BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008085
(578 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 167/561 (29%), Positives = 262/561 (46%), Gaps = 79/561 (14%)
Query: 27 SITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHV-PNNISIH 85
S RHYK++++ C+ ++ +NGQFPGP I A GD +++++ N + + IH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 86 WHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLR-ATVYGPL 144
WHGI Q + WADG A I+QC I G+++ YNFT+ GT F+H H+ R A +YG L
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNP-GTFFYHGHLGMQRSAGLYGSL 119
Query: 145 VIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGP--------------- 189
++ P +G PF E+ ++ +W++ ++I Q + + P
Sbjct: 120 IVDPPQGKKEPFHYD-GEINLLLSDWWH---QSIHKQEVGLSSKPIRWIGEPQTILLNGR 175
Query: 190 -----NVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHS 244
+++ Y N P L + + V P KTY +R+ + L F+I NH
Sbjct: 176 GQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQ 235
Query: 245 VTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNST 304
+ VV+ D Y++ F T + I G++ ++L+ + P+ + +S A T T
Sbjct: 236 LLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQN-PSENYWVSVGTRARHPNTPPGLT 294
Query: 305 VAGILEYEAPAKFPRSSTVSIKKLPLMKP-TLPALNDTAFAFNYTTRLRSLANAQFPANV 363
+ L S+ KLP P PA +D + N+T R+ + + P
Sbjct: 295 LLNYLPN------------SVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKP--- 339
Query: 364 PQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVNNFSFILPSTALLQA------H 417
P N+R F T N K+A +N+ S LP T L A H
Sbjct: 340 PVKFNRRIFLL-----------NTQNVINGYVKWA--INDVSLALPPTPYLGAMKYNLLH 386
Query: 418 FFGQN---GVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPFNASVELVMQDTSTL 474
F QN V+ D+ TPP N G V V++++Q+ + +
Sbjct: 387 AFDQNPPPEVFPEDYD---------IDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMM 437
Query: 475 G---AESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFR 531
+E+HP HLHG +F+V+G G G + +++ + NL +P RNTV + GW AIRF
Sbjct: 438 KENLSETHPWHLHGHDFWVLGYGDGKFS-AEEESSLNLKNPPLRNTVVIFPYGWTAIRFV 496
Query: 532 ADNPGVWFMHCHFEVHISWGL 552
ADNPGVW HCH E H+ G+
Sbjct: 497 ADNPGVWAFHCHIEPHLHMGM 517
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 149/528 (28%), Positives = 228/528 (43%), Gaps = 87/528 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ I VN FP P I +GDR + V++++ N+ SIHWHG Q + WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
++ QCPI TG +++Y+F + Q GT ++H+H+S + GP+V++ P +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
I +W++ + + GA +DA INGL G A D + V
Sbjct: 141 DDSTVITLADWYHL--------AAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK Y RL++ + + FSI HS+TV++ D++ +K D L I Q + +L A
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
N + + A P +G F T + IL Y+ A +++ + PL++ L L
Sbjct: 252 DVDN--YWIRALP-NSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPSTNPLVESALTTLK 308
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
TA + T P V +N F F G T
Sbjct: 309 GTAAPGSPT-----------PGGVDLALNMAFGFAGGNFT-------------------- 337
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+N SF P+ +L G ++ V LP
Sbjct: 338 -INGASFTPPTVPVLLQILSGAQSA----------------------ADLLPAGSVYSLP 374
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NA +E+ + T+ HP HLHG F V+ S +N +PV R+ V
Sbjct: 375 ANADIEISLPATAAAPGFPHPFHLHGHVFAVVR--------SAGSSTYNYANPVYRDVVS 426
Query: 519 -GVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
G P G V IRFR DNPG WF+HCH + H+ G +V+ ++P+
Sbjct: 427 TGAP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA---VVMAEDIPD 470
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 149/528 (28%), Positives = 228/528 (43%), Gaps = 87/528 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ I VN FP P I +GDR + V++++ N+ SIHWHG Q + WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
++ QCPI TG +++Y+F + Q GT ++H+H+S + GP+V++ P +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
I +W++ + + GA +DA INGL G A D + V
Sbjct: 141 DDSTVITLADWYHL--------AAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK Y RL++ + + FSI HS+TV++ D++ +K D L I Q + +L A
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
N + + A P +G F T + IL Y+ A +++ + PL++ L L
Sbjct: 252 DVDN--YWIRALP-NSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPSTNPLVESALTTLK 308
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
TA + T P V +N F F G T
Sbjct: 309 GTAAPGSPT-----------PGGVDLALNMAFGFAGGNFT-------------------- 337
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+N SF P+ +L G ++ V LP
Sbjct: 338 -INGASFTPPTVPVLLQILSGAQSA----------------------ADLLPAGSVYSLP 374
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NA +E+ + T+ HP HLHG F V+ S +N +PV R+ V
Sbjct: 375 ANADIEISLPATAAAPGFPHPFHLHGHVFAVVR--------SAGSSTYNYANPVYRDVVS 426
Query: 519 -GVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
G P G V IRFR DNPG WF+HCH + H+ G +V+ ++P+
Sbjct: 427 TGAP-GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA---VVMAEDIPD 470
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 145/527 (27%), Positives = 228/527 (43%), Gaps = 85/527 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ I VN FP P I +GDR + V++++ N+ SIHWHG Q + WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
++ QCPI TG +++Y+F + Q GT ++H+H+S + GP+V++ P+ +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKSLYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
I +W++ + + G+ +DA INGL G + D + V
Sbjct: 141 DDSTVITLADWYHL--------AAKVGSPVPTADATLINGL-GRSIDTLNADLAVITVTK 191
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK Y RL++ + + FSI HS+TV++ D++ +K D + I Q + +L A
Sbjct: 192 GKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLNADQ 251
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
N + + A P +G FD + IL Y+ A +++ + PL++ L L
Sbjct: 252 DVGN--YWIRALP-NSGTRNFDGGVNSAILRYDGAAPVEPTTSQTPSTNPLVESALTTLE 308
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
TA + P V +N F F G KF
Sbjct: 309 GTA-----------APGSPAPGGVDLALNMAFGFAGG-------------------KF-- 336
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
++N SF P+ +L G ++ V LP
Sbjct: 337 TINGASFTPPTVPVLLQILSGAQSA----------------------QDLLPSGSVYSLP 374
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVG 519
NA +E+ + T+ HP HLHG F V+ S +N +PV R+ V
Sbjct: 375 ANADIEISLPATAAAPGFPHPFHLHGHTFAVVR--------SAGSSTYNYENPVYRDVVS 426
Query: 520 VPS-GGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
S G V IRFR DNPG WF+HCH + H+ G +V+ ++P
Sbjct: 427 TGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA---VVMAEDIPE 470
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 145/536 (27%), Positives = 234/536 (43%), Gaps = 90/536 (16%)
Query: 36 IKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPN-----NISIHWHGIR 90
I +VT T++ + NG FPGP I +GD I V++++ N +IHWHG+
Sbjct: 10 ISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLF 69
Query: 91 QLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-P 148
Q + WADGPA++ QCPI +G S++Y+FT+ Q GT ++H+H+S + GPLV++ P
Sbjct: 70 QHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDP 129
Query: 149 KRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCS 208
+ I +W++ T A + + P +D+ INGL G +
Sbjct: 130 SDPYASMYDVDDDTTVITLSDWYH--TAAKLGPAF-----PPNADSVLINGL-GRFAGGN 181
Query: 209 AKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPG 268
A D + V+ K Y RL++ + + FSI H++T+++VD + + + D + I
Sbjct: 182 ASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFAS 241
Query: 269 QTTNILLKAKPSYPNATFLMSARPYATGQGTFDNS--TVAGILEYEAPAKFPRSSTVSIK 326
Q + +L A S N + + A P GT D + + IL Y ++ +
Sbjct: 242 QRYSFVLNATQSVDN--YWIRAIP---NTGTIDTTGGLNSAILRYSGADIVDPTANATTS 296
Query: 327 KLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQ 386
+PL++ L L+ A + LA +N F F
Sbjct: 297 VIPLVETDLVPLDSPAAPGDPVVGGVDLA-----------MNLDFSF------------- 332
Query: 387 TCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNN 446
N T F +NN + I P+ +L G
Sbjct: 333 ------NGTNFF--INNETLIPPTVPVLLQILSGAQSA---------------------- 362
Query: 447 TSVMNGTKVVVLPFNASVELVMQDTSTLGAES-----HPLHLHGFNFFVIGQGFGNYDPS 501
+ ++ V LP N+++EL T+ G + HP HLHG F V+ S
Sbjct: 363 SDLLPTGSVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVR--------S 414
Query: 502 KDRKNFNLIDPVERNTVGVPS-GGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAW 556
++N ++PV R+TV + G V IRF DN G WF+HCH + H+ G + +
Sbjct: 415 AGSSDYNYVNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVF 470
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 145/519 (27%), Positives = 227/519 (43%), Gaps = 83/519 (15%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPAY 102
+ I VNG FP P I ++GDR + VV+ + N+ SIHWHG Q + WADGPA+
Sbjct: 22 RDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAF 81
Query: 103 ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKPY 160
+ QCPI +G S++Y+F + Q GT ++H+H+S + GP V++ PK +
Sbjct: 82 VNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDN 141
Query: 161 KEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPG 220
+ I +W++ T A + GA DA INGL G + + V+ G
Sbjct: 142 ESTVITLTDWYH--TAARLGPRFPLGA-----DATLINGL-GRSASTPTAALAVINVQHG 193
Query: 221 KTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280
K Y RL++ + + FSI H++TV++VD I + D + I Q + +L A +
Sbjct: 194 KRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNANQT 253
Query: 281 YPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALND 340
N + + A P G F + IL Y+ ++T + +PL++ L L
