Query 008082
Match_columns 578
No_of_seqs 229 out of 426
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 2.4E-25 5.3E-30 267.5 63.3 474 27-518 1096-1661(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 1.4E-30 3.1E-35 302.2 0.0 472 27-516 38-601 (859)
3 PF05701 WEMBL: Weak chloropla 99.9 6.3E-17 1.4E-21 179.6 60.5 223 27-253 26-263 (522)
4 KOG0161 Myosin class II heavy 99.9 7E-16 1.5E-20 186.7 59.9 437 31-503 1241-1730(1930)
5 PF01576 Myosin_tail_1: Myosin 99.7 9.9E-19 2.1E-23 203.7 0.0 314 173-503 332-672 (859)
6 PRK02224 chromosome segregatio 99.4 4.6E-06 1E-10 99.1 66.8 30 390-420 582-611 (880)
7 PRK02224 chromosome segregatio 99.4 5.9E-06 1.3E-10 98.2 66.9 67 365-434 573-639 (880)
8 PF10174 Cast: RIM-binding pro 99.2 3.8E-05 8.2E-10 88.6 60.2 68 16-86 35-103 (775)
9 TIGR00606 rad50 rad50. This fa 99.1 8.4E-05 1.8E-09 92.0 62.1 26 281-306 883-908 (1311)
10 TIGR02169 SMC_prok_A chromosom 99.1 1.3E-05 2.9E-10 97.6 53.5 35 468-502 979-1013(1164)
11 PF10174 Cast: RIM-binding pro 99.1 0.00011 2.4E-09 84.7 58.2 235 134-380 252-509 (775)
12 TIGR02168 SMC_prok_B chromosom 99.0 0.00021 4.5E-09 87.1 70.7 25 281-305 672-696 (1179)
13 KOG4674 Uncharacterized conser 99.0 0.00025 5.3E-09 86.9 61.2 61 198-258 831-891 (1822)
14 TIGR00606 rad50 rad50. This fa 99.0 0.00048 1E-08 85.3 61.8 22 451-472 1072-1093(1311)
15 TIGR02168 SMC_prok_B chromosom 98.9 0.00063 1.4E-08 83.0 70.8 17 343-359 677-693 (1179)
16 COG1196 Smc Chromosome segrega 98.9 0.00068 1.5E-08 83.1 66.2 35 468-502 970-1004(1163)
17 PRK03918 chromosome segregatio 98.9 0.00079 1.7E-08 80.2 69.2 28 282-309 455-482 (880)
18 TIGR02169 SMC_prok_A chromosom 98.8 0.0011 2.4E-08 80.9 71.4 26 281-306 676-701 (1164)
19 PF07888 CALCOCO1: Calcium bin 98.8 0.00079 1.7E-08 74.3 48.3 35 469-503 411-445 (546)
20 COG1196 Smc Chromosome segrega 98.7 0.0023 5E-08 78.5 69.8 45 336-380 737-781 (1163)
21 PF07888 CALCOCO1: Calcium bin 98.7 0.0014 2.9E-08 72.5 45.5 101 152-252 217-317 (546)
22 PF05701 WEMBL: Weak chloropla 98.7 0.0017 3.6E-08 72.9 63.2 169 343-515 316-521 (522)
23 PRK03918 chromosome segregatio 98.7 0.003 6.6E-08 75.2 68.2 28 278-305 458-485 (880)
24 KOG4674 Uncharacterized conser 98.6 0.0043 9.3E-08 76.5 59.7 298 129-449 663-960 (1822)
25 PF00038 Filament: Intermediat 98.6 0.00098 2.1E-08 69.7 39.9 89 401-503 216-304 (312)
26 PF00038 Filament: Intermediat 98.6 0.00066 1.4E-08 71.0 36.3 223 175-410 53-278 (312)
27 KOG0977 Nuclear envelope prote 98.5 0.00068 1.5E-08 74.8 36.2 278 111-432 79-366 (546)
28 KOG0971 Microtubule-associated 98.5 0.0065 1.4E-07 69.4 49.2 322 31-381 227-556 (1243)
29 KOG0971 Microtubule-associated 98.3 0.016 3.4E-07 66.4 45.4 38 479-518 567-604 (1243)
30 PF00261 Tropomyosin: Tropomyo 98.2 0.0051 1.1E-07 62.1 30.7 217 28-262 1-220 (237)
31 KOG0977 Nuclear envelope prote 98.1 0.024 5.1E-07 63.0 35.8 92 391-503 293-384 (546)
32 PF00261 Tropomyosin: Tropomyo 98.0 0.012 2.6E-07 59.4 29.8 39 175-213 35-73 (237)
33 PF12128 DUF3584: Protein of u 98.0 0.1 2.2E-06 64.5 68.0 18 504-521 914-931 (1201)
34 KOG4673 Transcription factor T 97.9 0.083 1.8E-06 59.1 55.8 72 444-518 715-786 (961)
35 KOG0994 Extracellular matrix g 97.8 0.13 2.8E-06 60.6 52.0 70 152-221 1412-1481(1758)
36 PF12128 DUF3584: Protein of u 97.8 0.18 4E-06 62.3 66.6 57 199-255 478-534 (1201)
37 PF05483 SCP-1: Synaptonemal c 97.8 0.099 2.1E-06 58.7 61.6 105 34-138 253-363 (786)
38 KOG0963 Transcription factor/C 97.8 0.095 2.1E-06 58.4 40.9 39 224-262 188-226 (629)
39 KOG4643 Uncharacterized coiled 97.7 0.18 4E-06 58.8 51.2 83 390-472 512-596 (1195)
40 PF05557 MAD: Mitotic checkpoi 97.7 0.00015 3.2E-09 84.5 10.3 30 279-308 399-428 (722)
41 KOG4643 Uncharacterized coiled 97.7 0.2 4.4E-06 58.5 47.4 84 177-260 258-343 (1195)
42 KOG0933 Structural maintenance 97.7 0.23 5.1E-06 58.0 53.7 106 181-302 397-502 (1174)
43 KOG0976 Rho/Rac1-interacting s 97.6 0.23 5E-06 56.6 53.4 72 349-420 364-443 (1265)
44 PHA02562 46 endonuclease subun 97.6 0.097 2.1E-06 59.1 30.8 25 280-304 300-324 (562)
45 PRK04863 mukB cell division pr 97.6 0.45 9.8E-06 59.6 49.0 17 399-415 511-527 (1486)
46 KOG0996 Structural maintenance 97.6 0.33 7.2E-06 57.7 61.3 53 114-166 480-532 (1293)
47 PF15070 GOLGA2L5: Putative go 97.6 0.27 5.9E-06 56.2 39.8 66 191-259 5-70 (617)
48 PRK01156 chromosome segregatio 97.5 0.41 8.9E-06 57.4 65.8 37 40-76 195-231 (895)
49 PF05667 DUF812: Protein of un 97.5 0.3 6.4E-06 55.6 35.3 135 281-433 396-530 (594)
50 PRK04863 mukB cell division pr 97.5 0.57 1.2E-05 58.7 49.7 79 30-108 232-331 (1486)
51 PRK01156 chromosome segregatio 97.5 0.44 9.5E-06 57.2 67.0 30 229-258 413-442 (895)
52 PF05557 MAD: Mitotic checkpoi 97.4 8.5E-05 1.8E-09 86.5 3.9 28 473-500 508-535 (722)
53 KOG0250 DNA repair protein RAD 97.4 0.46 1E-05 56.3 60.5 213 35-258 207-420 (1074)
54 PF05483 SCP-1: Synaptonemal c 97.4 0.34 7.3E-06 54.6 61.1 131 390-543 583-718 (786)
55 KOG0996 Structural maintenance 97.4 0.53 1.2E-05 56.1 62.1 135 126-260 404-556 (1293)
56 KOG1029 Endocytic adaptor prot 97.4 0.42 9.1E-06 54.4 39.4 35 23-57 315-353 (1118)
57 PF09726 Macoilin: Transmembra 97.4 0.32 6.9E-06 56.4 31.4 26 284-309 543-568 (697)
58 PRK11637 AmiB activator; Provi 97.4 0.33 7.2E-06 53.2 30.4 33 162-194 47-79 (428)
59 COG1579 Zn-ribbon protein, pos 97.3 0.16 3.4E-06 51.1 24.7 85 169-258 38-122 (239)
60 PHA02562 46 endonuclease subun 97.2 0.59 1.3E-05 52.8 31.8 40 341-380 356-395 (562)
61 PF04849 HAP1_N: HAP1 N-termin 97.2 0.36 7.8E-06 50.1 27.0 218 199-429 71-304 (306)
62 PF05622 HOOK: HOOK protein; 97.2 8E-05 1.7E-09 86.6 0.0 30 473-502 620-649 (713)
63 COG1579 Zn-ribbon protein, pos 97.1 0.24 5.2E-06 49.8 22.9 100 159-258 35-136 (239)
64 PF06160 EzrA: Septation ring 97.1 0.88 1.9E-05 51.7 47.0 136 364-503 313-465 (560)
65 COG4942 Membrane-bound metallo 97.0 0.68 1.5E-05 50.1 34.0 6 564-569 306-311 (420)
66 PF05010 TACC: Transforming ac 97.0 0.43 9.3E-06 47.1 29.6 123 224-365 68-190 (207)
67 PF09726 Macoilin: Transmembra 96.9 1.2 2.5E-05 51.9 30.2 23 480-502 627-649 (697)
68 KOG0933 Structural maintenance 96.9 1.4 3.1E-05 51.8 57.0 101 341-441 739-841 (1174)
69 KOG0995 Centromere-associated 96.9 1.1 2.3E-05 49.9 43.2 56 201-256 270-325 (581)
70 PRK04778 septation ring format 96.9 1.3 2.8E-05 50.5 49.7 38 486-523 473-510 (569)
71 TIGR02680 conserved hypothetic 96.8 1.5 3.2E-05 55.1 31.9 44 25-68 739-782 (1353)
72 PF12718 Tropomyosin_1: Tropom 96.8 0.44 9.6E-06 44.3 20.8 57 156-212 15-71 (143)
73 KOG0612 Rho-associated, coiled 96.7 2.2 4.7E-05 51.4 45.0 23 388-410 743-765 (1317)
74 PF14915 CCDC144C: CCDC144C pr 96.7 0.87 1.9E-05 46.8 30.2 176 330-515 57-247 (305)
75 PF12718 Tropomyosin_1: Tropom 96.7 0.35 7.6E-06 45.0 19.7 58 458-515 77-134 (143)
76 PF13514 AAA_27: AAA domain 96.7 2.6 5.7E-05 51.9 58.4 57 467-523 939-996 (1111)
77 COG1340 Uncharacterized archae 96.7 0.97 2.1E-05 46.6 33.4 38 343-380 158-195 (294)
78 PF15619 Lebercilin: Ciliary p 96.7 0.75 1.6E-05 45.0 27.2 178 159-365 16-193 (194)
79 PRK04778 septation ring format 96.6 1.9 4.2E-05 49.1 53.1 134 29-172 80-215 (569)
80 KOG0946 ER-Golgi vesicle-tethe 96.6 1.4 3.1E-05 50.7 26.4 89 166-254 796-884 (970)
81 KOG0994 Extracellular matrix g 96.5 2.9 6.4E-05 49.9 41.5 43 155-197 1542-1584(1758)
82 KOG1029 Endocytic adaptor prot 96.5 2.4 5.1E-05 48.7 32.9 6 22-27 304-309 (1118)
83 PRK09039 hypothetical protein; 96.5 0.62 1.3E-05 49.6 22.1 28 281-308 139-166 (343)
84 PF05622 HOOK: HOOK protein; 96.3 0.001 2.2E-08 77.5 0.0 12 509-520 672-683 (713)
85 KOG0250 DNA repair protein RAD 96.1 4.6 9.9E-05 48.3 59.2 130 129-258 332-462 (1074)
86 PRK09039 hypothetical protein; 95.9 2.6 5.5E-05 45.0 23.6 40 219-258 124-163 (343)
87 KOG0995 Centromere-associated 95.9 4 8.7E-05 45.6 47.4 46 387-432 489-534 (581)
88 PF15619 Lebercilin: Ciliary p 95.9 2 4.4E-05 42.0 24.9 31 387-417 164-194 (194)
89 KOG0980 Actin-binding protein 95.8 5.3 0.00012 46.6 33.3 120 129-255 391-517 (980)
90 KOG0999 Microtubule-associated 95.5 5.1 0.00011 44.5 41.5 51 390-440 321-371 (772)
91 KOG0964 Structural maintenance 95.5 7.2 0.00016 46.1 58.1 51 29-81 188-241 (1200)
92 PF05667 DUF812: Protein of un 95.4 6.6 0.00014 45.0 33.5 138 28-168 328-481 (594)
93 PF14662 CCDC155: Coiled-coil 95.3 2.9 6.4E-05 40.5 25.9 40 327-366 149-188 (193)
94 PF09728 Taxilin: Myosin-like 95.2 4.8 0.0001 42.3 37.5 82 212-305 217-298 (309)
95 PF09755 DUF2046: Uncharacteri 95.2 4.7 0.0001 42.0 34.3 77 215-304 24-102 (310)
96 KOG0612 Rho-associated, coiled 95.0 12 0.00025 45.5 49.8 59 181-239 586-644 (1317)
97 PF15070 GOLGA2L5: Putative go 94.9 9.6 0.00021 43.8 42.1 46 390-435 198-243 (617)
98 KOG1003 Actin filament-coating 94.7 4.4 9.5E-05 39.3 22.5 113 175-313 3-115 (205)
99 PF08317 Spc7: Spc7 kinetochor 94.7 5.6 0.00012 42.0 21.1 52 177-228 210-261 (325)
100 COG4942 Membrane-bound metallo 94.7 8.1 0.00018 42.0 32.2 17 524-540 304-320 (420)
101 PF05911 DUF869: Plant protein 94.6 12 0.00026 44.0 28.0 145 325-503 59-204 (769)
102 KOG0964 Structural maintenance 94.6 13 0.00028 44.2 58.0 29 282-310 667-695 (1200)
103 PF10473 CENP-F_leu_zip: Leuci 94.5 4 8.7E-05 37.8 19.7 56 200-255 41-96 (140)
104 PF10498 IFT57: Intra-flagella 94.5 2.9 6.2E-05 44.9 18.4 108 109-219 216-323 (359)
105 COG3883 Uncharacterized protei 94.4 6.9 0.00015 40.0 27.4 23 288-310 75-97 (265)
106 PF14662 CCDC155: Coiled-coil 94.2 5.9 0.00013 38.5 25.6 74 133-206 66-139 (193)
107 TIGR01843 type_I_hlyD type I s 93.9 11 0.00024 40.6 23.5 39 175-213 143-181 (423)
108 COG5185 HEC1 Protein involved 93.9 12 0.00026 40.9 36.2 97 205-310 310-406 (622)
109 PF09728 Taxilin: Myosin-like 93.9 9.9 0.00021 40.0 40.6 82 335-432 208-289 (309)
110 PF09730 BicD: Microtubule-ass 93.9 16 0.00036 42.5 48.7 45 458-502 416-460 (717)
111 KOG4809 Rab6 GTPase-interactin 93.8 13 0.00029 41.3 39.6 142 173-342 328-469 (654)
112 smart00787 Spc7 Spc7 kinetocho 93.7 9.2 0.0002 40.2 20.0 52 205-256 205-256 (312)
113 COG4372 Uncharacterized protei 93.7 11 0.00025 40.1 31.6 85 111-202 121-205 (499)
114 PF06160 EzrA: Septation ring 93.3 18 0.00039 41.2 51.2 100 72-172 110-211 (560)
115 KOG0018 Structural maintenance 93.1 25 0.00054 42.3 40.4 128 111-241 158-285 (1141)
116 PF08317 Spc7: Spc7 kinetochor 93.0 14 0.0003 39.1 27.4 49 172-220 152-200 (325)
117 TIGR03185 DNA_S_dndD DNA sulfu 93.0 22 0.00047 41.3 37.4 52 33-84 207-258 (650)
118 KOG4673 Transcription factor T 92.6 23 0.0005 40.6 53.7 38 177-214 475-512 (961)
119 PF11559 ADIP: Afadin- and alp 92.4 9.2 0.0002 35.6 16.6 38 225-262 94-131 (151)
120 PF09787 Golgin_A5: Golgin sub 92.4 23 0.00049 40.0 34.1 34 401-434 392-425 (511)
121 PF09730 BicD: Microtubule-ass 92.3 27 0.00059 40.8 45.3 56 205-260 266-321 (717)
122 PF07111 HCR: Alpha helical co 92.1 27 0.00058 40.2 57.6 53 450-502 510-562 (739)
123 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.6 10 0.00023 34.5 19.3 23 122-144 54-76 (132)
124 PF00769 ERM: Ezrin/radixin/mo 91.5 16 0.00034 37.2 17.7 52 328-379 4-55 (246)
125 PF05010 TACC: Transforming ac 91.3 16 0.00035 36.1 27.2 20 290-309 108-127 (207)
126 PF10498 IFT57: Intra-flagella 91.0 22 0.00047 38.2 19.0 82 205-299 267-348 (359)
127 PF10146 zf-C4H2: Zinc finger- 91.0 8.7 0.00019 38.6 15.0 72 211-301 32-103 (230)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.8 13 0.00027 34.0 18.3 23 233-255 106-128 (132)
129 KOG0976 Rho/Rac1-interacting s 90.8 39 0.00084 39.5 58.7 23 80-102 66-88 (1265)
130 PF10481 CENP-F_N: Cenp-F N-te 90.7 21 0.00047 36.4 18.5 95 159-253 78-190 (307)
131 KOG0978 E3 ubiquitin ligase in 90.7 39 0.00084 39.3 56.9 58 457-514 562-619 (698)
132 PF12325 TMF_TATA_bd: TATA ele 90.3 12 0.00027 33.7 13.9 95 28-148 16-110 (120)
133 PF12325 TMF_TATA_bd: TATA ele 90.0 13 0.00028 33.6 13.7 21 215-235 72-92 (120)
134 KOG1003 Actin filament-coating 90.0 20 0.00043 34.9 25.8 59 114-172 5-63 (205)
135 COG3883 Uncharacterized protei 89.9 25 0.00055 36.0 23.5 20 391-410 201-220 (265)
136 PF04849 HAP1_N: HAP1 N-termin 89.8 28 0.00061 36.4 26.8 28 159-186 94-121 (306)
137 PF11559 ADIP: Afadin- and alp 89.8 17 0.00037 33.8 17.4 105 148-255 45-149 (151)
138 PF10481 CENP-F_N: Cenp-F N-te 89.5 18 0.00038 37.0 15.5 75 176-250 18-92 (307)
139 KOG0963 Transcription factor/C 89.4 44 0.00095 38.0 45.0 207 176-415 189-404 (629)
140 KOG4593 Mitotic checkpoint pro 89.3 47 0.001 38.3 62.2 20 128-147 148-167 (716)
141 PF06008 Laminin_I: Laminin Do 89.1 28 0.00062 35.5 30.9 22 318-339 153-174 (264)
142 KOG0804 Cytoplasmic Zn-finger 89.0 31 0.00067 37.7 17.8 71 186-259 378-448 (493)
143 TIGR03185 DNA_S_dndD DNA sulfu 88.7 53 0.0012 38.1 34.9 50 28-77 209-258 (650)
144 KOG1937 Uncharacterized conser 88.5 42 0.00091 36.7 33.2 39 114-152 245-283 (521)
145 TIGR01005 eps_transp_fam exopo 88.4 60 0.0013 38.3 25.2 114 177-306 289-403 (754)
146 PF09789 DUF2353: Uncharacteri 88.0 39 0.00084 35.7 22.6 178 126-303 15-227 (319)
147 PF08614 ATG16: Autophagy prot 87.9 4.6 0.0001 39.3 10.3 11 288-298 167-177 (194)
148 PF06818 Fez1: Fez1; InterPro 87.9 29 0.00063 34.1 21.0 29 281-309 133-161 (202)
149 KOG0946 ER-Golgi vesicle-tethe 87.7 64 0.0014 37.9 31.1 34 344-377 905-938 (970)
150 PF10146 zf-C4H2: Zinc finger- 87.2 35 0.00076 34.3 16.3 63 128-190 5-67 (230)
151 COG0419 SbcC ATPase involved i 87.2 78 0.0017 38.3 66.7 56 200-255 385-440 (908)
152 PF08614 ATG16: Autophagy prot 87.1 12 0.00026 36.4 12.7 19 197-215 130-148 (194)
153 PF05276 SH3BP5: SH3 domain-bi 87.1 37 0.0008 34.4 26.5 129 130-258 73-210 (239)
154 COG4372 Uncharacterized protei 86.7 49 0.0011 35.5 31.2 117 128-258 75-191 (499)
155 PF09755 DUF2046: Uncharacteri 85.9 49 0.0011 34.7 35.4 133 125-259 107-249 (310)
156 COG2433 Uncharacterized conser 85.9 22 0.00048 40.2 15.1 8 245-252 480-487 (652)
157 TIGR03007 pepcterm_ChnLen poly 85.5 66 0.0014 35.8 23.3 24 281-304 357-380 (498)
158 PF04012 PspA_IM30: PspA/IM30 85.0 42 0.00091 33.1 18.5 45 458-502 95-139 (221)
159 TIGR00634 recN DNA repair prot 84.7 79 0.0017 36.1 25.8 12 287-298 361-372 (563)
160 PF08826 DMPK_coil: DMPK coile 84.3 19 0.00041 28.6 10.0 45 465-509 15-59 (61)
161 PRK10884 SH3 domain-containing 84.2 19 0.00041 35.6 12.5 26 227-252 141-166 (206)
162 KOG0018 Structural maintenance 83.6 1.1E+02 0.0025 37.0 53.8 43 460-502 848-890 (1141)
163 PF14915 CCDC144C: CCDC144C pr 83.4 61 0.0013 33.7 40.2 57 200-256 147-203 (305)
164 PF04111 APG6: Autophagy prote 83.1 30 0.00064 36.5 14.2 38 222-259 96-133 (314)
165 PF04156 IncA: IncA protein; 82.9 46 0.00099 32.0 16.6 11 204-214 130-140 (191)
166 PRK15422 septal ring assembly 82.4 21 0.00047 29.6 9.9 67 167-233 9-75 (79)
167 PF04111 APG6: Autophagy prote 82.4 35 0.00076 36.0 14.4 87 167-253 48-134 (314)
168 PF11932 DUF3450: Protein of u 82.2 60 0.0013 32.8 17.4 78 147-224 34-111 (251)
169 COG3074 Uncharacterized protei 81.8 24 0.00052 28.5 9.6 66 169-234 11-76 (79)
170 PF06008 Laminin_I: Laminin Do 81.7 65 0.0014 32.8 31.2 32 390-421 223-254 (264)
171 TIGR01005 eps_transp_fam exopo 81.3 1.2E+02 0.0026 35.8 24.4 27 158-184 197-223 (754)
172 KOG0980 Actin-binding protein 80.3 1.4E+02 0.0029 35.7 38.1 27 236-262 463-489 (980)
173 PF15066 CAGE1: Cancer-associa 80.2 1E+02 0.0022 34.1 24.6 79 215-298 387-465 (527)
174 COG4026 Uncharacterized protei 80.0 16 0.00035 36.1 9.9 17 231-247 162-178 (290)
175 KOG0962 DNA repair protein RAD 79.5 1.7E+02 0.0038 36.4 55.3 52 30-81 576-628 (1294)
176 COG2433 Uncharacterized conser 79.2 39 0.00083 38.4 13.7 29 224-252 480-508 (652)
177 smart00787 Spc7 Spc7 kinetocho 78.4 95 0.0021 32.7 25.5 47 173-219 148-194 (312)
178 COG4026 Uncharacterized protei 77.9 23 0.00049 35.2 10.2 48 206-253 144-191 (290)
179 COG0419 SbcC ATPase involved i 77.6 1.7E+02 0.0038 35.4 66.5 54 197-250 389-442 (908)
180 PF13870 DUF4201: Domain of un 76.0 74 0.0016 30.3 23.5 89 163-258 50-138 (177)
181 PF05384 DegS: Sensor protein 75.5 75 0.0016 30.1 22.4 116 143-258 8-131 (159)
182 PF09304 Cortex-I_coil: Cortex 75.5 57 0.0012 28.8 15.0 29 160-188 7-35 (107)
183 PF08826 DMPK_coil: DMPK coile 74.8 40 0.00087 26.7 9.3 44 215-258 15-58 (61)
184 PF13514 AAA_27: AAA domain 74.2 2.3E+02 0.005 35.2 62.5 43 477-519 675-717 (1111)
185 KOG4403 Cell surface glycoprot 74.1 1.4E+02 0.003 32.6 18.9 17 402-418 310-326 (575)
186 PF10212 TTKRSYEDQ: Predicted 74.1 85 0.0018 35.2 14.6 81 175-258 419-499 (518)
187 KOG1853 LIS1-interacting prote 73.6 1.1E+02 0.0024 31.1 23.7 44 389-432 72-115 (333)
188 PF14197 Cep57_CLD_2: Centroso 73.3 25 0.00054 28.5 7.8 31 225-255 5-35 (69)
189 PF00769 ERM: Ezrin/radixin/mo 72.4 1.2E+02 0.0025 30.9 17.8 54 466-522 80-133 (246)
190 PF04012 PspA_IM30: PspA/IM30 72.3 1E+02 0.0023 30.3 18.4 12 137-148 40-51 (221)
191 PF13870 DUF4201: Domain of un 72.1 93 0.002 29.7 22.7 94 164-257 8-102 (177)
192 PF05911 DUF869: Plant protein 72.0 2.2E+02 0.0047 33.9 35.3 28 281-308 122-149 (769)
193 KOG4807 F-actin binding protei 71.6 1.5E+02 0.0033 31.9 30.0 17 28-44 298-314 (593)
194 PF05335 DUF745: Protein of un 71.1 1.1E+02 0.0023 29.9 17.8 62 197-258 109-170 (188)
195 PF13851 GAS: Growth-arrest sp 70.6 1.1E+02 0.0024 30.0 26.2 21 291-311 148-168 (201)
196 TIGR00634 recN DNA repair prot 69.9 2E+02 0.0044 32.7 26.5 34 225-258 168-201 (563)
197 TIGR03007 pepcterm_ChnLen poly 69.7 1.9E+02 0.0041 32.2 24.0 26 284-309 322-347 (498)
198 PF03148 Tektin: Tektin family 69.6 1.7E+02 0.0037 31.7 37.1 280 45-380 46-361 (384)
199 PF07106 TBPIP: Tat binding pr 69.2 36 0.00078 32.2 9.4 63 227-306 74-136 (169)
200 KOG4809 Rab6 GTPase-interactin 69.0 2.1E+02 0.0045 32.4 34.4 53 463-518 516-568 (654)
201 PF13851 GAS: Growth-arrest sp 67.9 1.3E+02 0.0028 29.6 25.7 78 111-191 7-84 (201)
202 PF06005 DUF904: Protein of un 67.6 67 0.0015 26.3 10.1 24 204-227 11-34 (72)
203 KOG1853 LIS1-interacting prote 67.0 1.5E+02 0.0033 30.1 22.1 26 409-434 134-159 (333)
204 PF04582 Reo_sigmaC: Reovirus 66.9 11 0.00024 39.7 5.7 17 225-241 119-135 (326)
205 PF09304 Cortex-I_coil: Cortex 66.6 92 0.002 27.5 15.1 58 193-250 12-69 (107)
206 KOG4360 Uncharacterized coiled 66.3 1.1E+02 0.0025 34.0 13.2 71 172-242 229-299 (596)
207 PF09738 DUF2051: Double stran 66.1 1.7E+02 0.0036 30.8 14.1 46 173-218 109-154 (302)
208 PF02183 HALZ: Homeobox associ 65.7 27 0.00059 25.9 6.0 35 219-253 6-40 (45)
209 PF09787 Golgin_A5: Golgin sub 65.4 2.4E+02 0.0052 31.8 36.8 26 327-352 353-378 (511)
210 PRK15422 septal ring assembly 65.1 81 0.0017 26.3 10.5 59 201-259 8-66 (79)
211 KOG1899 LAR transmembrane tyro 64.8 2.6E+02 0.0057 32.1 22.9 37 479-515 278-314 (861)
212 PF07106 TBPIP: Tat binding pr 64.2 95 0.0021 29.4 11.2 63 345-414 74-136 (169)
213 PRK09841 cryptic autophosphory 63.9 2.4E+02 0.0053 33.2 16.8 32 154-185 266-297 (726)
214 PLN03188 kinesin-12 family pro 63.8 3.8E+02 0.0082 33.6 36.6 95 393-519 1154-1248(1320)
215 PRK11519 tyrosine kinase; Prov 63.3 3E+02 0.0066 32.4 17.4 32 154-185 266-297 (719)
216 PF06428 Sec2p: GDP/GTP exchan 63.2 7.7 0.00017 33.8 3.2 70 184-253 9-79 (100)
217 PF15397 DUF4618: Domain of un 61.9 1.9E+02 0.0042 29.6 27.9 15 247-261 64-78 (258)
218 TIGR02894 DNA_bind_RsfA transc 61.9 1.2E+02 0.0025 28.9 10.8 54 186-239 100-153 (161)
219 PF10168 Nup88: Nuclear pore c 61.4 3.3E+02 0.0073 32.2 18.4 16 128-143 580-595 (717)
220 PRK11281 hypothetical protein; 61.4 4.1E+02 0.0089 33.1 34.3 275 125-428 37-333 (1113)
221 TIGR01000 bacteriocin_acc bact 60.6 2.7E+02 0.0058 30.8 22.4 21 238-258 242-262 (457)
222 COG1842 PspA Phage shock prote 60.3 1.9E+02 0.0042 29.0 21.3 44 391-434 89-132 (225)
223 PF10186 Atg14: UV radiation r 59.9 2E+02 0.0044 29.2 19.4 20 167-186 25-44 (302)
224 TIGR02449 conserved hypothetic 59.9 81 0.0017 25.4 8.1 46 418-467 17-62 (65)
225 PRK10246 exonuclease subunit S 59.6 4.2E+02 0.0092 32.8 61.8 25 489-513 860-884 (1047)
226 PF12795 MscS_porin: Mechanose 59.1 2E+02 0.0043 28.8 23.0 10 135-144 53-62 (240)
227 PF12777 MT: Microtubule-bindi 59.0 73 0.0016 33.9 10.4 78 181-258 219-296 (344)
228 PF15290 Syntaphilin: Golgi-lo 58.5 2.3E+02 0.005 29.3 15.2 98 400-501 67-168 (305)
229 PF06818 Fez1: Fez1; InterPro 58.3 2E+02 0.0042 28.5 21.3 14 290-303 135-148 (202)
230 COG1842 PspA Phage shock prote 58.2 2.1E+02 0.0045 28.7 19.3 65 458-523 96-160 (225)
231 PF10212 TTKRSYEDQ: Predicted 57.6 2.9E+02 0.0062 31.2 14.6 33 220-252 482-514 (518)
232 PF10186 Atg14: UV radiation r 55.8 2.4E+02 0.0052 28.7 20.6 16 132-147 32-47 (302)
233 PF02183 HALZ: Homeobox associ 55.6 45 0.00098 24.7 5.6 39 223-261 3-41 (45)
234 PF03915 AIP3: Actin interacti 55.5 3.2E+02 0.007 30.1 18.3 64 188-253 204-267 (424)
235 PF05335 DUF745: Protein of un 55.0 2.1E+02 0.0046 27.9 18.1 54 464-517 126-179 (188)
236 TIGR03017 EpsF chain length de 54.0 3.3E+02 0.007 29.7 24.6 22 281-302 344-365 (444)
237 PF08647 BRE1: BRE1 E3 ubiquit 53.1 1.5E+02 0.0032 25.5 13.0 59 164-222 5-63 (96)
238 KOG1962 B-cell receptor-associ 52.5 2.5E+02 0.0055 28.0 12.2 13 129-141 116-128 (216)
239 PF09738 DUF2051: Double stran 52.3 2.6E+02 0.0057 29.4 12.8 57 164-220 79-135 (302)
240 PF12761 End3: Actin cytoskele 52.3 1.1E+02 0.0023 30.1 9.2 95 162-256 96-191 (195)
241 TIGR02231 conserved hypothetic 52.1 1.7E+02 0.0036 33.0 12.4 7 247-253 160-166 (525)
242 PF02403 Seryl_tRNA_N: Seryl-t 51.8 1.6E+02 0.0034 25.5 10.8 13 241-253 83-95 (108)
243 KOG4074 Leucine zipper nuclear 51.7 1.9E+02 0.0042 30.1 11.2 22 491-512 200-221 (383)
244 COG5185 HEC1 Protein involved 51.2 3.9E+02 0.0084 29.8 38.3 21 283-303 334-354 (622)
245 COG3074 Uncharacterized protei 51.2 1.3E+02 0.0029 24.4 10.3 48 191-238 12-59 (79)
246 PLN03188 kinesin-12 family pro 51.1 6E+02 0.013 31.9 35.8 109 195-324 1077-1193(1320)
247 KOG2264 Exostosin EXT1L [Signa 49.9 1E+02 0.0022 34.8 9.6 68 220-306 81-148 (907)
