Query 008081
Match_columns 578
No_of_seqs 341 out of 1711
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 2.4E-24 8.1E-29 215.6 6.9 90 336-428 122-232 (240)
2 4f25_A Polyadenylate-binding p 99.7 1.2E-17 4.2E-22 147.2 9.3 82 347-429 4-87 (115)
3 4fxv_A ELAV-like protein 1; RN 99.7 1.7E-17 5.8E-22 143.2 10.1 78 346-424 17-98 (99)
4 2lxi_A RNA-binding protein 10; 99.7 1.3E-17 4.3E-22 141.6 7.3 80 348-428 1-86 (91)
5 3s8s_A Histone-lysine N-methyl 99.7 3.2E-17 1.1E-21 144.4 9.9 81 346-427 4-88 (110)
6 1whw_A Hypothetical protein ri 99.7 1.8E-16 6.1E-21 134.7 11.4 83 345-428 5-91 (99)
7 3md1_A Nuclear and cytoplasmic 99.7 1.3E-16 4.3E-21 131.0 10.0 78 348-426 1-82 (83)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4.2E-21 131.6 9.8 79 344-423 3-85 (85)
9 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.9E-21 132.4 9.3 79 346-425 4-86 (87)
10 4f02_A Polyadenylate-binding p 99.7 7.5E-18 2.6E-22 162.5 2.3 85 347-432 102-188 (213)
11 2x1f_A MRNA 3'-END-processing 99.7 2.9E-16 1E-20 133.1 11.8 84 347-431 1-88 (96)
12 2cq3_A RNA-binding protein 9; 99.7 3.8E-16 1.3E-20 133.8 12.6 85 343-428 10-96 (103)
13 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.8E-16 1.3E-20 133.8 12.6 83 344-427 11-95 (103)
14 2dgs_A DAZ-associated protein 99.7 2E-16 6.7E-21 134.7 10.2 84 343-428 5-92 (99)
15 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.7E-16 5.9E-21 135.5 9.9 85 343-428 7-95 (102)
16 2e5h_A Zinc finger CCHC-type a 99.7 4.8E-16 1.7E-20 130.6 12.3 80 343-423 11-94 (94)
17 4a8x_A RNA-binding protein wit 99.7 2.6E-16 8.9E-21 130.3 10.4 79 347-426 3-86 (88)
18 2cq0_A Eukaryotic translation 99.7 2.5E-16 8.4E-21 135.0 10.3 84 344-428 11-98 (103)
19 1x5u_A Splicing factor 3B subu 99.7 3.8E-16 1.3E-20 134.1 11.3 84 344-428 11-98 (105)
20 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.8E-21 133.9 8.9 83 346-429 3-90 (96)
21 2dnz_A Probable RNA-binding pr 99.7 2.7E-16 9.2E-21 132.4 9.9 82 346-428 3-88 (95)
22 1sjq_A Polypyrimidine tract-bi 99.7 1.7E-16 5.8E-21 140.1 9.1 82 345-429 13-96 (105)
23 1x4a_A Splicing factor, argini 99.7 6.3E-16 2.2E-20 134.0 12.4 82 345-427 19-101 (109)
24 2dgx_A KIAA0430 protein; RRM d 99.7 4.7E-16 1.6E-20 132.4 11.2 81 346-427 7-92 (96)
25 1x4h_A RNA-binding protein 28; 99.7 5.9E-16 2E-20 133.9 11.9 84 344-428 11-104 (111)
26 2do4_A Squamous cell carcinoma 99.7 3.6E-16 1.2E-20 133.3 10.2 82 345-427 14-98 (100)
27 2dnm_A SRP46 splicing factor; 99.7 2.1E-16 7.1E-21 135.5 8.7 84 344-428 9-96 (103)
28 2dgo_A Cytotoxic granule-assoc 99.7 5.7E-16 1.9E-20 135.3 11.4 85 344-429 11-99 (115)
29 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-16 9.3E-21 133.7 8.9 83 343-427 14-96 (97)
30 2cqc_A Arginine/serine-rich sp 99.6 6.8E-16 2.3E-20 129.7 10.9 80 344-424 11-94 (95)
31 2cpf_A RNA binding motif prote 99.6 5E-16 1.7E-20 131.7 10.2 82 346-428 3-91 (98)
32 2lkz_A RNA-binding protein 5; 99.6 2.2E-16 7.6E-21 136.1 7.9 78 346-424 7-94 (95)
33 2dnh_A Bruno-like 5, RNA bindi 99.6 4.2E-16 1.4E-20 133.8 9.6 84 344-428 11-100 (105)
34 2ytc_A PRE-mRNA-splicing facto 99.6 8.4E-16 2.9E-20 126.8 11.0 76 345-423 9-85 (85)
35 2cpz_A CUG triplet repeat RNA- 99.6 3.7E-16 1.3E-20 136.7 9.3 84 344-428 21-108 (115)
36 1x5s_A Cold-inducible RNA-bind 99.6 2.9E-16 9.8E-21 134.2 8.4 84 343-427 7-94 (102)
37 2jvr_A Nucleolar protein 3; RN 99.6 4.6E-16 1.6E-20 138.0 9.9 82 344-426 24-106 (111)
38 2err_A Ataxin-2-binding protei 99.6 4.1E-16 1.4E-20 136.1 9.3 82 343-425 24-107 (109)
39 2wbr_A GW182, gawky, LD47780P; 99.6 6E-16 2.1E-20 132.9 10.1 76 345-423 4-79 (89)
40 3ns6_A Eukaryotic translation 99.6 7.5E-17 2.6E-21 138.8 4.4 79 348-427 6-95 (100)
41 2d9p_A Polyadenylate-binding p 99.6 4.3E-16 1.5E-20 133.5 8.9 83 345-428 12-96 (103)
42 3r27_A HnRNP L, heterogeneous 99.6 6.8E-16 2.3E-20 135.2 10.2 81 343-426 16-98 (100)
43 1oo0_B CG8781-PA, drosophila Y 99.6 7.4E-16 2.5E-20 133.5 10.4 82 345-427 23-108 (110)
44 2la4_A Nuclear and cytoplasmic 99.6 4.6E-16 1.6E-20 132.9 8.8 77 346-425 25-101 (101)
45 1s79_A Lupus LA protein; RRM, 99.6 2.9E-16 9.9E-21 136.9 7.7 77 346-424 9-88 (103)
46 1nu4_A U1A RNA binding domain; 99.6 4.9E-16 1.7E-20 131.3 8.8 86 345-431 5-95 (97)
47 3p5t_L Cleavage and polyadenyl 99.6 9.2E-17 3.1E-21 135.1 4.3 78 349-427 2-85 (90)
48 2cph_A RNA binding motif prote 99.6 8.3E-16 2.8E-20 132.1 10.2 84 344-428 11-100 (107)
49 1p27_B RNA-binding protein 8A; 99.6 4.5E-16 1.5E-20 133.8 8.4 80 346-426 21-104 (106)
50 3ucg_A Polyadenylate-binding p 99.6 9.1E-16 3.1E-20 127.5 9.8 76 348-425 6-85 (89)
51 2dgv_A HnRNP M, heterogeneous 99.6 5.4E-16 1.9E-20 129.8 8.5 82 345-427 5-88 (92)
52 1x4c_A Splicing factor, argini 99.6 2E-15 6.7E-20 131.2 12.3 80 346-429 13-97 (108)
53 2ywk_A Putative RNA-binding pr 99.6 6.8E-16 2.3E-20 129.9 9.1 79 345-424 13-94 (95)
54 2cq1_A PTB-like protein L; RRM 99.6 1.1E-15 3.7E-20 133.3 10.6 82 344-428 11-94 (101)
55 2dh8_A DAZ-associated protein 99.6 8E-16 2.7E-20 132.3 9.5 83 345-429 13-99 (105)
56 2dgp_A Bruno-like 4, RNA bindi 99.6 7.5E-16 2.6E-20 132.4 9.3 83 344-427 9-98 (106)
57 2dnq_A RNA-binding protein 4B; 99.6 1E-15 3.5E-20 128.3 9.8 79 345-428 5-83 (90)
58 2do0_A HnRNP M, heterogeneous 99.6 1.6E-15 5.3E-20 132.1 11.3 83 344-427 11-96 (114)
59 2cpi_A CCR4-NOT transcription 99.6 4.9E-16 1.7E-20 135.9 8.0 80 346-426 13-102 (111)
60 1u6f_A Tcubp1, RNA-binding pro 99.6 1.8E-15 6.1E-20 136.3 11.8 85 344-429 38-126 (139)
61 1x4d_A Matrin 3; structural ge 99.6 4.1E-16 1.4E-20 136.6 7.4 80 345-427 12-94 (102)
62 2a3j_A U1 small nuclear ribonu 99.6 6.8E-16 2.3E-20 140.0 9.1 86 345-431 26-116 (127)
63 2ad9_A Polypyrimidine tract-bi 99.6 6.3E-16 2.2E-20 139.2 8.7 83 343-428 26-110 (119)
64 2rs2_A Musashi-1, RNA-binding 99.6 1.6E-15 5.5E-20 132.5 11.1 82 344-427 21-106 (109)
65 3s7r_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 125.7 10.5 76 345-422 8-87 (87)
66 2cqd_A RNA-binding region cont 99.6 2.7E-15 9.4E-20 131.3 12.4 82 344-427 13-98 (116)
67 1why_A Hypothetical protein ri 99.6 1.2E-15 4E-20 129.7 9.7 80 345-427 14-95 (97)
68 2div_A TRNA selenocysteine ass 99.6 1E-15 3.5E-20 130.1 9.0 81 345-426 6-95 (99)
69 1x4g_A Nucleolysin TIAR; struc 99.6 1.5E-15 5E-20 131.9 10.2 80 346-428 23-102 (109)
70 2cpj_A Non-POU domain-containi 99.6 9.1E-16 3.1E-20 130.8 8.7 81 344-427 11-91 (99)
71 2fy1_A RNA-binding motif prote 99.6 1E-15 3.5E-20 135.4 9.1 83 346-429 5-90 (116)
72 2xnq_A Nuclear polyadenylated 99.6 2.2E-15 7.6E-20 129.0 10.9 79 343-426 17-96 (97)
73 2kxn_B Transformer-2 protein h 99.6 9.9E-16 3.4E-20 138.4 9.1 82 344-426 42-127 (129)
74 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.7E-20 128.7 9.4 80 344-427 7-86 (89)
75 3n9u_C Cleavage and polyadenyl 99.6 1.1E-15 3.8E-20 142.7 9.8 80 346-426 53-138 (156)
76 2dng_A Eukaryotic translation 99.6 2.2E-15 7.5E-20 129.3 10.8 80 345-427 12-95 (103)
77 2khc_A Testis-specific RNP-typ 99.6 1.7E-15 5.9E-20 132.8 10.3 79 344-423 36-118 (118)
78 2dgt_A RNA-binding protein 30; 99.6 3.4E-15 1.2E-19 125.6 11.7 79 345-428 7-85 (92)
79 2dgu_A Heterogeneous nuclear r 99.6 2.6E-15 9E-20 129.0 11.2 80 345-429 8-87 (103)
80 2cpe_A RNA-binding protein EWS 99.6 1.4E-15 4.8E-20 132.4 9.5 83 345-428 12-106 (113)
81 1p1t_A Cleavage stimulation fa 99.6 6.2E-16 2.1E-20 132.3 7.0 83 347-430 7-93 (104)
82 2cq4_A RNA binding motif prote 99.6 6.4E-16 2.2E-20 135.0 7.2 79 347-427 24-106 (114)
83 1wex_A Hypothetical protein (r 99.6 1.1E-15 3.7E-20 133.9 8.5 80 345-427 12-93 (104)
84 2nlw_A Eukaryotic translation 99.6 1.6E-15 5.5E-20 131.3 9.5 81 346-427 13-102 (105)
85 2jrs_A RNA-binding protein 39; 99.6 9.8E-16 3.3E-20 133.9 8.2 82 344-426 22-107 (108)
86 1wi8_A EIF-4B, eukaryotic tran 99.6 3.4E-15 1.1E-19 128.3 11.2 80 346-428 13-97 (104)
87 3lqv_A PRE-mRNA branch site pr 99.6 1.4E-15 4.7E-20 132.8 8.7 80 346-426 6-86 (115)
88 1x4b_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 131.9 10.0 80 347-428 26-109 (116)
89 2mss_A Protein (musashi1); RNA 99.6 6.9E-16 2.4E-20 124.7 6.2 71 350-422 1-75 (75)
90 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.4E-15 1.5E-19 133.1 12.1 79 343-422 58-140 (140)
91 2dgw_A Probable RNA-binding pr 99.6 3.8E-15 1.3E-19 124.8 11.0 80 345-427 7-89 (91)
92 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.4E-20 129.8 8.2 80 343-423 8-99 (99)
93 3ex7_B RNA-binding protein 8A; 99.6 1.6E-15 5.6E-20 134.4 9.1 84 345-429 19-106 (126)
94 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.8E-20 130.9 7.8 83 345-428 6-93 (104)
95 2cqg_A TDP-43, TAR DNA-binding 99.6 4.1E-15 1.4E-19 127.4 11.3 82 345-429 12-97 (103)
96 2kt5_A RNA and export factor-b 99.6 4.1E-15 1.4E-19 131.9 11.5 84 343-427 30-116 (124)
97 2cqp_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 128.6 8.4 82 344-426 11-96 (98)
98 3ulh_A THO complex subunit 4; 99.6 3E-15 1E-19 128.9 10.2 79 344-423 25-106 (107)
99 2cpd_A Apobec-1 stimulating pr 99.6 8.1E-15 2.8E-19 124.9 12.7 79 344-427 11-91 (99)
100 1x5p_A Negative elongation fac 99.6 9E-15 3.1E-19 124.3 12.9 79 345-428 12-90 (97)
101 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.5E-15 1.2E-19 137.3 11.1 84 343-427 34-121 (156)
102 2kn4_A Immunoglobulin G-bindin 99.6 2.5E-15 8.5E-20 138.0 10.0 83 345-428 67-153 (158)
103 2dnp_A RNA-binding protein 14; 99.6 3.9E-15 1.3E-19 124.7 10.3 78 345-427 6-83 (90)
104 2dis_A Unnamed protein product 99.6 1.9E-15 6.5E-20 130.5 8.7 83 346-429 6-96 (109)
105 2j76_E EIF-4B, EIF4B, eukaryot 99.6 8.3E-16 2.8E-20 131.9 6.2 79 345-426 16-99 (100)
106 2cpy_A RNA-binding protein 12; 99.6 2.3E-15 8E-20 132.2 8.9 81 345-427 12-96 (114)
107 3md3_A Nuclear and cytoplasmic 99.6 1.1E-15 3.6E-20 138.4 6.7 80 344-424 83-166 (166)
108 2i2y_A Fusion protein consists 99.6 2.7E-15 9.1E-20 137.3 9.2 81 344-426 69-149 (150)
109 2cqh_A IGF-II mRNA-binding pro 99.6 1.2E-15 4.2E-20 128.3 6.4 80 345-428 5-86 (93)
110 2jvo_A Nucleolar protein 3; nu 99.6 3.7E-15 1.3E-19 130.3 9.7 78 345-427 28-105 (108)
111 2hvz_A Splicing factor, argini 99.6 1.1E-15 3.7E-20 130.6 6.1 78 349-428 1-78 (101)
112 2m2b_A RNA-binding protein 10; 99.6 9.1E-16 3.1E-20 137.9 5.7 81 345-427 20-110 (131)
113 1l3k_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 142.0 7.3 84 346-431 102-189 (196)
114 2jwn_A Embryonic polyadenylate 99.6 3.2E-15 1.1E-19 132.1 9.0 78 348-427 36-117 (124)
115 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.6E-20 135.2 7.0 81 345-428 22-105 (112)
116 2fc9_A NCL protein; structure 99.6 7.9E-15 2.7E-19 125.2 11.0 80 344-427 11-93 (101)
117 1wg5_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 128.0 9.8 79 345-425 12-94 (104)
118 1x4e_A RNA binding motif, sing 99.6 7.9E-16 2.7E-20 127.2 4.5 77 346-423 3-83 (85)
119 2ek1_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 128.0 6.1 78 345-423 12-93 (95)
120 1whx_A Hypothetical protein ri 99.6 2.9E-15 9.9E-20 131.5 8.2 76 347-425 9-84 (111)
121 2kvi_A Nuclear polyadenylated 99.6 1.9E-15 6.6E-20 128.4 6.8 78 345-427 7-85 (96)
122 2cpx_A Hypothetical protein FL 99.6 3.8E-15 1.3E-19 129.8 8.8 83 345-428 22-108 (115)
123 2ki2_A SS-DNA binding protein 99.6 5.4E-16 1.9E-20 129.5 3.2 77 349-427 2-82 (90)
124 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4.2E-20 123.3 5.2 72 349-422 1-76 (77)
125 2krb_A Eukaryotic translation 99.6 2E-15 6.9E-20 124.3 6.3 71 348-419 1-80 (81)
126 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6E-15 2E-19 137.6 9.6 84 346-430 70-157 (165)
127 2lea_A Serine/arginine-rich sp 99.6 2.1E-15 7E-20 137.1 6.3 84 345-429 44-131 (135)
128 2cq2_A Hypothetical protein LO 99.6 7.1E-15 2.4E-19 131.6 9.3 78 346-426 23-107 (114)
129 2db1_A Heterogeneous nuclear r 99.6 3.8E-15 1.3E-19 132.1 7.3 79 346-426 15-99 (118)
