Query 008082
Match_columns 578
No_of_seqs 229 out of 426
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 17:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008082.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008082hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 68.9 24 0.0017 27.6 11.4 70 191-260 16-100 (107)
2 d1seta1 a.2.7.1 (A:1-110) Sery 33.4 97 0.007 23.7 9.6 25 232-256 71-95 (110)
3 d1seta1 a.2.7.1 (A:1-110) Sery 32.0 1E+02 0.0074 23.6 11.2 31 281-311 66-96 (110)
4 d2ap3a1 a.24.27.1 (A:12-196) H 22.7 1.6E+02 0.012 22.7 19.9 31 222-252 148-178 (185)
5 d2ap3a1 a.24.27.1 (A:12-196) H 15.6 2.3E+02 0.017 21.6 19.3 9 247-255 30-38 (185)
6 d1ez3a_ a.47.2.1 (A:) Syntaxin 13.0 2.7E+02 0.02 21.2 11.1 18 214-231 96-113 (124)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 11.8 3.1E+02 0.022 21.1 12.8 9 165-173 11-19 (133)
8 d2ncda_ c.37.1.9 (A:) Kinesin 8.6 1.7E+02 0.012 27.3 5.3 42 28-69 3-44 (368)
9 d1gqea_ e.38.1.1 (A:) Polypept 8.0 7.1E+02 0.052 22.7 11.8 101 178-292 1-111 (362)
10 d1k4ta1 a.2.8.1 (A:641-712) Eu 7.7 3.7E+02 0.027 19.1 7.4 67 189-257 1-67 (72)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=68.90 E-value=24 Score=27.58 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 191 SESQALEDVRKSQMQLETANANLEMLRSDG---------------IKATEAYNTLSLELELSKARVKSLEELVSKLQNDL 255 (578)
Q Consensus 191 ~~s~l~~~~~el~~qLEea~~~le~l~~e~---------------~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el 255 (578)
....+...+..+..++.+....+.++..-- ....+.+..+...++.+..++..|+..+..+...+
T Consensus 16 el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 16 QAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555444310 23445556666666666666666666666666666
Q ss_pred Hhhhh
Q 008082 256 LNSSN 260 (578)
Q Consensus 256 ~~~~~ 260 (578)
..+..
T Consensus 96 ~~~~~ 100 (107)
T d1fxka_ 96 QEMQV 100 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66644
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=33.36 E-value=97 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 232 LELELSKARVKSLEELVSKLQNDLL 256 (578)
Q Consensus 232 ~eLe~~~~e~~~Le~ei~kL~~el~ 256 (578)
.++..+..++..|+..+..+..++.
T Consensus 71 ~~~k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 71 ARGKALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=32.03 E-value=1e+02 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 281 IDKLKGELDLARNELRQLRSALDASETRYQE 311 (578)
Q Consensus 281 i~eL~~el~~le~EieeL~s~LE~aE~~lqe 311 (578)
...+..+...+..++..+...+..++..+..
T Consensus 66 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 66 KEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777766665553
No 4
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=22.69 E-value=1.6e+02 Score=22.70 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 222 KATEAYNTLSLELELSKARVKSLEELVSKLQ 252 (578)
Q Consensus 222 ~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~ 252 (578)
.+...+..+...+..+...+..+...+..+.
T Consensus 148 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T d2ap3a1 148 GVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQ 178 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333443444333
No 5
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=15.57 E-value=2.3e+02 Score=21.60 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 008082 247 LVSKLQNDL 255 (578)
Q Consensus 247 ei~kL~~el 255 (578)
.+..+...+
T Consensus 30 k~~~~e~~~ 38 (185)
T d2ap3a1 30 KIAELDEKK 38 (185)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 6
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.01 E-value=2.7e+02 Score=21.17 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=8.1
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 008082 214 EMLRSDGIKATEAYNTLS 231 (578)
Q Consensus 214 e~l~~e~~~l~~~~~~l~ 231 (578)
..|.+.+..+...|..+.
T Consensus 96 ~~L~~kf~e~m~~yq~~q 113 (124)
T d1ez3a_ 96 STLSRKFVEVMSEYNATQ 113 (124)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.77 E-value=3.1e+02 Score=21.05 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 008082 165 QNLRIELTE 173 (578)
Q Consensus 165 ~eL~~el~e 173 (578)
+.+...+..
T Consensus 11 ~~l~~~l~~ 19 (133)
T d1fxkc_ 11 NIYQSQVEL 19 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 8
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.57 E-value=1.7e+02 Score=27.26 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008082 28 SRVSELESQLAQLQEDLKKAKEQLNASDSWKRRAQQEAEEAK 69 (578)
Q Consensus 28 ~~~~eLe~ql~~lqeeL~~eke~~~~~E~~k~~~~~ELe~~k 69 (578)
..+++|...+.++.-+++..++++....-.|+++..+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (368)
T d2ncda_ 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44 (368)
T ss_dssp SSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=8.04 E-value=7.1e+02 Score=22.74 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhHHHHHHHHH--HHHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008082 178 VEKLKNELSYCKESESQALE--DVRKSQMQLETANANLE--------MLRSDGIKATEAYNTLSLELELSKARVKSLEEL 247 (578)
Q Consensus 178 ie~l~~~l~e~e~~~s~l~~--~~~el~~qLEea~~~le--------~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~e 247 (578)
|..++.+++++...+..+.. .++.+..++++++..+. ..-..+.+-...+..+...++.+...+..+...
T Consensus 1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhccccccccccccchhHHHHHHHHHHHHH
Q 008082 248 VSKLQNDLLNSSNKLAESMGDVHLSQKNGENEEIDKLKGELDLAR 292 (578)
Q Consensus 248 i~kL~~el~~~~~k~~~~e~~~~~~~~~e~~eei~eL~~el~~le 292 (578)
+.-+..+-...-.. +...++..|...+..++
T Consensus 81 ~Ela~ee~deel~~--------------e~~~~l~~l~~~l~~le 111 (362)
T d1gqea_ 81 LELAVEADDEETFN--------------EAVAELDALEEKLAQLE 111 (362)
T ss_dssp HHHHHHHTCHHHHH--------------HHHHHHHHHHHHHHHHG
T ss_pred HHHhhhhhhHHHHH--------------HHHHHHHHHhhhhhHHH
No 10
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.70 E-value=3.7e+02 Score=19.10 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008082 189 KESESQALEDVRKSQMQLETANANLEMLRSDGIKATEAYNTLSLELELSKARVKSLEELVSKLQNDLLN 257 (578)
Q Consensus 189 e~~~s~l~~~~~el~~qLEea~~~le~l~~e~~~l~~~~~~l~~eLe~~~~e~~~Le~ei~kL~~el~~ 257 (578)
+.+...++..|..-..+|.++..++-.+..+... ..-.....-++.-...+..|++++.+|+-+-++
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~--~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTD 67 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKV--MKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 67 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Done!