248 KOG0249 LAR-interacting protei 49.8 4.9E+02 0.011 30.6 18.0 21 390-410 233-253 (916)
249 PF07111 HCR: Alpha helical co 48.7 5E+02 0.011 30.4 63.7 43 391-433 525-567 (739)
250 PF07889 DUF1664: Protein of u 48.6 2.1E+02 0.0046 26.0 13.2 52 197-248 68-119 (126)
251 PLN02939 transferase, transfer 47.4 6.2E+02 0.013 31.0 30.8 48 425-472 354-401 (977)
252 KOG0239 Kinesin (KAR3 subfamil 47.1 5.4E+02 0.012 30.2 18.0 11 545-555 616-626 (670)
253 KOG4603 TBP-1 interacting prot 45.7 2E+02 0.0044 27.6 9.6 62 232-310 86-147 (201)
254 PF00418 Tubulin-binding: Tau 45.5 12 0.00025 25.5 1.1 18 526-543 12-29 (31)
255 TIGR02231 conserved hypothetic 44.9 2.9E+02 0.0062 31.1 12.8 39 214-252 134-172 (525)
256 PF10168 Nup88: Nuclear pore c 44.7 6E+02 0.013 30.1 24.9 30 224-253 638-667 (717)
257 PF15035 Rootletin: Ciliary ro 44.5 3E+02 0.0066 26.6 19.1 54 205-258 61-114 (182)
258 PF04899 MbeD_MobD: MbeD/MobD 44.4 1.7E+02 0.0038 23.8 9.1 44 215-258 18-61 (70)
259 PF05546 She9_MDM33: She9 / Md 44.3 3.3E+02 0.0071 27.0 14.6 55 241-312 11-65 (207)
260 PF13094 CENP-Q: CENP-Q, a CEN 44.3 2.7E+02 0.0059 26.0 11.9 54 14-67 4-59 (160)
261 PRK06231 F0F1 ATP synthase sub 44.2 3E+02 0.0066 27.0 11.3 19 513-531 165-183 (205)
262 PF05546 She9_MDM33: She9 / Md 44.0 3.3E+02 0.0072 26.9 17.9 38 202-239 37-74 (207)
263 PF12795 MscS_porin: Mechanose 43.9 3.5E+02 0.0075 27.1 22.9 156 353-508 41-211 (240)
264 KOG4360 Uncharacterized coiled 43.3 5.3E+02 0.011 29.1 23.3 92 343-454 205-296 (596)
265 PF06428 Sec2p: GDP/GTP exchan 43.2 36 0.00078 29.7 4.0 68 160-227 13-81 (100)
266 PRK10929 putative mechanosensi 42.6 7.7E+02 0.017 30.8 34.0 269 137-428 26-313 (1109)
267 KOG2008 BTK-associated SH3-dom 42.6 4.3E+02 0.0094 27.8 26.1 16 524-540 309-324 (426)
268 PRK00736 hypothetical protein; 42.3 1.8E+02 0.0038 23.5 7.7 21 164-184 7-27 (68)
269 PF06810 Phage_GP20: Phage min 41.7 2.8E+02 0.0061 26.1 10.2 11 204-214 34-44 (155)
270 COG1382 GimC Prefoldin, chaper 41.5 2.7E+02 0.0058 25.2 14.0 23 129-151 8-30 (119)
271 COG3096 MukB Uncharacterized p 41.4 6.7E+02 0.015 29.7 42.6 18 504-521 648-665 (1480)
272 PF04102 SlyX: SlyX; InterPro 41.3 1.6E+02 0.0035 23.6 7.4 32 163-194 5-36 (69)
273 PF15254 CCDC14: Coiled-coil d 41.2 6.8E+02 0.015 29.7 20.3 27 281-307 496-522 (861)
274 TIGR02977 phageshock_pspA phag 40.4 3.8E+02 0.0082 26.5 24.3 8 401-408 208-215 (219)
275 PRK00846 hypothetical protein; 40.4 2.2E+02 0.0047 23.7 8.2 46 161-206 12-57 (77)
276 KOG1962 B-cell receptor-associ 40.2 3.9E+02 0.0085 26.7 11.5 10 246-255 200-209 (216)
277 PF11932 DUF3450: Protein of u 40.1 4E+02 0.0088 26.8 19.8 52 163-214 43-94 (251)
278 PF10205 KLRAQ: Predicted coil 39.8 2.6E+02 0.0057 24.5 10.9 62 190-251 12-73 (102)
279 cd00632 Prefoldin_beta Prefold 39.7 2.5E+02 0.0054 24.3 11.3 28 187-214 10-37 (105)
280 PF05266 DUF724: Protein of un 39.3 3.7E+02 0.0081 26.2 14.3 23 122-144 84-106 (190)
281 PF02403 Seryl_tRNA_N: Seryl-t 39.1 2.5E+02 0.0055 24.2 10.5 31 281-311 69-99 (108)
282 PRK04325 hypothetical protein; 38.7 2.2E+02 0.0047 23.3 8.1 20 164-183 11-30 (74)
283 KOG1899 LAR transmembrane tyro 38.2 6.9E+02 0.015 28.9 19.5 45 214-258 170-214 (861)
284 PF10805 DUF2730: Protein of u 38.1 2.4E+02 0.0053 24.7 8.6 26 225-250 65-90 (106)
285 PRK15178 Vi polysaccharide exp 37.9 6E+02 0.013 28.2 17.9 97 188-303 240-338 (434)
286 PF05278 PEARLI-4: Arabidopsis 37.9 4.8E+02 0.01 27.0 14.9 61 197-257 200-260 (269)
287 PF14257 DUF4349: Domain of un 37.9 1.8E+02 0.0038 29.6 8.9 66 227-309 127-192 (262)
288 PF15290 Syntaphilin: Golgi-lo 37.5 4.9E+02 0.011 27.0 14.5 62 134-195 89-150 (305)
289 PF11830 DUF3350: Domain of un 37.4 25 0.00055 27.2 1.9 29 545-576 7-38 (56)
290 PF15188 CCDC-167: Coiled-coil 36.9 2E+02 0.0044 24.4 7.4 63 286-374 5-67 (85)
291 TIGR02977 phageshock_pspA phag 36.6 4.3E+02 0.0093 26.1 23.5 36 177-212 100-135 (219)
292 PF10267 Tmemb_cc2: Predicted 36.2 6.1E+02 0.013 27.7 15.9 46 243-306 273-318 (395)
293 PF03915 AIP3: Actin interacti 35.9 6.4E+02 0.014 27.9 16.7 21 111-131 156-176 (424)
294 PRK15396 murein lipoprotein; P 35.9 2.4E+02 0.0051 23.6 7.6 33 179-211 28-60 (78)
295 KOG2264 Exostosin EXT1L [Signa 35.4 2.6E+02 0.0057 31.7 9.9 17 524-540 558-574 (907)
296 PF13874 Nup54: Nucleoporin co 35.4 2.7E+02 0.0059 25.6 8.9 58 171-228 39-96 (141)
297 PF07798 DUF1640: Protein of u 35.3 4E+02 0.0087 25.4 21.5 18 221-238 76-93 (177)
298 PF03962 Mnd1: Mnd1 family; I 35.1 4.3E+02 0.0093 25.6 12.9 23 281-303 105-127 (188)
299 PF03962 Mnd1: Mnd1 family; I 35.0 4.3E+02 0.0093 25.6 13.4 24 281-304 137-160 (188)
300 PF05377 FlaC_arch: Flagella a 34.9 1.6E+02 0.0034 22.9 5.9 20 234-253 16-35 (55)
301 KOG0804 Cytoplasmic Zn-finger 34.8 6.7E+02 0.015 27.8 17.2 16 246-261 403-418 (493)
302 PRK04406 hypothetical protein; 34.7 2.6E+02 0.0056 23.0 8.2 6 246-251 46-51 (75)
303 KOG1937 Uncharacterized conser 34.3 6.9E+02 0.015 27.8 35.0 37 281-317 295-331 (521)
304 TIGR02449 conserved hypothetic 34.1 2.5E+02 0.0054 22.6 8.7 50 169-218 7-56 (65)
305 KOG4593 Mitotic checkpoint pro 34.0 8.3E+02 0.018 28.6 61.9 21 28-48 62-82 (716)
306 PRK09841 cryptic autophosphory 33.9 8.5E+02 0.018 28.7 16.4 18 281-298 341-358 (726)
307 PF12777 MT: Microtubule-bindi 33.8 6E+02 0.013 26.9 23.7 39 28-66 8-46 (344)
308 PF13094 CENP-Q: CENP-Q, a CEN 33.1 3.6E+02 0.0079 25.1 9.6 62 193-254 23-84 (160)
309 TIGR03752 conj_TIGR03752 integ 33.1 5.5E+02 0.012 28.7 12.0 15 418-432 76-90 (472)
310 PF08581 Tup_N: Tup N-terminal 33.1 2.9E+02 0.0063 23.0 11.6 32 288-319 41-72 (79)
311 PF05276 SH3BP5: SH3 domain-bi 32.1 5.5E+02 0.012 26.0 27.9 33 281-313 179-211 (239)
312 PF06120 Phage_HK97_TLTM: Tail 31.8 6.3E+02 0.014 26.6 15.9 37 219-255 75-111 (301)
313 PF08172 CASP_C: CASP C termin 31.7 5.6E+02 0.012 26.1 11.2 81 178-258 1-126 (248)
314 KOG1103 Predicted coiled-coil 31.7 6.7E+02 0.014 26.8 18.2 21 79-99 165-185 (561)
315 PF02994 Transposase_22: L1 tr 31.0 1.2E+02 0.0026 32.7 6.7 13 240-252 173-185 (370)
316 PF07439 DUF1515: Protein of u 30.7 3.6E+02 0.0077 24.0 8.1 59 203-261 7-69 (112)
317 PRK02793 phi X174 lysis protei 30.3 3E+02 0.0065 22.4 8.2 17 165-181 11-27 (72)
318 TIGR03017 EpsF chain length de 30.2 7.4E+02 0.016 26.9 25.5 18 289-306 218-235 (444)
319 PF10234 Cluap1: Clusterin-ass 29.5 6.5E+02 0.014 26.0 18.8 72 169-240 169-240 (267)
320 PRK13729 conjugal transfer pil 29.4 2E+02 0.0044 32.0 8.0 17 239-255 104-120 (475)
321 KOG3361 Iron binding protein i 29.1 35 0.00076 31.2 1.8 22 531-552 43-65 (157)
322 PF02994 Transposase_22: L1 tr 29.1 1.8E+02 0.0038 31.4 7.5 45 215-259 141-185 (370)
323 KOG0972 Huntingtin interacting 29.0 6.9E+02 0.015 26.1 15.9 12 110-121 202-213 (384)
324 PF06785 UPF0242: Uncharacteri 28.3 7.6E+02 0.016 26.4 19.3 137 122-258 73-220 (401)
325 smart00806 AIP3 Actin interact 27.8 8.6E+02 0.019 26.8 21.6 65 187-253 207-271 (426)
326 TIGR01069 mutS2 MutS2 family p 27.7 1.1E+03 0.024 28.1 14.5 15 30-44 224-238 (771)
327 TIGR01010 BexC_CtrB_KpsE polys 27.7 7.5E+02 0.016 26.2 18.7 60 155-214 170-231 (362)
328 PRK10869 recombination and rep 26.8 9.9E+02 0.021 27.2 27.4 230 215-472 154-385 (553)
329 PF00170 bZIP_1: bZIP transcri 26.5 3.1E+02 0.0067 21.3 8.4 48 450-497 15-62 (64)
330 PF04871 Uso1_p115_C: Uso1 / p 26.2 5.1E+02 0.011 23.8 13.9 31 225-255 84-114 (136)
331 TIGR01000 bacteriocin_acc bact 26.1 9.1E+02 0.02 26.6 23.0 15 292-306 242-256 (457)
332 KOG2010 Double stranded RNA bi 26.1 8.1E+02 0.018 26.0 12.7 58 193-250 150-207 (405)
333 KOG2991 Splicing regulator [RN 25.8 7.4E+02 0.016 25.4 22.1 173 126-310 107-295 (330)
334 PF15188 CCDC-167: Coiled-coil 25.4 2.6E+02 0.0057 23.7 6.2 29 397-425 39-67 (85)
335 PF05103 DivIVA: DivIVA protei 24.8 77 0.0017 28.3 3.3 46 167-212 30-75 (131)
336 PRK10698 phage shock protein P 24.6 7E+02 0.015 24.8 22.0 25 199-223 108-132 (222)
337 PF13747 DUF4164: Domain of un 24.1 4.5E+02 0.0097 22.3 12.5 44 130-173 7-50 (89)
338 PF05384 DegS: Sensor protein 24.1 6.2E+02 0.014 24.0 21.3 37 178-214 86-122 (159)
339 PF04871 Uso1_p115_C: Uso1 / p 23.9 5.7E+02 0.012 23.5 14.5 32 228-259 80-111 (136)
340 TIGR02338 gimC_beta prefoldin, 23.6 5E+02 0.011 22.7 12.5 34 184-217 11-44 (110)
341 KOG2685 Cystoskeletal protein 23.6 1E+03 0.022 26.2 34.4 125 31-155 58-195 (421)
342 PF14257 DUF4349: Domain of un 23.5 3.2E+02 0.007 27.6 7.9 62 179-245 128-189 (262)
343 PRK10698 phage shock protein P 23.3 7.5E+02 0.016 24.6 24.9 11 400-410 207-217 (222)
344 PRK10803 tol-pal system protei 23.3 5.2E+02 0.011 26.4 9.4 25 215-239 65-89 (263)
345 PF14988 DUF4515: Domain of un 23.3 7.3E+02 0.016 24.5 24.7 38 28-65 18-56 (206)
346 KOG0978 E3 ubiquitin ligase in 22.7 1.3E+03 0.028 27.2 57.1 25 335-359 481-505 (698)
347 PF05791 Bacillus_HBL: Bacillu 22.2 4.6E+02 0.0099 25.2 8.3 22 233-254 157-178 (184)
348 PF12001 DUF3496: Domain of un 22.0 5.7E+02 0.012 22.8 8.6 13 36-48 8-20 (111)
349 PRK13729 conjugal transfer pil 21.9 3.7E+02 0.008 30.1 8.3 19 232-250 104-122 (475)
350 PF05278 PEARLI-4: Arabidopsis 21.1 9.3E+02 0.02 24.9 18.4 61 199-259 195-255 (269)
351 PHA01750 hypothetical protein 20.8 4.5E+02 0.0098 21.2 6.4 28 177-204 43-70 (75)
352 KOG0249 LAR-interacting protei 20.7 1.4E+03 0.031 27.0 20.5 9 567-575 524-532 (916)
353 PF05791 Bacillus_HBL: Bacillu 20.4 7.3E+02 0.016 23.8 9.3 30 210-239 109-138 (184)
354 KOG0972 Huntingtin interacting 20.2 1E+03 0.022 25.0 17.8 68 219-299 288-355 (384)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.97 E-value=2.4e-25 Score=267.50 Aligned_cols=474 Identities=21% Similarity=0.291 Sum_probs=395.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHh
Q 008082 27 PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQD 106 (578)
Q Consensus 27 ~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~ 106 (578)
++.|++|+++|.+|.++|+.++..++++++.++++..++++ +..+|++..+++..+.++++++..++.+++++
T Consensus 1096 ~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~-------l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1096 QKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE-------LKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999998877766 77888888999999999999999999999999
Q ss_pred Hh---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 008082 107 RD---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE------------------KVAESEAAQTKHAESAYAEMQ 165 (578)
Q Consensus 107 ~e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle------------------~~~~ak~~~~k~~~~le~el~ 165 (578)
++ ..++..+..+|+.|...++.|.++++++++.++.++ ....++....+.++.+++++.
T Consensus 1169 leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~ 1248 (1930)
T KOG0161|consen 1169 LEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLS 1248 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 98 338888999999999999999999999998888776 466778888899999999999
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHH
Q 008082 166 NLRIELTETLS--------------LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE-------MLRSDGIKAT 224 (578)
Q Consensus 166 eL~~el~e~~~--------------eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le-------~l~~e~~~l~ 224 (578)
+++.++++... ++..+.+++++.+..++.+.+....+..+|++++..++ .+.+.+..+.
T Consensus 1249 elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~ 1328 (1930)
T KOG0161|consen 1249 ELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLE 1328 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99977775433 66778888999999999999999999999999999887 5555667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHH---HHH
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQL---RSA 301 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL---~s~ 301 (578)
..++.+...+++-......|...+++++.++..|+.+++. .+.. ...+..+..+.+...+..++..++.+ ...
T Consensus 1329 ~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~-~~~~---~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1329 HELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEE-EVLQ---RLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888888889988888999999999999999999998853 1110 01133344666677777777777776 478
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH---HHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHH--------
Q 008082 302 LDASETRYQEEYIQSTLQIRSA---YEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSIS-------- 370 (578)
Q Consensus 302 LE~aE~~lqeE~~~~~~el~~~---~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~-------- 370 (578)
|+.+..+|+.+..++++++.+. ...++......+..+++.....+.+..+++..+...+..+++++.+.
T Consensus 1405 Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE 1484 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8889999999999999888766 45555555566667777777888888888888888888888877766
Q ss_pred ------HHHHhHHHHhccc-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 371 ------EENEGLNLKIKTN-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERN 439 (578)
Q Consensus 371 ------ee~~~L~~ei~e~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~ 439 (578)
++|+.|..+|.++ ++|+++|++++.++.++.++.+|+++|+|+++.++.. +...++.+++ ++
T Consensus 1485 ~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~e--E~~~lr~~~~-----~~ 1557 (1930)
T KOG0161|consen 1485 QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAE--EDKKLRLQLE-----LQ 1557 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHH-----HH
Confidence 3788888888775 8999999999999999999999999999999999998 8888887777 77
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 440 KVNDEAISLA----EAARVAEREALMKVGFLTEEADKSSRR--------------AARVTEQLDAAQAASTEMEAELRKL 501 (578)
Q Consensus 440 ~~~~e~~~~l----e~a~~~~~~~~~kl~~l~~ele~~~~~--------------~~~l~eql~~ae~~~~~lEaEL~kl 501 (578)
+++.++.+.+ +.+...++.++..+..++..++...+. +.++..+++++++++..+...|+++
T Consensus 1558 ~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~ 1637 (1930)
T KOG0161|consen 1558 QLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKL 1637 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 7777777777 788899999999999999999987311 3355789999999999999999888
Q ss_pred HH-------hHHHHHHHHHHHHhh
Q 008082 502 KV-------QSDQWRKAAEAATAM 518 (578)
Q Consensus 502 r~-------q~eq~RkaaE~~~~~ 518 (578)
+. +.+..+++.+...+.
T Consensus 1638 q~~~k~lq~~~e~~~~~~~e~~~q 1661 (1930)
T KOG0161|consen 1638 QAQLKELQRELEDAQRAREELLEQ 1661 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 73 555666666655544
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.96 E-value=1.4e-30 Score=302.24 Aligned_cols=472 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHh
Q 008082 27 PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQD 106 (578)
Q Consensus 27 ~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~ 106 (578)
.++|++|+++|.+|+++|+.++..++++++.|+++..||+. |...|+++.+.+..++++.++|..||.+|+++
T Consensus 38 ~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~-------l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~ 110 (859)
T PF01576_consen 38 QKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEE-------LKERLEEAGGATQAQIELNKKREAELAKLRRD 110 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998766665 99999999999999999999999999999999
Q ss_pred Hh---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 008082 107 RD---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE------------------KVAESEAAQTKHAESAYAEMQ 165 (578)
Q Consensus 107 ~e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle------------------~~~~ak~~~~k~~~~le~el~ 165 (578)
++ ..|+..+..||++|...+++|..+++.+++.++.++ .+..++..+.+.++.+++++.
T Consensus 111 LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~ 190 (859)
T PF01576_consen 111 LEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLN 190 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Confidence 98 338889999999999999999999998888777666 788999999999999999999
Q ss_pred HHHHHHHHH--------------HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHH
Q 008082 166 NLRIELTET--------------LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE-------MLRSDGIKAT 224 (578)
Q Consensus 166 eL~~el~e~--------------~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le-------~l~~e~~~l~ 224 (578)
+++..+++. ..++.+|..++++.+..++.+.+....+..+|++++..++ .|...+..+.
T Consensus 191 El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le 270 (859)
T PF01576_consen 191 ELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLE 270 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHH
Confidence 999777643 3478889999999999999999999999999999999987 4445566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHH---HH
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLR---SA 301 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~---s~ 301 (578)
..+..+...++.-......|+..|++++.++..|+.+++. ++..... ...+-...|...+..+...++.+. +.
T Consensus 271 ~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~-e~~~~~E---elEeaKKkL~~~L~el~e~le~~~~~~~~ 346 (859)
T PF01576_consen 271 HELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE-EAEQRTE---ELEEAKKKLERKLQELQEQLEEANAKVSS 346 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH-HhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777789999999999999999999864 1110000 111225566777777777777774 77
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH---HHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHH--------
Q 008082 302 LDASETRYQEEYIQSTLQIRSAYEQLE---RAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSIS-------- 370 (578)
Q Consensus 302 LE~aE~~lqeE~~~~~~el~~~~e~l~---~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~-------- 370 (578)
|+.+..+|+.++.++++++.+...... .....++.-++++...+..+..+++.+........++++.|.
T Consensus 347 LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e 426 (859)
T PF01576_consen 347 LEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQE 426 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Confidence 788888999999999988776653332 222233333334445555555566666666666665555554
Q ss_pred ------HHHHhHHHHhccc-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 371 ------EENEGLNLKIKTN-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERN 439 (578)
Q Consensus 371 ------ee~~~L~~ei~e~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~ 439 (578)
++|+.|..+|.++ ++|+++|+|.+.++.|+.++.+++.+|+|.++.|+.. +...++.+++ ++
T Consensus 427 ~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~--E~~~lRl~~e-----l~ 499 (859)
T PF01576_consen 427 QLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE--EQKKLRLQVE-----LQ 499 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HH
Confidence 5888888888875 7899999999999999999999999999999999998 8888888887 88
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 440 KVNDEAISLA----EAARVAEREALMKVGFLTEEADKSS--------------RRAARVTEQLDAAQAASTEMEAELRKL 501 (578)
Q Consensus 440 ~~~~e~~~~l----e~a~~~~~~~~~kl~~l~~ele~~~--------------~~~~~l~eql~~ae~~~~~lEaEL~kl 501 (578)
+++.++.+.| +.+...++.++.+|+.|+.+|+... ..+.++..++++++..+..+...++++
T Consensus 500 ~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~ 579 (859)
T PF01576_consen 500 QLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKL 579 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 8888888887 7888889999999999999998862 233445788899998888888888887
Q ss_pred HH-------hHHHHHHHHHHHH
Q 008082 502 KV-------QSDQWRKAAEAAT 516 (578)
Q Consensus 502 r~-------q~eq~RkaaE~~~ 516 (578)
+. +.+..++..+...
T Consensus 580 q~qlkdlq~~lee~~~~~~~~~ 601 (859)
T PF01576_consen 580 QAQLKDLQRELEEAQRAREELR 601 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 74 4455454444433
No 3
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.89 E-value=6.3e-17 Score=179.58 Aligned_cols=223 Identities=28% Similarity=0.351 Sum_probs=172.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHh
Q 008082 27 PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE---SQQQLLEITTSEDTRVEELRQL 103 (578)
Q Consensus 27 ~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~---~~~~~~~~~e~ek~r~~El~kl 103 (578)
+-+....+.+|+.++++|.+.+.++..+++.|.++..||+.+|+.+++|+.+|+. +..++...+++.+.|..++.+-
T Consensus 26 ~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~ 105 (522)
T PF05701_consen 26 LERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQG 105 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhh
Confidence 4678889999999999999999999999999999999999999999999999997 5578888999999999999663
Q ss_pred hHh-HhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 104 SQD-RDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLK 182 (578)
Q Consensus 104 ~~~-~e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~ 182 (578)
... ....|+.+|+.++.+|..++.+|....+||.++|..|..+..++..++++++.+..-.......+.++..+|..++
T Consensus 106 ~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lk 185 (522)
T PF05701_consen 106 IAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALK 185 (522)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3355999999999999999999999999999999999999999999999999998766555555555555555555
Q ss_pred HHHhHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 183 NELSYCKESES-----------QALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKL 251 (578)
Q Consensus 183 ~~l~e~e~~~s-----------~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL 251 (578)
..+........ .....+..|...|+.+...+..|..++ .....+...|+.....+..|..++...
T Consensus 186 e~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~ 261 (522)
T PF05701_consen 186 ESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAA 261 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444332222 223455666667777777777776665 333444445555555555555555544
Q ss_pred HH
Q 008082 252 QN 253 (578)
Q Consensus 252 ~~ 253 (578)
..