130 1wf1_A RNA-binding protein RAL 99.6 8.4E-15 2.9E-19 127.3 9.2 76 346-426 25-101 (110)
131 2dnn_A RNA-binding protein 12; 99.5 8.8E-15 3E-19 129.2 8.9 75 348-425 16-93 (109)
132 1fj7_A Nucleolin RBD1, protein 99.5 1.7E-15 5.9E-20 129.3 4.2 80 346-428 15-98 (101)
133 2hgl_A HNRPF protein, heteroge 99.5 4E-15 1.4E-19 136.5 6.8 79 345-425 41-125 (136)
134 1fjc_A Nucleolin RBD2, protein 99.5 6.8E-15 2.3E-19 124.2 7.7 81 345-427 13-93 (96)
135 2e44_A Insulin-like growth fac 99.5 1.2E-14 3.9E-19 122.8 8.7 79 346-425 13-92 (96)
136 1iqt_A AUF1, heterogeneous nuc 99.5 2.6E-15 8.9E-20 121.1 4.3 71 350-422 1-75 (75)
137 1wf0_A TDP-43, TAR DNA-binding 99.5 7.5E-15 2.6E-19 122.5 7.1 79 346-428 3-81 (88)
138 1x5o_A RNA binding motif, sing 99.5 1.2E-14 4.1E-19 126.7 8.6 79 346-425 23-112 (114)
139 2lmi_A GRSF-1, G-rich sequence 99.5 2.9E-15 9.8E-20 130.2 4.6 80 345-426 8-93 (107)
140 1wg1_A KIAA1579 protein, homol 99.5 1.3E-14 4.4E-19 121.4 8.3 76 347-426 4-79 (88)
141 2xs2_A Deleted in azoospermia- 99.5 5E-15 1.7E-19 126.6 5.9 80 347-429 8-90 (102)
142 1wez_A HnRNP H', FTP-3, hetero 99.5 7.2E-15 2.5E-19 127.4 6.8 79 345-426 12-93 (102)
143 3q2s_C Cleavage and polyadenyl 99.5 5.6E-15 1.9E-19 145.9 6.8 79 347-426 67-151 (229)
144 3egn_A RNA-binding protein 40; 99.5 9.3E-15 3.2E-19 132.7 7.7 84 345-429 42-134 (143)
145 1wel_A RNA-binding protein 12; 99.5 2.9E-15 9.9E-20 133.3 4.1 80 345-426 22-105 (124)
146 2e5g_A U6 snRNA-specific termi 99.5 2.2E-14 7.4E-19 121.3 9.2 79 346-427 6-84 (94)
147 3nmr_A Cugbp ELAV-like family 99.5 3.6E-15 1.2E-19 136.3 4.0 76 346-422 93-174 (175)
148 1sjr_A Polypyrimidine tract-bi 99.5 2.3E-14 8E-19 135.8 9.5 78 348-426 46-125 (164)
149 3tyt_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 137.7 10.9 79 346-426 2-81 (205)
150 2fc8_A NCL protein; structure 99.5 3.6E-14 1.2E-18 121.1 9.1 82 343-428 10-95 (102)
151 2bz2_A Negative elongation fac 99.5 2.2E-14 7.4E-19 128.3 8.1 79 345-428 36-114 (121)
152 2hzc_A Splicing factor U2AF 65 99.5 3.9E-14 1.3E-18 117.1 9.0 72 346-421 4-86 (87)
153 2lcw_A RNA-binding protein FUS 99.3 1.4E-15 4.7E-20 133.5 0.0 82 346-428 5-98 (116)
154 4f02_A Polyadenylate-binding p 99.5 4.4E-14 1.5E-18 136.2 10.0 81 346-427 13-97 (213)
155 1b7f_A Protein (SXL-lethal pro 99.5 5.6E-14 1.9E-18 127.8 9.8 80 347-427 2-85 (168)
156 1fxl_A Paraneoplastic encephal 99.5 8.1E-14 2.8E-18 126.1 10.6 79 348-427 2-84 (167)
157 2dha_A FLJ20171 protein; RRM d 99.5 1.7E-14 5.7E-19 130.2 5.3 78 346-425 21-105 (123)
158 3md3_A Nuclear and cytoplasmic 99.5 5.7E-14 2E-18 127.0 8.8 78 349-427 1-81 (166)
159 3beg_B Splicing factor, argini 99.5 2.4E-14 8.1E-19 126.2 5.9 76 347-426 15-95 (115)
160 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.9E-19 133.3 4.3 79 346-427 44-125 (139)
161 2f3j_A RNA and export factor b 99.5 8E-14 2.7E-18 132.5 9.5 82 344-426 84-168 (177)
162 2cjk_A Nuclear polyadenylated 99.5 5E-14 1.7E-18 128.3 7.5 77 347-425 86-166 (167)
163 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 125.7 10.6 76 349-426 29-107 (130)
164 2e5i_A Heterogeneous nuclear r 99.5 1.4E-13 4.9E-18 124.6 10.2 74 350-426 27-103 (124)
165 2hgm_A HNRPF protein, heteroge 99.5 5E-14 1.7E-18 127.8 6.5 77 346-425 40-121 (126)
166 2yh0_A Splicing factor U2AF 65 99.4 1.6E-13 5.6E-18 128.2 9.6 81 346-427 112-196 (198)
167 2dnl_A Cytoplasmic polyadenyla 99.4 1.8E-13 6.2E-18 120.1 9.1 76 346-425 6-88 (114)
168 1l3k_A Heterogeneous nuclear r 99.4 2E-13 6.8E-18 127.5 9.9 81 345-427 10-94 (196)
169 3pgw_S U1-70K; protein-RNA com 99.4 2.4E-13 8.2E-18 146.3 11.8 83 344-427 98-184 (437)
170 2ghp_A U4/U6 snRNA-associated 99.4 7.5E-14 2.6E-18 139.5 7.4 81 344-426 206-292 (292)
171 2qfj_A FBP-interacting repress 99.4 1.7E-13 5.7E-18 129.9 9.1 81 346-427 123-207 (216)
172 2pe8_A Splicing factor 45; RRM 99.4 3.2E-13 1.1E-17 118.3 10.2 80 345-424 5-93 (105)
173 2adc_A Polypyrimidine tract-bi 99.4 1.5E-13 5.2E-18 133.8 8.8 82 343-426 29-111 (229)
174 2g4b_A Splicing factor U2AF 65 99.4 1.6E-13 5.6E-18 125.5 8.3 76 346-422 92-171 (172)
175 2dit_A HIV TAT specific factor 99.4 5.8E-13 2E-17 116.6 11.3 83 344-427 11-104 (112)
176 1fxl_A Paraneoplastic encephal 99.4 1.8E-13 6E-18 123.9 8.2 77 345-422 85-167 (167)
177 3pgw_A U1-A; protein-RNA compl 99.4 4.3E-13 1.5E-17 133.3 11.4 82 345-427 6-92 (282)
178 2qfj_A FBP-interacting repress 99.4 3E-13 1E-17 128.2 9.4 82 347-429 27-112 (216)
179 2voo_A Lupus LA protein; RNA-b 99.4 3.8E-13 1.3E-17 129.4 10.2 75 348-424 109-186 (193)
180 2diu_A KIAA0430 protein; struc 99.4 3.5E-13 1.2E-17 117.1 8.0 79 345-430 5-89 (96)
181 1fje_B Nucleolin RBD12, protei 99.4 4.6E-13 1.6E-17 123.3 8.9 80 345-426 96-175 (175)
182 3nmr_A Cugbp ELAV-like family 99.4 4E-13 1.4E-17 122.7 7.9 80 347-427 2-90 (175)
183 2cjk_A Nuclear polyadenylated 99.4 4.6E-13 1.6E-17 121.9 8.2 77 347-426 2-82 (167)
184 1qm9_A Polypyrimidine tract-bi 99.4 2.8E-13 9.6E-18 127.6 6.7 78 347-426 2-80 (198)
185 3pgw_A U1-A; protein-RNA compl 99.4 1.1E-12 3.7E-17 130.4 11.3 78 344-423 203-281 (282)
186 3sde_A Paraspeckle component 1 99.4 5E-13 1.7E-17 132.8 8.6 79 347-426 95-180 (261)
187 1b7f_A Protein (SXL-lethal pro 99.4 1.1E-12 3.8E-17 119.2 9.4 77 345-422 86-168 (168)
188 2j8a_A Histone-lysine N-methyl 99.4 7.2E-13 2.5E-17 121.4 7.3 72 349-421 3-92 (136)
189 3smz_A Protein raver-1, ribonu 99.3 1.8E-12 6.1E-17 129.0 9.7 86 345-431 181-270 (284)
190 3sde_A Paraspeckle component 1 99.3 2.4E-12 8.2E-17 127.9 10.3 79 345-426 19-97 (261)
191 2yh0_A Splicing factor U2AF 65 99.3 2.6E-12 8.9E-17 120.1 9.6 77 346-426 2-89 (198)
192 2g4b_A Splicing factor U2AF 65 99.3 3.2E-12 1.1E-16 116.9 9.6 76 347-426 3-89 (172)
193 1fje_B Nucleolin RBD12, protei 99.3 1.2E-12 4.3E-17 120.4 6.8 82 344-427 9-93 (175)
194 1qm9_A Polypyrimidine tract-bi 99.3 3.2E-12 1.1E-16 120.4 8.6 79 345-425 117-197 (198)
195 2adc_A Polypyrimidine tract-bi 99.3 4.4E-12 1.5E-16 123.4 9.2 79 345-425 148-228 (229)
196 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6E-16 106.8 11.4 79 346-427 8-92 (100)
197 3v4m_A Splicing factor U2AF 65 99.3 7.4E-12 2.5E-16 109.5 8.8 81 345-425 2-97 (105)
198 3smz_A Protein raver-1, ribonu 99.3 9.2E-12 3.1E-16 123.8 10.3 81 346-427 93-177 (284)
199 1jmt_A Splicing factor U2AF 35 99.3 1.4E-12 4.8E-17 113.8 3.6 69 353-422 20-103 (104)
200 2ghp_A U4/U6 snRNA-associated 99.2 1.1E-11 3.9E-16 123.6 9.1 80 347-427 116-199 (292)
201 3tyt_A Heterogeneous nuclear r 99.2 7.3E-12 2.5E-16 121.3 6.8 77 345-422 120-204 (205)
202 3tht_A Alkylated DNA repair pr 99.2 2.2E-11 7.6E-16 127.7 10.7 79 343-423 13-97 (345)
203 3s6e_A RNA-binding protein 39; 99.2 2.2E-11 7.6E-16 108.5 8.9 80 346-425 5-93 (114)
204 3ue2_A Poly(U)-binding-splicin 99.2 1.4E-11 4.8E-16 110.4 7.2 79 346-424 18-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 1.5E-09 5.1E-14 93.5 9.0 79 343-426 2-87 (91)
206 1ufw_A Synaptojanin 2; RNP dom 98.7 2E-08 6.9E-13 87.0 6.6 73 343-421 10-91 (95)
207 1owx_A Lupus LA protein, SS-B, 98.6 1.1E-07 3.7E-12 85.9 9.3 77 344-423 14-94 (121)
208 3dxb_A Thioredoxin N-terminall 98.6 4.9E-08 1.7E-12 94.3 5.9 64 361-424 141-212 (222)
209 2dhx_A Poly (ADP-ribose) polym 97.3 0.001 3.4E-08 58.5 9.7 75 346-426 6-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 97.3 0.00094 3.2E-08 59.5 8.7 75 347-424 20-99 (117)
211 2d9n_A Cleavage and polyadenyl 96.5 0.0012 4.1E-08 54.7 2.6 25 190-214 8-32 (77)
212 1wey_A Calcipressin 1; structu 96.4 0.0053 1.8E-07 54.0 6.2 76 348-425 5-84 (104)
213 1wwh_A Nucleoporin 35, nucleop 96.3 0.013 4.6E-07 52.6 8.7 74 348-426 24-98 (119)
214 2rhk_C Cleavage and polyadenyl 96.3 0.00078 2.7E-08 55.3 0.5 24 191-214 15-38 (72)
215 3d2q_A Muscleblind-like protei 95.8 0.0023 7.9E-08 52.0 1.1 23 192-214 6-29 (70)
216 1i2t_A HYD protein; four alpha 95.8 0.0064 2.2E-07 48.6 3.5 51 8-61 7-57 (61)
217 2d9m_A Zinc finger CCCH-type d 95.8 0.0023 7.9E-08 52.3 0.9 23 192-214 20-42 (69)
218 2cqe_A KIAA1064 protein; CCCH 95.7 0.0034 1.2E-07 54.4 2.0 23 192-214 13-35 (98)
219 3p3d_A Nucleoporin 53; structu 95.5 0.015 5E-07 53.2 5.1 62 361-423 18-97 (132)
220 1m9o_A Tristetraproline; Cys3H 95.4 0.006 2E-07 49.8 2.1 25 190-214 10-35 (77)
221 2cqe_A KIAA1064 protein; CCCH 95.2 0.0053 1.8E-07 53.2 1.4 23 192-214 36-59 (98)
222 3d2q_A Muscleblind-like protei 95.2 0.0053 1.8E-07 49.9 1.2 23 191-214 41-63 (70)
223 3d2n_A Muscleblind-like protei 95.1 0.0073 2.5E-07 50.9 1.8 23 192-214 9-32 (83)
224 1m9o_A Tristetraproline; Cys3H 94.8 0.005 1.7E-07 50.2 0.0 23 192-214 50-73 (77)
225 1nmr_A Poly(A)-binding protein 94.8 0.013 4.4E-07 49.8 2.5 52 8-62 29-80 (85)
226 1ifw_A Polyadenylate-binding p 94.7 0.019 6.7E-07 49.3 3.5 52 8-62 26-79 (92)
227 3kuj_A Polyadenylate-binding p 94.5 0.03 1E-06 47.8 4.0 51 8-61 26-76 (88)
228 2e5s_A Otthump00000018578; ZF- 94.4 0.0093 3.2E-07 51.8 0.8 24 190-214 54-77 (98)
229 3pq1_A Poly(A) RNA polymerase; 94.2 0.016 5.6E-07 62.9 2.4 56 348-406 53-108 (464)
230 2rpp_A Muscleblind-like protei 94.2 0.011 3.9E-07 50.5 0.9 23 192-214 17-40 (89)
231 2e5s_A Otthump00000018578; ZF- 94.1 0.0056 1.9E-07 53.1 -1.3 23 192-214 20-43 (98)
232 3d2n_A Muscleblind-like protei 93.6 0.019 6.6E-07 48.4 1.1 24 190-214 41-64 (83)
233 1g9l_A Polyadenylate-binding p 93.5 0.035 1.2E-06 51.4 2.7 52 9-63 73-124 (144)
234 2dyd_A Poly(A)-binding protein 93.0 0.029 9.9E-07 47.6 1.4 52 8-62 28-79 (85)
235 2kn4_A Immunoglobulin G-bindin 92.8 0.045 1.5E-06 49.3 2.4 33 378-410 2-36 (158)
236 2d9n_A Cleavage and polyadenyl 92.5 0.03 1E-06 46.2 0.7 22 192-214 38-60 (77)
237 1uw4_A UPF3X; nonsense mediate 92.1 0.44 1.5E-05 40.7 7.5 65 349-414 2-72 (91)
238 2rhk_C Cleavage and polyadenyl 92.0 0.034 1.2E-06 45.5 0.5 23 191-214 43-66 (72)
239 2rpp_A Muscleblind-like protei 90.6 0.065 2.2E-06 45.8 0.8 23 191-214 50-72 (89)
240 1whv_A Poly(A)-specific ribonu 89.8 1.3 4.5E-05 38.5 8.4 56 346-407 14-69 (100)
241 2i2y_A Fusion protein consists 88.4 0.16 5.5E-06 45.5 1.7 41 385-426 11-52 (150)
242 3ctr_A Poly(A)-specific ribonu 87.0 0.73 2.5E-05 40.2 4.9 54 349-408 7-60 (101)
243 4f25_A Polyadenylate-binding p 79.9 0.083 2.8E-06 45.6 -4.1 20 345-365 94-113 (115)
244 2l08_A Regulator of nonsense t 78.0 3.2 0.00011 35.9 5.4 66 348-414 9-80 (97)
245 3v33_A Ribonuclease ZC3H12A; r 75.3 0.63 2.2E-05 45.9 0.3 25 188-214 188-212 (223)
246 2fc6_A Nuclear, target of EGR1 74.3 0.63 2.1E-05 35.6 -0.0 25 190-214 18-43 (50)
247 3d45_A Poly(A)-specific ribonu 56.7 26 0.00088 38.2 8.3 57 347-409 439-495 (507)
248 3u9g_A Zinc finger CCCH-type a 43.6 9.5 0.00033 37.7 2.0 23 191-214 174-196 (229)
249 3u9g_A Zinc finger CCCH-type a 41.7 8.4 0.00029 38.1 1.3 25 190-214 87-115 (229)
250 2g0c_A ATP-dependent RNA helic 32.8 50 0.0017 25.9 4.4 69 350-423 2-75 (76)
251 1i25_A Huwentoxin-II, HWTX-II; 23.2 30 0.001 24.5 1.2 20 189-211 12-31 (37)
252 3ts2_A Protein LIN-28 homolog 22.6 17 0.00059 33.2 -0.2 28 364-395 2-29 (148)
253 3e50_C Protransforming growth 21.4 23 0.00077 26.8 0.3 22 192-214 5-26 (50)
254 2rnl_A Amphiregulin; AR, color 20.7 22 0.00076 26.8 0.2 21 193-214 10-30 (50)
255 3dve_B Voltage-dependent N-typ 20.2 17 0.00057 23.6 -0.5 14 21-34 1-14 (23)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.90 E-value=2.4e-24 Score=215.59 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCC---------CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh
Q 008081 336 GEKSDPGGIVAGSRQIYLTFPAESTF---------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 406 (578)
Q Consensus 336 ~~r~d~~~~~~~~rtIyVg~L~~~~~---------tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~ 406 (578)
.++...+......++||||+| +..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.
