV-GRHLRTKKI 100 (311)
T ss_pred HhcccCceeeEEEeccCCC-CCcccccceecCCCcchheeecccccccCCccc--cceecc-Cccccccc-ccccceeEE
Confidence 7788999988765554433 234477766554222111122233322110000 000101 11111111 122357799
Q ss_pred EEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCcc
Q 008081 352 YLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSR 427 (578)
Q Consensus 352 yVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~k 427 (578)
|||+| +.+++|+++++||.+||.|.++-+++| +.||||||+|..++.+++++.. ..|.|+|+.|.|+.|.+|..
T Consensus 101 FvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 101 FVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred EecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhh
Confidence 99999 899999999999999999999999997 7899999999999999999998 89999999999999999976
Q ss_pred chhh
Q 008081 428 LVDR 431 (578)
Q Consensus 428 ~~~r 431 (578)
....
T Consensus 179 ~~~~ 182 (311)
T KOG4205|consen 179 MQST 182 (311)
T ss_pred cccc
Confidence 6543
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=8.2e-11 Score=112.81 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+|||+|| ++.+|+++|+++|.+||+|..|+|+.| +.||||||+|.+.+.|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999 899999999999999999999999886 789999999999999999999999999999999999976
Q ss_pred c
Q 008081 424 E 424 (578)
Q Consensus 424 ~ 424 (578)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 28
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.8e-11 Score=118.72 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...+|=|.|| +.+++|++|+++|..||.|..|+|.+| .+||||||+|.+.++|.+|++.|||+-+++--|+|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999 889999999999999999999999997 78999999999999999999999999999999999999
Q ss_pred ccC
Q 008081 423 REK 425 (578)
Q Consensus 423 k~K 425 (578)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.3e-10 Score=90.31 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=61.5
Q ss_pred EcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 353 LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 353 Vg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
|++| +..+++++|+++|++||+|..++|..+ +++|||||+|.+.+.|..|+..+++..+.|++|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 788999999999999999999999885 348999999999999999999999999999999873
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=1.4e-10 Score=126.99 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++.+|+++|+++|++||.|..+.|+.+ +++|||||+|.+.+.|..|++.||+..|.|+.|.|++
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34679999999 899999999999999999999999885 5899999999999999999999999999999999999
Q ss_pred cccC
Q 008081 422 YREK 425 (578)
Q Consensus 422 Ak~K 425 (578)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.4e-10 Score=127.68 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.+...+|||+|| ++ .+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|..|+..||++.|.|+.|+|.+++
T Consensus 272 ~~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 356789999999 65 6999999999999999999999986 58999999999999999999999999999999999986
Q ss_pred cCc
Q 008081 424 EKS 426 (578)
Q Consensus 424 ~K~ 426 (578)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 543
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.15 E-value=1.5e-10 Score=129.77 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fsqf--G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
...++|||+|| ++.+||++|+++|++| |+|++|+++ ++||||+|++.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999 8999999999999999 999999875 5799999999999999999999999999999999998
Q ss_pred cCccc
Q 008081 424 EKSRL 428 (578)
Q Consensus 424 ~K~k~ 428 (578)
++.+.
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86543
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.5e-10 Score=127.40 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh--CCCceEcCeEEEEeeccc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK--GNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~--mn~~~I~Gr~V~Vk~Ak~ 424 (578)
++++|||+|| ++++||++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++. +++..|.|+.|.|.++..
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 4689999999 89999999999999999999999997 789999999999999999996 478999999999999875
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 4
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.14 E-value=5.4e-11 Score=116.57 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...+|-|-|| .+.++.++|+..|++||.|-||.|++| ++||||||-|-+..+|+.|++.|++..|+|+.|.|..|
T Consensus 12 gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 4568999999 899999999999999999999999998 78999999999999999999999999999999999887
Q ss_pred cc
Q 008081 423 RE 424 (578)
Q Consensus 423 k~ 424 (578)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 63
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.12 E-value=1.7e-10 Score=129.45 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~-Gr~V~Vk~ 421 (578)
....+|||+|| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34579999999 889999999999999999999999986 78999999999999999999999998885 78887776
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
+.+
T Consensus 135 S~~ 137 (578)
T TIGR01648 135 SVD 137 (578)
T ss_pred ccc
Confidence 643
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=2.9e-10 Score=123.11 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| +..+++++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|+. |++..+.|+.|.|..
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34679999999 889999999999999999999999986 679999999999999999997 699999999999988
Q ss_pred cccC
Q 008081 422 YREK 425 (578)
Q Consensus 422 Ak~K 425 (578)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7544
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5.6e-10 Score=87.57 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=65.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
+|||++| +..+++++|+++|+.||+|..+.+..+ +.+|+|||+|.+.+.|+.|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 788999999999999999999999885 3489999999999999999999999999999999864
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=4e-10 Score=88.17 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 366 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 366 Lr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
|.++|++||+|.+|.+...+ +++|||+|.+.++|+.|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998843 599999999999999999999999999999999885
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.09 E-value=1.4e-10 Score=111.76 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....||||||| +..++++-|++.|-+.|+|++++||+| .++|||||+|.++|+|+-|++.||...+.||+|+|..
T Consensus 7 nqd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34569999999 899999999999999999999999997 6899999999999999999999999999999999998
Q ss_pred cc
Q 008081 422 YR 423 (578)
Q Consensus 422 Ak 423 (578)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=6.6e-10 Score=118.70 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
....-+-|||.|| ..++|||.|++.|++||.|+.|+.++| ||||.|...++|-+|++.||+..|+|..|.|..|+
T Consensus 255 ~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4455789999999 789999999999999999999998865 99999999999999999999999999999999999
Q ss_pred cCccc
Q 008081 424 EKSRL 428 (578)
Q Consensus 424 ~K~k~ 428 (578)
|..+.
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 86543
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=8e-11 Score=113.47 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.-..+.-|||||| ++++||.||-..|++||+|++|.+++| +++||||..|++..+--.|+..+||..|.||.|+|
T Consensus 31 ~YkdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 31 EYKDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hcccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 3355678999999 899999999999999999999999997 89999999999999999999999999999999999
Q ss_pred eec
Q 008081 420 KPY 422 (578)
Q Consensus 420 k~A 422 (578)
...
T Consensus 110 DHv 112 (219)
T KOG0126|consen 110 DHV 112 (219)
T ss_pred eec
Confidence 754
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=3.6e-10 Score=118.22 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...+||||+| +|++++|.|++||++||+|.+|.|++| ++|||+||+|++.+.+.+++.. ..|.|+|+.|.++.|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5679999999 999999999999999999999999997 8999999999999999999988 789999999999999
Q ss_pred ccCccch
Q 008081 423 REKSRLV 429 (578)
Q Consensus 423 k~K~k~~ 429 (578)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9876433
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.97 E-value=1.4e-09 Score=118.17 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCC-cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 345 VAGS-RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 345 ~~~~-rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.+.. +.||||++ +++++|++|.++|+..|+|.++++++| +.|||||++|.+.++|..|++.+|+..+.||+|+|
T Consensus 14 ~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 14 SPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred CcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 3444 89999999 899999999999999999999999997 88999999999999999999999999999999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.++.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99875543
No 44
>smart00361 RRM_1 RNA recognition motif.
Probab=98.96 E-value=2.3e-09 Score=88.08 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=51.4
Q ss_pred HHHHHHHhh----cCCCeeEEE-eecc------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 363 EQDVSNYFS----KFGPVQDVR-IPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 363 EedLr~~Fs----qfG~V~dVr-I~~d------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
+++|+++|+ +||+|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..++||.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=4.6e-09 Score=93.47 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
..++-|||.|| ++.+|.|++-++|++||.|..|||=.. .-||-|||.|++..+|++|++.|++..++++-+.|-.+++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34789999999 899999999999999999999999654 6799999999999999999999999999999999988765
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
-
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.9e-09 Score=116.05 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
.-+|.|.|| +|.+.+.+|+.+|++||.|.+|.||+. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 458999999 899999999999999999999999983 5579999999999999999999999999999999999999
Q ss_pred Cccchh
Q 008081 425 KSRLVD 430 (578)
Q Consensus 425 K~k~~~ 430 (578)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 876554
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=4.7e-09 Score=112.29 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE-cCeEEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV-CGARVLV 419 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I-~Gr~V~V 419 (578)
.+...-||||.| +.++.|++|.-+|++-|+|-++|||+| .+||||||||.+-+.|+.|++.+|++.| .|+.|.|
T Consensus 80 p~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 356779999999 899999999999999999999999997 7899999999999999999999999988 6888888
Q ss_pred eecc
Q 008081 420 KPYR 423 (578)
Q Consensus 420 k~Ak 423 (578)
+...
T Consensus 159 c~Sv 162 (506)
T KOG0117|consen 159 CVSV 162 (506)
T ss_pred EEee
Confidence 6544
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.89 E-value=1.5e-09 Score=118.45 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=105.3
Q ss_pred hhHHHhhcccccccccccc-ccccccCCcc----H--HHHHHHhhhccccccCCCCcchhhhccccccccc-cCCCCCCC
Q 008081 270 MMYYEKYGKTLQAEGYLTE-SQRHGKAGYS----L--TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLE-YSGEKSDP 341 (578)
Q Consensus 270 ~~y~ek~G~~l~~~~~~~e-sqR~gk~Gys----~--~k~l~~lkn~ir~idr~~GQ~~vvl~ed~~K~~~-~r~~r~d~ 341 (578)
..+|...|++.-+..+... ++|.++.+|- . +-+..-|. -.+..|+..++...+++|-.. ....-.+.