T Consensus 262 ~~ 263 (522)
T PF05701_consen 262 KE 263 (522)
T ss_pred HH
Confidence 43
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.85 E-value=7e-16 Score=186.71 Aligned_cols=437 Identities=23% Similarity=0.276 Sum_probs=318.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHHhhHhH
Q 008082 31 SELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE---SQQQLLEITTSEDTRVEELRQLSQDR 107 (578)
Q Consensus 31 ~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~---~~~~~~~~~e~ek~r~~El~kl~~~~ 107 (578)
+-+++++.+++..+.....+++..-..+..+..|+..+.+++++....+.. .......+++-.+..+.+-.+-+..+
T Consensus 1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l 1320 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSAL 1320 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888877777777777777776666666655544333 22222333333232222222222222
Q ss_pred h---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHH
Q 008082 108 D---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLE-----------------------------KVAESEAAQTK 155 (578)
Q Consensus 108 e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle-----------------------------~~~~ak~~~~k 155 (578)
. ..++.+...++.++..+...++...-++.++.+++- .+...-..+..
T Consensus 1321 ~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~ 1400 (1930)
T KOG0161|consen 1321 ENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANA 1400 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 114444555555555555544444443333333222 11111111111
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008082 156 HAESAY-------AEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYN 228 (578)
Q Consensus 156 ~~~~le-------~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~ 228 (578)
.+..++ .++..+..++......+..+..+....+..++.|....+.+...++.++.+...+.+++..+...++
T Consensus 1401 ~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~le 1480 (1930)
T KOG0161|consen 1401 KNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALE 1480 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122222 2222222333333344566677777778888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 229 TLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETR 308 (578)
Q Consensus 229 ~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~ 308 (578)
.+...+++++++++.+..+|.++...+.+. ++. +++|++.+..++.++.+|+.+|++++..
T Consensus 1481 e~~e~~e~l~renk~l~~ei~dl~~~~~e~-~k~------------------v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEIEDLEEQKDEG-GKR------------------VHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887 332 9999999999999999999999999999
Q ss_pred HH-HHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHH----HHHHHHHHHHhHhHHHHHhh-HHHHHHhHHHHhcc
Q 008082 309 YQ-EEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNV----KAQIEELRANLLDKETELQS-ISEENEGLNLKIKT 382 (578)
Q Consensus 309 lq-eE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~----~~eleel~~~l~d~E~eL~~-L~ee~~~L~~ei~e 382 (578)
++ ++..++++++. +.++++++++++.+...+++.. ...++.++..+ +.|++.++ +..-.++|..+|++
T Consensus 1542 le~eE~~~lr~~~~-----~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~L-e~E~r~k~e~~r~KKkle~di~e 1615 (1930)
T KOG0161|consen 1542 LEAEEDKKLRLQLE-----LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAEL-EAETRSKSEALRSKKKLEGDINE 1615 (1930)
T ss_pred hhhhhhHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhhhhhhcchHH
Confidence 98 77777788877 8999999999999888777766 45567788855 68888777 55677788888887
Q ss_pred c-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 008082 383 N-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAER 457 (578)
Q Consensus 383 ~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~ 457 (578)
+ ++|+...++.+.++++...+.+|+..+++.-+..+.+..+...+.+++..+.++ ..++...++.+.+++
T Consensus 1616 lE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E----~eeL~~~l~~~~Rar- 1690 (1930)
T KOG0161|consen 1616 LEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAE----LEELREKLEALERAR- 1690 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
Confidence 4 889999999999999999999999999999999999999999999999977777 677778888888887
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~ 503 (578)
+.++.++++....+..+..+....-..+..|+++|..|+.
T Consensus 1691 ------r~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ 1730 (1930)
T KOG0161|consen 1691 ------RQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQS 1730 (1930)
T ss_pred ------HhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 6677788888888888888888888888888888888874
No 5
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.71 E-value=9.9e-19 Score=203.71 Aligned_cols=314 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSD-------GIKATEAYNTLSLELELSKARVKSLE 245 (578)
Q Consensus 173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e-------~~~l~~~~~~l~~eLe~~~~e~~~Le 245 (578)
++...++.++..+..++....+++..+..+...|+..+..+..|.+. +..|...+..+..+++.+..+...+.
T Consensus 332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~ 411 (859)
T PF01576_consen 332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE 411 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444555555555555555555555555555555444433332 23333344444444444444555555
Q ss_pred HHHHHHHHHHHhhh---------hhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008082 246 ELVSKLQNDLLNSS---------NKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQ-EEYIQ 315 (578)
Q Consensus 246 ~ei~kL~~el~~~~---------~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lq-eE~~~ 315 (578)
.+|..|...+.... ++...+++.++.+++.+.+..+|+|.+.+..|+.++.+++..|+++++.++ .+...
T Consensus 412 te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~ 491 (859)
T PF01576_consen 412 TELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKK 491 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443333 122333444444455555666999999999999999999999999999998 66777
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHH----HHHHHHHHHHhHhHHHHHhh-HHHHHHhHHHHhccc-----cc
Q 008082 316 STLQIRSAYEQLERAKSESSQREADLETELKNV----KAQIEELRANLLDKETELQS-ISEENEGLNLKIKTN-----ES 385 (578)
Q Consensus 316 ~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~----~~eleel~~~l~d~E~eL~~-L~ee~~~L~~ei~e~-----~~ 385 (578)
+++++. +.+++.++.+++.+.+.+++.+ ...|..++..| +.|.+.++ +...++.|..+|.++ .+
T Consensus 492 lRl~~e-----l~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L-E~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~ 565 (859)
T PF01576_consen 492 LRLQVE-----LQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL-EEERKERAEALREKKKLESDLNELEIQLDHA 565 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-----HHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788877 9999999999999888888777 67788888888 67777666 778999999999986 78
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 386 NQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGF 465 (578)
Q Consensus 386 ~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~ 465 (578)
|+...++.+.++++...+.+|+..|++.......+...+..+.+++..+.++ .+++...++.+.+++ +.
T Consensus 566 n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~e----lee~~~~~~~a~r~r-------k~ 634 (859)
T PF01576_consen 566 NRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAE----LEELREALEQAERAR-------KQ 634 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HH
Confidence 9999999999999999999999999999999999988888888888866666 667777777777777 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 466 LTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 466 l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~ 503 (578)
++.++++....+..+..+.......+..|++++..|..
T Consensus 635 aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~ 672 (859)
T PF01576_consen 635 AESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEE 672 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777774
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.38 E-value=4.6e-06 Score=99.14 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 008082 390 SKLAVELNKLEAEVVEFKASILDKETELMSL 420 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~ 420 (578)
.++...+.+++ ++.++...+.+.+..+..+
T Consensus 582 ~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~ 611 (880)
T PRK02224 582 AELKERIESLE-RIRTLLAAIADAEDEIERL 611 (880)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45555555555 4555555555444444433
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=99.36 E-value=5.9e-06 Score=98.25 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 365 ELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENR 434 (578)
Q Consensus 365 eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~ 434 (578)
++..+......+..++..+. ...++...+..++.++.+++..+.+.+.....+..+...++.++..+
T Consensus 573 ~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443332 14566666666666666666666666665556666666666666554
No 8
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.17 E-value=3.8e-05 Score=88.55 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=45.7
Q ss_pred CCCCCCccccCcchhhH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 16 SPRSPALEKQRPSRVSE-LESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQL 86 (578)
Q Consensus 16 ~~~~~~~~~~~~~~~~e-Le~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~ 86 (578)
.|-||-. +|.+.+.. -.+++.-++++|........++..+-..++.+| .+..++..+...++.+....
T Consensus 35 ~fwspEl--krer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~ 103 (775)
T PF10174_consen 35 TFWSPEL--KRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEF 103 (775)
T ss_pred cccchhh--HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhccccc
Confidence 3445544 55554444 346677777777777766667778888888888 88888777777776654433
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=8.4e-05 Score=91.96 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE 306 (578)
...|+..+..+..++..+...+..++
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~ 908 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAK 908 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.12 E-value=1.3e-05 Score=97.57 Aligned_cols=35 Identities=9% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 468 EEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 468 ~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
.+++....+...+..++..+......+..-+..|.
T Consensus 979 ~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777778888888888888888887766
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.06 E-value=0.00011 Score=84.73 Aligned_cols=235 Identities=24% Similarity=0.318 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 008082 134 NEIQRLKFQLEKVAESEAAQTKHAESAYA-------EMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQL 206 (578)
Q Consensus 134 ~el~klr~qle~~~~ak~~~~k~~~~le~-------el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qL 206 (578)
++|..+++.++.+..-+..-.+..+.... .+..+..+|.....++..+..++..+.........-|..+...|
T Consensus 252 ~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl 331 (775)
T PF10174_consen 252 DEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESL 331 (775)
T ss_pred HHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35555555554333333333333222222 23444444445555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHH
Q 008082 207 ETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKG 286 (578)
Q Consensus 207 Eea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~ 286 (578)
...+.....|.+++..+...++.....++.-...+..++.+.+.+..+|.+++..++ -...+|..|.+
T Consensus 332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d------------~~e~ki~~Lq~ 399 (775)
T PF10174_consen 332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD------------KKERKINVLQK 399 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 666666666666666666666666666666665666666666666666666554432 01123555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHhhhhh----HhHHhHHHHHHHHHH
Q 008082 287 ELDLARNELRQLRSALDASETRYQ------------EEYIQSTLQIRSAYEQLERAKSESS----QREADLETELKNVKA 350 (578)
Q Consensus 287 el~~le~EieeL~s~LE~aE~~lq------------eE~~~~~~el~~~~e~l~~~k~E~~----qr~~el~~el~~~~~ 350 (578)
.+..+...+..=...+.....++. ..+.....+..+.++.++......+ ..+..+..++..+..
T Consensus 400 kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~ 479 (775)
T PF10174_consen 400 KIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA 479 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444433344444444443 2222222333333333333322111 122224466666666
Q ss_pred HHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082 351 QIEELRANLLDKETELQSISEENEGLNLKI 380 (578)
Q Consensus 351 eleel~~~l~d~E~eL~~L~ee~~~L~~ei 380 (578)
.++.|+..+.+..+.|-.++++..+|..-.
T Consensus 480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~ 509 (775)
T PF10174_consen 480 KLESLQKELSEKELQLEDAKEEASKLASSQ 509 (775)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHHHHHhhcc
Confidence 666677777666666665555555554433
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.05 E-value=0.00021 Score=87.08 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDAS 305 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~a 305 (578)
+..+..++..++..+..+...+..+
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 13
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.04 E-value=0.00025 Score=86.87 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 198 DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 198 ~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
....+..+|..+...++.+......+...+..+...++.+...+.+|...|.........+
T Consensus 831 l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l 891 (1822)
T KOG4674|consen 831 LTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNL 891 (1822)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 3334444555555555555555555555555554445544444444444444444444333
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=0.00048 Score=85.33 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 008082 451 AARVAEREALMKVGFLTEEADK 472 (578)
Q Consensus 451 ~a~~~~~~~~~kl~~l~~ele~ 472 (578)
.+....+.+..++..++.+|++
T Consensus 1072 ~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1072 LALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3334445666666677777744
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.92 E-value=0.00063 Score=82.97 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008082 343 TELKNVKAQIEELRANL 359 (578)
Q Consensus 343 ~el~~~~~eleel~~~l 359 (578)
.++..+...++.+...+
T Consensus 677 ~e~~~l~~~~~~l~~~l 693 (1179)
T TIGR02168 677 REIEELEEKIEELEEKI 693 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.91 E-value=0.00068 Score=83.08 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 468 EEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 468 ~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
.+.+....+...+..+......++..+..-+..+.
T Consensus 970 ee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d 1004 (1163)
T COG1196 970 EEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666666666666666666666665544
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.00079 Score=80.19 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 282 DKLKGELDLARNELRQLRSALDASETRY 309 (578)
Q Consensus 282 ~eL~~el~~le~EieeL~s~LE~aE~~l 309 (578)
..+..++..++.++..+...+..++..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~ 482 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKEL 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444444333
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.84 E-value=0.0011 Score=80.94 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE 306 (578)
+..+...+..+..++..+...+..++
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~ 701 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIE 701 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.76 E-value=0.00079 Score=74.34 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 469 EADKSSRRAARVTEQLDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 469 ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~ 503 (578)
.|-+..+.+.++...+..++.-+..+..+-..|..
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~ 445 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLE 445 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666677777777777666666655553
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.74 E-value=0.0023 Score=78.51 Aligned_cols=45 Identities=36% Similarity=0.512 Sum_probs=21.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082 336 QREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI 380 (578)
Q Consensus 336 qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei 380 (578)
.++..+..++..+...++.++..+...+..+..+......|...+
T Consensus 737 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 781 (1163)
T COG1196 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445555555555555555544444444444
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.68 E-value=0.0014 Score=72.52 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008082 152 AQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLS 231 (578)
Q Consensus 152 ~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~ 231 (578)
.+..+...++..+..+..+..+....+..++.-..+.+.....++..+..+..++.........+..+...+...+..+.
T Consensus 217 e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33344445666666666666555555555554444455555555555555555554444444444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008082 232 LELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 232 ~eLe~~~~e~~~Le~ei~kL~ 252 (578)
..+..++..+.-|..+++.+.
T Consensus 297 e~lqaSqq~~~~L~~EL~~~~ 317 (546)
T PF07888_consen 297 EQLQASQQEAELLRKELSDAV 317 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444444444433
No 22
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.67 E-value=0.0017 Score=72.95 Aligned_cols=169 Identities=24% Similarity=0.311 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc-----ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082 343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTN-----ESNQRDSKLAVELNKLEAEVVEFKASILDKETEL 417 (578)
Q Consensus 343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~-----~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~l 417 (578)
.++...+.++..++.+.......+.+|..+...+..++.-. .+.....++...+.++..+...++.-.......+
T Consensus 316 ~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~ 395 (522)
T PF05701_consen 316 SELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEV 395 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444211 1122234555555555566666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------------------HHH---
Q 008082 418 MSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEA---------------------DKS--- 473 (578)
Q Consensus 418 q~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~el---------------------e~~--- 473 (578)
..+..+...++..+...+.. ...+...+++++.++.-+...++.+.... ...
T Consensus 396 ~~~k~E~e~~ka~i~t~E~r----L~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~k 471 (522)
T PF05701_consen 396 EKAKEEAEQTKAAIKTAEER----LEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKK 471 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHH
Confidence 55555555555555533332 33334444556666655555555443211 111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082 474 --------SRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA 515 (578)
Q Consensus 474 --------~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~ 515 (578)
..++.....|++++......+..-|..+..+++..|.+.+.+
T Consensus 472 a~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~A 521 (522)
T PF05701_consen 472 AEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEA 521 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 123333456666666666666665655555666655555443
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=98.65 E-value=0.003 Score=75.23 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 278 NEEIDKLKGELDLARNELRQLRSALDAS 305 (578)
Q Consensus 278 ~eei~eL~~el~~le~EieeL~s~LE~a 305 (578)
..++.+|...+..+..++..+...+...
T Consensus 458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 458 TAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666665555443
No 24
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.65 E-value=0.0043 Score=76.46 Aligned_cols=298 Identities=21% Similarity=0.232 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET 208 (578)
Q Consensus 129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEe 208 (578)
+.+...++..++.+++.......=+..+.+-++..+.-++.+++.+...-..+...+..-+..+..+...+..+...++.
T Consensus 663 ~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~ 742 (1822)
T KOG4674|consen 663 FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEK 742 (1822)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56666677888888887777666666655555555555555555555544555555555555555555555555566666
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHH
Q 008082 209 ANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGEL 288 (578)
Q Consensus 209 a~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el 288 (578)
+...+..|..+..-+......|..+++.+-.+...|+-.+..++........-. ......++..+
T Consensus 743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~---------------~~~k~~~e~~i 807 (1822)
T KOG4674|consen 743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESE---------------MATKDKCESRI 807 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 666666666665555666666667777776766666666666666554442211 11133333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhh
Q 008082 289 DLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQS 368 (578)
Q Consensus 289 ~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~ 368 (578)
..+..++..|+..++.-...+..-......++..+...++...+++.. +-..+..+...++.+...+.+.+..|+.
T Consensus 808 ~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~----~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 808 KELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKS----LLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333333333334444444444433333332 2233333344444444444444444443
Q ss_pred HHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008082 369 ISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISL 448 (578)
Q Consensus 369 L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~ 448 (578)
.......|... .++...+-+...++....++..|+.+|.+....+......+..+..-+...-+.+....-.+.+.
T Consensus 884 ~~~~~~~l~~~----~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ 959 (1822)
T KOG4674|consen 884 AKTQLLNLDSK----SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAK 959 (1822)
T ss_pred hHHHHhhcccc----chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333333321 00334455555567777777777888877777776666666665555554444443333344444
Q ss_pred H
Q 008082 449 A 449 (578)
Q Consensus 449 l 449 (578)
+
T Consensus 960 i 960 (1822)
T KOG4674|consen 960 I 960 (1822)
T ss_pred H
Confidence 4
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.64 E-value=0.00098 Score=69.69 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=56.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008082 401 AEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV 480 (578)
Q Consensus 401 ~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l 480 (578)
.++..++..+......+..+...+..|...|..++.... .....+...+..++.++......+...
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~--------------~~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD--------------EEREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH--------------HHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 444555555544455555555555555555553322211 112244556677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 481 TEQLDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 481 ~eql~~ae~~~~~lEaEL~klr~ 503 (578)
...+...-..+-.|+.||..+|.
T Consensus 282 ~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 282 LREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888888899999999988873
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.58 E-value=0.00066 Score=70.98 Aligned_cols=223 Identities=17% Similarity=0.243 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
..+|..++..+.++-...+++...+..+...+++++..++........++..+..+...++......-.|+..|..|..+
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 33555555555555555555555555566666666555555555555566666666666666555555666666666666
Q ss_pred HHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhh
Q 008082 255 LLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAY-EQLERAKSE 333 (578)
Q Consensus 255 l~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~-e~l~~~k~E 333 (578)
+.-.+.-+.. ++.++...+. .....++. . .--..|..+|.++...|.........++...| ..+..+.
T Consensus 133 l~fl~~~hee-Ei~~L~~~~~--~~~~~e~~----~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~-- 201 (312)
T PF00038_consen 133 LEFLKQNHEE-EIEELREQIQ--SSVTVEVD----Q--FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELR-- 201 (312)
T ss_dssp HHHHHHHHHH-HHHTTSTT------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhhhhh-hhhhhhhccc--cccceeec----c--cccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccc--
Confidence 6555443321 1111111110 00000000 0 00111233333333333322222223333333 1122111
Q ss_pred hhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc--ccccchHHHHHHHHHHHHHHHHHHHHh
Q 008082 334 SSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTN--ESNQRDSKLAVELNKLEAEVVEFKASI 410 (578)
Q Consensus 334 ~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~--~~~k~~~El~k~~kkle~e~~eLk~~L 410 (578)
.........+...+.++..++..+.....++.+|...+..|...|.++ ........+...+..++.++..++..+
T Consensus 202 --~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 202 --QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 111123344445666666666666666666667777777777766443 112223334444444444444444444
No 27
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.54 E-value=0.00068 Score=74.83 Aligned_cols=278 Identities=17% Similarity=0.229 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE 190 (578)
Q Consensus 111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~ 190 (578)
|..+...++--|...+..+...+++. ...+.........+..++.+++..+..+...+...+.++.+...
T Consensus 79 ~~~~ts~ik~~ye~El~~ar~~l~e~----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~ 148 (546)
T KOG0977|consen 79 VGRETSGIKAKYEAELATARKLLDET----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS 148 (546)
T ss_pred ccCCCcchhHHhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 44444444444555544444443333 33333333444466677777777777776666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 008082 191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVH 270 (578)
Q Consensus 191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~ 270 (578)
.++.+...+.-+......+...+..|..+...+...+..+..+++.----...++..+..|..+|.-+..-+.
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~------- 221 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK------- 221 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH-------
Confidence 6666666666666666666666666666666666666666666665444445555666666666655544321
Q ss_pred ccccccchhHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhhhhHh--HH-h
Q 008082 271 LSQKNGENEEIDKLKGELD-----LA-RNELRQLRSALDASETRYQEEYIQSTLQIRSAY-EQLERAKSESSQR--EA-D 340 (578)
Q Consensus 271 ~~~~~e~~eei~eL~~el~-----~l-e~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~-e~l~~~k~E~~qr--~~-e 340 (578)
.+|.++..... .. +.=-.+|..+|.+....|..-...-+.+++..| .-+..++.....- .. .
T Consensus 222 --------~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~ 293 (546)
T KOG0977|consen 222 --------QEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNY 293 (546)
T ss_pred --------HHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence 22322222221 01 111133445555555555544444445555555 2334343211111 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 008082 341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSL 420 (578)
Q Consensus 341 l~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~ 420 (578)
..+++..+...+..|++.+.+.+.....|......|...+. .+..-..+.|.++++.+..+
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~-------------------e~~r~~e~~L~~kd~~i~~m 354 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD-------------------EDQRSFEQALNDKDAEIAKM 354 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh-------------------hhhhhhhhhhhhHHHHHHHH
Confidence 33667777777788888888777775555444444444442 22333445555555555555
Q ss_pred HHHHHHHHHHHH
Q 008082 421 TEQNGMLKMEIE 432 (578)
Q Consensus 421 ~~E~~~lk~~i~ 432 (578)
+++...+-.++.
T Consensus 355 Reec~~l~~Elq 366 (546)
T KOG0977|consen 355 REECQQLSVELQ 366 (546)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 28
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.46 E-value=0.0065 Score=69.36 Aligned_cols=322 Identities=17% Similarity=0.234 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHh
Q 008082 31 SELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKA 110 (578)
Q Consensus 31 ~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~ 110 (578)
-+|.+|+.+|.+.|+..|-.++. .+..+ .||+..+-++.. +.+.+-+.+.++..-.+++.. .+..
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~E---Dk~Kl-~Elekmkiqleq----lqEfkSkim~qqa~Lqrel~r---aR~e---- 291 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAE---DKAKL-KELEKMKIQLEQ----LQEFKSKIMEQQADLQRELKR---ARKE---- 291 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh---hHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHH----
Confidence 45999999999999988765543 23332 245443333221 222222222222111111111 1111
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE 190 (578)
Q Consensus 111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~ 190 (578)
..++-..+.+|... +..+--.+|++.--|.-++-.++.+..++..++..++++...++-|+....+--.
T Consensus 292 -~keaqe~ke~~k~e----------mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~ 360 (1243)
T KOG0971|consen 292 -AKEAQEAKERYKEE----------MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS 360 (1243)
T ss_pred -HHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11122222233333 3333334566666677777788888889999999999888888888877554321
Q ss_pred HH-HHHH---HHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082 191 SE-SQAL---EDVRKSQMQLETANANLEMLRS----DGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL 262 (578)
Q Consensus 191 ~~-s~l~---~~~~el~~qLEea~~~le~l~~----e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~ 262 (578)
.. ..-. ..++.....|.++=-.++.+.. +..++...++....+++++++....|..++..+++.|.+++...
T Consensus 361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0001 1223333334433333333222 23444445555555555555544455555555555554444322
Q ss_pred hhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHH
Q 008082 263 AESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLE 342 (578)
Q Consensus 263 ~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~ 342 (578)
++--+.+. =.....+.--+|+..+..|+.+|..|. ++++....|++-...+..+++..+..+.--+.+..+++...+
T Consensus 441 DAAlGAE~--MV~qLtdknlnlEekVklLeetv~dlE-alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq 517 (1243)
T KOG0971|consen 441 DAALGAEE--MVEQLTDKNLNLEEKVKLLEETVGDLE-ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ 517 (1243)
T ss_pred HHhhcHHH--HHHHHHhhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 21000000 000111222345556666677777663 344455555555555556677666666655667777777777
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhc
Q 008082 343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIK 381 (578)
Q Consensus 343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~ 381 (578)
.-+-.....|-.++......-.-++.+.+++.....+..
T Consensus 518 et~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~ 556 (1243)
T KOG0971|consen 518 ETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQ 556 (1243)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence 777777777777777766666666666665555555543
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.29 E-value=0.016 Score=66.39 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008082 479 RVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAM 518 (578)
Q Consensus 479 ~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~ 518 (578)
+-.-++...-+=..+++.+|+.+ +..+.|+-+..-.|-
T Consensus 567 dyk~~fa~skayaraie~Qlrqi--Ev~~a~rh~~~l~AF 604 (1243)
T KOG0971|consen 567 DYKIKFAESKAYARAIEMQLRQI--EVAQANRHMSLLTAF 604 (1243)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 33556666666667788888865 467778887777665
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.20 E-value=0.0051 Score=62.06 Aligned_cols=217 Identities=17% Similarity=0.278 Sum_probs=140.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhHHHHHHHhh
Q 008082 28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQ---LLEITTSEDTRVEELRQLS 104 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~---~~~~~e~ek~r~~El~kl~ 104 (578)
+++..+...+..+.+.+......+..++....++..++..+.+.+..+...|+.+... +......-.++..+.....
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888877776666654331 1111111112222221111
Q ss_pred HhHhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 105 QDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNE 184 (578)
Q Consensus 105 ~~~e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~ 184 (578)
+.++ ..+..+- +-+..+-.+|..+...-..+......+...+..+...|..+..-++.+-.+
T Consensus 81 k~lE-----------~r~~~~e-------eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k 142 (237)
T PF00261_consen 81 KVLE-----------NREQSDE-------ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK 142 (237)
T ss_dssp HHHH-----------HHHHHHH-------HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 1111 1111221 123334444444444445555555566666666666666666667777777
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082 185 LSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL 262 (578)
Q Consensus 185 l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~ 262 (578)
+.+++..+......+..+....+.+....+.+...+..|...+.......+.....+..|+..|..|..+|..++.++
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777778788888877788888888888888888888888887654
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.12 E-value=0.024 Score=62.95 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008082 391 KLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEA 470 (578)
Q Consensus 391 El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~el 470 (578)
-+.-.++.+-..+..|+++|.|.|..-..+......|..++.. ..+ -....|.+-..++
T Consensus 293 ~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e-----------------~~r----~~e~~L~~kd~~i 351 (546)
T KOG0977|consen 293 YAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE-----------------DQR----SFEQALNDKDAEI 351 (546)
T ss_pred HHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh-----------------hhh----hhhhhhhhHHHHH
Confidence 3444555666788888888877777777666666666665551 111 1122334445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 471 DKSSRRAARVTEQLDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 471 e~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~ 503 (578)
..+...|..+.-.+...---+-.|.+||..+|.
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 666777777777788888888889999998874
No 32
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.05 E-value=0.012 Score=59.36 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANL 213 (578)
Q Consensus 175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l 213 (578)
..++..|+.++..++....+....+..+...|+.+...+
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333444443333333333333333333333333333
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.00 E-value=0.1 Score=64.50 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHhhhcc
Q 008082 504 QSDQWRKAAEAATAMLSA 521 (578)
Q Consensus 504 q~eq~RkaaE~~~~~L~~ 521 (578)
+..+.++..+.--.+|+.
T Consensus 914 l~~~l~~~~~~f~~~l~~ 931 (1201)
T PF12128_consen 914 LREELKKAVERFKGVLTK 931 (1201)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455666666666666643
No 34
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.86 E-value=0.083 Score=59.12 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008082 444 EAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAM 518 (578)
Q Consensus 444 e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~ 518 (578)
.+...++.++....++....-.++.+++....+++.+.. .+...+.....+|.-.....++.+|.++..-+.
T Consensus 715 ~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~---e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~ 786 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV---EIRELKRKHKQELQEVLLHVELIQKDLEREKAS 786 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHH
Confidence 455566666666667777777778888877766665432 233445555555554444566667777665443
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.84 E-value=0.13 Score=60.60 Aligned_cols=70 Identities=27% Similarity=0.249 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008082 152 AQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGI 221 (578)
Q Consensus 152 ~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~ 221 (578)
.+...+..++.++.....+...+++.|.+.+...+++.....++-...+.+..+.+...++++.|-..+.
T Consensus 1412 ~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1412 GALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555666666666655544443
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.84 E-value=0.18 Score=62.27 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
++.++.+...+...+..+......+....+.....|...+.++..++..+..|...+
T Consensus 478 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 478 LEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444455555555555556666666666666666666554
No 37
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.82 E-value=0.099 Score=58.71 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHh-----
Q 008082 34 ESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRD----- 108 (578)
Q Consensus 34 e~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e----- 108 (578)
+..+..+..+|..-+..++..+-......+-|-.++...+-|...|++.+.........-+.....+.....-+.
T Consensus 253 en~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e 332 (786)
T PF05483_consen 253 ENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE 332 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444554444555555555555555556666666666677776665554433333333333333222111
Q ss_pred -HhHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 008082 109 -KAWQSELDAVQKQQSMDSAALGSAMNEIQR 138 (578)
Q Consensus 109 -~~~~~ele~~r~~~~~~~~~L~~~~~el~k 138 (578)
.+--.++-.++-.|+..++.+...+..|+.