T Consensus 122 d~~~g~gs~~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 122 EDMGGIGSFRKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp ---------CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHH
T ss_pred hcccCcCccccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHH
Confidence 334444455677899999999 6776 7999999999999999999998 899999999999999999999
Q ss_pred CCCceE------------cCeEEEEeecccCccc
Q 008081 407 GNPHFV------------CGARVLVKPYREKSRL 428 (578)
Q Consensus 407 mn~~~I------------~Gr~V~Vk~Ak~K~k~ 428 (578)
|++..| +|+.|.|+||+++...
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 999999 9999999999877543
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=1.2e-17 Score=147.19 Aligned_cols=82 Identities=21% Similarity=0.461 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
...+|||+|| ++++||++|+++|++||+|.+|+|++| .+||||||+|.+.++|++|++.|+++.|+|+.|+|.++++
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3568999999 889999999999999999999999997 5689999999999999999999999999999999999987
Q ss_pred Cccch
Q 008081 425 KSRLV 429 (578)
Q Consensus 425 K~k~~ 429 (578)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=143.25 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....+|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999 899999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=141.63 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEee
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKP 421 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~m-n~~~I~Gr~V~Vk~ 421 (578)
+++|||+|| ++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.+ ++..|+|++|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 479999999 89999999999999999 8999999986 68999999999999999999987 46689999999999
Q ss_pred cccCccc
Q 008081 422 YREKSRL 428 (578)
Q Consensus 422 Ak~K~k~ 428 (578)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887654
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=144.43 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
++.++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 56789999999 899999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
+..+.+
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 975543
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=134.73 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999 889999999999999999999999986 578999999999999999999999999999999999
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887653
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.3e-16 Score=131.00 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
+.+|||+|| +.++++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 358999999 889999999999999999999999986 569999999999999999999999999999999999998
Q ss_pred cCc
Q 008081 424 EKS 426 (578)
Q Consensus 424 ~K~ 426 (578)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.2e-16 Score=131.63 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| ++++++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 3 ~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4467889999999 789999999999999999999999885 57999999999999999999999999999999999
Q ss_pred eecc
Q 008081 420 KPYR 423 (578)
Q Consensus 420 k~Ak 423 (578)
.+++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9975
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=132.42 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
+..++|||+|| +.++++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45679999999 789999999999999999999999986 5689999999999999999999999999999999999
Q ss_pred cccC
Q 008081 422 YREK 425 (578)
Q Consensus 422 Ak~K 425 (578)
+++|
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9876
No 10
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=7.5e-18 Score=162.54 Aligned_cols=85 Identities=19% Similarity=0.424 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
..++|||+|| ++.+|+++|+++|++||.|++|+|++| .+||||||+|.+.++|++|++.||+..|+|++|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4579999999 899999999999999999999999986 5799999999999999999999999999999999999998
Q ss_pred Cccchhhh
Q 008081 425 KSRLVDRK 432 (578)
Q Consensus 425 K~k~~~r~ 432 (578)
|.+...+.
T Consensus 181 ~~~~~~~~ 188 (213)
T 4f02_A 181 RKEREAEL 188 (213)
T ss_dssp HHHHHHHH
T ss_pred Ccccchhh
Confidence 76544433
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.9e-16 Score=133.13 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
++++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 3679999999 889999999999999999999999986 56999999999999999999999999999999999999
Q ss_pred ccCccchhh
Q 008081 423 REKSRLVDR 431 (578)
Q Consensus 423 k~K~k~~~r 431 (578)
+++......
T Consensus 80 ~~~~~~~~~ 88 (96)
T 2x1f_A 80 SNSDISGVS 88 (96)
T ss_dssp SCSSGGGHH
T ss_pred CCCCCCCcc
Confidence 988765543
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=133.82 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+++ .++|||||+|.+.++|++|++.|+++.|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456789999999 889999999999999999999999986 569999999999999999999999999999999999
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99887654
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=133.83 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+++ .+||||||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999 889999999999999999999999996 5789999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=134.71 Aligned_cols=84 Identities=27% Similarity=0.384 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++ |+++.|+|+.|.
T Consensus 5 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 5 SSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 34466789999999 889999999999999999999999986 579999999999999999999 899999999999
Q ss_pred EeecccCccc
Q 008081 419 VKPYREKSRL 428 (578)
Q Consensus 419 Vk~Ak~K~k~ 428 (578)
|.+++++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999887654
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=135.52 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
...+..++|||+|| ++.+|+++|+++|++||+|++|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 7 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 44567889999999 889999999999999999999999886 5799999999999999999999999999999999
Q ss_pred EeecccCccc
Q 008081 419 VKPYREKSRL 428 (578)
Q Consensus 419 Vk~Ak~K~k~ 428 (578)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887654
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=130.63 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
...+..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|+
T Consensus 11 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34567889999999 889999999999999999999999985 5799999999999999999999999999999999
Q ss_pred Eeecc
Q 008081 419 VKPYR 423 (578)
Q Consensus 419 Vk~Ak 423 (578)
|.+|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 17
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=130.26 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC-----CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dk-----sRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4679999999 8999999999999999999999998863 899999999999999999999999999999999999
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
+.++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=135.02 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3456789999999 889999999999999999999999986 56899999999999999999999999999999999
Q ss_pred eecccCccc
Q 008081 420 KPYREKSRL 428 (578)
Q Consensus 420 k~Ak~K~k~ 428 (578)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999887653
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=134.06 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|+++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 889999999999999999999999986 57999999999999999999999999999999999
Q ss_pred eecccCccc
Q 008081 420 KPYREKSRL 428 (578)
Q Consensus 420 k~Ak~K~k~ 428 (578)
.+++++.+.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887653
No 20
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=133.92 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dV-rI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
...++|||+|| ++.+|+++|+++|++||+|.+| +|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 8899999999999999999999 99886 579999999999999999999999999999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
++.++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998876543
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=132.45 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999 889999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred cccCccc
Q 008081 422 YREKSRL 428 (578)
Q Consensus 422 Ak~K~k~ 428 (578)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887543
No 22
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=140.10 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn--~~~I~Gr~V~Vk~A 422 (578)
.+..++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.++ +..|+|++|+|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 466889999999 89999999999999999999999998 58999999999999999999765 58999999999999
Q ss_pred ccCccch
Q 008081 423 REKSRLV 429 (578)
Q Consensus 423 k~K~k~~ 429 (578)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8876543
No 23
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-16 Score=133.98 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 19 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 456789999999 889999999999999999999999886 679999999999999999999999999999999999998
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
++.+
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7754
No 24
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.7e-16 Score=132.43 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr----~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
...++|||+|| ++.+++++|+ ++|++||+|.+|+|+++ ..||||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 7 ~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45679999999 8999999999 99999999999999986 239999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987643
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-16 Score=133.89 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCC------CceEc
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGN------PHFVC 413 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn------~~~I~ 413 (578)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|+ ++.|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456789999999 889999999999999999999999986 579999999999999999999999 99999
Q ss_pred CeEEEEeecccCccc
Q 008081 414 GARVLVKPYREKSRL 428 (578)
Q Consensus 414 Gr~V~Vk~Ak~K~k~ 428 (578)
|+.|.|.++.++.+.
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887553
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=133.29 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 14 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 355789999999 889999999999999999999999985 5689999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988754
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=135.49 Aligned_cols=84 Identities=24% Similarity=0.230 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456789999999 889999999999999999999999985 57999999999999999999999999999999999
Q ss_pred eecccCccc
Q 008081 420 KPYREKSRL 428 (578)
Q Consensus 420 k~Ak~K~k~ 428 (578)
.+++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876543
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=5.7e-16 Score=135.27 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++.+|+++|+++|++||.|.+|+|+++ +++|||||+|.+.++|++|++.|+++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999986 56899999999999999999999999999999999
Q ss_pred eecccCccch
Q 008081 420 KPYREKSRLV 429 (578)
Q Consensus 420 k~Ak~K~k~~ 429 (578)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998876543
No 29
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=133.75 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...+..++|||+|| ++.+|+++|+++|++||+|. ++++.++++|||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 14 ~~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34456789999999 89999999999999999997 78888889999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
+++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.8e-16 Score=129.73 Aligned_cols=80 Identities=26% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3466789999999 789999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eeccc
Q 008081 420 KPYRE 424 (578)
Q Consensus 420 k~Ak~ 424 (578)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=131.71 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 889999999999999999999999974 4589999999999999999999999999999999
Q ss_pred EeecccCccc
Q 008081 419 VKPYREKSRL 428 (578)
Q Consensus 419 Vk~Ak~K~k~ 428 (578)
|.+++++.+.
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999877543
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=136.11 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCC--eeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCc----eEcCe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP--VQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCGA 415 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~--V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~----~I~Gr 415 (578)
....||||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|+||
T Consensus 7 ~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 45679999999 899999999999999995 679999986 68999999999999999999999875 69999
Q ss_pred EEEEeeccc
Q 008081 416 RVLVKPYRE 424 (578)
Q Consensus 416 ~V~Vk~Ak~ 424 (578)
+|.|.+|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=4.2e-16 Score=133.77 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcC---eEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCG---ARV 417 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G---r~V 417 (578)
..+..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3466899999999 889999999999999999999999986 568999999999999999999999999998 999
Q ss_pred EEeecccCccc
Q 008081 418 LVKPYREKSRL 428 (578)
Q Consensus 418 ~Vk~Ak~K~k~ 428 (578)
.|.+++++...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887653
No 34
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.4e-16 Score=126.83 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEeecc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYR 423 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~m-n~~~I~Gr~V~Vk~Ak 423 (578)
.+..++|||+|| +..+++++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++.| ++..++|++|+|.+++
T Consensus 9 ~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999 78999999999999999999999998 7999999999999999999999 9999999999999975
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=3.7e-16 Score=136.68 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| ++++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eecccCccc
Q 008081 420 KPYREKSRL 428 (578)
Q Consensus 420 k~Ak~K~k~ 428 (578)
.+++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887653
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=134.17 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
...+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34567889999999 889999999999999999999999986 5799999999999999999999999999999999
Q ss_pred EeecccCcc
Q 008081 419 VKPYREKSR 427 (578)
Q Consensus 419 Vk~Ak~K~k 427 (578)
|.+++++.+
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987764
No 37
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=4.6e-16 Score=138.03 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..+...+|||+|| ++++|+++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 24 ~p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 24 LPAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp -CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3455679999999 89999999999999999 999999987779999999999999999999999999999999999998
Q ss_pred ccCc
Q 008081 423 REKS 426 (578)
Q Consensus 423 k~K~ 426 (578)
..+.
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 38
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=136.13 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
......++|||+|| +.++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|++..|+|+.|.|.
T Consensus 24 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566789999999 889999999999999999999999986 569999999999999999999999999999999999
Q ss_pred ecccC
Q 008081 421 PYREK 425 (578)
Q Consensus 421 ~Ak~K 425 (578)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99876
No 39
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=6e-16 Score=132.90 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
...+.-|||||| ++.+||++|+++|.+||+|.+++|+. +||||||+|.++++|++|++.||+..+.||.|+|+.|.
T Consensus 4 ~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 345778999999 89999999999999999999999988 99999999999999999999999999999999999994
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=7.5e-17 Score=138.77 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCC------CCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC-eE
Q 008081 348 SRQIYLTFPAES------TFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG-AR 416 (578)
Q Consensus 348 ~rtIyVg~L~~~------~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G-r~ 416 (578)
.++|||+|| ++ ++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+| +.
T Consensus 6 ~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 579999999 78 9999999999999999999999986 579999999999999999999999999999 99
Q ss_pred EEEeecccCcc
Q 008081 417 VLVKPYREKSR 427 (578)
Q Consensus 417 V~Vk~Ak~K~k 427 (578)
|+|.++.++.+
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 41
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=133.50 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356789999999 889999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccCccc
Q 008081 423 REKSRL 428 (578)
Q Consensus 423 k~K~k~ 428 (578)
+++.+.
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887654
No 42
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=135.20 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCc--eEcCeEEEEe
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPH--FVCGARVLVK 420 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~--~I~Gr~V~Vk 420 (578)
...+++++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.|++. .|+|++|.|.