Sbjct: 254 VGN--YWIRANP-NFGTVGFAGGINSAILRYQGAPVAEPTTTQTTSVIPLIETNLHPL-- 308
Query: 341 TAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAAS 400
R+ + + P V + +N F F N T F
Sbjct: 309 --------ARM-PVPGSPTPGGVDKALNLAFNF-------------------NGTNFF-- 338
Query: 401 VNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPF 460
+NN SF P+ +L G ++ V LP
Sbjct: 339 INNASFTPPTVPVLLQILSGAQTA----------------------QDLLPAGSVYPLPA 376
Query: 461 NASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV-- 518
++++E+ + T+ HP HLHG F V+ S +N DP+ R+ V
Sbjct: 377 HSTIEITLPATALAPGAPHPFHLHGHAFAVVR--------SAGSTTYNYNDPIFRDVVST 428
Query: 519 GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAW 556
G P+ G V IRF+ DNPG WF+HCH + H+ G + +
Sbjct: 429 GTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVF 467
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 147/539 (27%), Positives = 230/539 (42%), Gaps = 98/539 (18%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPAY 102
+ + VNG P P I +GDR + V++ + N+ SIHWHG Q + WADGPA+
Sbjct: 22 REAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAF 81
Query: 103 ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKPY 160
+ QCPI +G S++Y+F + Q GT ++H+H+S + GP V++ P +
Sbjct: 82 VNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDN 141
Query: 161 KEVPIIFGEWFNADTEAIINQSLQTGAGPNV---SDAYTINGLPGPLYNCSAKDTFKLKV 217
+ I +W++ + GP SD+ INGL G + D +KV
Sbjct: 142 DDTVITLADWYH----------VAAKLGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKV 190
Query: 218 KPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKA 277
GK Y RL++ + + FSI NH++T+++ D+I + + D + I Q + +L A
Sbjct: 191 TQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDA 250
Query: 278 KPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPA 337
S P + + A P A G F + IL Y+ + +S + PL + L
Sbjct: 251 --SQPVDNYWIRANP-AFGNTGFAGGINSAILRYDGAPEIEPTSVQTTPTKPLNEVDLHP 307
Query: 338 LNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKF 397
L+ + + P V + +N F F N T F
Sbjct: 308 LSPMP-----------VPGSPEPGGVDKPLNLVFNF-------------------NGTNF 337
Query: 398 AASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVV 457
+N+ +F+ PS +L G ++ V V
Sbjct: 338 F--INDHTFVPPSVPVLLQILSGAQAA----------------------QDLVPEGSVFV 373
Query: 458 LPFNASVELVMQDTSTLGAESHPLHLHGFNFFVI---GQGFGNYDPSKDRKNFNLIDPVE 514
LP N+S+E+ T+ HP HLHG F V+ G NYD +P+
Sbjct: 374 LPSNSSIEISFPATANAPGFPHPFHLHGHAFAVVRSAGSSVYNYD-----------NPIF 422
Query: 515 RNTV--GVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPP 571
R+ V G P G V IRF +NPG WF+HCH + H+ G +V+ + P+ K P
Sbjct: 423 RDVVSTGQP-GDNVTIRFETNNPGPWFLHCHIDFHLDAGFA---VVMAEDTPDTKAANP 477
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 148/533 (27%), Positives = 220/533 (41%), Gaps = 97/533 (18%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPAY 102
++ I VN FP P I GD + +VN + N+ SIHWHG Q + WADGPA+
Sbjct: 22 RAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAF 81
Query: 103 ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKPY 160
I QCPI +G S++Y+F + GQ GT ++H+H+S + GP V++ P +
Sbjct: 82 INQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVDD 141
Query: 161 KEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPG 220
+ I +W++ A + GA D+ INGL G + D + V G
Sbjct: 142 ESTVITLADWYHV--AAKLGPRFPKGA-----DSTLINGL-GRSTSTPTADLAVISVTKG 193
Query: 221 KTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280
K Y RL++ + + FSI +H +TV++ D + + D + I Q + +L A
Sbjct: 194 KRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQD 253
Query: 281 YPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALND 340
N + + A P G F + + IL Y+ P P N
Sbjct: 254 VDN--YWIRANP-NFGTTGFADGVNSAILRYDD-----------------ADPVEPVTNQ 293
Query: 341 TAFAFNYTTRLRSLANAQFPANVPQ-----TVNKRFFFTVGLGTNPCPKNQTCQGPNNST 395
T T L L + P N Q +N F F + T
Sbjct: 294 TGTTLLLETDLHPLTSMPVPGNPTQGGADLNLNMAFNF-------------------DGT 334
Query: 396 KFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKV 455
F +N SF P+ +L G N ++ V
Sbjct: 335 NFF--INGESFTPPTVPVLLQIISGANTA----------------------QDLLPSGSV 370
Query: 456 VVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVER 515
LP N+S+E+ T+ HP HLHG F V+ S ++N DPV R
Sbjct: 371 YSLPSNSSIEITFPATTAAPGAPHPFHLHGHVFAVVR--------SAGSTSYNYDDPVWR 422
Query: 516 NTV--GVP-SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
+ V G P +G V IRF+ DNPG WF+HCH + H+ G +V+ ++PN
Sbjct: 423 DVVSTGTPQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFA---VVMAEDIPN 472
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/531 (27%), Positives = 235/531 (44%), Gaps = 86/531 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ + VNG PGP + GDR + V++++ N+ SIHWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
+I QCPI G S++Y+F + Q GT ++H+H+S + GP V++ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
+ I +W++ T A + GA DA ING G + S + +KV
Sbjct: 141 NDDTVITLADWYH--TAAKLGPRFPGGA-----DATLING-KGRAPSDSVAELSVIKVTK 192
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK Y RL++ + N FSI H++T+++VD++ + + D + I Q + +L A
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
+ N + + A P G FD + IL Y+ P ++PT
Sbjct: 253 AVDN--YWIRANPNFGNVG-FDGGINSAILRYDG--------------APAVEPTT---- 291
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
N TT ++ L L + P P + + G + + A
Sbjct: 292 ------NQTTSVKPLNEVDLHP---------------LVSTPVPGSPSSGGVDKAINMAF 330
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+ N +F + + + P+ P++ +G + +G+ V VLP
Sbjct: 331 NFNGSNFFINGASFVP--------------PTVPVLLQILSGAQTAQDLLPSGS-VYVLP 375
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NAS+E+ T+ HP HLHG F V+ S +N +P+ R+ V
Sbjct: 376 SNASIEISFPATAAAPGAPHPFHLHGHTFAVVR--------SAGSTVYNYDNPIFRDVVS 427
Query: 519 -GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQK 567
G P+ G V IRF +NPG WF+HCH + H+ G +V+ + P+ K
Sbjct: 428 TGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFA---VVMAEDTPDVK 475
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 142/526 (26%), Positives = 224/526 (42%), Gaps = 93/526 (17%)
Query: 46 HTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPN-----NISIHWHGIRQLLSGWADGP 100
H++ + VNG PGP I +GD+ + V+N++ N + S+HWHG Q + WADGP
Sbjct: 20 HSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGP 79
Query: 101 AYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVY-----GPLVIF-PKRGVPY 154
A++ QCPI G S++Y+F+ Q GT ++H+H+S T Y GP V++ P
Sbjct: 80 AFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLS----TQYCDGDRGPFVVYDPNDPSAN 135
Query: 155 PFPKPYKEVPIIFGEWFNADTEAIINQSLQTG-AGPNVSDAYTINGLPGPLYNCSAKDTF 213
+ I +W++ + Q G A P +DA ING G + + D
Sbjct: 136 LYDVDNLNTVITLTDWYHT--------AAQNGPAKPGGADATLINGQ-GRGPSSPSADLA 186
Query: 214 KLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNI 273
+ V GK Y RL++ + + FSI H +T++ VD+I ++ + I Q +
Sbjct: 187 VISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYAAQRYSF 246
Query: 274 LLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKP 333
+L A + N + + A P G F N + IL Y A +++ + PL +
Sbjct: 247 ILNANQAVNN--YWIRANPNQGNVG-FTNGINSAILRYSGAAATQPTTSQTSSVQPLDQT 303
Query: 334 TLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNN 393
L L TA + + V +N+ F F N
Sbjct: 304 NLHPLTATA-----------VPGSPVAGGVNLAINQAFNF------------------NG 334
Query: 394 STKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGT 453
+ F V+ SF+ P+ +L G ++
Sbjct: 335 TNHF---VDGASFVPPTVPVLSQIVSGAQSA----------------------ADLLASG 369
Query: 454 KVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPV 513
V LP +A++E+ TS HP HLHG F V+ S +N DP+
Sbjct: 370 LVYSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVV--------RSAGSTTYNYNDPI 421
Query: 514 ERNTV--GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAW 556
R+TV G P+ V IRF+ +NPG WF+HCH + H+ G + +
Sbjct: 422 FRDTVSTGTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/531 (27%), Positives = 234/531 (44%), Gaps = 86/531 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ + VNG PGP + GDR + V++++ N+ SIHWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
+I QCPI G S++Y+F + Q GT ++H+H+S + GP V++ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
+ I +W++ T A + GA DA ING G + S + +KV
Sbjct: 141 NDDTVITLADWYH--TAAKLGPRFPGGA-----DATLING-KGRAPSDSVAELSVIKVTK 192
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK Y RL++ + N FSI H++T+++VD++ + + D + I Q + +L A
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
+ N + + A P G FD + IL Y+ P ++PT
Sbjct: 253 AVDN--YWIRANPNFGNVG-FDGGINSAILRYDG--------------APAVEPTT---- 291
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
N TT ++ L L + P P + G + + A
Sbjct: 292 ------NQTTSVKPLNEVDLHP---------------LVSTPVPGAPSSGGVDKAINMAF 330
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+ N +F + + + P+ P++ +G + +G+ V VLP
Sbjct: 331 NFNGSNFFINGASFVP--------------PTVPVLLQILSGAQTAQDLLPSGS-VYVLP 375
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NAS+E+ T+ HP HLHG F V+ S +N +P+ R+ V
Sbjct: 376 SNASIEISFPATAAAPGAPHPFHLHGHTFAVVR--------SAGSTVYNYDNPIFRDVVS 427
Query: 519 -GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQK 567
G P+ G V IRF +NPG WF+HCH + H+ G +V+ + P+ K
Sbjct: 428 TGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFA---VVMAEDTPDVK 475
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/535 (27%), Positives = 217/535 (40%), Gaps = 95/535 (17%)
Query: 51 ITVNGQFPGPRIVAREGDRLIIKVVNHVPN-----NISIHWHGIRQLLSGWADGPAYITQ 105
+ G FPGP I GD I N + + SIHWHG Q + WADGPA+ITQ