T Consensus 333 Ke~~~Ee~nk~k~~~s~~v~e~qtti~~L~~ 363 (786)
T PF05483_consen 333 KEAQMEELNKAKAQHSFVVTELQTTICNLKE 363 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223345555676666666666554443
No 38
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.82 E-value=0.095 Score=58.40 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL 262 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~ 262 (578)
.+....+...+..+...+.+|+..+.....++...+..+
T Consensus 188 ~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 333444444444555555555555555555555555554
No 39
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.72 E-value=0.18 Score=58.79 Aligned_cols=83 Identities=13% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008082 390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREM--ERNKVNDEAISLAEAARVAEREALMKVGFLT 467 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~--e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~ 467 (578)
.++...++.+......+..++++.+..+-.+-.+|.-|-.+|..+-. ..++..+.-...++-....-+.+...+..+.
T Consensus 512 ~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alr 591 (1195)
T KOG4643|consen 512 NELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALR 591 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888888888888888888899988888875544 3333333334344433333334444444444
Q ss_pred HHHHH
Q 008082 468 EEADK 472 (578)
Q Consensus 468 ~ele~ 472 (578)
.+.++
T Consensus 592 rhke~ 596 (1195)
T KOG4643|consen 592 RHKEK 596 (1195)
T ss_pred HHHHH
Confidence 33333
No 40
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.69 E-value=0.00015 Score=84.54 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 279 EEIDKLKGELDLARNELRQLRSALDASETR 308 (578)
Q Consensus 279 eei~eL~~el~~le~EieeL~s~LE~aE~~ 308 (578)
..++.|++.+.-+-.|++-|+..|...+..
T Consensus 399 ~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 399 KLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 347788888888888888888888776544
No 41
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.69 E-value=0.2 Score=58.46 Aligned_cols=84 Identities=20% Similarity=0.176 Sum_probs=66.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANL--EMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l--e~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
.++-++.++++++....-+...++=+..||..+...- -++++++..+...++.+..+.+..+.....|..+++.|..+
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444777888888888888888888888888887777 47888888888888888888888888888888888888776
Q ss_pred HHhhhh
Q 008082 255 LLNSSN 260 (578)
Q Consensus 255 l~~~~~ 260 (578)
-..+-+
T Consensus 338 ~eqL~~ 343 (1195)
T KOG4643|consen 338 KEQLDG 343 (1195)
T ss_pred HHHhhh
Confidence 555543
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.23 Score=58.04 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=66.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260 (578)
Q Consensus 181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~ 260 (578)
+..++.+|+..++.++..+......++-++.++.....+...+-..|.....+++.++.++..|...+..|...++....
T Consensus 397 l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~ 476 (1174)
T KOG0933|consen 397 LEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEA 476 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 66677777778888777777777777777777777776666666666666666666666555555555555544432211
Q ss_pred hhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 261 KLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSAL 302 (578)
Q Consensus 261 k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~L 302 (578)
..+....|...+..+..+++.|.+++
T Consensus 477 ----------------l~q~~~~l~~~~~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 477 ----------------LKQRRAKLHEDIGRLKDELDRLLARL 502 (1174)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11224555555566666666665544
No 43
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.60 E-value=0.23 Score=56.56 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc-------ccccchHHHHHH-HHHHHHHHHHHHHHhHhHHHHHHHH
Q 008082 349 KAQIEELRANLLDKETELQSISEENEGLNLKIKTN-------ESNQRDSKLAVE-LNKLEAEVVEFKASILDKETELMSL 420 (578)
Q Consensus 349 ~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~-------~~~k~~~El~k~-~kkle~e~~eLk~~L~e~E~~lq~~ 420 (578)
...+-.++..+...+.+++.|...-..++..|.++ ..|+.-||..+. +.+-..-++-|.+.+.+++-++...
T Consensus 364 l~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~f 443 (1265)
T KOG0976|consen 364 LMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNF 443 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence 33334455555555666666666555555555442 556666665432 2223334445555555555555443
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.59 E-value=0.097 Score=59.15 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 280 EIDKLKGELDLARNELRQLRSALDA 304 (578)
Q Consensus 280 ei~eL~~el~~le~EieeL~s~LE~ 304 (578)
.+..|...+..++.++..+...+..
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~ 324 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDE 324 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555444443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.58 E-value=0.45 Score=59.60 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHhHHH
Q 008082 399 LEAEVVEFKASILDKET 415 (578)
Q Consensus 399 le~e~~eLk~~L~e~E~ 415 (578)
+-..+.-++.+|-+++.
T Consensus 511 ~~~~~~~~~~~~~~l~~ 527 (1486)
T PRK04863 511 LAEQLQQLRMRLSELEQ 527 (1486)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 33444455555555554
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.33 Score=57.72 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQN 166 (578)
Q Consensus 114 ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~e 166 (578)
++....+....-...++....+++=..++|+.....++...+....+...+..
T Consensus 480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555555556666666666666666666666654444
No 47
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.55 E-value=0.27 Score=56.20 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+.+++.....+..+|..- ...+...+..+-..+..+..+.+.....+..|+..|.+|..++....
T Consensus 5 ~l~qlq~Erd~ya~~lk~e---~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEE---SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4444555555554444432 22234445556666666666667777777778888888877776654
No 48
>PRK01156 chromosome segregation protein; Provisional
Probab=97.52 E-value=0.41 Score=57.44 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 40 LQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMS 76 (578)
Q Consensus 40 lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~ 76 (578)
++.+|......+...+.....+..++..++.+++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~ 231 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM 231 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444443433333333333
No 49
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.51 E-value=0.3 Score=55.62 Aligned_cols=135 Identities=17% Similarity=0.260 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~ 360 (578)
+.+|+.-+.....-+..|....+....-|-+++..+... ..........+..++..+...+..+...+.
T Consensus 396 i~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~-----------~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 396 IAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEK-----------ASNRESESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776666655443322 111111111122444455555555555555
Q ss_pred hHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008082 361 DKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIEN 433 (578)
Q Consensus 361 d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~ 433 (578)
.++..+..|..+.+.+-..+.-..-.+++.|..+.++|...++.-.-.-. -.++.+...+.-++.+
T Consensus 465 ~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DT-------r~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 465 QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDT-------RELQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 55555554544444444333222335667899999999888886655544 3444444444444443
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.50 E-value=0.57 Score=58.75 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 30 VSELESQLAQLQEDLKKAKEQ---------------------LNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLE 88 (578)
Q Consensus 30 ~~eLe~ql~~lqeeL~~eke~---------------------~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~ 88 (578)
|..|+.-+....-.|+..+.- ..+...+|+.+.+|+-..+....+...+|+........
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~r 311 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVE 311 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555544411 13456777788888777776666777777666665555
Q ss_pred HhhhhhhHHHHHHHhhHhHh
Q 008082 89 ITTSEDTRVEELRQLSQDRD 108 (578)
Q Consensus 89 ~~e~ek~r~~El~kl~~~~e 108 (578)
....-..-...+.+|..+.+
T Consensus 312 I~diL~ELe~rL~kLEkQaE 331 (1486)
T PRK04863 312 MARELAELNEAESDLEQDYQ 331 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 54444333333444444444
No 51
>PRK01156 chromosome segregation protein; Provisional
Probab=97.50 E-value=0.44 Score=57.21 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 229 TLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 229 ~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+...++.+..++..|...+..++..+..+
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el 442 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDEL 442 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333
No 52
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.45 E-value=8.5e-05 Score=86.51 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 473 SSRRAARVTEQLDAAQAASTEMEAELRK 500 (578)
Q Consensus 473 ~~~~~~~l~eql~~ae~~~~~lEaEL~k 500 (578)
....+..|...+......+..|+.+|.+
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555566666655
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.44 E-value=0.46 Score=56.32 Aligned_cols=213 Identities=16% Similarity=0.251 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHhHHHH
Q 008082 35 SQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSE 114 (578)
Q Consensus 35 ~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~~~~e 114 (578)
++|.++.+.+-..-+.+..+...-.....++.-+++++.+...++....+ .+.-..+...+ .-+.+|-.-
T Consensus 207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-----~e~~~~~l~~L-----k~k~~W~~V 276 (1074)
T KOG0250|consen 207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-----LEDLKENLEQL-----KAKMAWAWV 276 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-----HHHHHHHHH
Confidence 56677776665555666666666666666666677777766666654332 11111111111 111233322
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082 115 LDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQ 194 (578)
Q Consensus 115 le~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~ 194 (578)
.+. .+++......+.-.-+.+..+...++.....-..+.....+.+++++.+..+.+..-.+++.++..+.++......
T Consensus 277 ~~~-~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 277 NEV-ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 221 1122222222222222223333333333333333333333444555555555555445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 195 ALEDVRKSQMQLETANANLEMLRSDGIKATEAY-NTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 195 l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~-~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
+...+...+..+...+..++.+.+.+..+.... .++..++++....+..|..+|.+++..+..+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444 4444444444444444444444444444444
No 54
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.44 E-value=0.34 Score=54.64 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008082 390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEE 469 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~e 469 (578)
+...+.++-++..++.|+.+++.+..-+..+..++..|+.++..--. .-..+..++..++.+
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~k------------------q~~~~eikVn~L~~E 644 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESK------------------QSNVYEIKVNKLQEE 644 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999999999999998872110 011334556666677
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhhhccCCCcchhhcccCCCCCCCCCCC
Q 008082 470 ADKSSRRAARV----TEQLDAAQAASTEMEAELRKLKVQSD-QWRKAAEAATAMLSAGNNGKFVERTGSLDGQYSPMIG 543 (578)
Q Consensus 470 le~~~~~~~~l----~eql~~ae~~~~~lEaEL~klr~q~e-q~RkaaE~~~~~L~~~~~~~~~~~~~s~~~~~~~~~~ 543 (578)
++.......+. ..-++.--..-..|..++.++++-.+ ..+-..|..+.+= -++.+=..-|++|.|.|-.
T Consensus 645 ~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQ-----hKIAeMVALMEKHK~qYDk 718 (786)
T PF05483_consen 645 LENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQ-----HKIAEMVALMEKHKHQYDK 718 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHhHHHHHH
Confidence 77665433333 33333323333445555566664222 2233333333331 1233333456777776543
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.53 Score=56.07 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhH
Q 008082 126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTET------------------LSLVEKLKNELSY 187 (578)
Q Consensus 126 ~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~------------------~~eie~l~~~l~e 187 (578)
-..|...+..+.++..+++.....+....+.-+.+.-.++.+..++..+ ...-+.++..+..
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~ 483 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEK 483 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3344555555555555555555444444444444443333333333321 1233345566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082 188 CKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260 (578)
Q Consensus 188 ~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~ 260 (578)
.++....|...+.+...++.-++.++..|...-......+.++...|..+...+......|..+...|.+|+.
T Consensus 484 ~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 484 LEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6677777777777777777777777776666655556666666666666555555555555555555555543
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.42 Score=54.45 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=22.7
Q ss_pred cccCc----chhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008082 23 EKQRP----SRVSELESQLAQLQEDLKKAKEQLNASDSW 57 (578)
Q Consensus 23 ~~~~~----~~~~eLe~ql~~lqeeL~~eke~~~~~E~~ 57 (578)
|.||. +---||+.+-.-|.++-.++++.+.+.|++
T Consensus 315 EDKrkeNy~kGqaELerRRq~leeqqqreree~eqkEre 353 (1118)
T KOG1029|consen 315 EDKRKENYEKGQAELERRRQALEEQQQREREEVEQKERE 353 (1118)
T ss_pred hhhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55553 444678888888887777777666555443
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.37 E-value=0.32 Score=56.45 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 284 LKGELDLARNELRQLRSALDASETRY 309 (578)
Q Consensus 284 L~~el~~le~EieeL~s~LE~aE~~l 309 (578)
+......++.|+..|+..|...|.++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666555555433
No 58
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.33 Score=53.23 Aligned_cols=33 Identities=3% Similarity=0.107 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082 162 AEMQNLRIELTETLSLVEKLKNELSYCKESESQ 194 (578)
Q Consensus 162 ~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~ 194 (578)
.++..++.++......+..++.++.++...+..
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~ 79 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK 79 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333333
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.33 E-value=0.16 Score=51.10 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELV 248 (578)
Q Consensus 169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei 248 (578)
.+++.....+.++...+.+++.++++++..+.++..++..++..+.... -...|+.|..++...+.+..+|+.+|
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~-----~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK-----DERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455555555555555555555555555555442211 12556666666666666666666666
Q ss_pred HHHHHHHHhh
Q 008082 249 SKLQNDLLNS 258 (578)
Q Consensus 249 ~kL~~el~~~ 258 (578)
..+...+..+
T Consensus 113 ~~l~~~~~~l 122 (239)
T COG1579 113 AELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHH
Confidence 6655544444
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.22 E-value=0.59 Score=52.84 Aligned_cols=40 Identities=35% Similarity=0.468 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082 341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI 380 (578)
Q Consensus 341 l~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei 380 (578)
+......++.+++.+.....+.+.+|..+......+..++
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666666666666666655
No 61
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.21 E-value=0.36 Score=50.11 Aligned_cols=218 Identities=20% Similarity=0.191 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc-ccccccc---
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMG-DVHLSQK--- 274 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~-~~~~~~~--- 274 (578)
+++....|+-+-+-=.+|-.....+...+..+...|......+..|+.+|..-..-+.-.....+..+. ......+
T Consensus 71 LeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~ 150 (306)
T PF04849_consen 71 LEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRN 150 (306)
T ss_pred HHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccc
Confidence 334444554444444566666666667777777777777777777776666544322211111000000 0000000
Q ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHH
Q 008082 275 -----NGENEEIDKLKGELDLARNELRQLRSALD-------ASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLE 342 (578)
Q Consensus 275 -----~e~~eei~eL~~el~~le~EieeL~s~LE-------~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~ 342 (578)
.-..--+.-|.+++..++.|-..|+...- ..|..-+..+.+.--++..+..++. .+...++...
T Consensus 151 ~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia----~LseELa~k~ 226 (306)
T PF04849_consen 151 ESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIA----SLSEELARKT 226 (306)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHH----HHHHHHHHHH
Confidence 00011245566666666665555543222 2222222222222223333333333 3333333344
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 008082 343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTE 422 (578)
Q Consensus 343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~ 422 (578)
.++.....+|..|...+.+...+++.+.-+++.|..-+ ......-..|..++.+|+..+.|..+-|..+..
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L---------~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL---------QASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677788888888888888888888888888777 444444455677788888888777777777777
Q ss_pred HHHHHHH
Q 008082 423 QNGMLKM 429 (578)
Q Consensus 423 E~~~lk~ 429 (578)
+...++.
T Consensus 298 Elk~lR~ 304 (306)
T PF04849_consen 298 ELKTLRK 304 (306)
T ss_pred HHHHhhC
Confidence 6666543
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.21 E-value=8e-05 Score=86.62 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 473 SSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 473 ~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
+...+.-+..|+..-......|+.++.+.+
T Consensus 620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 620 SSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334455567788888888888888886654
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.06 E-value=0.24 Score=49.81 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008082 159 SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETA--NANLEMLRSDGIKATEAYNTLSLELEL 236 (578)
Q Consensus 159 ~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea--~~~le~l~~e~~~l~~~~~~l~~eLe~ 236 (578)
.+.+++..++..+..+.-+++++..+++..+..+..+...+....-.+... .+.+.+|..++..+++...++..+|..
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555566665555555555555555555444222 122345555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008082 237 SKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 237 ~~~e~~~Le~ei~kL~~el~~~ 258 (578)
+..++..|+.++..+...+...
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444444333
No 64
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.05 E-value=0.88 Score=51.74 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=72.8
Q ss_pred HHHhhHHHHHHhHHHHhccccc--------ccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 364 TELQSISEENEGLNLKIKTNES--------NQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENRE 435 (578)
Q Consensus 364 ~eL~~L~ee~~~L~~ei~e~~~--------~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~ 435 (578)
.-+..+...+..|..++.-+.. .-....+.+.++.+......+...+.+.......+......+...+...+
T Consensus 313 ~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 313 EYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3344444566666666654211 11123333344444444444444443333333444444444444444333
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 436 MERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARV---------TEQLDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 436 ~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l---------~eql~~ae~~~~~lEaEL~klr~ 503 (578)
.+ -.++...+...+..+..+..++..+...+-...+.+... ...+..+......+...|.+.+.
T Consensus 393 ~~----q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pi 465 (560)
T PF06160_consen 393 EE----QEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPI 465 (560)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 22 334555666777777777777777777777777666444 55666666677777777765553
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.03 E-value=0.68 Score=50.08 Aligned_cols=6 Identities=33% Similarity=1.065 Sum_probs=2.2
Q ss_pred hhHHHh
Q 008082 564 NMLKKF 569 (578)
Q Consensus 564 ~~~~~~ 569 (578)
+.++.|
T Consensus 306 ~il~rF 311 (420)
T COG4942 306 RILRRF 311 (420)
T ss_pred cHHHHh
Confidence 333333
No 66
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.99 E-value=0.43 Score=47.09 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALD 303 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE 303 (578)
...+..+..+.+.....+.+++.-.+.|...+...+.. +..+..--..++..+.+...+|.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v-------------------i~~~k~NEE~Lkk~~~ey~~~l~ 128 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV-------------------IEGYKKNEETLKKCIEEYEERLK 128 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------------------HHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554444322 22233333455666777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 008082 304 ASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETE 365 (578)
Q Consensus 304 ~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~e 365 (578)
..+.+|+....-....+..+.+.+.+++........-+.+.+.+..-.+..|...+..+..+
T Consensus 129 ~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 129 KEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666677777777887777666666655555555555555555555444433
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.93 E-value=1.2 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 480 VTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 480 l~eql~~ae~~~~~lEaEL~klr 502 (578)
++-|++.++.....=+.||..|+
T Consensus 627 akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 627 AKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=1.4 Score=51.82 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhccc--ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082 341 LETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTN--ESNQRDSKLAVELNKLEAEVVEFKASILDKETELM 418 (578)
Q Consensus 341 l~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~--~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq 418 (578)
+...+..+..++++++..+.+...-++.-......+...+.+. .-++...++.+.++.....+.+-...++..+...+
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788888888888777777766667777777777765 33556678888888877777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 008082 419 SLTEQNGMLKMEIENREMERNKV 441 (578)
Q Consensus 419 ~~~~E~~~lk~~i~~~~~e~~~~ 441 (578)
.+.-|.+.+...+......|++.
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~ 841 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQL 841 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666555555433
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=1.1 Score=49.93 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL 256 (578)
Q Consensus 201 el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~ 256 (578)
.++..+...+.-+..+...-..+...++.+..+++....++..|+..+..|+..|.
T Consensus 270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555555555555555555555555443
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.85 E-value=1.3 Score=50.49 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCC
Q 008082 486 AAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGN 523 (578)
Q Consensus 486 ~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~L~~~~ 523 (578)
+.++....+...+..|..+++....++...-.++.-||
T Consensus 473 ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~n 510 (569)
T PRK04778 473 AVNRLLEEATEDVETLEEETEELVENATLTEQLIQYAN 510 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444455555555555555555444
No 71
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.80 E-value=1.5 Score=55.06 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=38.3
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008082 25 QRPSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEA 68 (578)
Q Consensus 25 ~~~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~ 68 (578)
-|..+|.+|+.+|..+...+......+..+...+..+..+...+
T Consensus 739 ~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 739 ARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999988876554
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.78 E-value=0.44 Score=44.29 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 156 HAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANAN 212 (578)
Q Consensus 156 ~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~ 212 (578)
.+..++..+..+.........+|..|..++..++..+..+...+..+...++.....
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444555555666666666666666666666666666666666665555555555443
No 73
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.74 E-value=2.2 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh
Q 008082 388 RDSKLAVELNKLEAEVVEFKASI 410 (578)
Q Consensus 388 ~~~El~k~~kkle~e~~eLk~~L 410 (578)
....+.+..+.+..++..|+.+|
T Consensus 743 ~~~~l~r~~~~~~~~vl~Lq~~L 765 (1317)
T KOG0612|consen 743 KLNELRRSKDQLITEVLKLQSML 765 (1317)
T ss_pred chhhhhhhHHHHHHHHHHHHHHH
Confidence 44566666666666676666666
No 74
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.73 E-value=0.87 Score=46.82 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=112.5
Q ss_pred HhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcc------------cccccchHHHHHHHH
Q 008082 330 AKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKT------------NESNQRDSKLAVELN 397 (578)
Q Consensus 330 ~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e------------~~~~k~~~El~k~~k 397 (578)
....+...+..+.++...+.+.++.-+..-...|+++.+... .|.+.|.+ +...+...|+....-
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rs---RLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqd 133 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRS---RLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQD 133 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence 334444444445555555555555444444444444444321 11111111 133455667777777
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHH
Q 008082 398 KLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLA---EAARVAEREALMKVGFLTEEADKSS 474 (578)
Q Consensus 398 kle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~l---e~a~~~~~~~~~kl~~l~~ele~~~ 474 (578)
+|..++..|+-.. +.+..+++.+...++.++.+++...+.++..- |.+.+--..++-+++.++.......
T Consensus 134 kmn~d~S~lkd~n-------e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~ 206 (305)
T PF14915_consen 134 KMNSDVSNLKDNN-------EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQ 206 (305)
T ss_pred HhcchHHhHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7777777777766 66777777777777777777777776666543 6666666677778888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082 475 RRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA 515 (578)
Q Consensus 475 ~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~ 515 (578)
..+......-+..+.+..-++.+---|+.|.+.+.+.+...
T Consensus 207 ~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~k 247 (305)
T PF14915_consen 207 DKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNK 247 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777787778888777777888887777653
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.73 E-value=0.35 Score=44.96 Aligned_cols=58 Identities=22% Similarity=0.436 Sum_probs=42.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082 458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA 515 (578)
Q Consensus 458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~ 515 (578)
.+..++..|+.+|+.+...+..+.+.|..+......++.....|-.+.+.|=+..+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555667778888888777778888888888888888888777777777776555543
No 76
>PF13514 AAA_27: AAA domain
Probab=96.70 E-value=2.6 Score=51.93 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhccCC
Q 008082 467 TEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQ-SDQWRKAAEAATAMLSAGN 523 (578)
Q Consensus 467 ~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q-~eq~RkaaE~~~~~L~~~~ 523 (578)
..+.......+.++..+.....-+...|..-+.+++.. ....-..+......|.+|.
T Consensus 939 ~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~ 996 (1111)
T PF13514_consen 939 EQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGR 996 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence 34444444555555555555566666666666666531 1222334556666666543
No 77
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.68 E-value=0.97 Score=46.63 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082 343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI 380 (578)
Q Consensus 343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei 380 (578)
..+..+.++++.++....+.-.++..|..+......++
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m 195 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444444444444444444333
No 78
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.65 E-value=0.75 Score=45.00 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008082 159 SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSK 238 (578)
Q Consensus 159 ~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~ 238 (578)
.+..++.++..++.++..+.--|+.-.---+.++..+...-.++-.-+..-..++..|...+...+..+..+...+-...
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666655555555444333344444444434444444455555555555555555555555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008082 239 ARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTL 318 (578)
Q Consensus 239 ~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~ 318 (578)
.++..+...+..|..-.. .++. .+..+|...+..+...+..-...+...+..+.-.....
T Consensus 96 ~el~k~~~~l~~L~~L~~---dknL---------------~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~-- 155 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSE---DKNL---------------AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF-- 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--
Confidence 444444444444332211 1111 12344444444444444333333333332222111111
Q ss_pred HHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 008082 319 QIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETE 365 (578)
Q Consensus 319 el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~e 365 (578)
.+.-.--..+..+++.++..+..++..+...+.+++.+
T Consensus 156 ---------~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 156 ---------RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11111123344556677777777777777777766543
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.60 E-value=1.9 Score=49.09 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHh
Q 008082 29 RVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRD 108 (578)
Q Consensus 29 ~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e 108 (578)
.+...+..|..+.+.+.+-+.. ++-..-.+ +...++.....+...........+.+++--.++..++..-.
T Consensus 80 ~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~-------~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~ 150 (569)
T PRK04778 80 SLPDIEEQLFEAEELNDKFRFR--KAKHEINE-------IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYR 150 (569)
T ss_pred hhhhHHHHHHHHHHHHhcccHH--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666555544432 22222222 33334444444444444444444555444444433332221
Q ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 109 KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAES--EAAQTKHAESAYAEMQNLRIELT 172 (578)
Q Consensus 109 ~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~a--k~~~~k~~~~le~el~eL~~el~ 172 (578)
.+...+-+-+-.|......|...+.++...-.+|+....+ +..|-.....+..++..|...+.
T Consensus 151 -~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~ 215 (569)
T PRK04778 151 -ELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIME 215 (569)
T ss_pred -HHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333333447777788888888888888888744332 34444444445544444444443
No 80
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=1.4 Score=50.72 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 166 NLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLE 245 (578)
Q Consensus 166 eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le 245 (578)
++..++.+.-..+.++..++...+..++-+...+....--++.+...--.+..+...++..+..+...+......+..+.
T Consensus 796 El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~lt 875 (970)
T KOG0946|consen 796 ELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELT 875 (970)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHh
Confidence 33333333333333444444444444444444444333444444433334444445555555555555555555555555
Q ss_pred HHHHHHHHH
Q 008082 246 ELVSKLQND 254 (578)
Q Consensus 246 ~ei~kL~~e 254 (578)
+.++.|..+
T Consensus 876 Ek~~sl~~q 884 (970)
T KOG0946|consen 876 EKISSLEAQ 884 (970)
T ss_pred hhhhhHHHh
Confidence 555555543
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.49 E-value=2.9 Score=49.91 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 008082 155 KHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE 197 (578)
Q Consensus 155 k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~ 197 (578)
..+..|.++....+...+.+...++.+..-++.++.+--.++.
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ 1584 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQD 1584 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544444444444444444444444444444333333
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=2.4 Score=48.71 Aligned_cols=6 Identities=33% Similarity=0.407 Sum_probs=3.1
Q ss_pred ccccCc
Q 008082 22 LEKQRP 27 (578)
Q Consensus 22 ~~~~~~ 27 (578)
|++|=|
T Consensus 304 p~kklP 309 (1118)
T KOG1029|consen 304 PPKKLP 309 (1118)
T ss_pred ccccCC
Confidence 345556
No 83
>PRK09039 hypothetical protein; Validated
Probab=96.46 E-value=0.62 Score=49.65 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETR 308 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~ 308 (578)
+..|..++..++..+..|.+.|..++.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666655544
No 84
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.30 E-value=0.001 Score=77.51 Aligned_cols=12 Identities=50% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhc
Q 008082 509 RKAAEAATAMLS 520 (578)
Q Consensus 509 RkaaE~~~~~L~ 520 (578)
|.+.+..++.++
T Consensus 672 ~~~~~~r~~~~~ 683 (713)
T PF05622_consen 672 REAMESRLAALS 683 (713)
T ss_dssp ------------
T ss_pred HHHHHhhcccCC
Confidence 556665555553
No 85
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.11 E-value=4.6 Score=48.31 Aligned_cols=130 Identities=11% Similarity=0.155 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNEL-SYCKESESQALEDVRKSQMQLE 207 (578)
Q Consensus 129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l-~e~e~~~s~l~~~~~el~~qLE 207 (578)
.+.+-.++..++..+...........-........+..++..++.....|.++..+. ........+...+++.+..+++
T Consensus 332 ~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 332 VDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE 411 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444677777777766666666655555666666777777777777777776666 5666666666666666666666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 208 TANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 208 ea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.++..+..|..+...+..++.....++...+..+..|...|+-....|..+
T Consensus 412 k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 412 KLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666655555555555444333
No 86
>PRK09039 hypothetical protein; Validated
Probab=95.95 E-value=2.6 Score=45.00 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 219 DGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 219 e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
++...+..|.+..-++..++.+|..|+.++..|+..|...
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444433
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=4 Score=45.57 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082 387 QRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIE 432 (578)
Q Consensus 387 k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~ 432 (578)
+...|+.+.-+.+....-.+..++.+++..++.+..+...+...++
T Consensus 489 k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~ 534 (581)
T KOG0995|consen 489 KCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGE 534 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555566666666666666666555554444443
No 88
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.85 E-value=2 Score=42.03 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082 387 QRDSKLAVELNKLEAEVVEFKASILDKETEL 417 (578)
Q Consensus 387 k~~~El~k~~kkle~e~~eLk~~L~e~E~~l 417 (578)
+..+++...++.+..++..|...|.|++..|
T Consensus 164 kK~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 164 KKHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5567888888888888888888888777643
No 89
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.82 E-value=5.3 Score=46.64 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELT-------ETLSLVEKLKNELSYCKESESQALEDVRK 201 (578)
Q Consensus 129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~-------e~~~eie~l~~~l~e~e~~~s~l~~~~~e 201 (578)
|.....++...|.+++.+.-.-....+++-..+.+.+.++..+. +++.-..++..+++..+..+....+....
T Consensus 391 Lr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~ 470 (980)
T KOG0980|consen 391 LRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTN 470 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444455555555555553333344433344444444444333 33444444555555555555544444444
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 202 SQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 202 l~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
+.-+|+++.+.... +...+++....++.++.++..|..++..|+..+
T Consensus 471 L~d~le~~~~~~~~-------~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 471 LNDQLEELQRAAGR-------AETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444443 333344444444444444444444444444443
No 90
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=5.1 Score=44.48 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082 390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNK 440 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~ 440 (578)
.-|..+++.++.+...|-+.|-|..+.+....-.+.....++..+...+++
T Consensus 321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~a 371 (772)
T KOG0999|consen 321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQA 371 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence 345555666777888888888888888777755555555555554444443
No 91
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=7.2 Score=46.12 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 29 RVSELESQLAQLQEDLKKAK---EQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE 81 (578)
Q Consensus 29 ~~~eLe~ql~~lqeeL~~ek---e~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~ 81 (578)
+|.+|-.-|.+=-.+|+.+| ..-++.++.|+-+.==+ --+++.+...+|+.
