Query 008082
Match_columns 578
No_of_seqs 229 out of 426
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.6 1.3E-07 4.4E-12 113.8 11.4 38 391-428 1057-1094(1184)
2 2v71_A Nuclear distribution pr 97.4 0.017 5.6E-07 54.6 20.1 107 189-306 9-115 (189)
3 3na7_A HP0958; flagellar bioge 97.4 0.039 1.3E-06 54.8 23.6 67 192-258 20-86 (256)
4 3na7_A HP0958; flagellar bioge 97.3 0.079 2.7E-06 52.6 24.8 29 226-254 91-119 (256)
5 2v71_A Nuclear distribution pr 97.1 0.11 3.8E-06 49.0 21.7 94 201-313 46-143 (189)
6 3o0z_A RHO-associated protein 95.8 1.2 4E-05 41.1 22.5 108 137-244 30-137 (168)
7 3vkg_A Dynein heavy chain, cyt 95.5 4.3 0.00015 53.2 29.5 85 156-240 2022-2106(3245)
8 2ocy_A RAB guanine nucleotide 95.1 1.8 6.3E-05 39.3 18.5 49 384-432 98-146 (154)
9 3vkg_A Dynein heavy chain, cyt 94.7 11 0.00038 49.5 29.7 33 113-145 1913-1945(3245)
10 3ol1_A Vimentin; structural ge 94.4 1.5 5.2E-05 38.2 15.1 87 175-261 19-105 (119)
11 2fxo_A Myosin heavy chain, car 94.4 2.5 8.6E-05 37.2 19.4 85 130-221 16-100 (129)
12 3o0z_A RHO-associated protein 94.1 3.5 0.00012 37.9 22.7 26 281-306 92-117 (168)
13 3ol1_A Vimentin; structural ge 93.2 2.7 9.4E-05 36.5 14.4 32 221-255 86-117 (119)
14 2dfs_A Myosin-5A; myosin-V, in 93.2 2.5 8.4E-05 50.3 18.6 21 286-306 1023-1043(1080)
15 3swk_A Vimentin; cytoskeleton, 91.6 2 6.7E-05 35.2 10.8 81 178-258 2-82 (86)
16 2dfs_A Myosin-5A; myosin-V, in 91.2 6.8 0.00023 46.5 19.1 20 194-213 925-944 (1080)
17 3u1c_A Tropomyosin alpha-1 cha 90.9 6.5 0.00022 33.1 15.0 17 173-189 41-57 (101)
18 2v4h_A NF-kappa-B essential mo 90.9 5.6 0.00019 33.8 12.9 78 178-255 26-106 (110)
19 3hnw_A Uncharacterized protein 90.3 2.6 8.8E-05 37.7 11.1 58 199-256 77-134 (138)
20 3tnu_B Keratin, type II cytosk 90.2 6.7 0.00023 34.4 13.7 30 164-193 38-67 (129)
21 3tnu_A Keratin, type I cytoske 89.6 5.7 0.0002 35.0 12.8 32 163-194 39-70 (131)
22 3swk_A Vimentin; cytoskeleton, 88.5 6.5 0.00022 32.1 11.3 10 137-146 3-12 (86)
23 3hnw_A Uncharacterized protein 88.2 6.9 0.00024 34.9 12.3 29 129-157 37-67 (138)
24 2eqb_B RAB guanine nucleotide 87.6 11 0.00039 31.3 13.8 53 115-167 7-59 (97)
25 3u59_A Tropomyosin beta chain; 87.5 12 0.0004 31.4 15.7 7 246-252 86-92 (101)
26 2efr_A General control protein 87.5 16 0.00056 33.1 24.3 61 198-258 78-138 (155)
27 3tnu_A Keratin, type I cytoske 86.7 16 0.00054 32.1 13.7 55 199-253 19-73 (131)
28 2jee_A YIIU; FTSZ, septum, coi 86.6 8.1 0.00028 31.2 10.5 53 170-222 14-66 (81)
29 2eqb_B RAB guanine nucleotide 86.3 10 0.00035 31.6 11.3 30 385-414 67-96 (97)
30 2ocy_A RAB guanine nucleotide 86.2 19 0.00066 32.6 19.8 47 207-253 97-143 (154)
31 3tnu_B Keratin, type II cytosk 85.9 17 0.00058 31.7 14.2 40 213-252 31-70 (129)
32 2e7s_A RAB guanine nucleotide 85.9 1 3.5E-05 40.0 5.3 48 384-431 86-133 (135)
33 1ic2_A Tropomyosin alpha chain 85.8 8.8 0.0003 30.8 10.7 52 186-237 9-60 (81)
34 2v4h_A NF-kappa-B essential mo 85.7 13 0.00044 31.6 11.8 77 163-239 25-104 (110)
35 2efr_A General control protein 85.1 22 0.00075 32.3 24.3 9 244-252 103-111 (155)
36 2e7s_A RAB guanine nucleotide 85.0 2.9 9.9E-05 37.1 7.8 86 129-220 41-126 (135)
37 3ghg_A Fibrinogen alpha chain; 84.9 7.4 0.00025 41.8 12.2 22 134-155 64-85 (562)
38 3oja_B Anopheles plasmodium-re 84.0 20 0.00067 39.1 16.1 23 281-303 458-480 (597)
39 2jee_A YIIU; FTSZ, septum, coi 82.3 18 0.00062 29.1 11.3 62 199-260 8-69 (81)
40 3cve_A Homer protein homolog 1 82.0 15 0.00053 28.9 10.1 63 180-242 4-66 (72)
41 3cvf_A Homer-3, homer protein 81.9 9 0.00031 30.8 8.8 66 177-242 7-72 (79)
42 3oja_B Anopheles plasmodium-re 81.8 12 0.00041 40.8 13.2 19 233-251 559-577 (597)
43 3i00_A HIP-I, huntingtin-inter 81.2 9.1 0.00031 33.3 9.4 96 132-230 20-118 (120)
44 1go4_E MAD1 (mitotic arrest de 77.6 13 0.00046 31.1 8.9 80 225-304 12-93 (100)
45 3jsv_C NF-kappa-B essential mo 77.5 24 0.00083 29.1 10.2 79 178-256 4-85 (94)
46 3ghg_A Fibrinogen alpha chain; 76.9 37 0.0013 36.4 14.2 34 122-155 62-95 (562)
47 2v66_B Nuclear distribution pr 76.6 35 0.0012 29.1 15.5 24 225-248 77-100 (111)
48 3bas_A Myosin heavy chain, str 76.4 30 0.001 28.2 12.2 22 184-205 36-57 (89)
49 2v66_B Nuclear distribution pr 74.5 40 0.0014 28.8 16.5 29 405-433 74-102 (111)
50 1x79_B RAB GTPase binding effe 73.9 41 0.0014 28.7 12.6 72 181-262 36-107 (112)
51 2b9c_A Striated-muscle alpha t 72.5 53 0.0018 29.4 13.5 44 181-224 64-107 (147)
52 1l8d_A DNA double-strand break 72.4 42 0.0014 28.1 12.8 22 196-217 23-44 (112)
53 1ic2_A Tropomyosin alpha chain 71.3 37 0.0013 27.0 12.2 37 171-207 36-72 (81)
54 1x79_B RAB GTPase binding effe 70.1 51 0.0017 28.1 11.5 15 196-210 37-51 (112)
55 2b9c_A Striated-muscle alpha t 65.3 76 0.0026 28.3 16.3 35 224-258 86-120 (147)
56 3s4r_A Vimentin; alpha-helix, 65.1 57 0.0019 26.8 11.5 18 164-181 11-28 (93)
57 3jsv_C NF-kappa-B essential mo 64.0 49 0.0017 27.3 9.2 80 167-253 7-89 (94)
58 3qh9_A Liprin-beta-2; coiled-c 63.4 56 0.0019 26.1 10.4 58 128-185 20-77 (81)
59 3q8t_A Beclin-1; autophagy, AT 62.1 66 0.0023 26.6 14.6 19 227-245 62-80 (96)
60 1x8y_A Lamin A/C; structural p 61.7 55 0.0019 26.4 9.2 44 177-223 4-47 (86)