T Consensus 197 ~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLs-----Gqrllg~pv~vq~sEaeknr~a~~s~a~~~ 271 (549)
T KOG0147|consen 197 EEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALS-----GQRLLGVPVIVQLSEAEKNRAANASPALQG 271 (549)
T ss_pred HHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhc-----CCcccCceeEecccHHHHHHHHhccccccc
Confidence 3467777888776654433 4554444552 0 11111121 123445555555555554321 11111222
Q ss_pred CCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 008081 342 GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (578)
Q Consensus 342 ~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V 417 (578)
+....+.+.+||||| .+.++|++|+..|+.||.|+.|.++.| +++|||||+|.+.+.|++|++.||+.+|-||.|
T Consensus 272 k~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 272 KGFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLI 350 (549)
T ss_pred cccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceE
Confidence 222233334999999 999999999999999999999999986 899999999999999999999999999999999
Q ss_pred EEeecccCccch
Q 008081 418 LVKPYREKSRLV 429 (578)
Q Consensus 418 ~Vk~Ak~K~k~~ 429 (578)
+|....++.+..
T Consensus 351 kV~~v~~r~~~~ 362 (549)
T KOG0147|consen 351 KVSVVTERVDTK 362 (549)
T ss_pred EEEEeeeecccc
Confidence 999887776544
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=9.7e-10 Score=114.90 Aligned_cols=162 Identities=15% Similarity=0.274 Sum_probs=108.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+||||.+ .+++.|+.||..|..||+|.+|.+..| ++||||||+|+-+|.|+.|++.||+..++||.|+|.+-.
T Consensus 113 McRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 357999999 899999999999999999999999887 899999999999999999999999999999999998543
Q ss_pred cCcc---chhhhhhhhhc-CCCccCCCCCCC-cccccccccccCcHHHHhhhHHHHH--HHHHHHHHhHHhhhccCCCCC
Q 008081 424 EKSR---LVDRKYVEKMQ-HPMFCSLHFTDG-DTELHTMPRACNNSRLLRKQLMEEH--EQAIELERRRLSEMQLACKPM 496 (578)
Q Consensus 424 ~K~k---~~~r~~~~~~~-~~~~~sp~~~~~-D~~l~~~~R~~~ne~~lrrq~~Ee~--~q~lE~qrrrL~~lql~~k~~ 496 (578)
.-.. ..+.-+.+... ...|-..-+-|. +.++.+++.-+. +.++.++.... ....-.-.-++.++|-.+..+
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 2211 11111111111 111222222232 455666554444 34444443211 111222233455666666677
Q ss_pred CCCCCCCCCccccccc
Q 008081 497 NHHSYFGYSMDELQVS 512 (578)
Q Consensus 497 ~~~~~~~~~~~~~~~~ 512 (578)
..++-|++...-++|.
T Consensus 270 asMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVG 285 (544)
T ss_pred hhcchhhcccceEecc
Confidence 7888888887777765
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.85 E-value=3.2e-09 Score=108.56 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
...+.||+|||+ .++++..+||..|.+||+|.+|.|+ |+|+||.|+..++|..|+..||+..++|++++|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 456789999999 8899999999999999999999997 56999999999999999999999999999999988765
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
+
T Consensus 150 r 150 (346)
T KOG0109|consen 150 R 150 (346)
T ss_pred c
Confidence 5
No 51
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.9e-09 Score=96.37 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
..+.||||||| ++.++||+|.++|++.|+|..|-|=.| ..-||+||.|-..++|+.|+..+++..++.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45789999999 899999999999999999999866555 4579999999999999999999999999999999987
Q ss_pred c
Q 008081 422 Y 422 (578)
Q Consensus 422 A 422 (578)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.81 E-value=1.4e-08 Score=111.49 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcC------------CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKF------------GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~Fsqf------------G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I 412 (578)
....++|||||| ++.+|+++|+++|.+| +.|..+.+.. .+|||||+|.+.+.|..||+ ||+..|
T Consensus 172 ~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345689999999 8999999999999975 4666676655 79999999999999999994 899999
Q ss_pred cCeEEEEeecc
Q 008081 413 CGARVLVKPYR 423 (578)
Q Consensus 413 ~Gr~V~Vk~Ak 423 (578)
.|+.|+|.+..
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997644
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=8.1e-09 Score=100.05 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
...++|||||| +.++.|.+|+++|.+||.|.+|.+-.- ..-.||||.|+++.+|+.|+..-++..++|.+|+|+++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35679999999 789999999999999999999987442 3467999999999999999999999999999999999875
Q ss_pred Cc
Q 008081 425 KS 426 (578)
Q Consensus 425 K~ 426 (578)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 43
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=6.1e-08 Score=105.92 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhC-----CC-ceEcCeEEE
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-----NP-HFVCGARVL 418 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~m-----n~-~~I~Gr~V~ 418 (578)
++|||.|| ++++||++|.++|++||+|..+.|+.+ .++|.|||.|.+..+|..+|+.. .+ ..|+||.|.
T Consensus 293 ~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 69999999 899999999999999999999999885 88999999999999999999975 34 789999999
Q ss_pred EeecccCccc
Q 008081 419 VKPYREKSRL 428 (578)
Q Consensus 419 Vk~Ak~K~k~ 428 (578)
|..|..+...
T Consensus 372 v~~Av~RkeA 381 (678)
T KOG0127|consen 372 VTLAVTRKEA 381 (678)
T ss_pred eeeccchHHH
Confidence 9999887543
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.4e-08 Score=100.93 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
=.|||-|| ..+.+|.-||..|+.||.|+.|+|++| +.||||||+..+.++|.-|+..+|+..+.+|.+.|.+-..
T Consensus 279 ~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 279 WCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 38999999 788999999999999999999999998 8999999999999999999999999999999999987543
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
|
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 3
No 56
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=2.4e-08 Score=101.01 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.....|.|.-| +..+|+|+||.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+|+..+..+.|+|.+
T Consensus 39 ~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34457888888 889999999999999999999999997 7899999999999999999999999999999999999
Q ss_pred cccCccc
Q 008081 422 YREKSRL 428 (578)
Q Consensus 422 Ak~K~k~ 428 (578)
|+|-...
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9986543
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.73 E-value=1.6e-08 Score=113.79 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCcc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSR 427 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~k 427 (578)
++|||||+| +..++|.||++.|+.||+|++|.++. .||+|||+.....+|.+|+.+|+.+.+.++.|+|.||..++-
T Consensus 421 SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 789999999 89999999999999999999999988 999999999999999999999999999999999999998876
Q ss_pred ch
Q 008081 428 LV 429 (578)
Q Consensus 428 ~~ 429 (578)
..
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 55
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=1.9e-08 Score=103.04 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=70.4
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCccc
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~k~ 428 (578)
-+|||||| +..+++.+|+.+|++||+|.+|.|++ .||||.-++...++.|+..|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 47999999 88999999999999999999999974 69999999999999999999999999999999999888554
Q ss_pred h
Q 008081 429 V 429 (578)
Q Consensus 429 ~ 429 (578)
.
T Consensus 78 s 78 (346)
T KOG0109|consen 78 S 78 (346)
T ss_pred c
Confidence 4
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.1e-08 Score=93.07 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
-|||+++ ....||+++.+.|..||+|..+.+-.| -.+|||.|.|++.+.|++|++.+|+..|-|..|.|.|+--+
T Consensus 74 Ii~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 7999999 889999999999999999999999776 46999999999999999999999999999999999998655
Q ss_pred cc
Q 008081 426 SR 427 (578)
Q Consensus 426 ~k 427 (578)
+.
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 44
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.8e-08 Score=106.07 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCC-ceEcC--eEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNP-HFVCG--ARVL 418 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~-~~I~G--r~V~ 418 (578)
...-|+|||-+ +..++|.|||.+|++||.|.+|.|++| .++||+||+|.+.++|.+|+..+.. ..|-| ..|.
T Consensus 32 ~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34459999999 889999999999999999999999998 6899999999999999999999844 44544 6889
Q ss_pred EeecccCccc
Q 008081 419 VKPYREKSRL 428 (578)
Q Consensus 419 Vk~Ak~K~k~ 428 (578)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9998654443
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.67 E-value=5.2e-08 Score=96.85 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHH----HhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSN----YFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~----~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.++.||||.|| ...+..++|++ +|++||.|.+|....- +.||=|||.|.+.+.|-.|+..|+|..+.|+.++|.