Sbjct: 26 VNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQ 85
Query: 106 CPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKPYKEV 163
CPI G S+ YNF + G GT ++H+H++ + GP V++ P +
Sbjct: 86 CPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTT 145
Query: 164 PIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTY 223
I +W++ ++ + + G G +D+ I+GL N +A + V+ GK Y
Sbjct: 146 IITLADWYH-----VLAKEMGAG-GAITADSTLIDGLGRTHVNVAAVPLSVITVEVGKRY 199
Query: 224 LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPN 283
+RL++ + + FSI H +T+++ D + + D + I Q + +L A P
Sbjct: 200 RMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNAN--QPV 257
Query: 284 ATFLMSARPYATGQGTFDNSTVAGILEYEAPAK---FPRSSTVSIKKLPLMKPTLPALND 340
+ + A P + G+G FD + IL Y+ +STV K L
Sbjct: 258 GNYWIRANPNSGGEG-FDGGINSAILRYDGATTADPVTVASTVHTKCL------------ 304
Query: 341 TAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAAS 400
T L L+ P N Q G C N S FA
Sbjct: 305 ------IETDLHPLSRNGVPGNPHQ------------GGADCNLNL-------SLGFACG 339
Query: 401 ---VNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVV 457
+N SF P+ +L G N ++ V+
Sbjct: 340 NFVINGVSFTPPTVPVLLQICSGANTA----------------------ADLLPSGSVIS 377
Query: 458 LPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNT 517
LP N+++E+ + + G HP HLHG +F V S N DP+ R+
Sbjct: 378 LPSNSTIEIALPAGAAGGP--HPFHLHGHDFAV--------SESASNSTSNYDDPIWRDV 427
Query: 518 VGVPS-GGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPP 571
V + G V IRF DNPG WF+HCH + H+ G IV ++PN P
Sbjct: 428 VSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFA---IVFAEDIPNTASANP 479
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/520 (27%), Positives = 222/520 (42%), Gaps = 83/520 (15%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ + VNG PGP I GDR + V++++ N+ SIHWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
+I QCPI +G S++Y+F + Q GT ++H+H+S + GP V++ P +
Sbjct: 81 FINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
+ I +W++ A + + GA DA ING G + + D + V P
Sbjct: 141 NDDTVITLVDWYH--VAAKLGPAFPLGA-----DATLING-KGRSPSTTTADLSVISVTP 192
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK Y RL++ + + FSI H++T+++ D+I D + I Q + +L+A
Sbjct: 193 GKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQ 252
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
+ N + + A P G F + IL Y+ A ++T + PL + L L
Sbjct: 253 AVDN--YWIRANPNFGNVG-FTGGINSAILRYDGAAAVEPTTTQTTSTAPLNEVNLHPLV 309
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
TA + + V +N F F N T F
Sbjct: 310 ATA-----------VPGSPVAGGVDLAINMAFNF-------------------NGTNFF- 338
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+N SF P+ +L G N ++ V LP
Sbjct: 339 -INGASFTPPTVPVLLQIISGAQ----------------------NAQDLLPSGSVYSLP 375
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NA +E+ T+ HP HLHG F V+ S +N +P+ R+ V
Sbjct: 376 SNADIEISFPATAAAPGAPHPFHLHGHAFAVV--------RSAGSTVYNYDNPIFRDVVS 427
Query: 519 -GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAW 556
G P+ G V IRFR DNPG WF+HCH + H+ G + +
Sbjct: 428 TGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 143/535 (26%), Positives = 234/535 (43%), Gaps = 86/535 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ + VNG PGP + GDR + V++++ N+ S+HWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
+I QCPI G S++Y+F + Q GT ++H+H+S + GP V++ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
+ I +W++ T A + GA DA ING + SA+ + +KV
Sbjct: 141 NDDTVITLADWYH--TAAKLGPRFPAGA-----DATLINGKGRAPSDTSAELSV-IKVTK 192
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK RL++ + + FSI H++T+++VD+ + D + I Q + +L A
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFVLNANQ 252
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
+ N + + A P G F+ + IL Y+ P ++PT
Sbjct: 253 AVDN--YWIRANPNFGNVG-FNGGINSAILRYDG--------------APAVEPTT---- 291
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
N TT ++ L L + P P + + G + + A
Sbjct: 292 ------NQTTSVKPLNEVNLHP---------------LVSTPVPGSPSSGGVDKAINMAF 330
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+ N +F + + + PS P++ +G + +G+ V VLP
Sbjct: 331 NFNGSNFFINGASFVP--------------PSVPVLLQILSGAQTAQDLLPSGS-VXVLP 375
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NAS+E+ T+ HP HLHG F V+ S +N +P+ R+ V
Sbjct: 376 SNASIEISFPATAAAPGAPHPFHLHGHTFAVVR--------SAGSTVYNYSNPIFRDVVS 427
Query: 519 -GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPP 571
G P+ G V IRF +NPG WF+HCH + H+ G +V ++P+ K P
Sbjct: 428 TGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA---VVQAEDVPDVKATNP 479
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 158/545 (28%), Positives = 224/545 (41%), Gaps = 93/545 (17%)
Query: 40 NVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLS 94
NV+ T++ I VNG GP I + D + VVN + N SIHWHG+ Q +
Sbjct: 15 NVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGT 73
Query: 95 GWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIFPKRGVP 153
WADG + QCPI G +++Y FT +G GT ++H+H + GP+VI+
Sbjct: 74 NWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDND-- 131
Query: 154 YPFPKPYKE----VPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSA 209
P Y E I +W++ I S+Q A P DA ING G A
Sbjct: 132 -PHAALYDEDDENTIITLADWYH-----IPAPSIQGAAQP---DATLING-KGRYVGGPA 181
Query: 210 KDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQ 269
+ + V+ GK Y +RLI+ + + FSI H +T+++VD + D L I GQ
Sbjct: 182 AELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQ 241
Query: 270 TTNILLKAKPSYPNATFLMSARPYATGQ---GTFDNSTVAGILEYEAPAKFPRSSTVSIK 326
+ +L A + P + + A+P GTF N + IL Y A +++ +
Sbjct: 242 RYSFVLDA--NQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPN 299
Query: 327 KLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQ 386
L + L AL D A P VN RF G
Sbjct: 300 PAQLNEADLHALIDPAA-------------PGIPTPGAADVNLRFQLGFSGG-------- 338
Query: 387 TCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNN 446
F + TA + PS P + +G N
Sbjct: 339 ------------------RFTINGTAY--------------ESPSVPTLLQIMSGAQSAN 366
Query: 447 TSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKN 506
+ G+ V LP N VELV+ LG HP HLHG F V+ S
Sbjct: 367 DLLPAGS-VYELPRNQVVELVVP-AGVLGG-PHPFHLHGHAFSVV--------RSAGSST 415
Query: 507 FNLIDPVERNTVGVP-SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
+N ++PV+R+ V + +G V IRF DNPG WF HCH E H+ GL + + N +
Sbjct: 416 YNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVD 475
Query: 566 QKLPP 570
PP
Sbjct: 476 ANNPP 480
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 158/545 (28%), Positives = 224/545 (41%), Gaps = 93/545 (17%)
Query: 40 NVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLS 94
NV+ T++ I VNG GP I + D + VVN + N SIHWHG+ Q +
Sbjct: 15 NVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGT 73
Query: 95 GWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIFPKRGVP 153
WADG + QCPI G +++Y FT +G GT ++H+H + GP+VI+
Sbjct: 74 NWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDND-- 131
Query: 154 YPFPKPYKE----VPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSA 209
P Y E I +W++ I S+Q A P DA ING G A
Sbjct: 132 -PHAALYDEDDENTIITLADWYH-----IPAPSIQGAAQP---DATLING-KGRYVGGPA 181
Query: 210 KDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQ 269
+ + V+ GK Y +RLI+ + + FSI H +T+++VD + D L I GQ
Sbjct: 182 AELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQ 241
Query: 270 TTNILLKAKPSYPNATFLMSARPYATGQ---GTFDNSTVAGILEYEAPAKFPRSSTVSIK 326
+ +L A + P + + A+P GTF N + IL Y A +++ +
Sbjct: 242 RYSFVLDA--NQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPN 299
Query: 327 KLPLMKPTLPALNDTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQ 386
L + L AL D A P VN RF G
Sbjct: 300 PAQLNEADLHALIDPAA-------------PGIPTPGAADVNLRFQLGFSGG-------- 338
Query: 387 TCQGPNNSTKFAASVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNN 446
F + TA + PS P + +G N
Sbjct: 339 ------------------RFTINGTAY--------------ESPSVPTLLQIMSGAQSAN 366
Query: 447 TSVMNGTKVVVLPFNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKN 506
+ G+ V LP N VELV+ LG HP HLHG F V+ S
Sbjct: 367 DLLPAGS-VYELPRNQVVELVVP-AGVLGG-PHPFHLHGHAFSVV--------RSAGSST 415
Query: 507 FNLIDPVERNTVGVP-SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
+N ++PV+R+ V + +G V IRF DNPG WF HCH E H+ GL + + N +
Sbjct: 416 YNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVD 475
Query: 566 QKLPP 570
PP
Sbjct: 476 ANNPP 480
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 140/527 (26%), Positives = 221/527 (41%), Gaps = 85/527 (16%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNN-----ISIHWHGIRQLLSGWADGPAY 102
+S +T G P I DR I V++ + + SIHWHG Q + DGPA+
Sbjct: 43 RSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAF 102
Query: 103 ITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKPY 160
+ QCPI +S+VY+F + GQ GT ++H+H+S + G V++ P +
Sbjct: 103 VNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDD 162
Query: 161 KEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPG 220
I +W+++ + + + D INGL N SA + V+ G
Sbjct: 163 ASTVITIADWYHSLSTVLFPNPNKAPP---APDTTLINGLGRNSANPSAGQLAVVSVQSG 219
Query: 221 KTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPS 280
K Y R+++ + FSI H +TV++VD + + D L I GQ +++++A +
Sbjct: 220 KRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQA 279
Query: 281 YPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALND 340
N + + A P + G+ F + I Y+ A + +PT +
Sbjct: 280 VGN--YWIRANP-SNGRNGFTGGINSAIFRYQGAA--------------VAEPTTSQNSG 322