T Consensus 16 ~~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 44578899999999 78999999999999999999999997 8999999999999999999998765 4889999999
Q ss_pred ecccCc
Q 008081 421 PYREKS 426 (578)
Q Consensus 421 ~Ak~K~ 426 (578)
+++.|.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998763
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=7.4e-16 Score=133.53 Aligned_cols=82 Identities=11% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+..|++..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 355789999999 889999999999999999999999875 568999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
+++++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987754
No 44
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.6e-16 Score=132.88 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
+..++|||+|| +.++++++|+++|++||.|.+|+|+. +||||||+|.+.++|++|+..||+..|+|++|+|.++++|
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999 88999999999999999999999996 8999999999999999999999999999999999999865
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=136.90 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...++|||+|| ++++|+++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++ ++++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 44689999999 899999999999999999999999986 689999999999999999999 7999999999999987
Q ss_pred cc
Q 008081 423 RE 424 (578)
Q Consensus 423 k~ 424 (578)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 46
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=4.9e-16 Score=131.33 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr----~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.+..++|||+|| ++++++++|+ ++|++||+|.+|+|+.. +++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356789999999 8999999999 99999999999999853 67999999999999999999999999999999999
Q ss_pred eecccCccchhh
Q 008081 420 KPYREKSRLVDR 431 (578)
Q Consensus 420 k~Ak~K~k~~~r 431 (578)
.+++++.+...+
T Consensus 84 ~~a~~~~~~~~k 95 (97)
T 1nu4_A 84 QYAKTDSDIIAK 95 (97)
T ss_dssp EECSSCCTHHHH
T ss_pred EEccCCCccccc
Confidence 999988765543
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=9.2e-17 Score=135.10 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG--~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
.+|||+|| ++++|+++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 89999999999999999 9999999986 67999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87754
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.3e-16 Score=132.14 Aligned_cols=84 Identities=20% Similarity=0.379 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhC-CCceEcCeEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARV 417 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-----ksRGfgFVtF~~~e~A~~Al~~m-n~~~I~Gr~V 417 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.| |++.|+|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456789999999 889999999999999999999999875 46999999999999999999999 9999999999
Q ss_pred EEeecccCccc
Q 008081 418 LVKPYREKSRL 428 (578)
Q Consensus 418 ~Vk~Ak~K~k~ 428 (578)
.|.+++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887653
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=133.83 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 21 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45689999999 889999999999999999999999986 5589999999999999999999999999999999999
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98775
No 50
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=9.1e-16 Score=127.46 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|+ .|++..|+|+.|+|.+++
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 579999999 889999999999999999999999985 57999999999999999999 899999999999999987
Q ss_pred cC
Q 008081 424 EK 425 (578)
Q Consensus 424 ~K 425 (578)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=5.4e-16 Score=129.81 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
.+..++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999 889999999999999999999999985 67999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2e-15 Score=131.23 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC-----eEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-----ARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G-----r~V~Vk 420 (578)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++|++.||+..|+| +.|+|.
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34679999999 899999999999999999999999985 999999999999999999999999999 999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (108)
T 1x4c_A 89 VDGPRSPSY 97 (108)
T ss_dssp ESSCCSCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=129.94 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 13 ~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 355789999999 889999999999999999999999986 5689999999999999999999999999999999999
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 54
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=133.28 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC--CCceEcCeEEEEee
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG--NPHFVCGARVLVKP 421 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~m--n~~~I~Gr~V~Vk~ 421 (578)
..++.++|||+|| ++++||++|+++|++||.|.+|+|++ .||||||+|++.++|++|++.+ ++..|+|++|.|.+
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3467889999999 78999999999999999999999998 5999999999999999999976 57889999999999
Q ss_pred cccCccc
Q 008081 422 YREKSRL 428 (578)
Q Consensus 422 Ak~K~k~ 428 (578)
++++...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876543
No 55
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=132.26 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. +++.|+|+.|.|.
T Consensus 13 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456789999999 889999999999999999999999986 5689999999999999999999 9999999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 999886543
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=7.5e-16 Score=132.44 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE---cCeE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV---CGAR 416 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I---~Gr~ 416 (578)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|++..+ .|++
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999 889999999999999999999999985 5799999999999999999999999988 8999
Q ss_pred EEEeecccCcc
Q 008081 417 VLVKPYREKSR 427 (578)
Q Consensus 417 V~Vk~Ak~K~k 427 (578)
|.|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=128.30 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|++..|+|++|+|.++++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 456789999999 8899999999999999999999997 79999999999999999999999999999999999988
Q ss_pred Cccc
Q 008081 425 KSRL 428 (578)
Q Consensus 425 K~k~ 428 (578)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=132.07 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456789999999 889999999999999999999999986 568999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
+++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9875543
No 59
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=135.89 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHH---HHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVS---NYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr---~~FsqfG~V~dVrI~~d-------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
...++|||+|| ++++++++|+ ++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 45679999999 8999999999 99999999999999985 3569999999999999999999999999999
Q ss_pred EEEEeecccCc
Q 008081 416 RVLVKPYREKS 426 (578)
Q Consensus 416 ~V~Vk~Ak~K~ 426 (578)
.|+|.+|.+|.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998875
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=136.34 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++++|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 899999999999999999999999986 45999999999999999999999999999999999
Q ss_pred eecccCccch
Q 008081 420 KPYREKSRLV 429 (578)
Q Consensus 420 k~Ak~K~k~~ 429 (578)
.+++++.+..
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 61
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-16 Score=136.61 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC--ceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~--~~I~Gr~V~Vk~ 421 (578)
..+.++|||+|| ++ ++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.|++ ..|+|++|.|.+
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 356889999999 78 999999999999999999999998 679999999999999999998764 569999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 62
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=6.8e-16 Score=139.95 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr----~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.++.++|||+|| ++.+++++|+ ++|++||+|.+|.|... ++||||||+|.+.++|..|++.||+..|.|+.|+|
T Consensus 26 ~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 455789999999 7899999876 69999999999999764 78999999999999999999999999999999999
Q ss_pred eecccCccchhh
Q 008081 420 KPYREKSRLVDR 431 (578)
Q Consensus 420 k~Ak~K~k~~~r 431 (578)
.+++.+.....+
T Consensus 105 ~~a~~~~~~~~~ 116 (127)
T 2a3j_A 105 TFSETPQSQVAE 116 (127)
T ss_dssp EECCCCCHHHHC
T ss_pred EEccCcchhccc
Confidence 999988765543
No 63
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.3e-16 Score=139.22 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEe
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVK 420 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn--~~~I~Gr~V~Vk 420 (578)
...++.++|||+|| ++++||++|+++|++||+|++|+|++ .||||||+|++.++|++|++.++ +..|+|+.|+|.
T Consensus 26 ~~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 26 SAGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34567899999999 88999999999999999999999998 58999999999999999999886 468999999999
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
+++++...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.6e-15 Score=132.54 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.|+|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 3456789999999 899999999999999999999999985 57999999999999999999996 59999999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987754
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.7e-15 Score=125.73 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 8 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 356789999999 889999999999999999999999986 5699999999999999999976 8899999999999
Q ss_pred ec
Q 008081 421 PY 422 (578)
Q Consensus 421 ~A 422 (578)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=131.33 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+++ .|+|+.|+|
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456789999999 889999999999999999999999986 5799999999999999999999998 899999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.++.++.+
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99986644
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=129.66 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc--CeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC--GARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~--Gr~V~Vk~A 422 (578)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.||+..|+ |+.|.|.++
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 356789999999 88999999999999999999999998 5999999999999999999999999999 999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=130.06 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCee-EEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeE---
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--- 416 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~-dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~--- 416 (578)
....++|||+|| ++.+++++|+++|++||+|. +|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999 88999999999999999999 9999986 57899999999999999999999999999999
Q ss_pred -EEEeecccCc
Q 008081 417 -VLVKPYREKS 426 (578)
Q Consensus 417 -V~Vk~Ak~K~ 426 (578)
|+|.++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 69
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=131.87 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
+..++|||+|| +..+|+++|+++|++||+|.+|+|++ .+|||||+|.+.++|++|+..|++..|+|++|+|.+++++
T Consensus 23 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45789999999 88999999999999999999999998 4999999999999999999999999999999999999887
Q ss_pred ccc
Q 008081 426 SRL 428 (578)
Q Consensus 426 ~k~ 428 (578)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 70
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=130.77 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+..++|||++| ++.+|+++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.|+++.|+|++|+|.+++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 11 TFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3466789999999 88999999999999999999999997 79999999999999999999999999999999999998
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=135.40 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45689999999 889999999999999999999999986 57899999999999999999999999999999999999
Q ss_pred ccCccch
Q 008081 423 REKSRLV 429 (578)
Q Consensus 423 k~K~k~~ 429 (578)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 8776543
No 72
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.2e-15 Score=129.01 Aligned_cols=79 Identities=15% Similarity=0.352 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 343 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~-~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...+..++|||+|| ++ ++++++|+++|++||+|.+|+| +||||||+|.+.++|++|++.||+..++|++|+|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999 77 9999999999999999999999 589999999999999999999999999999999999
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=9.9e-16 Score=138.36 Aligned_cols=82 Identities=27% Similarity=0.279 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 42 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999985 67999999999999999999999999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.+++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998765
No 74
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=128.69 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..+...+|||++| ++++||++|+++|++||+|.+|+|+++ +||||||+|.+.++|+++. . ..+.++|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEcC
Confidence 3466789999999 899999999999999999999999985 8999999999999998532 2 2445679999999998
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
+|..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8754
No 75
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=142.66 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG--~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
...++|||+|| ++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 53 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 53 NRRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ---CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 34679999999 89999999999999999 9999999986 67999999999999999999999999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.++.++.
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9998764
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.2e-15 Score=129.30 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++|+++|+++|++|| |.+|+|+++ +++|||||+|.+.++|++|+ .||+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 355789999999 89999999999999997 999999986 46899999999999999999 899999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987754
No 77
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.7e-15 Score=132.79 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| ++++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 36 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999885 66999999999999999999999999999999999
Q ss_pred eecc
Q 008081 420 KPYR 423 (578)
Q Consensus 420 k~Ak 423 (578)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 78
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=125.58 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||++.|+|+.|+|.++++
T Consensus 7 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 456789999999 8899999999999999999999996 55999999999999999999999999999999999988
Q ss_pred Cccc
Q 008081 425 KSRL 428 (578)
Q Consensus 425 K~k~ 428 (578)
+.+.
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 79
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=2.6e-15 Score=128.99 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 8 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 356789999999 7899999999999999999999986 67999999999999999999999999999999999988
Q ss_pred Cccch
Q 008081 425 KSRLV 429 (578)
Q Consensus 425 K~k~~ 429 (578)
+.+..
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 80
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=132.36 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCee--------EEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--------DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~--------dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I 412 (578)
....++|||+|| ++.+|+++|+++|++||.|. .|+|+.+ +++|||||+|.+.++|++|++.||++.|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 356789999999 79999999999999999999 6999886 6799999999999999999999999999
Q ss_pred cCeEEEEeecccCccc
Q 008081 413 CGARVLVKPYREKSRL 428 (578)
Q Consensus 413 ~Gr~V~Vk~Ak~K~k~ 428 (578)
+|+.|+|.+++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887654
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.2e-16 Score=132.28 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 7 ~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4679999999 889999999999999999999999975 45899999999999999999999999999999999999
Q ss_pred ccCccchh
Q 008081 423 REKSRLVD 430 (578)
Q Consensus 423 k~K~k~~~ 430 (578)
.++.....
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 88766543
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.4e-16 Score=134.96 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++++++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|.|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3579999999 899999999999999999999999985 57999999999999999999 88999999999999998
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 76543
No 83
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=133.87 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC--ceEcCeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~--~~I~Gr~V~Vk~A 422 (578)
.++.++|||+|| +++++|++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.|++ ..|+|++|.|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 466889999999 88999999999999999999999998 699999999999999999998754 5699999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
+++..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87653
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=131.35 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCC------CHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCe-E
Q 008081 346 AGSRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-R 416 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~------tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr-~ 416 (578)
...++|||+|| ++.+ |+++|+++|++||+|.+|+|++. ++||||||+|.+.++|++|+..||+..|+|+ .
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 34689999999 6788 78999999999999999999853 7899999999999999999999999999999 9
Q ss_pred EEEeecccCcc
Q 008081 417 VLVKPYREKSR 427 (578)
Q Consensus 417 V~Vk~Ak~K~k 427 (578)
|+|.++....+
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999986654
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=9.8e-16 Score=133.88 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| +..+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|++..|+|++|+|
T Consensus 22 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 789999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.++++|.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998874
No 86
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=128.34 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
...++|||+|| ++++|+++|+++|++|| |.+|+|+++ +++|||||+|.+.++|++|+ .|++..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45689999999 89999999999999999 999999986 45999999999999999999 999999999999999
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887653
No 87
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=1.4e-15 Score=132.84 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|+..||+..|+|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999 899999999999999999999999986 6799999999999999999999999999999999999876
Q ss_pred Cc
Q 008081 425 KS 426 (578)
Q Consensus 425 K~ 426 (578)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=131.86 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. +++.|+|+.|.|.++
T Consensus 26 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3579999999 889999999999999999999999986 5799999999999999999999 999999999999999
Q ss_pred ccCccc
Q 008081 423 REKSRL 428 (578)
Q Consensus 423 k~K~k~ 428 (578)
+++.+.
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988654
No 89
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=6.9e-16 Score=124.68 Aligned_cols=71 Identities=30% Similarity=0.414 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
+|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++ ++++.|+|++|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5999999 899999999999999999999999885 579999999999999999998 8999999999999985
No 90
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-15 Score=133.07 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
...+..++|||+|| +..+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|++|+
T Consensus 58 ~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456889999999 889999999999999999999999886 6799999999999999999999999999999999
Q ss_pred Eeec
Q 008081 419 VKPY 422 (578)
Q Consensus 419 Vk~A 422 (578)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=124.81 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....++|||+|| ++++|+++|+++|++| .|.+|+|+++ +++|||||+|.+.++|++|++ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 345789999999 8999999999999999 9999999986 669999999999999999999 999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
+.++.+
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987753
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=129.84 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCc
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH 410 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d--------VrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~ 410 (578)
...+..++|||+|| ++++|+++|+++|++||.|.+ |+|+++ ++||||||+|.+.++|++|++.||+.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34466789999999 899999999999999999999 999986 56899999999999999999999999
Q ss_pred eEcCeEEEEeecc
Q 008081 411 FVCGARVLVKPYR 423 (578)
Q Consensus 411 ~I~Gr~V~Vk~Ak 423 (578)
.|+|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.6e-15 Score=134.42 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 355789999999 789999999999999999999999875 569999999999999999999999999999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
++.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998776543
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=130.92 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhc-CCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCce-EcCeEEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSK-FGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-VCGARVLV 419 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~Fsq-fG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~-I~Gr~V~V 419 (578)
....++|||+|| ++++|+++|+++|++ ||+|.+|+|+++ +++|||||+|.+.++|++|++.|++.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356789999999 889999999999999 999999999986 679999999999999999999999999 99999999
Q ss_pred eecccCccc
Q 008081 420 KPYREKSRL 428 (578)
Q Consensus 420 k~Ak~K~k~ 428 (578)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876543
No 95
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-15 Score=127.37 Aligned_cols=82 Identities=28% Similarity=0.352 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|+.. ++.|+|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 455789999999 899999999999999999999999986 5689999999999999999995 689999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
++.++.+..
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 999876543
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=4.1e-15 Score=131.88 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
......++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999 889999999999999999999999986 58999999999999999999999999999999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.+|.++..
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987643
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=128.60 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
..+..++|||+|| ++++++++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3456789999999 899999999999999999998888774 57899999999999999999999999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987653
No 98
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=3e-15 Score=128.85 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|++..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999 899999999999999999999999986 679999999999999999999999999999999999
Q ss_pred ecc
Q 008081 421 PYR 423 (578)
Q Consensus 421 ~Ak 423 (578)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 99
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.1e-15 Score=124.87 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcC--CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~Fsqf--G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
..+..++|||+|| ++.+|+++|+++|++| |.|.+|++ .||||||+|.+.++|++|+..||+..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKK----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEE----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEE----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4466789999999 8899999999999999 99999987 478999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
++++.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988764
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9e-15 Score=124.32 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|+ ++|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|+..|++..|+|++|+|.++++
T Consensus 12 ~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 345789999997 689999999999999999999975 999999999999999999999999999999999999988
Q ss_pred Cccc
Q 008081 425 KSRL 428 (578)
Q Consensus 425 K~k~ 428 (578)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7553
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=3.5e-15 Score=137.34 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
......++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 34 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456789999999 789999999999999999999999986 4689999999999999999999999999999999
Q ss_pred EeecccCcc
Q 008081 419 VKPYREKSR 427 (578)
Q Consensus 419 Vk~Ak~K~k 427 (578)
|.+++++..