61 1wt6_A Myotonin-protein kinase 61.7 61 0.0021 26.0 9.4 44 465-508 28-71 (81)
62 2w83_C C-JUN-amino-terminal ki 60.0 62 0.0021 25.6 9.7 37 176-212 9-45 (77)
63 2i1j_A Moesin; FERM, coiled-co 59.5 14 0.00049 40.6 7.0 52 325-376 331-382 (575)
64 4h22_A Leucine-rich repeat fli 57.3 85 0.0029 26.3 11.0 59 197-255 23-81 (103)
65 1gk4_A Vimentin; intermediate 57.3 73 0.0025 25.5 11.1 26 288-313 3-28 (84)
66 3mq9_A Bone marrow stromal ant 57.0 1.7E+02 0.0057 30.6 14.8 19 395-413 444-462 (471)
67 1x8y_A Lamin A/C; structural p 54.7 51 0.0017 26.6 7.9 25 288-312 5-29 (86)
68 3qh9_A Liprin-beta-2; coiled-c 53.6 85 0.0029 25.1 10.3 41 173-213 23-63 (81)
69 3tul_A Cell invasion protein S 53.5 1.2E+02 0.0042 27.0 13.5 105 186-306 23-127 (158)
70 1l8d_A DNA double-strand break 51.7 1E+02 0.0035 25.6 12.3 22 234-255 80-101 (112)
71 3i00_A HIP-I, huntingtin-inter 50.4 1.2E+02 0.0039 26.2 9.8 16 289-304 18-33 (120)
72 3a7p_A Autophagy protein 16; c 49.5 1.5E+02 0.005 26.7 11.9 17 223-239 101-117 (152)
73 1go4_E MAD1 (mitotic arrest de 48.7 13 0.00046 31.1 3.4 32 177-208 13-44 (100)
74 3htk_A Structural maintenance 46.5 85 0.0029 23.1 8.4 8 245-252 46-53 (60)
75 3ryc_E Stathmin-4; alpha-tubul 45.7 1.6E+02 0.0056 26.1 14.5 41 9-56 24-64 (143)
76 3bas_A Myosin heavy chain, str 45.5 1.2E+02 0.0041 24.5 12.0 40 174-213 47-86 (89)
77 2i1j_A Moesin; FERM, coiled-co 45.1 35 0.0012 37.4 7.2 17 411-427 533-549 (575)
78 2zqm_A Prefoldin beta subunit 44.4 1.4E+02 0.0047 24.8 11.4 35 224-258 69-103 (117)
79 2w6a_A ARF GTPase-activating p 43.7 90 0.0031 23.4 6.8 48 351-407 14-61 (63)
80 1deq_A Fibrinogen (alpha chain 42.7 3E+02 0.01 28.3 17.0 82 59-144 63-144 (390)
81 3s84_A Apolipoprotein A-IV; fo 41.7 2.6E+02 0.009 27.3 27.4 221 207-470 18-247 (273)
82 2lw1_A ABC transporter ATP-bin 41.0 1.4E+02 0.0048 24.0 9.9 61 232-305 22-82 (89)
83 2q6q_A Spindle POLE BODY compo 40.5 1.2E+02 0.0043 23.3 7.4 51 169-219 10-60 (74)
84 4h22_A Leucine-rich repeat fli 39.4 1.7E+02 0.0058 24.5 11.8 49 176-224 30-78 (103)
85 1wt6_A Myotonin-protein kinase 39.0 1.5E+02 0.0051 23.7 9.3 38 221-258 34-71 (81)
86 2no2_A HIP-I, huntingtin-inter 39.0 1.7E+02 0.0059 24.5 15.9 42 162-203 54-95 (107)
87 1fxk_A Prefoldin; archaeal pro 38.3 1.6E+02 0.0055 24.0 11.3 36 224-259 64-99 (107)
88 2xnx_M M protein, M1-BC1; cell 38.1 2.1E+02 0.0074 25.3 10.0 63 181-243 71-133 (146)
89 2i7u_A Four-alpha-helix bundle 37.6 22 0.00076 25.7 2.6 19 505-523 12-30 (62)
90 1m1j_B Fibrinogen beta chain; 36.8 4.1E+02 0.014 28.2 14.3 34 180-213 125-158 (464)
91 2w83_C C-JUN-amino-terminal ki 36.2 1.6E+02 0.0055 23.3 9.7 15 183-197 9-23 (77)
92 3mq9_A Bone marrow stromal ant 34.9 4E+02 0.014 27.6 16.0 14 242-255 446-459 (471)
93 1m1j_B Fibrinogen beta chain; 34.1 4.5E+02 0.015 27.9 18.2 12 237-248 180-191 (464)
94 3trt_A Vimentin; cytoskeleton, 33.8 1.6E+02 0.0056 22.7 10.0 17 240-256 57-73 (77)
95 3trt_A Vimentin; cytoskeleton, 33.5 1.7E+02 0.0057 22.7 11.0 9 137-145 12-20 (77)
96 2oqq_A Transcription factor HY 32.4 1.2E+02 0.0041 21.2 5.5 33 399-431 8-40 (42)
97 3iv1_A Tumor susceptibility ge 31.5 2E+02 0.0067 22.9 9.7 22 197-218 18-39 (78)
98 4emc_A Monopolin complex subun 31.0 2.9E+02 0.0099 25.6 9.7 44 184-227 14-57 (190)
99 1gk4_A Vimentin; intermediate 30.8 2E+02 0.0069 22.8 11.5 14 179-192 4-17 (84)
100 3efg_A Protein SLYX homolog; x 30.3 1.5E+02 0.0051 23.4 6.8 45 178-222 16-60 (78)
101 3iv1_A Tumor susceptibility ge 30.2 2.1E+02 0.0071 22.8 10.0 58 167-224 16-73 (78)
102 3cvf_A Homer-3, homer protein 30.1 2.1E+02 0.0071 22.8 9.7 45 210-254 12-56 (79)
103 2xnx_M M protein, M1-BC1; cell 28.8 68 0.0023 28.5 4.9 52 448-499 74-125 (146)
104 3tul_A Cell invasion protein S 27.7 3.3E+02 0.011 24.2 12.2 64 109-172 30-93 (158)
105 2yy0_A C-MYC-binding protein; 26.8 1E+02 0.0035 22.6 4.8 7 181-187 24-30 (53)
106 1gd2_E Transcription factor PA 26.8 2E+02 0.0069 22.3 6.8 38 400-437 28-65 (70)
107 3oja_A Leucine-rich immune mol 26.3 5.6E+02 0.019 26.5 16.3 13 243-255 453-465 (487)
108 3mov_A Lamin-B1; LMNB1, B-type 25.9 2E+02 0.007 23.5 7.1 19 292-310 18-36 (95)
109 3nmd_A CGMP dependent protein 25.8 2.4E+02 0.0082 22.0 7.5 9 247-255 55-63 (72)
110 3s9g_A Protein hexim1; cyclin 25.6 2.9E+02 0.0098 22.9 8.7 41 467-507 43-83 (104)
111 4gkw_A Spindle assembly abnorm 24.9 3.4E+02 0.012 23.6 21.0 135 335-486 10-144 (167)
112 3c9i_A Tail needle protein GP2 23.4 4.7E+02 0.016 24.6 10.8 74 186-259 80-153 (242)
113 3m91_A Proteasome-associated A 22.8 2.2E+02 0.0076 20.6 6.5 11 212-222 17-27 (51)
114 2pms_C Pneumococcal surface pr 22.6 3.8E+02 0.013 23.2 10.3 23 236-258 65-87 (125)
115 2dgc_A Protein (GCN4); basic d 22.4 2.3E+02 0.0077 21.4 6.2 41 144-184 19-59 (63)
116 1m1j_A Fibrinogen alpha subuni 21.6 7.3E+02 0.025 26.2 13.2 89 136-228 67-156 (491)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.58 E-value=1.3e-07 Score=113.77 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 008082 391 KLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLK 428 (578)
Q Consensus 391 El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk 428 (578)
++...++.++.++..++..+.+.+..+..+..+...+.