Query: 341 TAFAFNYTTRLRSLANAQFPAN-VPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
TA L L N P N VP + +G N+T
Sbjct: 323 TALN---EANLIPLINPGAPGNPVPGGADINLNLRIG---------------RNATTADF 364
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
++N FI P+ +L G T PN+ ++ G V+ LP
Sbjct: 365 TINGAPFIPPTVPVLLQILSGV--------------------TNPND--LLPGGAVISLP 402
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVG 519
N +E+ S G +HP HLHG NF V+ + +N ++PV R+ V
Sbjct: 403 ANQVIEI-----SIPGGGNHPFHLHGHNFDVV--------RTPGSSVYNYVNPVRRDVVS 449
Query: 520 VPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
+ GG V RF DNPG WF+HCH + H+ GL +V ++PN
Sbjct: 450 IGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLA---VVFAEDIPN 493
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 141/535 (26%), Positives = 229/535 (42%), Gaps = 86/535 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI-----SIHWHGIRQLLSGWADGPA 101
++ + VNG PGP + GDR + V++++ N+ S+HWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 102 YITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIF-PKRGVPYPFPKP 159
+I QCPI G S++Y+F + Q GT ++H+H+S + GP V++ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 160 YKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKP 219
+ I +W++ T A + + PN +D+ ING + SA+ + + V
Sbjct: 141 NDDTTITLADWYH--TAAKLGPAF-----PNGADSTLINGKGRAPSDSSAQLSV-VSVTK 192
Query: 220 GKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKP 279
GK RL++ + + FSI H+ T+++ D++ + TD + I Q + L A
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLNANQ 252
Query: 280 SYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSIKKLPLMKPTLPALN 339
+ N + + A P G F+ + IL Y+ ++ S PL + L L
Sbjct: 253 AVDN--YWIRANPNFGNVG-FNGGINSAILRYDGAPAVEPTTNQSTSTQPLNETNLHPLV 309
Query: 340 DTAFAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAA 399
T P P + G + + A
Sbjct: 310 ST---------------------------------------PVPGSPAAGGVDKAINMAF 330
Query: 400 SVNNFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLP 459
+ N +F + NG T PS P++ +G + +G+ V LP
Sbjct: 331 NFNGSNFFI-------------NGASFTP-PSVPVLLQILSGAQTAQDLLPSGS-VXTLP 375
Query: 460 FNASVELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTV- 518
NAS+E+ T+ HP HLHG F V+ S +N +P+ R+ V
Sbjct: 376 SNASIEISFPATAAAPGAPHPFHLHGHVFAVVR--------SAGSTVYNYSNPIFRDVVS 427
Query: 519 -GVPSGGW-VAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQKLPPP 571
G P+ G V IRF +NPG WF+HCH + H+ G +V ++P+ K P
Sbjct: 428 TGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA---VVQAEDVPDVKATNP 479
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 154/299 (51%), Gaps = 22/299 (7%)
Query: 28 ITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNN-ISIHW 86
+TR Y ++ +T +T+S +T NG PGP I+A GD LII V N++ +N SIHW
Sbjct: 66 VTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHW 125
Query: 87 HGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLV 145
HGIRQL S DG +TQCPI G + Y F ++ Q GT ++H+H S ++GPL+
Sbjct: 126 HGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLI 184
Query: 146 IFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLY 205
I Y ++V +IF + + ++ I + + GA P + + +NG +
Sbjct: 185 INGPATADYD-----EDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGTN--TF 236
Query: 206 NCSAK---------DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIK 256
+CSA F+L G Y LRLIN ++ F+I NH++TV+ D + I
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 257 SFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPA 315
+ TD LLI GQ +++++A + N + + T + + GIL Y++ +
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADN--YWIRGNWGTTCSTNNEAANATGILRYDSSS 353
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSG 523
V V++D + G HP+HLHG +FF++ Q ++ + FNL++P R+ +P
Sbjct: 449 VVYVIEDLTGFGIW-HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGN 507
Query: 524 GWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWI 557
G++AI F+ DNPG W +HCH H S G+ M ++
Sbjct: 508 GYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQFV 541
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 154/299 (51%), Gaps = 22/299 (7%)
Query: 28 ITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNN-ISIHW 86
+TR Y ++ +T +T+S +T NG PGP I+A GD LII V N++ +N SIHW
Sbjct: 66 VTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHW 125
Query: 87 HGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLV 145
HGIRQL S DG +TQCPI G + Y F ++ Q GT ++H+H S ++GPL+
Sbjct: 126 HGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLI 184
Query: 146 IFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLY 205
I Y ++V +IF + + ++ I + + GA P + + +NG +
Sbjct: 185 INGPATADYD-----EDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGTN--TF 236
Query: 206 NCSAK---------DTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIK 256
+CSA F+L G Y LRLIN ++ F+I NH++TV+ D + I
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 257 SFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEAPA 315
+ TD LLI GQ +++++A + N + + T + + GIL Y++ +
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADN--YWIRGNWGTTCSTNNEAANATGILRYDSSS 353
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSG 523
V V++D + G HP+HLHG +FF++ Q ++ + FNL++P R+ +P
Sbjct: 449 VVYVIEDLTGFGIW-HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGN 507
Query: 524 GWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWI 557
G++AI F+ DNPG W +HCH H S GL M ++
Sbjct: 508 GYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFV 541
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 143/526 (27%), Positives = 219/526 (41%), Gaps = 78/526 (14%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNH-VPNNISIHWHGIRQLLSGWADGPAYITQC 106
+ ++ +NG GP IVA GD + + V+N+ V N SIHWHGI Q + DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 107 PIQ-TGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIFPKRGVPYPFPKPYKEVP 164
PI G Y + + Q GT ++H+H S V G + I +PY P
Sbjct: 115 PIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDID--LGVFP 171
Query: 165 IIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLP-GPLYNCSAKDTFKLKVKPGKTY 223
I + AD Q+ P SD ING P N + + PGK +
Sbjct: 172 ITDYYYRAADDLVHFTQN----NAPPFSDNVLINGTAVNP--NTGEGQYANVTLTPGKRH 225
Query: 224 LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPN 283
LR++N + + S+ NH++TV+ D + + + D L + GQ ++++ A + N
Sbjct: 226 RLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDN 285
Query: 284 ATFLMSARPYATGQGTFDNSTVAGILEYE-APAKFPRSSTVSIKKLPLMKPTLPALNDTA 342
F ++ A G+ N A I Y AP P P+ L L+
Sbjct: 286 YWFNVTFGGQAACGGSL-NPHPAAIFHYAGAPGGLPTDEGTP----PVDHQCLDTLD--- 337
Query: 343 FAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVN 402
+R + VP++V P N + P+N+ A
Sbjct: 338 --------VRPV--------VPRSV---------------PVNSFVKRPDNTLPVALD-- 364
Query: 403 NFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPF-- 460
L T L G + D+ P+I + TG NTS +V +
Sbjct: 365 -----LTGTPLFVWKVNGSD--INVDW-GKPIIDYILTG----NTSYPVSDNIVQVDAVD 412
Query: 461 NASVELVMQDTSTLGAESHPLHLHGFNFFVIG---------QGFGNYDPSKDRKNFNLID 511
+ L+ D + HP+HLHG +F V+G Q +DP+ D N +
Sbjct: 413 QWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDN 472
Query: 512 PVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWI 557
P R+T +P+GGW+ + FR DNPG W HCH H+S GL + ++
Sbjct: 473 PPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 143/526 (27%), Positives = 219/526 (41%), Gaps = 78/526 (14%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNH-VPNNISIHWHGIRQLLSGWADGPAYITQC 106
+ ++ +NG GP IVA GD + + V+N+ V N SIHWHGI Q + DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 107 PIQ-TGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIFPKRGVPYPFPKPYKEVP 164
PI G Y + + Q GT ++H+H S V G + I +PY P
Sbjct: 115 PIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDID--LGVFP 171
Query: 165 IIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLP-GPLYNCSAKDTFKLKVKPGKTY 223
I + AD Q+ P SD ING P N + + PGK +
Sbjct: 172 ITDYYYRAADDLVHFTQN----NAPPFSDNVLINGTAVNP--NTGEGQYANVTLTPGKRH 225
Query: 224 LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPN 283
LR++N + + S+ NH++TV+ D + + + D L + GQ ++++ A + N
Sbjct: 226 RLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDN 285
Query: 284 ATFLMSARPYATGQGTFDNSTVAGILEYE-APAKFPRSSTVSIKKLPLMKPTLPALNDTA 342
F ++ A G+ N A I Y AP P P+ L L+
Sbjct: 286 YWFNVTFGGQAACGGSL-NPHPAAIFHYAGAPGGLPTDEGTP----PVDHQCLDTLD--- 337
Query: 343 FAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVN 402
+R + VP++V P N + P+N+ A
Sbjct: 338 --------VRPV--------VPRSV---------------PVNSFVKRPDNTLPVALD-- 364
Query: 403 NFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPF-- 460
L T L G + D+ P+I + TG NTS +V +
Sbjct: 365 -----LTGTPLFVWKVNGSD--INVDW-GKPIIDYILTG----NTSYPVSDNIVQVDAVD 412
Query: 461 NASVELVMQDTSTLGAESHPLHLHGFNFFVIG---------QGFGNYDPSKDRKNFNLID 511
+ L+ D + HP+HLHG +F V+G Q +DP+ D N +
Sbjct: 413 QWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDN 472
Query: 512 PVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWI 557
P R+T +P+GGW+ + FR DNPG W HCH H+S GL + ++
Sbjct: 473 PPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 143/526 (27%), Positives = 219/526 (41%), Gaps = 78/526 (14%)
Query: 48 KSIITVNGQFPGPRIVAREGDRLIIKVVNH-VPNNISIHWHGIRQLLSGWADGPAYITQC 106
+ ++ +NG GP IVA GD + + V+N+ V N SIHWHGI Q + DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTEC 114