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999987654
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=2.5e-15 Score=138.01 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 67 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355789999999 889999999999999999999999986 689999999999999999999999999999999999
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
+++++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99877543
No 103
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=124.74 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||+..|+|++|+|.++++
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 456789999999 8899999999999999999999996 55999999999999999999999999999999999987
Q ss_pred Ccc
Q 008081 425 KSR 427 (578)
Q Consensus 425 K~k 427 (578)
+.+
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=130.53 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCC-eeEEEee-cc----CCCceEEEEECCHHHHHHHHHhCC--CceEcCeEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIP-CQ----QKRMFGFVTFVFAETVKQILAKGN--PHFVCGARV 417 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~-V~dVrI~-~d----ksRGfgFVtF~~~e~A~~Al~~mn--~~~I~Gr~V 417 (578)
...++|||+|| ++++|+++|+++|++||+ |.+|+|+ .+ ++||||||+|.+.++|++|++.|+ +..|+|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999 889999999999999999 9999998 43 689999999999999999999996 589999999
Q ss_pred EEeecccCccch
Q 008081 418 LVKPYREKSRLV 429 (578)
Q Consensus 418 ~Vk~Ak~K~k~~ 429 (578)
+|.+++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 105
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=8.3e-16 Score=131.85 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
....++|||+|| ++++++++|+++|++|| |.+|+|+++ +++|||||+|.+.++|++|+ .|++..|+|+.|.|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456789999999 88999999999999999 999999875 46999999999999999999 89999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=132.17 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCe-eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV-QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V-~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++|++. +++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 355789999999 8999999999999999999 89999986 6899999999999999999998 9999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
++.++..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 107
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-15 Score=138.44 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| +..+|+++|+++|++||.|.+|+|+++ +++|||||+|.+.++|.+|+..||+..|+|++|+|
T Consensus 83 ~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3456789999999 889999999999999999999999875 67999999999999999999999999999999999
Q ss_pred eeccc
Q 008081 420 KPYRE 424 (578)
Q Consensus 420 k~Ak~ 424 (578)
.+|++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 108
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=2.7e-15 Score=137.29 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 69 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3456789999999 889999999999999999999999986 79999999999999999999999999999999999998
Q ss_pred cCc
Q 008081 424 EKS 426 (578)
Q Consensus 424 ~K~ 426 (578)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 109
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=128.35 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCC-eeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-ceEcCeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~-V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~-~~I~Gr~V~Vk~A 422 (578)
.+..++|||+|| ++++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|.++
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 356789999999 899999999999999999 6666553 799999999999999999999999 9999999999999
Q ss_pred ccCccc
Q 008081 423 REKSRL 428 (578)
Q Consensus 423 k~K~k~ 428 (578)
+++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 887553
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=3.7e-15 Score=130.33 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456789999999 8899999999999999999999997 89999999999999999999999999999999999988
Q ss_pred Ccc
Q 008081 425 KSR 427 (578)
Q Consensus 425 K~k 427 (578)
+.+
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=130.57 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCccc
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~k~ 428 (578)
++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++.|++..|+|+.|.|.+++++.+.
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 48999999 789999999999999999999999997 8999999999999999999999999999999999999887643
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=9.1e-16 Score=137.93 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--EEeecc----CCCceEEEEECCHHHHHHHHHhCCCc----eEcC
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCG 414 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d--VrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~----~I~G 414 (578)
....++|||+|| ++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|.+|+..||+. .|+|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 356789999999 899999999999999999976 999987 5899999999999 999999999999 9999
Q ss_pred eEEEEeecccCcc
Q 008081 415 ARVLVKPYREKSR 427 (578)
Q Consensus 415 r~V~Vk~Ak~K~k 427 (578)
++|.|++++++.+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 113
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=1.5e-15 Score=142.02 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+++ +++|||||+|.+.++|.+|+.. +++.|+|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 45689999999 889999999999999999999999986 5699999999999999999998 79999999999999
Q ss_pred cccCccchhh
Q 008081 422 YREKSRLVDR 431 (578)
Q Consensus 422 Ak~K~k~~~r 431 (578)
+.++.+....
T Consensus 180 a~~k~~~~~~ 189 (196)
T 1l3k_A 180 ALSKQEMASA 189 (196)
T ss_dssp CC--------
T ss_pred cCChhHhccc
Confidence 9988765543
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.2e-15 Score=132.12 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|+ .|+++.|+|+.|.|.+++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 889999999999999999999999885 67999999999999999999 899999999999999988
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-15 Score=135.19 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~-~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn--~~~I~Gr~V~Vk~ 421 (578)
.++.++|||+|| +++ +||++|+++|++||+|.+|+|++ +||||||+|++.++|++|++.|+ +..|+||+|+|.+
T Consensus 22 ~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456889999999 787 99999999999999999999987 89999999999999999999874 5679999999999
Q ss_pred cccCccc
Q 008081 422 YREKSRL 428 (578)
Q Consensus 422 Ak~K~k~ 428 (578)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876543
No 116
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.9e-15 Score=125.17 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.....++|||+|| ++++|+++|+++|++||.| +|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 3456889999999 8899999999999999987 55554 789999999999999999999999999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
+++++.+
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988754
No 117
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=128.00 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d-VrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++||++|+++|++||.|.+ |+|+++ +++|||||+|.+.++|++|++. ++..|+||.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999 899999999999999999998 999875 7899999999999999999999 9999999999999
Q ss_pred ecccC
Q 008081 421 PYREK 425 (578)
Q Consensus 421 ~Ak~K 425 (578)
++.++
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87654
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.9e-16 Score=127.22 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
+..++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.++|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999 899999999999999999999999986 5699999999999999999999999999999998876
Q ss_pred cc
Q 008081 422 YR 423 (578)
Q Consensus 422 Ak 423 (578)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 119
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.4e-15 Score=127.98 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.+..++|||+|| ++++|+++|+++|++||.|.+++++.+ +++|||||+|.+.++|++|++.||++.|+|++|+|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 899999999999999999998888874 678999999999999999999999999999999999
Q ss_pred ecc
Q 008081 421 PYR 423 (578)
Q Consensus 421 ~Ak 423 (578)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 120
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=131.47 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.++...
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3579999999 88999999999999999999999987 8999999999999999999999999999999999998764
No 121
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.9e-15 Score=128.43 Aligned_cols=78 Identities=15% Similarity=0.405 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.+..++|||+|| ++ .+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|++..++|++|.|.+++
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 466889999999 77 99999999999999999999994 8999999999999999999999999999999999998
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
++.+
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 122
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.8e-15 Score=129.80 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCe----eEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V----~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.+..++|||+|| ++.+|+++|+++|++||.| ..+++..++++|||||+|.+.++|++|++.|++..|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456789999999 8899999999999999999 67777766889999999999999999999999999999999999
Q ss_pred ecccCccc
Q 008081 421 PYREKSRL 428 (578)
Q Consensus 421 ~Ak~K~k~ 428 (578)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=5.4e-16 Score=129.54 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
++|||+|| +.++++++|+++|++||+|.+|+|+++ +++|||||+|.+.+ |++|+..||+..|+|+.|+|.+|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999 889999999999999999999999985 56999999999999 9999999999999999999999987
Q ss_pred Ccc
Q 008081 425 KSR 427 (578)
Q Consensus 425 K~k 427 (578)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 124
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=123.34 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
++|||+|| ++++++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.++ +.++|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 889999999999999999999999885 569999999999999999999998 9999999999987
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=124.26 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=65.5
Q ss_pred CcEEEEcCCCCCCC------CHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEE
Q 008081 348 SRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVL 418 (578)
Q Consensus 348 ~rtIyVg~L~~~~~------tEedLr~~FsqfG~V~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr-~V~ 418 (578)
.++|||+|| ++.+ |+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ +|+
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 368999999 7778 78999999999999999999863 7899999999999999999999999999999 887
Q ss_pred E
Q 008081 419 V 419 (578)
Q Consensus 419 V 419 (578)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 126
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=6e-15 Score=137.58 Aligned_cols=84 Identities=11% Similarity=0.147 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++.+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.+.|++|++.||+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999 789999999999999999999999986 4689999999999999999999999999999999999
Q ss_pred cccCccchh
Q 008081 422 YREKSRLVD 430 (578)
Q Consensus 422 Ak~K~k~~~ 430 (578)
+.++.....
T Consensus 149 a~~~~~~~~ 157 (165)
T 1rk8_A 149 CFVKGPKRV 157 (165)
T ss_dssp SEECC----
T ss_pred ecCCCCCCC
Confidence 988765443
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=2.1e-15 Score=137.13 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 44 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999 889999999999999999999999875 679999999999999999999999999999999999
Q ss_pred ecccCccch
Q 008081 421 PYREKSRLV 429 (578)
Q Consensus 421 ~Ak~K~k~~ 429 (578)
+++++.+..
T Consensus 123 ~a~~~~~~~ 131 (135)
T 2lea_A 123 MARYGRPPD 131 (135)
T ss_dssp ECCCCCCCT
T ss_pred ECCCCCCCc
Confidence 998776543
No 128
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=131.58 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCCcEEEE--cCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE-----cCeEEE
Q 008081 346 AGSRQIYL--TFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV-----CGARVL 418 (578)
Q Consensus 346 ~~~rtIyV--g~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I-----~Gr~V~ 418 (578)
.++++||| ||| ++.+||++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.||+..| .|+.|.
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 45789999 889 89999999999999999999999987 699999999999999999999999999 799999
Q ss_pred EeecccCc
Q 008081 419 VKPYREKS 426 (578)
Q Consensus 419 Vk~Ak~K~ 426 (578)
|.+++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987544
No 129
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=3.8e-15 Score=132.10 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~---V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
...++|||+|| ++++||++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ++++.|+||.|+|
T Consensus 15 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999 899999999999999999 899999986 679999999999999999999 7999999999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 130
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=8.4e-15 Score=127.27 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~-~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
+..++|||+|| ++. +|+++|+++|++||+|.+|+| ++|||||+|.+.++|++|++.|++..|+|+.|+|.++++
T Consensus 25 ~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44689999999 788 999999999999999999999 689999999999999999999999999999999999985
Q ss_pred Cc
Q 008081 425 KS 426 (578)
Q Consensus 425 K~ 426 (578)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.8e-15 Score=129.21 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
..+|||+|| ++++||++|+++|++| .|.+|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|.|..+.+
T Consensus 16 ~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 469999999 8999999999999999 8999999986 68999999999999999999 5799999999999998865
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-15 Score=129.30 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++++|+++|+++|++||.|.. .++.+ ++||||||+|.+.++|++|++ ||+..|+|+.|.|.+
T Consensus 15 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 45789999999 899999999999999999988 55554 789999999999999999999 999999999999999
Q ss_pred cccCccc
Q 008081 422 YREKSRL 428 (578)
Q Consensus 422 Ak~K~k~ 428 (578)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9887543
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=4e-15 Score=136.49 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~---V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
....++|||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ +|+..|+||.|+
T Consensus 41 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345679999999 899999999999999999 899999986 679999999999999999999 899999999999
Q ss_pred EeecccC
Q 008081 419 VKPYREK 425 (578)
Q Consensus 419 Vk~Ak~K 425 (578)
|.++.++
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998654
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=6.8e-15 Score=124.25 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++.+|+++|+++|++||.|..+ ...++++|||||+|.+.++|++|++.|++..|+|+.|.|.++.+
T Consensus 13 ~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 345789999999 8999999999999999999887 33347899999999999999999999999999999999999988
Q ss_pred Ccc
Q 008081 425 KSR 427 (578)
Q Consensus 425 K~k 427 (578)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 135
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=122.84 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEE-eeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVr-I~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
...++|||+|| ++++|+++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|+..||+..|+|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 44689999999 89999999999999999999995 88887777799999999999999999999999999999999988
Q ss_pred C
Q 008081 425 K 425 (578)
Q Consensus 425 K 425 (578)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=2.6e-15 Score=121.06 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
||||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++. +++.|+|++|.|++|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999 889999999999999999999999885 6799999999999999999997 899999999999875
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.5e-15 Score=122.47 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
...++|||+|| ++++|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|++|+.. ...++|++|.|.++.++
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 34689999999 899999999999999999999999985 899999999999999875433 46679999999999887
Q ss_pred ccc
Q 008081 426 SRL 428 (578)
Q Consensus 426 ~k~ 428 (578)
...
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 138
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=126.66 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceE--------cC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV--------CG 414 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I--------~G 414 (578)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..| .+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999 889999999999999999999999986 5689999999999999999999999999 57
Q ss_pred eEEEEeecccC
Q 008081 415 ARVLVKPYREK 425 (578)
Q Consensus 415 r~V~Vk~Ak~K 425 (578)
+.|.|+++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998865
No 139
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=130.18 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~---V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
.....+|||+|| ++++|+++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ++++.|+||.|+
T Consensus 8 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345779999999 899999999999999998 999999986 689999999999999999999 899999999999
Q ss_pred EeecccCc
Q 008081 419 VKPYREKS 426 (578)
Q Consensus 419 Vk~Ak~K~ 426 (578)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987653
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.3e-14 Score=121.43 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccCc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K~ 426 (578)
..++|||+|| ++++++++|+++|++| +|.+|+|. ++||||||+|.+.++|++|++.||+..++|++|+|.++..+.
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4679999999 8999999999999999 99999996 499999999999999999999999999999999999986553
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=5e-15 Score=126.62 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
..++|||+|| ++++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++ +++.++|+.|.|.++.
T Consensus 8 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4679999999 899999999999999999999999986 578999999999999999999 8999999999999998
Q ss_pred cCccch
Q 008081 424 EKSRLV 429 (578)
Q Consensus 424 ~K~k~~ 429 (578)
++....
T Consensus 85 ~~~~~~ 90 (102)
T 2xs2_A 85 RKQNLS 90 (102)
T ss_dssp ECC---
T ss_pred cCcchh
Confidence 876544
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.2e-15 Score=127.40 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
....++|||+|| ++++||++|+++|++||.| +|+|++| ++||||||+|.+.++|++|++ +|++.|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345679999999 8999999999999999954 9999986 679999999999999999995 699999999999998
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 143
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=5.6e-15 Score=145.87 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG--~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
..++|||+|| ++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4669999999 89999999999999999 9999999987 679999999999999999999999999999999999
Q ss_pred ecccCc
Q 008081 421 PYREKS 426 (578)
Q Consensus 421 ~Ak~K~ 426 (578)
+++++.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998654
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=9.3e-15 Score=132.65 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeec-cCCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d--------VrI~~-dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
....++|||+|| ++.+|+++|+++|++||.|.. |++.. ++++|||||+|.+.++|.+|+..||+..|+|+
T Consensus 42 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 456789999999 899999999999999999876 44443 47899999999999999999999999999999
Q ss_pred EEEEeecccCccch
Q 008081 416 RVLVKPYREKSRLV 429 (578)
Q Consensus 416 ~V~Vk~Ak~K~k~~ 429 (578)
.|.|.+++++....