T Consensus 1057 ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le 1094 (1184)
T 1i84_S 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094 (1184)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555444444444433333333
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.44 E-value=0.017 Score=54.59 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 008082 189 KESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGD 268 (578)
Q Consensus 189 e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~ 268 (578)
+..+.-|...+..+..++..++.++......-..|+. .+..+|+.+...++.|...+..|..++..|+.|+..
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~---- 81 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH---- 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3445555555555555555555555544444333332 233355666666677777777777777777766531
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 269 VHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 269 ~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE 306 (578)
...+....+..|+.++..+......+...|.+.|
T Consensus 82 ----~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 82 ----QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222244444444444444444444444333
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.40 E-value=0.039 Score=54.80 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 192 ESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 192 ~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
+..+......+...+.++...+..+.+.+..+...+..+..++.....++..+...+.+.+..+..+
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333333333333444444444444444444444444444444444444444444444444444433
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.32 E-value=0.079 Score=52.57 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 226 AYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 226 ~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
.|..+..+++....++..++..|..+...
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.11 E-value=0.11 Score=48.98 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhcccccccccccc
Q 008082 201 KSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKAR----VKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNG 276 (578)
Q Consensus 201 el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e----~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e 276 (578)
++..+|+.+...+..|...+..+...+..+...+..+..+ +..|+.+|..+......+..
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~---------------- 109 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK---------------- 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3455555666666666666666666666666555555544 55666666666655544422
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 277 ENEEIDKLKGELDLARNELRQLRSALDASETRYQEEY 313 (578)
Q Consensus 277 ~~eei~eL~~el~~le~EieeL~s~LE~aE~~lqeE~ 313 (578)
.|.+|+-.-+.++.....+.+.+++.+++|+..+
T Consensus 110 ---~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 110 ---YVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2666666667777777777788888887777554
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.78 E-value=1.2 Score=41.05 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 137 QRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEML 216 (578)
Q Consensus 137 ~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l 216 (578)
.++|-+.-.+..+.......+..+.+.+..|....+.+..++-.|..++..-.....+....+.+++.++..+..++..+
T Consensus 30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444445555555555555555666666666666666666666666666666666555555555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 217 RSDGIKATEAYNTLSLELELSKARVKSL 244 (578)
Q Consensus 217 ~~e~~~l~~~~~~l~~eLe~~~~e~~~L 244 (578)
.....++......+...+..+..+..++
T Consensus 110 k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 110 KHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555444444444444444444333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.50 E-value=4.3 Score=53.24 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008082 156 HAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELE 235 (578)
Q Consensus 156 ~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe 235 (578)
....+...+..++.+|.++...|..++.++..+-.....++..++.++..|+.|.+-+..|..+...|......+..++.
T Consensus 2022 ~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2022 AANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 34456667777778888888888888888888888888899999999999999999999999999999888888887776
Q ss_pred HHHHH
Q 008082 236 LSKAR 240 (578)
Q Consensus 236 ~~~~e 240 (578)
.+-..
T Consensus 2102 ~L~GD 2106 (3245)
T 3vkg_A 2102 TVVGD 2106 (3245)
T ss_dssp HHHHH
T ss_pred hccHH
Confidence 65543
No 8
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.14 E-value=1.8 Score=39.27 Aligned_cols=49 Identities=24% Similarity=0.154 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082 384 ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEIE 432 (578)
Q Consensus 384 ~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~ 432 (578)
.+|+.+....+..-.++..+..|+.++.|++.-|.....+...|+.-+.
T Consensus 98 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 98 EANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777777778888888999999999999998888888876554
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.66 E-value=11 Score=49.51 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 008082 113 SELDAVQKQQSMDSAALGSAMNEIQRLKFQLEK 145 (578)
Q Consensus 113 ~ele~~r~~~~~~~~~L~~~~~el~klr~qle~ 145 (578)
.++...+..+..-+.-|.++..+|..++.+|..
T Consensus 1913 ~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~ 1945 (3245)
T 3vkg_A 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ 1945 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666653
No 10
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.45 E-value=1.5 Score=38.16 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 175 LSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 175 ~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
...|.+|+.++..+....+++...+..++..+++.+...+..-.....++..+..+...++..--....|+..|..|..+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666655444455566666666666666555556677777777777
Q ss_pred HHhhhhh
Q 008082 255 LLNSSNK 261 (578)
Q Consensus 255 l~~~~~k 261 (578)
|.=++.-
T Consensus 99 l~FLKk~ 105 (119)
T 3ol1_A 99 IAFLKKL 105 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.36 E-value=2.5 Score=37.21 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008082 130 GSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETA 209 (578)
Q Consensus 130 ~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea 209 (578)
...-.++.+++..+...- +.+..++.....+..+...+...+..-+..+.+++....++.....++...|.++
T Consensus 16 ~~~~eel~~lke~l~k~e-------~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSE-------ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555554333 3333344444444444444444444445555555555555555555555555555
Q ss_pred HHHHHHHHhhhH
Q 008082 210 NANLEMLRSDGI 221 (578)
Q Consensus 210 ~~~le~l~~e~~ 221 (578)
...++.......
T Consensus 89 ~~rleeeee~~~ 100 (129)
T 2fxo_A 89 NKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 544444333333
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.12 E-value=3.5 Score=37.91 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE 306 (578)
+.+|+..+..+..++..++.++..+.
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444433
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.21 E-value=2.7 Score=36.48 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 221 IKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 221 ~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
..++..+.+|..+|.=++. ..+++|..|.++|
T Consensus 86 ~dLE~~iesL~eEl~FLKk---~heeEl~eLq~qi 117 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKK---LHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4455555555555555443 4556666666544
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.20 E-value=2.5 Score=50.26 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008082 286 GELDLARNELRQLRSALDASE 306 (578)
Q Consensus 286 ~el~~le~EieeL~s~LE~aE 306 (578)
..+..++.+...|+..+++.+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 15
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.64 E-value=2 Score=35.25 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=52.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 178 VEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLN 257 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~ 257 (578)
|.+|+.++..+....+++...+..++..+++.+...+.--.....++..+..+...++..--....|+..|..|..+|.=
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666665555556666666666666666555556677777777766654
Q ss_pred h
Q 008082 258 S 258 (578)
Q Consensus 258 ~ 258 (578)
+
T Consensus 82 L 82 (86)
T 3swk_A 82 L 82 (86)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.20 E-value=6.8 Score=46.48 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008082 194 QALEDVRKSQMQLETANANL 213 (578)
Q Consensus 194 ~l~~~~~el~~qLEea~~~l 213 (578)
.+...+.+++.+|++.....
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n 944 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEY 944 (1080)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333333
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.92 E-value=6.5 Score=33.07 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhHhH
Q 008082 173 ETLSLVEKLKNELSYCK 189 (578)
Q Consensus 173 e~~~eie~l~~~l~e~e 189 (578)
....+|..|+.++.-++
T Consensus 41 ~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 33333333444333333
No 18
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.88 E-value=5.6 Score=33.82 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=35.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 178 VEKLKNELSYCKESESQALEDVRKSQMQLETANA---NLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~---~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
|..|+.++..++......+..+.++...+..... ++.-|...+.-+...+..-...-+.+..++..|..++..|..+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333 3344444444444444444444444444455555555555544
Q ss_pred H
Q 008082 255 L 255 (578)
Q Consensus 255 l 255 (578)
+
T Consensus 106 ~ 106 (110)
T 2v4h_A 106 F 106 (110)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.30 E-value=2.6 Score=37.71 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLL 256 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~ 256 (578)
+..+..++++...++..|..++..+...++.+..+++.++.++..|+..+.+|++.+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555555555555555443
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.15 E-value=6.7 Score=34.39 Aligned_cols=30 Identities=3% Similarity=0.146 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 008082 164 MQNLRIELTETLSLVEKLKNELSYCKESES 193 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l~~~l~e~e~~~s 193 (578)
+.+++..+..+..+|+.++.+...++..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444444444444444444444444433
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.62 E-value=5.7 Score=34.95 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 008082 163 EMQNLRIELTETLSLVEKLKNELSYCKESESQ 194 (578)
Q Consensus 163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~ 194 (578)
++.+++..+..+..+|+.++.+...++..+..