T Consensus 7 ~pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34459999999 78899999999 9999999999977654 789999999999999999999999999999999999
Q ss_pred ecccCccchhh
Q 008081 421 PYREKSRLVDR 431 (578)
Q Consensus 421 ~Ak~K~k~~~r 431 (578)
+|+.+.....+
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99998877655
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.2e-08 Score=105.27 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=72.4
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCccc
Q 008081 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (578)
Q Consensus 351 IyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~k~ 428 (578)
|||-|| +.+++..+|.+.|+.||+|.+|++..+ .++|| ||.|++++.|++|++.+|+..+.|+.|.|..+..+.++
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 899999999999999999999999997 68999 99999999999999999999999999999988876654
Q ss_pred h
Q 008081 429 V 429 (578)
Q Consensus 429 ~ 429 (578)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 4
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.65 E-value=3.4e-08 Score=95.58 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dV-rI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....+|||||| +..++|.-|.+.|+.||.+... .|++| .++|||||.|++.|.+.+|++.||++.+++|+|.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 44579999999 7799999999999999998764 55554 789999999999999999999999999999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 998776544
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.6e-08 Score=101.21 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC----CCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dk----sRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
...|+.+-|||--| ..-+|.+||.-+|+.||+|..|.|++|+ +-.||||.|++.+++++|+-+|+...|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 55688899999999 6788999999999999999999999983 566999999999999999999999999999999
Q ss_pred EeecccC
Q 008081 419 VKPYREK 425 (578)
Q Consensus 419 Vk~Ak~K 425 (578)
|.+.+.-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9876643
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=1.4e-07 Score=95.84 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCce-EcC--eE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-VCG--AR 416 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~-I~G--r~ 416 (578)
..+...||||||-| ...-.|||++..|..||+|++|.+.++ .+||+|||.|.+.-+|+.||..+.+.. +-| ..
T Consensus 14 srg~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 33447889999999 788899999999999999999999984 799999999999999999999986643 333 57
Q ss_pred EEEeecccCccchhhhhhh
Q 008081 417 VLVKPYREKSRLVDRKYVE 435 (578)
Q Consensus 417 V~Vk~Ak~K~k~~~r~~~~ 435 (578)
+.||++...+++..|+-++
T Consensus 93 LVVK~ADTdkER~lRRMQQ 111 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQ 111 (371)
T ss_pred eEEEeccchHHHHHHHHHH
Confidence 8899997766666655433
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=1.3e-07 Score=96.16 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
..+|....|||-.| +.++.+.+|-..|-.||.|++.+|-.| ++|.||||.|+++.+|++||..|||..|+=+|++
T Consensus 280 reGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 45688899999999 789999999999999999999999887 8999999999999999999999999999999999
Q ss_pred EeecccCcc
Q 008081 419 VKPYREKSR 427 (578)
Q Consensus 419 Vk~Ak~K~k 427 (578)
|..-++|..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 988766643
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.4e-07 Score=98.35 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
.....|||.|+ +..++++.|+++|+.||+|..++|+.+ +++|||||.|...++|..|+..+|+..+.++.+.|.++
T Consensus 268 ~~~~nl~vknl-d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 268 LQGANLYVKNL-DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred ccccccccccC-ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 44669999999 889999999999999999999999985 89999999999999999999999999999999999998
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
+.+..
T Consensus 347 qr~~~ 351 (369)
T KOG0123|consen 347 QRKED 351 (369)
T ss_pred hhhcc
Confidence 84443
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.40 E-value=5.4e-07 Score=88.77 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcC-CCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fsqf-G~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....-+||..+ +.-+.|..+..||.+| |.|..+++.+. .+||||||.|++++.|+-|.+.||+..+.|+.+.|.
T Consensus 47 ~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 44557899999 7889999999999998 88889988773 899999999999999999999999999999999998
Q ss_pred ecccC
Q 008081 421 PYREK 425 (578)
Q Consensus 421 ~Ak~K 425 (578)
.--+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76554
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.35 E-value=1.2e-06 Score=94.05 Aligned_cols=76 Identities=28% Similarity=0.314 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fs-qfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...|.+||+|+ ++++.=.+|+++|. +-|+|+.|.+..| +.||+|.|+|+++|.+++|++.||.+.+.||.|.||.
T Consensus 42 ~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567999999 89999999999996 5899999999997 8999999999999999999999999999999999985
Q ss_pred c
Q 008081 422 Y 422 (578)
Q Consensus 422 A 422 (578)
-
T Consensus 121 d 121 (608)
T KOG4212|consen 121 D 121 (608)
T ss_pred c
Confidence 3
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=7.7e-07 Score=93.61 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+|||..+ ..+++|+||+..|+.||+|..|.+.++ .+|||||++|.+..+...|+..||-..++|.-++|..+.
T Consensus 210 fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 347999999 889999999999999999999999886 799999999999999999999999999999999997765
Q ss_pred c
Q 008081 424 E 424 (578)
Q Consensus 424 ~ 424 (578)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 3
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=98.43 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
+|||.|| .+++|.++|...|...|.|.++.|..- .+.|||||.|.+.++|++|+..|+++.|+|+.|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4999999 899999999999999999999999773 24499999999999999999999999999999999998
Q ss_pred c
Q 008081 423 R 423 (578)
Q Consensus 423 k 423 (578)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.24 E-value=1.6e-06 Score=95.31 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.+.|||.+| ...+...||+++|++||+|+-.+|+.. -.|.|||||..+.+.|.+.|+.|....|.||.|.|..++
T Consensus 405 gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 579999999 778888999999999999999999986 458899999999999999999999999999999998776
Q ss_pred c
Q 008081 424 E 424 (578)
Q Consensus 424 ~ 424 (578)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 3
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=1.2e-06 Score=98.57 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+|.|.|+ ++..+-.+|+.+|+.||.|.+|+||.. .+||||||+|-++..|..|+..+-.+.+.||++.+.||+
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 569999999 899999999999999999999999983 579999999999999999999999999999999999998
Q ss_pred cCccc
Q 008081 424 EKSRL 428 (578)
Q Consensus 424 ~K~k~ 428 (578)
....+
T Consensus 692 ~d~~~ 696 (725)
T KOG0110|consen 692 SDNTM 696 (725)
T ss_pred cchHH
Confidence 76543
No 74
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.18 E-value=5.3e-06 Score=93.30 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V 417 (578)
.|..+.+||+|| +..++|+.|-..|+.||+|..|+|+.- +.+-+|||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 567889999999 788999999999999999999999882 678899999999999999999999999999999
Q ss_pred EEeeccc
Q 008081 418 LVKPYRE 424 (578)
Q Consensus 418 ~Vk~Ak~ 424 (578)
++.|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999853
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.17 E-value=7e-07 Score=88.74 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
.+..+||||+|+ ...++||-|.+.|-+-|+|..|.|+.+ ...-||||.|.++-.+..|++.||+..+.++.+.|++-
T Consensus 6 ae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 455789999999 899999999999999999999999885 23339999999999999999999999999999999876
Q ss_pred ccC
Q 008081 423 REK 425 (578)
Q Consensus 423 k~K 425 (578)
..-
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 543
No 76
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.15 E-value=5e-06 Score=90.50 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~----dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+|||++| +.++++.+|+++|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+.-+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 346999999 89999999999999999999999876 34448999999999999999999 7999999999998644
Q ss_pred c
Q 008081 424 E 424 (578)
Q Consensus 424 ~ 424 (578)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=2.9e-06 Score=84.81 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
.++|||++ ++.+.+.+|..+|..||.|.+|.+ +.|||||.|++.-+|..|+-.+|+.+|+|.++.|.+++.+
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46899999 899999999999999999999987 6789999999999999999999999999999888888753
No 78
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.92 E-value=2.8e-05 Score=84.40 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~ 426 (578)
..+.+-+.-.+..--|-++|..+|.+||+|..|.|-+ .---|.|||.+...|-.|... .+..|+||.|+|.|.++-.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 3344444433223346689999999999999998866 445699999999999888777 7899999999999988754
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.83 E-value=5.2e-05 Score=77.32 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.....+|+|.|| ++.++++||+++|.+||++..+-|-+| ++.|.|=|+|...++|.+|++.+++.-++|+.+++..
T Consensus 80 ~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344579999999 899999999999999999999999987 6789999999999999999999999999999999876
Q ss_pred cccC
Q 008081 422 YREK 425 (578)
Q Consensus 422 Ak~K 425 (578)
....
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 5543
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.82 E-value=3.2e-05 Score=83.31 Aligned_cols=73 Identities=22% Similarity=0.136 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~-dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||.|| ++++|=..|++-|..||.|..+.|+. ++++| .|.|.++++|++|+..||+..++||.|+|.+
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 44668999999 89999999999999999999999965 36676 8999999999999999999999999999975
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.72 E-value=4e-05 Score=77.67 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...+.+|||++ ++.+|-+++..+|+.+|.|..|.|++| +.|||+||.|.+.+.++.|+. ||+..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45678999999 888888889999999999999999997 578999999999999999999 899999999999987
Q ss_pred cccC
Q 008081 422 YREK 425 (578)
Q Consensus 422 Ak~K 425 (578)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6544
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.65 E-value=3.8e-05 Score=78.06 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..-+||-|-| .-+++.+-|.+.|.+|=.-...++++| +++|||||.|.+..++..|+.+||+..++.|.|+....
T Consensus 189 ~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3459999999 778999999999999999999999997 89999999999999999999999999999999887654
Q ss_pred ccC
Q 008081 423 REK 425 (578)
Q Consensus 423 k~K 425 (578)
..|
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 433
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=3.7e-05 Score=84.91 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
......++|+|-+| +.++++++|+..|+.||+|..|+.-. .++|-.||.|=|..+|++|++.+++..|.|++++
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34566889999999 89999999999999999999988755 4899999999999999999999999999999998
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.47 E-value=0.00046 Score=69.28 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-cC----CCceEEEEECCHHHHHHHHHhCCCceE---cCeEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQ----KRMFGFVTFVFAETVKQILAKGNPHFV---CGARV 417 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~-dk----sRGfgFVtF~~~e~A~~Al~~mn~~~I---~Gr~V 417 (578)
...|||||.+| +.++...+|-.+|..|---+.+.|-+ ++ .+-+|||+|.+...|.+|+..+||..+ ++..+
T Consensus 32 ~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34789999999 78999999999999986666655533 21 246999999999999999999999998 57899
Q ss_pred EEeecccCccchhhhh
Q 008081 418 LVKPYREKSRLVDRKY 433 (578)
Q Consensus 418 ~Vk~Ak~K~k~~~r~~ 433 (578)
++..|+...|+..++.