T Consensus 121 ~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 121 PMVVQFARSARPKQ 134 (143)
T ss_dssp ECEEEECCCSCC--
T ss_pred EEEEEECCCCCCcc
Confidence 99999998765443
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-15 Score=133.25 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++|+++|+++|++||.|.++.++.+ +++|||||+|.+.++|++|++ ||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999 899999999999999999998555442 679999999999999999999 89999999999999
Q ss_pred ecccCc
Q 008081 421 PYREKS 426 (578)
Q Consensus 421 ~Ak~K~ 426 (578)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998764
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=121.28 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
...++|||+|| ++++|+++|+++|++||+|.+|.+-....+ ||||+|.+.++|++|++ |+++.|+|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 45679999999 899999999999999999999822222233 99999999999999999 9999999999999998766
Q ss_pred cc
Q 008081 426 SR 427 (578)
Q Consensus 426 ~k 427 (578)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 147
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=3.6e-15 Score=136.32 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEc---CeEEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARVLV 419 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~---Gr~V~V 419 (578)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..+. |++|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 45779999999 889999999999999999999999986 56999999999999999999999998775 499999
Q ss_pred eec
Q 008081 420 KPY 422 (578)
Q Consensus 420 k~A 422 (578)
.+|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=2.3e-14 Score=135.82 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEeecccC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 425 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G--r~V~Vk~Ak~K 425 (578)
..+|||+|| ++.+|+++|+++|++||+|.+|+|..+++||||||+|.+.++|++|++.||+..|.| ++|+|.+++++
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 348999999 899999999999999999999999876678999999999999999999999999966 99999999887
Q ss_pred c
Q 008081 426 S 426 (578)
Q Consensus 426 ~ 426 (578)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 149
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=3.4e-14 Score=137.65 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCC-CCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 346 AGSRQIYLTFPAE-STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 346 ~~~rtIyVg~L~~-~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
+..++|||+|| + +.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|++|++.||+..+.|+.|+|.+++.
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56789999999 6 89999999999999999999999986 689999999999999999999999999999999999875
Q ss_pred Cc
Q 008081 425 KS 426 (578)
Q Consensus 425 K~ 426 (578)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 150
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=121.09 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
......++|||+|| ++.+|+++|+++|++|+ +|+++.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34466789999999 88999999999999885 5556654 5689999999999999999999999999999999
Q ss_pred EeecccCccc
Q 008081 419 VKPYREKSRL 428 (578)
Q Consensus 419 Vk~Ak~K~k~ 428 (578)
|.+++++.+.
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987653
No 151
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=2.2e-14 Score=128.31 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|+ ++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 36 ~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 345789999997 589999999999999999999985 999999999999999999999999999999999999988
Q ss_pred Cccc
Q 008081 425 KSRL 428 (578)
Q Consensus 425 K~k~ 428 (578)
+...
T Consensus 111 ~~~~ 114 (121)
T 2bz2_A 111 QPML 114 (121)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7543
No 152
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=3.9e-14 Score=117.06 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fsqf----G-------~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
...++|||+|| ++++|+++|+++|++| | +|.+|++++ .||||||+|.+.++|++|+ .||+..|+|
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 34689999999 8999999999999999 8 999999988 6999999999999999999 999999999
Q ss_pred eEEEEee
Q 008081 415 ARVLVKP 421 (578)
Q Consensus 415 r~V~Vk~ 421 (578)
+.|+|.+
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 153
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-15 Score=133.45 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEc
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~d--------VrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~ 413 (578)
+..++|||+|| ++++++++|+++|++||+|.+ |+|+++ ++||||||+|.+.++|++|++.||+..|+
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 56789999999 899999999999999999999 889886 67999999999999999999999999999
Q ss_pred CeEEEEeecccCccc
Q 008081 414 GARVLVKPYREKSRL 428 (578)
Q Consensus 414 Gr~V~Vk~Ak~K~k~ 428 (578)
|+.|.|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887543
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=4.4e-14 Score=136.15 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
.+.+||||||| ++++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 13 ~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45689999999 899999999999999999999999986 6799999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876543
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=5.6e-14 Score=127.84 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
+.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.+++..++|++|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4689999999 789999999999999999999999885 47899999999999999999999999999999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=8.1e-14 Score=126.13 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=73.6
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999 789999999999999999999999985 467999999999999999999999999999999999998
Q ss_pred cCcc
Q 008081 424 EKSR 427 (578)
Q Consensus 424 ~K~k 427 (578)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7654
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=130.19 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCe----eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V----~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
....+|||+|| ++++||++|+++|++||+| .+|+|+++ ++||||||+|.+.++|++|++. +++.|+||.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 34579999999 8999999999999999986 69999985 7899999999999999999998 99999999999
Q ss_pred EeecccC
Q 008081 419 VKPYREK 425 (578)
Q Consensus 419 Vk~Ak~K 425 (578)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.7e-14 Score=126.99 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
|+|||+|| +.++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++.++
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 68999999 899999999999999999999999886 57899999999999999999999999999999999998766
Q ss_pred cc
Q 008081 426 SR 427 (578)
Q Consensus 426 ~k 427 (578)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=2.4e-14 Score=126.25 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE-----EEEee
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR-----VLVKP 421 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~-----V~Vk~ 421 (578)
...+|||+|| ++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++|++.||+..|+|++ |+|..
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 3579999999 899999999999999999999999885 99999999999999999999999999998 77777
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
+.++.
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66543
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=1.4e-14 Score=133.32 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
...++|||+|| ++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|.|.++
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 44679999999 89999999999999999 779999986 78999999999999999999 77999999999999998
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
.++..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=8e-14 Score=132.50 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.....++|||+|| ++.+++++|+++|++||+|++|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455789999999 899999999999999999999999985 679999999999999999999999999999999999
Q ss_pred ecccCc
Q 008081 421 PYREKS 426 (578)
Q Consensus 421 ~Ak~K~ 426 (578)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987654
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=5e-14 Score=128.29 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++ +++..|+|++|.|.+|
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3679999999 889999999999999999999999985 679999999999999999998 7999999999999999
Q ss_pred ccC
Q 008081 423 REK 425 (578)
Q Consensus 423 k~K 425 (578)
.+|
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 886
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=1.5e-13 Score=125.65 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCce-EEEEECCHHHHHHHHHhCCCceEcC--eEEEEeecccC
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 425 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGf-gFVtF~~~e~A~~Al~~mn~~~I~G--r~V~Vk~Ak~K 425 (578)
-+|||+|| ++.+|+++|+++|++||+|.+|+|+.+ .+|| |||+|.+.++|++|++.||+..|.| +.|+|.+++++
T Consensus 29 L~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 48999999 899999999999999999999998764 5788 9999999999999999999999998 99999999876
Q ss_pred c
Q 008081 426 S 426 (578)
Q Consensus 426 ~ 426 (578)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.4e-13 Score=124.62 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCce-EEEEECCHHHHHHHHHhCCCceEcC--eEEEEeecccCc
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREKS 426 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGf-gFVtF~~~e~A~~Al~~mn~~~I~G--r~V~Vk~Ak~K~ 426 (578)
.|||+|| ++.+|+++|+++|++||+|.+|+|+. ..|| |||+|.+.++|..|++.||+..|.| +.|+|.+|+++.
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999 89999999999999999999999976 3597 9999999999999999999999988 699999998875
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=5e-14 Score=127.81 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCee--EEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--DVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~--dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
...++|||+|| ++++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 45679999999 8999999999999999 577 9999986 7899999999999999999997 7799999999999
Q ss_pred ecccC
Q 008081 421 PYREK 425 (578)
Q Consensus 421 ~Ak~K 425 (578)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87643
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=1.6e-13 Score=128.23 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 789999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
++++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988764
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=120.08 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d-------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
...++|||+|| ++++|+++|+++|++||+|. +.++.+ ++||||||+|.+.++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 45789999999 89999999999999999999 888774 56999999999999999999998 468999888
Q ss_pred EeecccC
Q 008081 419 VKPYREK 425 (578)
Q Consensus 419 Vk~Ak~K 425 (578)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8765543
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=2e-13 Score=127.49 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++. +++.|+|+.|.|.
T Consensus 10 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345789999999 889999999999999999999999986 4689999999999999999988 9999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
++.++..
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9877643
No 169
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=2.4e-13 Score=146.33 Aligned_cols=83 Identities=16% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
.....++|||+|| ++.+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|.+||..||++.|+|+.|.|
T Consensus 98 ~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 98 QGDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 899999999999999999999999986 57999999999999999999999999999999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.++.++..
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987643
No 170
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=7.5e-14 Score=139.46 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 008081 344 IVAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~-~tEedLr~~FsqfG~V~dVrI~~d-----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V 417 (578)
.....++|||+|| ++. +|+++|+++|++||.|.+|+|+++ +++|||||+|.+.++|.+|+ .||+..|+|+.|
T Consensus 206 ~~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 206 ATLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp -CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 3456789999999 788 999999999999999999999885 45999999999999999999 999999999999
Q ss_pred EEeecccCc
Q 008081 418 LVKPYREKS 426 (578)
Q Consensus 418 ~Vk~Ak~K~ 426 (578)
.|.++++|.
T Consensus 284 ~V~~a~~k~ 292 (292)
T 2ghp_A 284 SVSLADKKP 292 (292)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998873
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=1.7e-13 Score=129.88 Aligned_cols=81 Identities=15% Similarity=0.312 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| +..+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 45689999999 789999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987743
No 172
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=3.2e-13 Score=118.34 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCC----CCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 345 VAGSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~----~~tEedLr~~FsqfG~V~dVrI~~d-----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
..++++|+|.|+... +-++++|++.|++||+|++|+|+++ ++||||||+|.+.++|.+|++.||+..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 456889999999321 2378999999999999999999975 5699999999999999999999999999999
Q ss_pred EEEEeeccc
Q 008081 416 RVLVKPYRE 424 (578)
Q Consensus 416 ~V~Vk~Ak~ 424 (578)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 173
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=1.5e-13 Score=133.76 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 343 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~-~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...+..++|||+|| ++ ++++++|+++|++||+|.+|+|++++ +|||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 29 ~~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44567899999999 67 99999999999999999999999975 89999999999999999999999999999999999
Q ss_pred cccCc
Q 008081 422 YREKS 426 (578)
Q Consensus 422 Ak~K~ 426 (578)
+.++.
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 98653
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=1.6e-13 Score=125.49 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..|+|++|.|.+
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44789999999 789999999999999999999999886 4589999999999999999999999999999999998
Q ss_pred c
Q 008081 422 Y 422 (578)
Q Consensus 422 A 422 (578)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 175
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.8e-13 Score=116.63 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCC-----------CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceE
Q 008081 344 IVAGSRQIYLTFPAESTF-----------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~-----------tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I 412 (578)
....+++|+|.|+ -... ++++|+++|++||+|.+|.|+...+||||||+|.+.++|++|+..||+..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456899999999 2222 268999999999999999774436899999999999999999999999999
Q ss_pred cCeEEEEeecccCcc
Q 008081 413 CGARVLVKPYREKSR 427 (578)
Q Consensus 413 ~Gr~V~Vk~Ak~K~k 427 (578)
+|+.|.|.++.++.+
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987654
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.43 E-value=1.8e-13 Score=123.89 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeE--EE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--VL 418 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~--V~ 418 (578)
....++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..++|+. |.
T Consensus 85 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 85 SIRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp GGTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 345689999999 789999999999999999999999886 46899999999999999999999999999975 88
Q ss_pred Eeec
Q 008081 419 VKPY 422 (578)
Q Consensus 419 Vk~A 422 (578)
|.+|
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8875
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=4.3e-13 Score=133.31 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr----~~FsqfG~V~dVrI~~d-ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
....++|||+|| ++++|+++|+ ++|++||+|.+|+|++. ++||||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 456889999999 8999999977 89999999999999874 78999999999999999999999999999999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99976654
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.42 E-value=3e-13 Score=128.18 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.+++..|+|+.|.|.++
T Consensus 27 ~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3579999999 889999999999999999999999886 58999999999999999999999999999999999998
Q ss_pred ccCccch
Q 008081 423 REKSRLV 429 (578)
Q Consensus 423 k~K~k~~ 429 (578)
..+....
T Consensus 106 ~~~~~~~ 112 (216)
T 2qfj_A 106 SNIGQAQ 112 (216)
T ss_dssp SCCGGGH
T ss_pred CCccccc
Confidence 7765443
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=3.8e-13 Score=129.39 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 479999999 789999999999999999999999985 67999999999999999999885 4699999999998664
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=117.09 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=70.0
Q ss_pred CCCCcE-EEEcCCCCCCCCHHH----HHHHhhcC-CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008081 345 VAGSRQ-IYLTFPAESTFTEQD----VSNYFSKF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (578)
Q Consensus 345 ~~~~rt-IyVg~L~~~~~tEed----Lr~~Fsqf-G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~ 418 (578)
.+++.| |||+|| ++.+++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|++..+.||.|+
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 355666 999999 89999988 55899999 599999 349999999999999999999999999999999
Q ss_pred EeecccCccchh
Q 008081 419 VKPYREKSRLVD 430 (578)
Q Consensus 419 Vk~Ak~K~k~~~ 430 (578)
|.+|+.+.+...
T Consensus 78 v~~A~~~sd~~~ 89 (96)
T 2diu_A 78 VSFTPKNRELCE 89 (96)
T ss_dssp EESSCCSCCCCC
T ss_pred EEecCCCcceeE
Confidence 999998876654
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=4.6e-13 Score=123.27 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++.+|+++|+++|++||.|..+ ...++++|||||+|.+.++|.+|+..|++..|+|+.|.|.++.+
T Consensus 96 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 345789999999 7899999999999999999887 33347899999999999999999999999999999999999988
Q ss_pred Cc
Q 008081 425 KS 426 (578)
Q Consensus 425 K~ 426 (578)
|.
T Consensus 174 k~ 175 (175)
T 1fje_B 174 KG 175 (175)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.39 E-value=4e-13 Score=122.72 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEc---CeEE
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARV 417 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~---Gr~V 417 (578)
..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4679999999 899999999999999999999999986 47899999999999999999999998776 6888
Q ss_pred EEeecccCcc
Q 008081 418 LVKPYREKSR 427 (578)
Q Consensus 418 ~Vk~Ak~K~k 427 (578)
.|.++..+..
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888765543
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=4.6e-13 Score=121.87 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++. ++.++|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4679999999 899999999999999999999999985 6799999999999999999996 58999999999998
Q ss_pred ccCc
Q 008081 423 REKS 426 (578)
Q Consensus 423 k~K~ 426 (578)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=2.8e-13 Score=127.63 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCC-CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccC
Q 008081 347 GSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (578)
Q Consensus 347 ~~rtIyVg~L~~~-~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~K 425 (578)
..++|||+|| ++ .+++++|+++|++||+|.+|+|++++ +|||||+|.+.++|++|++.|++..|+|+.|.|.++..+
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 3579999999 67 99999999999999999999999964 899999999999999999999999999999999999866
Q ss_pred c
Q 008081 426 S 426 (578)
Q Consensus 426 ~ 426 (578)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=1.1e-12 Score=130.38 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEeec
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~-Gr~V~Vk~A 422 (578)
..+..++|||+|| +..+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.||+..|+ |+.|+|.|+
T Consensus 203 ~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 203 ENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3456789999999 7899999999999999999999999853 699999999999999999999999999 999999998
Q ss_pred c
Q 008081 423 R 423 (578)
Q Consensus 423 k 423 (578)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=5e-13 Score=132.75 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhC-CCceEc---CeEEEE
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKG-NPHFVC---GARVLV 419 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~m-n~~~I~---Gr~V~V 419 (578)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|+..| ++.++. |+.|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999 789999999999999999999999986 67999999999999999999999 566665 999999
Q ss_pred eecccCc
Q 008081 420 KPYREKS 426 (578)
Q Consensus 420 k~Ak~K~ 426 (578)
.++.++.
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998653
No 187
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=1.1e-12 Score=119.19 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEE
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVL 418 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G--r~V~ 418 (578)
....++|||+|| +..+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.|++..++| ++|+
T Consensus 86 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 356789999999 789999999999999999999999885 468999999999999999999999999988 9999
Q ss_pred Eeec
Q 008081 419 VKPY 422 (578)
Q Consensus 419 Vk~A 422 (578)
|.+|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9876
No 188
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=7.2e-13 Score=121.41 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=64.7
Q ss_pred cEEEEcCC----CCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECC----HHH----HHHHHH--hCCCc
Q 008081 349 RQIYLTFP----AESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVF----AET----VKQILA--KGNPH 410 (578)
Q Consensus 349 rtIyVg~L----~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~----~e~----A~~Al~--~mn~~ 410 (578)
.+|||++| + +.++|++|++||++||+|.+|.++.| ++||||||+|.+ ++. |.+|+. .+|+.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 5 78999999999999999999999997 789999999996 333 889988 78999
Q ss_pred eEcCeEEEEee
Q 008081 411 FVCGARVLVKP 421 (578)
Q Consensus 411 ~I~Gr~V~Vk~ 421 (578)
.|+||+|+|+.