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYti--YdrEl~E~~~~l~~ 241 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTI--YDRELNEINGELER 241 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhh--hhhHHHHHHHHHHH
Confidence 44454444444444555555 33445556666554222 22444444444444
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.42 E-value=6.6 Score=44.96 Aligned_cols=138 Identities=17% Similarity=0.286 Sum_probs=72.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhh
Q 008082 28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEE-------------SQQQLLEITTSED 94 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~-------------~~~~~~~~~e~ek 94 (578)
..+.+|+.+|..+..++......+........++..+++..+....++...+.- --.++....+...
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 445555566666665555555555555555555555555554444444333221 1122333334444
Q ss_pred hHHHHHHHhhHhHh---HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 95 TRVEELRQLSQDRD---KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLR 168 (578)
Q Consensus 95 ~r~~El~kl~~~~e---~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~ 168 (578)
.+..+|. .+-+ ..+-.++..++..+..-..+....+++|+.++.++..+..--..-......|..++..+.
T Consensus 408 ~rl~~L~---~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 408 QRLVELA---QQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHH---HHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444432 2222 335567777777766666666777788888888877544433333333334444444443
No 93
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.34 E-value=2.9 Score=40.47 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082 327 LERAKSESSQREADLETELKNVKAQIEELRANLLDKETEL 366 (578)
Q Consensus 327 l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL 366 (578)
.+.+-++..+++.++..-+..+..-..+++......|.-|
T Consensus 149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666565555555555555555555444433
No 94
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.24 E-value=4.8 Score=42.30 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=45.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHH
Q 008082 212 NLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLA 291 (578)
Q Consensus 212 ~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~l 291 (578)
.+......+....+.+.....-+...+.++..+...+.+|..+...|+.+++. .+.-+..+..+....
T Consensus 217 QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~------------~n~~l~~m~eer~~~ 284 (309)
T PF09728_consen 217 QLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEK------------SNKALIEMAEERQKL 284 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHH
Confidence 33333333344444444444445556666777777777788888888877742 112255555555555
Q ss_pred HHHHHHHHHHHHHH
Q 008082 292 RNELRQLRSALDAS 305 (578)
Q Consensus 292 e~EieeL~s~LE~a 305 (578)
..++..+...+...
T Consensus 285 ~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 285 EKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444433
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.20 E-value=4.7 Score=41.99 Aligned_cols=77 Identities=26% Similarity=0.254 Sum_probs=42.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhH--HHHHHHHHHHHH
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEE--IDKLKGELDLAR 292 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~ee--i~eL~~el~~le 292 (578)
.+...+..+...+..+..+++..+...+.|..++..|...-..+..+.+ ..++ .+-|-+.+..++
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE-------------qEEE~isN~LlKkl~~l~ 90 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE-------------QEEEFISNTLLKKLQQLK 90 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3444445555555555666666666666666666666655444433321 1222 556666666666
Q ss_pred HHHHHHHHHHHH
Q 008082 293 NELRQLRSALDA 304 (578)
Q Consensus 293 ~EieeL~s~LE~ 304 (578)
.+.+.|--.++.
T Consensus 91 keKe~L~~~~e~ 102 (310)
T PF09755_consen 91 KEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 96
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.01 E-value=12 Score=45.51 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=22.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA 239 (578)
Q Consensus 181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~ 239 (578)
+...+..++.....+......+...++...+.-....-.+..++..+.++...+.....
T Consensus 586 ~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~ 644 (1317)
T KOG0612|consen 586 LEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKK 644 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 33334444444344333333333333333333333333333333344444333333333
No 97
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.87 E-value=9.6 Score=43.85 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 390 SKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENRE 435 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~ 435 (578)
-+|.+.+-.++..+..++..+..+...++.+..+...+-..+..+.
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666677788888888887777777777666666555555443
No 98
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.74 E-value=4.4 Score=39.32 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
..+|..++..+.-++.....|+..+..+..+|.++......-..-. ..+.... ..+++.+..+..+
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~-------Kv~enr~-------~kdEE~~e~~e~q 68 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM-------KVIENRA-------QKLEEKMEAQEAQ 68 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH-------HHHHHHH-------HhhHHHHHHHHHH
Confidence 3466677777777777777777777777777777766654322222 2222222 2233333333333
Q ss_pred HHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 255 LLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEY 313 (578)
Q Consensus 255 l~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~ 313 (578)
+.+.+-- . + ++...+.++.+.+.-++..++....+.+.+++.+.+..
T Consensus 69 LkEAk~i--a--------E--~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLe 115 (205)
T KOG1003|consen 69 LKEAKHI--A--------E--KADRKYEEVARKLVIIEGELERAEERAEAAESQSEELE 115 (205)
T ss_pred HHHHHHH--H--------H--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333110 0 0 12234667777888888888888888888777765433
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.66 E-value=5.6 Score=42.03 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYN 228 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~ 228 (578)
++..++..+.+....+......+.+++.++......++.+......+...+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444333333333333333
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.65 E-value=8.1 Score=42.00 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=10.1
Q ss_pred CcchhhcccCCCCCCCC
Q 008082 524 NGKFVERTGSLDGQYSP 540 (578)
Q Consensus 524 ~~~~~~~~~s~~~~~~~ 540 (578)
+|.++-|.|+-+.+-+.
T Consensus 304 ~G~il~rFG~~~~gg~~ 320 (420)
T COG4942 304 TGRILRRFGQADGGGLR 320 (420)
T ss_pred CCcHHHHhcccCCCCcc
Confidence 66666666665554433
No 101
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.64 E-value=12 Score=44.00 Aligned_cols=145 Identities=26% Similarity=0.290 Sum_probs=83.0
Q ss_pred HHHHHHhhhhhHhHHhHH-HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHH
Q 008082 325 EQLERAKSESSQREADLE-TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEV 403 (578)
Q Consensus 325 e~l~~~k~E~~qr~~el~-~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~ 403 (578)
.++..++-|.++++.+.- ..........-+|...+.+....|..+.-+|..|..-+ ..-.+.+.+|...+-..+.++
T Consensus 59 ~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l--~~~~~~i~~l~~~~~~~e~~~ 136 (769)
T PF05911_consen 59 RQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKAL--QEKEKLIAELSEEKSQAEAEI 136 (769)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHHHhHH
Confidence 445566777778777632 22222223333455666666667666666666665544 112244566666666677777
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008082 404 VEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQ 483 (578)
Q Consensus 404 ~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eq 483 (578)
..|.+.| +.+.+++..|+-++--+..++.-+. .+.+=..+.++-...|
T Consensus 137 ~~l~~~l-------~~~eken~~Lkye~~~~~keleir~-------------------------~E~~~~~~~ae~a~kq 184 (769)
T PF05911_consen 137 EDLMARL-------ESTEKENSSLKYELHVLSKELEIRN-------------------------EEREYSRRAAEAASKQ 184 (769)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhHHHHHHHHHH
Confidence 7777766 8888888888887774433322211 1111122223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008082 484 LDAAQAASTEMEAELRKLKV 503 (578)
Q Consensus 484 l~~ae~~~~~lEaEL~klr~ 503 (578)
--..-.....||+|=+|||.
T Consensus 185 hle~vkkiakLEaEC~rLr~ 204 (769)
T PF05911_consen 185 HLESVKKIAKLEAECQRLRA 204 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445567789999999884
No 102
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.64 E-value=13 Score=44.19 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 282 DKLKGELDLARNELRQLRSALDASETRYQ 310 (578)
Q Consensus 282 ~eL~~el~~le~EieeL~s~LE~aE~~lq 310 (578)
-++.+.+.....++.+|+..|..+...+.
T Consensus 667 Le~~k~~~~~~~~~~~l~~~L~~~r~~i~ 695 (1200)
T KOG0964|consen 667 LELLKNVNESRSELKELQESLDEVRNEIE 695 (1200)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666655555554443
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.49 E-value=4 Score=37.80 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 200 RKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 200 ~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
..+..+.+.+++.+..|..++..+...++.+..+|+.+..+...|...+.+.+..+
T Consensus 41 e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 41 ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444443333333
No 104
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.49 E-value=2.9 Score=44.87 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=86.8
Q ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008082 109 KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYC 188 (578)
Q Consensus 109 ~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~ 188 (578)
..|..-++.|+.-+..-...+.+....|.++..++..+.+.=...++ .++.++..+..+.......+..++.++..+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk---~iN~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK---YINNQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888888888999998888877776666666 577788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 189 KESESQALEDVRKSQMQLETANANLEMLRSD 219 (578)
Q Consensus 189 e~~~s~l~~~~~el~~qLEea~~~le~l~~e 219 (578)
-..++.....+..+..+|+..+..++...+.
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888888764443
No 105
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=6.9 Score=40.00 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 288 LDLARNELRQLRSALDASETRYQ 310 (578)
Q Consensus 288 l~~le~EieeL~s~LE~aE~~lq 310 (578)
+..++.++..++..|..++.+|.
T Consensus 75 i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 75 IDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344433
No 106
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.18 E-value=5.9 Score=38.46 Aligned_cols=74 Identities=22% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 008082 133 MNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQL 206 (578)
Q Consensus 133 ~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qL 206 (578)
-+|+..+|.-+-.+-.....-..+++.++.+-+.|-.++..+..+...+.....-+....-.+......++.++
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 44666666665555555555555555555555555544444444333333333333333333333333333333
No 107
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.92 E-value=11 Score=40.64 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANL 213 (578)
Q Consensus 175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l 213 (578)
...+..+..++..+...+..++..+..+..++..++..+
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333
No 108
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.88 E-value=12 Score=40.94 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHH
Q 008082 205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKL 284 (578)
Q Consensus 205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL 284 (578)
..-........+...-.++-..+..+..+++....++..|+..+..|..++..-+--. .+..+-+.+..+|
T Consensus 310 D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~---------e~fe~mn~Ere~L 380 (622)
T COG5185 310 DSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST---------EQFELMNQEREKL 380 (622)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCH---------HHHHHHHHHHHHH
Confidence 3333333333444444444555555556666666666666666666666554432111 0111334567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 285 KGELDLARNELRQLRSALDASETRYQ 310 (578)
Q Consensus 285 ~~el~~le~EieeL~s~LE~aE~~lq 310 (578)
.++++.+..+++.|...+-..+-..|
T Consensus 381 ~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 381 TRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 77777777777777655554443333
No 109
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.88 E-value=9.9 Score=39.98 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=58.0
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 335 SQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKE 414 (578)
Q Consensus 335 ~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E 414 (578)
.....++...+.-+..-+++++..+ ....+++ .+...++ ..+.+.+++|+.+...++...+...
T Consensus 208 ~~~E~~Lr~QL~~Y~~Kf~efq~tL-~kSNe~F------~tfk~Em---------ekm~Kk~kklEKE~~~~k~k~e~~n 271 (309)
T PF09728_consen 208 KETEKELREQLNLYSEKFEEFQDTL-NKSNEVF------ETFKKEM---------EKMSKKIKKLEKENQTWKSKWEKSN 271 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH------HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445566666666666777666 5566666 6777777 7888888999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008082 415 TELMSLTEQNGMLKMEIE 432 (578)
Q Consensus 415 ~~lq~~~~E~~~lk~~i~ 432 (578)
..|-.+..+......++.
T Consensus 272 ~~l~~m~eer~~~~~~~~ 289 (309)
T PF09728_consen 272 KALIEMAEERQKLEKELE 289 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666666655555
No 110
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.87 E-value=16 Score=42.51 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
.-+.++..|+.+|..+...+.+....|..|+-....+.-+|..|=
T Consensus 416 e~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 416 EDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888888888888775
No 111
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=13 Score=41.30 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
+...+|+..+....++.+.++.++....+...++-+.+.....|.+-+.+....+.++..-|+.-+.++..++..+.+..
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008082 253 NDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKS 332 (578)
Q Consensus 253 ~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~ 332 (578)
.-..+.+-.- +-.+.|..|+++....+.+.....+-... . ++ ..-++++.|.
T Consensus 408 ~~~ddar~~p-------------e~~d~i~~le~e~~~y~de~~kaqaevdr--------l--Le-----ilkeveneKn 459 (654)
T KOG4809|consen 408 NIEDDARMNP-------------EFADQIKQLEKEASYYRDECGKAQAEVDR--------L--LE-----ILKEVENEKN 459 (654)
T ss_pred HhhHhhhcCh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HH-----HHHHHHhhhc
Confidence 7666554211 11233555555555555544444322221 0 11 1122566777
Q ss_pred hhhHhHHhHH
Q 008082 333 ESSQREADLE 342 (578)
Q Consensus 333 E~~qr~~el~ 342 (578)
+...+++++.
T Consensus 460 Dkdkkiaele 469 (654)
T KOG4809|consen 460 DKDKKIAELE 469 (654)
T ss_pred cccchhhhcC
Confidence 7777777665
No 112
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.69 E-value=9.2 Score=40.25 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL 256 (578)
Q Consensus 205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~ 256 (578)
.|..++..+.....++......+..+..++..+...+......+..+..+|.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333
No 113
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.69 E-value=11 Score=40.09 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE 190 (578)
Q Consensus 111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~ 190 (578)
.+.++..+++.+......|.-...+-+++++.+-.+..-+. .++++.+.|...-..+...++.|+.++-++..
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~-------ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~ 193 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR-------QLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666777776665544332 34444444444444444445555555555554
Q ss_pred HHHHHHHHHHHH
Q 008082 191 SESQALEDVRKS 202 (578)
Q Consensus 191 ~~s~l~~~~~el 202 (578)
...++...-..+
T Consensus 194 r~~~ieQ~~~~l 205 (499)
T COG4372 194 RSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHH
Confidence 444433333333
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.30 E-value=18 Score=41.21 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 008082 72 LSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAES-- 149 (578)
Q Consensus 72 ~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~a-- 149 (578)
++.+...+....+......+.+.+--.++..++..- ..+...+-.-+-.|...+..|...+..+...=.+|+....+
T Consensus 110 l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y-~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD 188 (560)
T PF06160_consen 110 LDEIEEDIKEILDELDELLESEEKNREEIEELKEKY-RELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGD 188 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 333333333333433444444443333333222221 22334444444457777777777777777777777755443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 150 EAAQTKHAESAYAEMQNLRIELT 172 (578)
Q Consensus 150 k~~~~k~~~~le~el~eL~~el~ 172 (578)
...|......+...+..|...+.
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e 211 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIME 211 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444
No 115
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=25 Score=42.28 Aligned_cols=128 Identities=6% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE 190 (578)
Q Consensus 111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~ 190 (578)
+..+.+.++.+...............+.+.+..-.....+..+++... +-.+...++ ..-.+-.+-.+...+..+..
T Consensus 158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~-lkde~~~~q--~e~~L~qLfhvE~~i~k~~~ 234 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQR-LKDEKGKAQ--KEQFLWELFHVEACIEKAND 234 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHH--HHHHHHHHhhhhhhHhhhhH
Confidence 666777777777666665555555555555555444444455544211 111111111 11234466677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008082 191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARV 241 (578)
Q Consensus 191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~ 241 (578)
.++.++..+..+...++.....+.....+..++...+..+...+......+
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l 285 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKL 285 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877777766666666555555554444444433
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.04 E-value=14 Score=39.11 Aligned_cols=49 Identities=16% Similarity=0.036 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 172 TETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDG 220 (578)
Q Consensus 172 ~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~ 220 (578)
..+...++.|+.....+......+...+..+......+..++..++...
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555444443
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.02 E-value=22 Score=41.32 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 33 LESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQ 84 (578)
Q Consensus 33 Le~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~ 84 (578)
+..++..++.++................+..+++.+...++++...+...++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444444444444444444444444444444555555554444
No 118
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.62 E-value=23 Score=40.57 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=18.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE 214 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le 214 (578)
-|-.|+.+..+.+.-+.+.-..|..++..+..++.-+.
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 44445555555554444444455555544444444443
No 119
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.43 E-value=9.2 Score=35.57 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKL 262 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~ 262 (578)
.....+...+......++...+++.++...+...+..+
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444445555555555555554443
No 120
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.40 E-value=23 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 401 AEVVEFKASILDKETELMSLTEQNGMLKMEIENR 434 (578)
Q Consensus 401 ~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~ 434 (578)
.-+..|-..|..+.+.|+.+.-+...|.-+++++
T Consensus 392 ~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl 425 (511)
T PF09787_consen 392 SRLTQLTESLIQKQTQLESLGSEKNALRLQLERL 425 (511)
T ss_pred HHHhhccHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence 5556666677777777788877777777777633
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.33 E-value=27 Score=40.77 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082 205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260 (578)
Q Consensus 205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~ 260 (578)
++..++..+.....+...|...+......|+.....+....+.|..|...+..+..
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555655666666666666666666766666666666666666666555543
No 122
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.11 E-value=27 Score=40.22 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 450 EAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 450 e~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
+....-...+......++..+.........+..||.++...-.....+...+|
T Consensus 510 EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR 562 (739)
T PF07111_consen 510 EQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELR 562 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444555566677777777777777777777777776665555554454
No 123
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.64 E-value=10 Score=34.53 Aligned_cols=23 Identities=22% Similarity=0.318 Sum_probs=12.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 008082 122 QSMDSAALGSAMNEIQRLKFQLE 144 (578)
Q Consensus 122 ~~~~~~~L~~~~~el~klr~qle 144 (578)
|+.++..|.....++..++.++.
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEIN 76 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443
No 124
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.48 E-value=16 Score=37.16 Aligned_cols=52 Identities=31% Similarity=0.423 Sum_probs=27.3
Q ss_pred HHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHH
Q 008082 328 ERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLK 379 (578)
Q Consensus 328 ~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~e 379 (578)
++.+.++..++..++.+......++..........+.+++.+..+...|...
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555555555655555555555555555554444444444443
No 125
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.31 E-value=16 Score=36.09 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008082 290 LARNELRQLRSALDASETRY 309 (578)
Q Consensus 290 ~le~EieeL~s~LE~aE~~l 309 (578)
.++..-+.|+..+.+...++
T Consensus 108 ~~k~NEE~Lkk~~~ey~~~l 127 (207)
T PF05010_consen 108 GYKKNEETLKKCIEEYEERL 127 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33333333334444333333
No 126
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.02 E-value=22 Score=38.24 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHH
Q 008082 205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKL 284 (578)
Q Consensus 205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL 284 (578)
+++.+-.........+..++..|.....-+.....++..+.+++..++.++.+-+... .+. .-+..+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m------------tD~-sPlv~I 333 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM------------TDG-SPLVKI 333 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CCC-CHHHHH
Confidence 3344444444444444444455555544444444445555555555555555543221 111 337778
Q ss_pred HHHHHHHHHHHHHHH
Q 008082 285 KGELDLARNELRQLR 299 (578)
Q Consensus 285 ~~el~~le~EieeL~ 299 (578)
+..+..++.||..+.
T Consensus 334 KqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 334 KQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888887774
No 127
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.97 E-value=8.7 Score=38.62 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHH
Q 008082 211 ANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDL 290 (578)
Q Consensus 211 ~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~ 290 (578)
.-|..+.++...|..++....++|-.+..++..|+..|..+..+...... .+..+..++..
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~-------------------~i~r~~eey~~ 92 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE-------------------KIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH
Confidence 33445555555555666666666666666666666666666665544422 25555556666
Q ss_pred HHHHHHHHHHH
Q 008082 291 ARNELRQLRSA 301 (578)
Q Consensus 291 le~EieeL~s~ 301 (578)
++.+|++++..
T Consensus 93 Lk~~in~~R~e 103 (230)
T PF10146_consen 93 LKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.82 E-value=13 Score=33.98 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 233 ELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 233 eLe~~~~e~~~Le~ei~kL~~el 255 (578)
++..+...+..|..+-.=|..+|
T Consensus 106 e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 106 ELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 129
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.76 E-value=39 Score=39.48 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHH
Q 008082 80 EESQQQLLEITTSEDTRVEELRQ 102 (578)
Q Consensus 80 e~~~~~~~~~~e~ek~r~~El~k 102 (578)
+.++-.-.-+.+..+++..+...
T Consensus 66 dkaglneSviie~sk~vstqetr 88 (1265)
T KOG0976|consen 66 DKAGLNESVIIEQSKKVSTQETR 88 (1265)
T ss_pred HHhhccchhhhhhcchhhHHHHH
Confidence 33444445556666777666543
No 130
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.70 E-value=21 Score=36.42 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------
Q 008082 159 SAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDG------------------ 220 (578)
Q Consensus 159 ~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~------------------ 220 (578)
.++-...-+..++.-....|.-+-.+++.++..+..+...+..+..+|+.++.....-...+
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q 157 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQ 157 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhh
Confidence 34444444555566666778888888999999999999999999999998888776333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 221 IKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 221 ~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
...-..|++|.+.+..--.+.+.|+.+|..|+.
T Consensus 158 ~~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 158 YYSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 223466777777777766777888888888874
No 131
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=39 Score=39.28 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=30.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008082 457 REALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEA 514 (578)
Q Consensus 457 ~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~ 514 (578)
.++...+.+++..++.......++..++.........+---..++..+.+..++.++.
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665555555555554444444444444444444444443
No 132
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.31 E-value=12 Score=33.70 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhH
Q 008082 28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDR 107 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~ 107 (578)
.-+..|.++|..+.-++...++.+..++.+|..+.+||-.+-...+++ .. ...++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------~~-----------~~~~~------- 70 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------RA-----------LKKEV------- 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----------HHHHH-------
Confidence 346678999999999999999999999999999998886643333322 11 01111
Q ss_pred hHhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 108 DKAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAE 148 (578)
Q Consensus 108 e~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ 148 (578)
..++.++..+..+|.....-|..-.+++..|+.++.++..
T Consensus 71 -~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 71 -EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2245566677777888888888888888888888876544
No 133
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.04 E-value=13 Score=33.60 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=8.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q 008082 215 MLRSDGIKATEAYNTLSLELE 235 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe 235 (578)
.|..++..+...|+.+-.-|-
T Consensus 72 ~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444433333
No 134
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=89.96 E-value=20 Score=34.91 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELT 172 (578)
Q Consensus 114 ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~ 172 (578)
++++++++...--.+|..+-+-+.-+.++|+.+-.+.......++.++.....+..++.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e 63 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKME 63 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444433334455555555556666666555555555555555544444433333
No 135
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=25 Score=35.99 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008082 391 KLAVELNKLEAEVVEFKASI 410 (578)
Q Consensus 391 El~k~~kkle~e~~eLk~~L 410 (578)
.+......+..+...|..+.
T Consensus 201 ~~aa~~a~~~~e~a~l~~qk 220 (265)
T COG3883 201 ALAAKEASALGEKAALEEQK 220 (265)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33333344445555555433
No 136
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.81 E-value=28 Score=36.40 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 159 SAYAEMQNLRIELTETLSLVEKLKNELS 186 (578)
Q Consensus 159 ~le~el~eL~~el~e~~~eie~l~~~l~ 186 (578)
.+..+...+-..+......|..|+..+.
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~ 121 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLRHELS 121 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.78 E-value=17 Score=33.79 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008082 148 ESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAY 227 (578)
Q Consensus 148 ~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~ 227 (578)
..+.....+.+.+...+..+..++..+...++.|+.++..++..++.+......+..++..+...+.....++.++...+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666667777777777777777777777777777777777777777766666666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 228 NTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 228 ~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
......+ ..+++.-+.++.+|+..+
T Consensus 125 ~~~~tq~---~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 125 QQRKTQY---EHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 5544433 233344444555555443
No 138
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.54 E-value=18 Score=36.99 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 176 SLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSK 250 (578)
Q Consensus 176 ~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~k 250 (578)
.-|..|-.++.-+.+..-+-+..++.+.+-|...+...+.-..++..|..+...+.+.++.+......|..++.-
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence 344444444444555555555666666666666666666666667777777666666666655544444444333
No 139
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.40 E-value=44 Score=38.03 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 176 SLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 176 ~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
.+-.++..+++.+++.++.++..+..++.++..+....+. +..-....+.-+..+|+..+..+..|+.++..|..++
T Consensus 189 ~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de---e~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE---EVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777666666666666666655321 1233335566667778888888888888888888877
Q ss_pred HhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 008082 256 LNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESS 335 (578)
Q Consensus 256 ~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~ 335 (578)
......... .....++.+.-.+...+.++..|-..++..++-+.++......+|.
T Consensus 266 ~~~N~~~~~-----------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~-------------- 320 (629)
T KOG0963|consen 266 AKANSSKKL-----------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQIS-------------- 320 (629)
T ss_pred Hhhhhhhhh-----------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 655432210 1223466777777778888888888888878777766655544433
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHH-Hhccc-c-------cccchHHHHHHHHHHHHHHHHH
Q 008082 336 QREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNL-KIKTN-E-------SNQRDSKLAVELNKLEAEVVEF 406 (578)
Q Consensus 336 qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~-ei~e~-~-------~~k~~~El~k~~kkle~e~~eL 406 (578)
.++.++..+..++++++..+... ..+-.|+.+..-|+. +..+. + ++.-..=|....++|+.+++.|
T Consensus 321 ----~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~L 395 (629)
T KOG0963|consen 321 ----ALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASL 395 (629)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHH
Confidence 23344445555555555555322 222233333333322 11110 1 1111223455556677777777
Q ss_pred HHHhHhHHH
Q 008082 407 KASILDKET 415 (578)
Q Consensus 407 k~~L~e~E~ 415 (578)
+........
T Consensus 396 r~~n~~~~~ 404 (629)
T KOG0963|consen 396 RVANSGLSG 404 (629)
T ss_pred hccccccch
Confidence 766644333
No 140
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.28 E-value=47 Score=38.26 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008082 128 ALGSAMNEIQRLKFQLEKVA 147 (578)
Q Consensus 128 ~L~~~~~el~klr~qle~~~ 147 (578)
++...+.++..++.+++...
T Consensus 148 e~~~k~ae~~~lr~k~dss~ 167 (716)
T KOG4593|consen 148 EKEDKLAELGTLRNKLDSSL 167 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555433
No 141
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.10 E-value=28 Score=35.47 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhHhHH
Q 008082 318 LQIRSAYEQLERAKSESSQREA 339 (578)
Q Consensus 318 ~el~~~~e~l~~~k~E~~qr~~ 339 (578)
.++..++..+++++..+.....
T Consensus 153 ~El~~A~~LL~~v~~~~~~~~~ 174 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKPQQ 174 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 5555556666666665443333
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.97 E-value=31 Score=37.70 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=35.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
...+....+++..+..++.++...+..-..|.+...-+...+..+...+ +..+......|..|+.++.++-
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~---~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE---KEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHh
Confidence 3344444455555555555555555444444444444444444333322 2334466666666666665553
No 143
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.70 E-value=53 Score=38.11 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAKKQLSAMSA 77 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~ 77 (578)
.++.+++.++..++.++......+........++...+..+...+.....
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555555555444444444444444444444444444443333
No 144
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=42 Score=36.70 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 114 ELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAA 152 (578)
Q Consensus 114 ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~ 152 (578)
++.+..++|...+.+|.+-..+....-+.++.+...+..
T Consensus 245 el~ae~kqh~v~~~ales~~sq~~e~~selE~llklker 283 (521)
T KOG1937|consen 245 ELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKER 283 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHH
Confidence 444455555555555555555444444444444444433
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.41 E-value=60 Score=38.33 Aligned_cols=114 Identities=12% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIK-ATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~-l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
.+.+++.++..++...+.+...+..-.-++-.++..+..++..+.. +..-..++..+++........|+..+..++..+
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~ 368 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAAS 368 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555554433333333344444433333222 222233445556666666667777777777666
Q ss_pred HhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 256 LNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 256 ~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE 306 (578)
...-.. ..++..|+++.+..+.-.+.+-.+++++.
T Consensus 369 ~~~~~~----------------~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 369 AQAGEQ----------------QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HhCcHh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555322 13477777777777777777766666544
No 146
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.01 E-value=39 Score=35.67 Aligned_cols=178 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAY---------------------AEMQNLRIELTETLSLVEKLKNE 184 (578)
Q Consensus 126 ~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le---------------------~el~eL~~el~e~~~eie~l~~~ 184 (578)
..+|..-..|-..+|.-.+.+..-+..-.+....+. .-+.+.+.....+..+|..|+..