T Consensus 111 hiElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKG 126 (284)
T ss_pred EeeehhcCcccccCCC
Confidence 9999988776654443
No 85
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.45 E-value=2.7e-05 Score=53.32 Aligned_cols=23 Identities=43% Similarity=1.246 Sum_probs=18.2
Q ss_pred ccccccccc-ccCCCCCCCccCCC
Q 008081 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrF~Hg 214 (578)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 468999988 99999999999997
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.40 E-value=0.00059 Score=73.37 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
+..|.|.+|....+|.+.|-..|+-||.|..|+|.+. ++--|.|.|.+...|+.|++.++++.|.|++|+|...+-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 6789999998899999999999999999999999995 4478999999999999999999999999999999887643
No 87
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.22 E-value=0.00087 Score=70.82 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d--------VrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
.+..|||.|| +.++|-+++.++|+++|-|.. |++-++ +-+|=|.+.|-..|++..|+..|+...+.|+
T Consensus 133 ~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3556999999 889999999999999998763 344443 6799999999999999999999999999999
Q ss_pred EEEEeecc
Q 008081 416 RVLVKPYR 423 (578)
Q Consensus 416 ~V~Vk~Ak 423 (578)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99998775
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.05 E-value=0.0019 Score=70.85 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
+...-|=+.+| +|+.|++||.+||+-.+ |+.+.+++. +..|=|||+|.++|++++|+++ +...+..|=|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34456777899 89999999999999995 888888884 8899999999999999999999 9999999999998875
Q ss_pred cC
Q 008081 424 EK 425 (578)
Q Consensus 424 ~K 425 (578)
.+
T Consensus 85 ~~ 86 (510)
T KOG4211|consen 85 GA 86 (510)
T ss_pred Cc
Confidence 54
No 89
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.99 E-value=0.00037 Score=46.71 Aligned_cols=22 Identities=32% Similarity=1.234 Sum_probs=20.5
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008081 193 KVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
.+|.+|..|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.92 E-value=0.0043 Score=55.15 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=64.3
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhc--CCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEEE
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVL 418 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~Fsq--fG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~----Gr~V~ 418 (578)
.||-|.|+ +...|.++|.+++.. .|...-+.+|.| ...|||||.|.+++.|..-.+..+++.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 58999999 788999999988865 577778888887 46999999999999999999999888775 46677
Q ss_pred EeecccCcc
Q 008081 419 VKPYREKSR 427 (578)
Q Consensus 419 Vk~Ak~K~k 427 (578)
|.+|+-.++
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 777764443
No 91
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.86 E-value=0.0028 Score=50.08 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHH
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 404 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al 404 (578)
+.|-|.+. +.+ ..+.+..+|.+||+|+++++.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 46778777 333 4477888999999999999874 6779999999999999985
No 92
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.74 E-value=0.0012 Score=71.39 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=80.8
Q ss_pred cccccccccccCCccHHHHHHHhhhccccccCCCCcchhhhccccccccccC---CCC----CCCCCCCCCCcEEEEcCC
Q 008081 284 GYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYS---GEK----SDPGGIVAGSRQIYLTFP 356 (578)
Q Consensus 284 ~~~~esqR~gk~Gys~~k~l~~lkn~ir~idr~~GQ~~vvl~ed~~K~~~~r---~~r----~d~~~~~~~~rtIyVg~L 356 (578)
.++.+--|.-+.||-.+++++.. .+|+..-|-+.+-+.+|.....-.+... ..| .++....-.+++|.+.+|
T Consensus 161 ~fLlkhvrrnkeGyVpv~~vaSF-KKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenL 239 (484)
T KOG1855|consen 161 AFLLKHVRRNKEGYVPVKLVASF-KKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENL 239 (484)
T ss_pred HHHHHHHhcCCCCceeeehhhhH-HHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecC
Confidence 34444455667899877777766 3555555544443333322221111110 111 122222346899999999
Q ss_pred CCCCCCHHHHHHHhhcCCCeeEEEeec------c-----------CCCceEEEEECCHHHHHHHHHhCCC
Q 008081 357 AESTFTEQDVSNYFSKFGPVQDVRIPC------Q-----------QKRMFGFVTFVFAETVKQILAKGNP 409 (578)
Q Consensus 357 ~~~~~tEedLr~~FsqfG~V~dVrI~~------d-----------ksRGfgFVtF~~~e~A~~Al~~mn~ 409 (578)
+.+-.-+.|.++|+.+|.|..|||.. + +.+-+|+|.|+..+.|.+|.+.|+.
T Consensus 240 -P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 240 -PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred -CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 56666699999999999999999965 1 1266899999999999999999854
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.73 E-value=0.00071 Score=74.92 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.+|+|+-.+ .-..++-+|.++|+.+|+|.+|+|+.| +++|.|||.|.+.+.+..|+.. .|+-+.|..|.|....
T Consensus 179 ~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 468998888 578899999999999999999999997 7899999999999999999955 9999999999998754
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.0014 Score=65.93 Aligned_cols=68 Identities=26% Similarity=0.312 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
...+.|.++ ...+...+|+++|..||+++.+.+ .++++||.|...++|+.|++.+++..+.|+.|.|.
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 457788888 677888999999999999966544 58899999999999999999999999999999993
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.58 E-value=0.0013 Score=68.78 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCcEEE-EcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIY-LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIy-Vg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++| |+++ ++.+++++|+.+|..+|.|..|+++.+ ..+|||+|.|........++.. ..+.+.++.+.+.
T Consensus 182 ~~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 182 GPSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred Cccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 3455677 9999 899999999999999999999999885 7899999999999999999988 8899999999998
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
...++.+.
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 87776554
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.52 E-value=0.0032 Score=56.47 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn 408 (578)
-|.|.++ ...++-++|++.|++||+|..|.+.. .---|+|-|.+++.|+.|++.+.
T Consensus 3 il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 3667777 67788999999999999999998877 55689999999999999999863
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.37 E-value=0.024 Score=60.30 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=69.6
Q ss_pred cccCCCCCCCCCCCCCCcEEEEcCCCC---CCCC-------HHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHH
Q 008081 332 LEYSGEKSDPGGIVAGSRQIYLTFPAE---STFT-------EQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETV 400 (578)
Q Consensus 332 ~~~r~~r~d~~~~~~~~rtIyVg~L~~---~~~t-------EedLr~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A 400 (578)
.+++.++ +........++|.+.|+-. +..+ .++|++--++||+|..|.| +| ...|.+-|+|.+.+.|
T Consensus 250 ~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d~hPdGvvtV~f~n~eeA 327 (382)
T KOG1548|consen 250 LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YDRHPDGVVTVSFRNNEEA 327 (382)
T ss_pred cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-eccCCCceeEEEeCChHHH
Confidence 4445555 3334456678999988721 1233 4566777899999999954 54 5789999999999999
Q ss_pred HHHHHhCCCceEcCeEEEEeecccC
Q 008081 401 KQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 401 ~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
..+++.|+|.+++||.|....+-.+
T Consensus 328 ~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 328 DQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999999998765444
No 98
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.36 E-value=0.017 Score=51.70 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=51.2
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEE-------------eeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe-
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-------------IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA- 415 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVr-------------I~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr- 415 (578)
-|.|=+.++ -....|-++|++||.|.+.. ++. ...+--|+|+++.+|++||.+ ||..|.|.
T Consensus 8 wVtVFGfp~--~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 8 WVTVFGFPP--SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp EEEEE---G--GGHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred EEEEEccCH--HHHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 355555523 26688999999999999885 343 678999999999999999999 99999885
Q ss_pred EEEEeecc
Q 008081 416 RVLVKPYR 423 (578)
Q Consensus 416 ~V~Vk~Ak 423 (578)
.|-|++..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55577764
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.36 E-value=0.0051 Score=68.57 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...+|||++| +..+++..+++....||++...+++.| .++||||-.|.+......|++.+|+..+.++++.|..|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4579999999 789999999999999999999999886 68999999999999999999999999999999999988
Q ss_pred ccCccc
Q 008081 423 REKSRL 428 (578)
Q Consensus 423 k~K~k~ 428 (578)
......