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.47 E-value=6.5 Score=32.11 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 008082 137 QRLKFQLEKV 146 (578)
Q Consensus 137 ~klr~qle~~ 146 (578)
..||.+++.+
T Consensus 3 ~eLr~qi~~l 12 (86)
T 3swk_A 3 RELRRQVDQL 12 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.16 E-value=6.9 Score=34.88 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=12.5
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRL--KFQLEKVAESEAAQTKHA 157 (578)
Q Consensus 129 L~~~~~el~kl--r~qle~~~~ak~~~~k~~ 157 (578)
++..+.+|... -..+....-+-..+++-+
T Consensus 37 vd~km~ei~~~~~~~~l~~~r~aVLaALNia 67 (138)
T 3hnw_A 37 INNKITEFNKEESYRRMSAELRTDMMYLNIA 67 (138)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence 44444444422 333344444445555533
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.57 E-value=11 Score=31.34 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 115 LDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNL 167 (578)
Q Consensus 115 le~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL 167 (578)
++.+|.++..--..+...-.++.+|...+..-...+..+.+....++.++.+|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444344444555566666666655555555555444444444444
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.51 E-value=12 Score=31.40 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008082 246 ELVSKLQ 252 (578)
Q Consensus 246 ~ei~kL~ 252 (578)
.+|..|+
T Consensus 86 ~evasLn 92 (101)
T 3u59_A 86 AEVASLN 92 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.47 E-value=16 Score=33.08 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 198 DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 198 ~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+..+..+|.++....+.-...+.+++..++.+...|...+.....+..++...-.++..+
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444444444444444444444444444444444444444444443444333
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.65 E-value=16 Score=32.06 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
+.+++.....-...+.....++..+...+.++..+++.++.....|+..|..++.
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333333344444444555555555555555555444444444444443
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.60 E-value=8.1 Score=31.15 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008082 170 ELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIK 222 (578)
Q Consensus 170 el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~ 222 (578)
++..+..+|.-|+..+++++.....+.....++....+.+..++..|..+...
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443333333333333333333333333333
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.26 E-value=10 Score=31.63 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=17.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 385 SNQRDSKLAVELNKLEAEVVEFKASILDKE 414 (578)
Q Consensus 385 ~~k~~~El~k~~kkle~e~~eLk~~L~e~E 414 (578)
+|+.+....+..-.++..+..|+.+|.|++
T Consensus 67 AN~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 67 ANNMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555555556666666666665543
No 30
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.16 E-value=19 Score=32.56 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 207 ETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQN 253 (578)
Q Consensus 207 Eea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~ 253 (578)
++|+.-+..-+.....++.....+...+.+...-+..++.++..|+.
T Consensus 97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 97 DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444455554444
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.90 E-value=17 Score=31.72 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=17.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 213 LEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 213 le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
+.....++..+...+.++..+++.++.....|+..|..++
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.89 E-value=1 Score=39.98 Aligned_cols=48 Identities=23% Similarity=0.152 Sum_probs=27.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082 384 ESNQRDSKLAVELNKLEAEVVEFKASILDKETELMSLTEQNGMLKMEI 431 (578)
Q Consensus 384 ~~~k~~~El~k~~kkle~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i 431 (578)
.+|+.+....+..-.++..+..|+.++.|++.-|.....+...|+.-|
T Consensus 86 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 86 EANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777888888888888888888888877777666433
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.84 E-value=8.8 Score=30.79 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=19.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008082 186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELS 237 (578)
Q Consensus 186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~ 237 (578)
..++.....+...+..+..++..+.........++..+...+..+..+++.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444433333333333333333333333333
No 34
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.74 E-value=13 Score=31.61 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008082 163 EMQNLRIELTETLSLVEKLKNELSYCKESESQALE---DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKA 239 (578)
Q Consensus 163 el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~---~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~ 239 (578)
++..|...|..++..+......|..++..+.+... .+.-+..|++--.....+-+....++......|..++..+..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666555 333444455544444444444444444444444444443333
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.09 E-value=22 Score=32.25 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 008082 244 LEELVSKLQ 252 (578)
Q Consensus 244 Le~ei~kL~ 252 (578)
|+..|..|.
T Consensus 103 LEk~id~lE 111 (155)
T 2efr_A 103 LEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 36
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.96 E-value=2.9 Score=37.08 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082 129 LGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLET 208 (578)
Q Consensus 129 L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEe 208 (578)
+.....++.+|...+..-...+..+.+....++.++.+|..- .-+..+.-+.++......+...+..+..++.+
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas------LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS------LFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH------HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566655555555555555444444444444322 12223333344433344444444444444444
Q ss_pred HHHHHHHHHhhh
Q 008082 209 ANANLEMLRSDG 220 (578)
Q Consensus 209 a~~~le~l~~e~ 220 (578)
...-++.+...+
T Consensus 115 ~e~ll~~lq~QL 126 (135)
T 2e7s_A 115 KDMLLDTLTLQL 126 (135)
T ss_dssp HHHCC-------
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.86 E-value=7.4 Score=41.77 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008082 134 NEIQRLKFQLEKVAESEAAQTK 155 (578)
Q Consensus 134 ~el~klr~qle~~~~ak~~~~k 155 (578)
.-|.+||.+++...+....+..
T Consensus 64 krINELKnqLEdlsKnsKdseq 85 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHS 85 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHH
Confidence 3456666666665555555544
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.02 E-value=20 Score=39.08 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALD 303 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE 303 (578)
+.++...+..++.++......+.
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~ 480 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQ 480 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.30 E-value=18 Score=29.14 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082 199 VRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260 (578)
Q Consensus 199 ~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~ 260 (578)
++.+...+..+=.+|.-|+-++..++.....+..+.++++.....|..++..|..+...|..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555566666666666665543
No 40
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=82.02 E-value=15 Score=28.87 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=43.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 180 KLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK 242 (578)
Q Consensus 180 ~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~ 242 (578)
.+..++.+++.....|...|..++.+|++++..-+.+..++..+...++.-..+|.+++..+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455667777777777778888888888888877777777776666666655555555555443
No 41
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=81.91 E-value=9 Score=30.77 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVK 242 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~ 242 (578)
+.+.+..++.+++.....|...|..++.+|++++..-+.+..++..+...++.-..+|.+++..+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344556667777777777777888888888888877777777776666666665555555555443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.79 E-value=12 Score=40.83 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008082 233 ELELSKARVKSLEELVSKL 251 (578)
Q Consensus 233 eLe~~~~e~~~Le~ei~kL 251 (578)
.+.+++.++..+..+++.+
T Consensus 559 ~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.19 E-value=9.1 Score=33.29 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HHHHHHHHHHH
Q 008082 132 AMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELSYCKESESQALE---DVRKSQMQLET 208 (578)
Q Consensus 132 ~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~---~~~el~~qLEe 208 (578)
..-++..++..++.+ +..+-.-+..+...+..|..++++...+...+...++.+......+.. ....++..+.+
T Consensus 20 Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e 96 (120)
T 3i00_A 20 LYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSE 96 (120)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334555555555544 333333334455555555555554444333333333333322222211 11222333444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 008082 209 ANANLEMLRSDGIKATEAYNTL 230 (578)
Q Consensus 209 a~~~le~l~~e~~~l~~~~~~l 230 (578)
+........-.+.+|+..|..+
T Consensus 97 ~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 97 IERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555443
No 44
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.56 E-value=13 Score=31.11 Aligned_cols=80 Identities=24% Similarity=0.214 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 225 EAYNTLSLELELSKARVKSLEELVSKLQNDLLN--SSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSAL 302 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~--~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~L 302 (578)
+.|..+..+++.++.+...|...+..|+.++.. +.+.++.+....+--..+-...-....+..+..|+.|++.|+..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777765 223321100000000001111223445566777777777776665
Q ss_pred HH
Q 008082 303 DA 304 (578)
Q Consensus 303 E~ 304 (578)
..