T Consensus 82 ~I~Gr~irV~l 92 (136)
T 2j8a_A 82 FIMGFKFEVIL 92 (136)
T ss_dssp EETTEEEEEEE
T ss_pred eecCcEEEEEE
Confidence 99999999986
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.35 E-value=1.8e-12 Score=128.99 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCC-CHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 345 VAGSRQIYLTFPAESTF-TEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~-tEedLr~~FsqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
....++|||+|| ++.+ |+++|+++|++||.|.+|+|+++ +++|||||+|.+.++|.+|+..||+..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 356789999999 7774 99999999999999999999985 679999999999999999999999999999999999
Q ss_pred ecccCccchhh
Q 008081 421 PYREKSRLVDR 431 (578)
Q Consensus 421 ~Ak~K~k~~~r 431 (578)
++.++......
T Consensus 260 ~a~~~~~~~~~ 270 (284)
T 3smz_A 260 FCAPGPPGRSM 270 (284)
T ss_dssp ECCSSSCHHHH
T ss_pred EecCCCcccch
Confidence 99988765443
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=2.4e-12 Score=127.87 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
....++|||+|| ++++|+++|+++|++||+|.+|+|.+ +||||||+|.+.++|++|+..+++..|+|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 455679999999 89999999999999999999999987 799999999999999999999999999999999999876
Q ss_pred Cc
Q 008081 425 KS 426 (578)
Q Consensus 425 K~ 426 (578)
..
T Consensus 96 ~~ 97 (261)
T 3sde_A 96 GA 97 (261)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.33 E-value=2.6e-12 Score=120.05 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fsqf----G-------~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
...++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .||+..|+|
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 35789999999 8999999999999999 6 788888766 8999999999999999999 889999999
Q ss_pred eEEEEeecccCc
Q 008081 415 ARVLVKPYREKS 426 (578)
Q Consensus 415 r~V~Vk~Ak~K~ 426 (578)
+.|.|.++..+.
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987664
No 192
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.33 E-value=3.2e-12 Score=116.88 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~Fsqf----G-------~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
..++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .++++.++|+
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 4689999999 8999999999999999 7 889998877 8999999999999999999 8899999999
Q ss_pred EEEEeecccCc
Q 008081 416 RVLVKPYREKS 426 (578)
Q Consensus 416 ~V~Vk~Ak~K~ 426 (578)
.|.|.++....
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999876543
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=1.2e-12 Score=120.38 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~---dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
.....++|||+|| ++++|+++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999 88999999999999999877632222 3789999999999999999995 89999999999999
Q ss_pred ecccCcc
Q 008081 421 PYREKSR 427 (578)
Q Consensus 421 ~Ak~K~k 427 (578)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=3.2e-12 Score=120.38 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~-Gr~V~Vk~A 422 (578)
.++.++|||+|| +..+++++|+++|++|| +|.+|+|+.+ .+|||||+|.+.++|.+|+..|++..|+ |+.|.|.++
T Consensus 117 ~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 117 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 456889999999 78999999999999999 9999999663 6899999999999999999999999999 999999998
Q ss_pred ccC
Q 008081 423 REK 425 (578)
Q Consensus 423 k~K 425 (578)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.30 E-value=4.4e-12 Score=123.45 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEeec
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~-Gr~V~Vk~A 422 (578)
.+..++|||+|| ++.+++++|+++|++|| +|.+|+|+.+ .+|||||+|.+.++|.+|++.|++..|+ |+.|+|.++
T Consensus 148 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 355789999999 78999999999999999 9999999552 6899999999999999999999999999 999999998
Q ss_pred ccC
Q 008081 423 REK 425 (578)
Q Consensus 423 k~K 425 (578)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 196
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=106.77 Aligned_cols=79 Identities=10% Similarity=0.229 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCC------CCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008081 346 AGSRQIYLTFPAE------STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (578)
Q Consensus 346 ~~~rtIyVg~L~~------~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~V 419 (578)
...++|-|..... ..+||++|+++|++||+|.+|+|+. ++||||||+|.+.++|+.|++.+++ +.|+.|+|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 3455666666422 4589999999999999999999984 6899999999999999999999544 68999999
Q ss_pred eecccCcc
Q 008081 420 KPYREKSR 427 (578)
Q Consensus 420 k~Ak~K~k 427 (578)
.|++++..
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99987754
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=7.4e-12 Score=109.53 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCC-CCC--------CHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCC
Q 008081 345 VAGSRQIYLTFPAE-STF--------TEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNP 409 (578)
Q Consensus 345 ~~~~rtIyVg~L~~-~~~--------tEedLr~~FsqfG~V~dVrI~~d------ksRGfgFVtF~~~e~A~~Al~~mn~ 409 (578)
+.+++.|.|.|+-. .++ .+++|++.|++||+|++|+|+++ +++|||||+|.+.++|++|+..||+
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35688899999732 122 34799999999999999999986 3689999999999999999999999
Q ss_pred ceEcCeEEEEeecccC
Q 008081 410 HFVCGARVLVKPYREK 425 (578)
Q Consensus 410 ~~I~Gr~V~Vk~Ak~K 425 (578)
..++||.|.|.++.+.
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999987643
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=9.2e-12 Score=123.83 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d----ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45679999999 899999999999999999999999875 5789999999999999999999999999999999999
Q ss_pred cccCcc
Q 008081 422 YREKSR 427 (578)
Q Consensus 422 Ak~K~k 427 (578)
+.++..
T Consensus 172 a~~~~~ 177 (284)
T 3smz_A 172 TDAGQL 177 (284)
T ss_dssp CCGGGC
T ss_pred CCCCCC
Confidence 987653
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.4e-12 Score=113.83 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=59.7
Q ss_pred EcCCCCCCCCHHHHHHHh------------hcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 008081 353 LTFPAESTFTEQDVSNYF------------SKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (578)
Q Consensus 353 Vg~L~~~~~tEedLr~~F------------sqfG~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V 417 (578)
+++| ++.+++++|+++| ++||+|.+|+|+++ ++||||||+|.+.++|++|+..||+..++||.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 4555 5566777776666 99999999999986 579999999999999999999999999999999
Q ss_pred EEeec
Q 008081 418 LVKPY 422 (578)
Q Consensus 418 ~Vk~A 422 (578)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=1.1e-11 Score=123.61 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG-~V~dVrI~~d---ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
..++|||+|| ++.+|+++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 5789999999 88999999999999999 9999999886 58999999999999999999999999999999999999
Q ss_pred ccCcc
Q 008081 423 REKSR 427 (578)
Q Consensus 423 k~K~k 427 (578)
.++.+
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 87654
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.23 E-value=7.3e-12 Score=121.27 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCe--eEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCceEcCe----E
Q 008081 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV--QDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA----R 416 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V--~dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr----~ 416 (578)
.++.++|||+|| ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 120 ~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 356789999999 8899999999999999999 89999886 4579999999999999999999999999987 4
Q ss_pred EEEeec
Q 008081 417 VLVKPY 422 (578)
Q Consensus 417 V~Vk~A 422 (578)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=2.2e-11 Score=127.66 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCCCCCcEEEEcCCC-CCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc---Ce--E
Q 008081 343 GIVAGSRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC---GA--R 416 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~-~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~---Gr--~ 416 (578)
....++++|||||+. ++.+||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 445778999999941 67899999999999999999999987 8999999999999999999999999883 55 5
Q ss_pred EEEeecc
Q 008081 417 VLVKPYR 423 (578)
Q Consensus 417 V~Vk~Ak 423 (578)
+.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777764
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=2.2e-11 Score=108.50 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCC---------CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 008081 346 AGSRQIYLTFPAEST---------FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~---------~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~ 416 (578)
.+++.|.+.|+-... -.++||++.|++||+|++|.|+++..+|||||+|.+.++|++|++.|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356778888873221 12468999999999999999998878999999999999999999999999999999
Q ss_pred EEEeecccC
Q 008081 417 VLVKPYREK 425 (578)
Q Consensus 417 V~Vk~Ak~K 425 (578)
|.|.++.+.
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998644
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=1.4e-11 Score=110.36 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCC----CCCHHHHHHHhhcCCCeeEEEeeccC--------CCceEEEEECCHHHHHHHHHhCCCceEc
Q 008081 346 AGSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQQ--------KRMFGFVTFVFAETVKQILAKGNPHFVC 413 (578)
Q Consensus 346 ~~~rtIyVg~L~~~----~~tEedLr~~FsqfG~V~dVrI~~dk--------sRGfgFVtF~~~e~A~~Al~~mn~~~I~ 413 (578)
++++.|+|.|+-.. +-.++||++.|++||+|.+|+|++++ ++|||||+|.+.++|.+|+..||+..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 46789999998321 22479999999999999999999862 4699999999999999999999999999
Q ss_pred CeEEEEeeccc
Q 008081 414 GARVLVKPYRE 424 (578)
Q Consensus 414 Gr~V~Vk~Ak~ 424 (578)
||.|.|.++.+
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999754
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=93.50 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEcCCCC---C-CCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008081 343 GIVAGSRQIYLTFPAE---S-TFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~---~-~~tE---edLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr 415 (578)
..+|+..||+|.-.+. . .+.+ .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+|++ ||+..++||
T Consensus 2 ~~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4678888999988631 1 2342 6799999999999999998854 8999999999999998 899999999
Q ss_pred EEEEeecccCc
Q 008081 416 RVLVKPYREKS 426 (578)
Q Consensus 416 ~V~Vk~Ak~K~ 426 (578)
.|+|+.+.+..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999987653
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2e-08 Score=87.03 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcCCCCC------CCCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEc
Q 008081 343 GIVAGSRQIYLTFPAES------TFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (578)
Q Consensus 343 ~~~~~~rtIyVg~L~~~------~~tE---edLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~ 413 (578)
..+|+.-||+|.-+ ++ .+.+ .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+|++ ||+..|+
T Consensus 10 ~~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 10 FQGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET
T ss_pred ecCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC
Confidence 56789999999987 32 2332 5689999999999999999965 9999999999999999 8999999
Q ss_pred CeEEEEee
Q 008081 414 GARVLVKP 421 (578)
Q Consensus 414 Gr~V~Vk~ 421 (578)
||.|+|+.
T Consensus 84 Gr~L~V~~ 91 (95)
T 1ufw_A 84 GRAVKISG 91 (95)
T ss_dssp TEEEEEEC
T ss_pred CeEEEEec
Confidence 99999986
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=1.1e-07 Score=85.93 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=67.2
Q ss_pred CCCCCcEEEEcCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECC-HHHHHHHHHhC--CCceEcCeEEEE
Q 008081 344 IVAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVF-AETVKQILAKG--NPHFVCGARVLV 419 (578)
Q Consensus 344 ~~~~~rtIyVg~L~~~~-~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~-~e~A~~Al~~m--n~~~I~Gr~V~V 419 (578)
..+...-|||+|| +++ +++++|+++|++||+|..|.+++| +-.|||.|.+ ++.|..|+.++ ++..|+|..+.+
T Consensus 14 ~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 14 EEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp SCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4566789999999 777 999999999999999999999995 4479999999 89999999998 478899988888
Q ss_pred eecc
Q 008081 420 KPYR 423 (578)
Q Consensus 420 k~Ak 423 (578)
....
T Consensus 91 evL~ 94 (121)
T 1owx_A 91 EVLE 94 (121)
T ss_dssp EECC
T ss_pred EECC
Confidence 6543
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.56 E-value=4.9e-08 Score=94.34 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhcCCCeeEEEeecc--------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008081 361 FTEQDVSNYFSKFGPVQDVRIPCQ--------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (578)
Q Consensus 361 ~tEedLr~~FsqfG~V~dVrI~~d--------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak~ 424 (578)
-.+++|++.|++||+|.+|.|+++ +++||+||+|.+.++|++|+..|||.+++||.|.|.++.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 467899999999999999999852 6789999999999999999999999999999999998753
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.001 Score=58.51 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhc-----CCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSK-----FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fsq-----fG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk 420 (578)
...++|.|.+| +..+.++.|+-||+. -|+|++|.... +=|+|+|.+++.|+++|++ ..|.|+|.+|.|.
T Consensus 6 ~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 34679999999 678999999999987 37999987643 6799999999999999998 7899999999999
Q ss_pred ecccCc
Q 008081 421 PYREKS 426 (578)
Q Consensus 421 ~Ak~K~ 426 (578)
++.++.
T Consensus 80 P~~~~~ 85 (104)
T 2dhx_A 80 PAPPRA 85 (104)
T ss_dssp ECCCCC
T ss_pred cCCCCC
Confidence 987764
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00094 Score=59.48 Aligned_cols=75 Identities=8% Similarity=0.014 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcC-----CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKF-----GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~Fsqf-----G~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (578)
..++|-+-+| +.+++...++.+...+ |.|+.|.+.. ..|=|+|.|.+...|-+|.=.++|..|+||+|+|.-
T Consensus 20 ~~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 3678999999 7899999999999999 9999999988 566799999999999999988899999999999986
Q ss_pred ccc
Q 008081 422 YRE 424 (578)
Q Consensus 422 Ak~ 424 (578)
..+
T Consensus 97 v~e 99 (117)
T 2l9w_A 97 IND 99 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 211
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.47 E-value=0.0012 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.906 Sum_probs=22.1
Q ss_pred CCcccccccccccCCCCCCCccCCC
Q 008081 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
..-.+|.||.+|.|++|.+|+|.|.
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred CcceeCHhHccCcCCCCCCCCCccc
Confidence 3457899999999999999999997
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.0053 Score=53.99 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCCCCH----HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 348 SRQIYLTFPAESTFTE----QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tE----edLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
.++|+|++++..-++. +.++++|.+|+++......+ +-.=..|.|.++++|.+|-..|++..+.|++++|..++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 5689999994322333 56789999999999887766 54457899999999999999999999999999999998
Q ss_pred cC
Q 008081 424 EK 425 (578)
Q Consensus 424 ~K 425 (578)
+-
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.013 Score=52.58 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=60.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcC-eEEEEeecccCc
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-ARVLVKPYREKS 426 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~G-r~V~Vk~Ak~K~ 426 (578)
.+-|.|-+. +.. ....|-.+|++||+|.+...+. ...+-.|+|.+..+|++||.+ |+..|+| -.|-|+++..+.
T Consensus 24 ~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 24 DTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCHH
T ss_pred CCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHH
Confidence 456777676 232 5688999999999999998754 678999999999999999999 9999985 788888876443
No 214
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.30 E-value=0.00078 Score=55.29 Aligned_cols=24 Identities=33% Similarity=0.998 Sum_probs=22.3
Q ss_pred CcccccccccccCCCCCCCccCCC
Q 008081 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
...+|.||.+|.|++|.+|+|.|.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred cCeeCHHHhcCCCCCCCCCCCccc
Confidence 467899999999999999999997
No 215
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.82 E-value=0.0023 Score=52.03 Aligned_cols=23 Identities=39% Similarity=1.092 Sum_probs=20.8
Q ss_pred cccccccccccCCCCCC-CccCCC
Q 008081 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~s-CrF~Hg 214 (578)
..+|.+|.+|.|++|.+ |+|.|.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccC
Confidence 35899999999999995 999997
No 216
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.78 E-value=0.0064 Score=48.62 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=39.3
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008081 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (578)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (578)
.-+|.+|++++|++|.||.|+||= .+..|++.|=-.| .+|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLLE--~d~~ell~ll~~~-e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLLE--LSPAQLLLLLASE-DSLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHTT--SCHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhcc--CCHHHHHHHHcCH-HHHHHHHHHHHHHH
Confidence 468999999999999999999984 5666788775544 45677777775543
No 217
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.0023 Score=52.30 Aligned_cols=23 Identities=35% Similarity=1.067 Sum_probs=21.9
Q ss_pred cccccccccccCCCCCCCccCCC
Q 008081 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
.+.|.+|.+|.|+.|+.|.|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 39999999999999999999999
No 218
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.74 E-value=0.0034 Score=54.41 Aligned_cols=23 Identities=39% Similarity=1.211 Sum_probs=14.6
Q ss_pred cccccccccccCCCCCCCccCCC
Q 008081 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
-.+|.||.+|.|++|.+|+|.|.