T Consensus 15 ~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqk 94 (319)
T PF09789_consen 15 SQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQK 94 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 185 LSYCKESESQALEDVRKSQ------------MQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 185 l~e~e~~~s~l~~~~~el~------------~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
+.++...+--+...+.... ..-+.+=..++.+......|+..+.++..+.+++..+...+...+.+|+
T Consensus 95 l~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN 174 (319)
T PF09789_consen 95 LNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLN 174 (319)
T ss_pred HHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhh--ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 253 NDLLNSSNKLAE--SMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALD 303 (578)
Q Consensus 253 ~el~~~~~k~~~--~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE 303 (578)
.++..+-+-... -+++.+..+..=..+.+..++.+...+...|...++.|+
T Consensus 175 ~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 175 HELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 147
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.89 E-value=4.6 Score=39.35 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 008082 288 LDLARNELRQL 298 (578)
Q Consensus 288 l~~le~EieeL 298 (578)
+..++.|-..|
T Consensus 167 ~~~l~~En~~L 177 (194)
T PF08614_consen 167 LRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 148
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.85 E-value=29 Score=34.10 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRY 309 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~l 309 (578)
+..|...+..+..++...+...+.--..+
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56666667777777766665555433333
No 149
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=64 Score=37.89 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHH
Q 008082 344 ELKNVKAQIEELRANLLDKETELQSISEENEGLN 377 (578)
Q Consensus 344 el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~ 377 (578)
++...+.+-+++.-.+.+....++.|++-++.|.
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 3334445555555555555555555555555544
No 150
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.23 E-value=35 Score=34.34 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 128 ALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE 190 (578)
Q Consensus 128 ~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~ 190 (578)
+|..-+.++.+++..+=....+-....+....+..+.+.|..+-.....+|-.+...+..++.
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444444444444444444444444333333333333333333
No 151
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.21 E-value=78 Score=38.32 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 200 RKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 200 ~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
..+...+.........+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~ 440 (908)
T COG0419 385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQI 440 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444433
No 152
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.08 E-value=12 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008082 197 EDVRKSQMQLETANANLEM 215 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~ 215 (578)
..+..+...|.+....++.
T Consensus 130 ~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 153
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=87.05 E-value=37 Score=34.39 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082 130 GSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLR-IELT-ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLE 207 (578)
Q Consensus 130 ~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~-~el~-e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLE 207 (578)
..+..+.++.-..|+.+...+..+-..+.-++..+..-. ..++ ..+..+.....++.+++..................
T Consensus 73 ~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~ 152 (239)
T PF05276_consen 73 KEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYN 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446677777788888888888777777777665543 2344 33456677777788888888888877777777777
Q ss_pred HHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 208 TANANLEMLRSDG-------IKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 208 ea~~~le~l~~e~-------~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+...+..|.+.+ ..+-+........|+..+..+..|+..|...+..+...
T Consensus 153 ~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~A 210 (239)
T PF05276_consen 153 EAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEA 210 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666654 22223334445566666777777777777777666544
No 154
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.70 E-value=49 Score=35.51 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082 128 ALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLE 207 (578)
Q Consensus 128 ~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLE 207 (578)
.|++..-+|.-+|.++..+...+......... .+.++..+..+-+.++.++..+......+ +..|.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~-------~~~El~~~r~e~~~v~~~~~~a~~n~~kA-------qQ~la 140 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREA-------ARSELQKARQEREAVRQELAAARQNLAKA-------QQELA 140 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 35555556666666666665555544443333 33333333333333333333333333333 33444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 208 TANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 208 ea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+......+.+++..+-..+..+..++..+...-+.|+.-++.|+.+.-++
T Consensus 141 r~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 141 RLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455455555544454455554455555444444
No 155
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.89 E-value=49 Score=34.67 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH-HHHHHH
Q 008082 125 DSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE-DVRKSQ 203 (578)
Q Consensus 125 ~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~-~~~el~ 203 (578)
-++.|.--+.+|..-+..++.......... +..+...+..|..+.......++.|+...=+++...-+-+. .|+.+.
T Consensus 107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~--V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 107 LTNDLSRKLNQLRQEKVELENQLEQEQEYL--VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777666544332 22344444445444444444555555554455544444332 345555
Q ss_pred HHHHHHHHHHHHHHhhhHH-------HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 204 MQLETANANLEMLRSDGIK-------ATEAYN-TL-SLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 204 ~qLEea~~~le~l~~e~~~-------l~~~~~-~l-~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+++.+...-..|...+.. ..+... .+ ..-.+.....+..|..+|..|..++....
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq 249 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQ 249 (310)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444321 010000 00 01123344455666666666666665543
No 156
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.88 E-value=22 Score=40.24 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008082 245 EELVSKLQ 252 (578)
Q Consensus 245 e~ei~kL~ 252 (578)
+..|..|+
T Consensus 480 ~~~I~~L~ 487 (652)
T COG2433 480 DRRIERLE 487 (652)
T ss_pred HHHHHHHH
Confidence 33333333
No 157
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.53 E-value=66 Score=35.84 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDA 304 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~ 304 (578)
+..|+++.+..+.-...+-.+++.
T Consensus 357 l~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 158
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.97 E-value=42 Score=33.13 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
.+..++..++..++.....+..+..++.........+.....-|.
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555444
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.73 E-value=79 Score=36.06 Aligned_cols=12 Identities=42% Similarity=0.412 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 008082 287 ELDLARNELRQL 298 (578)
Q Consensus 287 el~~le~EieeL 298 (578)
.+..+-..+...
T Consensus 361 ~l~~~a~~Ls~~ 372 (563)
T TIGR00634 361 ELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 160
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.33 E-value=19 Score=28.56 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008082 465 FLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWR 509 (578)
Q Consensus 465 ~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~R 509 (578)
.++.+|.......-.+..+|..++.++..|+.+|..|+-+.+..|
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777777777778889999999999999999999998887765
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.23 E-value=19 Score=35.63 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 227 YNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 227 ~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
+..+..++..++.++..|+.++..++
T Consensus 141 n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 141 NQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333443333333333333
No 162
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.61 E-value=1.1e+02 Score=37.03 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 460 LMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLK 502 (578)
Q Consensus 460 ~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr 502 (578)
..+...++.++.+....+.++..++..+.+-...++..+.++.
T Consensus 848 k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~ 890 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKE 890 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 4455666666666677777777777777777777777777754
No 163
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=83.39 E-value=61 Score=33.72 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 200 RKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL 256 (578)
Q Consensus 200 ~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~ 256 (578)
+-+..+|-.++..+.+|..++....+.+..-+.-|+.+.+++...+..+..+...+.
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~q 203 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQ 203 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666555555555555566666666666666666655443
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.08 E-value=30 Score=36.50 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 222 KATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 222 ~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
..-..++.+..++-....+...+...+.-+..++..++
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 165
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.92 E-value=46 Score=31.97 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 008082 204 MQLETANANLE 214 (578)
Q Consensus 204 ~qLEea~~~le 214 (578)
..+..+...+.
T Consensus 130 ~~l~~l~~~~~ 140 (191)
T PF04156_consen 130 ERLDSLDESIK 140 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 166
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.45 E-value=21 Score=29.58 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008082 167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLE 233 (578)
Q Consensus 167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~e 233 (578)
|..++..+..+|.=|+..+++++.....+...+..+...-+.+..+...+..+...|.+.+.++-..
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555555555555555555555555555555555555555555555555544444433
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.36 E-value=35 Score=35.96 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEE 246 (578)
Q Consensus 167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ 246 (578)
+..++..+..+...+...+..++.....+...+..++.++......-...-.....+.-.+.....+.+.+...+.....
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555555555555555555555555555555666666666666666666
Q ss_pred HHHHHHH
Q 008082 247 LVSKLQN 253 (578)
Q Consensus 247 ei~kL~~ 253 (578)
.+.+|+.
T Consensus 128 ~L~~L~k 134 (314)
T PF04111_consen 128 QLDRLRK 134 (314)
T ss_dssp HHHCHHT
T ss_pred HHHHHHh
Confidence 6666664
No 168
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.18 E-value=60 Score=32.83 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008082 147 AESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKAT 224 (578)
Q Consensus 147 ~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~ 224 (578)
.......-+.......+...+..++..+..+++.+...+..++..++.....+..++.+++.....-..+.--+..+-
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~ 111 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMI 111 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555666666666666666666666666666666666666666666666555555444443333333
No 169
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.77 E-value=24 Score=28.51 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008082 169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLEL 234 (578)
Q Consensus 169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eL 234 (578)
.++..+..+|.=|...+++++.....++..+..++...+.+....+.+..+-..|.+.+.++-..+
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444445555666666666666666666666666666666666666666666666655554443
No 170
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.67 E-value=65 Score=32.84 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 008082 390 SKLAVELNKLEAEVVEFKASILDKETELMSLT 421 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~ 421 (578)
.++...+..+......+...|.+.+.-|..+.
T Consensus 223 ~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~ 254 (264)
T PF06008_consen 223 EDLEKKKQELSEQQNEVSETLKEAEDLLDQAN 254 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666555543
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.29 E-value=1.2e+02 Score=35.75 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 158 ESAYAEMQNLRIELTETLSLVEKLKNE 184 (578)
Q Consensus 158 ~~le~el~eL~~el~e~~~eie~l~~~ 184 (578)
.-+..++..++.++...+..+...+.+
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777776665
No 172
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=80.32 E-value=1.4e+02 Score=35.67 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008082 236 LSKARVKSLEELVSKLQNDLLNSSNKL 262 (578)
Q Consensus 236 ~~~~e~~~Le~ei~kL~~el~~~~~k~ 262 (578)
.....+.+|...|.++..+...|..|+
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455566666666666666665554
No 173
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.16 E-value=1e+02 Score=34.06 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHH
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNE 294 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~E 294 (578)
...+-+..+...+......|.+++.+...|+-++.+++..+..+..+|.+ ++- +.+.--...-++.+-+..-+.+
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~-eiQ----qKnksvsqclEmdk~LskKeee 461 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT-EIQ----QKNKSVSQCLEMDKTLSKKEEE 461 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH-HHH----HhhhHHHHHHHHHHHhhhhHHH
Confidence 33444566677777777888888888888888888888888777766643 110 1111112244555555555666
Q ss_pred HHHH
Q 008082 295 LRQL 298 (578)
Q Consensus 295 ieeL 298 (578)
|+.|
T Consensus 462 verL 465 (527)
T PF15066_consen 462 VERL 465 (527)
T ss_pred HHHH
Confidence 6665
No 174
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.97 E-value=16 Score=36.14 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008082 231 SLELELSKARVKSLEEL 247 (578)
Q Consensus 231 ~~eLe~~~~e~~~Le~e 247 (578)
..+++..+.+++.|+.+
T Consensus 162 e~e~ee~~erlk~le~E 178 (290)
T COG4026 162 EAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 175
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=79.45 E-value=1.7e+02 Score=36.43 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008082 30 VSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAE-EAKKQLSAMSARLEE 81 (578)
Q Consensus 30 ~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe-~~k~~~~el~~~Le~ 81 (578)
..-+...+..+++.+....-.+..++.-+-....+++ ..++.+......|..
T Consensus 576 ~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~ 628 (1294)
T KOG0962|consen 576 LHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKD 628 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 3446677788888888888888888887777776666 333333333333443
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.17 E-value=39 Score=38.42 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
...+..|.-+|.+....+..|+..+..+.
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.36 E-value=95 Score=32.75 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSD 219 (578)
Q Consensus 173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e 219 (578)
.+...++.|+....-+......+...+..+......++.++..+...
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555665555555555555555555555555555555544443
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.86 E-value=23 Score=35.17 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 206 LETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 206 LEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
|++...+-+.|..++..++..|+.+...|..++.+++.|++...++-.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 333333333334444444444444444444444444444444433333
No 179
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.56 E-value=1.7e+02 Score=35.38 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 197 EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSK 250 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~k 250 (578)
..+..+...+......+......+......+..+...++.....+..++..+..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 389 EAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333334444444444444444444444333
No 180
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.04 E-value=74 Score=30.33 Aligned_cols=89 Identities=21% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 163 EMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK 242 (578)
Q Consensus 163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~ 242 (578)
+...+..++++-..++..|+..+...=...+.+..... .+...+..+..++......+..+..++..++.+..
T Consensus 50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~-------~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~ 122 (177)
T PF13870_consen 50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH-------FLSEELERLKQELKDREEELAKLREELYRVKKERD 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333333333 33333333333333334444444444444555445
Q ss_pred HHHHHHHHHHHHHHhh
Q 008082 243 SLEELVSKLQNDLLNS 258 (578)
Q Consensus 243 ~Le~ei~kL~~el~~~ 258 (578)
.+...+.+|..+.+.+
T Consensus 123 k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 123 KLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 5555555555544443
No 181
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=75.55 E-value=75 Score=30.14 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008082 143 LEKVAESEAAQTKHAESAYAEMQNLRIELTET-------LSLVEKLKNELSYCKESESQALEDVRKS-QMQLETANANLE 214 (578)
Q Consensus 143 le~~~~ak~~~~k~~~~le~el~eL~~el~e~-------~~eie~l~~~l~e~e~~~s~l~~~~~el-~~qLEea~~~le 214 (578)
++.+-.++..-+.-++.+-.++..++.+|.++ ..+++.|......+.......++.+..+ ...+.++-....
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~ 87 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAH 87 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH
Confidence 33444444444444445555544555444444 4444444444444444444444444332 345666666666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+.-.+.-++..-..|...-+.+...+..|..-|.+...-+..+
T Consensus 88 ~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 88 ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66766666666666666666666666666666666665544444
No 182
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=75.49 E-value=57 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.030 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 008082 160 AYAEMQNLRIELTETLSLVEKLKNELSYC 188 (578)
Q Consensus 160 le~el~eL~~el~e~~~eie~l~~~l~e~ 188 (578)
+++...++...+..+...++..+.....+
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33344444455555444444444444444
No 183
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.81 E-value=40 Score=26.69 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=25.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+..++.+.+..+-.....|.++...+..|..+|..|..++..+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555666666666666666666666655544
No 184
>PF13514 AAA_27: AAA domain
Probab=74.17 E-value=2.3e+02 Score=35.17 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008082 477 AARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAML 519 (578)
Q Consensus 477 ~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~L 519 (578)
...+..++..++.....++..+..+....+.|+..-...+..+
T Consensus 675 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 717 (1111)
T PF13514_consen 675 REQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAEL 717 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444444444444555555555545555555555444443
No 185
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.14 E-value=1.4e+02 Score=32.63 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=11.7
Q ss_pred HHHHHHHHhHhHHHHHH
Q 008082 402 EVVEFKASILDKETELM 418 (578)
Q Consensus 402 e~~eLk~~L~e~E~~lq 418 (578)
++..++.+|..+|..|.
T Consensus 310 elE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777776553
No 186
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.07 E-value=85 Score=35.22 Aligned_cols=81 Identities=25% Similarity=0.310 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
...|++|..++..++....-.......+..+|+.+......+..++..+...+..+..+|+..+. +++.+|+-+...
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~---NYE~QLs~MSEH 495 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR---NYEEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 44677777777777777777777888888888888888888888887777888888888777665 666666666666
Q ss_pred HHhh
Q 008082 255 LLNS 258 (578)
Q Consensus 255 l~~~ 258 (578)
+..+
T Consensus 496 Lasm 499 (518)
T PF10212_consen 496 LASM 499 (518)
T ss_pred HHHH
Confidence 5555
No 187
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.61 E-value=1.1e+02 Score=31.11 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082 389 DSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIE 432 (578)
Q Consensus 389 ~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~ 432 (578)
..|....+-+++.+-...=.+..-++..+.++......++.-|.
T Consensus 72 ~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 72 TTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666555555565556666666555555555555
No 188
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.31 E-value=25 Score=28.54 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
....+|...++.+.+.+...+..+..|..+-
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 189
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.36 E-value=1.2e+02 Score=30.89 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccC
Q 008082 466 LTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAG 522 (578)
Q Consensus 466 l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~L~~~ 522 (578)
|..++.+....+..+.............+..++...+ +.+.++.+..+.+++++
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar---~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAR---EDEEEAKEELLEVMSAP 133 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 3444444444455555555544445555555554433 22234444444444443
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=72.28 E-value=1e+02 Score=30.30 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 008082 137 QRLKFQLEKVAE 148 (578)
Q Consensus 137 ~klr~qle~~~~ 148 (578)
.+++..+..+..
T Consensus 40 ~~a~~~~a~~~a 51 (221)
T PF04012_consen 40 RKARQALARVMA 51 (221)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=72.14 E-value=93 Score=29.66 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 164 MQNLRIELTETLSLVEKLKNELSYCKESESQAL-EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK 242 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~-~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~ 242 (578)
+..++-.+......+..+..++...+.....+. -.++.++.+-......|+.-..++..+...+.....-|...+..+.
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333 3455555555555555555555555555555555555555555444
Q ss_pred HHHHHHHHHHHHHHh
Q 008082 243 SLEELVSKLQNDLLN 257 (578)
Q Consensus 243 ~Le~ei~kL~~el~~ 257 (578)
.+..++..+..+|..
T Consensus 88 ~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 88 FLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 192
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.05 E-value=2.2e+02 Score=33.90 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETR 308 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~ 308 (578)
|.+|......++.++..|..+|+.++..
T Consensus 122 i~~l~~~~~~~e~~~~~l~~~l~~~eke 149 (769)
T PF05911_consen 122 IAELSEEKSQAEAEIEDLMARLESTEKE 149 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544433
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=71.59 E-value=1.5e+02 Score=31.94 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=8.4
Q ss_pred chhhHHHHHHHHHHHHH
Q 008082 28 SRVSELESQLAQLQEDL 44 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL 44 (578)
+.|.+|.+|+.---.++
T Consensus 298 k~vQ~L~AQle~~R~q~ 314 (593)
T KOG4807|consen 298 KEVQALRAQLEAWRLQG 314 (593)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34555555555444443
No 194
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=71.12 E-value=1.1e+02 Score=29.94 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 197 EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
..+..+..-|..++..+.....-......++.+-...|+..+.++..|...|.....++..+
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444445555555555555555555555444
No 195
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.58 E-value=1.1e+02 Score=30.00 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008082 291 ARNELRQLRSALDASETRYQE 311 (578)
Q Consensus 291 le~EieeL~s~LE~aE~~lqe 311 (578)
|+.-+..|...|+..++.|.+
T Consensus 148 LEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 196
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.93 E-value=2e+02 Score=32.72 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
..+..+..+|.........+..++..++.++.++
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444555555554444
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=69.73 E-value=1.9e+02 Score=32.21 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 284 LKGELDLARNELRQLRSALDASETRY 309 (578)
Q Consensus 284 L~~el~~le~EieeL~s~LE~aE~~l 309 (578)
+...+..++..+..+...+...+.++
T Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 322 AEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 198
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=69.59 E-value=1.7e+02 Score=31.70 Aligned_cols=280 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHHHHHH------hhHhHhHhHHHHH
Q 008082 45 KKAKEQLNASDSWKRRAQQEAEEAKKQLSAMS---ARLEESQQQLLEITTSEDTRVEELRQ------LSQDRDKAWQSEL 115 (578)
Q Consensus 45 ~~eke~~~~~E~~k~~~~~ELe~~k~~~~el~---~~Le~~~~~~~~~~e~ek~r~~El~k------l~~~~e~~~~~el 115 (578)
.+..+-+.-...|+..+...+..+..+.+.|. .+|+.+...+..-..+...-+.-... ..-..+..+..|+
T Consensus 46 ~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~ 125 (384)
T PF03148_consen 46 KRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEV 125 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHH
Q ss_pred ---HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH
Q 008082 116 ---DAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLR----------------------IE 170 (578)
Q Consensus 116 ---e~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~----------------------~e 170 (578)
..++.-+...+.....++..++..|..|+.-..-|..+.. .+.....|. ..
T Consensus 126 ~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~----ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~ 201 (384)
T PF03148_consen 126 ELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALE----IDTQCLSLNNNSTNISYKPGSTRIPKNSSTPES 201 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCccCCCcccCCcccccccCCChHH
Q ss_pred HHHHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 171 LTETLS-LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE-MLRSDGIKATEAYNTLSLELELSKARVKSLEELV 248 (578)
Q Consensus 171 l~e~~~-eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le-~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei 248 (578)
+...-. -|......+..+..-...+...+..+...+..-..... ++..++.........|..++.....++..++..|
T Consensus 202 W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i 281 (384)
T PF03148_consen 202 WEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNI 281 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008082 249 SKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLE 328 (578)
Q Consensus 249 ~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~ 328 (578)
..|+..|.+..+.. --+.++|..-.-+=.+++-+..-+..
T Consensus 282 ~~L~~ai~~k~~~l----------------------------------------kvaqTRL~~R~~RP~vElcrD~~q~~ 321 (384)
T PF03148_consen 282 EDLEKAIRDKEGPL----------------------------------------KVAQTRLENRTQRPNVELCRDPPQYG 321 (384)
T ss_pred HHHHHHHHHHHhhH----------------------------------------HHHHHHHhhHhcCCchHHHHhhHHHH
Q ss_pred HHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHh
Q 008082 329 RAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKI 380 (578)
Q Consensus 329 ~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei 380 (578)
|-.|+..+..-+..|+..+...+..+..|..-...|..+|
T Consensus 322 ------------L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di 361 (384)
T PF03148_consen 322 ------------LIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDI 361 (384)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.24 E-value=36 Score=32.24 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 227 YNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 227 ~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE 306 (578)
+..+..++..++.++..|...+..|..++..+.... ...+|...+..+..++..+.+.|....
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-----------------t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEP-----------------TNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555555443221 133444455555555555555555443
No 200
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.95 E-value=2.1e+02 Score=32.38 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008082 463 VGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAM 518 (578)
Q Consensus 463 l~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~ 518 (578)
+..+...++............+...+..-.+-++-|..|+ .+. |++.++++.+
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr--~er-rk~Lee~lem 568 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLR--IER-RKQLEEILEM 568 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHh
Confidence 4445555555556666666666666666666667776666 233 6667766665
No 201
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.94 E-value=1.3e+02 Score=29.61 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 111 WQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKE 190 (578)
Q Consensus 111 ~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~ 190 (578)
|+.....++.=|.+. ...-++-|+.|+.++.....-.....+....+..+...|..-|..+..++..|+.++...+.
T Consensus 7 He~af~~iK~YYndI---T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 7 HEKAFQEIKNYYNDI---TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555545544 34445555555555555444444444444444444455555555555555556555554444
Q ss_pred H
Q 008082 191 S 191 (578)
Q Consensus 191 ~ 191 (578)
.
T Consensus 84 d 84 (201)
T PF13851_consen 84 D 84 (201)
T ss_pred H
Confidence 3
No 202
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.57 E-value=67 Score=26.27 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Q 008082 204 MQLETANANLEMLRSDGIKATEAY 227 (578)
Q Consensus 204 ~qLEea~~~le~l~~e~~~l~~~~ 227 (578)
.++..+=.+|..|..++..++...
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 203
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.96 E-value=1.5e+02 Score=30.11 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=18.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 409 SILDKETELMSLTEQNGMLKMEIENR 434 (578)
Q Consensus 409 ~L~e~E~~lq~~~~E~~~lk~~i~~~ 434 (578)
.|+|.+..|.++-+-++.|..++...
T Consensus 134 sleDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45555666688888888888888743
No 204
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=66.95 E-value=11 Score=39.65 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008082 225 EAYNTLSLELELSKARV 241 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~ 241 (578)
..+..+.-++..++..+
T Consensus 119 s~v~~lsTdvsNLksdV 135 (326)
T PF04582_consen 119 SSVSALSTDVSNLKSDV 135 (326)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhhhhh
Confidence 33333333333333333
No 205
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.57 E-value=92 Score=27.48 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 193 SQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSK 250 (578)
Q Consensus 193 s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~k 250 (578)
..++..+..++..|+..+-..+.|-++...|...+..|..+.+.....+..|+..|..
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333333333333333333333333333333333
No 206
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=66.33 E-value=1.1e+02 Score=34.04 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 172 TETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK 242 (578)
Q Consensus 172 ~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~ 242 (578)
.....++..|-+++-++.+.+--+...++++-.-|-.....-+.+..+..++++.|.+....+.+.+.+++
T Consensus 229 ~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 229 SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555555555555555555555566666666665555555555443
No 207
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=66.08 E-value=1.7e+02 Score=30.83 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRS 218 (578)
Q Consensus 173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~ 218 (578)
.+.=+|+-|+..+.+++...+++++.+.+....++..+..+..+..
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666677777777777777777665555555444444443333
No 208
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.71 E-value=27 Score=25.86 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 219 DGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 219 e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
+..-|+..|+.|..+.+.+..++..|..+|..|..
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544444444444444443
No 209
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=65.39 E-value=2.4e+02 Score=31.82 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=11.7
Q ss_pred HHHHhhhhhHhHHhHHHHHHHHHHHH
Q 008082 327 LERAKSESSQREADLETELKNVKAQI 352 (578)
Q Consensus 327 l~~~k~E~~qr~~el~~el~~~~~el 352 (578)
+.+.++...-++.+...++..+...+
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~lr~~l 378 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKLRNQL 378 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 210
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.10 E-value=81 Score=26.27 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 201 el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+...+..|=.+|.-|.-++.+++.....+..+.+.+......|..+...|+.+-..|.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555444444455555555555555553
No 211
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.80 E-value=2.6e+02 Score=32.11 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008082 479 RVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAA 515 (578)
Q Consensus 479 ~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~ 515 (578)
.++.-++..=+++..-+.-+.-++.=+++.++.++--
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv 314 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIV 314 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhh
Confidence 5555555555566555555555555567767766543
No 212
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.23 E-value=95 Score=29.36 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 345 LKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKE 414 (578)
Q Consensus 345 l~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E 414 (578)
+..+..++..++..+. .+..+.+.|..++..+.+.-...+|...+..|..++..|...|....
T Consensus 74 l~~ld~ei~~L~~el~-------~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELA-------ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 34444445555555554455677888888888888888877775443
No 213
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.94 E-value=2.4e+02 Score=33.23 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 154 TKHAESAYAEMQNLRIELTETLSLVEKLKNEL 185 (578)
Q Consensus 154 ~k~~~~le~el~eL~~el~e~~~eie~l~~~l 185 (578)
.+..+-++.++..++.++..++..++..+.+.
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445667778888888888888888877763
No 214
>PLN03188 kinesin-12 family protein; Provisional
Probab=63.80 E-value=3.8e+02 Score=33.57 Aligned_cols=95 Identities=27% Similarity=0.354 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008082 393 AVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADK 472 (578)
Q Consensus 393 ~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~ 472 (578)
.+-++.|-.++..|++ +.|.+...+.+||..|+.++.. - +|+..++= +++..|+.
T Consensus 1154 ~~f~~alaae~s~l~~---ereker~~~~~enk~l~~qlrd-----------t---aeav~aag-ellvrl~e------- 1208 (1320)
T PLN03188 1154 SKFINALAAEISALKV---EREKERRYLRDENKSLQAQLRD-----------T---AEAVQAAG-ELLVRLKE------- 1208 (1320)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHhh-----------H---HHHHHHHH-HHHHHHHH-------
Confidence 4455556666666665 4455666666666666666551 1 11111111 33333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008082 473 SSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAML 519 (578)
Q Consensus 473 ~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~L 519 (578)
+.+-+..|+.+...++.|-.++..|.|..+|.-+.....|
T Consensus 1209 -------aeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~ 1248 (1320)
T PLN03188 1209 -------AEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTL 1248 (1320)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555566666666666666666677766665553
No 215
>PRK11519 tyrosine kinase; Provisional
Probab=63.30 E-value=3e+02 Score=32.39 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 154 TKHAESAYAEMQNLRIELTETLSLVEKLKNEL 185 (578)
Q Consensus 154 ~k~~~~le~el~eL~~el~e~~~eie~l~~~l 185 (578)
.+...-++.++..++.++..++..+.+.+.+-
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445677778888888888888777777763
No 216
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.21 E-value=7.7 Score=33.84 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=33.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 184 ELSYCKESESQALEDVRKSQMQL-ETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 184 ~l~e~e~~~s~l~~~~~el~~qL-Eea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
.+..++....++...++++...| ++|+.-+..-+.....++.....+...+.+....+..|+.+|..|..
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555 55555555444444444444444444444444433344444444433
No 217
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.93 E-value=1.9e+02 Score=29.60 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhh
Q 008082 247 LVSKLQNDLLNSSNK 261 (578)
Q Consensus 247 ei~kL~~el~~~~~k 261 (578)
.+..+++++..|..+
T Consensus 64 ~l~~ak~eLqe~eek 78 (258)
T PF15397_consen 64 QLQQAKAELQEWEEK 78 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555443
No 218
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.86 E-value=1.2e+02 Score=28.87 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=34.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082 186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA 239 (578)
Q Consensus 186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~ 239 (578)
..+......+...+..++.+++.+..++..|..+...+++.|..|..-|+..+.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666677777777777777777777766665543
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.43 E-value=3.3e+02 Score=32.16 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 008082 128 ALGSAMNEIQRLKFQL 143 (578)
Q Consensus 128 ~L~~~~~el~klr~ql 143 (578)
.|....+++..++...
T Consensus 580 ~L~~l~e~~~~l~~~a 595 (717)
T PF10168_consen 580 ELQELQEERKSLRESA 595 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 220
>PRK11281 hypothetical protein; Provisional
Probab=61.36 E-value=4.1e+02 Score=33.14 Aligned_cols=275 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH------
Q 008082 125 DSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALED------ 198 (578)
Q Consensus 125 ~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~------ 198 (578)
+.+.+..+++++++ +...+...++-......+-..-.++.....+.+.....+.+.-.++..+......++..