Query: 107 PIQ-TGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIFPKRGVPYPFPKPYKEVP 164
PI G Y + + Q GT ++H+H S V G + I +PY P
Sbjct: 115 PIPPKGGQRTYRWR-ARQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDID--LGVFP 171
Query: 165 IIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLP-GPLYNCSAKDTFKLKVKPGKTY 223
I + AD Q+ P SD ING P N + + PGK +
Sbjct: 172 ITDYYYRAADDLVHFTQN----NAPPFSDNVLINGTAVNP--NTGEGQYANVTLTPGKRH 225
Query: 224 LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPN 283
LR++N + + S+ NH++TV+ D + + + D L + GQ ++++ A + N
Sbjct: 226 RLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDN 285
Query: 284 ATFLMSARPYATGQGTFDNSTVAGILEYE-APAKFPRSSTVSIKKLPLMKPTLPALNDTA 342
F ++ A G+ N A I Y AP P P+ L L+
Sbjct: 286 YWFNVTFGGQAACGGSL-NPHPAAIFHYAGAPGGLPTDEGTP----PVDHQCLDTLD--- 337
Query: 343 FAFNYTTRLRSLANAQFPANVPQTVNKRFFFTVGLGTNPCPKNQTCQGPNNSTKFAASVN 402
+R + VP++V P N + P+N+ A
Sbjct: 338 --------VRPV--------VPRSV---------------PVNSFVKRPDNTLPVALD-- 364
Query: 403 NFSFILPSTALLQAHFFGQNGVYTTDFPSTPLIKFNYTGTPPNNTSVMNGTKVVVLPF-- 460
L T L G + D+ P+I + TG NTS +V +
Sbjct: 365 -----LTGTPLFVWKVNGSD--INVDW-GKPIIDYILTG----NTSYPVSDNIVQVDAVD 412
Query: 461 NASVELVMQDTSTLGAESHPLHLHGFNFFVIG---------QGFGNYDPSKDRKNFNLID 511
+ L+ D + HP+HLHG +F V+G Q +DP+ D N +
Sbjct: 413 QWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDN 472
Query: 512 PVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWI 557
P R+T +P+GGW+ + FR DNPG W HCH H+S GL + ++
Sbjct: 473 PPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPN-NISIHWHGIRQLLSGWADGPAYITQ 105
++ +IT NGQFP P I +GDR+ I + N + N N S+H+HG+ Q + DG ++TQ
Sbjct: 21 SRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQ 80
Query: 106 CPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKPYKEVPI 165
CPI G + +YNFT+ GT ++H+H L I PY + +E+ +
Sbjct: 81 CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSFPYDYD---EELSL 137
Query: 166 IFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKL--KVKPGKTY 223
EW+ L T + Y G N +T L +V+P TY
Sbjct: 138 SLSEWY---------HDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMNLTWEVQPDTTY 188
Query: 224 LLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAK 278
LLR++N +F I +H +TVV++D I + TD+L IT Q +L+ K
Sbjct: 189 LLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTK 243
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 440 TGTPPNNTSVM-NGTKVVVLPFNASVELVM--QDTSTLGAESHPLHLHGFNFFVI----- 491
+G NN+ + + T +L + VE+V+ QDT T HP HLHG F I
Sbjct: 355 SGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDTGT-----HPFHLHGHAFQTIQRDRT 409
Query: 492 -GQGFGNYDPSKDRKNFNLID--PVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVH 547
G S D N P+ R+T+ V IRF+ADNPGVWF HCH E H
Sbjct: 410 YDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 132/274 (48%), Gaps = 16/274 (5%)
Query: 50 IITVNGQFPGPRIVAREGDRLIIKVVNHVP-NNISIHWHGIRQLLSGWADGPAYITQCPI 108
++ VN + GP I A GD + + V+N++ N S+HWHG+RQL + + DG +T+CPI
Sbjct: 98 VMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPI 157
Query: 109 Q-TGQSYVYNFTISGQRGTLFWHAHISWLRAT-VYGPLVIFPKRGVPYPFPKPYKEVPII 166
G Y F + Q GT ++H+H S V G + I +PY P++
Sbjct: 158 PPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGPASLPYDID--LGVFPLM 214
Query: 167 FGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLR 226
+++ + +++ + GA P SD NG A + + + PGK + LR
Sbjct: 215 --DYYYRSADELVHFTQSNGAPP--SDNVLFNGT-ARHPETGAGQWYNVTLTPGKRHRLR 269
Query: 227 LINAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATF 286
+IN + ++ S+ H++TV+ D + + +F L + GQ ++ + A N F
Sbjct: 270 IINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPVGNYWF 329
Query: 287 LMSARPYATGQ-GTFDNSTVAGILEYE-APAKFP 318
++ + G G+ +N A I Y+ APA P
Sbjct: 330 NVT---FGDGLCGSSNNKFPAAIFRYQGAPATLP 360
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 479 HPLHLHGFNFFVIGQGFGN---------YDPSKDRKNFNLIDPVERNTVGVPSGGWVAIR 529
HP+HLHG +F V+G+ +DP+KD +PV R+ +P+GGW+ +
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 530 FRADNPGVWFMHCHFEVHISWGLKMAWIVLNGNLPNQ 566
F+ DNPG W HCH H+S GL + ++ +L Q
Sbjct: 532 FKTDNPGAWLFHCHIAWHVSGGLSVDFLERPNDLRTQ 568
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 32/293 (10%)
Query: 33 KFDIKMQNV------TRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHW 86
+FD+ +++ R HT NGQ P P I EGD + + V N +IHW
Sbjct: 4 EFDLSIEDTRIVLVGKRDFHT---FAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHW 60
Query: 87 HGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHIS-----WLRATVY 141
HG+ Q + +DG + TQ I+ G ++ Y F + GT+++H H++ +R ++
Sbjct: 61 HGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFK-AEPAGTMWYHCHVNVNEHVTMRG-MW 118
Query: 142 GPLVIFPKRGVPYPFPKPY-KEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGL 200
GPL++ PK P P K K+ ++ +W + + N+ + G +V D YTIN
Sbjct: 119 GPLIVEPKN--PLPIEKTVTKDYILMLSDWVS----SWANKPGEGGIPGDVFDYYTINAK 172
Query: 201 PGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKSFQT 260
P +T ++VK G LRLI A + + + S K +
Sbjct: 173 SFP-------ETQPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFKDGFPLDKPIKG 225
Query: 261 DILLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEYEA 313
D +LI PG+ +++L P + T G + + +EYE
Sbjct: 226 DTVLIGPGERYDVILNM--DNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEE 276
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 504 RKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVWFMHCHFEVHISWGLK 553
+ F L P++ +TV + G + DNPG+W +H H + H + G K
Sbjct: 214 KDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDK 263
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 37/256 (14%)
Query: 49 SIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPI 108
+++T G FPGP + R D + + + N +P ++HWHG+ +S D P I
Sbjct: 36 TLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLP--ISPKVDDPF----LEI 89
Query: 109 QTGQSYVYNFTISGQRGTLFW-HAHIS-----WLRATVYGPLVIFPKRGVPYPFPKPYKE 162
G+S+ Y FT+ + FW H H+ L A + G LV+
Sbjct: 90 PPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVV----------ESSLDA 139
Query: 163 VPIIFGEWFNADTEAII--NQSLQTGAGPNVSDAYTINGLPGP--LYNCSAKDTFKLKVK 218
+P E A+ ++ + +LQ G + +NG G L N + + T V
Sbjct: 140 IP----ELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTL---VA 192
Query: 219 PGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS-FQTDILLITPGQTTNILLKA 277
T LRL+NA+ ++ +H + ++ D +++ + LL+ PG+ +L++
Sbjct: 193 QKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRL 252
Query: 278 KPSYPNATFLMSARPY 293
+ FL+ A PY
Sbjct: 253 R---KEGRFLLQALPY 265
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 52 TVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTG 111
+ NG+ PGP + AREGD L I N + +IH+HG+ + DG I I G
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRAT---MDGTPGIGAGSIAPG 114
Query: 112 QSYVYNFTISGQRGTLFWHAHISWLRATV----YGPLVIFPKRGVPYPFPKPYKEVPIIF 167
QS+ Y F + GT +H H S L + YG ++ PK G P
Sbjct: 115 QSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP-------------- 159
Query: 168 GEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRL 227
AD E ++ + G + ++ Y++NGLP + F +KVK + + L
Sbjct: 160 ----PADDEMVMVMNGYNTDGGDDNEFYSVNGLPFHFMD------FPVKVKQHELVRIHL 209
Query: 228 INAALND 234
IN D
Sbjct: 210 INVLEYD 216
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 29/255 (11%)
Query: 31 HYKFDIKMQNVTRLCHTKSII-TVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGI 89
H +IK ++ + K++ T NG P P+I EGD+L I V N + +IHWHG+
Sbjct: 52 HATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGV 111
Query: 90 RQLLSGWADGPAYITQCPIQTGQSYVYNFTI-SGQRGTLFWHAHISWLRAT-----VYGP 143
+ DG + PI G+ +Y F I GT ++H H + + + G
Sbjct: 112 P--VPPDQDGSPH---DPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGA 166
Query: 144 LVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGP 203
VI K+ KE ++ + + I N +L + ING
Sbjct: 167 FVIKAKKDALSHL----KEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLING---- 218
Query: 204 LYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYI-KSFQTDI 262
FK K+K +R+ NA L I +V D I K+ +
Sbjct: 219 --------QFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEE 270
Query: 263 LLITPGQTTNILLKA 277
L ++P +L+ A
Sbjct: 271 LFLSPASRVEVLIDA 285
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 478 SHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGV 537
HP H+HG F +I + F + R+T+ V + +R + D G+
Sbjct: 406 DHPFHIHGTQFELISSKLNG---KVQKAEFRAL----RDTINVRPNEELRLRMKQDFKGL 458
Query: 538 WFMHCHFEVHISWGL 552
HCH H G+
Sbjct: 459 RMYHCHILEHEDLGM 473
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 30/229 (13%)
Query: 60 PRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADG--PAYITQCPIQTGQSYVYN 117
P I+ R G R+ + + N + +HWHG W + P++ I G+SY Y+
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHGFD---VNWHNDAHPSF----AITPGESYNYS 90
Query: 118 FTISGQRGTLFWHAHISWLRATVYG----PLVIFPKRGVPYPFPKPYKEVPIIFGEWFNA 173
F + + GT +H H L A + LVI G F ++P++ +
Sbjct: 91 FDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISDRRFI 150
Query: 174 DTEAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALN 233
+ N + + +A +NG+ ++ S G +Y LRL+N +
Sbjct: 151 GGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLS-----------GGSYRLRLVNGSNA 199
Query: 234 DELFFSIANHSVTVVDVDAIYI------KSFQTDILLITPGQTTNILLK 276
SI + VV + I + + + L + P + ++++
Sbjct: 200 RLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVE 248