T Consensus 92 ~~ 93 (100)
T 1go4_E 92 RA 93 (100)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.46 E-value=24 Score=29.14 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=37.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 178 VEKLKNELSYCKESESQALEDVRKSQMQLETAN---ANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~---~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
|+.|..++..++......+..+.++...+...+ .++.-|...+.-+...+..-+..-+.+..+...|...+..|..+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544333333 33344444444444444444444444444444444455444444
Q ss_pred HH
Q 008082 255 LL 256 (578)
Q Consensus 255 l~ 256 (578)
+.
T Consensus 84 ~~ 85 (94)
T 3jsv_C 84 FN 85 (94)
T ss_dssp TC
T ss_pred HH
Confidence 33
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.93 E-value=37 Score=36.44 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=20.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 122 QSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTK 155 (578)
Q Consensus 122 ~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k 155 (578)
.-.-|+.|..+++++++.+...+..........+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr 95 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILR 95 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 4455566667777777777776666554444443
No 47
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.60 E-value=35 Score=29.13 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 225 EAYNTLSLELELSKARVKSLEELV 248 (578)
Q Consensus 225 ~~~~~l~~eLe~~~~e~~~Le~ei 248 (578)
..+.++...++..-..+.-|+.+|
T Consensus 77 ~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 77 VSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444434444444433
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=76.36 E-value=30 Score=28.21 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=9.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHH
Q 008082 184 ELSYCKESESQALEDVRKSQMQ 205 (578)
Q Consensus 184 ~l~e~e~~~s~l~~~~~el~~q 205 (578)
...+++.....+......+..+
T Consensus 36 ~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.50 E-value=40 Score=28.78 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=22.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 008082 405 EFKASILDKETELMSLTEQNGMLKMEIEN 433 (578)
Q Consensus 405 eLk~~L~e~E~~lq~~~~E~~~lk~~i~~ 433 (578)
..-.+|.|.|..+..+.+.+..|..++..
T Consensus 74 ~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 74 ATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777778888888888888873
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=73.94 E-value=41 Score=28.71 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=22.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008082 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSN 260 (578)
Q Consensus 181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~ 260 (578)
++...++....++.+...+...+..|.+++. .+....+ .+..+|..+......+-.++..|+.+-+.+.|
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq-------~fsq~q~---~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQ-------GLSQAKR---DVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3444444444444444444444444433333 3333322 22223333333333444566666666666666
Q ss_pred hh
Q 008082 261 KL 262 (578)
Q Consensus 261 k~ 262 (578)
+|
T Consensus 106 k~ 107 (112)
T 1x79_B 106 KH 107 (112)
T ss_dssp --
T ss_pred hh
Confidence 65
No 51
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=72.53 E-value=53 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=17.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008082 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKAT 224 (578)
Q Consensus 181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~ 224 (578)
.+....+++.......+.+.-+...|+.+...++.....+..|+
T Consensus 64 ak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLE 107 (147)
T 2b9c_A 64 AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 107 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444333333333
No 52
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.40 E-value=42 Score=28.08 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008082 196 LEDVRKSQMQLETANANLEMLR 217 (578)
Q Consensus 196 ~~~~~el~~qLEea~~~le~l~ 217 (578)
...+..+..++..+...+..+.
T Consensus 23 ~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 23 TQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444444433
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.25 E-value=37 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082 171 LTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLE 207 (578)
Q Consensus 171 l~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLE 207 (578)
......+|..|+.++..++.....+...+..++..|+
T Consensus 36 ~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 36 SKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333333333333
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.14 E-value=51 Score=28.15 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 008082 196 LEDVRKSQMQLETAN 210 (578)
Q Consensus 196 ~~~~~el~~qLEea~ 210 (578)
....++...++..+.
T Consensus 37 ~~k~E~~k~qV~~L~ 51 (112)
T 1x79_B 37 KQSSEDSSHQISALV 51 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 55
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.33 E-value=76 Score=28.34 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
...+.-.....+.+...+..|+.+|.-+.+.+-.+
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444554444444444333
No 56
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.06 E-value=57 Score=26.79 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008082 164 MQNLRIELTETLSLVEKL 181 (578)
Q Consensus 164 l~eL~~el~e~~~eie~l 181 (578)
+..|+..+.....-|-.|
T Consensus 11 mq~LNdRlAsyIdKVR~L 28 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFL 28 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444454444433333
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.96 E-value=49 Score=27.29 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 167 LRIELTETLSLVEKLKNELSYCKESESQALE---DVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKS 243 (578)
Q Consensus 167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~---~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~ 243 (578)
|...|..+...+-.....+..+...+.+... .+.-+..|++--.....+-++...+ +..+.+.+...+..
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREk-------l~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREK-------LVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHH
Confidence 3344444444333344444444444444442 2333334444444444444444444 44444444444555
Q ss_pred HHHHHHHHHH
Q 008082 244 LEELVSKLQN 253 (578)
Q Consensus 244 Le~ei~kL~~ 253 (578)
|...+.+|+.
T Consensus 80 lq~q~~~L~~ 89 (94)
T 3jsv_C 80 LQREFNKLKV 89 (94)
T ss_dssp HHHTTC----
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 58
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=63.37 E-value=56 Score=26.14 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 128 ALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNEL 185 (578)
Q Consensus 128 ~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l 185 (578)
.....+.||+.||..++.+-.-+....++.+..-+++..|+..+.....+|..|..++
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456777888888877766666666666666665666666666665555555555543
No 59
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=62.14 E-value=66 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008082 227 YNTLSLELELSKARVKSLE 245 (578)
Q Consensus 227 ~~~l~~eLe~~~~e~~~Le 245 (578)
|+....++-....+..++.
T Consensus 62 yn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 60
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=61.73 E-value=55 Score=26.41 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKA 223 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l 223 (578)
+|+.++.++..++..++.+.. .+..++...+..|..+..++..+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED---SLARERDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp --------CTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544443 22334444444444444433333
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=61.70 E-value=61 Score=25.97 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008082 465 FLTEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQW 508 (578)
Q Consensus 465 ~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq~ 508 (578)
.+..+|...+...-.+..+|..++..+..|..++.+++.+.+..
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666667788999999999999999998777763
No 62
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=60.03 E-value=62 Score=25.58 Aligned_cols=37 Identities=14% Similarity=-0.009 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 176 SLVEKLKNELSYCKESESQALEDVRKSQMQLETANAN 212 (578)
Q Consensus 176 ~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~ 212 (578)
.+|++|-.+..++-....-+.-....+..+++++..+
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E 45 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCE 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455555554444444444444444444444444333
No 63
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.46 E-value=14 Score=40.56 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=18.1
Q ss_pred HHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhH
Q 008082 325 EQLERAKSESSQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGL 376 (578)
Q Consensus 325 e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L 376 (578)
+.+++.+.++..++..++.+......++..........+.+++.+.++...|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556655555555555555554444444444444333333333
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=57.31 E-value=85 Score=26.30 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 197 EDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
.....+.=+++-++..++.+...+..+..++.+...+++..+.....|...+..+..+|
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444554445555555555444
No 65
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.29 E-value=73 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 288 LDLARNELRQLRSALDASETRYQEEY 313 (578)
Q Consensus 288 l~~le~EieeL~s~LE~aE~~lqeE~ 313 (578)
++.++.....|..+|.+++.++....