T Consensus 367 ~~g~~~ 372 (500)
T KOG0120|consen 367 IVGASN 372 (500)
T ss_pred hccchh
Confidence 765443
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.34 E-value=0.011 Score=65.16 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d-VrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
....|=+.+| ++.+||+||.+||+--=.|.+ |.++.| ++-|=|||.|++.|.|++||.. +...|..|=|.|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3457888999 899999999999997755555 334554 7789999999999999999999 899999999999765
Q ss_pred c
Q 008081 423 R 423 (578)
Q Consensus 423 k 423 (578)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.28 E-value=0.015 Score=50.64 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=46.1
Q ss_pred cEEEEcCCCCCCCCHHHHHH----HhhcC-CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 349 RQIYLTFPAESTFTEQDVSN----YFSKF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~----~Fsqf-G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..|||.|| +.+.+-..|+. ++.-+ |.|.+| ..+-|+|.|.+.+.|.+|.+.|++-.+-|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999 66666665554 44455 588887 57899999999999999999999999999999999864
Q ss_pred c
Q 008081 424 E 424 (578)
Q Consensus 424 ~ 424 (578)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.18 E-value=0.012 Score=65.64 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 364 QDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 364 edLr~~FsqfG~V~dVrI~~d-------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
|+|+.-+++||.|..|.|+++ -.-|--||.|.+.+++++|.+.|+|..+.||.|...+|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 456667889999999999885 3567789999999999999999999999999988887654
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.97 E-value=0.016 Score=61.32 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCCCCCHH---HH--HHHhhcCCCeeEEEeecc-----CCCc-e-EEEEECCHHHHHHHHHhCCCceEcC
Q 008081 347 GSRQIYLTFPAESTFTEQ---DV--SNYFSKFGPVQDVRIPCQ-----QKRM-F-GFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEe---dL--r~~FsqfG~V~dVrI~~d-----ksRG-f-gFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
...-+||-+|++.-..|+ -| .+||++||.|..|-|-+. ---+ + .||||...|+|.+++.+.++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999955555555 23 489999999999977552 0112 2 3999999999999999999999999
Q ss_pred eEEEEeecccC
Q 008081 415 ARVLVKPYREK 425 (578)
Q Consensus 415 r~V~Vk~Ak~K 425 (578)
|.|+..+...|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99988765433
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.95 E-value=0.028 Score=56.66 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEeec
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~-Gr~V~Vk~A 422 (578)
..++...+|+.++ +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...|..|...+.+..|- ...+.|..+
T Consensus 142 ~~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 4577889999999 788999999999999999999998763 6789999999999999999988777664 777777765
Q ss_pred c
Q 008081 423 R 423 (578)
Q Consensus 423 k 423 (578)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 4
No 105
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.94 E-value=0.0039 Score=39.53 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=17.0
Q ss_pred cccccccccCCCCCCCccCCC
Q 008081 194 VCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 194 pC~YFarG~Ck~G~sCrF~Hg 214 (578)
||+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998877 999999999993
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.03 Score=62.10 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE----cC
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV----CG 414 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~Fs-qfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I----~G 414 (578)
.....+|||||+| +.-++.++|-.+|. -||-|.-|-|=.| ..+|-|=|||.+..+--+||++ --..| -.
T Consensus 366 ~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~~ 443 (520)
T KOG0129|consen 366 PIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDID 443 (520)
T ss_pred ccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEeccccc
Confidence 3456789999999 78899999999999 7999999988776 4699999999999999999997 33333 24
Q ss_pred eEEEEeecc-cCc
Q 008081 415 ARVLVKPYR-EKS 426 (578)
Q Consensus 415 r~V~Vk~Ak-~K~ 426 (578)
++|.|++|. +..
T Consensus 444 KRVEIkPYv~eDq 456 (520)
T KOG0129|consen 444 KRVEIKPYVMEDQ 456 (520)
T ss_pred eeeeecceecccc
Confidence 689999887 443
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.02 Score=63.45 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCc---eEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRM---FGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-------ksRG---fgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
.-+++||||+| +++++|+.|...|.+||.+. |..+.. ..+| |+|+.|+++..+++.+.. ...+..
T Consensus 257 ~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEGEG 331 (520)
T ss_pred ccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhccc
Confidence 44789999999 89999999999999999864 444421 4567 999999999999988776 222444
Q ss_pred EEEEeecc
Q 008081 416 RVLVKPYR 423 (578)
Q Consensus 416 ~V~Vk~Ak 423 (578)
...++...
T Consensus 332 ~~yf~vss 339 (520)
T KOG0129|consen 332 NYYFKVSS 339 (520)
T ss_pred ceEEEEec
Confidence 44444433
No 108
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.67 E-value=0.0043 Score=66.87 Aligned_cols=27 Identities=41% Similarity=1.045 Sum_probs=24.8
Q ss_pred CcccccccccccCCCCCCCccCCCCCC
Q 008081 191 PVKVCHYFNKGFCKHGNNCRYFHGHPM 217 (578)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrF~Hg~~~ 217 (578)
..|||.||-.|.|+.|.+|||.||..+
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hhccchHhhccccccCcccccccCccc
Confidence 589999999999999999999999544
No 109
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.60 E-value=0.015 Score=62.02 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d--------VrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I 412 (578)
....-+|||-++ +..+++.++.++|.+.|.|.. |.|-+| +.||=|-|+|+++..|+.|++-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 455679999999 788999999999999998753 223223 6899999999999999999999999999
Q ss_pred cCeEEEEeecccCccc
Q 008081 413 CGARVLVKPYREKSRL 428 (578)
Q Consensus 413 ~Gr~V~Vk~Ak~K~k~ 428 (578)
+|..|+|..|..+..+
T Consensus 142 ~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGV 157 (351)
T ss_pred cCCCchhhhhhhccCc
Confidence 9999999988877643
No 110
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.40 E-value=0.016 Score=47.89 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=38.8
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008081 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (578)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (578)
.-+|.+|++++|+.|.||-|+||= .+..|++.| +..+.+|.+-|.+|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 358999999999999999999985 455777777 455666667777765433
No 111
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.38 E-value=0.01 Score=50.09 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHH
Q 008081 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60 (578)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~ 60 (578)
..+|.+|++++|++|.||-|+||= .+..|++.|=-.| .+|+.-|.+|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 468999999999999999999984 5677888886554 6777888877653
No 112
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.16 E-value=0.022 Score=57.63 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I 412 (578)
....||||.|| ..++||++|+..|+.|--...++|--....-.|||.|++.+.|..|+..+.|..|
T Consensus 208 ~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44669999999 8899999999999999877777775433445799999999999999888766555
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.11 E-value=0.072 Score=50.73 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCCCCCCcEEEEcCCC-----CCCCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc
Q 008081 342 GGIVAGSRQIYLTFPA-----ESTFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (578)
Q Consensus 342 ~~~~~~~rtIyVg~L~-----~~~~tE---edLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~ 413 (578)
+..+|+..||.|.-.. ...+.+ .+|-+.|.+||+|.=||.+- +-=+|||.+-+.|-+|++. ++..|+
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~ 95 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVN 95 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEET
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEEC
Confidence 4667889999987772 123443 36778899999999998875 4579999999999999998 999999
Q ss_pred CeEEEEeeccc
Q 008081 414 GARVLVKPYRE 424 (578)
Q Consensus 414 Gr~V~Vk~Ak~ 424 (578)
|+.|+|+.-.+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999986443
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.76 E-value=0.12 Score=55.68 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
+...-+.|-+|....++-+.|-++|..||.|+.|+.++ -+-|-|.|+..+...+++|+..||+..+-|.+|.|+..+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 44568889999557788899999999999999999987 36789999999999999999999999999999999987644
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.63 E-value=0.026 Score=60.00 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=61.6
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG--~V~dVrI~~----dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.+||||| -|.+|++||.+....-| .+.+++... +++||||.|...+...+++.++.+....|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 6899999 89999999999988777 344444433 3899999999999999999999999999999887776654
Q ss_pred c
Q 008081 424 E 424 (578)
Q Consensus 424 ~ 424 (578)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.042 Score=61.56 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=57.5
Q ss_pred cEEEEcCCCCCCCCH-------HHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEE
Q 008081 349 RQIYLTFPAESTFTE-------QDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARV 417 (578)
Q Consensus 349 rtIyVg~L~~~~~tE-------edLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~-Gr~V 417 (578)
.-|+|.|+| -+-+ .-|.+.|+++|+|+.+.+|.+ ..+||.|+.|.+...|+.|++.+||+.|+ +.+.
T Consensus 59 ~vVvv~g~P--vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAP--VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCc--ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467777772 2333 335678999999999999975 78999999999999999999999998874 5667
Q ss_pred EEeecc
Q 008081 418 LVKPYR 423 (578)
Q Consensus 418 ~Vk~Ak 423 (578)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 775443
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.53 E-value=0.021 Score=58.61 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec-c--------CCCc-------eEEEEECCHHHHHHHHHhCCCc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q--------QKRM-------FGFVTFVFAETVKQILAKGNPH 410 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~-d--------ksRG-------fgFVtF~~~e~A~~Al~~mn~~ 410 (578)
...-||++++ +..+.-..||++|++||.|=.|.+.. + +.+| =|+|.|.+-..|+++.+.||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3457999999 78899999999999999999999866 2 1111 2899999999999999999999
Q ss_pred eEcCeE
Q 008081 411 FVCGAR 416 (578)
Q Consensus 411 ~I~Gr~ 416 (578)
.|+|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 118
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.14 E-value=0.021 Score=58.48 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHhh-cCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 364 QDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 364 edLr~~Fs-qfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
|||-..|+ +||+|+++.|-.. .-+|=.+|.|..+++|++|++.+|+-++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555556 9999999977653 56899999999999999999999999999999998764
No 119
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.85 E-value=0.026 Score=59.42 Aligned_cols=27 Identities=48% Similarity=1.249 Sum_probs=25.0
Q ss_pred CCCCccccccccc-ccCCCCCCCccCCC
Q 008081 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (578)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~G~sCrF~Hg 214 (578)
....-++|.+|.+ |+||.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 4667899999999 99999999999999
No 120
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.69 E-value=0.15 Score=55.53 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEeecc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYR 423 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr-~V~Vk~Ak 423 (578)
.|++.+|.+.++ +.+++||+|++.|.+-|-+.+...-.++.|-++.+.+.+.|.|-.|+..+..|.+++. -++|.+.+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 477789999999 7899999999999999988877776667888999999999999999999999998765 78887765
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.59 E-value=0.079 Score=60.73 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeec---cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d-VrI~~---dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
......|||..| +..+++.++-++|..--.|++ |.|.+ ++-++-|||.|..++.+.+|+.....+.++.|.|+|.