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + S+ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + S+ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + S+ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWHA----HISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +HA + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHAAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++++HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEGKP 163
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEGKP 163
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 51 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 105
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 106 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPQGKP 162
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 53 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 107
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 108 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 164
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 58 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 112
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 113 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 169
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGASGTLMVLPRDGLKDPQGKP 163
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEGKP 163
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEGKP 163
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + W + + + G L++ P+ G+ P P
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDPAGAP 163
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWA-----DG 99
T +T NG PGP +V EGD + + +VN N + ++ +HG L G G
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPG 111
Query: 100 PAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKP 159
+ ++VY + G + WH + + + G L++ P+ G+ P KP
Sbjct: 112 EQATLRFKADRSGTFVY---VCAPEGMVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 106
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWHAHISWL-----RATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + + + G L++ P+ G+ P KP
Sbjct: 107 N--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPHHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNI--SIHWHGIRQLLSGWADGPAYIT 104
T +T NG PGP +V EGD + + +VN N + ++ +HG L G A +T
Sbjct: 53 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGG-----AKLT 107
Query: 105 QCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVIFPKRGVPYPFPKP 159
+ G+ F + + GT +H + G L++ P+ G+ P KP
Sbjct: 108 N--VNPGEQATLRFK-ADRSGTFVYHCTPHPFMS---GTLMVLPRDGLKDPQGKP 156
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 58 PGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYN 117
PGP I EGD L I+ N + S+H HG+ +S +DG A + + ++ G + Y
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTYT 93
Query: 118 FTIS--GQR--GTL------FWHAH---------ISWLRATVYGPLVIFPKRGV 152
+ G+R GT +WH H +R +YGP+++ K V
Sbjct: 94 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV 147
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGF--GNYDPSKDRKNFNLIDPVERNTVGVP 521
VE+VM T G H H+HG + G G DPS+ N + P +
Sbjct: 181 VEIVM---ITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDN-KITGPAD------- 229
Query: 522 SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVL--NGNLPN 565
S G+ I G W HCH + H G+ ++V +G +P
Sbjct: 230 SFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPG 275
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 40/226 (17%)
Query: 27 SITRHY--KFDIKMQNVTRLCHTKSII-----TVNGQFPGPRIVAREGDRLIIKVVNH-- 77
+I R Y K +KM+ V + + T +G PG I REGD + ++ N+
Sbjct: 30 AIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPS 89
Query: 78 --VPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHIS- 134
VP+N+ H + + A P G++ ++F + Q G +H ++
Sbjct: 90 STVPHNVDFHAATGQGGGA------AATFTAP---GRTSTFSFK-ALQPGLYIYHCAVAP 139
Query: 135 ---WLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQ----TGA 187
+ +YG +++ PK G PK KE I+ G+++ + Q LQ A
Sbjct: 140 VGMHIANGMYGLILVEPKEG----LPKVDKEFYIVQGDFYTKGKKGA--QGLQPFDMDKA 193
Query: 188 GPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALN 233
+ NG G L +A LK K G+T + + N N
Sbjct: 194 VAEQPEYVVFNGHVGALTGDNA-----LKAKAGETVRMYVGNGGPN 234
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 22/111 (19%)
Query: 58 PGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYN 117
PGP I EGD L I+ N + S+H HG+ +S +DG A + + ++ G + Y
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 131
Query: 118 FTIS--GQR--GTL------FWHAH---------ISWLRATVYGPLVIFPK 149
+ G+R GT +WH H +R +YGP+++ K
Sbjct: 132 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 182
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGF--GNYDPSKDRKNFNLIDPVERNTVGVP 521
VE+VM T G H H+HG + G G DPS+ N + P +
Sbjct: 219 VEIVM---ITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDN-KITGPAD------- 267
Query: 522 SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVL--NGNLPN 565
S G+ I G W HCH + H G+ ++V +G +P
Sbjct: 268 SFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPG 313
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 46/317 (14%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADG--PAYITQCPIQTG---QSYVYNFTISG 122
+H HG + +DG A+ ++ QTG + VY++ +
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHG--GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQ 144
Query: 123 QRGTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTE 176
QRG + W H H ++ R VY G +I + P +VP++ + +
Sbjct: 145 QRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDG 204
Query: 177 AIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDEL 236
++ S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 205 SLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTY 263
Query: 237 FFSIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYA 294
S+ N + + + +S + + + P + +I++ +Y + +++ A
Sbjct: 264 NLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFT-AYEGESIILANS--A 320
Query: 295 TGQGTFDNSTVAGILEY 311
G + T A I+++
Sbjct: 321 GCGGDVNPETDANIMQF 337
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 58 PGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYN 117
PGP I EGD L I+ N + S+H HG+ +S +DG A + + ++ G + Y
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 90
Query: 118 FTIS--GQR--GTL------FWHAH---------ISWLRATVYGPLVIFPKRGV 152
+ G+R GT +WH H +R +YGP+++ K V
Sbjct: 91 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV 144
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGF--GNYDPSKDRKNFNLIDPVERNTVGVP 521
VE+VM T G H H+HG + G G DPS+ N + P +
Sbjct: 178 VEIVM---ITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDN-KITGPAD------- 226
Query: 522 SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVL--NGNLPN 565
S G+ I G W HCH + H G+ ++V +G +P
Sbjct: 227 SFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPG 272
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 46/317 (14%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADG--PAYITQCPIQTG---QSYVYNFTISG 122
+H HG + +DG A+ ++ QTG + VY++ +
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHG--GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQ 144
Query: 123 QRGTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTE 176
QRG + W H H ++ R VY G +I + P +VP++ + +
Sbjct: 145 QRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDG 204
Query: 177 AIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDEL 236
++ S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 205 SLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTY 263
Query: 237 FFSIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYA 294
S+ N + + + +S + + + P + +I++ +Y + +++ A
Sbjct: 264 NLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFT-AYEGESIILANS--A 320
Query: 295 TGQGTFDNSTVAGILEY 311
G + T A I+++
Sbjct: 321 GCGGDVNPETDANIMQF 337
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADG--PAYITQCPIQTG---QSYVYNFTISG 122
+H HG + +DG A+ ++ QTG + VY++ +
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHG--GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQ 144
Query: 123 QRGTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTE 176
QRG + W H H ++ R VY G +I + P +VP++ + +
Sbjct: 145 QRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDG 204
Query: 177 AIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDEL 236
++ S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 205 SLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTY 263
Query: 237 FFSIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILL 275
S+ N + + + +S + + + P + +I++
Sbjct: 264 NLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADG--PAYITQCPIQTG---QSYVYNFTISG 122
+H HG + +DG A+ ++ QTG + VY++ +
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHG--GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQ 144
Query: 123 QRGTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTE 176
QRG + W H H ++ R VY G +I + P +VP++ + +
Sbjct: 145 QRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDG 204
Query: 177 AIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDEL 236
++ S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 205 SLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTY 263
Query: 237 FFSIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILL 275
S+ N + + + +S + + + P + +I++
Sbjct: 264 NLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADG--PAYITQCPIQTG---QSYVYNFTISG 122
+H HG + +DG A+ ++ QTG + VY++ +