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~ 28 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEA 28 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777776655443
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.04 E-value=1.7e+02 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhHhH
Q 008082 395 ELNKLEAEVVEFKASILDK 413 (578)
Q Consensus 395 ~~kkle~e~~eLk~~L~e~ 413 (578)
.++.|+.++..|.++|.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.75 E-value=51 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 288 LDLARNELRQLRSALDASETRYQEE 312 (578)
Q Consensus 288 l~~le~EieeL~s~LE~aE~~lqeE 312 (578)
+..++.....|...|.+++.++..+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~ 29 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARE 29 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666554433
No 68
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=53.59 E-value=85 Score=25.12 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 173 ETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANL 213 (578)
Q Consensus 173 e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l 213 (578)
.+..+|.+|+-++++++....+....+..+...|-.++..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555666666777777666666555555553333333333
No 69
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=53.51 E-value=1.2e+02 Score=26.95 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=59.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 008082 186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSSNKLAES 265 (578)
Q Consensus 186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~ 265 (578)
..+...++-|+..+..-+..-+.+..+..+.-.+-..+.+.|+....-+......+..++..|..++..+..+....
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~--- 99 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPAD--- 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCC---
Confidence 34445555555544444433333333333333333444455555555566777777888888888888888774422
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 266 MGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDASE 306 (578)
Q Consensus 266 e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~aE 306 (578)
.++.++....+.+..++-.++..++.+=
T Consensus 100 -------------P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 100 -------------PGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777788888888887776666443
No 70
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.66 E-value=1e+02 Score=25.55 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008082 234 LELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 234 Le~~~~e~~~Le~ei~kL~~el 255 (578)
+..+...+..+...+..+...+
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444333
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.42 E-value=1.2e+02 Score=26.24 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 008082 289 DLARNELRQLRSALDA 304 (578)
Q Consensus 289 ~~le~EieeL~s~LE~ 304 (578)
..|..+|+.|+..|+.
T Consensus 18 e~Lkreie~lk~ele~ 33 (120)
T 3i00_A 18 ERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 72
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.50 E-value=1.5e+02 Score=26.66 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008082 223 ATEAYNTLSLELELSKA 239 (578)
Q Consensus 223 l~~~~~~l~~eLe~~~~ 239 (578)
+.+++..+..++.....
T Consensus 101 l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 73
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.69 E-value=13 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 008082 177 LVEKLKNELSYCKESESQALEDVRKSQMQLET 208 (578)
Q Consensus 177 eie~l~~~l~e~e~~~s~l~~~~~el~~qLEe 208 (578)
.+..++.++..++....+|...+..+..+|+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666654
No 74
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=46.46 E-value=85 Score=23.08 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 008082 245 EELVSKLQ 252 (578)
Q Consensus 245 e~ei~kL~ 252 (578)
...|.+++
T Consensus 46 ~~~I~~~k 53 (60)
T 3htk_A 46 RDEVIKKK 53 (60)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 75
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=45.69 E-value=1.6e+02 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=19.6
Q ss_pred CCcCCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008082 9 PKVVERKSPRSPALEKQRPSRVSELESQLAQLQEDLKKAKEQLNASDS 56 (578)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~eLe~ql~~lqeeL~~eke~~~~~E~ 56 (578)
||+.+..+|..|+||+++.-.+ .++|.-|+.+.+.+...|.
T Consensus 24 pps~~~~~~~~~s~P~~k~~Sl-------eEIqkKLeAAEERRks~Ea 64 (143)
T 3ryc_E 24 PPSFDGVPEFNASLPRRRDPSL-------EEIQKKLEAAEERRKYQEA 64 (143)
T ss_dssp CCSSCSSCC------CCCCCCH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHHHhHHH
Confidence 7777777777777776554343 4455556555554444443
No 76
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=45.53 E-value=1.2e+02 Score=24.51 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 174 TLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANL 213 (578)
Q Consensus 174 ~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l 213 (578)
+..+..+|..++.+++....++.....++..++.+++..+
T Consensus 47 l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 47 LLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444477777777777777777777776665544
No 77
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.05 E-value=35 Score=37.44 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHH
Q 008082 411 LDKETELMSLTEQNGML 427 (578)
Q Consensus 411 ~e~E~~lq~~~~E~~~l 427 (578)
+++.+.++.+..+|-..
T Consensus 533 ~~k~t~~D~lh~en~~~ 549 (575)
T 2i1j_A 533 ETKETAMDKIHRENVRQ 549 (575)
T ss_dssp GGGCCHHHHHHHHHHHT
T ss_pred hhhcchhHHHHHHhhhc
Confidence 34555666666665543
No 78
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.38 E-value=1.4e+02 Score=24.84 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+....+...++.+...+..|+..+..+...+.++
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555444444
No 79
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=43.72 E-value=90 Score=23.42 Aligned_cols=48 Identities=29% Similarity=0.446 Sum_probs=32.7
Q ss_pred HHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHH
Q 008082 351 QIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFK 407 (578)
Q Consensus 351 eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk 407 (578)
++-+++..+.-.|.+++.|...|..|..++ --+++.+.+|..+...|+
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~El---------r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDEL---------RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHH---------HHHHHHHHHHHhhhhhhc
Confidence 455677778888888888888888888877 445555555555554443
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.66 E-value=3e+02 Score=28.33 Aligned_cols=82 Identities=7% Similarity=0.092 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhHhHhHhHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 008082 59 RRAQQEAEEAKKQLSAMSARLEESQQQLLEITTSEDTRVEELRQLSQDRDKAWQSELDAVQKQQSMDSAALGSAMNEIQR 138 (578)
Q Consensus 59 ~~~~~ELe~~k~~~~el~~~Le~~~~~~~~~~e~ek~r~~El~kl~~~~e~~~~~ele~~r~~~~~~~~~L~~~~~el~k 138 (578)
+++..-++.++..|++++.--.++...+....+.-+.+.... .+.+.....-.+.|+++|..-...+..++..|+.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~----~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~ 138 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKA----NNNDNTFKQINEDLRSRIEILRRKVIEQVQRINL 138 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 343444445555666666666666666666666655555444 2333334444444555544444445555545555
Q ss_pred HHHHHH
Q 008082 139 LKFQLE 144 (578)
Q Consensus 139 lr~qle 144 (578)
|+..++
T Consensus 139 Lq~~l~ 144 (390)
T 1deq_A 139 LQKNVR 144 (390)
T ss_pred HHHHHH
Confidence 544443
No 81
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=41.66 E-value=2.6e+02 Score=27.35 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhccccccccccccchhHHHHH
Q 008082 207 ETANANLEMLRSDGIKATEAYN-TLSLELELSKARVKSLEELV-SKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKL 284 (578)
Q Consensus 207 Eea~~~le~l~~e~~~l~~~~~-~l~~eLe~~~~e~~~Le~ei-~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL 284 (578)
+.+...++.+...+......+. .+..+++.++..+.-+..++ ..+...+.+++.+. .+-.
T Consensus 18 ~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL------------------~p~~ 79 (273)
T 3s84_A 18 EEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQL------------------TPYA 79 (273)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHhHHhHHHHHHHHHHHHHHHHHHhH
Q 008082 285 KGELDLARNELRQLRSAL----DASETRYQEEYIQSTLQIRSAYEQLERAKSESSQREADLETELKNVKAQIEELRANLL 360 (578)
Q Consensus 285 ~~el~~le~EieeL~s~L----E~aE~~lqeE~~~~~~el~~~~e~l~~~k~E~~qr~~el~~el~~~~~eleel~~~l~ 360 (578)
..-...+...+++|+..| ++...++......++..+.-..+.+. .++...+++++..+.