T Consensus 431 ~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345679999999 889999999999999888888 66655 5889999999999888888888778899999999997
Q ss_pred ecccC
Q 008081 421 PYREK 425 (578)
Q Consensus 421 ~Ak~K 425 (578)
...++
T Consensus 510 si~~~ 514 (944)
T KOG4307|consen 510 SIADY 514 (944)
T ss_pred chhhH
Confidence 65544
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.35 E-value=0.16 Score=59.72 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEee
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKP 421 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G--r~V~Vk~ 421 (578)
....++.++||+| .....-..|...|..||+|..|.+-. .--|++|.|++...++.|+..|.+.-|+| +++.|.+
T Consensus 451 kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3455789999999 56678899999999999999976643 67799999999999999999999998876 7899999
Q ss_pred cccCccchhh
Q 008081 422 YREKSRLVDR 431 (578)
Q Consensus 422 Ak~K~k~~~r 431 (578)
|.+....+.+
T Consensus 528 a~~~~~~Pqq 537 (975)
T KOG0112|consen 528 ASPPGATPQQ 537 (975)
T ss_pred ccCCCCChhh
Confidence 9887766654
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.05 E-value=0.23 Score=52.11 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 363 EQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 363 EedLr~~FsqfG~V~dVrI~~d-----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
|+++++..++||.|..|-|... .-----||.|...+.|-+|+-.|||.+|+||.|...+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678888999999999976553 1122379999999999999999999999999999888753
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.14 E-value=1.3 Score=36.42 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcC----CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKF----GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~Fsqf----G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~m 407 (578)
..+|+|.|+ .+++.+|++.||..| + ...|..+-|.+ +=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCC-CceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 458999999 578999999999999 4 44666665533 567899999999999864
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=90.11 E-value=0.27 Score=53.81 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=62.1
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-ceEcCeEEEEeecccCcc
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPYREKSR 427 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~-~~I~Gr~V~Vk~Ak~K~k 427 (578)
.++|+||| ...++..||+..|...---..=.++ -+-||+||.+.+..-|.+|++.+++ ..+.|.++.|....+|..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 47899999 8889999999999754100000111 2689999999999999999999876 578999999998888766
Q ss_pred chhh
Q 008081 428 LVDR 431 (578)
Q Consensus 428 ~~~r 431 (578)
+..+
T Consensus 79 rsrk 82 (584)
T KOG2193|consen 79 RSRK 82 (584)
T ss_pred Hhhh
Confidence 5544
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=90.06 E-value=0.86 Score=52.67 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=61.8
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCee-EEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~-dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.+-|-+.|. +++++=+||-+||+-|-.+- +|+|-+. ..-|=+-|.|++.+.|.+|...+++..|.+|.|++.
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 457788888 89999999999999998766 4555442 567889999999999999999999999999999875
No 127
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.80 E-value=0.28 Score=51.20 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.5
Q ss_pred CCCCcEEEEcCCCC-C----------CCCHHHHHHHhhcCCCeeEEEeec
Q 008081 345 VAGSRQIYLTFPAE-S----------TFTEQDVSNYFSKFGPVQDVRIPC 383 (578)
Q Consensus 345 ~~~~rtIyVg~L~~-~----------~~tEedLr~~FsqfG~V~dVrI~~ 383 (578)
+....|||+.++|- | --+|+.|+..|..||.|..|.||.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34466899988842 1 146889999999999999999976
No 128
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.12 E-value=1.1 Score=44.30 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=47.8
Q ss_pred CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEeecccC
Q 008081 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPYREK 425 (578)
Q Consensus 362 tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn--~~~I~Gr~V~Vk~Ak~K 425 (578)
..+.|+++|..|+++....+.. +-+=..|.|.+.+.|.+|...++ +..+.|..++|.++..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999999887776 66678999999999999999998 89999999999988543
No 129
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=0.17 Score=54.50 Aligned_cols=22 Identities=45% Similarity=1.147 Sum_probs=21.3
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008081 193 KVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
.+|+||.+|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999997
No 130
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=88.11 E-value=1.7 Score=47.17 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=61.0
Q ss_pred CcEEEEcCCC-CCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEeeccc
Q 008081 348 SRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYRE 424 (578)
Q Consensus 348 ~rtIyVg~L~-~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G--r~V~Vk~Ak~ 424 (578)
++-|.++-|+ -+.+|.+-|-.+-...|+|..|-|.+ +.---|.|+|++.+.|++|.+.||+..|.. ..++|.+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 4444444442 47899999999999999999998887 233359999999999999999999988743 5678888876
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 4
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.63 E-value=0.07 Score=62.30 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~----dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.++||.+| +..+.+++|+..|+.+|.|..|+|.. ++-||+|+|.|..++.+.+|+...+.+.++...|-|.-
T Consensus 668 ~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 668 IKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 38999999 88999999999999999999988762 47899999999999999999999777777654444443
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.59 E-value=2.1 Score=41.02 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=56.5
Q ss_pred CCCCCcEEEEcCCCCCCC-CHHHHHH---HhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTF-TEQDVSN---YFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~-tEedLr~---~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..++..||.|.-| ...+ ..+|++. ..+.||+|.+|.+. .|.-|.|+|.+..+|=+|+.+... ..-|..+.+
T Consensus 82 kepPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 4577889999887 3332 3355554 56789999999765 688899999999999999998543 566777887
Q ss_pred eec
Q 008081 420 KPY 422 (578)
Q Consensus 420 k~A 422 (578)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 774
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.38 E-value=0.95 Score=49.26 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=58.2
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec--c-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC--Q-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~--d-----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.-|-|.|| ...+|.+++..+|+-.|+|.+++|.. | -..-.+||.|.+...+..|--..|-++ -++-+.|-+
T Consensus 8 ~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvf-vdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVF-VDRALIVRP 85 (479)
T ss_pred ceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcccee-eeeeEEEEe
Confidence 37999999 78899999999999999999999866 2 234489999999999887766544444 456666766
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
|..
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 654
No 134
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.34 E-value=1.3 Score=46.95 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=52.2
Q ss_pred CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEeecccCcc
Q 008081 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYREKSR 427 (578)
Q Consensus 362 tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr-~V~Vk~Ak~K~k 427 (578)
.-.-|-.+|++||+|+++... +.-.+=.|.|.+.-.|++||.+ |+.+|+|. .|-|+++..|..
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 456888999999999998655 3677999999999999999999 99999885 456777766543
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.00 E-value=0.14 Score=60.11 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.-.++|||+|++ +..+++.+++..|..+|.|.+|.|-.- +---||||.|.+...+-.|+..+-+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 455789999999 899999999999999999999988442 3345999999999999999999888777666666665
Q ss_pred cccC
Q 008081 422 YREK 425 (578)
Q Consensus 422 Ak~K 425 (578)
..++
T Consensus 448 G~~k 451 (975)
T KOG0112|consen 448 GQPK 451 (975)
T ss_pred cccc
Confidence 5443
No 136
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=86.54 E-value=0.44 Score=53.54 Aligned_cols=35 Identities=37% Similarity=0.863 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCcccccccccccCCCCCCCccCCC
Q 008081 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 180 ~~rrs~s~~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
..||.+.-.--..-||-=|.||.|++|.+|.|.||
T Consensus 224 ARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 224 ARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCCcccccccCccCcccccCCCCCCCccccccc
Confidence 34666665566778999999999999999999999
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=86.19 E-value=1.1 Score=48.61 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=52.6
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcC----CCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKF----GPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~Fsqf----G~V~dVrI~~---dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
-|-..+| +++.++.|+.+||..- |-++.|-.+. ++.-|=|||.|..+++|++||.+ +...|+-|-|.+.+
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 3445789 8999999999999732 2333443333 37889999999999999999999 77777777665543
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=85.98 E-value=0.36 Score=56.60 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~---dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
..+++|.|+ ++.-|.+.++..++.+|.+.+++++. ++.+|.|||.|.++.++.+++..++...+.-+.+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999 89999999999999999999999877 37899999999999999999999888888777777765444
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.77 E-value=0.31 Score=51.91 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCCCHHHHH--HHhhcCCCeeEEEeeccC----C---CceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 349 RQIYLTFPAESTFTEQDVS--NYFSKFGPVQDVRIPCQQ----K---RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr--~~FsqfG~V~dVrI~~dk----s---RGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
+.+||-+|+.....|..|+ +||++||.|..|.+-.+. + --=++|||...++|..+|...++...+|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4678888844445555555 689999999999887642 1 112899999999999999999999999998766
Q ss_pred eecccC
Q 008081 420 KPYREK 425 (578)
Q Consensus 420 k~Ak~K 425 (578)
.....|
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 655544
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=85.66 E-value=0.95 Score=51.51 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhh-cCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE---cCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~Fs-qfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I---~Gr~V~V 419 (578)
.++.++-|||.|| -.-||.-+|+.+.+ ..|.|++..| |+-+--+||+|.+.+.|-+...+|++..+ +++.|.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4566889999999 67899999999999 6778888744 44666799999999999999999988876 6677777
Q ss_pred eecc
Q 008081 420 KPYR 423 (578)
Q Consensus 420 k~Ak 423 (578)
.+..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6654
No 141
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=85.40 E-value=3.7 Score=40.92 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=57.3
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE--cCeEEEEeec
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKPY 422 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I--~Gr~V~Vk~A 422 (578)
.+.|.+| +..-+=.||+++..+-|.|....+.+ -|+|.|.|...|+++-|+.+++...+ .|....+...