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHG--GVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQ 144
Query: 123 QRGTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTE 176
QRG + W H H ++ R VY G +I + P +VP++ + +
Sbjct: 145 QRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDG 204
Query: 177 AIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDEL 236
++ S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 205 SLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTY 263
Query: 237 FFSIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILL 275
S+ N + + + +S + + + P + +I++
Sbjct: 264 NLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 475 GAESHPLHLHGFNFF--VIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRA 532
G+ H HLHG + G YDPS LID + N GV S G+ I
Sbjct: 208 GSNFHTFHLHGHRWLDNRTGMRTSEYDPSP------LIDIKDLNP-GV-SFGFQVIAGEG 259
Query: 533 DNPGVWFMHCHFEVHISWGLKMAWIVLN--GNLP 564
PG+W HCH + H G+ ++V N G +P
Sbjct: 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGTMP 293
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 58 PGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYN 117
PGP + EGD L I +VN +S+H HG+ ++ +DG + + GQ+ Y
Sbjct: 56 PGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYDVN--SDG-TLMNGSAVMPGQTRRYT 112
Query: 118 FTISGQRGTLFWHAHISWLRA 138
W +H+ + RA
Sbjct: 113 -----------WRSHVGYRRA 122
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 123/315 (39%), Gaps = 42/315 (13%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADGPAYITQCPIQTG---QSYVYNFTISGQR 124
+H HG A+ ++ QTG + VY++ + QR
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHGGVTPDDSAGYPEAWFSKDFEQTGPYFKREVYHYP-NQQR 146
Query: 125 GTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAI 178
G + W H H ++ R VY G +I + P +VP++ + + ++
Sbjct: 147 GAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSL 206
Query: 179 INQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFF 238
S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 207 FYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNL 265
Query: 239 SIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATG 296
S+ N + + + +S + + + P + +I++ +Y + +++ A
Sbjct: 266 SLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFT-AYEGESIILANS--AGC 322
Query: 297 QGTFDNSTVAGILEY 311
G + T A I+++
Sbjct: 323 GGDVNPETDANIMQF 337
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 58 PGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQSYVYN 117
PGP I EGD L I+ N + S+H HG+ +S +DG A + + ++ G + Y
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEIS--SDGTA-MNKSDVEPGGTRTYT 94
Query: 118 FTIS--GQR--GTL------FWHAH---------ISWLRATVYGPLVIFPKRGV 152
+ G+R GT +WH H +R +YGP+++ K V
Sbjct: 95 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV 148
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGF--GNYDPSKDRKNFNLIDPVERNTVGVP 521
VE+VM T G H H+HG + G G DPS+ N + P +
Sbjct: 182 VEIVM---ITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDN-KITGPAD------- 230
Query: 522 SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVL--NGNLPN 565
S G+ I G W HCH + H G+ ++V +G +P
Sbjct: 231 SFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPG 276
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 466
Query: 537 VWFMHCHFEVHISWGLKMAWIVLNGN 562
+ HCH H G+ + + VL G+
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVLQGD 492
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 466
Query: 537 VWFMHCHFEVHISWGLKMAWIVLNGN 562
+ HCH H G+ + + VL G+
Sbjct: 467 AYMAHCHLLEHDDTGMMLGFTVLQGD 492
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 466
Query: 537 VWFMHCHFEVHISWGLKMAWIVLNGN 562
+ HCH H G+ + + VL G+
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVLQGD 492
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 119/289 (41%), Gaps = 38/289 (13%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPN------------------NISIHWHGIRQLLSG 95
NG FPGP I + + + +K +N++P+ +H HG +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHG--GVTPD 109
Query: 96 WADG--PAYITQCPIQTG---QSYVYNFTISGQRGTLFW-HAH-ISWLRATVY----GPL 144
+DG A+ ++ QTG + VY++ + QRG + W H H ++ R VY G
Sbjct: 110 DSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVGAY 168
Query: 145 VIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGPL 204
+I + P +VP++ + + ++ S P++ + + G
Sbjct: 169 IIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGET 228
Query: 205 YNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHS--VTVVDVDAIYIKSFQTDI 262
+ K L+V+P K Y R+INA+ S+ N + + + +S + +
Sbjct: 229 ILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNS 287
Query: 263 LLITPGQTTNILLKAKPSYPNATFLMSARPYATGQGTFDNSTVAGILEY 311
+ P + +I++ +Y + +++ A G + T A I+++
Sbjct: 288 FSLAPAERYDIIIDFT-AYEGESIILANS--AGCGGDVNPETDANIMQF 333
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 108/279 (38%), Gaps = 39/279 (13%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADGPAYITQCPIQTG---QSYVYNFTISGQR 124
+H HG A+ ++ QTG + VY++ + QR
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHGGVTPDDSEGYPEAWFSKDFEQTGPYFKREVYHYP-NQQR 146
Query: 125 GTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAI 178
G + W H H ++ R VY G +I + P +VP++ + + ++
Sbjct: 147 GAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSL 206
Query: 179 INQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFF 238
S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 207 FYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNL 265
Query: 239 SIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILL 275
S+ N + + + +S + + + P + +I++
Sbjct: 266 SLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIII 304
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 123/315 (39%), Gaps = 42/315 (13%)
Query: 34 FDIKMQNVTRLCHTK----SIITVNGQFPGPRIVAREGDRLIIKVVNHVPN--------- 80
+++ M+ T H + NG FPGP I + + + +K +N++P+
Sbjct: 28 YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHT 87
Query: 81 -------------NISIHWHGIRQLLSGWADGPAYITQCPIQTG---QSYVYNFTISGQR 124
+H HG A+ ++ QTG + VY++ + QR
Sbjct: 88 IHHSDSQHEEPEVKTVVHLHGGVTPDDSNGYPEAWFSKDFEQTGPYFKREVYHYP-NQQR 146
Query: 125 GTLFW-HAH-ISWLRATVY----GPLVIFPKRGVPYPFPKPYKEVPIIFGEWFNADTEAI 178
G + W H H ++ R VY G +I + P +VP++ + + ++
Sbjct: 147 GAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSL 206
Query: 179 INQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFF 238
S P++ + + G + K L+V+P K Y R+INA+
Sbjct: 207 FYPSAPENPSPSLPNPSIVPAFCGETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNL 265
Query: 239 SIANHS--VTVVDVDAIYIKSFQTDILLITPGQTTNILLKAKPSYPNATFLMSARPYATG 296
S+ N + + + +S + + + P + +I++ +Y + +++ A
Sbjct: 266 SLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFT-AYEGESIILANS--AGC 322
Query: 297 QGTFDNSTVAGILEY 311
G + T A I+++
Sbjct: 323 GGDVNPETDANIMQF 337
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 57 FPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTG--QSY 114
PGP I EGD L I+ N + +S+H HG+ +S +DG ++ ++ G ++Y
Sbjct: 39 IPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDGTKQ-SRSDVEPGGTRTY 95
Query: 115 VYNFTISGQR--GTL------FWHAH---------ISWLRATVYGPLVIFPK 149
+ + G+R GT +WH H +R +YGP+++ K
Sbjct: 96 TWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 147
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 464 VELVMQDTSTLGAESHPLHLHGFNFFVIGQGF--GNYDPSKDRKNFNLIDPVERNTVGVP 521
VE VM T G H HLHG + G G DPS+ N + P +
Sbjct: 184 VEFVM---ITHGEYYHTFHLHGHRWADNRTGMLTGPDDPSQVIDN-KICGPAD------- 232
Query: 522 SGGWVAIRFRADNPGVWFMHCHFEVHISWGLKMAWIVL--NGNLPN 565
S G+ I G W HCH + H G+ ++V +G +P
Sbjct: 233 SFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPG 278
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 47 TKSIITVNGQFPGPRIVAREGDRLIIKVV----NHVPNNISIHWHGIRQLLSGWADGPAY 102
T +T NG PGP +V EGD + + +V N +P+N+ H +
Sbjct: 48 TAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGALGGA-------- 99
Query: 103 ITQCPIQTGQSYVYNFTISGQRGTLFWH----AHISW-LRATVYGPLVIFPKRGV 152
+ GQ V F + + GT +H + W + + + G L++ P+ G+
Sbjct: 100 -GLTQVVPGQEAVLRFK-ADRSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDGL 152
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVW 538
H +H HG +F +G + D + G + + PG+W
Sbjct: 975 HTVHFHGHSFQYKHRGVYSSD-----------------VFDIFPGTYQTLEMFPRTPGIW 1017
Query: 539 FMHCHFEVHISWGLKMAWIVLN 560
+HCH HI G++ + VL
Sbjct: 1018 LLHCHVTDHIHAGMETTYTVLQ 1039
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPGVW 538
H +H HG +F +G + D + G + + PG+W
Sbjct: 994 HTVHFHGHSFQYKHRGVYSSD-----------------VFDIFPGTYQTLEMFPRTPGIW 1036
Query: 539 FMHCHFEVHISWGLKMAWIVLN 560
+HCH HI G++ + VL
Sbjct: 1037 LLHCHVTDHIHAGMETTYTVLQ 1058
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 466
Query: 537 VWFMHCHFEVHISWGLKMAWIV 558
+ HCH H G+ + + V
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTV 488
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 466
Query: 537 VWFMHCHFEVHISWGLKMAWIVLNGNLPN 565
+ HCH H G+ + + V + PN
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVSAWSHPN 495
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 29/231 (12%)
Query: 58 PGPRIVAREGDRLIIKVVNH----VPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
PG I REGD + + NH +P+NI +H ++G G P G +
Sbjct: 58 PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH------AVTGPGGGAESSFTAP---GHT 108
Query: 114 YVYNFTISGQRGTLFWHAHIS----WLRATVYGPLVIFPKRGVPYPFPKPYKEVPIIFGE 169
+NF + G +H + + +YG +++ PK G+ P + Y ++ G+