T Consensus 37 ~~~~iq~~l~~~~~-~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~ 115 (1113)
T PRK11281 37 TEADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR 115 (1113)
T ss_pred CHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q 008082 199 -------VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHL 271 (578)
Q Consensus 199 -------~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~ 271 (578)
...++..+.+....+...+..+..+...+.++....+..+..+......+..++.++.........
T Consensus 116 ~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~------- 188 (1113)
T PRK11281 116 ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA------- 188 (1113)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc-------
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHH
Q 008082 272 SQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQ 351 (578)
Q Consensus 272 ~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~e 351 (578)
........|+.+...++.++.-.+..+.... .+..=....+..........+..+..++..+......
T Consensus 189 ----l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~--------~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 189 ----LRPSQRVLLQAEQALLNAQNDLQRKSLEGNT--------QLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHhHHHH---------HhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 008082 352 IEELRANLLDKETE---------LQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTE 422 (578)
Q Consensus 352 leel~~~l~d~E~e---------L~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~ 422 (578)
.-+....-...... ++...+.|..|...+ ..+......+..+....+..++........+.+
T Consensus 257 ~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L---------~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~e 327 (1113)
T PRK11281 257 LSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRL---------LKATEKLNTLTQQNLRVKNWLDRLTQSERNIKE 327 (1113)
T ss_pred HHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 008082 423 QNGMLK 428 (578)
Q Consensus 423 E~~~lk 428 (578)
+.+.++
T Consensus 328 qi~~l~ 333 (1113)
T PRK11281 328 QISVLK 333 (1113)
T ss_pred HHHHhc
No 221
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.62 E-value=2.7e+02 Score=30.77 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008082 238 KARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 238 ~~e~~~Le~ei~kL~~el~~~ 258 (578)
..++..+...+..++.++..+
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444443
No 222
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.30 E-value=1.9e+02 Score=29.00 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 391 KLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENR 434 (578)
Q Consensus 391 El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~ 434 (578)
++...+..++..+..+++++......+..+......|..+|..+
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777778877666666666666666666666633
No 223
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.94 E-value=2e+02 Score=29.19 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008082 167 LRIELTETLSLVEKLKNELS 186 (578)
Q Consensus 167 L~~el~e~~~eie~l~~~l~ 186 (578)
++..+..+....+.++.++.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334443333444444433
No 224
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.90 E-value=81 Score=25.36 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008082 418 MSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLT 467 (578)
Q Consensus 418 q~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~ 467 (578)
+.+..+|..|+.++....++ .+.+....+.|+..-..+...++.|+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~E----R~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREE----RAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555666665555544444 44444444555555545555555544
No 225
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.63 E-value=4.2e+02 Score=32.76 Aligned_cols=25 Identities=8% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 008082 489 AASTEMEAELRKLKVQSDQWRKAAE 513 (578)
Q Consensus 489 ~~~~~lEaEL~klr~q~eq~RkaaE 513 (578)
.....+..++..++...+.|..-.+
T Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~L~~ 884 (1047)
T PRK10246 860 QQQQALMQQIAQATQQVEDWGYLNS 884 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666655444
No 226
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=59.07 E-value=2e+02 Score=28.82 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 008082 135 EIQRLKFQLE 144 (578)
Q Consensus 135 el~klr~qle 144 (578)
++..++.+++
T Consensus 53 ~~~~l~~~l~ 62 (240)
T PF12795_consen 53 EIRELQKELE 62 (240)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 227
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.96 E-value=73 Score=33.93 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
++..+..++......+..+...+..|..++..+..|.............+..+++.....+......+..|..+...|
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 334444444444444444444444444444444444444444444444444444444445555555555555555555
No 228
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.52 E-value=2.3e+02 Score=29.33 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008082 400 EAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAAR 479 (578)
Q Consensus 400 e~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~ 479 (578)
+.-+.-|++.|-|.+..|+.=--|+..|+.++.++..+| ++|=.-.+|+ .-+=+++.+.++.|.+-++-......+
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW---IEEECHRVEA-QLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDW---IEEECHRVEA-QLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 345566777777777777776667777888888777766 2222223322 222235555566666666665433322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Q 008082 480 ----VTEQLDAAQAASTEMEAELRKL 501 (578)
Q Consensus 480 ----l~eql~~ae~~~~~lEaEL~kl 501 (578)
+..-+-..+-.|..||.=|.-+
T Consensus 143 kDkGiQKYFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 143 KDKGIQKYFVDINIQNKKLESLLQSM 168 (305)
T ss_pred hhhhHHHHHhhhhhhHhHHHHHHHHH
Confidence 3556667777788888777653
No 229
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=58.27 E-value=2e+02 Score=28.46 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 008082 290 LARNELRQLRSALD 303 (578)
Q Consensus 290 ~le~EieeL~s~LE 303 (578)
.+..+++.|+..|.
T Consensus 135 ~l~~e~erL~aeL~ 148 (202)
T PF06818_consen 135 SLRREVERLRAELQ 148 (202)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444433333
No 230
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=58.19 E-value=2.1e+02 Score=28.74 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCC
Q 008082 458 EALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATAMLSAGN 523 (578)
Q Consensus 458 ~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~~L~~~~ 523 (578)
.+...+..+..++.........++.++...+.....+.+.+.-+.. .....++.+.--.++++|.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a-r~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA-RKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC
Confidence 4445555556666666666666666666666666666666655443 3333455555555555443
No 231
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.61 E-value=2.9e+02 Score=31.19 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 220 GIKATEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 220 ~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
...++..+..+.+.|-.++..+..-.++|..|+
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666777777666666666666665554
No 232
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.76 E-value=2.4e+02 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 008082 132 AMNEIQRLKFQLEKVA 147 (578)
Q Consensus 132 ~~~el~klr~qle~~~ 147 (578)
...+...++.+++...
T Consensus 32 ~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 32 LKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 233
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.65 E-value=45 Score=24.70 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008082 223 ATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNK 261 (578)
Q Consensus 223 l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k 261 (578)
++..|+.|...++.+..+...|..+...|.+++..+.++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888888888888877776554
No 234
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=55.49 E-value=3.2e+02 Score=30.12 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 188 CKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 188 ~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
.+.....+......+-.++++++..++.|+.++.. +.+.-.-..++.+..++..+...|.++..
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~--RgvRp~~~qle~v~kdi~~a~~~L~~m~~ 267 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQ--RGVRPSPKQLETVAKDISRASKELKKMKE 267 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666667777777766666533 23333333333333333333333333333
No 235
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=55.01 E-value=2.1e+02 Score=27.88 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008082 464 GFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQWRKAAEAATA 517 (578)
Q Consensus 464 ~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~RkaaE~~~~ 517 (578)
..+..-.......+.+-+.-|+.+..+...|...|...|...+..++++.-++.
T Consensus 126 ~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~ 179 (188)
T PF05335_consen 126 ANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAAC 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455557778888888888888888788888777765543
No 236
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=54.02 E-value=3.3e+02 Score=29.71 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSAL 302 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~L 302 (578)
+..|+++.+..+.-...+-.++
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333333
No 237
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=53.06 E-value=1.5e+02 Score=25.49 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008082 164 MQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIK 222 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~ 222 (578)
+-.+...+..+...+......+..++..+.++...+.......-++.+..+++..+...
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~ 63 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKK 63 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444444444444555555555555555555554444444444444444444333
No 238
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.53 E-value=2.5e+02 Score=28.00 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRLKF 141 (578)
Q Consensus 129 L~~~~~el~klr~ 141 (578)
+...+.++..++.
T Consensus 116 ~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 116 LHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444444443
No 239
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.33 E-value=2.6e+02 Score=29.35 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 164 MQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDG 220 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~ 220 (578)
+.+++..|.+++.-.-........+....+.+.-.|.-+.-.|++....+-.+.+++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544433333333444444555555555555555555555544444443
No 240
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.32 E-value=1.1e+02 Score=30.12 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008082 162 AEMQNLRIELTETLSLVEKLKNELSYC-KESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240 (578)
Q Consensus 162 ~el~eL~~el~e~~~eie~l~~~l~e~-e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e 240 (578)
.+.-.|+.+|.++...|..+....+.. ...-+.+.-...+++.-|+=-...+..+..-...--..+.++..+|+.++.+
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 345556666666555555555554431 1111122222223333333333333333211111112344455555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 008082 241 VKSLEELVSKLQNDLL 256 (578)
Q Consensus 241 ~~~Le~ei~kL~~el~ 256 (578)
+..|+.-+..=+.++.
T Consensus 176 V~~Le~~L~~k~~eL~ 191 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQ 191 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555544444443
No 241
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.06 E-value=1.7e+02 Score=33.01 Aligned_cols=7 Identities=57% Similarity=0.672 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008082 247 LVSKLQN 253 (578)
Q Consensus 247 ei~kL~~ 253 (578)
++..|+.
T Consensus 160 ~l~~l~~ 166 (525)
T TIGR02231 160 QLSELQN 166 (525)
T ss_pred HHHHHHH
Confidence 3333333
No 242
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.80 E-value=1.6e+02 Score=25.47 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 008082 241 VKSLEELVSKLQN 253 (578)
Q Consensus 241 ~~~Le~ei~kL~~ 253 (578)
+..++..+..+..
T Consensus 83 i~~le~~~~~~e~ 95 (108)
T PF02403_consen 83 IKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 243
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=51.71 E-value=1.9e+02 Score=30.13 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 008082 491 STEMEAELRKLKVQSDQWRKAA 512 (578)
Q Consensus 491 ~~~lEaEL~klr~q~eq~Rkaa 512 (578)
..-...++.+|+.|||-||-..
T Consensus 200 l~~~~Eq~erl~iqcdVWrsKF 221 (383)
T KOG4074|consen 200 LMVEDEQSERLRIQCDVWRSKF 221 (383)
T ss_pred hhhhHHHHHHHhhHHHHHHHHH
Confidence 3345556777777888887554
No 244
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=51.19 E-value=3.9e+02 Score=29.78 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008082 283 KLKGELDLARNELRQLRSALD 303 (578)
Q Consensus 283 eL~~el~~le~EieeL~s~LE 303 (578)
.|..++...+.+|..|++...
T Consensus 334 kl~~eie~kEeei~~L~~~~d 354 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNID 354 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 333334444444444443333
No 245
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.15 E-value=1.3e+02 Score=24.39 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008082 191 SESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSK 238 (578)
Q Consensus 191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~ 238 (578)
.+.++--.+.-+++.+++++..-..|..+...+....+.+..+-++++
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555544444444444444443333333
No 246
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.09 E-value=6e+02 Score=31.94 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 008082 195 ALEDVRKSQMQLETANANLEMLRSDG-------IKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMG 267 (578)
Q Consensus 195 l~~~~~el~~qLEea~~~le~l~~e~-------~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~ 267 (578)
|....+.+..+|+.-+...+.|...+ ..+-+.|.+|.+...++-+.-+...+=|..++..-...+.|
T Consensus 1077 ~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~k------ 1150 (1320)
T PLN03188 1077 SRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVR------ 1150 (1320)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 55556666666666666655554443 34455566665555554444444444444444433333222
Q ss_pred cccccccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008082 268 DVHLSQKNGENEE-IDKLKGELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAY 324 (578)
Q Consensus 268 ~~~~~~~~e~~ee-i~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~ 324 (578)
-.+.. ++-|..++..++.+.+.-+. -+..|.+-++.|++..-
T Consensus 1151 --------g~~~~f~~alaae~s~l~~ereker~-------~~~~enk~l~~qlrdta 1193 (1320)
T PLN03188 1151 --------GAESKFINALAAEISALKVEREKERR-------YLRDENKSLQAQLRDTA 1193 (1320)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHhhHH
Confidence 11223 55555555555554443322 23455556666665333
No 247
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=49.91 E-value=1e+02 Score=34.82 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 008082 220 GIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLR 299 (578)
Q Consensus 220 ~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~ 299 (578)
+.++..-..++..+|-+++.....|..+|++++..|++++.. |..-+-++..++.+|+..+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~-------------------i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRL-------------------IPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHhHHHHHH
Confidence 344455556666777777666666666777666665555331 3333445555566666655
Q ss_pred HHHHHHH
Q 008082 300 SALDASE 306 (578)
Q Consensus 300 s~LE~aE 306 (578)
.+++++-
T Consensus 142 ~~~~El~ 148 (907)
T KOG2264|consen 142 RQLEELR 148 (907)
T ss_pred HHHHHHH
Confidence 5555443
No 248
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.80 E-value=4.9e+02 Score=30.57 Aligned_cols=21 Identities=10% Similarity=0.436 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008082 390 SKLAVELNKLEAEVVEFKASI 410 (578)
Q Consensus 390 ~El~k~~kkle~e~~eLk~~L 410 (578)
.++...+.+|-.++..|+..+
T Consensus 233 ~~~~~~k~rl~~d~E~Lr~e~ 253 (916)
T KOG0249|consen 233 EEMRHDKDKLRTDIEDLRGEL 253 (916)
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 444444445555555555544
No 249
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=48.72 E-value=5e+02 Score=30.37 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008082 391 KLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIEN 433 (578)
Q Consensus 391 El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~ 433 (578)
.|+..+-.....+..+..+|..+...++....+...++.++..
T Consensus 525 qLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~ 567 (739)
T PF07111_consen 525 QLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ 567 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444555666666666666777777777777776663
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.63 E-value=2.1e+02 Score=26.04 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 197 EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELV 248 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei 248 (578)
..+..+-..|++..........++..+...+..+..+++.+..-+..|+..|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445554444444444444444444444444444444444333333
No 251
>PLN02939 transferase, transferring glycosyl groups
Probab=47.35 E-value=6.2e+02 Score=31.03 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008082 425 GMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADK 472 (578)
Q Consensus 425 ~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~ 472 (578)
..++.+|+..+..++...+++.+.++.-...-.+.+..+..+-.+-..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 445667777777777777777777777777777777777666655544
No 252
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.08 E-value=5.4e+02 Score=30.22 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=5.4
Q ss_pred CCCCCcccccC
Q 008082 545 TGSPYCEELDD 555 (578)
Q Consensus 545 ~~~~~~~~~~~ 555 (578)
.+||..++..+
T Consensus 616 ~isP~~~~~~E 626 (670)
T KOG0239|consen 616 NISPAAAALFE 626 (670)
T ss_pred EeCccHHHHhh
Confidence 45565554433
No 253
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.69 E-value=2e+02 Score=27.58 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 232 LELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQ 310 (578)
Q Consensus 232 ~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lq 310 (578)
.++-.+...+.+|...++...++|..+..-. .+++++.++.+|+.++...+.+|...++...
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-----------------t~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELSSAL-----------------TTEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444555555555555555552211 1778888888888888888888887776654
No 254
>PF00418 Tubulin-binding: Tau and MAP protein, tubulin-binding repeat; InterPro: IPR001084 Microtubules consist of tubulins as well as a group of additional proteins collectively known as the Microtubule Associated Proteins (MAP). MAP's have been classified into two classes: high molecular weight MAP's and Tau protein. The Tau proteins promote microtubule assembly and stabilise microtubules. The C-terminal region of these proteins contains three or four tandem repeats of a conserved domain of about thirty amino acid residues which is implicated in tubulin-binding and which seems to have a stiffening effect on microtubules.; GO: 0007026 negative regulation of microtubule depolymerization
Probab=45.49 E-value=12 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=13.0
Q ss_pred chhhcccCCCCCCCCCCC
Q 008082 526 KFVERTGSLDGQYSPMIG 543 (578)
Q Consensus 526 ~~~~~~~s~~~~~~~~~~ 543 (578)
.+..+|||||+-.|.-||
T Consensus 12 ~v~SK~GS~~N~~H~PGG 29 (31)
T PF00418_consen 12 NVQSKCGSLDNIKHKPGG 29 (31)
T ss_pred cccccccccccccccCCC
Confidence 456899999996665443
No 255
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.86 E-value=2.9e+02 Score=31.14 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=18.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 214 EMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 214 e~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
.....++..+...+..+...+..+..++..|+.++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333344444444444444445555555555555544
No 256
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.75 E-value=6e+02 Score=30.10 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
..++..+...+..+...+..+...+.....
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444334433333
No 257
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.47 E-value=3e+02 Score=26.61 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 205 QLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 205 qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.|+++-..++.-..+...|..-..-|..+|+.....+..|..+|.+|..+...+
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444443444444444445566666666666666666666666655544
No 258
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.37 E-value=1.7e+02 Score=23.80 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=29.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
...+....|+.+|+.+...++....+...|...|..|..++..+
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777777777777776666666665555
No 259
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=44.34 E-value=3.3e+02 Score=26.98 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 241 VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQEE 312 (578)
Q Consensus 241 ~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE 312 (578)
+.+|+..|..+...+.++-| | +.|..|+..+..++..+...+..+..++..|..-
T Consensus 11 ~d~lq~~i~~as~~lNd~TG-Y----------------s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~a 65 (207)
T PF05546_consen 11 MDSLQETIFTASQALNDVTG-Y----------------SEIEKLKKSIEELEDELEAARQEVREAKAAYDDA 65 (207)
T ss_pred HHHHHHHHHHHHHHHHhccC-h----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666634 3 4588888888888888888888888887777633
No 260
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.32 E-value=2.7e+02 Score=25.98 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=26.2
Q ss_pred CCCCCCCCccccC--cchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 008082 14 RKSPRSPALEKQR--PSRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEE 67 (578)
Q Consensus 14 ~~~~~~~~~~~~~--~~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~ 67 (578)
||-|+.|+||.++ .-.+..+-.....++..|.....++...+.+.......++.
T Consensus 4 ~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~ 59 (160)
T PF13094_consen 4 RRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALER 59 (160)
T ss_pred hhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777553 22333333344444444444444444444444444444444
No 261
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=44.17 E-value=3e+02 Score=27.03 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=8.6
Q ss_pred HHHHhhhccCCCcchhhcc
Q 008082 513 EAATAMLSAGNNGKFVERT 531 (578)
Q Consensus 513 E~~~~~L~~~~~~~~~~~~ 531 (578)
...+.-||....+++..++
T Consensus 165 k~ei~~lAv~iA~kiL~k~ 183 (205)
T PRK06231 165 QKESVELAMLAAEELIKKK 183 (205)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4444445543344444443
No 262
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=43.97 E-value=3.3e+02 Score=26.94 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082 202 SQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA 239 (578)
Q Consensus 202 l~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~ 239 (578)
+...+...+..+...+..+..++..|......-..++.
T Consensus 37 LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQr 74 (207)
T PF05546_consen 37 LKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQR 74 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444555544444444444
No 263
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=43.87 E-value=3.5e+02 Score=27.09 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=81.1
Q ss_pred HHHHHHhHhHHHHHhhHHHHHHhHHHH---hcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 008082 353 EELRANLLDKETELQSISEENEGLNLK---IKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKM 429 (578)
Q Consensus 353 eel~~~l~d~E~eL~~L~ee~~~L~~e---i~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~ 429 (578)
..++..+.++-..+..+..+...+... .....++-+..+|...+-.....+.+++..|-+....+-....-...+..
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~ 120 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQ 120 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 333333333333333333333444332 23345566777777777777777777777776666655444333333333
Q ss_pred HHHHHHHhhhhhHHHHH-------HHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 430 EIENREMERNKVNDEAI-------SLAEAAR-----VAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAE 497 (578)
Q Consensus 430 ~i~~~~~e~~~~~~e~~-------~~le~a~-----~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaE 497 (578)
.+...-..++.+...+. ..+..++ ....-+..++..++.++.......+=+..+.+-.......++..
T Consensus 121 ~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~ 200 (240)
T PF12795_consen 121 QLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQ 200 (240)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222222221111 1111111 11222334556667777766666666677888888888888888
Q ss_pred HHHHHHhHHHH
Q 008082 498 LRKLKVQSDQW 508 (578)
Q Consensus 498 L~klr~q~eq~ 508 (578)
+.-|+......
T Consensus 201 l~~Lq~~ln~~ 211 (240)
T PF12795_consen 201 LQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHH
Confidence 88888644443
No 264
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.32 E-value=5.3e+02 Score=29.07 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 008082 343 TELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTE 422 (578)
Q Consensus 343 ~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~ 422 (578)
.++..++..+-.++..+..+.+++-...+++.+|...| .++.+.++-+-.+++++...| +....
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql---------~d~qkk~k~~~~Ekeel~~~L-------q~~~d 268 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL---------VDLQKKIKYLRHEKEELDEHL-------QAYKD 268 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHHH-------HHHHh
Confidence 34445555555556666666666666777888888877 677777777778888777777 43333
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 008082 423 QNGMLKMEIENREMERNKVNDEAISLAEAARV 454 (578)
Q Consensus 423 E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~ 454 (578)
-...+..+.. |++-..+|++..+.+|..
T Consensus 269 a~~ql~aE~~----EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 269 AQRQLTAELE----ELEDKYAECMQMLHEAEE 296 (596)
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3333333333 344446666666655543
No 265
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.21 E-value=36 Score=29.73 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008082 160 AYAEMQNLRIELTETLSLV-EKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAY 227 (578)
Q Consensus 160 le~el~eL~~el~e~~~ei-e~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~ 227 (578)
++.....+..++.++...+ +..+.-+.+.......+......+..+|.++...++.+...+..|+.-+
T Consensus 13 ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 13 AEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333322 3344444444444444445555555555555555555555555554333
No 266
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.61 E-value=7.7e+02 Score=30.78 Aligned_cols=269 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----------------HH
Q 008082 137 QRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALED----------------VR 200 (578)
Q Consensus 137 ~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~----------------~~ 200 (578)
..++++++.+.+.+....+..-..-..--..-.+++........++..+.++-.....++.. ..
T Consensus 26 ~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~ 105 (1109)
T PRK10929 26 KQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTD 105 (1109)
T ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhH
Q 008082 201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEE 280 (578)
Q Consensus 201 el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~ee 280 (578)
+++.++......+.++........+....+...+...-.........+..++..+......... .....
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~-----------l~~a~ 174 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTP-----------LAQAQ 174 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCc-----------ccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRYQ---EEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRA 357 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~lq---eE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~ 357 (578)
...|+.+...++..+..++..+.....+.. -.....+.++...-..+..+...+..+-. .+.+..-.+......
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~---~~se~~~~~~~~~~~ 251 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ---REAERALESTELLAE 251 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHH
Q ss_pred HhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 008082 358 NLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLK 428 (578)
Q Consensus 358 ~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk 428 (578)
...+.-.-++...+.|..|...+ .........+..+....+.++......+..+.++.+.++
T Consensus 252 ~~~~~~~~i~~~~~~N~~Ls~~L---------~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 252 QSGDLPKSIVAQFKINRELSQAL---------NQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred hhccCChHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 267
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=42.59 E-value=4.3e+02 Score=27.84 Aligned_cols=16 Identities=38% Similarity=0.187 Sum_probs=11.4
Q ss_pred CcchhhcccCCCCCCCC
Q 008082 524 NGKFVERTGSLDGQYSP 540 (578)
Q Consensus 524 ~~~~~~~~~s~~~~~~~ 540 (578)
|| .+-|.||||.+.|+
T Consensus 309 ~~-~~~~~~~l~~p~~~ 324 (426)
T KOG2008|consen 309 FP-AVVRPGSLDLPSPV 324 (426)
T ss_pred Cc-cccCCCCCCCCCCc
Confidence 44 34578999988776
No 268
>PRK00736 hypothetical protein; Provisional
Probab=42.30 E-value=1.8e+02 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008082 164 MQNLRIELTETLSLVEKLKNE 184 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l~~~ 184 (578)
+.+|..++.-....|+.|+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~ 27 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQ 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 269
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.65 E-value=2.8e+02 Score=26.08 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008082 204 MQLETANANLE 214 (578)
Q Consensus 204 ~qLEea~~~le 214 (578)
.+|.++..+|.
T Consensus 34 ~ql~~~d~~i~ 44 (155)
T PF06810_consen 34 TQLKEADKQIK 44 (155)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 270
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.51 E-value=2.7e+02 Score=25.16 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRLKFQLEKVAESEA 151 (578)
Q Consensus 129 L~~~~~el~klr~qle~~~~ak~ 151 (578)
+...+.+.+.+.+++..+.-.+.
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~ 30 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQ 30 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665554443
No 271
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.36 E-value=6.7e+02 Score=29.73 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhhhcc
Q 008082 504 QSDQWRKAAEAATAMLSA 521 (578)
Q Consensus 504 q~eq~RkaaE~~~~~L~~ 521 (578)
+..+.|.+.++...-|+.
T Consensus 648 ~l~~~r~~ld~qI~RLsq 665 (1480)
T COG3096 648 ELGARKNALDEEIERLSQ 665 (1480)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 566777788888887875
No 272
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.26 E-value=1.6e+02 Score=23.61 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082 163 EMQNLRIELTETLSLVEKLKNELSYCKESESQ 194 (578)
Q Consensus 163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~ 194 (578)
.+.+|...+.-....|+.|+..+-.-...+..
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~ 36 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDR 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333
No 273
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=41.23 E-value=6.8e+02 Score=29.73 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASET 307 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~ 307 (578)
...+.-+++.+-..+..++-.|+.++.
T Consensus 496 ~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 496 TTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 444444555555555555555665553
No 274
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.37 E-value=3.8e+02 Score=26.51 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 008082 401 AEVVEFKA 408 (578)
Q Consensus 401 ~e~~eLk~ 408 (578)
.++..|++
T Consensus 208 ~eLa~LK~ 215 (219)
T TIGR02977 208 RELAALKA 215 (219)
T ss_pred HHHHHHHh
Confidence 34444444
No 275
>PRK00846 hypothetical protein; Provisional
Probab=40.36 E-value=2.2e+02 Score=23.73 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 008082 161 YAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQL 206 (578)
Q Consensus 161 e~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qL 206 (578)
+..+.+|...+.-....|+.|+..+-.....+..++..+.-+..+|
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333333333
No 276
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.21 E-value=3.9e+02 Score=26.67 Aligned_cols=10 Identities=50% Similarity=0.547 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008082 246 ELVSKLQNDL 255 (578)
Q Consensus 246 ~ei~kL~~el 255 (578)
++-++|++++
T Consensus 200 ee~~~Lq~~i 209 (216)
T KOG1962|consen 200 EEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 277
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.12 E-value=4e+02 Score=26.80 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 163 EMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLE 214 (578)
Q Consensus 163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le 214 (578)
.+..+..+-..+..++..+..++..++....++...+.....++..++..++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444444333
No 278
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=39.77 E-value=2.6e+02 Score=24.53 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 190 ESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKL 251 (578)
Q Consensus 190 ~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL 251 (578)
...+-|..-|-+-+..-..+...+......+.+++.+.++|...-..+..++..|+.++...
T Consensus 12 aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 12 AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444455555555556666666777777776666666666666666643
No 279
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.71 E-value=2.5e+02 Score=24.27 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 187 YCKESESQALEDVRKSQMQLETANANLE 214 (578)
Q Consensus 187 e~e~~~s~l~~~~~el~~qLEea~~~le 214 (578)
.+......+...+..+..++.+....++
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 10 QLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433333
No 280
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.34 E-value=3.7e+02 Score=26.18 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=11.8
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 008082 122 QSMDSAALGSAMNEIQRLKFQLE 144 (578)
Q Consensus 122 ~~~~~~~L~~~~~el~klr~qle 144 (578)
|.-++..|.+-+.+|=.++....
T Consensus 84 ~GFnV~~l~~RL~kLL~lk~~~~ 106 (190)
T PF05266_consen 84 HGFNVKFLRSRLNKLLSLKDDQE 106 (190)
T ss_pred cCCccHHHHHHHHHHHHHHHhHH
Confidence 55555555555555444444443
No 281
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.05 E-value=2.5e+02 Score=24.16 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRYQE 311 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~lqe 311 (578)
+..|..+...+..++..+...+..++..+..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777766666554
No 282
>PRK04325 hypothetical protein; Provisional
Probab=38.73 E-value=2.2e+02 Score=23.33 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008082 164 MQNLRIELTETLSLVEKLKN 183 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l~~ 183 (578)
+.+|..++.-....|+.|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 283
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.18 E-value=6.9e+02 Score=28.94 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=26.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 214 EMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 214 e~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+|++....|..++.+|...+-.++.+-...++.+...+..+.++
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 456666666666777776666666655555555555555444444
No 284
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.15 E-value=2.4e+02 Score=24.65 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSK 250 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~k 250 (578)
..+..+...+.+++.+++.+...|..