T Consensus 13 ~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 13 RELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccCcccccCcCCCCCCCCCCCC
Confidence 34566666666666666666665
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.46 E-value=0.015 Score=53.19 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=50.7
Q ss_pred CCHHHHHHHhhcCCCeeE-EEeecc-----------------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008081 361 FTEQDVSNYFSKFGPVQD-VRIPCQ-----------------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (578)
Q Consensus 361 ~tEedLr~~FsqfG~V~d-VrI~~d-----------------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (578)
-....+-++|++||.|.+ +.+..+ ....+-.|+|++..+|.+||.+ ||..|+|..|-|+++
T Consensus 18 ~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 18 TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPY 96 (132)
T ss_dssp GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEEC
T ss_pred HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEEC
Confidence 357888999999999987 322210 1356779999999999999999 999999999999999
Q ss_pred c
Q 008081 423 R 423 (578)
Q Consensus 423 k 423 (578)
.
T Consensus 97 ~ 97 (132)
T 3p3d_A 97 T 97 (132)
T ss_dssp C
T ss_pred C
Confidence 5
No 220
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.40 E-value=0.006 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.995 Sum_probs=22.2
Q ss_pred CCcccccccc-cccCCCCCCCccCCC
Q 008081 190 FPVKVCHYFN-KGFCKHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFa-rG~Ck~G~sCrF~Hg 214 (578)
..-++|.||. .|.|+.|.+|+|.|+
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCC
Confidence 4568999995 899999999999998
No 221
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.23 E-value=0.0053 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.769 Sum_probs=21.4
Q ss_pred ccccccc-ccccCCCCCCCccCCC
Q 008081 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrF~Hg 214 (578)
..+|.|| .+|+|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 6789999 5999999999999997
No 222
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.20 E-value=0.0053 Score=49.89 Aligned_cols=23 Identities=43% Similarity=0.997 Sum_probs=21.3
Q ss_pred CcccccccccccCCCCCCCccCCC
Q 008081 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
....|.+|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4678999999999999 9999997
No 223
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.10 E-value=0.0073 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.951 Sum_probs=20.9
Q ss_pred cccccccccccCCCCC-CCccCCC
Q 008081 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~-sCrF~Hg 214 (578)
.-+|.+|.+|.|++|. .|+|.|-
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999995 9999997
No 224
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.81 E-value=0.005 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.946 Sum_probs=0.0
Q ss_pred ccccc-ccccccCCCCCCCccCCC
Q 008081 192 VKVCH-YFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~-YFarG~Ck~G~sCrF~Hg 214 (578)
.++|. |+..|+|++|..|+|.|+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp ------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCC
Confidence 47897 556899999999999998
No 225
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.77 E-value=0.013 Score=49.77 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=40.9
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 008081 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (578)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~ 62 (578)
.-+|.+|++++|+.|.||.|+||= .+..|++-|=- .+.+|++-|..|-.-|.
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Lle-~~e~L~~kV~EA~~vL~ 80 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLLD-TPGLLDAKVQEALEVLN 80 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTCC-THHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 458999999999999999999985 55567777744 55667888888876654
No 226
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.72 E-value=0.019 Score=49.34 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=40.9
Q ss_pred HHHHHhhhh--cCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 008081 8 KAVYNRIQK--LEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (578)
Q Consensus 8 ~~v~~riq~--~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~ 62 (578)
.-+|.+|++ ++||.|.||.|+|| +.+..|++-|=- .+.+|++-|..|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLL--Emd~~ElL~LLe-s~e~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMIL--DLPPQEVFPLLE-SDELFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHT--TSCHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHh--cCCHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 458999999 99999999999998 467777888754 45567777777766553
No 227
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=94.46 E-value=0.03 Score=47.81 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=39.6
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008081 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (578)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (578)
.-+|.+|++++|+.|.||.|+||= .+..|++.|==. +..|++-|..|-.-|
T Consensus 26 E~Lyp~V~~~~p~~A~KITGMLLE--md~~Ell~lle~-~e~L~~kV~EA~~vL 76 (88)
T 3kuj_A 26 ERLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLES-PESLRSKVDEAVAVL 76 (88)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHTT--SCHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhhCCCccchhhhHhhc--CCHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 358999999999999999999995 456667777433 566787777776555
No 228
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.44 E-value=0.0093 Score=51.77 Aligned_cols=24 Identities=42% Similarity=0.892 Sum_probs=21.9
Q ss_pred CCcccccccccccCCCCCCCccCCC
Q 008081 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
.....|.||.+|.|.+| +|+|.|.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CccccchhhccCCCCCC-CcCccCC
Confidence 45778999999999999 9999997
No 229
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.23 E-value=0.016 Score=62.91 Aligned_cols=56 Identities=20% Similarity=0.435 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 406 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~ 406 (578)
.|.|||... ..+++.+|.+||++||+|.++.+-. .+.-|+.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~~~--~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHCP--EKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEEC--CC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEcC--CCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 468999854 6799999999999999999996654 3446999999999999988766
No 230
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.23 E-value=0.011 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.995 Sum_probs=21.3
Q ss_pred cccccccccccCCCCC-CCccCCC
Q 008081 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~-sCrF~Hg 214 (578)
.-+|.+|.||.|++|. .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 5589999999999997 9999997
No 231
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.09 E-value=0.0056 Score=53.14 Aligned_cols=23 Identities=39% Similarity=1.079 Sum_probs=21.4
Q ss_pred cccccccccccCCCCC-CCccCCC
Q 008081 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~-sCrF~Hg 214 (578)
..+|.||.||.|++|. .|+|.|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 5689999999999998 7999997
No 232
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.59 E-value=0.019 Score=48.36 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=21.8
Q ss_pred CCcccccccccccCCCCCCCccCCC
Q 008081 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
.....|.+|.||.|.+| +|+|+|.
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCC
T ss_pred CceeehhHhhhccccCC-CcceeCC
Confidence 34788999999999998 9999998
No 233
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=93.47 E-value=0.035 Score=51.42 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=41.8
Q ss_pred HHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhcC
Q 008081 9 AVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLGL 63 (578)
Q Consensus 9 ~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~~ 63 (578)
.+|-+|++++||+|.||.|+||= .+..|++.|=-.| .+|++-|.+|-.-|--
T Consensus 73 ~LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~-e~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 73 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQA 124 (144)
T ss_dssp SSHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCT-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 36899999999999999999995 5566788885554 5678888888877755
No 234
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=93.04 E-value=0.029 Score=47.61 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=40.8
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHhc
Q 008081 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (578)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l~ 62 (578)
.-+|.+|++++||+|.||.|+||=- +..|++-|=-.|| .|++-|..|-.-|.
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLEm--d~~Ell~Lles~e-~L~~kv~EA~~vL~ 79 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLEM--DQTEVLHLLESPD-ALKAKVAEAMEVLR 79 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHH--CHHHHHHHTTCSH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhhhhhcC--CHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 4689999999999999999999954 5667888855555 56777777766554
No 235
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.80 E-value=0.045 Score=49.34 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=27.3
Q ss_pred EEEeecc--CCCceEEEEECCHHHHHHHHHhCCCc
Q 008081 378 DVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPH 410 (578)
Q Consensus 378 dVrI~~d--ksRGfgFVtF~~~e~A~~Al~~mn~~ 410 (578)
.++|+.+ +++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4566664 68999999999999999999887653
No 236
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.50 E-value=0.03 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.883 Sum_probs=20.2
Q ss_pred ccccccccc-ccCCCCCCCccCCC
Q 008081 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrF~Hg 214 (578)
..+|.||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 457999999 9999 899999998
No 237
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.10 E-value=0.44 Score=40.72 Aligned_cols=65 Identities=6% Similarity=0.048 Sum_probs=54.2
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
.||.|.+| +..+||+++.+..+.+..+...+.+.+ ..-.-|+|.|.+.+++..-.+..+|+.+.+
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999 789999999999999998877766554 123459999999999999999999887744
No 238
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.03 E-value=0.034 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.857 Sum_probs=20.9
Q ss_pred Cccccccccc-ccCCCCCCCccCCC
Q 008081 191 PVKVCHYFNK-GFCKHGNNCRYFHG 214 (578)
Q Consensus 191 ~~kpC~YFar-G~Ck~G~sCrF~Hg 214 (578)
...+|.||.+ |.|.+ ..|+|.|.
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCC
Confidence 3568999999 99999 99999997
No 239
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=90.62 E-value=0.065 Score=45.77 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=21.2
Q ss_pred CcccccccccccCCCCCCCccCCC
Q 008081 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
..-.|.+|.||.|.|+ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4788999999999997 9999997
No 240
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.78 E-value=1.3 Score=38.50 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=43.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 008081 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (578)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~m 407 (578)
...+-++|+++ .++...||.+.|+.||- ..|+.+- ---|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l~FP--~ewKt~DI~~lFs~fgg-v~I~Wid---DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHVTFP--KEWKTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEEECC--TTCCHHHHHHHHTTTCS-CCCEEEE---TTEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEeCC--hhhhhHHHHHHhhccCC-EEEEEEc---CCeEEEEecCHHHHHHHHHhc
Confidence 34567778665 67789999999999994 3455554 456999999999999999875
No 241
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.38 E-value=0.16 Score=45.47 Aligned_cols=41 Identities=15% Similarity=-0.050 Sum_probs=37.4
Q ss_pred CCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEeecccCc
Q 008081 385 QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYREKS 426 (578)
Q Consensus 385 ksRGfgFVtF~~~e~A~~Al~~m-n~~~I~Gr~V~Vk~Ak~K~ 426 (578)
+-+|+++|+|.+.+.|++|++.+ |+..++| .+.|.++..+.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~ 52 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTF 52 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcc
Confidence 57899999999999999999999 9999999 99999887654
No 242
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=86.95 E-value=0.73 Score=40.21 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 008081 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (578)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn 408 (578)
+-++|+++ .++...||.+.|+.|| -..|+.+- -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP--~ewKt~Di~~lFs~fg-gv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFP--KEWKTSDLYQLFSAFG-NIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECC--TTCCHHHHHHHTTTSE-EEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCC--hhhhhHHHHHHHhccC-CEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45777665 5678999999999999 45566664 4569999999999999999753
No 243
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.87 E-value=0.083 Score=45.57 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCCCCCCCHHH
Q 008081 345 VAGSRQIYLTFPAESTFTEQD 365 (578)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEed 365 (578)
.....+|||+|| +.++|++.
T Consensus 94 ~~~~~~lyv~Nl-~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNF-GPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred cCCCCceEeCCC-CCCccccc
Confidence 344568999999 67777764
No 244
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=78.05 E-value=3.2 Score=35.90 Aligned_cols=66 Identities=5% Similarity=0.030 Sum_probs=48.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008081 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (578)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~d------ksRGfgFVtF~~~e~A~~Al~~mn~~~I~G 414 (578)
+-||.|.+| +..+||+++.+.++.+=++...+.+.+ ..-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 458999999 789999998887776544433222222 112348999999999999999999887744
No 245
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=75.27 E-value=0.63 Score=45.94 Aligned_cols=25 Identities=40% Similarity=0.820 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCCCCCCCccCCC
Q 008081 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
++..+.||-|-.| |.-|+.|+|+|-
T Consensus 188 ~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 188 LEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp ---------------------------
T ss_pred cccCCCCCCCCcc--cccCCcceecCC
Confidence 4667999999877 999999999995
No 246
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=74.26 E-value=0.63 Score=35.61 Aligned_cols=25 Identities=32% Similarity=0.863 Sum_probs=20.9
Q ss_pred CCcccccccc-cccCCCCCCCccCCC
Q 008081 190 FPVKVCHYFN-KGFCKHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFa-rG~Ck~G~sCrF~Hg 214 (578)
....+|.=|+ -|+|.+|-.|.+.|-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 4567887774 599999999999996
No 247
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=56.65 E-value=26 Score=38.16 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC
Q 008081 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP 409 (578)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqfG~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~ 409 (578)
..+.++|++. ..+...+|.+.|+.||.| +|+.+ ....|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~f~--~~~~~~~i~~~fs~fg~v-~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVTFP--KEWKTSDLYQLFSAFGNI-QISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEECC--TTCCHHHHHHHGGGGCCC-EEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEeCC--CCCCHHHHHHHHHhcCCE-EEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3568888855 456789999999999954 55554 456799999999999999998743
No 248
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=43.55 E-value=9.5 Score=37.68 Aligned_cols=23 Identities=30% Similarity=0.714 Sum_probs=21.4
Q ss_pred CcccccccccccCCCCCCCccCCC
Q 008081 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 191 ~~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
-+++|.||-+|-|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 489999999999999 89999886
No 249
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=41.75 E-value=8.4 Score=38.07 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=22.1
Q ss_pred CCcccccccccccC----CCCCCCccCCC
Q 008081 190 FPVKVCHYFNKGFC----KHGNNCRYFHG 214 (578)
Q Consensus 190 ~~~kpC~YFarG~C----k~G~sCrF~Hg 214 (578)
-.++.|+||--|.| ..|+.|+|.|-
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 56899999999999 46799999997
No 250
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=32.82 E-value=50 Score=25.94 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCC-----CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008081 350 QIYLTFPAESTFTEQDVSNYFSKFG-----PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (578)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqfG-----~V~dVrI~~dksRGfgFVtF~~~e~A~~Al~~mn~~~I~Gr~V~Vk~Ak 423 (578)
++||..=....++..+|-.++..-| .|=.|+| .-.|.||.-.. +.++.+++.+++..++|+++.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4566443345566677777776544 3555666 45699998654 56788899999999999999998764
No 251
>1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2
Probab=23.22 E-value=30 Score=24.49 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=16.8
Q ss_pred CCCcccccccccccCCCCCCCcc
Q 008081 189 EFPVKVCHYFNKGFCKHGNNCRY 211 (578)
Q Consensus 189 ~~~~kpC~YFarG~Ck~G~sCrF 211 (578)
-.|-|||. +--|+-|..|+|
T Consensus 12 KeG~kpCK---~KKC~GGWkCK~ 31 (37)
T 1i25_A 12 KEGDKPCK---KKKCKGGWKCKF 31 (37)
T ss_dssp BCSSSBCB---CCCCCTTEEECS
T ss_pred ccCCCccc---cccCCCCceEEE
Confidence 45679997 678999999998
No 252
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.56 E-value=17 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCeeEEEeeccCCCceEEEEEC
Q 008081 364 QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFV 395 (578)
Q Consensus 364 edLr~~FsqfG~V~dVrI~~dksRGfgFVtF~ 395 (578)
+|+.+.|...|.|.-.. ..||||||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 45566677777776554 37999999975
No 253
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=21.40 E-value=23 Score=26.85 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=16.9
Q ss_pred cccccccccccCCCCCCCccCCC
Q 008081 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
..||.=-.++||-|| .|.|.+.
T Consensus 5 ~~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 5 FNDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred ccccChhhcCcccCC-EEeeccC
Confidence 346665668999999 9999664
No 254
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=20.73 E-value=22 Score=26.82 Aligned_cols=21 Identities=33% Similarity=0.893 Sum_probs=17.0
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008081 193 KVCHYFNKGFCKHGNNCRYFHG 214 (578)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (578)
.||.=-.++||.|| .|+|.++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 47776667999999 9999775
No 255
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=20.16 E-value=17 Score=23.61 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.6
Q ss_pred chhhhhhhhhcccC
Q 008081 21 NVSKIIGYLLLQDH 34 (578)
Q Consensus 21 ~a~ki~g~ll~qd~ 34 (578)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 46799999999875
Done!