Sbjct: 109 STFNFK-ALNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGLA-PVDREYY---LVQGD 163
Query: 170 WFNADT--EAIINQSLQTGAGPNVSDAYTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRL 227
++ EA + A +D NG G S D L K G+T L +
Sbjct: 164 FYTKGEFGEAGLQPFDMAKAIDEDADYVVFNGSVG-----STTDENSLTAKVGETVRLYI 218
Query: 228 INAALNDELFFSIANHSVTVVDVDAIYIKSFQTDILLITPGQTTNILLKAK 278
N N F + V V+ +K+ LI G + K +
Sbjct: 219 GNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVE 269
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 367 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 418
Query: 537 VWFMHCHFEVHISWGLKMAWIV 558
+ HCH H G+ + + V
Sbjct: 419 AYMAHCHLLEHEDTGMMLGFTV 440
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 54 NGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPIQTGQS 113
NG GP + + G + + + N + ++HWHG+ + G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 114 YVYNFTISGQRGTLFWHAHI-----SWLRATVYGPLVIFPKRGVPYPFPKPY--KEVPII 166
+ T ++H H + + G +VI + PK + +VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 167 FGE-WFNADTEAIINQSLQTGAGPNVSDAYTING 199
+ F+AD + + T A D NG
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG 190
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 479 HPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIRFRADNPG-- 536
HP H+HG F ++ + P+ R + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNV------SEVLVKFNHDAPKEH 466
Query: 537 VWFMHCHFEVHISWGLKMAWIVLNGN 562
+ H H H G+ + + VL G+
Sbjct: 467 AYMAHSHLLEHEDTGMMLGFTVLQGD 492
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 30/230 (13%)
Query: 31 HYKFDIK--MQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHG 88
+Y+ +IK V + ++ +G PGP G +++ +N+ S+H HG
Sbjct: 38 YYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHG 97
Query: 89 --IRQLLSGWADGPAYITQCPIQTGQSYVYNFTISGQRGTLFWHAHISWLRATVYGPLVI 146
R GWA+ IT+ G Y + TL++H H + A
Sbjct: 98 SFSRAAFDGWAED---ITEP----GSFKDYYYPNRQSARTLWYHDHAMHITAE-----NA 145
Query: 147 FPKRGVPYPFPKPYKE---VPIIFGEWFNADTEAIINQSLQTGAGPNVSDAYTINGLPGP 203
+ + Y P ++ +P +GE+ D I+ T G V+ +N G
Sbjct: 146 YRGQAGLYMLTDPAEDALNLPSGYGEF---DIPMILTSKQYTANGNLVTTNGELNSFWGD 202
Query: 204 LYNCSAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAI 253
+ + + + V+P K Y R ++AA++ A D DAI
Sbjct: 203 VIHVNGQPWPFKNVEPRK-YRFRFLDAAVSRSFGLYFA-------DTDAI 244
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 478 SHPLHLHGFNFFVIGQGFGNYDPSKDRKNFNLIDPVERNTVGVPSGGWVAIR-------F 530
+HP+H+H +F VI + GN N + P E G+ W+ R
Sbjct: 397 THPIHIHLVDFKVISRTSGN--------NARTVMPYES---GLKDVVWLGRRETVVVEAH 445
Query: 531 RADNPGVWFMHCHFEVHISWGLKMAW 556
A PGV+ HCH +H + A+
Sbjct: 446 YAPFPGVYMFHCHNLIHEDHDMMAAF 471
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 28 ITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWH 87
I R YK M T+ I GP + GD L+I N +I+ H
Sbjct: 420 IGRKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPH 479
Query: 88 GIRQLLSGWA----DGPAYITQCPIQTGQSYVYNFTISGQRG---------TLFWHAHIS 134
GI + ++ G ++ PI G+ + Y +T++ + G T ++ + ++
Sbjct: 480 GITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVN 539
Query: 135 WLR---ATVYGPLVIFPKRGV 152
R + + GPL+I K V
Sbjct: 540 MERDLASGLIGPLLICYKESV 560
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 16/141 (11%)
Query: 28 ITRHYKFDIKMQNVTRLCHTKSIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWH 87
I R YK M T+ I GP + GD L+I N +I+ H
Sbjct: 419 IGRKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPH 478
Query: 88 GIRQLLSGWA----DGPAYITQCPIQTGQSYVYNFTISGQRG---------TLFWHAHIS 134
GI + ++ G ++ PI G+ + Y +T++ + G T ++ + ++
Sbjct: 479 GITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVN 538
Query: 135 WLR---ATVYGPLVIFPKRGV 152
R + + GPL+I K V
Sbjct: 539 MERDLASGLIGPLLICYKESV 559
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 59 GPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQC-PIQT------- 110
GP + A GD + + N +SIH GI+ S +++G +Y P++
Sbjct: 59 GPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIK--YSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 111 GQSYVYNFTISGQRG 125
GQ Y Y + IS G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 199 GLPGPLYNC-SAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257
G+PG C S+ D F L PGKT ++ AL F + VTV+ V +I ++
Sbjct: 189 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRG 247
Query: 258 FQTDI 262
F D+
Sbjct: 248 FDQDM 252
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 199 GLPGPLYNC-SAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257
G+PG C S+ D F L PGKT ++ AL F + VTV+ V +I ++
Sbjct: 189 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRG 247
Query: 258 FQTDI 262
F D+
Sbjct: 248 FDQDM 252
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 199 GLPGPLYNC-SAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257
G+PG C S+ D F L PGKT ++ AL F + VTV+ V +I ++
Sbjct: 183 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRG 241
Query: 258 FQTDI 262
F D+
Sbjct: 242 FDQDM 246
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 199 GLPGPLYNC-SAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257
G+PG C S+ D F L PGKT ++ AL F + VTV+ V +I ++
Sbjct: 191 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRG 249
Query: 258 FQTDI 262
F D+
Sbjct: 250 FDQDM 254
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 199 GLPGPLYNC-SAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257
G+PG C S+ D F L PGKT ++ AL F + VTV+ V +I ++
Sbjct: 169 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRG 227
Query: 258 FQTDI 262
F D+
Sbjct: 228 FDQDM 232
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 199 GLPGPLYNC-SAKDTFKLKVKPGKTYLLRLINAALNDELFFSIANHSVTVVDVDAIYIKS 257
G+PG C S+ D F L PGKT ++ AL F + VTV+ V +I ++
Sbjct: 169 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRG 227
Query: 258 FQTDI 262
F D+
Sbjct: 228 FDQDM 232
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 43/268 (16%)
Query: 49 SIITVNGQFPGPRIVAREGDRLIIKVVNHVPNNISIHWHGIRQLLSGWADGPAYITQCPI 108
S+ +NG++ GP I +GD + + N + N+S+ G+ Q+ GPA + +
Sbjct: 39 SVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM----M 93
Query: 109 QTGQSYVYNFTISGQRGTLFWHAHISWLRA-TVY----GPLVIFPKRGVPYPFPKPY--K 161
+ I TL++HA+ A VY G ++ + P P Y
Sbjct: 94 SPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVD 153
Query: 162 EVPIIFGEWFNADTEAIIN----QSLQTGAGPNVSDAYTINGLPGP------------LY 205
+ P+I + + + N + + G+G V D +NG+ P L
Sbjct: 154 DFPVIIQD------KRLDNFGTPEYNEPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLL 207
Query: 206 NCSAKDTFKLKVKPGKTYLLRLINAALNDELFF----SIANHSVTVVDVDAIYIKSFQTD 261
N S ++L++ G R ++ D+ F S+ S+ + I + D
Sbjct: 208 NASNSRRYQLQMNDG-----RPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGD 262
Query: 262 ILLITPGQTTNILLKAKPSYPNATFLMS 289
+ IT G+ +I+ + + + ++ L+S
Sbjct: 263 EVSITCGEAASIVDRIRGFFEPSSILVS 290
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 ITVNGQFPGPRIVAREGDRLIIKVV----NHVPNNISIH 85
+T +G PGP ++ EGD + + ++ N +P+NI H
Sbjct: 55 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 ITVNGQFPGPRIVAREGDRLIIKVV----NHVPNNISIH 85
+T +G PGP ++ EGD + + ++ N +P+NI H
Sbjct: 53 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 91
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 ITVNGQFPGPRIVAREGDRLIIKVV----NHVPNNISIH 85
+T +G PGP ++ EGD + + ++ N +P+NI H
Sbjct: 50 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 ITVNGQFPGPRIVAREGDRLIIKVV----NHVPNNISIH 85
+T +G PGP ++ EGD + + ++ N +P+NI H
Sbjct: 55 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 51 ITVNGQFPGPRIVAREGDRLIIKVV----NHVPNNISIH 85
+T +G PGP ++ EGD + + ++ N +P+NI H
Sbjct: 50 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 523 GGWVAIRFRADNPGVWFMHCHFEVHISW----GLKMAWIVL-NGNLPNQKLPP 570
G +RF+A PGV+ HC E + W G+ A +VL L ++K P
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQP 169
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 523 GGWVAIRFRADNPGVWFMHCHFEVHISW----GLKMAWIVL-NGNLPNQKLPP 570
G +RF+A PGV+ HC E + W G+ A +VL L ++K P
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQP 169
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 523 GGWVAIRFRADNPGVWFMHCHFEVHISW----GLKMAWIVL-NGNLPNQKLPP 570
G +RF+A PGV+ HC E + W G+ A +VL L ++K P
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQP 169
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 523 GGWVAIRFRADNPGVWFMHCHFEVHISW----GLKMAWIVL-NGNLPNQKLPP 570
G +RF+A PGV+ HC E + W G+ A +VL L ++K P
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQP 169
>pdb|2X26|A Chain A, Crystal Structure Of The Periplasmic Aliphatic Sulphonate
Binding Protein Ssua From Escherichia Coli
pdb|2X26|B Chain B, Crystal Structure Of The Periplasmic Aliphatic Sulphonate
Binding Protein Ssua From Escherichia Coli
Length = 308
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 285 TFLMSARPYATGQGTFDNSTVAGILEYEAPAKFPRSSTVSI 325
+F ++ARPYA G F +A E +A + R ++++
Sbjct: 186 SFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIAL 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,771,110
Number of Sequences: 62578
Number of extensions: 836793
Number of successful extensions: 1661
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 227
length of query: 578
length of database: 14,973,337
effective HSP length: 104
effective length of query: 474
effective length of database: 8,465,225
effective search space: 4012516650
effective search space used: 4012516650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)