T Consensus 80 ~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr-----------------~k~~~~leeLr~~l~ 142 (273)
T 3s84_A 80 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFK-----------------VKIDQTVEELRRSLA 142 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHH-----------------HHHHHHHHHHHHHhh
Q ss_pred hHHHHHhh-HHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 361 DKETELQS-ISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASIL-DKETELMSLTEQNGMLKMEIENREMER 438 (578)
Q Consensus 361 d~E~eL~~-L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~-e~E~~lq~~~~E~~~lk~~i~~~~~e~ 438 (578)
=.-..++. |......|...+ ..-+.....++...+.+|+..|. -.+.-...+......++..+..+-..+
T Consensus 143 P~ae~~~~kl~~~~e~L~~ql--------~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~ 214 (273)
T 3s84_A 143 PYAQDTQEKLNHQLEGLTFQM--------KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHL 214 (273)
T ss_dssp GGCSSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHhhHHHHH
Q 008082 439 NKVNDEAISLA-EAARVAEREALMKVGFLTEEA 470 (578)
Q Consensus 439 ~~~~~e~~~~l-e~a~~~~~~~~~kl~~l~~el 470 (578)
++..+++.+.+ =-+..-.+.+...+..+...+
T Consensus 215 ~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 215 DQQVEEFRRRVEPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
No 82
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=40.95 E-value=1.4e+02 Score=23.97 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 232 LELELSKARVKSLEELVSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLARNELRQLRSALDAS 305 (578)
Q Consensus 232 ~eLe~~~~e~~~Le~ei~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le~EieeL~s~LE~a 305 (578)
-+|+.+...|..|+..|..|+..+.+..- |. .-...+..|..++..++.+++.+-.+-+..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~-y~------------~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASF-FS------------QPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTG-GG------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777788888887766521 10 011346677777777777777775555443
No 83
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=40.49 E-value=1.2e+02 Score=23.30 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 169 IELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSD 219 (578)
Q Consensus 169 ~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e 219 (578)
..+++...+|+.|+.-+..+....-.....-..++.+..-++..+.+|.+.
T Consensus 10 ~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 10 FKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 333444444444444444444333333333333344444444444444333
No 84
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.35 E-value=1.7e+02 Score=24.50 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008082 176 SLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKAT 224 (578)
Q Consensus 176 ~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~ 224 (578)
=+|+-|+..+++.+...+++++...+....++..+..+..|...+..++
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677788888888888777777777777766666666555544443
No 85
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.04 E-value=1.5e+02 Score=23.73 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008082 221 IKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 221 ~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
...+...-....+|-++...+..|..+|..+..++..+
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444455555555555555544443
No 86
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=38.99 E-value=1.7e+02 Score=24.52 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 008082 162 AEMQNLRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQ 203 (578)
Q Consensus 162 ~el~eL~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~ 203 (578)
..+..++.+|...-.+|..++..++........|...+..+.
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444555555555444444444444443333
No 87
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.25 E-value=1.6e+02 Score=23.95 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 224 TEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 224 ~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+....+....+.+...+..|+..+..+...+.+++
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555553
No 88
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=38.14 E-value=2.1e+02 Score=25.35 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=15.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 181 LKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKS 243 (578)
Q Consensus 181 l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~ 243 (578)
++..+.........+...+..+...+..+.....-|..+..-......++.-+|+.++.....
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKq 133 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444333333333333333333333333333322222223334444455555444433
No 89
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=37.60 E-value=22 Score=25.68 Aligned_cols=19 Identities=37% Similarity=0.765 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhccCC
Q 008082 505 SDQWRKAAEAATAMLSAGN 523 (578)
Q Consensus 505 ~eq~RkaaE~~~~~L~~~~ 523 (578)
-+.|++.+|.++-.|-+|+
T Consensus 12 feewkklaeeaaklleggg 30 (62)
T 2i7u_A 12 FEEWKKLAEEAAKLLEGGG 30 (62)
T ss_dssp HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 6899999999999988755
No 90
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.80 E-value=4.1e+02 Score=28.18 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=13.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 180 KLKNELSYCKESESQALEDVRKSQMQLETANANL 213 (578)
Q Consensus 180 ~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~l 213 (578)
.|+..+...+.++-.....+.+....|+.....+
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3444444444443333334444444444443333
No 91
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.15 E-value=1.6e+02 Score=23.27 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=5.5
Q ss_pred HHHhHhHHHHHHHHH
Q 008082 183 NELSYCKESESQALE 197 (578)
Q Consensus 183 ~~l~e~e~~~s~l~~ 197 (578)
..++.+-....++..
T Consensus 9 kevEnLi~EN~eLl~ 23 (77)
T 2w83_C 9 REVENLILENTQLLE 23 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 92
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.93 E-value=4e+02 Score=27.56 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 008082 242 KSLEELVSKLQNDL 255 (578)
Q Consensus 242 ~~Le~ei~kL~~el 255 (578)
.+|+.+|.+++.+|
T Consensus 446 ~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 446 EELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 93
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.08 E-value=4.5e+02 Score=27.85 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 008082 237 SKARVKSLEELV 248 (578)
Q Consensus 237 ~~~e~~~Le~ei 248 (578)
+...|..|+..|
T Consensus 180 l~~ki~~l~~~~ 191 (464)
T 1m1j_B 180 LHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 94
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=33.77 E-value=1.6e+02 Score=22.68 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008082 240 RVKSLEELVSKLQNDLL 256 (578)
Q Consensus 240 e~~~Le~ei~kL~~el~ 256 (578)
++..|...|..|+.+|.
T Consensus 57 Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 95
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=33.47 E-value=1.7e+02 Score=22.65 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 008082 137 QRLKFQLEK 145 (578)
Q Consensus 137 ~klr~qle~ 145 (578)
..+|.|+|.
T Consensus 12 ~eiRaQYE~ 20 (77)
T 3trt_A 12 RDVRQQYES 20 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455566654
No 96
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.39 E-value=1.2e+02 Score=21.16 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 008082 399 LEAEVVEFKASILDKETELMSLTEQNGMLKMEI 431 (578)
Q Consensus 399 le~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i 431 (578)
|+....+|.....+.|..+..+..|+.+|+.-+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 445555666666666666688888888887644
No 97
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.50 E-value=2e+02 Score=22.90 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008082 197 EDVRKSQMQLETANANLEMLRS 218 (578)
Q Consensus 197 ~~~~el~~qLEea~~~le~l~~ 218 (578)
..+..++..|+.++++-+.|..
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~ 39 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKK 39 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHh
Confidence 3334444444444444433333
No 98
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.98 E-value=2.9e+02 Score=25.61 Aligned_cols=44 Identities=7% Similarity=0.026 Sum_probs=17.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008082 184 ELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAY 227 (578)
Q Consensus 184 ~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~ 227 (578)
++......++.++.+...+..+|+....++..|..++..++...
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444455544444444444444444333
No 99
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=30.83 E-value=2e+02 Score=22.82 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=5.4
Q ss_pred HHHHHHHhHhHHHH
Q 008082 179 EKLKNELSYCKESE 192 (578)
Q Consensus 179 e~l~~~l~e~e~~~ 192 (578)
+.++.+...++..+
T Consensus 4 ~~l~~~~~sLE~~l 17 (84)
T 1gk4_A 4 DALKGTNESLERQM 17 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344433333333
No 100
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.31 E-value=1.5e+02 Score=23.43 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008082 178 VEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIK 222 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~ 222 (578)
|..|-.++...+..+..++..+..-+.+++.+...+..|..++..
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444433
No 101
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.24 E-value=2.1e+02 Score=22.77 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008082 167 LRIELTETLSLVEKLKNELSYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKAT 224 (578)
Q Consensus 167 L~~el~e~~~eie~l~~~l~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~ 224 (578)
++..+.....+++.|+.--.++..--.++...+..+..+-.++...++.+.....+|.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777777777777777777777776666666666665554443
No 102
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.11 E-value=2.1e+02 Score=22.78 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 210 NANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQND 254 (578)
Q Consensus 210 ~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~e 254 (578)
...+..+..+...|+..+..+...|+.++.+-..+..+|..+...