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333333
No 285
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=37.94 E-value=6e+02 Score=28.15 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 008082 188 CKESESQALEDVRKSQMQLETANANLEMLRSDG--IKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAES 265 (578)
Q Consensus 188 ~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~--~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~ 265 (578)
..+.+.-+...+.....++..++..+-..+... ..-... .+..-.-+..|+.++..++.++..+..-
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~-------a~~~~~lI~~Le~qLa~~~aeL~~L~~~---- 308 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKET-------ITAIYQLIAGFETQLAEAKAEYAQLMVN---- 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 345666666666667777777776666655542 111211 2222233455666666666666655331
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 266 MGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALD 303 (578)
Q Consensus 266 e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE 303 (578)
.......|..|...+..++.+|...+..+-
T Consensus 309 --------~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 309 --------GLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred --------cCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 012234477777777777777777766663
No 286
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.92 E-value=4.8e+02 Score=26.97 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 197 EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLN 257 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~ 257 (578)
+.+......++.....+...+.++.++...+......|..+..+-..+..-|..+.+.+..
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334433333333333334443333333333333333333333333334433333
No 287
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.91 E-value=1.8e+02 Score=29.56 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 227 YNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 227 ~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE 306 (578)
-.+++.++-....+++.++....+|..-+..... .+++-+++.++..++.+|+.++..+...+
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~-----------------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT-----------------VEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777777777766654322 14477777888888888888877776655
Q ss_pred HHH
Q 008082 307 TRY 309 (578)
Q Consensus 307 ~~l 309 (578)
.+.
T Consensus 190 ~~v 192 (262)
T PF14257_consen 190 DRV 192 (262)
T ss_pred Hhh
Confidence 443
No 288
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.51 E-value=4.9e+02 Score=27.02 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 008082 134 NEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQA 195 (578)
Q Consensus 134 ~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l 195 (578)
.||..||.||-...+-=...+=|+=++.--+.+.+.+|..+...|+.++..+.+.++-+.++
T Consensus 89 tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 35555556655444333333333222333346777777777777777777777766555443
No 289
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=37.38 E-value=25 Score=27.16 Aligned_cols=29 Identities=38% Similarity=0.543 Sum_probs=16.0
Q ss_pred CCCCCcccccCCc---cccccchhHHHhHhhhhcC
Q 008082 545 TGSPYCEELDDDS---PKKKNANMLKKFGVLWKKG 576 (578)
Q Consensus 545 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~k~ 576 (578)
.-||+++++++++ .+|+.+- -+-.||||.
T Consensus 7 plsP~~~~~~~~~~~~~~krt~e---elR~LWrkA 38 (56)
T PF11830_consen 7 PLSPVMEEGPDSSPVEKKKRTRE---ELRELWRKA 38 (56)
T ss_pred CCCCcccCCCCCccccccccCHH---HHHHHHHHH
Confidence 3467766554442 3333333 466899984
No 290
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.92 E-value=2e+02 Score=24.38 Aligned_cols=63 Identities=29% Similarity=0.433 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 008082 286 GELDLARNELRQLRSALDASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETE 365 (578)
Q Consensus 286 ~el~~le~EieeL~s~LE~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~e 365 (578)
.+++.++..+...+.+|+.++.+|.... +.- +.|. .+..+...+...+..-|.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~e--Ls~----------------e~R~--------~lE~E~~~l~~~l~~~E~e 58 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRE--LSP----------------EARR--------SLEKELNELKEKLENNEKE 58 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccC--CCh----------------HHHH--------HHHHHHHHHHHHhhccHHH
Confidence 4567777777888888888887765221 000 0111 2445666677777777777
Q ss_pred HhhHHHHHH
Q 008082 366 LQSISEENE 374 (578)
Q Consensus 366 L~~L~ee~~ 374 (578)
|+.|..+|.
T Consensus 59 L~~LrkENr 67 (85)
T PF15188_consen 59 LKLLRKENR 67 (85)
T ss_pred HHHHHHhhh
Confidence 777776654
No 291
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.59 E-value=4.3e+02 Score=26.09 Aligned_cols=36 Identities=36% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANAN 212 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~ 212 (578)
.+..+..++......+..+...+..+..++.+++..
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444443333
No 292
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.20 E-value=6.1e+02 Score=27.73 Aligned_cols=46 Identities=9% Similarity=0.069 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 243 SLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 243 ~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE 306 (578)
--+.+|..|+.++..+..|. --........+..-++.++.+|...|
T Consensus 273 lHq~Ei~~LKqeLa~~EEK~------------------~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 273 LHQNEIYNLKQELASMEEKM------------------AYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHH------------------HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456666666666665442 11222244555566666666666656
No 293
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=35.91 E-value=6.4e+02 Score=27.86 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhHHHHHH
Q 008082 111 WQSELDAVQKQQSMDSAALGS 131 (578)
Q Consensus 111 ~~~ele~~r~~~~~~~~~L~~ 131 (578)
+..+|..+|+=|..-...+..
T Consensus 156 LRreLavLRQl~~~~~~~~~~ 176 (424)
T PF03915_consen 156 LRRELAVLRQLYSEFQSEVKE 176 (424)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655544444333
No 294
>PRK15396 murein lipoprotein; Provisional
Probab=35.89 E-value=2.4e+02 Score=23.56 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=13.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 179 EKLKNELSYCKESESQALEDVRKSQMQLETANA 211 (578)
Q Consensus 179 e~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~ 211 (578)
+.|..+++.+...+.++...+..+......++.
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333
No 295
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.40 E-value=2.6e+02 Score=31.75 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=8.7
Q ss_pred CcchhhcccCCCCCCCC
Q 008082 524 NGKFVERTGSLDGQYSP 540 (578)
Q Consensus 524 ~~~~~~~~~s~~~~~~~ 540 (578)
||-.-.--|-+++.|.+
T Consensus 558 n~d~e~~lgp~Eppy~S 574 (907)
T KOG2264|consen 558 NFDDEYLLGPLEPPYES 574 (907)
T ss_pred CCCcccccCCCCCCCCC
Confidence 44333445566665554
No 296
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.39 E-value=2.7e+02 Score=25.56 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008082 171 LTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYN 228 (578)
Q Consensus 171 l~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~ 228 (578)
+.-...++..++..+..+...+..++.--..+..+++.++..-..|..++..+....+
T Consensus 39 ~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 39 VEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555555666666666666666666555443333
No 297
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.34 E-value=4e+02 Score=25.38 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008082 221 IKATEAYNTLSLELELSK 238 (578)
Q Consensus 221 ~~l~~~~~~l~~eLe~~~ 238 (578)
..+....+.+..+++.++
T Consensus 76 ~~lr~~~e~L~~eie~l~ 93 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLR 93 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444433
No 298
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.05 E-value=4.3e+02 Score=25.63 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALD 303 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE 303 (578)
...+-.++..++.++..|+..|.
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544444
No 299
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.05 E-value=4.3e+02 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDA 304 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~ 304 (578)
+..+...+..+...+..--+.|..
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444544555555444444444443
No 300
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.87 E-value=1.6e+02 Score=22.92 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008082 234 LELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 234 Le~~~~e~~~Le~ei~kL~~ 253 (578)
++.++.++..+...|.+++.
T Consensus 16 i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 301
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.77 E-value=6.7e+02 Score=27.81 Aligned_cols=16 Identities=25% Similarity=-0.012 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhhh
Q 008082 246 ELVSKLQNDLLNSSNK 261 (578)
Q Consensus 246 ~ei~kL~~el~~~~~k 261 (578)
+.-..|.....-|.++
T Consensus 403 E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334444444445443
No 302
>PRK04406 hypothetical protein; Provisional
Probab=34.69 E-value=2.6e+02 Score=23.01 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008082 246 ELVSKL 251 (578)
Q Consensus 246 ~ei~kL 251 (578)
..+..|
T Consensus 46 ~ql~~L 51 (75)
T PRK04406 46 DQMKYV 51 (75)
T ss_pred HHHHHH
Confidence 333333
No 303
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.27 E-value=6.9e+02 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRYQEEYIQST 317 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~lqeE~~~~~ 317 (578)
+.+|...+..+...+..|....++...-+-.....++
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr 331 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLR 331 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6777777777777777777777766655554443333
No 304
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=34.09 E-value=2.5e+02 Score=22.60 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRS 218 (578)
Q Consensus 169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~ 218 (578)
.+++.+....+.|+.....+......|...-..+....+.|...++.+-.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444333
No 305
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.02 E-value=8.3e+02 Score=28.63 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 008082 28 SRVSELESQLAQLQEDLKKAK 48 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~ek 48 (578)
+.+-.++..+..|+-..+.++
T Consensus 62 s~~~~~~~~l~~Lqns~kr~e 82 (716)
T KOG4593|consen 62 SLLMQLEDELMQLQNSHKRAE 82 (716)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 556666665555555544444
No 306
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=33.94 E-value=8.5e+02 Score=28.72 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQL 298 (578)
Q Consensus 281 i~eL~~el~~le~EieeL 298 (578)
+..|...+..++.++..+
T Consensus 341 v~~l~~~~~~L~~~~~~l 358 (726)
T PRK09841 341 YRALLEKRQTLEQERKRL 358 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 307
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.75 E-value=6e+02 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008082 28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAE 66 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe 66 (578)
.++.+-..++..++.+|...+-.+......-.++..++.
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~ 46 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIE 46 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888777666666666666665553
No 308
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.11 E-value=3.6e+02 Score=25.10 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 193 SQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 193 s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
..+......+..+|......+..|+.++...+..+......|..++..++.+..++......
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555566666677777777777777777667666666666666666665555555543
No 309
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.06 E-value=5.5e+02 Score=28.67 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 008082 418 MSLTEQNGMLKMEIE 432 (578)
Q Consensus 418 q~~~~E~~~lk~~i~ 432 (578)
+.+..+|..|+.+.+
T Consensus 76 ~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 76 AKLISENEALKAENE 90 (472)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 310
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.06 E-value=2.9e+02 Score=23.04 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008082 288 LDLARNELRQLRSALDASETRYQEEYIQSTLQ 319 (578)
Q Consensus 288 l~~le~EieeL~s~LE~aE~~lqeE~~~~~~e 319 (578)
+..++..|-+|..+-...+..|.+|+..++.+
T Consensus 41 m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 41 MQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666665544444
No 311
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=32.11 E-value=5.5e+02 Score=26.01 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRYQEEY 313 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~lqeE~ 313 (578)
...+...+...+..|..|...+..++..|..-+
T Consensus 179 K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~AL 211 (239)
T PF05276_consen 179 KAKFNQQLEEQKEKVEELEAKVKQAKSRYSEAL 211 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777888888888888787776433
No 312
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=31.76 E-value=6.3e+02 Score=26.56 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 219 DGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 219 e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
.+.++.+++......++.++.++..|+..|...+..+
T Consensus 75 ~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~ 111 (301)
T PF06120_consen 75 NIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQL 111 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555554444433
No 313
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.73 E-value=5.6e+02 Score=26.08 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 008082 178 VEKLKNELSYCKESESQALEDVRKSQMQLETANAN--------------------------------------------- 212 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~--------------------------------------------- 212 (578)
++.++.++..+...+......+..++..|...+..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 213 LEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 213 le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
+--..+.....+....+|..++......+..|+.+|.+|+.+-..+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 314
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.72 E-value=6.7e+02 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHH
Q 008082 79 LEESQQQLLEITTSEDTRVEE 99 (578)
Q Consensus 79 Le~~~~~~~~~~e~ek~r~~E 99 (578)
.+-+++....+.+-+++|-..
T Consensus 165 ~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 165 AEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 315
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.04 E-value=1.2e+02 Score=32.70 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 008082 240 RVKSLEELVSKLQ 252 (578)
Q Consensus 240 e~~~Le~ei~kL~ 252 (578)
.+..+...+.+|.
T Consensus 173 ~i~~l~~kl~DlE 185 (370)
T PF02994_consen 173 RIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 316
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=30.65 E-value=3.6e+02 Score=23.96 Aligned_cols=59 Identities=29% Similarity=0.312 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008082 203 QMQLETANANLEMLRSDGIKAT----EAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNK 261 (578)
Q Consensus 203 ~~qLEea~~~le~l~~e~~~l~----~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k 261 (578)
..++..++..+..++.++..-+ .........++++...+..|+.-+..+++++.+.+.-
T Consensus 7 ~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpV 69 (112)
T PF07439_consen 7 HQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPV 69 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccch
Confidence 3444444444444444443222 2334445567888888888888888888888887653
No 317
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.34 E-value=3e+02 Score=22.39 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008082 165 QNLRIELTETLSLVEKL 181 (578)
Q Consensus 165 ~eL~~el~e~~~eie~l 181 (578)
.+|...+.-....|+.|
T Consensus 11 ~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 11 AELESRLAFQEITIEEL 27 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 318
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.16 E-value=7.4e+02 Score=26.88 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008082 289 DLARNELRQLRSALDASE 306 (578)
Q Consensus 289 ~~le~EieeL~s~LE~aE 306 (578)
..+...+..++..+..+.
T Consensus 218 ~~l~~~l~~~~~~~~~~~ 235 (444)
T TIGR03017 218 NELSAQLVAAQAQVMDAS 235 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444433333333
No 319
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.49 E-value=6.5e+02 Score=25.99 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008082 169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR 240 (578)
Q Consensus 169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e 240 (578)
.-+..+...+..++..+..+....+.+..+++.-..+|+.+++.+.+|.+-.=...++|+.+..+|..+-..
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 444556668888888899999999999999999999999999999999988877788888888887776553
No 320
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.43 E-value=2e+02 Score=32.03 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008082 239 ARVKSLEELVSKLQNDL 255 (578)
Q Consensus 239 ~e~~~Le~ei~kL~~el 255 (578)
..++.|+.++..|+.++
T Consensus 104 ~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 104 RRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444444
No 321
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=29.10 E-value=35 Score=31.17 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=18.2
Q ss_pred ccCCCCCCCCCC-CCCCCCCccc
Q 008082 531 TGSLDGQYSPMI-GNTGSPYCEE 552 (578)
Q Consensus 531 ~~s~~~~~~~~~-~~~~~~~~~~ 552 (578)
-||||++--++| |.+|-|.|.|
T Consensus 43 VGSldK~dpnVGtGlVGAPACGD 65 (157)
T KOG3361|consen 43 VGSLDKNDPNVGTGLVGAPACGD 65 (157)
T ss_pred cCccCCCCCCcccccccCccccc
Confidence 599999776644 7799999987
No 322
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=29.07 E-value=1.8e+02 Score=31.45 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+.+++..+++.+..+...++.+...+..++..+..+...+.++.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666677777777777666654
No 323
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.95 E-value=6.9e+02 Score=26.15 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHH
Q 008082 110 AWQSELDAVQKQ 121 (578)
Q Consensus 110 ~~~~ele~~r~~ 121 (578)
.|..|++++--|
T Consensus 202 eW~lEvERVlPQ 213 (384)
T KOG0972|consen 202 EWKLEVERVLPQ 213 (384)
T ss_pred HHHHHHHHhhhh
Confidence 377787777665
No 324
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=28.25 E-value=7.6e+02 Score=26.36 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 008082 122 QSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRK 201 (578)
Q Consensus 122 ~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~e 201 (578)
....+--+.+.-+=|++++..++.-+.--..--.+...+-.++--.+.=+..+..+...|-.-+..++....+++..+..
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 202 SQMQLETANANLEMLRSDGIKATEAYNTLSLE-----------LELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 202 l~~qLEea~~~le~l~~e~~~l~~~~~~l~~e-----------Le~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
+..+..+...+...|..++.+...-...|..+ ++.-+.-|..|+..|.+|.-++..+
T Consensus 153 l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 153 LQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 325
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=27.76 E-value=8.6e+02 Score=26.84 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 187 YCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 187 e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
..+....++......+-..+++++..++.|++++.. +-..-.-.+|+.+..++..+..++.+++.
T Consensus 207 y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~--RgVRp~~~qLe~v~kdi~~a~keL~~m~~ 271 (426)
T smart00806 207 YVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQ--RGVRPSKKQLETVQKELETARKELKKMEE 271 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666677777888888888888887633 22222223334444444444444444444
No 326
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.69 E-value=1.1e+03 Score=28.12 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHHH
Q 008082 30 VSELESQLAQLQEDL 44 (578)
Q Consensus 30 ~~eLe~ql~~lqeeL 44 (578)
+.+|..++.++..+.
T Consensus 224 ~~~ln~~l~~l~~~~ 238 (771)
T TIGR01069 224 IVKLNNKLAQLKNEE 238 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 327
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.68 E-value=7.5e+02 Score=26.16 Aligned_cols=60 Identities=18% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 155 KHAESAYAEMQNLRIELTETLSLVEKLKNELS--YCKESESQALEDVRKSQMQLETANANLE 214 (578)
Q Consensus 155 k~~~~le~el~eL~~el~e~~~eie~l~~~l~--e~e~~~s~l~~~~~el~~qLEea~~~le 214 (578)
....-++.++..++.++..++..+.+.+.+.. +.+.........+..+..++..++..+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777788888887777777777643 2222222233334444444444444433
No 328
>PRK10869 recombination and repair protein; Provisional
Probab=26.77 E-value=9.9e+02 Score=27.23 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHH
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNE 294 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~E 294 (578)
.+...+..+-..|..+..+++.+..........+.-++-++.++..-+ ....+..+|..+...+..
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~-------------l~~gE~eeL~~e~~~L~n- 219 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFA-------------PQPGEFEQIDEEYKRLAN- 219 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC-------------CCCCcHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHH
Q 008082 295 LRQLRSALDASETRYQE-EYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEEN 373 (578)
Q Consensus 295 ieeL~s~LE~aE~~lqe-E~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~ 373 (578)
.+.+...+..+-..|.. +.......+..+...+..+ +.++-...++...+......++++...+...-..+-.=-...
T Consensus 220 ~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l 298 (553)
T PRK10869 220 SGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRL 298 (553)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q ss_pred HhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 008082 374 EGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAAR 453 (578)
Q Consensus 374 ~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~ 453 (578)
..++.-+ ..+.+.++|.-..+.++-....+...+|+.+ ......+..++.+......++.......-
T Consensus 299 ~~ie~Rl---------~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L----~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 299 AELEQRL---------SKQISLARKHHVSPEELPQHHQQLLEEQQQL----DDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-hhHHHHHHH
Q 008082 454 VAEREALMKV-GFLTEEADK 472 (578)
Q Consensus 454 ~~~~~~~~kl-~~l~~ele~ 472 (578)
..|+.+...+ ..+..+|.+
T Consensus 366 ~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 366 QSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 329
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.54 E-value=3.1e+02 Score=21.34 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 450 EAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAE 497 (578)
Q Consensus 450 e~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaE 497 (578)
.+|+..+..-...+..|+..+.........|...+.........|..+
T Consensus 15 ~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466666766677777778888777777777777776666666555544
No 330
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=26.23 E-value=5.1e+02 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
..++.|-.=|......+..+...+..|...+
T Consensus 84 ~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 84 SELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 3344444434444444444444444444333
No 331
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.14 E-value=9.1e+02 Score=26.58 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 008082 292 RNELRQLRSALDASE 306 (578)
Q Consensus 292 e~EieeL~s~LE~aE 306 (578)
..++..+.+.+..++
T Consensus 242 ~~~i~~l~~~i~~~~ 256 (457)
T TIGR01000 242 QQQIDQLQKSIASYQ 256 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 332
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=26.14 E-value=8.1e+02 Score=26.02 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 193 SQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSK 250 (578)
Q Consensus 193 s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~k 250 (578)
.-+.-.+.+...+|..+.++.+.+.+++..+++.+.-|...+.+++..++.-...|.+
T Consensus 150 DtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 150 DTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666777777777777777777777777777777666655555
No 333
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.82 E-value=7.4e+02 Score=25.44 Aligned_cols=173 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh--HhHHHHHHHHHHH
Q 008082 126 SAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLS----LVEKLKNELS--YCKESESQALEDV 199 (578)
Q Consensus 126 ~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~----eie~l~~~l~--e~e~~~s~l~~~~ 199 (578)
+..+......-.++++|+..+..-...-..+...-+-+.+++...+..+.. .+-.++.-+= ..-....++...+
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~el 186 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGEL 186 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 008082 200 RKSQMQLETANANLE-----MLRSDGIKATEAYNTLSLELELSKA-----RVKSLEELVSKLQNDLLNSSNKLAESMGDV 269 (578)
Q Consensus 200 ~el~~qLEea~~~le-----~l~~e~~~l~~~~~~l~~eLe~~~~-----e~~~Le~ei~kL~~el~~~~~k~~~~e~~~ 269 (578)
+.+...|++++..|. --+.-+..|...|..|..+-+++-. .|..|+-++.=-++.-.+++...+
T Consensus 187 e~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~------ 260 (330)
T KOG2991|consen 187 EQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQE------ 260 (330)
T ss_pred HHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHH------
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 270 HLSQKNGENEEIDKLKGELDLARNELRQLRSALDASETRYQ 310 (578)
Q Consensus 270 ~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE~~lq 310 (578)
+...=+.+|...+..+.+.|=-|+..|...+.+|+
T Consensus 261 ------eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 261 ------ELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred ------HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
No 334
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=25.36 E-value=2.6e+02 Score=23.71 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 008082 397 NKLEAEVVEFKASILDKETELMSLTEQNG 425 (578)
Q Consensus 397 kkle~e~~eLk~~L~e~E~~lq~~~~E~~ 425 (578)
+.++.+...+...+..-|.+|..++.||.
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 34557888888888888888888887765
No 335
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.83 E-value=77 Score=28.28 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANAN 212 (578)
Q Consensus 167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~ 212 (578)
+...+..+..++..|+.++..+...+..+......+...|-.++..
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~ 75 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQET 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhh
Confidence 3333444444444444444444444444444444444444333333
No 336
>PRK10698 phage shock protein PspA; Provisional
Probab=24.62 E-value=7e+02 Score=24.79 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKA 223 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l 223 (578)
+......++.++..+..|...+.++
T Consensus 108 ~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 108 VTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 337
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.07 E-value=4.5e+02 Score=22.32 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 130 GSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTE 173 (578)
Q Consensus 130 ~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e 173 (578)
.+.+..|...=..|+.++..+.........++.+++.+......
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~r 50 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSR 50 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHH
Confidence 33333333333444455555555555444444444444444333
No 338
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.06 E-value=6.2e+02 Score=23.98 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=15.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 178 VEKLKNELSYCKESESQALEDVRKSQMQLETANANLE 214 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le 214 (578)
..+++.++.-......++...-..+...|..+..+++
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 339
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=23.90 E-value=5.7e+02 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 228 NTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 228 ~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
..+..+++.+--=+..+...+.+....+..++
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 34444444444444555555555555555553
No 340
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.61 E-value=5e+02 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=15.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 184 ELSYCKESESQALEDVRKSQMQLETANANLEMLR 217 (578)
Q Consensus 184 ~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~ 217 (578)
++..+...+..+...+..+..++.+....++++.
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~ 44 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444445555554444443
No 341
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=23.58 E-value=1e+03 Score=26.19 Aligned_cols=125 Identities=13% Similarity=0.203 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhHHHHHHH----
Q 008082 31 SELESQLAQLQEDLK-KAKEQLNASDSWKRRAQQEAEEAKKQLSAMSAR---LEESQQQLLEITTSEDTRVEELRQ---- 102 (578)
Q Consensus 31 ~eLe~ql~~lqeeL~-~eke~~~~~E~~k~~~~~ELe~~k~~~~el~~~---Le~~~~~~~~~~e~ek~r~~El~k---- 102 (578)
.+...+-.-.|.+-. +..+.+.-.-.||..+..+|+++..+.+.|... |+-+...+..=..+...-+.-..+
T Consensus 58 ~e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~ 137 (421)
T KOG2685|consen 58 NETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGI 137 (421)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccc
Confidence 444444455554442 334778888999999999999998888888754 332222211111111111111100
Q ss_pred --hhHhHhHhHHHHH---HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 103 --LSQDRDKAWQSEL---DAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTK 155 (578)
Q Consensus 103 --l~~~~e~~~~~el---e~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k 155 (578)
..-..|..+..|+ ...++.+..-.....+++...+..+..|+.=..-|..+..
T Consensus 138 dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ 195 (421)
T KOG2685|consen 138 DLVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYE 195 (421)
T ss_pred hhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhe
Confidence 1111122233333 4444455555555666666667777777654444444433
No 342
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.48 E-value=3.2e+02 Score=27.62 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 179 EKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLE 245 (578)
Q Consensus 179 e~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le 245 (578)
+++..++-|++..+..++.....+..-|+.+. . -.++.+++.++..++.+++.++.+++.|.
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~----~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-T----VEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444444444333 1 11234444555555555555444444433
No 343
>PRK10698 phage shock protein PspA; Provisional
Probab=23.31 E-value=7.5e+02 Score=24.61 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 008082 400 EAEVVEFKASI 410 (578)
Q Consensus 400 e~e~~eLk~~L 410 (578)
+.++..|++.+
T Consensus 207 e~ELa~LK~~~ 217 (222)
T PRK10698 207 SEQLAALKAKM 217 (222)
T ss_pred HHHHHHHHHHh
Confidence 34445555443
No 344
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.31 E-value=5.2e+02 Score=26.40 Aligned_cols=25 Identities=12% Similarity=-0.114 Sum_probs=9.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082 215 MLRSDGIKATEAYNTLSLELELSKA 239 (578)
Q Consensus 215 ~l~~e~~~l~~~~~~l~~eLe~~~~ 239 (578)
.|..++..|+..++.+..+|+++..
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333333334444444444333
No 345
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.26 E-value=7.3e+02 Score=24.47 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHH
Q 008082 28 SRVSELESQLAQLQEDLKKAK-EQLNASDSWKRRAQQEA 65 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~ek-e~~~~~E~~k~~~~~EL 65 (578)
..+..|..++..-..+....+ ...+.+......+...|
T Consensus 18 ~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qL 56 (206)
T PF14988_consen 18 KKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQL 56 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444444 44444444444444444
No 346
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=1.3e+03 Score=27.22 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=9.7
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHh
Q 008082 335 SQREADLETELKNVKAQIEELRANL 359 (578)
Q Consensus 335 ~qr~~el~~el~~~~~eleel~~~l 359 (578)
+..-+.++.+..........++...
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek 505 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEK 505 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333333333333333333
No 347
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.21 E-value=4.6e+02 Score=25.23 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008082 233 ELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 233 eLe~~~~e~~~Le~ei~kL~~e 254 (578)
-|......+..|+.+|..++..
T Consensus 157 ~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 157 ILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHTT--HHHHHHHHHHHTGG
T ss_pred HHhcccCCHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 348
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=22.04 E-value=5.7e+02 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 008082 36 QLAQLQEDLKKAK 48 (578)
Q Consensus 36 ql~~lqeeL~~ek 48 (578)
+|..|+-+|-+.|
T Consensus 8 rIkdLeselsk~K 20 (111)
T PF12001_consen 8 RIKDLESELSKMK 20 (111)
T ss_pred HHHHHHHHHHHhH
Confidence 3444444443333
No 349
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.94 E-value=3.7e+02 Score=30.06 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008082 232 LELELSKARVKSLEELVSK 250 (578)
Q Consensus 232 ~eLe~~~~e~~~Le~ei~k 250 (578)
..|+.+..++..|+.++..
T Consensus 104 ~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 104 RRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444444445445543
No 350
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.05 E-value=9.3e+02 Score=24.89 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+.....++....+++.+..++...+..+.++...+.+.+..+..|+.+-.++...+...+
T Consensus 195 ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 195 KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555554444444444443
No 351
>PHA01750 hypothetical protein
Probab=20.84 E-value=4.5e+02 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQM 204 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~ 204 (578)
++.+|+.++++.......+++.+.++..
T Consensus 43 ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555555555444444444444433
No 352
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=20.69 E-value=1.4e+03 Score=26.97 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=5.8
Q ss_pred HHhHhhhhc
Q 008082 567 KKFGVLWKK 575 (578)
Q Consensus 567 ~~~~~l~~k 575 (578)
--||.+++|
T Consensus 524 ssi~r~f~k 532 (916)
T KOG0249|consen 524 SSIGRLFGK 532 (916)
T ss_pred hHHHHHHhh
Confidence 347777755
No 353
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.37 E-value=7.3e+02 Score=23.81 Aligned_cols=30 Identities=23% Similarity=0.125 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082 210 NANLEMLRSDGIKATEAYNTLSLELELSKA 239 (578)
Q Consensus 210 ~~~le~l~~e~~~l~~~~~~l~~eLe~~~~ 239 (578)
...|..|...+.........+..+|...+.
T Consensus 109 ~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~ 138 (184)
T PF05791_consen 109 KEIIEDLQDQIQKNQDKVQALINELNDFKD 138 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 354
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.18 E-value=1e+03 Score=24.98 Aligned_cols=68 Identities=12% Similarity=0.249 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 008082 219 DGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQL 298 (578)
Q Consensus 219 e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL 298 (578)
.++.++..|..+..-+..--+.+...-.++..++.++..-+.+. + -+..+..+...+..++.+...+
T Consensus 288 ~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~m-s------------DGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 288 TLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKM-S------------DGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c------------CCchHHHHHHHHHHHHHHHHhh
Confidence 33334444444433333333334444445555555555543322 1 1123555555666666655555
Q ss_pred H
Q 008082 299 R 299 (578)
Q Consensus 299 ~ 299 (578)
.
T Consensus 355 n 355 (384)
T KOG0972|consen 355 N 355 (384)
T ss_pred h
Confidence 3
Done!