T Consensus 117 RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 117 RVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 8999999 67778899999999999998888765 57999999999999999999877665 4555555443
No 142
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=83.02 E-value=0.63 Score=31.17 Aligned_cols=19 Identities=32% Similarity=0.952 Sum_probs=17.1
Q ss_pred cccccccc-cCCCCCCCccCC
Q 008081 194 VCHYFNKG-FCKHGNNCRYFH 213 (578)
Q Consensus 194 pC~YFarG-~Ck~G~sCrF~H 213 (578)
.|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999998 9987 8999988
No 143
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=82.31 E-value=1.8 Score=35.44 Aligned_cols=68 Identities=32% Similarity=0.554 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhhcCCC--CccccccchhHHHhhccccccccccccccccccCCc-cHHHHHHHhhhccccccCCCCc
Q 008081 243 SLERLEAEITELLKQRRGF--PISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRPHGQ 319 (578)
Q Consensus 243 sle~le~ei~ell~~r~~~--p~~~~~lp~~y~ek~G~~l~~~~~~~esqR~gk~Gy-s~~k~l~~lkn~ir~idr~~GQ 319 (578)
+++.+..+|.+++.+.++. .+....++..|...| ..+..+. -|| +|..++..+++.+.+.++.+|+
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~~----------yG~~~l~~ll~~~~~~~~i~~~~~g~ 70 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPRD----------YGFSSLSELLESLPDVVEIEERQHGG 70 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TCC----------TTSSSHHHHHHT-TTTEEEEEEECCC
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCccc----------cCCCcHHHHHHhCCCeEEEeeeCCCC
Confidence 4577888999999776643 677778888888777 5554332 266 6888887788888887887776
Q ss_pred ch
Q 008081 320 HS 321 (578)
Q Consensus 320 ~~ 321 (578)
+.
T Consensus 71 ~~ 72 (74)
T PF12872_consen 71 QV 72 (74)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 144
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=81.72 E-value=1.7 Score=47.30 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCee-E--EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-D--VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~-d--VrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...|-+.+| +++.+-||+-+||..|-.-+ - |.|+.. +.-|=|||.|.+.|.|.+|..+-..+....|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457888999 89999999999999987433 2 677663 7789999999999999999999777777799999987
Q ss_pred cc
Q 008081 422 YR 423 (578)
Q Consensus 422 Ak 423 (578)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 145
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=80.86 E-value=1.4 Score=45.64 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCC----CceEcCeEEEEee
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGN----PHFVCGARVLVKP 421 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn----~~~I~Gr~V~Vk~ 421 (578)
.-|||.|| ...++.+.+...|+.||+|+..-+..| +.-+=++|.|...-.|.+|+.... +...+++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999 788999999999999999997755554 667789999999999999988753 2445778887765
Q ss_pred cc
Q 008081 422 YR 423 (578)
Q Consensus 422 Ak 423 (578)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 146
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=79.06 E-value=2 Score=49.56 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=75.9
Q ss_pred ccCCCCcchhhhccccccccccCCCCCCCCCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEE
Q 008081 313 IDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFV 392 (578)
Q Consensus 313 idr~~GQ~~vvl~ed~~K~~~~r~~r~d~~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFV 392 (578)
...|.-++..|++..++ |. ..--.+....+...++|||++ ...+..+-++......|-|..+.... |||.
T Consensus 9 a~~P~~~~~~~~~~~~p-~~---~p~qp~~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~ 78 (668)
T KOG2253|consen 9 AGMPMMPQVPMVGNGVP-YV---VPIQPVFQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFC 78 (668)
T ss_pred CCCCCCCCCccccCCcc-cc---cCCcccccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hccc
Confidence 34455555556665555 22 222233445566779999999 77888888899999999998886654 9999
Q ss_pred EECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 393 TFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 393 tF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
.|........|+..+....++|..+.++.-
T Consensus 79 ~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 79 EFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred chhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 999999999999999999999998888763
No 147
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=78.23 E-value=0.76 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCC-CccCCC
Q 008081 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~s-CrF~Hg 214 (578)
.-+|.=|.||.|+||.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 57899999999999988 999996
No 148
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=78.17 E-value=8.8 Score=33.73 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP 409 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~ 409 (578)
..+-.||+++ .+....||.+.|+.||.|.=-.| .-.-|||.....+.|+.|+..+..
T Consensus 8 RdHVFhltFP--keWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE----TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3557889987 45678999999999999865544 456799999999999999888643
No 149
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.92 E-value=5.9 Score=33.07 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhhcCCC-----eeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 359 STFTEQDVSNYFSKFGP-----VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 359 ~~~tEedLr~~FsqfG~-----V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++..+|-.++..-+. |-+|+| ...|.||.-. .+.|+.+++.+++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 56788899999987654 456666 4569999854 56889999999999999999999875
No 150
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=74.99 E-value=1.2 Score=47.00 Aligned_cols=21 Identities=38% Similarity=1.225 Sum_probs=20.3
Q ss_pred cccccccccCCCCCCCccCCC
Q 008081 194 VCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 194 pC~YFarG~Ck~G~sCrF~Hg 214 (578)
.|-||-.|.|+.|..|+|.|+
T Consensus 94 vCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHhccCCCCCCcccccch
Confidence 699999999999999999998
No 151
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=74.89 E-value=1.5 Score=47.04 Aligned_cols=22 Identities=41% Similarity=1.239 Sum_probs=12.2
Q ss_pred cccccccc-ccCCCCCCCccCCC
Q 008081 193 KVCHYFNK-GFCKHGNNCRYFHG 214 (578)
Q Consensus 193 kpC~YFar-G~Ck~G~sCrF~Hg 214 (578)
++|.||.. |.|.+|..|.|.|+
T Consensus 106 rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 106 RECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred ccccccccccccccccCCcccCC
Confidence 45555544 55555555555555
No 152
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=72.69 E-value=1.7 Score=45.77 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=21.7
Q ss_pred ccccccc-ccccCCCCCCCccCCCC
Q 008081 192 VKVCHYF-NKGFCKHGNNCRYFHGH 215 (578)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrF~Hg~ 215 (578)
.-||.|| .+|.|+.|+.|.|.|..
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 5689999 88999999999999983
No 153
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=63.73 E-value=3.3 Score=43.70 Aligned_cols=27 Identities=41% Similarity=1.024 Sum_probs=23.5
Q ss_pred CCCCccccccccc-ccCCC-CCCCccCCC
Q 008081 188 PEFPVKVCHYFNK-GFCKH-GNNCRYFHG 214 (578)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~-G~sCrF~Hg 214 (578)
..+.-..|.+|.+ |.|+. |.+|+|.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 4566788999877 99999 999999888
No 154
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=61.58 E-value=8 Score=37.85 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhc-CCCe---eEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSK-FGPV---QDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~Fsq-fG~V---~dVrI~~d------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
..+|.|.+| +..+||+++++..+. +|.. ..+.-..+ ..-.-|+|.|.+.+++..-...++++.+.+
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 459999999 789999999997776 6666 23321111 122349999999999999999999977744
No 155
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=61.17 E-value=3.6 Score=44.22 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=23.6
Q ss_pred CCCcccccccccccCCCCCCCccCCC
Q 008081 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
..+-..|+||.+|.|+.|..|-|.|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 45678999999999999999999986
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=60.49 E-value=4.9 Score=42.32 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~----dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....+.|+|.+ .+.+.+.+...+|..+|.+.++.+.. +.++|++.|.|...+.+..++...-...+.++.+..-.
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 34679999999 78887888899999999988887766 27899999999999999999998544566666655544
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
...
T Consensus 165 ~~~ 167 (285)
T KOG4210|consen 165 NTR 167 (285)
T ss_pred ccc
Confidence 333
No 157
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=58.89 E-value=4 Score=41.54 Aligned_cols=22 Identities=36% Similarity=1.118 Sum_probs=19.1
Q ss_pred cccccc-ccccCCCCCCCccCCC
Q 008081 193 KVCHYF-NKGFCKHGNNCRYFHG 214 (578)
Q Consensus 193 kpC~YF-arG~Ck~G~sCrF~Hg 214 (578)
--|.|+ +.|.|..|..|||+|.