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555545555555554443
No 103
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.77 E-value=68 Score=28.54 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 448 LAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDAAQAASTEMEAELR 499 (578)
Q Consensus 448 ~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~ 499 (578)
.+++.+.+.+.+...+..+..++....+....+.++....+..+..+..+|.
T Consensus 74 dleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLe 125 (146)
T 2xnx_M 74 EQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLD 125 (146)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444443444444444444433333344444444444444444444444
No 104
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.74 E-value=3.3e+02 Score=24.25 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 109 KAWQSELDAVQKQQSMDSAALGSAMNEIQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELT 172 (578)
Q Consensus 109 ~~~~~ele~~r~~~~~~~~~L~~~~~el~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~ 172 (578)
..|..-+++-++.+.+-+.+..+++++-+..---++.+...-..+.++...++-.++.+..+|+
T Consensus 30 a~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 30 AVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 3477777776666655555566666666666666665555555555555555555555555544
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.84 E-value=1e+02 Score=22.57 Aligned_cols=7 Identities=43% Similarity=0.463 Sum_probs=2.5
Q ss_pred HHHHHhH
Q 008082 181 LKNELSY 187 (578)
Q Consensus 181 l~~~l~e 187 (578)
|+..+.+
T Consensus 24 Lk~E~~e 30 (53)
T 2yy0_A 24 LRLELAE 30 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 106
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.77 E-value=2e+02 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 400 EAEVVEFKASILDKETELMSLTEQNGMLKMEIENREME 437 (578)
Q Consensus 400 e~e~~eLk~~L~e~E~~lq~~~~E~~~lk~~i~~~~~e 437 (578)
+.-+.+|...+.+.+...+.+..++..|+..|..+..+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666677777888888888755554
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.35 E-value=5.6e+02 Score=26.54 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 008082 243 SLEELVSKLQNDL 255 (578)
Q Consensus 243 ~Le~ei~kL~~el 255 (578)
.++.++..+...+
T Consensus 453 ~~~~~~~~~~~~~ 465 (487)
T 3oja_A 453 RLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh
Confidence 3333333333333
No 108
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.86 E-value=2e+02 Score=23.52 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008082 292 RNELRQLRSALDASETRYQ 310 (578)
Q Consensus 292 e~EieeL~s~LE~aE~~lq 310 (578)
+.....|...|.+++..+.
T Consensus 18 q~~~~~LE~~l~e~E~~~~ 36 (95)
T 3mov_A 18 QKESRACLERIQELEDLLA 36 (95)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.79 E-value=2.4e+02 Score=22.05 Aligned_cols=9 Identities=56% Similarity=0.855 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 008082 247 LVSKLQNDL 255 (578)
Q Consensus 247 ei~kL~~el 255 (578)
+|..|+.++
T Consensus 55 eI~~LqseL 63 (72)
T 3nmd_A 55 LIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 110
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.56 E-value=2.9e+02 Score=22.89 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008082 467 TEEADKSSRRAARVTEQLDAAQAASTEMEAELRKLKVQSDQ 507 (578)
Q Consensus 467 ~~ele~~~~~~~~l~eql~~ae~~~~~lEaEL~klr~q~eq 507 (578)
+..++.......++..+-.....+..+|+.++.+|+.+...
T Consensus 43 E~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 33344444444455544555567888888888888854333
No 111
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.91 E-value=3.4e+02 Score=23.58 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=60.0
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHhHhHHHHHhhHHHHHHhHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHhHhHH
Q 008082 335 SQREADLETELKNVKAQIEELRANLLDKETELQSISEENEGLNLKIKTNESNQRDSKLAVELNKLEAEVVEFKASILDKE 414 (578)
Q Consensus 335 ~qr~~el~~el~~~~~eleel~~~l~d~E~eL~~L~ee~~~L~~ei~e~~~~k~~~El~k~~kkle~e~~eLk~~L~e~E 414 (578)
+-.+++++..++.+..++++-+..+ +....+ |.++..+... -.|...--++.+-+|..+..-++..++-.+
T Consensus 10 ~~~ia~L~~D~~s~~~eleEnqeEL-~iVgkM--L~EEqgKVDQ------lqKRn~~HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLEENQEEL-EIVGNM--LREEQGKVDQ------LQKRNVAHQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHhhHHH------HHHhccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666666666666666666555 333221 1121111111 012233345555555566666666665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008082 415 TELMSLTEQNGMLKMEIENREMERNKVNDEAISLAEAARVAEREALMKVGFLTEEADKSSRRAARVTEQLDA 486 (578)
Q Consensus 415 ~~lq~~~~E~~~lk~~i~~~~~e~~~~~~e~~~~le~a~~~~~~~~~kl~~l~~ele~~~~~~~~l~eql~~ 486 (578)
..|-.-.-+-..-...|. ...++.+.+-+-..--..+-..++.+-.+|++..-.+.+.-..++.
T Consensus 81 ~~Lkrn~~qQnQQSlDiR--------KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~ 144 (167)
T 4gkw_A 81 QLLKRNSQQQNQQSLDMR--------KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEK 144 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHhHhhhhHH--------HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332212211111111 1123333342222233345556677777777776554444333333
No 112
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.39 E-value=4.7e+02 Score=24.56 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=50.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008082 186 SYCKESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLNSS 259 (578)
Q Consensus 186 ~e~e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~~~ 259 (578)
.+-+..+..+...+..-..++-.....|..+..++...+..+..+...+..+...+...+..|+.|..++.+..
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s 153 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSS
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhh
Confidence 34444455555555555556666666677777777777777777777777777888888888888888876543
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.79 E-value=2.2e+02 Score=20.65 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=3.9
Q ss_pred HHHHHHhhhHH
Q 008082 212 NLEMLRSDGIK 222 (578)
Q Consensus 212 ~le~l~~e~~~ 222 (578)
.+..+.....+
T Consensus 17 ~l~~L~~rN~r 27 (51)
T 3m91_A 17 RIDSLAARNSK 27 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 114
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.60 E-value=3.8e+02 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008082 236 LSKARVKSLEELVSKLQNDLLNS 258 (578)
Q Consensus 236 ~~~~e~~~Le~ei~kL~~el~~~ 258 (578)
.+...+..|+..|.+|..++...
T Consensus 65 eL~~ki~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 65 ELSDKIDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666554
No 115
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.40 E-value=2.3e+02 Score=21.36 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 144 EKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNE 184 (578)
Q Consensus 144 e~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~ 184 (578)
+.+..++..-..+...++.++..|..+...+..+|+.|+..
T Consensus 19 eAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 19 EAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555544444444443
No 116
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.62 E-value=7.3e+02 Score=26.18 Aligned_cols=89 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 136 IQRLKFQLEKVAESEAAQTKHAESAYAEMQNLRIELTETLSLVEKLKNELS-YCKESESQALEDVRKSQMQLETANANLE 214 (578)
Q Consensus 136 l~klr~qle~~~~ak~~~~k~~~~le~el~eL~~el~e~~~eie~l~~~l~-e~e~~~s~l~~~~~el~~qLEea~~~le 214 (578)
|.+|+..+............ +--.+.++-.+.-......++.-.+++ +++..+.-++..|..--..|.-++.-|+
T Consensus 67 I~kLkn~L~~~s~s~~~s~~----y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~ 142 (491)
T 1m1j_A 67 IDNIRQQLADSQNKYKTSNR----VIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQ 142 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHH----HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHH
Q 008082 215 MLRSDGIKATEAYN 228 (578)
Q Consensus 215 ~l~~e~~~l~~~~~ 228 (578)
.+..++.+|+..+.
T Consensus 143 ~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 143 EQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Done!