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 458887 5699999999999997
No 158
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=49.26 E-value=6.8 Score=39.40 Aligned_cols=24 Identities=29% Similarity=1.031 Sum_probs=19.1
Q ss_pred Cccccccc-ccccCCCCCCCccCCC
Q 008081 191 PVKVCHYF-NKGFCKHGNNCRYFHG 214 (578)
Q Consensus 191 ~~kpC~YF-arG~Ck~G~sCrF~Hg 214 (578)
---.|.=| ..|||--|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 34467755 4599999999999997
No 159
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=48.86 E-value=1.1e+02 Score=27.89 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=49.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
...+-+..+ ++-++-++|..+.+.+- .|..+||++| ..|=.+.+.|.+.+.|+.=....||..++.
T Consensus 13 ~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344445555 66677778876666554 5778899997 456578899999999999999999887644
No 160
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=44.85 E-value=11 Score=39.88 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=22.9
Q ss_pred CCcccccccccccCCCCCCCccCCC
Q 008081 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
-+--+|++|-+|-|+.|..|.|+|+
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred cCCcccchhccccCcCCCccccccC
Confidence 3566899999999999999999999
No 161
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=44.33 E-value=11 Score=40.56 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=24.0
Q ss_pred CCCCCCCCcccccccccccCCCCCCCccCCC
Q 008081 184 SPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 184 s~s~~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
+.-++....-=|+=|.+|.|.| .+|||+|.
T Consensus 63 ~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 63 NCQVSNGRVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred CCCccCCeEEEEeccccCccCc-ccceecCC
Confidence 3344566677899999999999 55999998
No 162
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=40.66 E-value=10 Score=38.63 Aligned_cols=23 Identities=48% Similarity=1.096 Sum_probs=19.7
Q ss_pred cccccccccccCCCCCCCccCCCC
Q 008081 192 VKVCHYFNKGFCKHGNNCRYFHGH 215 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrF~Hg~ 215 (578)
..-|.||--|.|.+ -+|||+|=+
T Consensus 261 ipacryfllgkcnn-pncryvhih 283 (377)
T KOG1492|consen 261 IPACRYFLLGKCNN-PNCRYVHIH 283 (377)
T ss_pred cchhhhhhhccCCC-CCceEEEEe
Confidence 34599999999998 889999963
No 163
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=40.35 E-value=54 Score=37.76 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=48.1
Q ss_pred CcEEE-EcCCCCCCCCHHHHHHHhhc--CCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEE
Q 008081 348 SRQIY-LTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVL 418 (578)
Q Consensus 348 ~rtIy-Vg~L~~~~~tEedLr~~Fsq--fG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn--~~~I~Gr~V~ 418 (578)
.|+|. +.-| +.++-+|+|+.+|.- +-++.+|..-. ---.||||++..+|+.|++.+. -..|.|+.|.
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~---N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAH---NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee---cCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34444 4567 678889999999974 66788887654 3347999999999999988752 2445555443
No 164
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=39.60 E-value=22 Score=42.59 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCce--EcCeEEEEee
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHF--VCGARVLVKP 421 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~--I~Gr~V~Vk~ 421 (578)
.-|...+.++.+. .-..+..-|-..|++||.|.+.+..+ .-..|.|.|...+.|-.|++.+.|.. .-|-..+|-.
T Consensus 294 v~plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 294 VFPLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred cccCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 3455567777776 56778899999999999999999887 45569999999999999999987754 4677888887
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
|+.
T Consensus 371 ak~ 373 (1007)
T KOG4574|consen 371 AKT 373 (1007)
T ss_pred ccc
Confidence 764
No 165
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=38.27 E-value=6.3 Score=40.28 Aligned_cols=70 Identities=29% Similarity=0.357 Sum_probs=54.8
Q ss_pred CcEEEEcC----CCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 348 SRQIYLTF----PAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 348 ~rtIyVg~----L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
..|++-|+ | +..++++.+...|++-|+|+.+|+..+ +.|-++||++.....+-.++....+...--+++.
T Consensus 80 q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 80 QRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 34566666 6 678999999999999999999999985 6899999999888888888877544444333333
No 166
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=37.82 E-value=17 Score=38.87 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=23.6
Q ss_pred CCCccccccccc-ccCCCCCCCccCCC
Q 008081 189 EFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (578)
Q Consensus 189 ~~~~kpC~YFar-G~Ck~G~sCrF~Hg 214 (578)
.|.-+||.-+.+ |||.-|.-|.|.||
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred ccccCCccchhhcccCccccccccccC
Confidence 556699999887 99999999999999
No 167
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.52 E-value=1.1e+02 Score=35.63 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=58.1
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHhhcC----CCeeEEEeec---c----------CC--------------------
Q 008081 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKF----GPVQDVRIPC---Q----------QK-------------------- 386 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~tEedLr~~Fsqf----G~V~dVrI~~---d----------ks-------------------- 386 (578)
+..++.|-|-|+ +| .+..+||--.|+.| |.|.+|.|.. + ..
T Consensus 171 ~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456889999999 87 57789999998866 5899998754 1 00
Q ss_pred ---------C---------ceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 387 ---------R---------MFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 387 ---------R---------GfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
| =||.|+|++.++|.++++..+|..+...-..+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1 27999999999999999999999886654443
No 168
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=33.72 E-value=16 Score=37.77 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=20.5
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008081 193 KVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
-.|-.|.-|.|..|..|+|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3699999999999999999999
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.05 E-value=64 Score=26.81 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCeeEEEee
Q 008081 364 QDVSNYFSKFGPVQDVRIP 382 (578)
Q Consensus 364 edLr~~FsqfG~V~dVrI~ 382 (578)
.+||++|++.|+|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999988773
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=30.70 E-value=1.3e+02 Score=34.05 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=56.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
+..|+|-.+ +-.+|-.||-.|...|= .|.+++|++| ..|=...|+|.+.++|..-++..||..++.
T Consensus 74 ~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999998 67789999999988764 6889999997 456568999999999999999999987644
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=27.53 E-value=28 Score=36.26 Aligned_cols=27 Identities=26% Similarity=0.787 Sum_probs=23.8
Q ss_pred CCCCcccccccccccCCCCCCCccCCC
Q 008081 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
..+--.+|-.|-++.|.+|..|-|.|-
T Consensus 148 T~~rea~C~~~e~~~C~rG~~CnFmH~ 174 (260)
T KOG2202|consen 148 TDFREAICGQFERTECSRGGACNFMHV 174 (260)
T ss_pred CchhhhhhcccccccCCCCCcCcchhh
Confidence 455567999999999999999999996
No 172
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.49 E-value=41 Score=38.27 Aligned_cols=22 Identities=41% Similarity=1.026 Sum_probs=17.4
Q ss_pred cccc-ccccCCCCCCCccCCCCC
Q 008081 195 CHYF-NKGFCKHGNNCRYFHGHP 216 (578)
Q Consensus 195 C~YF-arG~Ck~G~sCrF~Hg~~ 216 (578)
|-+| +.|+|..|-+|||+-++.
T Consensus 117 Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 117 CPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred cceeeccccCCccceeehhhccc
Confidence 5555 669999999999976643
No 173
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.28 E-value=1.1e+02 Score=35.34 Aligned_cols=77 Identities=9% Similarity=0.053 Sum_probs=50.2
Q ss_pred EEEEcCCCCCCCCHHHHHHHh-hcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEEEEe
Q 008081 350 QIYLTFPAESTFTEQDVSNYF-SKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVLVK 420 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~F-sqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~----Gr~V~Vk 420 (578)
++-|.++ +...|-.-|.++- ...|.=.-++++.| ...|||||.|..++.+..+.++.++..++ .+.+.+.
T Consensus 390 t~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 390 TLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 4555565 3334444444432 23677777788887 46899999999999999999998886542 2344455
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
+|+-.++
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 5554443
No 174
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.41 E-value=37 Score=36.90 Aligned_cols=26 Identities=42% Similarity=0.930 Sum_probs=23.6
Q ss_pred CCCccccccccc--ccCCCCCCCccCCC
Q 008081 189 EFPVKVCHYFNK--GFCKHGNNCRYFHG 214 (578)
Q Consensus 189 ~~~~kpC~YFar--G~Ck~G~sCrF~Hg 214 (578)
+.+.|.|.||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 567899999987 89999999999996
No 175
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=34 Score=36.41 Aligned_cols=26 Identities=23% Similarity=1.048 Sum_probs=20.3
Q ss_pred CCCccccccc-ccccCCCCCCCccCCC
Q 008081 189 EFPVKVCHYF-NKGFCKHGNNCRYFHG 214 (578)
Q Consensus 189 ~~~~kpC~YF-arG~Ck~G~sCrF~Hg 214 (578)
.+..-+|+=| --|||..|-+|+|+|-
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhh
Confidence 3445578755 4599999999999996
No 176
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.95 E-value=1.2e+02 Score=26.69 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=23.2
Q ss_pred EEEEECCHHHHHHHHHhCC-CceEcCeEEE--Eeecc
Q 008081 390 GFVTFVFAETVKQILAKGN-PHFVCGARVL--VKPYR 423 (578)
Q Consensus 390 gFVtF~~~e~A~~Al~~mn-~~~I~Gr~V~--Vk~Ak 423 (578)
|.|||.+++.|+..+.... ...+++..+. |.++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~ 37 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVT 37 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEe
Confidence 6899999999999998842 2344555444 44443
No 177
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.65 E-value=85 Score=32.78 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=24.5
Q ss_pred EEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 390 GFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 390 gFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
|||||++..+|+.|++....+ .++.+.|..|-+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCc
Confidence 799999999999999964322 2355577666544
Done!